Query 012744
Match_columns 457
No_of_seqs 137 out of 1203
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 05:51:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012744.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012744hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02562 UDP-glycosyltransfera 100.0 2.4E-68 5.2E-73 513.9 45.2 433 3-453 6-448 (448)
2 PLN02207 UDP-glycosyltransfera 100.0 1.3E-66 2.9E-71 499.3 44.0 444 1-456 1-467 (468)
3 PLN02410 UDP-glucoronosyl/UDP- 100.0 1.1E-66 2.4E-71 500.6 43.1 432 3-454 7-450 (451)
4 PLN02152 indole-3-acetate beta 100.0 2.6E-66 5.6E-71 496.3 43.6 432 1-452 1-454 (455)
5 PLN02555 limonoid glucosyltran 100.0 6.4E-66 1.4E-70 496.8 44.4 446 3-455 7-470 (480)
6 PLN02173 UDP-glucosyl transfer 100.0 7.4E-66 1.6E-70 492.3 42.8 425 1-453 1-447 (449)
7 PLN02210 UDP-glucosyl transfer 100.0 6.9E-65 1.5E-69 490.3 42.5 429 3-453 8-454 (456)
8 PLN02554 UDP-glycosyltransfera 100.0 6.2E-65 1.3E-69 495.8 42.1 440 3-455 2-479 (481)
9 PLN02863 UDP-glucoronosyl/UDP- 100.0 1.2E-64 2.6E-69 489.8 43.1 443 3-456 9-473 (477)
10 PLN00164 glucosyltransferase; 100.0 1.6E-64 3.4E-69 490.9 43.0 439 1-455 1-474 (480)
11 PLN02992 coniferyl-alcohol glu 100.0 2.3E-64 5.1E-69 484.6 42.0 427 3-454 5-469 (481)
12 PLN03004 UDP-glycosyltransfera 100.0 2.9E-64 6.3E-69 481.7 39.2 431 1-443 1-450 (451)
13 PLN02448 UDP-glycosyltransfera 100.0 2E-63 4.3E-68 483.7 42.3 430 3-454 10-457 (459)
14 PLN03015 UDP-glucosyl transfer 100.0 3.5E-63 7.7E-68 473.5 42.0 435 1-453 1-467 (470)
15 PLN02167 UDP-glycosyltransfera 100.0 3.3E-63 7.1E-68 483.0 41.7 445 1-454 1-472 (475)
16 PLN02670 transferase, transfer 100.0 6.4E-63 1.4E-67 474.3 40.9 433 3-455 6-466 (472)
17 PLN03007 UDP-glucosyltransfera 100.0 1.6E-62 3.5E-67 479.6 43.1 436 3-455 5-481 (482)
18 PLN02208 glycosyltransferase f 100.0 1.1E-62 2.3E-67 471.8 39.7 414 1-455 1-440 (442)
19 PLN02764 glycosyltransferase f 100.0 3E-62 6.6E-67 465.7 41.7 417 3-455 5-446 (453)
20 PLN02534 UDP-glycosyltransfera 100.0 6E-62 1.3E-66 469.8 42.0 441 1-455 5-487 (491)
21 PLN00414 glycosyltransferase f 100.0 9.3E-61 2E-65 459.0 39.9 414 1-455 1-441 (446)
22 PHA03392 egt ecdysteroid UDP-g 100.0 2.5E-53 5.5E-58 415.3 29.2 417 3-454 20-466 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 2.1E-53 4.4E-58 424.2 0.7 390 5-434 2-426 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 4E-45 8.7E-50 353.3 34.9 378 9-452 1-389 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 1.2E-44 2.6E-49 351.7 27.7 363 4-433 1-387 (401)
26 COG1819 Glycosyl transferases, 100.0 2.5E-42 5.5E-47 329.0 27.6 387 3-454 1-400 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 9.4E-43 2E-47 347.8 21.7 407 3-433 5-438 (496)
28 PF13528 Glyco_trans_1_3: Glyc 99.9 6.6E-26 1.4E-30 213.3 25.5 305 4-414 1-317 (318)
29 PRK12446 undecaprenyldiphospho 99.9 3E-25 6.4E-30 209.3 28.1 318 5-425 3-334 (352)
30 TIGR00661 MJ1255 conserved hyp 99.9 1.4E-23 3.1E-28 196.8 23.2 309 5-421 1-318 (321)
31 COG0707 MurG UDP-N-acetylgluco 99.9 2.4E-20 5.2E-25 173.7 29.7 340 4-451 1-353 (357)
32 PRK00726 murG undecaprenyldiph 99.9 6.4E-20 1.4E-24 175.5 27.9 340 4-452 2-355 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 1.8E-18 3.9E-23 165.2 26.1 319 5-424 1-331 (350)
34 COG4671 Predicted glycosyl tra 99.8 4.2E-17 9E-22 144.4 23.2 328 3-418 9-366 (400)
35 TIGR01133 murG undecaprenyldip 99.8 1.7E-16 3.8E-21 151.4 25.9 323 4-433 1-334 (348)
36 TIGR00215 lpxB lipid-A-disacch 99.8 1.3E-16 2.8E-21 152.9 22.5 351 4-449 6-383 (385)
37 TIGR03590 PseG pseudaminic aci 99.8 1.5E-16 3.1E-21 145.5 20.9 258 5-383 1-278 (279)
38 PRK13609 diacylglycerol glucos 99.7 2.4E-15 5.1E-20 145.2 23.9 139 268-424 201-345 (380)
39 PRK00025 lpxB lipid-A-disaccha 99.7 2.3E-14 5E-19 138.4 22.3 347 4-452 2-375 (380)
40 PRK13608 diacylglycerol glucos 99.6 4.2E-14 9.2E-19 136.4 20.9 164 267-452 200-369 (391)
41 PLN02605 monogalactosyldiacylg 99.6 1.4E-12 3E-17 125.7 26.1 171 261-451 198-378 (382)
42 PF04101 Glyco_tran_28_C: Glyc 99.6 2.9E-16 6.3E-21 132.8 -1.6 139 271-420 1-147 (167)
43 cd03814 GT1_like_2 This family 99.5 3.3E-11 7E-16 115.4 29.4 334 14-450 14-361 (364)
44 TIGR03492 conserved hypothetic 99.5 2.1E-11 4.6E-16 117.1 24.3 332 13-425 6-372 (396)
45 PF03033 Glyco_transf_28: Glyc 99.4 5.5E-13 1.2E-17 109.1 9.3 125 6-140 1-133 (139)
46 PLN02871 UDP-sulfoquinovose:DA 99.4 6.8E-10 1.5E-14 110.0 32.2 131 271-423 264-406 (465)
47 COG3980 spsG Spore coat polysa 99.4 1.7E-11 3.6E-16 106.0 17.6 296 4-431 1-307 (318)
48 cd03818 GT1_ExpC_like This fam 99.4 1.4E-09 3.1E-14 105.6 30.8 85 326-422 280-371 (396)
49 cd03794 GT1_wbuB_like This fam 99.3 1.1E-09 2.5E-14 105.5 27.2 344 5-425 1-373 (394)
50 cd03823 GT1_ExpE7_like This fa 99.3 2.5E-09 5.5E-14 102.0 28.3 137 269-423 190-335 (359)
51 cd03816 GT1_ALG1_like This fam 99.3 6.4E-09 1.4E-13 101.4 29.4 330 2-417 2-381 (415)
52 cd03817 GT1_UGDG_like This fam 99.3 7.1E-09 1.5E-13 99.4 29.0 130 270-420 202-346 (374)
53 cd04962 GT1_like_5 This family 99.3 4.4E-09 9.4E-14 101.3 27.1 85 326-422 252-341 (371)
54 cd03800 GT1_Sucrose_synthase T 99.3 7E-09 1.5E-13 100.8 28.5 331 14-421 21-372 (398)
55 cd03801 GT1_YqgM_like This fam 99.3 1.2E-08 2.6E-13 97.3 29.8 311 14-423 14-347 (374)
56 cd03808 GT1_cap1E_like This fa 99.3 1.8E-08 3.8E-13 95.9 30.1 317 5-423 1-335 (359)
57 PRK05749 3-deoxy-D-manno-octul 99.2 1.1E-08 2.4E-13 100.3 27.9 76 338-423 314-394 (425)
58 cd03825 GT1_wcfI_like This fam 99.2 2.1E-08 4.5E-13 96.2 27.4 112 326-452 243-362 (365)
59 cd03798 GT1_wlbH_like This fam 99.2 1E-07 2.2E-12 91.2 29.9 314 13-420 13-347 (377)
60 cd03820 GT1_amsD_like This fam 99.1 7.9E-08 1.7E-12 91.0 28.4 187 208-431 133-333 (348)
61 PRK10307 putative glycosyl tra 99.1 6.4E-08 1.4E-12 94.6 28.1 161 271-454 230-407 (412)
62 cd03795 GT1_like_4 This family 99.1 1.3E-07 2.8E-12 90.4 28.1 130 271-421 192-336 (357)
63 cd03805 GT1_ALG2_like This fam 99.1 1.3E-07 2.7E-12 91.9 28.1 83 326-421 279-368 (392)
64 TIGR03449 mycothiol_MshA UDP-N 99.1 5.9E-07 1.3E-11 87.6 31.9 86 326-423 282-374 (405)
65 PF04007 DUF354: Protein of un 99.1 2E-07 4.2E-12 86.4 26.3 299 4-415 1-308 (335)
66 cd03821 GT1_Bme6_like This fam 99.1 4.7E-07 1E-11 86.7 29.7 84 326-423 261-351 (375)
67 TIGR00236 wecB UDP-N-acetylglu 99.1 2.2E-08 4.8E-13 96.1 20.3 155 270-449 198-362 (365)
68 cd03786 GT1_UDP-GlcNAc_2-Epime 99.0 1.3E-08 2.7E-13 97.8 15.2 134 269-422 198-342 (363)
69 cd03796 GT1_PIG-A_like This fa 99.0 9E-07 1.9E-11 86.1 28.2 79 326-418 249-334 (398)
70 cd05844 GT1_like_7 Glycosyltra 99.0 3.8E-07 8.2E-12 87.6 25.4 85 326-422 244-341 (367)
71 cd03811 GT1_WabH_like This fam 99.0 3.3E-07 7.1E-12 86.8 24.4 318 5-426 1-341 (353)
72 cd03799 GT1_amsK_like This is 98.9 1.3E-06 2.8E-11 83.3 27.0 134 270-420 179-330 (355)
73 TIGR02468 sucrsPsyn_pln sucros 98.9 1.7E-06 3.6E-11 90.5 28.9 362 14-425 195-645 (1050)
74 cd03807 GT1_WbnK_like This fam 98.9 5.8E-06 1.3E-10 78.8 30.9 79 327-419 251-334 (365)
75 cd04955 GT1_like_6 This family 98.9 1.2E-06 2.5E-11 84.0 25.9 153 273-450 196-360 (363)
76 cd04951 GT1_WbdM_like This fam 98.9 1.6E-06 3.5E-11 82.9 26.6 139 270-432 188-342 (360)
77 TIGR02472 sucr_P_syn_N sucrose 98.9 5.5E-06 1.2E-10 81.6 30.7 93 326-433 316-419 (439)
78 cd03812 GT1_CapH_like This fam 98.9 2.7E-06 5.8E-11 81.4 27.6 135 269-424 191-338 (358)
79 PRK01021 lpxB lipid-A-disaccha 98.9 1.3E-06 2.7E-11 85.9 24.7 218 210-446 361-600 (608)
80 cd03802 GT1_AviGT4_like This f 98.9 8.2E-07 1.8E-11 84.1 23.4 127 272-418 173-309 (335)
81 cd03819 GT1_WavL_like This fam 98.9 6.3E-06 1.4E-10 78.7 29.7 134 270-419 185-333 (355)
82 cd03822 GT1_ecORF704_like This 98.9 2.8E-06 6.2E-11 81.2 26.5 84 326-422 246-339 (366)
83 PLN02275 transferase, transfer 98.8 3.8E-06 8.3E-11 80.7 26.9 320 3-415 4-371 (371)
84 COG1519 KdtA 3-deoxy-D-manno-o 98.8 2.1E-05 4.5E-10 73.4 29.6 313 11-432 56-401 (419)
85 cd03809 GT1_mtfB_like This fam 98.8 3.2E-06 7E-11 80.8 25.4 91 325-429 251-348 (365)
86 TIGR02470 sucr_synth sucrose s 98.8 3E-05 6.5E-10 79.5 32.6 86 326-423 618-719 (784)
87 TIGR03088 stp2 sugar transfera 98.8 2.1E-05 4.7E-10 75.7 30.0 111 327-452 255-370 (374)
88 PRK09922 UDP-D-galactose:(gluc 98.8 5.2E-06 1.1E-10 79.5 24.4 130 271-420 181-327 (359)
89 PRK14089 ipid-A-disaccharide s 98.7 2.6E-06 5.6E-11 79.8 20.9 147 270-431 168-332 (347)
90 TIGR02149 glgA_Coryne glycogen 98.7 1.9E-05 4.1E-10 76.5 27.7 138 271-421 202-356 (388)
91 PF02684 LpxB: Lipid-A-disacch 98.7 8.7E-06 1.9E-10 76.7 23.6 216 209-445 132-368 (373)
92 cd03792 GT1_Trehalose_phosphor 98.7 1.7E-05 3.6E-10 76.4 25.7 110 326-452 251-369 (372)
93 PLN02846 digalactosyldiacylgly 98.6 4.9E-05 1.1E-09 73.9 27.1 73 331-418 288-364 (462)
94 TIGR03087 stp1 sugar transfera 98.6 2.1E-05 4.7E-10 76.4 23.5 83 326-422 279-367 (397)
95 PRK15427 colanic acid biosynth 98.6 9.7E-05 2.1E-09 71.8 27.8 113 326-453 278-404 (406)
96 cd03806 GT1_ALG11_like This fa 98.5 8E-05 1.7E-09 72.8 26.0 80 326-418 304-393 (419)
97 PF02350 Epimerase_2: UDP-N-ac 98.5 2.2E-06 4.7E-11 80.9 13.8 136 267-424 178-325 (346)
98 PRK15179 Vi polysaccharide bio 98.5 0.00076 1.7E-08 69.2 31.9 92 326-427 573-673 (694)
99 TIGR03568 NeuC_NnaA UDP-N-acet 98.5 7.7E-05 1.7E-09 71.3 22.9 133 269-420 201-341 (365)
100 cd03804 GT1_wbaZ_like This fam 98.5 1.6E-05 3.5E-10 75.9 18.5 133 272-426 197-336 (351)
101 PLN00142 sucrose synthase 98.4 0.00029 6.3E-09 72.5 27.9 85 327-423 642-742 (815)
102 PLN02949 transferase, transfer 98.4 0.0014 3.1E-08 64.5 30.6 80 326-417 334-422 (463)
103 KOG3349 Predicted glycosyltran 98.4 2.6E-06 5.6E-11 66.7 8.6 114 271-393 5-131 (170)
104 cd04950 GT1_like_1 Glycosyltra 98.4 0.00033 7.2E-09 67.4 25.0 179 207-418 150-341 (373)
105 TIGR02095 glgA glycogen/starch 98.3 0.00063 1.4E-08 67.8 26.7 129 271-416 292-436 (473)
106 PRK00654 glgA glycogen synthas 98.3 0.00068 1.5E-08 67.3 25.9 131 270-416 282-427 (466)
107 cd03791 GT1_Glycogen_synthase_ 98.2 0.00076 1.7E-08 67.3 25.4 132 271-416 297-441 (476)
108 COG0763 LpxB Lipid A disacchar 98.1 0.0008 1.7E-08 62.3 21.1 219 209-452 135-379 (381)
109 TIGR02918 accessory Sec system 98.1 0.00086 1.9E-08 66.7 21.7 99 326-430 375-483 (500)
110 PLN02501 digalactosyldiacylgly 98.1 0.0013 2.8E-08 66.1 22.4 77 329-420 603-684 (794)
111 COG0381 WecB UDP-N-acetylgluco 98.0 0.0027 5.9E-08 59.0 21.7 328 1-423 1-347 (383)
112 cd03813 GT1_like_3 This family 98.0 0.0044 9.5E-08 61.8 25.2 87 326-423 353-448 (475)
113 PRK15484 lipopolysaccharide 1, 98.0 0.00052 1.1E-08 66.2 17.3 116 325-455 255-378 (380)
114 PLN02316 synthase/transferase 98.0 0.032 7E-07 59.5 31.2 114 326-449 899-1028(1036)
115 cd04949 GT1_gtfA_like This fam 97.9 0.00069 1.5E-08 65.2 17.9 85 326-419 260-347 (372)
116 cd04946 GT1_AmsK_like This fam 97.9 0.00036 7.8E-09 68.0 15.3 111 327-449 289-406 (407)
117 PF00534 Glycos_transf_1: Glyc 97.9 0.00014 3.1E-09 61.4 10.7 89 325-425 71-166 (172)
118 PF13844 Glyco_transf_41: Glyc 97.9 0.00019 4E-09 69.3 12.2 139 269-422 284-435 (468)
119 PRK15490 Vi polysaccharide bio 97.7 0.036 7.9E-07 54.9 25.7 113 326-453 454-574 (578)
120 cd01635 Glycosyltransferase_GT 97.7 0.0032 6.9E-08 55.4 17.3 48 326-375 160-215 (229)
121 COG5017 Uncharacterized conser 97.6 0.00019 4.2E-09 55.4 6.5 108 272-395 2-122 (161)
122 PRK10125 putative glycosyl tra 97.6 0.045 9.7E-07 53.2 24.4 102 284-411 255-365 (405)
123 TIGR02193 heptsyl_trn_I lipopo 97.6 0.0056 1.2E-07 57.5 17.0 135 268-415 178-319 (319)
124 COG1817 Uncharacterized protei 97.4 0.052 1.1E-06 48.9 19.1 104 12-138 8-114 (346)
125 PRK14099 glycogen synthase; Pr 97.3 0.25 5.5E-06 49.2 26.9 41 1-41 1-47 (485)
126 PF13692 Glyco_trans_1_4: Glyc 97.2 0.0013 2.8E-08 53.0 6.8 80 326-417 52-135 (135)
127 PRK09814 beta-1,6-galactofuran 97.2 0.0015 3.2E-08 61.8 8.1 109 326-451 206-332 (333)
128 PRK10017 colanic acid biosynth 97.1 0.35 7.6E-06 47.1 27.3 179 260-454 225-424 (426)
129 cd03789 GT1_LPS_heptosyltransf 96.9 0.089 1.9E-06 48.3 16.9 102 5-133 1-105 (279)
130 TIGR02201 heptsyl_trn_III lipo 96.8 0.075 1.6E-06 50.5 16.5 105 5-133 1-108 (344)
131 PRK10916 ADP-heptose:LPS hepto 96.8 0.3 6.5E-06 46.5 20.2 103 4-133 1-106 (348)
132 PF13477 Glyco_trans_4_2: Glyc 96.7 0.028 6.1E-07 45.4 11.3 102 5-135 1-106 (139)
133 PRK10422 lipopolysaccharide co 96.7 0.12 2.6E-06 49.3 17.1 106 3-133 5-113 (352)
134 PF06722 DUF1205: Protein of u 96.7 0.003 6.5E-08 47.1 4.5 53 256-308 27-84 (97)
135 COG0859 RfaF ADP-heptose:LPS h 96.5 0.17 3.7E-06 47.8 16.4 104 4-133 2-107 (334)
136 TIGR02195 heptsyl_trn_II lipop 96.4 0.25 5.5E-06 46.7 16.7 102 5-133 1-105 (334)
137 COG3914 Spy Predicted O-linked 96.3 0.039 8.5E-07 53.8 10.8 132 268-412 428-573 (620)
138 PHA01633 putative glycosyl tra 96.3 0.065 1.4E-06 50.2 12.0 85 325-417 199-307 (335)
139 KOG2941 Beta-1,4-mannosyltrans 96.3 0.93 2E-05 41.7 27.1 362 3-427 12-423 (444)
140 KOG4626 O-linked N-acetylgluco 96.2 0.064 1.4E-06 52.7 11.4 139 268-419 757-906 (966)
141 PRK10964 ADP-heptose:LPS hepto 96.1 0.43 9.2E-06 44.9 16.6 46 4-49 1-48 (322)
142 PF06258 Mito_fiss_Elm1: Mitoc 96.0 0.21 4.5E-06 46.4 13.5 161 211-395 98-281 (311)
143 PF13579 Glyco_trans_4_4: Glyc 95.9 0.016 3.6E-07 47.7 5.6 96 19-135 6-103 (160)
144 PRK14098 glycogen synthase; Pr 95.8 0.22 4.7E-06 49.8 13.7 129 271-415 308-449 (489)
145 COG3660 Predicted nucleoside-d 95.7 1.2 2.7E-05 39.3 16.0 71 290-370 189-270 (329)
146 PF12000 Glyco_trans_4_3: Gkyc 95.7 0.079 1.7E-06 44.1 8.5 96 29-137 1-97 (171)
147 PF13524 Glyco_trans_1_2: Glyc 95.6 0.15 3.2E-06 37.8 9.1 81 352-449 9-91 (92)
148 PHA01630 putative group 1 glyc 95.6 0.75 1.6E-05 43.3 15.7 109 333-453 196-329 (331)
149 PRK02261 methylaspartate mutas 95.0 0.63 1.4E-05 37.4 11.3 61 1-66 1-61 (137)
150 TIGR02400 trehalose_OtsA alpha 93.8 0.42 9.2E-06 47.1 9.6 101 333-453 342-455 (456)
151 cd02067 B12-binding B12 bindin 93.5 0.96 2.1E-05 35.3 9.4 103 5-130 1-104 (119)
152 PF01975 SurE: Survival protei 93.2 1.5 3.2E-05 37.7 10.8 117 4-138 1-135 (196)
153 PF08660 Alg14: Oligosaccharid 92.9 0.9 1.9E-05 38.0 8.9 116 8-137 2-130 (170)
154 PF13439 Glyco_transf_4: Glyco 91.6 0.68 1.5E-05 38.5 6.9 101 13-139 11-112 (177)
155 COG4370 Uncharacterized protei 91.4 0.51 1.1E-05 42.5 5.8 98 327-433 294-396 (412)
156 PLN02939 transferase, transfer 91.2 4.8 0.0001 43.0 13.5 89 326-422 836-940 (977)
157 PRK13932 stationary phase surv 91.0 2.8 6E-05 37.6 10.2 115 2-136 4-133 (257)
158 PF02374 ArsA_ATPase: Anion-tr 90.6 1.7 3.6E-05 40.4 8.8 44 4-47 1-45 (305)
159 KOG0853 Glycosyltransferase [C 90.5 19 0.00041 35.6 19.1 61 357-425 381-441 (495)
160 cd02070 corrinoid_protein_B12- 90.3 2.1 4.6E-05 37.0 8.7 106 3-133 82-189 (201)
161 TIGR03713 acc_sec_asp1 accesso 89.9 0.68 1.5E-05 46.5 6.0 76 327-419 409-490 (519)
162 COG2185 Sbm Methylmalonyl-CoA 89.9 1.7 3.7E-05 34.8 7.0 47 1-47 10-56 (143)
163 TIGR02370 pyl_corrinoid methyl 88.7 3.4 7.4E-05 35.6 8.8 104 3-130 84-188 (197)
164 cd03788 GT1_TPS Trehalose-6-Ph 88.7 2 4.4E-05 42.6 8.4 101 332-452 346-459 (460)
165 COG0438 RfaG Glycosyltransfera 88.3 20 0.00044 33.0 14.9 87 327-425 257-350 (381)
166 PRK05986 cob(I)alamin adenolsy 87.1 11 0.00024 32.1 10.5 99 2-117 21-125 (191)
167 TIGR00715 precor6x_red precorr 86.6 2.9 6.4E-05 37.6 7.3 90 5-135 2-99 (256)
168 PRK13933 stationary phase surv 86.3 13 0.00028 33.3 11.1 24 20-44 16-39 (253)
169 cd02071 MM_CoA_mut_B12_BD meth 86.3 12 0.00026 29.3 9.9 42 5-46 1-42 (122)
170 TIGR00087 surE 5'/3'-nucleotid 86.2 5.1 0.00011 35.7 8.5 100 18-136 14-128 (244)
171 PRK02797 4-alpha-L-fucosyltran 86.0 19 0.00041 33.2 12.0 80 327-414 206-291 (322)
172 PRK13934 stationary phase surv 85.9 14 0.00029 33.4 11.0 101 16-136 12-127 (266)
173 PF02441 Flavoprotein: Flavopr 85.8 1.3 2.9E-05 35.1 4.3 45 4-49 1-45 (129)
174 PRK13935 stationary phase surv 85.7 13 0.00028 33.3 10.8 39 5-45 2-40 (253)
175 PLN03063 alpha,alpha-trehalose 85.2 3.8 8.3E-05 43.6 8.5 97 339-454 371-477 (797)
176 TIGR02919 accessory Sec system 85.2 15 0.00032 36.1 11.9 135 269-431 283-426 (438)
177 COG1618 Predicted nucleotide k 85.1 1.1 2.3E-05 36.7 3.4 57 3-68 5-61 (179)
178 PF02142 MGS: MGS-like domain 84.9 2.9 6.2E-05 31.1 5.5 83 20-132 2-94 (95)
179 COG0003 ArsA Predicted ATPase 84.3 3.8 8.3E-05 38.2 7.1 43 4-46 2-45 (322)
180 KOG1387 Glycosyltransferase [C 84.2 36 0.00079 31.8 20.8 262 106-433 149-445 (465)
181 PRK01175 phosphoribosylformylg 83.6 7.6 0.00017 35.1 8.6 59 1-70 1-59 (261)
182 PF02951 GSH-S_N: Prokaryotic 83.5 2.1 4.6E-05 33.3 4.3 39 4-42 1-42 (119)
183 PF07429 Glyco_transf_56: 4-al 83.5 27 0.00059 32.7 12.0 82 327-416 245-332 (360)
184 PRK05647 purN phosphoribosylgl 83.1 14 0.0003 32.0 9.6 104 4-138 2-112 (200)
185 PF00731 AIRC: AIR carboxylase 82.8 9.3 0.0002 31.1 7.9 139 271-433 2-148 (150)
186 TIGR02398 gluc_glyc_Psyn gluco 82.8 46 0.001 33.2 14.3 106 330-455 365-483 (487)
187 cd01423 MGS_CPS_I_III Methylgl 82.5 13 0.00028 28.8 8.5 94 8-133 4-106 (116)
188 smart00851 MGS MGS-like domain 82.4 17 0.00036 26.6 8.8 78 20-132 2-89 (90)
189 PRK08305 spoVFB dipicolinate s 82.2 2.4 5.3E-05 36.2 4.6 45 2-46 4-48 (196)
190 PF00551 Formyl_trans_N: Formy 82.1 14 0.00031 31.2 9.4 108 4-138 1-111 (181)
191 cd02069 methionine_synthase_B1 81.9 12 0.00026 32.7 8.9 44 3-46 88-131 (213)
192 COG1703 ArgK Putative periplas 81.6 7.8 0.00017 35.3 7.6 114 4-135 52-173 (323)
193 PRK00346 surE 5'(3')-nucleotid 80.7 26 0.00057 31.4 10.7 99 17-136 13-124 (250)
194 PRK12342 hypothetical protein; 80.7 16 0.00035 32.8 9.4 32 106-137 108-145 (254)
195 cd01424 MGS_CPS_II Methylglyox 80.5 20 0.00044 27.3 8.9 84 15-133 10-100 (110)
196 PF12146 Hydrolase_4: Putative 80.3 4 8.7E-05 29.1 4.5 36 4-39 16-51 (79)
197 PF06925 MGDG_synth: Monogalac 80.2 2.9 6.3E-05 35.0 4.4 22 16-37 1-25 (169)
198 COG0496 SurE Predicted acid ph 80.1 8.2 0.00018 34.3 7.2 30 16-46 12-41 (252)
199 PF04127 DFP: DNA / pantothena 80.1 1.8 3.9E-05 36.8 3.1 41 1-41 1-53 (185)
200 cd01974 Nitrogenase_MoFe_beta 80.0 18 0.0004 35.5 10.6 27 106-135 376-402 (435)
201 PF05159 Capsule_synth: Capsul 79.9 4.8 0.0001 36.6 6.2 41 330-373 186-226 (269)
202 cd00550 ArsA_ATPase Oxyanion-t 79.8 14 0.00031 33.2 9.1 38 6-43 3-40 (254)
203 PRK14501 putative bifunctional 79.5 6.8 0.00015 41.5 7.8 108 331-454 346-462 (726)
204 PRK00090 bioD dithiobiotin syn 78.7 22 0.00047 31.2 9.8 33 6-38 2-35 (222)
205 COG2894 MinD Septum formation 78.6 17 0.00036 31.7 8.3 37 5-41 3-41 (272)
206 PF04464 Glyphos_transf: CDP-G 78.5 3.8 8.2E-05 39.3 5.2 111 326-446 251-365 (369)
207 PRK06718 precorrin-2 dehydroge 78.1 25 0.00054 30.4 9.6 143 269-434 11-165 (202)
208 PF04413 Glycos_transf_N: 3-De 77.8 8.2 0.00018 32.9 6.5 94 11-136 28-126 (186)
209 PF02310 B12-binding: B12 bind 77.5 9 0.0002 29.7 6.3 42 5-46 2-43 (121)
210 TIGR01470 cysG_Nterm siroheme 77.2 48 0.001 28.7 11.1 145 269-433 10-164 (205)
211 COG0552 FtsY Signal recognitio 77.1 24 0.00052 32.8 9.4 43 6-48 142-184 (340)
212 KOG1111 N-acetylglucosaminyltr 76.8 68 0.0015 30.3 17.9 82 283-371 209-301 (426)
213 cd01425 RPS2 Ribosomal protein 76.2 12 0.00027 32.0 7.2 115 17-139 42-161 (193)
214 TIGR01007 eps_fam capsular exo 76.0 50 0.0011 28.4 12.2 39 3-41 16-56 (204)
215 cd00561 CobA_CobO_BtuR ATP:cor 75.0 46 0.001 27.5 11.1 97 5-118 4-106 (159)
216 TIGR01501 MthylAspMutase methy 75.0 29 0.00063 27.7 8.4 59 3-66 1-59 (134)
217 cd01965 Nitrogenase_MoFe_beta_ 74.7 14 0.00031 36.3 8.1 37 93-135 360-396 (428)
218 PRK09620 hypothetical protein; 74.4 5.4 0.00012 35.3 4.6 41 1-41 1-53 (229)
219 TIGR00460 fmt methionyl-tRNA f 74.4 29 0.00062 32.4 9.7 33 4-41 1-33 (313)
220 cd01980 Chlide_reductase_Y Chl 74.3 40 0.00087 33.0 11.1 27 106-135 349-375 (416)
221 PF00448 SRP54: SRP54-type pro 74.3 23 0.00051 30.4 8.4 40 5-44 2-42 (196)
222 PRK06988 putative formyltransf 74.2 32 0.00069 32.1 9.9 33 4-41 3-35 (312)
223 PRK05632 phosphate acetyltrans 74.1 47 0.001 34.9 12.1 101 5-138 4-116 (684)
224 PRK02155 ppnK NAD(+)/NADH kina 73.6 14 0.0003 34.1 7.2 55 342-418 62-120 (291)
225 TIGR02015 BchY chlorophyllide 73.5 30 0.00064 33.9 9.9 27 106-135 354-380 (422)
226 PRK13931 stationary phase surv 72.5 24 0.00053 31.8 8.3 100 18-136 14-129 (261)
227 COG2910 Putative NADH-flavin r 72.2 5 0.00011 33.7 3.5 35 4-42 1-35 (211)
228 PF02571 CbiJ: Precorrin-6x re 71.7 13 0.00027 33.4 6.3 95 4-137 1-102 (249)
229 TIGR00640 acid_CoA_mut_C methy 71.7 49 0.0011 26.3 10.5 60 2-66 1-60 (132)
230 cd03793 GT1_Glycogen_synthase_ 71.7 11 0.00023 38.1 6.3 78 337-418 468-553 (590)
231 TIGR00708 cobA cob(I)alamin ad 71.6 60 0.0013 27.2 10.7 96 4-117 6-107 (173)
232 TIGR00347 bioD dethiobiotin sy 71.6 24 0.00052 29.2 7.8 27 11-37 6-32 (166)
233 PRK06849 hypothetical protein; 71.5 24 0.00052 34.1 8.8 38 1-42 1-39 (389)
234 cd01421 IMPCH Inosine monophos 71.1 27 0.00059 29.6 7.7 89 17-121 10-104 (187)
235 PF01075 Glyco_transf_9: Glyco 70.4 11 0.00024 33.5 5.9 94 268-371 104-208 (247)
236 PRK01077 cobyrinic acid a,c-di 69.5 49 0.0011 32.8 10.5 104 5-138 5-124 (451)
237 TIGR01285 nifN nitrogenase mol 69.3 32 0.00069 33.8 9.1 87 3-134 311-397 (432)
238 PF01012 ETF: Electron transfe 68.5 22 0.00047 29.5 6.8 109 6-136 2-122 (164)
239 cd03466 Nitrogenase_NifN_2 Nit 68.5 48 0.001 32.6 10.2 26 106-134 371-396 (429)
240 PRK08506 replicative DNA helic 68.5 36 0.00079 33.9 9.4 42 6-47 195-236 (472)
241 TIGR00639 PurN phosphoribosylg 67.5 79 0.0017 27.0 10.3 103 4-138 1-111 (190)
242 PF06564 YhjQ: YhjQ protein; 67.1 52 0.0011 29.3 9.1 30 11-40 10-39 (243)
243 COG0052 RpsB Ribosomal protein 67.1 29 0.00064 30.7 7.3 33 107-139 156-190 (252)
244 PRK06249 2-dehydropantoate 2-r 66.9 14 0.00031 34.5 6.0 43 1-49 3-45 (313)
245 PHA02542 41 41 helicase; Provi 66.1 41 0.00089 33.5 9.1 41 6-46 193-233 (473)
246 PRK07206 hypothetical protein; 65.3 32 0.00069 33.6 8.3 35 1-41 1-35 (416)
247 PRK08057 cobalt-precorrin-6x r 65.2 30 0.00066 31.0 7.4 90 5-136 4-100 (248)
248 COG1484 DnaC DNA replication p 65.0 13 0.00028 33.5 5.0 47 3-49 105-151 (254)
249 TIGR03600 phage_DnaB phage rep 64.4 51 0.0011 32.3 9.5 42 6-47 197-239 (421)
250 PRK05595 replicative DNA helic 64.3 37 0.00081 33.5 8.6 42 6-47 204-246 (444)
251 PF03796 DnaB_C: DnaB-like hel 64.3 11 0.00024 34.0 4.6 124 6-136 22-178 (259)
252 PF09314 DUF1972: Domain of un 63.7 63 0.0014 27.5 8.5 40 19-66 22-62 (185)
253 PRK13982 bifunctional SbtC-lik 62.7 12 0.00026 37.0 4.6 41 2-42 255-307 (475)
254 PRK13011 formyltetrahydrofolat 62.5 88 0.0019 28.8 10.0 104 3-138 89-197 (286)
255 cd01017 AdcA Metal binding pro 62.5 72 0.0016 29.2 9.6 42 92-136 208-251 (282)
256 PRK07313 phosphopantothenoylcy 62.4 10 0.00022 32.2 3.6 44 4-48 2-45 (182)
257 PF02606 LpxK: Tetraacyldisacc 62.4 30 0.00064 32.5 7.1 34 9-42 43-76 (326)
258 PF06792 UPF0261: Uncharacteri 62.0 1.6E+02 0.0034 28.5 12.1 98 267-376 183-281 (403)
259 PRK10867 signal recognition pa 61.9 60 0.0013 31.9 9.2 41 6-46 103-144 (433)
260 PRK14106 murD UDP-N-acetylmura 61.6 63 0.0014 31.9 9.7 35 2-41 4-38 (450)
261 PRK13789 phosphoribosylamine-- 61.2 27 0.0006 34.2 6.9 38 1-43 1-39 (426)
262 PRK09165 replicative DNA helic 61.1 46 0.00099 33.4 8.6 43 6-48 220-277 (497)
263 PRK00005 fmt methionyl-tRNA fo 61.1 1E+02 0.0022 28.7 10.4 33 106-138 77-110 (309)
264 PLN02929 NADH kinase 61.0 38 0.00082 31.3 7.3 67 342-418 63-138 (301)
265 PF03808 Glyco_tran_WecB: Glyc 61.0 98 0.0021 25.9 10.9 95 20-139 37-136 (172)
266 PRK06321 replicative DNA helic 61.0 63 0.0014 32.2 9.4 42 6-47 229-271 (472)
267 PF01297 TroA: Periplasmic sol 61.0 42 0.00091 30.2 7.7 85 27-137 145-231 (256)
268 TIGR01425 SRP54_euk signal rec 61.0 55 0.0012 32.0 8.7 39 6-44 103-141 (429)
269 COG0287 TyrA Prephenate dehydr 60.9 75 0.0016 29.1 9.2 42 2-48 2-43 (279)
270 cd01018 ZntC Metal binding pro 60.9 87 0.0019 28.4 9.8 77 33-137 171-249 (266)
271 cd00532 MGS-like MGS-like doma 60.8 73 0.0016 24.4 8.6 85 16-133 10-104 (112)
272 PRK06732 phosphopantothenate-- 60.5 13 0.00027 33.0 4.1 37 4-40 1-49 (229)
273 PRK14478 nitrogenase molybdenu 60.3 73 0.0016 31.8 9.8 26 106-134 392-417 (475)
274 PRK00881 purH bifunctional pho 60.2 51 0.0011 32.8 8.4 98 4-119 4-107 (513)
275 TIGR01283 nifE nitrogenase mol 59.7 1.1E+02 0.0023 30.4 10.9 26 106-134 394-419 (456)
276 PLN02948 phosphoribosylaminoim 59.7 1.3E+02 0.0027 31.0 11.5 86 348-437 468-562 (577)
277 PRK01231 ppnK inorganic polyph 59.6 35 0.00076 31.5 6.9 55 342-418 61-119 (295)
278 cd00984 DnaB_C DnaB helicase C 59.6 71 0.0015 28.3 8.9 42 7-48 17-59 (242)
279 PRK12311 rpsB 30S ribosomal pr 59.4 43 0.00092 31.3 7.4 34 106-139 151-186 (326)
280 TIGR02852 spore_dpaB dipicolin 59.4 12 0.00027 31.7 3.6 40 4-43 1-40 (187)
281 PRK04885 ppnK inorganic polyph 59.3 13 0.00028 33.7 4.0 53 344-418 36-94 (265)
282 PRK05920 aromatic acid decarbo 59.1 17 0.00036 31.5 4.4 46 3-49 3-48 (204)
283 PRK06029 3-octaprenyl-4-hydrox 58.9 17 0.00036 30.9 4.3 45 4-49 2-47 (185)
284 TIGR00379 cobB cobyrinic acid 58.9 1E+02 0.0022 30.5 10.5 107 6-139 2-121 (449)
285 cd01121 Sms Sms (bacterial rad 58.8 1.7E+02 0.0036 28.2 11.5 41 6-46 85-125 (372)
286 PRK05973 replicative DNA helic 58.6 85 0.0018 27.9 8.9 43 6-48 67-109 (237)
287 PRK05579 bifunctional phosphop 58.5 17 0.00036 35.2 4.8 48 1-49 4-51 (399)
288 PF08323 Glyco_transf_5: Starc 57.3 15 0.00032 32.9 4.0 37 5-41 1-43 (245)
289 PRK08760 replicative DNA helic 57.2 61 0.0013 32.4 8.6 42 6-47 232-274 (476)
290 PRK11519 tyrosine kinase; Prov 57.0 2.6E+02 0.0056 29.8 13.7 117 3-135 525-667 (719)
291 TIGR00355 purH phosphoribosyla 56.9 47 0.001 32.9 7.5 87 18-120 11-103 (511)
292 PRK14098 glycogen synthase; Pr 56.7 18 0.00038 36.3 4.8 38 4-41 6-49 (489)
293 PRK05636 replicative DNA helic 56.5 57 0.0012 32.8 8.3 40 7-46 269-309 (505)
294 TIGR00521 coaBC_dfp phosphopan 56.5 17 0.00038 35.0 4.6 48 1-49 1-48 (390)
295 TIGR00064 ftsY signal recognit 56.3 1.2E+02 0.0026 27.7 9.7 38 5-42 74-111 (272)
296 PF06506 PrpR_N: Propionate ca 56.2 12 0.00027 31.5 3.2 30 342-374 33-62 (176)
297 PRK03359 putative electron tra 56.1 20 0.00043 32.3 4.6 32 106-137 111-148 (256)
298 PF05693 Glycogen_syn: Glycoge 55.8 11 0.00025 37.9 3.2 100 325-431 439-566 (633)
299 TIGR02329 propionate_PrpR prop 55.8 1.1E+02 0.0023 31.1 10.1 108 15-137 37-172 (526)
300 COG0541 Ffh Signal recognition 55.8 46 0.001 32.3 7.0 44 5-48 102-145 (451)
301 TIGR00421 ubiX_pad polyprenyl 55.1 15 0.00033 31.1 3.5 42 6-48 2-43 (181)
302 PF01075 Glyco_transf_9: Glyco 55.0 89 0.0019 27.7 8.8 100 3-138 105-212 (247)
303 COG0801 FolK 7,8-dihydro-6-hyd 54.7 27 0.0006 28.7 4.7 29 271-299 3-31 (160)
304 PRK06027 purU formyltetrahydro 54.5 1.2E+02 0.0025 28.0 9.4 103 3-137 89-196 (286)
305 PF02585 PIG-L: GlcNAc-PI de-N 54.5 49 0.0011 25.9 6.3 21 19-39 13-33 (128)
306 cd01452 VWA_26S_proteasome_sub 54.1 61 0.0013 27.6 7.0 62 6-68 111-175 (187)
307 PRK14569 D-alanyl-alanine synt 53.1 28 0.0006 32.2 5.2 39 1-39 1-43 (296)
308 PRK07313 phosphopantothenoylcy 53.0 1.4E+02 0.0031 25.3 9.4 137 271-416 4-179 (182)
309 PRK14077 pnk inorganic polypho 53.0 16 0.00036 33.5 3.6 57 340-418 61-121 (287)
310 PRK02231 ppnK inorganic polyph 53.0 13 0.00027 33.9 2.8 58 338-417 37-98 (272)
311 PRK08006 replicative DNA helic 52.9 1.1E+02 0.0024 30.5 9.6 42 6-47 227-269 (471)
312 cd02037 MRP-like MRP (Multiple 52.8 56 0.0012 27.1 6.6 32 11-42 8-39 (169)
313 TIGR01286 nifK nitrogenase mol 52.7 1.2E+02 0.0027 30.5 10.0 26 106-134 436-461 (515)
314 cd07039 TPP_PYR_POX Pyrimidine 52.2 1.4E+02 0.0029 24.8 9.8 27 347-373 65-97 (164)
315 TIGR00959 ffh signal recogniti 52.0 1.1E+02 0.0023 30.1 9.1 40 6-45 102-142 (428)
316 PRK04539 ppnK inorganic polyph 51.9 24 0.00052 32.6 4.5 58 339-418 64-125 (296)
317 PRK11823 DNA repair protein Ra 51.9 2E+02 0.0044 28.4 11.2 41 6-46 83-123 (446)
318 cd01985 ETF The electron trans 51.9 1.3E+02 0.0028 25.2 8.8 29 106-134 90-121 (181)
319 PF01210 NAD_Gly3P_dh_N: NAD-d 51.7 10 0.00023 31.2 2.0 32 5-41 1-32 (157)
320 PLN02939 transferase, transfer 51.5 27 0.00059 37.6 5.3 40 3-42 481-526 (977)
321 COG2099 CobK Precorrin-6x redu 51.2 75 0.0016 28.4 7.1 79 20-135 14-100 (257)
322 TIGR02113 coaC_strep phosphopa 51.1 18 0.00039 30.5 3.3 42 5-47 2-43 (177)
323 PRK00784 cobyric acid synthase 51.0 2.4E+02 0.0051 28.3 11.7 34 6-39 5-39 (488)
324 TIGR01162 purE phosphoribosyla 50.9 1.4E+02 0.003 24.5 9.9 136 274-435 3-148 (156)
325 PF06506 PrpR_N: Propionate ca 50.6 28 0.00061 29.2 4.5 110 15-139 17-154 (176)
326 PRK07773 replicative DNA helic 50.1 90 0.0019 34.0 9.2 43 6-48 220-263 (886)
327 TIGR03029 EpsG chain length de 50.1 2E+02 0.0043 26.1 11.9 36 4-39 103-140 (274)
328 PF10093 DUF2331: Uncharacteri 50.1 85 0.0018 30.0 7.8 158 278-450 188-373 (374)
329 PRK08125 bifunctional UDP-gluc 50.0 1.6E+02 0.0035 30.8 10.9 33 106-138 74-107 (660)
330 PRK01911 ppnK inorganic polyph 49.8 22 0.00047 32.8 3.9 58 339-418 60-121 (292)
331 TIGR03371 cellulose_yhjQ cellu 49.6 1.8E+02 0.004 25.6 10.1 37 6-42 4-41 (246)
332 PF09001 DUF1890: Domain of un 49.6 24 0.00052 28.0 3.5 33 17-49 13-45 (139)
333 TIGR02655 circ_KaiC circadian 49.6 2.2E+02 0.0047 28.6 11.2 45 5-49 265-309 (484)
334 cd01968 Nitrogenase_NifE_I Nit 49.5 1.5E+02 0.0033 28.8 10.0 26 106-134 355-380 (410)
335 TIGR00665 DnaB replicative DNA 49.2 1.2E+02 0.0026 29.8 9.3 42 6-47 198-240 (434)
336 cd01019 ZnuA Zinc binding prot 49.2 1.4E+02 0.003 27.4 9.1 43 91-136 215-259 (286)
337 TIGR00682 lpxK tetraacyldisacc 49.0 62 0.0013 30.2 6.8 35 9-43 36-70 (311)
338 PLN02470 acetolactate synthase 48.7 55 0.0012 33.7 7.1 79 287-373 16-110 (585)
339 COG0859 RfaF ADP-heptose:LPS h 48.5 1.1E+02 0.0023 28.9 8.5 100 4-138 176-280 (334)
340 COG2874 FlaH Predicted ATPases 48.4 1.5E+02 0.0033 25.9 8.3 95 12-121 37-137 (235)
341 COG2861 Uncharacterized protei 48.1 1.4E+02 0.0031 26.4 8.2 39 90-133 137-178 (250)
342 COG1797 CobB Cobyrinic acid a, 48.1 25 0.00054 34.0 4.0 33 5-37 2-35 (451)
343 CHL00067 rps2 ribosomal protei 47.9 69 0.0015 28.4 6.6 35 106-140 160-196 (230)
344 PRK07004 replicative DNA helic 47.9 1.3E+02 0.0028 30.0 9.2 42 6-47 216-258 (460)
345 KOG0780 Signal recognition par 47.7 1.1E+02 0.0023 29.4 7.8 42 5-46 103-144 (483)
346 PRK02649 ppnK inorganic polyph 47.7 22 0.00048 32.9 3.6 55 342-418 67-125 (305)
347 PRK11199 tyrA bifunctional cho 47.6 1.7E+02 0.0036 28.2 9.7 32 4-40 99-131 (374)
348 TIGR02700 flavo_MJ0208 archaeo 47.5 31 0.00067 30.6 4.4 44 6-49 2-47 (234)
349 PRK03372 ppnK inorganic polyph 47.3 27 0.00059 32.4 4.1 56 341-418 70-129 (306)
350 PLN03064 alpha,alpha-trehalose 47.1 84 0.0018 34.2 8.1 97 339-454 455-561 (934)
351 PRK13896 cobyrinic acid a,c-di 46.8 2.4E+02 0.0053 27.7 10.7 35 5-39 3-38 (433)
352 PF00148 Oxidored_nitro: Nitro 46.7 1.9E+02 0.0042 27.9 10.3 34 92-134 332-365 (398)
353 COG2085 Predicted dinucleotide 46.3 1.1E+02 0.0023 26.6 7.2 30 11-42 6-35 (211)
354 TIGR00345 arsA arsenite-activa 46.2 46 0.00099 30.6 5.5 24 21-44 3-26 (284)
355 PRK09545 znuA high-affinity zi 45.9 1.5E+02 0.0033 27.6 8.9 42 91-135 239-282 (311)
356 cd01840 SGNH_hydrolase_yrhL_li 45.9 57 0.0012 26.4 5.5 38 268-306 50-87 (150)
357 TIGR02699 archaeo_AfpA archaeo 45.8 34 0.00074 28.7 4.1 35 15-49 10-46 (174)
358 PRK08840 replicative DNA helic 45.6 1.7E+02 0.0036 29.2 9.6 42 6-47 220-262 (464)
359 PRK05748 replicative DNA helic 45.6 1.3E+02 0.0029 29.7 9.0 42 6-47 206-248 (448)
360 PLN02327 CTP synthase 45.5 1.1E+02 0.0023 31.0 8.0 38 5-42 2-42 (557)
361 KOG2825 Putative arsenite-tran 45.4 1.4E+02 0.0031 26.7 7.9 44 3-46 18-62 (323)
362 PRK12921 2-dehydropantoate 2-r 45.2 42 0.0009 31.0 5.2 39 4-47 1-39 (305)
363 PRK13604 luxD acyl transferase 45.1 45 0.00097 30.9 5.1 35 4-38 37-71 (307)
364 PF02572 CobA_CobO_BtuR: ATP:c 44.8 1.3E+02 0.0029 25.1 7.5 97 4-117 4-106 (172)
365 COG1663 LpxK Tetraacyldisaccha 44.8 69 0.0015 30.0 6.2 34 9-42 55-88 (336)
366 cd03789 GT1_LPS_heptosyltransf 44.6 1.5E+02 0.0032 26.9 8.7 86 19-137 141-226 (279)
367 cd01141 TroA_d Periplasmic bin 44.6 35 0.00077 28.7 4.3 30 106-135 68-99 (186)
368 PRK12475 thiamine/molybdopteri 44.4 83 0.0018 29.8 7.0 33 2-39 23-56 (338)
369 PF12695 Abhydrolase_5: Alpha/ 44.2 50 0.0011 26.1 4.9 37 6-42 1-37 (145)
370 PRK08229 2-dehydropantoate 2-r 44.2 37 0.00081 32.0 4.8 33 4-41 3-35 (341)
371 TIGR03018 pepcterm_TyrKin exop 44.1 2.1E+02 0.0045 24.6 11.6 38 4-41 35-75 (207)
372 COG0503 Apt Adenine/guanine ph 43.9 45 0.00096 28.2 4.6 37 95-134 44-82 (179)
373 PRK06719 precorrin-2 dehydroge 43.6 44 0.00096 27.5 4.5 34 3-41 13-46 (157)
374 PLN02935 Bifunctional NADH kin 43.5 34 0.00075 33.9 4.3 55 342-418 261-319 (508)
375 PF02558 ApbA: Ketopantoate re 43.4 39 0.00086 27.3 4.2 28 22-49 12-39 (151)
376 PRK06904 replicative DNA helic 43.3 1.7E+02 0.0036 29.2 9.2 42 6-47 224-266 (472)
377 PRK12446 undecaprenyldiphospho 43.1 82 0.0018 30.0 6.9 32 340-371 86-120 (352)
378 cd03115 SRP The signal recogni 43.1 1.6E+02 0.0034 24.4 7.9 39 6-44 3-41 (173)
379 PRK13982 bifunctional SbtC-lik 42.8 38 0.00083 33.5 4.6 46 3-49 70-115 (475)
380 TIGR01005 eps_transp_fam exopo 42.7 3.2E+02 0.0069 29.3 11.9 39 4-42 546-586 (754)
381 KOG0081 GTPase Rab27, small G 42.3 67 0.0014 26.3 5.0 47 92-139 108-166 (219)
382 cd02065 B12-binding_like B12 b 42.2 65 0.0014 24.9 5.2 42 6-47 2-43 (125)
383 PF04244 DPRP: Deoxyribodipyri 42.0 33 0.00072 30.2 3.7 26 16-41 47-72 (224)
384 PRK10416 signal recognition pa 41.5 2.7E+02 0.0058 26.1 9.8 39 5-43 116-154 (318)
385 PTZ00445 p36-lilke protein; Pr 41.4 2.4E+02 0.0052 24.6 8.7 29 15-43 74-103 (219)
386 CHL00175 minD septum-site dete 41.4 2.7E+02 0.006 25.2 10.0 37 5-41 16-54 (281)
387 cd02072 Glm_B12_BD B12 binding 41.2 1.8E+02 0.0039 23.0 9.0 57 5-66 1-57 (128)
388 PRK00843 egsA NAD(P)-dependent 40.7 2.3E+02 0.0049 27.0 9.4 109 2-138 3-121 (350)
389 PF13460 NAD_binding_10: NADH( 40.7 38 0.00083 28.3 3.9 45 10-66 3-47 (183)
390 PRK04940 hypothetical protein; 40.6 68 0.0015 27.1 5.1 32 107-138 60-92 (180)
391 PRK06522 2-dehydropantoate 2-r 40.5 41 0.0009 31.0 4.4 31 4-39 1-31 (304)
392 PRK01372 ddl D-alanine--D-alan 40.5 55 0.0012 30.2 5.2 41 1-41 2-46 (304)
393 PRK06749 replicative DNA helic 40.3 2.3E+02 0.005 27.8 9.6 42 6-47 189-230 (428)
394 PHA02754 hypothetical protein; 40.2 47 0.001 21.7 3.1 26 409-434 5-30 (67)
395 PRK13010 purU formyltetrahydro 40.2 2.7E+02 0.0059 25.6 9.4 104 3-138 93-201 (289)
396 TIGR00416 sms DNA repair prote 40.1 3.1E+02 0.0067 27.3 10.4 41 6-46 97-137 (454)
397 PF02826 2-Hacid_dh_C: D-isome 39.8 39 0.00085 28.4 3.8 105 269-412 37-142 (178)
398 COG0299 PurN Folate-dependent 39.5 1.8E+02 0.0039 24.9 7.3 132 271-429 53-186 (200)
399 PRK11914 diacylglycerol kinase 39.4 61 0.0013 30.1 5.3 81 271-373 12-96 (306)
400 PRK10490 sensor protein KdpD; 39.4 1.5E+02 0.0032 32.5 8.8 40 3-42 24-63 (895)
401 PF08433 KTI12: Chromatin asso 39.2 1.6E+02 0.0034 26.9 7.7 104 6-144 4-113 (270)
402 PRK04761 ppnK inorganic polyph 39.1 44 0.00095 29.9 4.0 26 344-371 26-55 (246)
403 PRK13886 conjugal transfer pro 39.0 2.8E+02 0.0062 24.7 11.6 43 1-43 1-43 (241)
404 PLN02891 IMP cyclohydrolase 38.8 1.4E+02 0.0031 29.8 7.7 87 18-119 33-125 (547)
405 PRK03378 ppnK inorganic polyph 38.8 46 0.00099 30.7 4.2 57 340-418 60-120 (292)
406 cd07038 TPP_PYR_PDC_IPDC_like 38.6 97 0.0021 25.6 5.8 28 346-373 60-93 (162)
407 PRK04946 hypothetical protein; 38.3 17 0.00038 30.6 1.3 57 287-359 112-169 (181)
408 COG1066 Sms Predicted ATP-depe 38.2 2.4E+02 0.0051 27.5 8.7 100 6-134 96-216 (456)
409 PRK09219 xanthine phosphoribos 38.2 64 0.0014 27.6 4.7 30 106-135 49-80 (189)
410 PLN02285 methionyl-tRNA formyl 38.1 1.8E+02 0.0039 27.5 8.1 33 106-138 92-125 (334)
411 PRK01966 ddl D-alanyl-alanine 38.1 57 0.0012 30.8 4.9 42 1-42 1-46 (333)
412 TIGR03878 thermo_KaiC_2 KaiC d 38.1 3E+02 0.0066 24.8 10.6 36 6-41 39-74 (259)
413 TIGR02195 heptsyl_trn_II lipop 38.0 3.4E+02 0.0074 25.3 11.6 99 4-136 175-278 (334)
414 COG2210 Peroxiredoxin family p 37.9 68 0.0015 25.6 4.4 43 6-48 6-48 (137)
415 PF00862 Sucrose_synth: Sucros 37.8 46 0.001 32.9 4.2 119 13-138 295-434 (550)
416 PLN02331 phosphoribosylglycina 37.8 2.7E+02 0.0059 24.2 8.9 33 106-138 77-110 (207)
417 PRK13234 nifH nitrogenase redu 37.8 66 0.0014 29.7 5.2 41 1-41 1-42 (295)
418 PF10649 DUF2478: Protein of u 37.6 1.7E+02 0.0037 24.1 6.9 118 10-139 5-134 (159)
419 cd07025 Peptidase_S66 LD-Carbo 37.5 45 0.00097 30.6 4.0 29 280-308 44-72 (282)
420 COG2109 BtuR ATP:corrinoid ade 37.5 2.6E+02 0.0057 23.9 10.8 99 5-118 30-133 (198)
421 PRK14075 pnk inorganic polypho 37.5 43 0.00094 30.2 3.8 54 343-418 41-95 (256)
422 TIGR00853 pts-lac PTS system, 37.5 93 0.002 23.0 5.0 41 1-41 1-41 (95)
423 PRK04328 hypothetical protein; 37.3 2.5E+02 0.0054 25.1 8.7 43 5-47 25-67 (249)
424 PRK01185 ppnK inorganic polyph 36.9 40 0.00087 30.7 3.5 54 343-418 52-106 (271)
425 PRK14477 bifunctional nitrogen 36.8 2.8E+02 0.0061 30.4 10.4 28 106-136 388-415 (917)
426 PF01695 IstB_IS21: IstB-like 36.6 55 0.0012 27.6 4.1 45 3-47 47-91 (178)
427 TIGR03880 KaiC_arch_3 KaiC dom 36.5 1.5E+02 0.0032 25.9 7.0 44 6-49 19-62 (224)
428 KOG0832 Mitochondrial/chloropl 36.3 45 0.00098 29.0 3.4 110 15-139 92-207 (251)
429 COG0041 PurE Phosphoribosylcar 36.0 2.4E+02 0.0053 23.0 11.8 142 271-436 4-153 (162)
430 cd08172 GlyDH-like1 Glycerol d 35.9 2.6E+02 0.0056 26.5 9.0 97 20-139 12-111 (347)
431 cd01124 KaiC KaiC is a circadi 35.8 1E+02 0.0022 25.8 5.7 43 6-48 2-44 (187)
432 TIGR00745 apbA_panE 2-dehydrop 35.7 43 0.00094 30.7 3.7 28 22-49 5-32 (293)
433 CHL00076 chlB photochlorophyll 35.7 55 0.0012 33.0 4.6 27 106-135 373-399 (513)
434 PRK03094 hypothetical protein; 35.7 35 0.00076 24.3 2.3 20 20-39 10-29 (80)
435 cd02032 Bchl_like This family 35.6 64 0.0014 29.2 4.7 37 4-40 1-37 (267)
436 TIGR03772 anch_rpt_subst ancho 35.0 3.3E+02 0.0071 27.3 9.6 77 32-134 371-451 (479)
437 KOG0202 Ca2+ transporting ATPa 35.0 3.4E+02 0.0074 29.1 9.8 152 270-453 572-748 (972)
438 PF01380 SIS: SIS domain SIS d 34.9 1.3E+02 0.0029 23.2 6.0 39 11-49 60-98 (131)
439 PRK08674 bifunctional phosphog 34.8 3.7E+02 0.0081 25.3 9.9 116 7-133 81-205 (337)
440 TIGR00750 lao LAO/AO transport 34.7 2E+02 0.0044 26.5 7.9 38 5-42 36-73 (300)
441 PRK03708 ppnK inorganic polyph 34.7 53 0.0012 30.0 3.9 54 343-418 57-113 (277)
442 PF07991 IlvN: Acetohydroxy ac 34.5 61 0.0013 26.8 3.8 51 2-66 3-55 (165)
443 TIGR01278 DPOR_BchB light-inde 34.5 60 0.0013 32.8 4.6 28 106-136 363-390 (511)
444 TIGR03877 thermo_KaiC_1 KaiC d 34.0 2.8E+02 0.0062 24.4 8.5 44 5-48 23-66 (237)
445 PF13450 NAD_binding_8: NAD(P) 34.0 53 0.0012 22.4 3.0 22 21-42 9-30 (68)
446 KOG1053 Glutamate-gated NMDA-t 33.8 33 0.00071 36.2 2.6 80 56-139 685-764 (1258)
447 COG2179 Predicted hydrolase of 33.7 92 0.002 25.9 4.7 41 90-133 48-89 (175)
448 cd07062 Peptidase_S66_mccF_lik 33.7 57 0.0012 30.4 4.1 28 281-308 49-76 (308)
449 cd01137 PsaA Metal binding pro 33.6 2.9E+02 0.0062 25.4 8.7 75 33-133 178-254 (287)
450 PRK06180 short chain dehydroge 33.4 82 0.0018 28.5 5.1 37 1-40 1-37 (277)
451 PLN02240 UDP-glucose 4-epimera 33.4 68 0.0015 30.3 4.7 34 2-39 4-37 (352)
452 CHL00072 chlL photochlorophyll 33.3 81 0.0018 29.1 5.0 39 4-42 1-39 (290)
453 KOG0781 Signal recognition par 33.2 73 0.0016 31.3 4.6 45 5-49 380-424 (587)
454 PF05728 UPF0227: Uncharacteri 33.1 82 0.0018 26.8 4.6 31 109-139 61-92 (187)
455 COG0205 PfkA 6-phosphofructoki 32.9 2.2E+02 0.0047 27.0 7.6 46 260-308 59-104 (347)
456 PRK09423 gldA glycerol dehydro 32.8 2.8E+02 0.006 26.6 8.7 93 19-138 17-118 (366)
457 PRK02910 light-independent pro 32.8 66 0.0014 32.6 4.6 27 106-135 361-387 (519)
458 cd01075 NAD_bind_Leu_Phe_Val_D 32.8 61 0.0013 27.9 3.9 32 2-38 27-58 (200)
459 PRK07308 flavodoxin; Validated 32.7 86 0.0019 25.2 4.6 38 1-40 1-39 (146)
460 PRK10916 ADP-heptose:LPS hepto 32.7 3.4E+02 0.0073 25.6 9.3 103 4-136 181-288 (348)
461 PRK11064 wecC UDP-N-acetyl-D-m 32.5 64 0.0014 31.5 4.4 35 1-40 1-35 (415)
462 cd02034 CooC The accessory pro 32.3 1.1E+02 0.0024 23.6 4.8 37 5-41 1-37 (116)
463 PF10820 DUF2543: Protein of u 32.2 1.5E+02 0.0032 20.3 4.6 43 408-456 37-79 (81)
464 PRK06395 phosphoribosylamine-- 32.0 2.6E+02 0.0056 27.6 8.5 31 4-39 3-33 (435)
465 PF03698 UPF0180: Uncharacteri 32.0 42 0.00092 24.0 2.2 22 20-41 10-31 (80)
466 PRK05784 phosphoribosylamine-- 32.0 1.9E+02 0.0042 29.0 7.6 34 4-42 1-36 (486)
467 PRK06128 oxidoreductase; Provi 31.9 2.6E+02 0.0057 25.6 8.3 32 5-39 56-87 (300)
468 PRK09841 cryptic autophosphory 31.8 6.6E+02 0.014 26.8 14.4 39 4-42 531-571 (726)
469 PRK06179 short chain dehydroge 31.6 85 0.0019 28.2 4.9 37 1-40 1-37 (270)
470 PRK03501 ppnK inorganic polyph 31.4 66 0.0014 29.2 3.9 54 344-418 40-98 (264)
471 PF05225 HTH_psq: helix-turn-h 31.4 80 0.0017 19.6 3.2 24 403-426 1-25 (45)
472 cd01976 Nitrogenase_MoFe_alpha 31.2 58 0.0013 31.9 3.8 37 93-135 358-394 (421)
473 PF00070 Pyr_redox: Pyridine n 31.1 75 0.0016 22.3 3.5 23 19-41 10-32 (80)
474 COG0452 Dfp Phosphopantothenoy 31.1 63 0.0014 31.2 4.0 46 3-49 4-49 (392)
475 PRK09072 short chain dehydroge 31.1 1E+02 0.0022 27.6 5.2 32 6-40 7-38 (263)
476 TIGR01281 DPOR_bchL light-inde 31.0 85 0.0018 28.4 4.7 37 4-40 1-37 (268)
477 PF02780 Transketolase_C: Tran 31.0 85 0.0018 24.4 4.1 35 3-39 9-43 (124)
478 PRK05993 short chain dehydroge 31.0 76 0.0016 28.8 4.5 37 1-40 1-37 (277)
479 TIGR01861 ANFD nitrogenase iro 31.0 3.7E+02 0.008 27.2 9.4 26 106-134 397-422 (513)
480 PRK00885 phosphoribosylamine-- 30.8 1.9E+02 0.0042 28.2 7.5 29 4-37 1-30 (420)
481 COG0223 Fmt Methionyl-tRNA for 30.7 56 0.0012 30.2 3.4 39 3-46 1-39 (307)
482 PF00391 PEP-utilizers: PEP-ut 30.5 66 0.0014 22.9 3.1 29 106-134 29-59 (80)
483 COG0504 PyrG CTP synthase (UTP 30.4 99 0.0021 30.5 5.0 39 4-42 1-42 (533)
484 COG0240 GpsA Glycerol-3-phosph 30.4 1.1E+02 0.0023 28.7 5.1 34 4-42 2-35 (329)
485 COG4088 Predicted nucleotide k 30.2 64 0.0014 28.0 3.3 103 6-140 4-112 (261)
486 cd00316 Oxidoreductase_nitroge 30.2 3.3E+02 0.0072 26.2 9.0 27 106-135 347-373 (399)
487 CHL00194 ycf39 Ycf39; Provisio 30.2 84 0.0018 29.2 4.7 32 5-40 2-33 (317)
488 KOG1509 Predicted nucleic acid 30.2 1.4E+02 0.003 25.5 5.2 77 29-113 7-83 (209)
489 PRK14619 NAD(P)H-dependent gly 30.1 65 0.0014 29.9 3.9 35 2-41 3-37 (308)
490 COG0205 PfkA 6-phosphofructoki 30.0 1.1E+02 0.0024 28.9 5.2 115 3-134 2-124 (347)
491 COG2236 Predicted phosphoribos 30.0 1.2E+02 0.0026 25.9 5.0 47 92-139 15-64 (192)
492 PF13419 HAD_2: Haloacid dehal 29.9 3E+02 0.0064 22.2 9.0 92 20-134 82-176 (176)
493 PRK14568 vanB D-alanine--D-lac 29.8 79 0.0017 29.9 4.4 41 1-41 1-45 (343)
494 PF08766 DEK_C: DEK C terminal 29.7 1.6E+02 0.0034 19.0 5.0 46 403-451 1-51 (54)
495 PRK09739 hypothetical protein; 29.7 1.4E+02 0.003 25.6 5.6 38 1-38 1-41 (199)
496 PF03403 PAF-AH_p_II: Platelet 29.6 52 0.0011 31.7 3.2 40 3-42 99-138 (379)
497 PRK07231 fabG 3-ketoacyl-(acyl 29.6 1.1E+02 0.0024 27.0 5.2 28 12-41 12-39 (251)
498 cd06533 Glyco_transf_WecG_TagA 29.6 3.3E+02 0.0072 22.6 9.4 91 20-134 35-130 (171)
499 PF06418 CTP_synth_N: CTP synt 29.5 68 0.0015 28.9 3.5 39 4-42 1-42 (276)
500 PF01497 Peripla_BP_2: Peripla 29.4 82 0.0018 27.6 4.3 33 106-138 59-93 (238)
No 1
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=2.4e-68 Score=513.86 Aligned_cols=433 Identities=32% Similarity=0.614 Sum_probs=341.6
Q ss_pred CCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHH
Q 012744 3 SPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLL 82 (457)
Q Consensus 3 ~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (457)
+.||+++|+|++||++|++.||+.|+.+|++|||++++.+...+.+... ..++++++.+|++++.. ...++..+.
T Consensus 6 ~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~----~~~~i~~v~lp~g~~~~-~~~~~~~l~ 80 (448)
T PLN02562 6 RPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLD----PKLGITFMSISDGQDDD-PPRDFFSIE 80 (448)
T ss_pred CcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccC----CCCCEEEEECCCCCCCC-ccccHHHHH
Confidence 5699999999999999999999999999999999999988765544311 11369999999877542 222344445
Q ss_pred HHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEEEechhhHHHHHHhhhhhhhhccCCCCCCC
Q 012744 83 EKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAVVVITSAATVALTFSIPKLIEDGVINSNGT 162 (457)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 162 (457)
..+...+.+.++++++.+... ..++|||+|.+..|+..+|+++|||++.++++++..+..+.+++.....+..+..+.
T Consensus 81 ~a~~~~~~~~l~~ll~~l~~~--~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 158 (448)
T PLN02562 81 NSMENTMPPQLERLLHKLDED--GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISETGC 158 (448)
T ss_pred HHHHHhchHHHHHHHHHhcCC--CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhccccccccc
Confidence 555446778888888876431 235899999999999999999999999999999887777766655443332221111
Q ss_pred CccccccccCCCCCCCccccccccccCCcchhhHHHHHHHHHHHhhhcCcEEEEcCcccccchhhc---------cCCce
Q 012744 163 PIKEQMIQLAPNMPAISTGELFWTGIGDLTMQKFFFDFMVKNMRATRAADFQLCNSTYELEGGAFS---------MIPEL 233 (457)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~---------~~~~~ 233 (457)
+...+.+..+|+++.+...+++ .++............+.+..+...+++.+++|||.+||+.... ..|++
T Consensus 159 ~~~~~~~~~~Pg~~~l~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~v 237 (448)
T PLN02562 159 PRQLEKICVLPEQPLLSTEDLP-WLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQNPQI 237 (448)
T ss_pred cccccccccCCCCCCCChhhCc-chhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhccccCCCE
Confidence 2111233467888878888887 4332222222334555566666778899999999999985322 35789
Q ss_pred eeeCcccCCCCCCCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCcc-cCCHHHHHHHHHHHhhcCCcEEEEEcCCCCCC
Q 012744 234 LPIGPLLASNRLGNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHT-VLEQNQFQELALGLEICNRSFLWVVRPDITND 312 (457)
Q Consensus 234 ~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~-~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~ 312 (457)
+.|||++............++.+.++.+|||.++++++|||||||+. .++.+++++++.+++..+++|||++...
T Consensus 238 ~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~---- 313 (448)
T PLN02562 238 LQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPV---- 313 (448)
T ss_pred EEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCC----
Confidence 99999987542110011224556678899999988899999999985 6789999999999999999999999643
Q ss_pred CcCCCchhHHHHhcCCceeecCCCchhhccCCCccceeeccCcchhhhhhhcCCceeccccccchhhhHHhhhhhhceeE
Q 012744 313 ANDAYPEGFRERVAARGQMISWSPQQKVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGL 392 (457)
Q Consensus 313 ~~~~~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~ 392 (457)
....+|++|.++.++|+++++|+||.+||+|+++++|||||||||++|++++|||||++|+++||+.||+++++.+|+|+
T Consensus 314 ~~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~ 393 (448)
T PLN02562 314 WREGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGV 393 (448)
T ss_pred chhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCcee
Confidence 12358889999999999999999999999999999999999999999999999999999999999999999987579998
Q ss_pred EeeccCCCccCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHh
Q 012744 393 RLERNQSGIIGREEIKNKVDQVLGDQNFKARALKLKEKALSSVREGGSSNKAIQNFVQSIK 453 (457)
Q Consensus 393 ~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 453 (457)
.+. ++++++|+++|+++|+|++||+||+++++++.++ .+||||.+++++||++++
T Consensus 394 ~~~-----~~~~~~l~~~v~~~l~~~~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 394 RIS-----GFGQKEVEEGLRKVMEDSGMGERLMKLRERAMGE-EARLRSMMNFTTLKDELK 448 (448)
T ss_pred EeC-----CCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhC
Confidence 883 4799999999999999999999999999999887 567999999999999874
No 2
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=1.3e-66 Score=499.27 Aligned_cols=444 Identities=24% Similarity=0.429 Sum_probs=335.8
Q ss_pred CCCCEEEEEcCCCCcChHHHHHHHHHHHhCC--CeEEEEeCCcch-hHHHhhhcCCCCCCCCeEEEecCCCCC-CC-CCc
Q 012744 1 MSSPHVVVIPNPEQGHVIPLLELSQNLAKHG--LRITFVNSEYNH-KRVLESLEGKNYIGEQIHLVSIPDGME-PW-DDR 75 (457)
Q Consensus 1 m~~~~vl~~~~~~~GH~~p~~~la~~L~~~G--h~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~ 75 (457)
|++.||+++|++++||++|++.||+.|+.+| ..|||++++.+. ..+...........++++|+.+|+... .. ...
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~ 80 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGT 80 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCccccc
Confidence 8999999999999999999999999999998 999999998765 333222111111123699999996432 11 112
Q ss_pred chHHHHHHHHHHhcchH----HHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEEEechhhHHHHHHhhhhhh
Q 012744 76 SDMRKLLEKRLQVMPGK----LEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAVVVITSAATVALTFSIPKL 151 (457)
Q Consensus 76 ~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~ 151 (457)
.+....+..+...+.+. +.++++...... .+++|||+|.+.+|+..+|+++|||++.++++++..+..+.+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~ 159 (468)
T PLN02207 81 QSVEAYVYDVIEKNIPLVRNIVMDILSSLALDG-VKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADR 159 (468)
T ss_pred cCHHHHHHHHHHhcchhHHHHHHHHHHHhccCC-CCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhc
Confidence 33444444444455343 444444321111 2349999999999999999999999999999999888777666543
Q ss_pred hhcc-CCCCCCCCccccccccCCCC-CCCccccccccccCCcchhhHHHHHHHHHHHhhhcCcEEEEcCcccccchh---
Q 012744 152 IEDG-VINSNGTPIKEQMIQLAPNM-PAISTGELFWTGIGDLTMQKFFFDFMVKNMRATRAADFQLCNSTYELEGGA--- 226 (457)
Q Consensus 152 ~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~--- 226 (457)
.... ... .+... ....+|++ +.+...+++ .++..... ...+.+......+++.+++||++++|.+.
T Consensus 160 ~~~~~~~~---~~~~~-~~~~vPgl~~~l~~~dlp-~~~~~~~~----~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~ 230 (468)
T PLN02207 160 HSKDTSVF---VRNSE-EMLSIPGFVNPVPANVLP-SALFVEDG----YDAYVKLAILFTKANGILVNSSFDIEPYSVNH 230 (468)
T ss_pred cccccccC---cCCCC-CeEECCCCCCCCChHHCc-chhcCCcc----HHHHHHHHHhcccCCEEEEEchHHHhHHHHHH
Confidence 2110 000 01111 22368888 578888888 33322111 23334444456889999999999999863
Q ss_pred ---hccCCceeeeCcccCCCCCCCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhcCCcEEE
Q 012744 227 ---FSMIPELLPIGPLLASNRLGNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTVLEQNQFQELALGLEICNRSFLW 303 (457)
Q Consensus 227 ---~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~ 303 (457)
++..|+++.|||++.......+ ...+..+.++.+|||.++++++|||||||...++.+++++++.+|+..+++|||
T Consensus 231 ~~~~~~~p~v~~VGPl~~~~~~~~~-~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW 309 (468)
T PLN02207 231 FLDEQNYPSVYAVGPIFDLKAQPHP-EQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLW 309 (468)
T ss_pred HHhccCCCcEEEecCCcccccCCCC-ccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEE
Confidence 2345789999999875422100 000123467999999998889999999999999999999999999999999999
Q ss_pred EEcCCCCCCCcCCCchhHHHHhcCCceeecCCCchhhccCCCccceeeccCcchhhhhhhcCCceeccccccchhhhHHh
Q 012744 304 VVRPDITNDANDAYPEGFRERVAARGQMISWSPQQKVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPFFADQFMNTTY 383 (457)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~ 383 (457)
++..... ...+.+|++|.+++++|+.+++|+||.+||+|+++|+|||||||||++||+++|||||++|++.||+.||++
T Consensus 310 ~~r~~~~-~~~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~ 388 (468)
T PLN02207 310 SLRTEEV-TNDDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFL 388 (468)
T ss_pred EEeCCCc-cccccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhhHHH
Confidence 9985311 112358899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhceeEEeecc----CCCccCHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCC
Q 012744 384 ICDVWKVGLRLERN----QSGIIGREEIKNKVDQVLG--DQNFKARALKLKEKALSSVREGGSSNKAIQNFVQSIKQWP 456 (457)
Q Consensus 384 v~~~lG~g~~l~~~----~~~~~~~~~l~~~i~~~l~--~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 456 (457)
+++.+|+|+.+..+ ..+.+++++|+++|+++|+ +++||+||+++++.+++++.+||||.+++++|++++...+
T Consensus 389 ~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~~~~~ 467 (468)
T PLN02207 389 MVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNKDNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDVIGIK 467 (468)
T ss_pred HHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhcc
Confidence 87767999987431 1134699999999999997 5799999999999999999999999999999999998654
No 3
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.1e-66 Score=500.65 Aligned_cols=432 Identities=29% Similarity=0.541 Sum_probs=338.1
Q ss_pred CCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCC-CcchHHHH
Q 012744 3 SPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWD-DRSDMRKL 81 (457)
Q Consensus 3 ~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 81 (457)
+.||+++|++++||++|++.||+.|+.+|+.|||++++.+... .. ....++++..+|+++++.. .......+
T Consensus 7 ~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~--~~-----~~~~~i~~~~ip~glp~~~~~~~~~~~~ 79 (451)
T PLN02410 7 RRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFS--PS-----DDFTDFQFVTIPESLPESDFKNLGPIEF 79 (451)
T ss_pred CCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccc--cc-----cCCCCeEEEeCCCCCCcccccccCHHHH
Confidence 4699999999999999999999999999999999999876421 10 1113699999999887642 22223355
Q ss_pred HHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEEEechhhHHHHHHhhhhhhhhccC-CCCC
Q 012744 82 LEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAVVVITSAATVALTFSIPKLIEDGV-INSN 160 (457)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~-~~~~ 160 (457)
+..+.+.+...++++++.+..+.+.+++|||+|.+..|+..+|+++|||++.+++++++.+..+.+++.+...+. .+..
T Consensus 80 ~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~~ 159 (451)
T PLN02410 80 LHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAPLK 159 (451)
T ss_pred HHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCCcc
Confidence 666666677788888887643222567999999999999999999999999999999988877666554443221 1100
Q ss_pred CCCccccccccCCCCCCCccccccccccCCcchhhHHHHHHHHHHHhhhcCcEEEEcCcccccchhhcc-----CCceee
Q 012744 161 GTPIKEQMIQLAPNMPAISTGELFWTGIGDLTMQKFFFDFMVKNMRATRAADFQLCNSTYELEGGAFSM-----IPELLP 235 (457)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~-----~~~~~~ 235 (457)
... .+....+|+++++...+++ ...... . ......+... ....+++.+++|||.+||+...+. .+++++
T Consensus 160 ~~~--~~~~~~iPg~~~~~~~dlp-~~~~~~-~-~~~~~~~~~~-~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~v~~ 233 (451)
T PLN02410 160 EPK--GQQNELVPEFHPLRCKDFP-VSHWAS-L-ESIMELYRNT-VDKRTASSVIINTASCLESSSLSRLQQQLQIPVYP 233 (451)
T ss_pred ccc--cCccccCCCCCCCChHHCc-chhcCC-c-HHHHHHHHHH-hhcccCCEEEEeChHHhhHHHHHHHHhccCCCEEE
Confidence 000 0112357888877777776 322111 1 1122222222 234678999999999999876543 258999
Q ss_pred eCcccCCCCCCCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhcCCcEEEEEcCCCCCC--C
Q 012744 236 IGPLLASNRLGNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTVLEQNQFQELALGLEICNRSFLWVVRPDITND--A 313 (457)
Q Consensus 236 vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~--~ 313 (457)
|||++...... ...+..+.++.+|||.+++++||||||||...++.+++.+++.+|+..+++|||++......+ .
T Consensus 234 vGpl~~~~~~~---~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~ 310 (451)
T PLN02410 234 IGPLHLVASAP---TSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEW 310 (451)
T ss_pred ecccccccCCC---ccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccch
Confidence 99998643211 111233456899999998899999999999999999999999999999999999997431100 1
Q ss_pred cCCCchhHHHHhcCCceeecCCCchhhccCCCccceeeccCcchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEE
Q 012744 314 NDAYPEGFRERVAARGQMISWSPQQKVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLR 393 (457)
Q Consensus 314 ~~~~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~ 393 (457)
...+|++|.|++++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++++.||+|+.
T Consensus 311 ~~~lp~~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~ 390 (451)
T PLN02410 311 IESLPKEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQ 390 (451)
T ss_pred hhcCChhHHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEE
Confidence 23489999999999999999999999999999999999999999999999999999999999999999999886799999
Q ss_pred eeccCCCccCHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhc
Q 012744 394 LERNQSGIIGREEIKNKVDQVLGDQ---NFKARALKLKEKALSSVREGGSSNKAIQNFVQSIKQ 454 (457)
Q Consensus 394 l~~~~~~~~~~~~l~~~i~~~l~~~---~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 454 (457)
+. +.+++++|+++|+++|.++ +||++|+++++++++++.+||||.+++++||+.++.
T Consensus 391 ~~----~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 391 VE----GDLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRT 450 (451)
T ss_pred eC----CcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 95 5689999999999999775 799999999999999999999999999999999864
No 4
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=2.6e-66 Score=496.30 Aligned_cols=432 Identities=28% Similarity=0.500 Sum_probs=339.4
Q ss_pred CCCCEEEEEcCCCCcChHHHHHHHHHHHh-CCCeEEEEeCCcc-hhHHHhhhcCCCCCCCCeEEEecCCCCCCCC--Ccc
Q 012744 1 MSSPHVVVIPNPEQGHVIPLLELSQNLAK-HGLRITFVNSEYN-HKRVLESLEGKNYIGEQIHLVSIPDGMEPWD--DRS 76 (457)
Q Consensus 1 m~~~~vl~~~~~~~GH~~p~~~la~~L~~-~Gh~Vt~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 76 (457)
|++.||+++|++++||++|++.||+.|+. +|+.|||++++.+ ....... ....++++++.++++++... ...
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~----~~~~~~i~~~~i~dglp~g~~~~~~ 76 (455)
T PLN02152 1 MAPPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPN----HNNVENLSFLTFSDGFDDGVISNTD 76 (455)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhcc----CCCCCCEEEEEcCCCCCCccccccc
Confidence 78899999999999999999999999996 7999999999864 2211111 11123699999998887652 234
Q ss_pred hHHHHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEEEechhhHHHHHHhhhhhhhhccC
Q 012744 77 DMRKLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAVVVITSAATVALTFSIPKLIEDGV 156 (457)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~ 156 (457)
+....+..+...+.+.++++++.+.... .+++|||+|.+.+|+..+|+++|||++.+++++++.+..+++++...
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~-~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~---- 151 (455)
T PLN02152 77 DVQNRLVNFERNGDKALSDFIEANLNGD-SPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN---- 151 (455)
T ss_pred cHHHHHHHHHHhccHHHHHHHHHhhccC-CCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC----
Confidence 5556666677788889999998865322 34599999999999999999999999999999998888776543210
Q ss_pred CCCCCCCccccccccCCCCCCCccccccccccCCcchhhHHHHHHHHHHHhhh--cCcEEEEcCcccccchhhccC--Cc
Q 012744 157 INSNGTPIKEQMIQLAPNMPAISTGELFWTGIGDLTMQKFFFDFMVKNMRATR--AADFQLCNSTYELEGGAFSMI--PE 232 (457)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~s~~~le~~~~~~~--~~ 232 (457)
.....+|+++.+...+++ .++............+.+..+... .++.+++|||.+||....+.. .+
T Consensus 152 ----------~~~~~iPglp~l~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~ 220 (455)
T PLN02152 152 ----------NSVFEFPNLPSLEIRDLP-SFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPNIE 220 (455)
T ss_pred ----------CCeeecCCCCCCchHHCc-hhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhcCC
Confidence 012257888878888888 444322222233344444444332 357999999999998876655 26
Q ss_pred eeeeCcccCCCC--CCCCCC--CCCCCcchhhHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhcCCcEEEEEcCC
Q 012744 233 LLPIGPLLASNR--LGNSAG--YFLPEDSKCLEWLDQRQANSVIYVAFGSHTVLEQNQFQELALGLEICNRSFLWVVRPD 308 (457)
Q Consensus 233 ~~~vGpl~~~~~--~~~~~~--~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~ 308 (457)
++.|||++.... ...... ..+..+.++.+|||.+++++||||||||+..++.+++++++.+|+..+++|||++...
T Consensus 221 v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~ 300 (455)
T PLN02152 221 MVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDK 300 (455)
T ss_pred EEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecC
Confidence 999999975321 000000 0123356799999999888999999999999999999999999999999999999752
Q ss_pred CCC------CC--cCCCchhHHHHhcCCceeecCCCchhhccCCCccceeeccCcchhhhhhhcCCceeccccccchhhh
Q 012744 309 ITN------DA--NDAYPEGFRERVAARGQMISWSPQQKVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPFFADQFMN 380 (457)
Q Consensus 309 ~~~------~~--~~~~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~n 380 (457)
... .. ...+|++|.|+.++|+++.+|+||.+||+|+++|+||||||+||+.|++++|||+|++|++.||+.|
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~n 380 (455)
T PLN02152 301 LNREAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPAN 380 (455)
T ss_pred cccccccccccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHH
Confidence 110 00 1124789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 012744 381 TTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGDQ--NFKARALKLKEKALSSVREGGSSNKAIQNFVQSI 452 (457)
Q Consensus 381 a~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~~--~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 452 (457)
|+++++.||+|+.+..+..+.+++++|+++|+++|+|+ +||+||+++++.++++..+||+|.+++++||+++
T Consensus 381 a~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i 454 (455)
T PLN02152 381 AKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEKSVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTL 454 (455)
T ss_pred HHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 99999867888887643234569999999999999765 5899999999999999999999999999999986
No 5
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=6.4e-66 Score=496.83 Aligned_cols=446 Identities=31% Similarity=0.541 Sum_probs=345.3
Q ss_pred CCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhh--cCC--C-CCCCCeEEEecCCCCCCCC-Ccc
Q 012744 3 SPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESL--EGK--N-YIGEQIHLVSIPDGMEPWD-DRS 76 (457)
Q Consensus 3 ~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~--~~~--~-~~~~~~~~~~~~~~~~~~~-~~~ 76 (457)
+.||+++|+|++||++|++.||+.|+.+|..|||++++.+...+.... .+. . .....++|..+|++++... ...
T Consensus 7 ~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~~~~~~~ 86 (480)
T PLN02555 7 LVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAEDDPRRQ 86 (480)
T ss_pred CCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCCCccccc
Confidence 689999999999999999999999999999999999998776654211 010 0 1112377777888886542 233
Q ss_pred hHHHHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEEEechhhHHHHHHhhhhhhhhccC
Q 012744 77 DMRKLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAVVVITSAATVALTFSIPKLIEDGV 156 (457)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~ 156 (457)
++..++..+.+.+.+.++++++.+.... ..++|||+|.+..|+..+|+++|||++.+++++++.+..+.+++. +.
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~~----~~ 161 (480)
T PLN02555 87 DLDLYLPQLELVGKREIPNLVKRYAEQG-RPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYYH----GL 161 (480)
T ss_pred CHHHHHHHHHHhhhHHHHHHHHHHhccC-CCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHhh----cC
Confidence 4445566665567778888888764321 345999999999999999999999999999999988888776532 21
Q ss_pred CCCCCCCccccccccCCCCCCCccccccccccCCcchhhHHHHHHHHHHHhhhcCcEEEEcCcccccchhhccC---Cce
Q 012744 157 INSNGTPIKEQMIQLAPNMPAISTGELFWTGIGDLTMQKFFFDFMVKNMRATRAADFQLCNSTYELEGGAFSMI---PEL 233 (457)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~---~~~ 233 (457)
.+.....+.. ....+|++|.+...+++ .++............+.+..+...+++.+++|||.+||....... ..+
T Consensus 162 ~~~~~~~~~~-~~~~iPglp~l~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~~v 239 (480)
T PLN02555 162 VPFPTETEPE-IDVQLPCMPLLKYDEIP-SFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSKLCPI 239 (480)
T ss_pred CCcccccCCC-ceeecCCCCCcCHhhCc-ccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhhCCCE
Confidence 1100011111 22358999888888888 443321112233444555556667889999999999998765433 138
Q ss_pred eeeCcccCCCCC--CCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhcCCcEEEEEcCCCCC
Q 012744 234 LPIGPLLASNRL--GNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTVLEQNQFQELALGLEICNRSFLWVVRPDITN 311 (457)
Q Consensus 234 ~~vGpl~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~ 311 (457)
+.|||++..... .......+..+.+|.+|||.+++++||||||||+..++.+++.+++.+++..+++|||++......
T Consensus 240 ~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~~~~ 319 (480)
T PLN02555 240 KPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPPHKD 319 (480)
T ss_pred EEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecCccc
Confidence 999999764321 110111234567899999999888999999999999999999999999999999999998742110
Q ss_pred --CCcCCCchhHHHHhcCCceeecCCCchhhccCCCccceeeccCcchhhhhhhcCCceeccccccchhhhHHhhhhhhc
Q 012744 312 --DANDAYPEGFRERVAARGQMISWSPQQKVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWK 389 (457)
Q Consensus 312 --~~~~~~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG 389 (457)
.....+|++|.+++++|+++++|+||.+||.|+++++|||||||||++||+++|||||++|++.||+.||+++++.||
T Consensus 320 ~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~g 399 (480)
T PLN02555 320 SGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFK 399 (480)
T ss_pred ccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhC
Confidence 012357889998999999999999999999999999999999999999999999999999999999999999988789
Q ss_pred eeEEeecc--CCCccCHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcC
Q 012744 390 VGLRLERN--QSGIIGREEIKNKVDQVLGDQ---NFKARALKLKEKALSSVREGGSSNKAIQNFVQSIKQW 455 (457)
Q Consensus 390 ~g~~l~~~--~~~~~~~~~l~~~i~~~l~~~---~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 455 (457)
+|+.+... +.+.+++++|.++|+++|+++ ++|+||++|++++++++.+||||.+++++||+++.+.
T Consensus 400 vGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~~~ 470 (480)
T PLN02555 400 TGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLVRK 470 (480)
T ss_pred ceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc
Confidence 99999531 124689999999999999754 7999999999999999999999999999999999754
No 6
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=7.4e-66 Score=492.35 Aligned_cols=425 Identities=31% Similarity=0.581 Sum_probs=335.4
Q ss_pred CCC--CEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCC--CCcc
Q 012744 1 MSS--PHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPW--DDRS 76 (457)
Q Consensus 1 m~~--~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 76 (457)
|+| .||+++|++++||++|++.||+.|+.+|+.|||++++.+...+... ..++++++.+|+++++. +...
T Consensus 1 ~~~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~------~~~~i~~~~ipdglp~~~~~~~~ 74 (449)
T PLN02173 1 MEKMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD------PSSPISIATISDGYDQGGFSSAG 74 (449)
T ss_pred CCCCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC------CCCCEEEEEcCCCCCCccccccc
Confidence 664 5899999999999999999999999999999999999876544321 11369999999988873 2333
Q ss_pred hHHHHHHHHHHhcchHHHHHHHHHhcCCCCCe-eEEEecCCcchHHHHHHHcCCceEEEechhhHHHHHHhhhhhhhhcc
Q 012744 77 DMRKLLEKRLQVMPGKLEGLIEEIHGREGEKT-ACLIADGAAGWAIEVAEKMKLRRAVVVITSAATVALTFSIPKLIEDG 155 (457)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~ 155 (457)
+...++..+.+.+.+.++++++.+... .+| ||||+|.+.+|+..+|+++|||++.+++++++....+.+ +.. ...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~-~~~-~~~ 150 (449)
T PLN02173 75 SVPEYLQNFKTFGSKTVADIIRKHQST--DNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL-SYI-NNG 150 (449)
T ss_pred CHHHHHHHHHHhhhHHHHHHHHHhhcc--CCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh-HHh-ccC
Confidence 455677777667788899998876432 245 999999999999999999999999999988776644332 111 100
Q ss_pred CCCCCCCCccccccccCCCCCCCccccccccccCCcchhhHHHHHHHHHHHhhhcCcEEEEcCcccccchhhccC---Cc
Q 012744 156 VINSNGTPIKEQMIQLAPNMPAISTGELFWTGIGDLTMQKFFFDFMVKNMRATRAADFQLCNSTYELEGGAFSMI---PE 232 (457)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~---~~ 232 (457)
.....+|+++.+...+++ .++............+.+..+...+++.+++||+.+||+...+.. ++
T Consensus 151 -----------~~~~~~pg~p~l~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~ 218 (449)
T PLN02173 151 -----------SLTLPIKDLPLLELQDLP-TFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKVCP 218 (449)
T ss_pred -----------CccCCCCCCCCCChhhCC-hhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhcCC
Confidence 011246788877778887 433322222233444445555678899999999999998765443 46
Q ss_pred eeeeCcccCCCC----C-C-CC-CCCCC--CCcchhhHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhcCCcEEE
Q 012744 233 LLPIGPLLASNR----L-G-NS-AGYFL--PEDSKCLEWLDQRQANSVIYVAFGSHTVLEQNQFQELALGLEICNRSFLW 303 (457)
Q Consensus 233 ~~~vGpl~~~~~----~-~-~~-~~~~~--~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~ 303 (457)
++.|||++.... . . .. ....| ..+++|.+|||.++++++|||||||+...+.+++.+++.++ .+.+|+|
T Consensus 219 v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flW 296 (449)
T PLN02173 219 VLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLW 296 (449)
T ss_pred eeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEE
Confidence 999999974210 0 0 00 01112 23456999999999899999999999989999999999999 6788999
Q ss_pred EEcCCCCCCCcCCCchhHHHHh-cCCceeecCCCchhhccCCCccceeeccCcchhhhhhhcCCceeccccccchhhhHH
Q 012744 304 VVRPDITNDANDAYPEGFRERV-AARGQMISWSPQQKVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPFFADQFMNTT 382 (457)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~-~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~ 382 (457)
++... ....+|++|.+++ ++|+++++|+||.+||+|+++++|||||||||++|++++|||||++|++.||+.||+
T Consensus 297 vvr~~----~~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~ 372 (449)
T PLN02173 297 VVRAS----EESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAK 372 (449)
T ss_pred EEecc----chhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHH
Confidence 99743 2245888999888 588999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhceeEEeeccC-CCccCHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHh
Q 012744 383 YICDVWKVGLRLERNQ-SGIIGREEIKNKVDQVLGDQ---NFKARALKLKEKALSSVREGGSSNKAIQNFVQSIK 453 (457)
Q Consensus 383 ~v~~~lG~g~~l~~~~-~~~~~~~~l~~~i~~~l~~~---~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 453 (457)
++++.||+|+.+..++ ++.+++++|+++|+++|.|+ ++|+||+++++++++++.+||||.+++++|++++.
T Consensus 373 ~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 373 YIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKIQ 447 (449)
T ss_pred HHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Confidence 9998789999997532 13479999999999999764 68999999999999999999999999999999885
No 7
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=6.9e-65 Score=490.28 Aligned_cols=429 Identities=28% Similarity=0.482 Sum_probs=329.9
Q ss_pred CCEEEEEcCCCCcChHHHHHHHHH--HHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHH
Q 012744 3 SPHVVVIPNPEQGHVIPLLELSQN--LAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRK 80 (457)
Q Consensus 3 ~~~vl~~~~~~~GH~~p~~~la~~--L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (457)
+.||+++|+|++||++|++.||+. |++||++|||++++.+.+.+.... .....+++..+|+++++... .+...
T Consensus 8 ~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~----~~~~~~~~~~~~~glp~~~~-~~~~~ 82 (456)
T PLN02210 8 ETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVE----KPRRPVDLVFFSDGLPKDDP-RAPET 82 (456)
T ss_pred CCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhcccc----CCCCceEEEECCCCCCCCcc-cCHHH
Confidence 579999999999999999999999 569999999999998876653221 11246888888888776532 23445
Q ss_pred HHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEEEechhhHHHHHHhhhhhhhhccCCCCC
Q 012744 81 LLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAVVVITSAATVALTFSIPKLIEDGVINSN 160 (457)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 160 (457)
++..+.+.+.+.++++++. .+||+||+|.+..|+..+|+++|||.+.+++.++..+..+.+++.. ....+.
T Consensus 83 ~~~~~~~~~~~~l~~~l~~------~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~--~~~~~~- 153 (456)
T PLN02210 83 LLKSLNKVGAKNLSKIIEE------KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMK--TNSFPD- 153 (456)
T ss_pred HHHHHHHhhhHHHHHHHhc------CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhc--cCCCCc-
Confidence 5555555666666666655 6799999999999999999999999999999888877766554321 111110
Q ss_pred CCCccccccccCCCCCCCccccccccccCCcchhhHHHHHHHHHHHhhhcCcEEEEcCcccccchhhcc---CCceeeeC
Q 012744 161 GTPIKEQMIQLAPNMPAISTGELFWTGIGDLTMQKFFFDFMVKNMRATRAADFQLCNSTYELEGGAFSM---IPELLPIG 237 (457)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~---~~~~~~vG 237 (457)
. ........+|+++.+...+++ ..+..... ..+...+.+..+....++.+++||+.++|....+. .+++++||
T Consensus 154 -~-~~~~~~~~~Pgl~~~~~~dl~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~v~~VG 229 (456)
T PLN02210 154 -L-EDLNQTVELPALPLLEVRDLP-SFMLPSGG-AHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMADLKPVIPIG 229 (456)
T ss_pred -c-cccCCeeeCCCCCCCChhhCC-hhhhcCCc-hHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhhcCCEEEEc
Confidence 0 000112357888777777777 33322221 12223333333445678999999999999876554 35799999
Q ss_pred cccCCC---CCCC---C--CCCCCCCcchhhHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhcCCcEEEEEcCCC
Q 012744 238 PLLASN---RLGN---S--AGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTVLEQNQFQELALGLEICNRSFLWVVRPDI 309 (457)
Q Consensus 238 pl~~~~---~~~~---~--~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~ 309 (457)
|++... .... . ....|..+.+|.+|+|.++++++|||||||......+++.+++.+|+..+++|||+++...
T Consensus 230 Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~ 309 (456)
T PLN02210 230 PLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKE 309 (456)
T ss_pred ccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCc
Confidence 997521 1000 0 0112455678999999998899999999999888999999999999999999999997431
Q ss_pred CCCCcCCCchhHHHHh-cCCceeecCCCchhhccCCCccceeeccCcchhhhhhhcCCceeccccccchhhhHHhhhhhh
Q 012744 310 TNDANDAYPEGFRERV-AARGQMISWSPQQKVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVW 388 (457)
Q Consensus 310 ~~~~~~~~~~~~~~~~-~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~l 388 (457)
....+..|.++. ++++.+++|+||.+||+|+++++|||||||||++|++++|||||++|++.||+.||+++++.+
T Consensus 310 ----~~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~ 385 (456)
T PLN02210 310 ----KAQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVF 385 (456)
T ss_pred ----cccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHHHHh
Confidence 112334566666 488888999999999999999999999999999999999999999999999999999998757
Q ss_pred ceeEEeeccC-CCccCHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHh
Q 012744 389 KVGLRLERNQ-SGIIGREEIKNKVDQVLGDQ---NFKARALKLKEKALSSVREGGSSNKAIQNFVQSIK 453 (457)
Q Consensus 389 G~g~~l~~~~-~~~~~~~~l~~~i~~~l~~~---~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 453 (457)
|+|+.+..++ ++.+++++|+++|+++|.++ ++|+||++|++.+++++++||||.+++++|++++.
T Consensus 386 g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 386 GIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred CeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 9999996422 24689999999999999876 49999999999999999999999999999999886
No 8
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=6.2e-65 Score=495.83 Aligned_cols=440 Identities=24% Similarity=0.434 Sum_probs=330.5
Q ss_pred CCEEEEEcCCCCcChHHHHHHHHHHHhCC--CeEEEEeCCcchhHHH--hhhcC-CC-CCCCCeEEEecCCCCCCCCCcc
Q 012744 3 SPHVVVIPNPEQGHVIPLLELSQNLAKHG--LRITFVNSEYNHKRVL--ESLEG-KN-YIGEQIHLVSIPDGMEPWDDRS 76 (457)
Q Consensus 3 ~~~vl~~~~~~~GH~~p~~~la~~L~~~G--h~Vt~~~~~~~~~~~~--~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~ 76 (457)
|+||+++|++++||++|++.||+.|+.+| ..|||++++.+..... ..... .. ...++++++.+|++........
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~ 81 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTTEDP 81 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCcccch
Confidence 78999999999999999999999999998 8899999988754221 10011 01 1123699999997764321111
Q ss_pred hHHHHHHHHHHhcchHHHHHHHHHhcC----CCCCeeEEEecCCcchHHHHHHHcCCceEEEechhhHHHHHHhhhhhhh
Q 012744 77 DMRKLLEKRLQVMPGKLEGLIEEIHGR----EGEKTACLIADGAAGWAIEVAEKMKLRRAVVVITSAATVALTFSIPKLI 152 (457)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~ 152 (457)
. +..+...+...+++.++.+... .+...+|||+|.+..|+..+|+++|||++.+++++++.+..+.+++...
T Consensus 82 ~----~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~~ 157 (481)
T PLN02554 82 T----FQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQMLY 157 (481)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhhc
Confidence 2 2223334445555555555321 1022389999999999999999999999999999999988888776543
Q ss_pred hccCCCCCCCCccccccccCCCCC-CCccccccccccCCcchhhHHHHHHHHHHHhhhcCcEEEEcCcccccchhhc---
Q 012744 153 EDGVINSNGTPIKEQMIQLAPNMP-AISTGELFWTGIGDLTMQKFFFDFMVKNMRATRAADFQLCNSTYELEGGAFS--- 228 (457)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~--- 228 (457)
.....+..++++.. ....+|+++ +++..+++ ..+... .....+.+......+++.+++||+.++|.....
T Consensus 158 ~~~~~~~~~~~~~~-~~v~iPgl~~pl~~~dlp-~~~~~~----~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~ 231 (481)
T PLN02554 158 DEKKYDVSELEDSE-VELDVPSLTRPYPVKCLP-SVLLSK----EWLPLFLAQARRFREMKGILVNTVAELEPQALKFFS 231 (481)
T ss_pred cccccCccccCCCC-ceeECCCCCCCCCHHHCC-CcccCH----HHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHH
Confidence 22111100111111 123578874 67777776 333221 233445555566788999999999999985443
Q ss_pred ----cCCceeeeCcccCCCCCCCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhcCCcEEEE
Q 012744 229 ----MIPELLPIGPLLASNRLGNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTVLEQNQFQELALGLEICNRSFLWV 304 (457)
Q Consensus 229 ----~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~ 304 (457)
..|+++.|||++........ . ..+.+.+|.+|+|++++++||||||||+..++.+++.+++.+++..+++|||+
T Consensus 232 ~~~~~~~~v~~vGpl~~~~~~~~~-~-~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~ 309 (481)
T PLN02554 232 GSSGDLPPVYPVGPVLHLENSGDD-S-KDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWS 309 (481)
T ss_pred hcccCCCCEEEeCCCccccccccc-c-ccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEE
Confidence 23689999999432211100 0 01244579999999988899999999998899999999999999999999999
Q ss_pred EcCCCCC----------CCcCCCchhHHHHhcCCceeecCCCchhhccCCCccceeeccCcchhhhhhhcCCceeccccc
Q 012744 305 VRPDITN----------DANDAYPEGFRERVAARGQMISWSPQQKVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPFF 374 (457)
Q Consensus 305 ~~~~~~~----------~~~~~~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~ 374 (457)
++..... .....+|++|.+++++|+++++|+||.+||+|+++++|||||||||+.|++++|||||++|++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~ 389 (481)
T PLN02554 310 LRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLY 389 (481)
T ss_pred EcCCcccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecCcc
Confidence 9753110 011236899999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhHHh-hhhhhceeEEeecc--------CCCccCHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhhhhcCCChHHH
Q 012744 375 ADQFMNTTY-ICDVWKVGLRLERN--------QSGIIGREEIKNKVDQVLG-DQNFKARALKLKEKALSSVREGGSSNKA 444 (457)
Q Consensus 375 ~DQ~~na~~-v~~~lG~g~~l~~~--------~~~~~~~~~l~~~i~~~l~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~ 444 (457)
+||+.||++ +++ +|+|+.+... +.+.+++++|+++|+++|+ |+.||+||+++++.+++++++|||+.++
T Consensus 390 ~DQ~~Na~~~v~~-~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~r~~a~~l~~~~~~av~~gGss~~~ 468 (481)
T PLN02554 390 AEQKFNAFEMVEE-LGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDSDVRKRVKEMSEKCHVALMDGGSSHTA 468 (481)
T ss_pred ccchhhHHHHHHH-hCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 999999955 555 7999998631 1246899999999999996 7899999999999999999999999999
Q ss_pred HHHHHHHHhcC
Q 012744 445 IQNFVQSIKQW 455 (457)
Q Consensus 445 ~~~~~~~~~~~ 455 (457)
+++||+++.++
T Consensus 469 l~~lv~~~~~~ 479 (481)
T PLN02554 469 LKKFIQDVTKN 479 (481)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 9
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.2e-64 Score=489.84 Aligned_cols=443 Identities=28% Similarity=0.470 Sum_probs=329.6
Q ss_pred CCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecC----CCCCCCC-Ccch
Q 012744 3 SPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIP----DGMEPWD-DRSD 77 (457)
Q Consensus 3 ~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~ 77 (457)
++||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+..... ..++++++.+| ++++++. ...+
T Consensus 9 ~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~----~~~~i~~~~lp~P~~~~lPdG~~~~~~ 84 (477)
T PLN02863 9 GTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLS----KHPSIETLVLPFPSHPSIPSGVENVKD 84 (477)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcc----cCCCeeEEeCCCCCcCCCCCCCcChhh
Confidence 7899999999999999999999999999999999999998877654311 11357776654 1333331 1111
Q ss_pred ----HHHHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEEEechhhHHHHHHhhhhhhhh
Q 012744 78 ----MRKLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAVVVITSAATVALTFSIPKLIE 153 (457)
Q Consensus 78 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~ 153 (457)
....+......+.+.+.++++.+ . .+++|||+|.+.+|+..+|+++|||++.+++++++.+..+.+++...+
T Consensus 85 ~~~~~~~~~~~a~~~~~~~~~~~l~~~---~-~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~ 160 (477)
T PLN02863 85 LPPSGFPLMIHALGELYAPLLSWFRSH---P-SPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMP 160 (477)
T ss_pred cchhhHHHHHHHHHHhHHHHHHHHHhC---C-CCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhccc
Confidence 12222233334445555555542 1 467999999999999999999999999999999999888877542211
Q ss_pred ccCCCCCCCCccccccccCCCCCCCccccccccccCCcchhhHHHHHHHHHHHhhhcCcEEEEcCcccccchhhccC---
Q 012744 154 DGVINSNGTPIKEQMIQLAPNMPAISTGELFWTGIGDLTMQKFFFDFMVKNMRATRAADFQLCNSTYELEGGAFSMI--- 230 (457)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~--- 230 (457)
....+ ........+..+|+++.+...+++ .++............+.+.......++.+++|||.+||....+..
T Consensus 161 ~~~~~--~~~~~~~~~~~iPg~~~~~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~ 237 (477)
T PLN02863 161 TKINP--DDQNEILSFSKIPNCPKYPWWQIS-SLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKE 237 (477)
T ss_pred ccccc--cccccccccCCCCCCCCcChHhCc-hhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhh
Confidence 10000 000000112257888888888887 333221111223334444444456778899999999998765432
Q ss_pred ---CceeeeCcccCCCCCCC---C-CCCCCCCcchhhHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhcCCcEEE
Q 012744 231 ---PELLPIGPLLASNRLGN---S-AGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTVLEQNQFQELALGLEICNRSFLW 303 (457)
Q Consensus 231 ---~~~~~vGpl~~~~~~~~---~-~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~ 303 (457)
++++.|||++....... . .......+++|.+|||.+++++||||||||+...+.+++.+++.+|+..+++|||
T Consensus 238 ~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw 317 (477)
T PLN02863 238 LGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIW 317 (477)
T ss_pred cCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEE
Confidence 57999999975432110 0 0011113567999999998899999999999889999999999999999999999
Q ss_pred EEcCCCCC-CCcCCCchhHHHHhcCCc-eeecCCCchhhccCCCccceeeccCcchhhhhhhcCCceeccccccchhhhH
Q 012744 304 VVRPDITN-DANDAYPEGFRERVAARG-QMISWSPQQKVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPFFADQFMNT 381 (457)
Q Consensus 304 ~~~~~~~~-~~~~~~~~~~~~~~~~nv-~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na 381 (457)
+++..... .....+|++|.+++.++. ++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||
T Consensus 318 ~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na 397 (477)
T PLN02863 318 CVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVNA 397 (477)
T ss_pred EECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchhhH
Confidence 99743111 112358889988876544 5569999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhceeEEeeccCCCccCHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCC
Q 012744 382 TYICDVWKVGLRLERNQSGIIGREEIKNKVDQVL-GDQNFKARALKLKEKALSSVREGGSSNKAIQNFVQSIKQWP 456 (457)
Q Consensus 382 ~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l-~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 456 (457)
+++++.||+|+++.......++.+++.++|+++| +++.||+||+++++.+++++.+||||.+++++|++.+.+++
T Consensus 398 ~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~~~ 473 (477)
T PLN02863 398 SLLVDELKVAVRVCEGADTVPDSDELARVFMESVSENQVERERAKELRRAALDAIKERGSSVKDLDGFVKHVVELG 473 (477)
T ss_pred HHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHhc
Confidence 9987658999999542223468999999999999 67899999999999999999999999999999999998764
No 10
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=1.6e-64 Score=490.87 Aligned_cols=439 Identities=27% Similarity=0.477 Sum_probs=336.9
Q ss_pred CCCCEEEEEcCCCCcChHHHHHHHHHHHhCC----CeEEEEeCCcchh----HHHhhhcCCCCCCCCeEEEecCCCCCCC
Q 012744 1 MSSPHVVVIPNPEQGHVIPLLELSQNLAKHG----LRITFVNSEYNHK----RVLESLEGKNYIGEQIHLVSIPDGMEPW 72 (457)
Q Consensus 1 m~~~~vl~~~~~~~GH~~p~~~la~~L~~~G----h~Vt~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (457)
|+|.||+++|++++||++|++.||+.|+.+| +.|||++++.+.. .+............+++++.+|++..+.
T Consensus 1 ~~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~ 80 (480)
T PLN00164 1 MAAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPT 80 (480)
T ss_pred CCCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCC
Confidence 8899999999999999999999999999997 7999999876532 3332211111112269999999764322
Q ss_pred CCcchHHHHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEEEechhhHHHHHHhhhhhhh
Q 012744 73 DDRSDMRKLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAVVVITSAATVALTFSIPKLI 152 (457)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~ 152 (457)
. ..+...++..+...+.+.++++++.+. .+++|||+|.+..|+..+|+++|||++.++++++..+..+.++|...
T Consensus 81 ~-~e~~~~~~~~~~~~~~~~l~~~L~~l~----~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~ 155 (480)
T PLN00164 81 D-AAGVEEFISRYIQLHAPHVRAAIAGLS----CPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALD 155 (480)
T ss_pred c-cccHHHHHHHHHHhhhHHHHHHHHhcC----CCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhc
Confidence 1 123334555555667777888877641 35799999999999999999999999999999998888887765432
Q ss_pred hccCCCCCCCCccccccccCCCCCCCccccccccccCCcchhhHHHHHHHHHHHhhhcCcEEEEcCcccccchhhccC--
Q 012744 153 EDGVINSNGTPIKEQMIQLAPNMPAISTGELFWTGIGDLTMQKFFFDFMVKNMRATRAADFQLCNSTYELEGGAFSMI-- 230 (457)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~-- 230 (457)
...-.+ ++.... ...+|+++.+...+++ ..+..... .....+....+...+++.+++||+.+||+......
T Consensus 156 ~~~~~~---~~~~~~-~~~iPGlp~l~~~dlp-~~~~~~~~--~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 228 (480)
T PLN00164 156 EEVAVE---FEEMEG-AVDVPGLPPVPASSLP-APVMDKKS--PNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIAD 228 (480)
T ss_pred ccccCc---ccccCc-ceecCCCCCCChHHCC-chhcCCCc--HHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHh
Confidence 110000 111011 2247888888888888 33322211 11233334445567899999999999998654322
Q ss_pred ---------CceeeeCcccCCCCCCCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhcCCcE
Q 012744 231 ---------PELLPIGPLLASNRLGNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTVLEQNQFQELALGLEICNRSF 301 (457)
Q Consensus 231 ---------~~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~ 301 (457)
++++.|||++...... .....+++|.+|||.+++++||||||||+..+..+++.+++.+|+..+++|
T Consensus 229 ~~~~~~~~~~~v~~vGPl~~~~~~~----~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~f 304 (480)
T PLN00164 229 GRCTPGRPAPTVYPIGPVISLAFTP----PAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRF 304 (480)
T ss_pred ccccccCCCCceEEeCCCccccccC----CCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCE
Confidence 5799999998532211 112456789999999988999999999998899999999999999999999
Q ss_pred EEEEcCCCCC--------CCcCCCchhHHHHhcCCceee-cCCCchhhccCCCccceeeccCcchhhhhhhcCCceeccc
Q 012744 302 LWVVRPDITN--------DANDAYPEGFRERVAARGQMI-SWSPQQKVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWP 372 (457)
Q Consensus 302 i~~~~~~~~~--------~~~~~~~~~~~~~~~~nv~~~-~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P 372 (457)
||++...... +....+|++|.+++.+++.++ +|+||.+||+|+++++|||||||||++||+++|||||++|
T Consensus 305 lWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P 384 (480)
T PLN00164 305 LWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWP 384 (480)
T ss_pred EEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCC
Confidence 9999853210 112248889999988888766 9999999999999999999999999999999999999999
Q ss_pred cccchhhhHHhhhhhhceeEEeeccC--CCccCHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHhhhhcCCChHHHH
Q 012744 373 FFADQFMNTTYICDVWKVGLRLERNQ--SGIIGREEIKNKVDQVLGDQ-----NFKARALKLKEKALSSVREGGSSNKAI 445 (457)
Q Consensus 373 ~~~DQ~~na~~v~~~lG~g~~l~~~~--~~~~~~~~l~~~i~~~l~~~-----~~~~~a~~l~~~~~~~~~~~g~~~~~~ 445 (457)
+++||+.||+++++.+|+|+.+..++ ++.+++++|+++|+++|.|+ .+|++|+++++++++++.+||||.+++
T Consensus 385 ~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~l 464 (480)
T PLN00164 385 LYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAAL 464 (480)
T ss_pred ccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 99999999998865589999996421 13479999999999999753 589999999999999999999999999
Q ss_pred HHHHHHHhcC
Q 012744 446 QNFVQSIKQW 455 (457)
Q Consensus 446 ~~~~~~~~~~ 455 (457)
++|++++.+.
T Consensus 465 ~~~v~~~~~~ 474 (480)
T PLN00164 465 QRLAREIRHG 474 (480)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 11
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=2.3e-64 Score=484.56 Aligned_cols=427 Identities=27% Similarity=0.495 Sum_probs=330.3
Q ss_pred CCEEEEEcCCCCcChHHHHHHHHHHH-hCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCC----CCCCCCCcch
Q 012744 3 SPHVVVIPNPEQGHVIPLLELSQNLA-KHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPD----GMEPWDDRSD 77 (457)
Q Consensus 3 ~~~vl~~~~~~~GH~~p~~~la~~L~-~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 77 (457)
|.||+++|++++||++|++.||+.|+ ++|++|||++++.+...+...... .+++++..+|. ++++... +
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~----~~~i~~~~lp~p~~~glp~~~~--~ 78 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLN----STGVDIVGLPSPDISGLVDPSA--H 78 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhcccc----CCCceEEECCCccccCCCCCCc--c
Confidence 78999999999999999999999998 799999999999886555332111 12688888884 4432211 2
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEEEechhhHHHHHHhhhhhhhhccCC
Q 012744 78 MRKLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAVVVITSAATVALTFSIPKLIEDGVI 157 (457)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~ 157 (457)
....+......+.+.++++++.+. .+|++||+|.+..|+..+|+++|||++.++++++..+..+.+.|.+......
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~----~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~ 154 (481)
T PLN02992 79 VVTKIGVIMREAVPTLRSKIAEMH----QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKE 154 (481)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcC----CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhcccccc
Confidence 222333344455667777776641 4789999999999999999999999999999999887766655532211000
Q ss_pred CCCCCCccccccccCCCCCCCccccccccccCCcchhhHHHHHHHHHHHhhhcCcEEEEcCcccccchhhccC-------
Q 012744 158 NSNGTPIKEQMIQLAPNMPAISTGELFWTGIGDLTMQKFFFDFMVKNMRATRAADFQLCNSTYELEGGAFSMI------- 230 (457)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~------- 230 (457)
+ ..... ....+|+++.+...+++ ..+.... ......+.+......+++.+++||+.+||....+..
T Consensus 155 ~---~~~~~-~~~~iPg~~~l~~~dlp-~~~~~~~--~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~ 227 (481)
T PLN02992 155 E---HTVQR-KPLAMPGCEPVRFEDTL-DAYLVPD--EPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLG 227 (481)
T ss_pred c---cccCC-CCcccCCCCccCHHHhh-HhhcCCC--cHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccc
Confidence 0 00001 12358888877777777 3222221 123444555555667899999999999999766532
Q ss_pred ----CceeeeCcccCCCCCCCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhcCCcEEEEEc
Q 012744 231 ----PELLPIGPLLASNRLGNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTVLEQNQFQELALGLEICNRSFLWVVR 306 (457)
Q Consensus 231 ----~~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~ 306 (457)
+.++.|||++...... ..+.+|.+|||.+++++||||||||+..++.+++++++.+|+..+++|||++.
T Consensus 228 ~~~~~~v~~VGPl~~~~~~~-------~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r 300 (481)
T PLN02992 228 RVARVPVYPIGPLCRPIQSS-------KTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVR 300 (481)
T ss_pred cccCCceEEecCccCCcCCC-------cchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 4699999997642211 24567999999988889999999999999999999999999999999999996
Q ss_pred CCCCC---------------C-CcCCCchhHHHHhcCCcee-ecCCCchhhccCCCccceeeccCcchhhhhhhcCCcee
Q 012744 307 PDITN---------------D-ANDAYPEGFRERVAARGQM-ISWSPQQKVLTHPSISCFMSHCGWNSTTEGVSNGVPFL 369 (457)
Q Consensus 307 ~~~~~---------------~-~~~~~~~~~~~~~~~nv~~-~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l 369 (457)
..... . ....+|++|.|++.++..+ .+|+||.+||+|+++++|||||||||+.|++++|||||
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l 380 (481)
T PLN02992 301 PPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMI 380 (481)
T ss_pred CCcccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEE
Confidence 32110 0 0234889999999877765 59999999999999999999999999999999999999
Q ss_pred ccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHhhhh--cCCChHHH
Q 012744 370 CWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGDQ---NFKARALKLKEKALSSVR--EGGSSNKA 444 (457)
Q Consensus 370 ~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~~---~~~~~a~~l~~~~~~~~~--~~g~~~~~ 444 (457)
++|++.||+.||+++++.+|+|+.+... ++.+++++|+++|+++|.++ .+|++++++++++++++. +||||.++
T Consensus 381 ~~P~~~DQ~~na~~~~~~~g~gv~~~~~-~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~ 459 (481)
T PLN02992 381 AWPLFAEQNMNAALLSDELGIAVRSDDP-KEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHES 459 (481)
T ss_pred ecCccchhHHHHHHHHHHhCeeEEecCC-CCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchHHH
Confidence 9999999999999996338999999741 13589999999999999763 799999999999999995 59999999
Q ss_pred HHHHHHHHhc
Q 012744 445 IQNFVQSIKQ 454 (457)
Q Consensus 445 ~~~~~~~~~~ 454 (457)
+++|++++.+
T Consensus 460 l~~~v~~~~~ 469 (481)
T PLN02992 460 LCRVTKECQR 469 (481)
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 12
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=2.9e-64 Score=481.66 Aligned_cols=431 Identities=24% Similarity=0.463 Sum_probs=324.3
Q ss_pred CCCCEEEEEcCCCCcChHHHHHHHHHHHhCC--CeEEE--EeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCC-C--
Q 012744 1 MSSPHVVVIPNPEQGHVIPLLELSQNLAKHG--LRITF--VNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPW-D-- 73 (457)
Q Consensus 1 m~~~~vl~~~~~~~GH~~p~~~la~~L~~~G--h~Vt~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-- 73 (457)
|.+.||+++|++++||++|++.||+.|+++| +.||+ ++++.+...+.+.........++++++.+|++.+.. .
T Consensus 1 ~~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~ 80 (451)
T PLN03004 1 MGEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSST 80 (451)
T ss_pred CCCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCccc
Confidence 8899999999999999999999999999998 55665 444443322221110111112369999999776422 1
Q ss_pred CcchHHHHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEEEechhhHHHHHHhhhhhhhh
Q 012744 74 DRSDMRKLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAVVVITSAATVALTFSIPKLIE 153 (457)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~ 153 (457)
...+....+......+...++++++.+.. . .+++|||+|.+..|+..+|+++|||++.+++++++.+..+.++|....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~-~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~ 158 (451)
T PLN03004 81 SRHHHESLLLEILCFSNPSVHRTLFSLSR-N-FNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDE 158 (451)
T ss_pred cccCHHHHHHHHHHhhhHHHHHHHHhcCC-C-CCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhccc
Confidence 11223334444445677778888887632 1 345999999999999999999999999999999998888877654221
Q ss_pred ccCCCCCCCCccccccccCCCCCCCccccccccccCCcchhhHHHHHHHHHHHhhhcCcEEEEcCcccccchhhcc----
Q 012744 154 DGVINSNGTPIKEQMIQLAPNMPAISTGELFWTGIGDLTMQKFFFDFMVKNMRATRAADFQLCNSTYELEGGAFSM---- 229 (457)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~---- 229 (457)
. .+..... ......+|+++.+...+++ .++.... ......+........+++.+++|||.+||....+.
T Consensus 159 ~--~~~~~~~--~~~~v~iPg~p~l~~~dlp-~~~~~~~--~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~ 231 (451)
T PLN03004 159 T--TPGKNLK--DIPTVHIPGVPPMKGSDMP-KAVLERD--DEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEE 231 (451)
T ss_pred c--ccccccc--cCCeecCCCCCCCChHHCc-hhhcCCc--hHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhc
Confidence 1 0000011 1122367888888888888 4433222 22334455555566788999999999999865442
Q ss_pred --CCceeeeCcccCCCCCCCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhcCCcEEEEEcC
Q 012744 230 --IPELLPIGPLLASNRLGNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTVLEQNQFQELALGLEICNRSFLWVVRP 307 (457)
Q Consensus 230 --~~~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~ 307 (457)
.++++.|||++....... .. ...+.+|.+|||.+++++||||||||+..++.+++++++.+|+..+++|||++..
T Consensus 232 ~~~~~v~~vGPl~~~~~~~~--~~-~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~ 308 (451)
T PLN03004 232 LCFRNIYPIGPLIVNGRIED--RN-DNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRN 308 (451)
T ss_pred CCCCCEEEEeeeccCccccc--cc-cchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcC
Confidence 257999999985322110 00 1234569999999988999999999999999999999999999999999999985
Q ss_pred CCCCC----CcC-CCchhHHHHhcCCc-eeecCCCchhhccCCCccceeeccCcchhhhhhhcCCceeccccccchhhhH
Q 012744 308 DITND----AND-AYPEGFRERVAARG-QMISWSPQQKVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPFFADQFMNT 381 (457)
Q Consensus 308 ~~~~~----~~~-~~~~~~~~~~~~nv-~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na 381 (457)
....+ ... .+|++|.+++.++. .+.+|+||.+||+|+++++||||||+||+.|++++|||+|++|++.||+.||
T Consensus 309 ~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na 388 (451)
T PLN03004 309 PPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNR 388 (451)
T ss_pred CccccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhH
Confidence 31100 112 38899999987644 5669999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhcCCChHH
Q 012744 382 TYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGDQNFKARALKLKEKALSSVREGGSSNK 443 (457)
Q Consensus 382 ~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~ 443 (457)
+++++.+|+|+.+...+.+.+++++|+++|+++|+|+.||++++++++..++++++||||.+
T Consensus 389 ~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 389 VMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGECPVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred HHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 99986579999997522235799999999999999999999999999999999999999864
No 13
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2e-63 Score=483.67 Aligned_cols=430 Identities=29% Similarity=0.494 Sum_probs=332.6
Q ss_pred CCEEEEEcCCCCcChHHHHHHHHHHHhC--CCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCC-CcchHH
Q 012744 3 SPHVVVIPNPEQGHVIPLLELSQNLAKH--GLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWD-DRSDMR 79 (457)
Q Consensus 3 ~~~vl~~~~~~~GH~~p~~~la~~L~~~--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 79 (457)
+.||+++|+|++||++|++.||++|++| ||+|||++++.+...+.... ...+++|+.+|++++... ...+..
T Consensus 10 ~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~-----~~~gi~fv~lp~~~p~~~~~~~~~~ 84 (459)
T PLN02448 10 SCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDP-----KPDNIRFATIPNVIPSELVRAADFP 84 (459)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccC-----CCCCEEEEECCCCCCCccccccCHH
Confidence 6799999999999999999999999999 99999999999887776532 123799999998665542 223444
Q ss_pred HHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEEEechhhHHHHHHhhhhhhhhccCCCC
Q 012744 80 KLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAVVVITSAATVALTFSIPKLIEDGVINS 159 (457)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~ 159 (457)
.++..+.+.+...++++++.+. .++||||+|.++.|+..+|+++|||++.++++++..+..+.+++.....+..+.
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~----~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~ 160 (459)
T PLN02448 85 GFLEAVMTKMEAPFEQLLDRLE----PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFPV 160 (459)
T ss_pred HHHHHHHHHhHHHHHHHHHhcC----CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCCC
Confidence 5555555566677777777642 368999999999999999999999999999999877776666554332221110
Q ss_pred CCCCc-cccccccCCCCCCCccccccccccCCcchhhHHHHHHHHHHHhhhcCcEEEEcCcccccchhhcc-----CCce
Q 012744 160 NGTPI-KEQMIQLAPNMPAISTGELFWTGIGDLTMQKFFFDFMVKNMRATRAADFQLCNSTYELEGGAFSM-----IPEL 233 (457)
Q Consensus 160 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~-----~~~~ 233 (457)
. .+. .......+|+++.+...+++ .++... .......+........+++.+++||+.+||+...+. .+++
T Consensus 161 ~-~~~~~~~~~~~iPg~~~l~~~dlp-~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~~ 236 (459)
T PLN02448 161 E-LSESGEERVDYIPGLSSTRLSDLP-PIFHGN--SRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKFPFPV 236 (459)
T ss_pred c-cccccCCccccCCCCCCCChHHCc-hhhcCC--chHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhcCCce
Confidence 0 000 11223357888777777777 333221 122233444445556778899999999999874432 3578
Q ss_pred eeeCcccCCCCCCC-CCCCCC-CCcchhhHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhcCCcEEEEEcCCCCC
Q 012744 234 LPIGPLLASNRLGN-SAGYFL-PEDSKCLEWLDQRQANSVIYVAFGSHTVLEQNQFQELALGLEICNRSFLWVVRPDITN 311 (457)
Q Consensus 234 ~~vGpl~~~~~~~~-~~~~~~-~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~ 311 (457)
+.|||+........ ...... +.+.++.+|++..+++++|||||||+.....+++++++++|+..+++|||++...
T Consensus 237 ~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~--- 313 (459)
T PLN02448 237 YPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGE--- 313 (459)
T ss_pred EEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCc---
Confidence 99999976422110 000001 1234799999998889999999999988889999999999999999999987633
Q ss_pred CCcCCCchhHHHHhcCCceeecCCCchhhccCCCccceeeccCcchhhhhhhcCCceeccccccchhhhHHhhhhhhcee
Q 012744 312 DANDAYPEGFRERVAARGQMISWSPQQKVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVG 391 (457)
Q Consensus 312 ~~~~~~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g 391 (457)
..++.++.++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+++++.||+|
T Consensus 314 ------~~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G 387 (459)
T PLN02448 314 ------ASRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIG 387 (459)
T ss_pred ------hhhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCce
Confidence 12455556678999999999999999999999999999999999999999999999999999999999867999
Q ss_pred EEeecc--CCCccCHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhc
Q 012744 392 LRLERN--QSGIIGREEIKNKVDQVLGDQ-----NFKARALKLKEKALSSVREGGSSNKAIQNFVQSIKQ 454 (457)
Q Consensus 392 ~~l~~~--~~~~~~~~~l~~~i~~~l~~~-----~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 454 (457)
+.+... +.+.+++++|+++|+++|.++ +||+||+++++++++++.+||||.+++++|++++++
T Consensus 388 ~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~ 457 (459)
T PLN02448 388 WRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQ 457 (459)
T ss_pred EEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 998632 123579999999999999763 799999999999999999999999999999999875
No 14
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=3.5e-63 Score=473.46 Aligned_cols=435 Identities=26% Similarity=0.470 Sum_probs=331.2
Q ss_pred CCCCEEEEEcCCCCcChHHHHHHHHHHHhC-CCeEEEEeCCcchhHHH-hhhcCCCCCCCCeEEEecCCCCCCCC-C-cc
Q 012744 1 MSSPHVVVIPNPEQGHVIPLLELSQNLAKH-GLRITFVNSEYNHKRVL-ESLEGKNYIGEQIHLVSIPDGMEPWD-D-RS 76 (457)
Q Consensus 1 m~~~~vl~~~~~~~GH~~p~~~la~~L~~~-Gh~Vt~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~ 76 (457)
|.+.||+++|+|++||++|++.||+.|+.+ |..|||++++.+..... ....+......++++..+|+.....- . ..
T Consensus 1 ~~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~~ 80 (470)
T PLN03015 1 MDQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPDA 80 (470)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCCc
Confidence 788999999999999999999999999977 99999999887654431 11111111112599999985332210 1 01
Q ss_pred hHHHHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCc-eEEEechhhHHHHHHhhhhhhhhcc
Q 012744 77 DMRKLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLR-RAVVVITSAATVALTFSIPKLIEDG 155 (457)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP-~v~~~~~~~~~~~~~~~~p~~~~~~ 155 (457)
+....+......+.+.++++++.+. .+++|||+|.+..|+..+|+++||| .+.+++++++....+.++|....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~l~----~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~-- 154 (470)
T PLN03015 81 TIFTKMVVKMRAMKPAVRDAVKSMK----RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDT-- 154 (470)
T ss_pred cHHHHHHHHHHhchHHHHHHHHhcC----CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhc--
Confidence 3333344455677788888888753 3679999999999999999999999 58888888877767666654321
Q ss_pred CCCCCCCCccccccccCCCCCCCccccccccccCCcchhhHHHHHHHHHHHhhhcCcEEEEcCcccccchhhccC-----
Q 012744 156 VINSNGTPIKEQMIQLAPNMPAISTGELFWTGIGDLTMQKFFFDFMVKNMRATRAADFQLCNSTYELEGGAFSMI----- 230 (457)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~----- 230 (457)
..... .....+. ..+|+++.+...+++ ..+..... ..+ ..+....+...+++.+++|||.+||+......
T Consensus 155 ~~~~~-~~~~~~~-~~vPg~p~l~~~dlp-~~~~~~~~-~~~-~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~ 229 (470)
T PLN03015 155 VVEGE-YVDIKEP-LKIPGCKPVGPKELM-ETMLDRSD-QQY-KECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDME 229 (470)
T ss_pred ccccc-cCCCCCe-eeCCCCCCCChHHCC-HhhcCCCc-HHH-HHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhcc
Confidence 11100 0010112 358999888888888 33322221 112 22334444578899999999999998655332
Q ss_pred ------CceeeeCcccCCCCCCCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhcCCcEEEE
Q 012744 231 ------PELLPIGPLLASNRLGNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTVLEQNQFQELALGLEICNRSFLWV 304 (457)
Q Consensus 231 ------~~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~ 304 (457)
++++.|||++..... ...+.++.+|||.+++++||||||||+..++.+++.+++.+|+..+++|||+
T Consensus 230 ~~~~~~~~v~~VGPl~~~~~~-------~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv 302 (470)
T PLN03015 230 LNRVMKVPVYPIGPIVRTNVH-------VEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWV 302 (470)
T ss_pred cccccCCceEEecCCCCCccc-------ccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEE
Confidence 569999999853211 1233479999999988999999999999999999999999999999999999
Q ss_pred EcCCCC--------CC-CcCCCchhHHHHhcCCceee-cCCCchhhccCCCccceeeccCcchhhhhhhcCCceeccccc
Q 012744 305 VRPDIT--------ND-ANDAYPEGFRERVAARGQMI-SWSPQQKVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPFF 374 (457)
Q Consensus 305 ~~~~~~--------~~-~~~~~~~~~~~~~~~nv~~~-~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~ 374 (457)
+..... .. ....+|++|.+++.+++.++ +|+||.+||+|+++++|||||||||++|++++|||||++|++
T Consensus 303 ~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~ 382 (470)
T PLN03015 303 LRRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLY 382 (470)
T ss_pred EecCccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccc
Confidence 963210 00 12358999999999888755 999999999999999999999999999999999999999999
Q ss_pred cchhhhHHhhhhhhceeEEeec-cCCCccCHHHHHHHHHHHhC---C--HHHHHHHHHHHHHHHhhhhcCCChHHHHHHH
Q 012744 375 ADQFMNTTYICDVWKVGLRLER-NQSGIIGREEIKNKVDQVLG---D--QNFKARALKLKEKALSSVREGGSSNKAIQNF 448 (457)
Q Consensus 375 ~DQ~~na~~v~~~lG~g~~l~~-~~~~~~~~~~l~~~i~~~l~---~--~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~ 448 (457)
.||+.||+++++.+|+|+.+.. ...+.+++++|+++|+++|+ + .++|+||++++++.++++++||||.+++++|
T Consensus 383 ~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~ 462 (470)
T PLN03015 383 AEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEW 462 (470)
T ss_pred cchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 9999999999666899999952 11246899999999999994 2 3799999999999999999999999999999
Q ss_pred HHHHh
Q 012744 449 VQSIK 453 (457)
Q Consensus 449 ~~~~~ 453 (457)
++++.
T Consensus 463 ~~~~~ 467 (470)
T PLN03015 463 AKRCY 467 (470)
T ss_pred HHhcc
Confidence 98863
No 15
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=3.3e-63 Score=483.01 Aligned_cols=445 Identities=24% Similarity=0.404 Sum_probs=327.3
Q ss_pred CCCCEEEEEcCCCCcChHHHHHHHHHHHhCCC---eEEEEeCCcchh-HHHhhhcCCCCCCCCeEEEecCCCCCCC--C-
Q 012744 1 MSSPHVVVIPNPEQGHVIPLLELSQNLAKHGL---RITFVNSEYNHK-RVLESLEGKNYIGEQIHLVSIPDGMEPW--D- 73 (457)
Q Consensus 1 m~~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh---~Vt~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~- 73 (457)
|++.||+++|++++||++|++.||+.|+.+|. .||+++++.+.. .............++++|+.+|++..+. +
T Consensus 1 ~~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~~ 80 (475)
T PLN02167 1 KKEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPMEL 80 (475)
T ss_pred CCccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCccccc
Confidence 78999999999999999999999999999984 566666543321 1111110111122369999998654221 1
Q ss_pred CcchHHHHHHHHHHhcchHHHHHHHHHhcC---CCC-CeeEEEecCCcchHHHHHHHcCCceEEEechhhHHHHHHhhhh
Q 012744 74 DRSDMRKLLEKRLQVMPGKLEGLIEEIHGR---EGE-KTACLIADGAAGWAIEVAEKMKLRRAVVVITSAATVALTFSIP 149 (457)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~-~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p 149 (457)
........+..+...+.+.++++++.+..+ .+. +++|||+|.+..|+..+|+++|||++.++++++..+..+.++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~ 160 (475)
T PLN02167 81 FVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLP 160 (475)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHH
Confidence 011222233344455566677777665321 002 4599999999999999999999999999999998888777665
Q ss_pred hhhhccCCCCCCCCc-cccccccCCCC-CCCccccccccccCCcchhhHHHHHHHHHHHhhhcCcEEEEcCcccccchhh
Q 012744 150 KLIEDGVINSNGTPI-KEQMIQLAPNM-PAISTGELFWTGIGDLTMQKFFFDFMVKNMRATRAADFQLCNSTYELEGGAF 227 (457)
Q Consensus 150 ~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~ 227 (457)
..... ... .++. ..+....+|++ +.+...+++ ..+.... ....+.+..+...+++.+++|||.+||+...
T Consensus 161 ~~~~~--~~~-~~~~~~~~~~~~iPgl~~~l~~~dlp-~~~~~~~----~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~ 232 (475)
T PLN02167 161 ERHRK--TAS-EFDLSSGEEELPIPGFVNSVPTKVLP-PGLFMKE----SYEAWVEIAERFPEAKGILVNSFTELEPNAF 232 (475)
T ss_pred Hhccc--ccc-ccccCCCCCeeECCCCCCCCChhhCc-hhhhCcc----hHHHHHHHHHhhcccCEeeeccHHHHHHHHH
Confidence 42211 000 0100 00112357887 356666776 3222211 1223334445567889999999999998755
Q ss_pred cc-------CCceeeeCcccCCCCCCCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhcCCc
Q 012744 228 SM-------IPELLPIGPLLASNRLGNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTVLEQNQFQELALGLEICNRS 300 (457)
Q Consensus 228 ~~-------~~~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~ 300 (457)
.. .|+++.|||++........ ......+.+|.+|||.+++++||||||||+..++.+++.+++.+|+..+++
T Consensus 233 ~~l~~~~~~~p~v~~vGpl~~~~~~~~~-~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~ 311 (475)
T PLN02167 233 DYFSRLPENYPPVYPVGPILSLKDRTSP-NLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCR 311 (475)
T ss_pred HHHHhhcccCCeeEEeccccccccccCC-CCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCc
Confidence 43 2689999999874321100 000112357999999998889999999999888999999999999999999
Q ss_pred EEEEEcCCCCC--CCcCCCchhHHHHhcCCceeecCCCchhhccCCCccceeeccCcchhhhhhhcCCceeccccccchh
Q 012744 301 FLWVVRPDITN--DANDAYPEGFRERVAARGQMISWSPQQKVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPFFADQF 378 (457)
Q Consensus 301 ~i~~~~~~~~~--~~~~~~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~ 378 (457)
|||+++..... .....+|++|.|++.+++++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+
T Consensus 312 flw~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~ 391 (475)
T PLN02167 312 FLWSIRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQQ 391 (475)
T ss_pred EEEEEecCcccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccccch
Confidence 99999753111 1123589999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhhhhhceeEEeecc---C-CCccCHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHh
Q 012744 379 MNTTYICDVWKVGLRLERN---Q-SGIIGREEIKNKVDQVLGDQ-NFKARALKLKEKALSSVREGGSSNKAIQNFVQSIK 453 (457)
Q Consensus 379 ~na~~v~~~lG~g~~l~~~---~-~~~~~~~~l~~~i~~~l~~~-~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 453 (457)
.||+++.+.+|+|+.+... + ...+++++|+++|+++|.++ .||+||+++++.+++++.+||||.+++++||+++.
T Consensus 392 ~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v~~i~ 471 (475)
T PLN02167 392 LNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGEDVPRKKVKEIAEAARKAVMDGGSSFVAVKRFIDDLL 471 (475)
T ss_pred hhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 9998754448999998642 1 13579999999999999765 89999999999999999999999999999999987
Q ss_pred c
Q 012744 454 Q 454 (457)
Q Consensus 454 ~ 454 (457)
.
T Consensus 472 ~ 472 (475)
T PLN02167 472 G 472 (475)
T ss_pred h
Confidence 5
No 16
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=6.4e-63 Score=474.30 Aligned_cols=433 Identities=27% Similarity=0.464 Sum_probs=324.1
Q ss_pred CCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecC----CCCCCCC-Ccch
Q 012744 3 SPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIP----DGMEPWD-DRSD 77 (457)
Q Consensus 3 ~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~ 77 (457)
+.||+++|++++||++|++.||+.|++||++|||++++.+...+..... ...++++++.+| +++++.. ...+
T Consensus 6 ~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~---~~~~~i~~~~lp~p~~dglp~~~~~~~~ 82 (472)
T PLN02670 6 VLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPS---QLSSSITLVSFPLPSVPGLPSSAESSTD 82 (472)
T ss_pred CcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccc---cCCCCeeEEECCCCccCCCCCCcccccc
Confidence 6799999999999999999999999999999999999988766553211 112358999988 6676542 2222
Q ss_pred H----HHHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEEEechhhHHHHHHhhhhhhhh
Q 012744 78 M----RKLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAVVVITSAATVALTFSIPKLIE 153 (457)
Q Consensus 78 ~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~ 153 (457)
. ...+....+.+.+.++++++. .+++|||+|.+..|+..+|+++|||++.++++++..+..+.+.+....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~ 156 (472)
T PLN02670 83 VPYTKQQLLKKAFDLLEPPLTTFLET------SKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLME 156 (472)
T ss_pred cchhhHHHHHHHHHHhHHHHHHHHHh------CCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhh
Confidence 2 123444455666777777766 578999999999999999999999999999999887777654332222
Q ss_pred ccCCCCCCCCccccccccCCCCC------CCccccccccccCCcchhhHHHHHHHHHHHhhhcCcEEEEcCcccccchhh
Q 012744 154 DGVINSNGTPIKEQMIQLAPNMP------AISTGELFWTGIGDLTMQKFFFDFMVKNMRATRAADFQLCNSTYELEGGAF 227 (457)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~ 227 (457)
.+..+ ...+....+|++. .+...+++ .++............+.+......+++.+++|||.+||....
T Consensus 157 ~~~~~-----~~~~~~~~~p~~~P~~~~~~~~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l 230 (472)
T PLN02670 157 GGDLR-----STAEDFTVVPPWVPFESNIVFRYHEVT-KYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWF 230 (472)
T ss_pred cccCC-----CccccccCCCCcCCCCccccccHHHhh-HHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHH
Confidence 22111 1111111233321 13344555 333211111111222334444557889999999999998766
Q ss_pred ccC-----CceeeeCcccCCC-CCCCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhcCCcE
Q 012744 228 SMI-----PELLPIGPLLASN-RLGNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTVLEQNQFQELALGLEICNRSF 301 (457)
Q Consensus 228 ~~~-----~~~~~vGpl~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~ 301 (457)
+.. ++++.|||++... ............+.++.+|||.+++++||||||||+..++.+++.+++.+|+..+++|
T Consensus 231 ~~l~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~F 310 (472)
T PLN02670 231 DLLSDLYRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPF 310 (472)
T ss_pred HHHHHhhCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCE
Confidence 542 5799999997531 1110000000112579999999988899999999999999999999999999999999
Q ss_pred EEEEcCCCCC--CCcCCCchhHHHHhcCCceee-cCCCchhhccCCCccceeeccCcchhhhhhhcCCceeccccccchh
Q 012744 302 LWVVRPDITN--DANDAYPEGFRERVAARGQMI-SWSPQQKVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPFFADQF 378 (457)
Q Consensus 302 i~~~~~~~~~--~~~~~~~~~~~~~~~~nv~~~-~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~ 378 (457)
||++...... .....+|++|.+++.+++.++ +|+||.+||+|+++++|||||||||++|++++|||||++|++.||+
T Consensus 311 lWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~ 390 (472)
T PLN02670 311 FWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQG 390 (472)
T ss_pred EEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccH
Confidence 9999753111 112358999999998888765 9999999999999999999999999999999999999999999999
Q ss_pred hhHHhhhhhhceeEEeeccC-CCccCHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhc
Q 012744 379 MNTTYICDVWKVGLRLERNQ-SGIIGREEIKNKVDQVLGDQ---NFKARALKLKEKALSSVREGGSSNKAIQNFVQSIKQ 454 (457)
Q Consensus 379 ~na~~v~~~lG~g~~l~~~~-~~~~~~~~l~~~i~~~l~~~---~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 454 (457)
.||+++++ +|+|+.+...+ .+.+++++|+++|+++|.|+ +||+||+++++.+++ .+...+++++|++.|.+
T Consensus 391 ~Na~~v~~-~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~----~~~~~~~~~~~~~~l~~ 465 (472)
T PLN02670 391 LNTRLLHG-KKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGD----MDRNNRYVDELVHYLRE 465 (472)
T ss_pred HHHHHHHH-cCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhC----cchhHHHHHHHHHHHHH
Confidence 99999988 79999997522 24589999999999999876 799999999999997 68888999999999987
Q ss_pred C
Q 012744 455 W 455 (457)
Q Consensus 455 ~ 455 (457)
+
T Consensus 466 ~ 466 (472)
T PLN02670 466 N 466 (472)
T ss_pred h
Confidence 5
No 17
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=1.6e-62 Score=479.64 Aligned_cols=436 Identities=29% Similarity=0.492 Sum_probs=316.3
Q ss_pred CCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCC---C-CCCCeEEEecC---CCCCCCCCc
Q 012744 3 SPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKN---Y-IGEQIHLVSIP---DGMEPWDDR 75 (457)
Q Consensus 3 ~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~---~~~~~~~~~ 75 (457)
+.||+++|+|++||++|++.||+.|++|||+|||++++.+...+...+.... + ....+.+..+| ++++++...
T Consensus 5 ~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e~ 84 (482)
T PLN03007 5 KLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCEN 84 (482)
T ss_pred CcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCccc
Confidence 5799999999999999999999999999999999999998876665432211 1 11134555555 355543111
Q ss_pred c---------hHHHHHHHHH---HhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEEEechhhHHHH
Q 012744 76 S---------DMRKLLEKRL---QVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAVVVITSAATVA 143 (457)
Q Consensus 76 ~---------~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~ 143 (457)
. ....++..+. ..+...++++++. .+||+||+|.+..|+..+|+++|||++.+++++++...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~------~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~ 158 (482)
T PLN03007 85 VDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLET------TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLC 158 (482)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHhc------CCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHH
Confidence 0 1222233332 2222333333332 67999999999999999999999999999998887665
Q ss_pred HHhhhhhhhhccCCCCCCCCccccccccCCCCCC---CccccccccccCCcchhhHHHHHHHHHHHhhhcCcEEEEcCcc
Q 012744 144 LTFSIPKLIEDGVINSNGTPIKEQMIQLAPNMPA---ISTGELFWTGIGDLTMQKFFFDFMVKNMRATRAADFQLCNSTY 220 (457)
Q Consensus 144 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~ 220 (457)
.+.......+... .+.... ...+|+++. +...+++ . ......+...+....+...+.+.+++||+.
T Consensus 159 ~~~~~~~~~~~~~-----~~~~~~-~~~~pg~p~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~ 227 (482)
T PLN03007 159 ASYCIRVHKPQKK-----VASSSE-PFVIPDLPGDIVITEEQIN-D----ADEESPMGKFMKEVRESEVKSFGVLVNSFY 227 (482)
T ss_pred HHHHHHhcccccc-----cCCCCc-eeeCCCCCCccccCHHhcC-C----CCCchhHHHHHHHHHhhcccCCEEEEECHH
Confidence 5543321111000 111011 113566652 2222333 1 111123444555555566888999999999
Q ss_pred cccchhhccC-----CceeeeCcccCCCCCC--CC--CCCCCCCcchhhHHhccCCCCeEEEEEeCCcccCCHHHHHHHH
Q 012744 221 ELEGGAFSMI-----PELLPIGPLLASNRLG--NS--AGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTVLEQNQFQELA 291 (457)
Q Consensus 221 ~le~~~~~~~-----~~~~~vGpl~~~~~~~--~~--~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~ 291 (457)
++|....+.. +.+++|||+....... .. ....+..+.+|.+|+|.++++++|||||||+.....+.+.+++
T Consensus 228 ~le~~~~~~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~ 307 (482)
T PLN03007 228 ELESAYADFYKSFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIA 307 (482)
T ss_pred HHHHHHHHHHHhccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHH
Confidence 9998755544 4699999986532210 00 0011123567999999998899999999999888899999999
Q ss_pred HHHhhcCCcEEEEEcCCCCC-CCcCCCchhHHHHhc-CCceeecCCCchhhccCCCccceeeccCcchhhhhhhcCCcee
Q 012744 292 LGLEICNRSFLWVVRPDITN-DANDAYPEGFRERVA-ARGQMISWSPQQKVLTHPSISCFMSHCGWNSTTEGVSNGVPFL 369 (457)
Q Consensus 292 ~a~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~-~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l 369 (457)
.+|+..+++|||+++..... .....+|++|.+++. .|+.+.+|+||.+||+|+++++|||||||||+.||+++|||||
T Consensus 308 ~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v 387 (482)
T PLN03007 308 AGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMV 387 (482)
T ss_pred HHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCee
Confidence 99999999999999853111 112358899998875 5666679999999999999999999999999999999999999
Q ss_pred ccccccchhhhHHhhhhhhceeEEeecc-----CCCccCHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHhhhhcCCCh
Q 012744 370 CWPFFADQFMNTTYICDVWKVGLRLERN-----QSGIIGREEIKNKVDQVLGDQ---NFKARALKLKEKALSSVREGGSS 441 (457)
Q Consensus 370 ~~P~~~DQ~~na~~v~~~lG~g~~l~~~-----~~~~~~~~~l~~~i~~~l~~~---~~~~~a~~l~~~~~~~~~~~g~~ 441 (457)
++|++.||+.||+++++.+++|+.+... +...+++++|+++|+++|.|+ .||+||+++++.+++++.+||||
T Consensus 388 ~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~gGsS 467 (482)
T PLN03007 388 TWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEGGSS 467 (482)
T ss_pred eccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCcH
Confidence 9999999999999987645666665321 124589999999999999887 89999999999999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 012744 442 NKAIQNFVQSIKQW 455 (457)
Q Consensus 442 ~~~~~~~~~~~~~~ 455 (457)
.+++++|++++.+.
T Consensus 468 ~~~l~~~v~~~~~~ 481 (482)
T PLN03007 468 FNDLNKFMEELNSR 481 (482)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998864
No 18
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1.1e-62 Score=471.81 Aligned_cols=414 Identities=26% Similarity=0.484 Sum_probs=307.8
Q ss_pred CC-CCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEec--C--CCCCCCCC-
Q 012744 1 MS-SPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSI--P--DGMEPWDD- 74 (457)
Q Consensus 1 m~-~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~- 74 (457)
|+ |+||+++|++++||++|++.||+.|+++||+|||++++.+...+.+.. ....++++..+ | ++++....
T Consensus 1 ~~~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~----a~~~~i~~~~l~~p~~dgLp~g~~~ 76 (442)
T PLN02208 1 MEPKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHN----LFPDSIVFHPLTIPPVNGLPAGAET 76 (442)
T ss_pred CCCCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhccc----CCCCceEEEEeCCCCccCCCCCccc
Confidence 66 569999999999999999999999999999999999988776665432 11124555554 3 45555422
Q ss_pred cchHHHH----HHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEEEechhhHHHHHHhhhhh
Q 012744 75 RSDMRKL----LEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAVVVITSAATVALTFSIPK 150 (457)
Q Consensus 75 ~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~ 150 (457)
..++... +......+.+.++++++. .++||||+| +..|+..+|+++|||++.++++++.... +.+++.
T Consensus 77 ~~~l~~~l~~~~~~~~~~~~~~l~~~L~~------~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~ 148 (442)
T PLN02208 77 TSDIPISMDNLLSEALDLTRDQVEAAVRA------LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG 148 (442)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhh------CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc
Confidence 2222222 222233344455555544 678999999 6789999999999999999999887543 433321
Q ss_pred hhhccCCCCCCCCccccccccCCCCCC----CccccccccccCCcchhhHHHHHHHHHHHhhhcCcEEEEcCcccccchh
Q 012744 151 LIEDGVINSNGTPIKEQMIQLAPNMPA----ISTGELFWTGIGDLTMQKFFFDFMVKNMRATRAADFQLCNSTYELEGGA 226 (457)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~ 226 (457)
...+ ..+|++|. +...+++ .+ . .....+.....+..+...+++.+++||+.+||...
T Consensus 149 ----~~~~-----------~~~pglp~~~~~~~~~~~~-~~--~-~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~ 209 (442)
T PLN02208 149 ----GKLG-----------VPPPGYPSSKVLFRENDAH-AL--A-TLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKF 209 (442)
T ss_pred ----cccC-----------CCCCCCCCcccccCHHHcC-cc--c-ccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHH
Confidence 0000 01355543 2334444 21 1 11111222222333455789999999999999865
Q ss_pred hc-----cCCceeeeCcccCCCCCCCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhcCCcE
Q 012744 227 FS-----MIPELLPIGPLLASNRLGNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTVLEQNQFQELALGLEICNRSF 301 (457)
Q Consensus 227 ~~-----~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~ 301 (457)
.+ +.|+++.|||++...... .+.+.++.+|||.+++++||||||||+..++.+++.+++.+++..+.++
T Consensus 210 ~~~~~~~~~~~v~~vGpl~~~~~~~------~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf 283 (442)
T PLN02208 210 CDYISRQYHKKVLLTGPMFPEPDTS------KPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPF 283 (442)
T ss_pred HHHHHhhcCCCEEEEeecccCcCCC------CCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcE
Confidence 54 247899999998654211 1346789999999988899999999999889999999999988888888
Q ss_pred EEEEcCCCCC-CCcCCCchhHHHHhcCCce-eecCCCchhhccCCCccceeeccCcchhhhhhhcCCceeccccccchhh
Q 012744 302 LWVVRPDITN-DANDAYPEGFRERVAARGQ-MISWSPQQKVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPFFADQFM 379 (457)
Q Consensus 302 i~~~~~~~~~-~~~~~~~~~~~~~~~~nv~-~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~ 379 (457)
+|+...+... .....+|++|.+++.++.. +.+|+||.+||+|+++++|||||||||++|++++|||+|++|++.||+.
T Consensus 284 ~wv~r~~~~~~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~ 363 (442)
T PLN02208 284 LIAVKPPRGSSTVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVL 363 (442)
T ss_pred EEEEeCCCcccchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHH
Confidence 8888743111 1224589999999875554 5599999999999999999999999999999999999999999999999
Q ss_pred hHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhc
Q 012744 380 NTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGDQ-----NFKARALKLKEKALSSVREGGSSNKAIQNFVQSIKQ 454 (457)
Q Consensus 380 na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~~-----~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 454 (457)
||+++++.+|+|+.+...+++.+++++|+++|+++|+++ .+|++++++++.+.+ +|||.+++++||+++.+
T Consensus 364 na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~~----~gsS~~~l~~~v~~l~~ 439 (442)
T PLN02208 364 FTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILVS----PGLLTGYVDKFVEELQE 439 (442)
T ss_pred HHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHH
Confidence 999887657999999752223489999999999999764 499999999999854 78999999999999876
Q ss_pred C
Q 012744 455 W 455 (457)
Q Consensus 455 ~ 455 (457)
+
T Consensus 440 ~ 440 (442)
T PLN02208 440 Y 440 (442)
T ss_pred h
Confidence 4
No 19
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=3e-62 Score=465.73 Aligned_cols=417 Identities=27% Similarity=0.462 Sum_probs=317.1
Q ss_pred CCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecC--CCCCCC-CCcc---
Q 012744 3 SPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIP--DGMEPW-DDRS--- 76 (457)
Q Consensus 3 ~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~--- 76 (457)
|+||+++|++++||++|++.||+.|+.+|+.|||++++.+...+... ...+....+.+..+| ++++++ +...
T Consensus 5 ~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~--~~~~~~~~v~~~~~p~~~glp~g~e~~~~~~ 82 (453)
T PLN02764 5 KFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL--NLFPHNIVFRSVTVPHVDGLPVGTETVSEIP 82 (453)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc--ccCCCCceEEEEECCCcCCCCCcccccccCC
Confidence 78999999999999999999999999999999999999876655431 101111237777777 677655 2211
Q ss_pred -hHHHHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEEEechhhHHHHHHhhhhhhhhcc
Q 012744 77 -DMRKLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAVVVITSAATVALTFSIPKLIEDG 155 (457)
Q Consensus 77 -~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~ 155 (457)
.....+....+.+.+.++++++. .++|+||+| +..|+..+|+++|||++.++++++..+..+.. + .+
T Consensus 83 ~~~~~~~~~a~~~~~~~~~~~l~~------~~~~~iV~D-~~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~----~~ 150 (453)
T PLN02764 83 VTSADLLMSAMDLTRDQVEVVVRA------VEPDLIFFD-FAHWIPEVARDFGLKTVKYVVVSASTIASMLV-P----GG 150 (453)
T ss_pred hhHHHHHHHHHHHhHHHHHHHHHh------CCCCEEEEC-CchhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-c----cc
Confidence 11122333334556677777766 578999999 47899999999999999999999987776642 1 11
Q ss_pred CCCCCCCCccccccccCCCCCC----CccccccccccC-Cc-chhhHHHHHHHHHHHhhhcCcEEEEcCcccccchhhcc
Q 012744 156 VINSNGTPIKEQMIQLAPNMPA----ISTGELFWTGIG-DL-TMQKFFFDFMVKNMRATRAADFQLCNSTYELEGGAFSM 229 (457)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~ 229 (457)
..+ ...|++|. +...+++. +.. .. .........+.+......+++.+++|||.+||....+.
T Consensus 151 ~~~-----------~~~pglp~~~v~l~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~ 218 (453)
T PLN02764 151 ELG-----------VPPPGYPSSKVLLRKQDAYT-MKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDY 218 (453)
T ss_pred cCC-----------CCCCCCCCCcccCcHhhCcc-hhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHH
Confidence 100 01255542 33444442 111 01 11112334444444556788999999999999876544
Q ss_pred C-----CceeeeCcccCCCCCCCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhcCCcEEEE
Q 012744 230 I-----PELLPIGPLLASNRLGNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTVLEQNQFQELALGLEICNRSFLWV 304 (457)
Q Consensus 230 ~-----~~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~ 304 (457)
. ++++.|||++...... -..+.++.+|||.+++++||||||||+..+..+++.+++.+|+..+.+|+|+
T Consensus 219 ~~~~~~~~v~~VGPL~~~~~~~------~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv 292 (453)
T PLN02764 219 IEKHCRKKVLLTGPVFPEPDKT------RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVA 292 (453)
T ss_pred HHhhcCCcEEEeccCccCcccc------ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEE
Confidence 3 5799999997543111 1235679999999999999999999998899999999999999999999999
Q ss_pred EcCCCCC-CCcCCCchhHHHHhcCCceee-cCCCchhhccCCCccceeeccCcchhhhhhhcCCceeccccccchhhhHH
Q 012744 305 VRPDITN-DANDAYPEGFRERVAARGQMI-SWSPQQKVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPFFADQFMNTT 382 (457)
Q Consensus 305 ~~~~~~~-~~~~~~~~~~~~~~~~nv~~~-~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~ 382 (457)
+...... .....+|++|.+++.+++.++ +|+||.+||+|+++++|||||||||++|++++|||||++|++.||+.||+
T Consensus 293 ~r~~~~~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~ 372 (453)
T PLN02764 293 VKPPRGSSTIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTR 372 (453)
T ss_pred EeCCCCCcchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHH
Confidence 9843111 113468999999998888766 99999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcC
Q 012744 383 YICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGDQ-----NFKARALKLKEKALSSVREGGSSNKAIQNFVQSIKQW 455 (457)
Q Consensus 383 ~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~~-----~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 455 (457)
++++.+|+|+.+...+.+.+++++|+++|+++|+++ .+|++++++++++++ +|||.+++++||+++.++
T Consensus 373 ~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~----~GSS~~~l~~lv~~~~~~ 446 (453)
T PLN02764 373 LLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLAS----PGLLTGYVDNFIESLQDL 446 (453)
T ss_pred HHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHh
Confidence 997657999998542113589999999999999764 399999999999975 899999999999999875
No 20
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=6e-62 Score=469.83 Aligned_cols=441 Identities=28% Similarity=0.512 Sum_probs=322.0
Q ss_pred CC-CCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecC-----CCCCCC-C
Q 012744 1 MS-SPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIP-----DGMEPW-D 73 (457)
Q Consensus 1 m~-~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~ 73 (457)
|. +.||+++|++++||++|++.||+.|+.+|+.|||++++.+...+.............++++.+| +++++. +
T Consensus 5 ~~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~ 84 (491)
T PLN02534 5 KAKQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCE 84 (491)
T ss_pred cCCCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCcc
Confidence 44 4699999999999999999999999999999999999998766654321111111248999987 577664 2
Q ss_pred Ccc-----hHHHHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEEEechhhHHHHHHhhh
Q 012744 74 DRS-----DMRKLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAVVVITSAATVALTFSI 148 (457)
Q Consensus 74 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 148 (457)
... .+...+......+.+.++++++.. . .++||||+|.+..|+..+|+++|||++.+++++++....+.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~---~-~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~ 160 (491)
T PLN02534 85 NLDTLPSRDLLRKFYDAVDKLQQPLERFLEQA---K-PPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNI 160 (491)
T ss_pred ccccCCcHHHHHHHHHHHHHhHHHHHHHHHhc---C-CCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHH
Confidence 211 122222223344556666666542 1 5689999999999999999999999999999988777654332
Q ss_pred hhhhhccCCCCCCCCccccccccCCCCCC---CccccccccccCCcchhhHHHHHHHHHHHhhhcCcEEEEcCcccccch
Q 012744 149 PKLIEDGVINSNGTPIKEQMIQLAPNMPA---ISTGELFWTGIGDLTMQKFFFDFMVKNMRATRAADFQLCNSTYELEGG 225 (457)
Q Consensus 149 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~ 225 (457)
....... + .+. ......+|+++. +...+++ ..+..... ...+.....+....++.+++|||.+||+.
T Consensus 161 ~~~~~~~--~---~~~-~~~~~~iPg~p~~~~l~~~dlp-~~~~~~~~---~~~~~~~~~~~~~~a~~vlvNTf~eLE~~ 230 (491)
T PLN02534 161 RLHNAHL--S---VSS-DSEPFVVPGMPQSIEITRAQLP-GAFVSLPD---LDDVRNKMREAESTAFGVVVNSFNELEHG 230 (491)
T ss_pred HHhcccc--c---CCC-CCceeecCCCCccccccHHHCC-hhhcCccc---HHHHHHHHHhhcccCCEEEEecHHHhhHH
Confidence 1111100 0 111 111234677763 5556665 22211111 11222122222245779999999999986
Q ss_pred hhcc-----CCceeeeCcccCCCCCCCC---CCCCCC-CcchhhHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhh
Q 012744 226 AFSM-----IPELLPIGPLLASNRLGNS---AGYFLP-EDSKCLEWLDQRQANSVIYVAFGSHTVLEQNQFQELALGLEI 296 (457)
Q Consensus 226 ~~~~-----~~~~~~vGpl~~~~~~~~~---~~~~~~-~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~ 296 (457)
..+. .++++.|||++........ ...... .+.+|.+|||.+++++||||+|||+.....+++.+++.+|+.
T Consensus 231 ~l~~l~~~~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~ 310 (491)
T PLN02534 231 CAEAYEKAIKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEA 310 (491)
T ss_pred HHHHHHhhcCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHh
Confidence 5442 3679999999753211000 000011 235699999999989999999999999999999999999999
Q ss_pred cCCcEEEEEcCCCCC-CC-cCCCchhHHHHhc-CCceeecCCCchhhccCCCccceeeccCcchhhhhhhcCCceecccc
Q 012744 297 CNRSFLWVVRPDITN-DA-NDAYPEGFRERVA-ARGQMISWSPQQKVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPF 373 (457)
Q Consensus 297 ~~~~~i~~~~~~~~~-~~-~~~~~~~~~~~~~-~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~ 373 (457)
.+++|||++..+... .. ...+|++|.+++. .++++.+|+||.+||+|+++++||||||+||++||+++|||||++|+
T Consensus 311 ~~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~ 390 (491)
T PLN02534 311 SKKPFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPL 390 (491)
T ss_pred CCCCEEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccc
Confidence 999999999843111 01 1136889998865 45556699999999999999999999999999999999999999999
Q ss_pred ccchhhhHHhhhhhhceeEEeecc-------CC--C-ccCHHHHHHHHHHHhC---C--HHHHHHHHHHHHHHHhhhhcC
Q 012744 374 FADQFMNTTYICDVWKVGLRLERN-------QS--G-IIGREEIKNKVDQVLG---D--QNFKARALKLKEKALSSVREG 438 (457)
Q Consensus 374 ~~DQ~~na~~v~~~lG~g~~l~~~-------~~--~-~~~~~~l~~~i~~~l~---~--~~~~~~a~~l~~~~~~~~~~~ 438 (457)
+.||+.||+++++.||+|+++..+ +. + .+++++|+++|+++|. + .++|+||++|++.+++++.+|
T Consensus 391 ~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~G 470 (491)
T PLN02534 391 FAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELG 470 (491)
T ss_pred cccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999998879999988521 00 1 3799999999999995 2 379999999999999999999
Q ss_pred CChHHHHHHHHHHHhcC
Q 012744 439 GSSNKAIQNFVQSIKQW 455 (457)
Q Consensus 439 g~~~~~~~~~~~~~~~~ 455 (457)
|||.+++++||+++.+.
T Consensus 471 GSS~~nl~~fv~~i~~~ 487 (491)
T PLN02534 471 GSSHINLSILIQDVLKQ 487 (491)
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 99999999999999754
No 21
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=9.3e-61 Score=458.97 Aligned_cols=414 Identities=28% Similarity=0.475 Sum_probs=306.8
Q ss_pred CC-CCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecC----CCCCCCC-C
Q 012744 1 MS-SPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIP----DGMEPWD-D 74 (457)
Q Consensus 1 m~-~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~ 74 (457)
|. +.||+++|++++||++|++.||+.|+++|++|||++++.+...+.... ...+++++..++ ++++... .
T Consensus 1 ~~~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~----~~~~~i~~~~i~lP~~dGLP~g~e~ 76 (446)
T PLN00414 1 MGSKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLN----LFPDSIVFEPLTLPPVDGLPFGAET 76 (446)
T ss_pred CCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccc----cCCCceEEEEecCCCcCCCCCcccc
Confidence 44 679999999999999999999999999999999999998876654432 111247775553 5666542 2
Q ss_pred cchHHH----HHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEEEechhhHHHHHHhhhhh
Q 012744 75 RSDMRK----LLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAVVVITSAATVALTFSIPK 150 (457)
Q Consensus 75 ~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~ 150 (457)
..++.. .+......+.+.++++++. .+||+||+|. ..|+..+|+++|||++.++++++.....+.+ +.
T Consensus 77 ~~~l~~~~~~~~~~a~~~l~~~l~~~L~~------~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~-~~ 148 (446)
T PLN00414 77 ASDLPNSTKKPIFDAMDLLRDQIEAKVRA------LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLA-PR 148 (446)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhc------CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhC-cH
Confidence 222211 1222223333444444433 6789999994 7899999999999999999999987777654 21
Q ss_pred hhhccCCCCCCCCccccccccCCCCCC----Cccccccc-cccCCcchhhHHHHHHHHHHHhhhcCcEEEEcCcccccch
Q 012744 151 LIEDGVINSNGTPIKEQMIQLAPNMPA----ISTGELFW-TGIGDLTMQKFFFDFMVKNMRATRAADFQLCNSTYELEGG 225 (457)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~ 225 (457)
.. .+ . .+|++|. +...+... .++. . ....+.+..+...+++.+++|||.+||..
T Consensus 149 --~~--~~---~--------~~pg~p~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~vlvNTf~eLE~~ 207 (446)
T PLN00414 149 --AE--LG---F--------PPPDYPLSKVALRGHDANVCSLFA-N-----SHELFGLITKGLKNCDVVSIRTCVELEGN 207 (446)
T ss_pred --hh--cC---C--------CCCCCCCCcCcCchhhcccchhhc-c-----cHHHHHHHHHhhccCCEEEEechHHHHHH
Confidence 00 00 0 1233332 11111110 1111 0 11333444455678999999999999987
Q ss_pred hhccC-----CceeeeCcccCCCCCCCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhcCCc
Q 012744 226 AFSMI-----PELLPIGPLLASNRLGNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTVLEQNQFQELALGLEICNRS 300 (457)
Q Consensus 226 ~~~~~-----~~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~ 300 (457)
..+.. ++++.|||+....... . . ...+.++.+|||.+++++||||||||......+++.+++.+|+..+.+
T Consensus 208 ~~~~~~~~~~~~v~~VGPl~~~~~~~-~-~--~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~ 283 (446)
T PLN00414 208 LCDFIERQCQRKVLLTGPMLPEPQNK-S-G--KPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLP 283 (446)
T ss_pred HHHHHHHhcCCCeEEEcccCCCcccc-c-C--cccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCC
Confidence 66532 4699999997543211 0 0 123456999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCC-CCcCCCchhHHHHhcCCceee-cCCCchhhccCCCccceeeccCcchhhhhhhcCCceeccccccchh
Q 012744 301 FLWVVRPDITN-DANDAYPEGFRERVAARGQMI-SWSPQQKVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPFFADQF 378 (457)
Q Consensus 301 ~i~~~~~~~~~-~~~~~~~~~~~~~~~~nv~~~-~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~ 378 (457)
|+|++...... .....+|++|.+++.+++.++ +|+||.+||+|+++++|||||||||++|++++|||||++|++.||+
T Consensus 284 Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~ 363 (446)
T PLN00414 284 FLIAVMPPKGSSTVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQV 363 (446)
T ss_pred eEEEEecCCCcccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchH
Confidence 99999753211 122468999999999999876 9999999999999999999999999999999999999999999999
Q ss_pred hhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHh
Q 012744 379 MNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGDQ-----NFKARALKLKEKALSSVREGGSSNKAIQNFVQSIK 453 (457)
Q Consensus 379 ~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~~-----~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 453 (457)
.||+++++.+|+|+.+..++.+.+++++|+++++++|+++ ++|++++++++.+.+ +||++ ..+++||++++
T Consensus 364 ~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~---~gg~s-s~l~~~v~~~~ 439 (446)
T PLN00414 364 LITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVS---PGLLS-GYADKFVEALE 439 (446)
T ss_pred HHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHc---CCCcH-HHHHHHHHHHH
Confidence 9999997558999999642113589999999999999764 499999999999754 46634 34899999987
Q ss_pred cC
Q 012744 454 QW 455 (457)
Q Consensus 454 ~~ 455 (457)
..
T Consensus 440 ~~ 441 (446)
T PLN00414 440 NE 441 (446)
T ss_pred Hh
Confidence 54
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=2.5e-53 Score=415.27 Aligned_cols=417 Identities=14% Similarity=0.175 Sum_probs=280.7
Q ss_pred CCEEEEE-cCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCC----CCc--
Q 012744 3 SPHVVVI-PNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPW----DDR-- 75 (457)
Q Consensus 3 ~~~vl~~-~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-- 75 (457)
..||+.+ |.++.||+.-+.+|+++|++|||+||++++..... .... ...+++.+.++...+.. ...
T Consensus 20 ~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~-~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (507)
T PHA03392 20 AARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVY-YASH------LCGNITEIDASLSVEYFKKLVKSSAV 92 (507)
T ss_pred cccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccc-cccC------CCCCEEEEEcCCChHHHHHHHhhhhH
Confidence 4567755 78899999999999999999999999997753211 0000 01366666654111100 000
Q ss_pred ----c---hH----HHHHHHHHHhcchHH--HHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHc-CCceEEEechhhHH
Q 012744 76 ----S---DM----RKLLEKRLQVMPGKL--EGLIEEIHGREGEKTACLIADGAAGWAIEVAEKM-KLRRAVVVITSAAT 141 (457)
Q Consensus 76 ----~---~~----~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~l-giP~v~~~~~~~~~ 141 (457)
. +. ......+...|...+ .++.+.|++. +.++|+||+|.+..|+..+|+.+ ++|.|.++++....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~-~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~ 171 (507)
T PHA03392 93 FRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANK-NNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLA 171 (507)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcC-CCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCch
Confidence 0 00 011111222332221 1223333311 17899999999888999999999 99999888865543
Q ss_pred HHHHhhhhhhhhccCCCCC--CCCccccccccCCCCCCCccccccccccCCcchhhHHHHHHHH----HHHhhhcCcEEE
Q 012744 142 VALTFSIPKLIEDGVINSN--GTPIKEQMIQLAPNMPAISTGELFWTGIGDLTMQKFFFDFMVK----NMRATRAADFQL 215 (457)
Q Consensus 142 ~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l 215 (457)
......-+...+..++|.+ ++.+.+...+++.++-......+.+..+. ...+....+.+.+ ..+...+.++++
T Consensus 172 ~~~~~~gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~-~~~~~l~~~~f~~~~~~~~~l~~~~~l~l 250 (507)
T PHA03392 172 ENFETMGAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLA-DEQNKLLKQQFGPDTPTIRELRNRVQLLF 250 (507)
T ss_pred hHHHhhccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHcCCCCCCHHHHHhCCcEEE
Confidence 2221110011111112211 12233333333333211000000001111 2222233333322 233447789999
Q ss_pred EcCcccccchhhccCCceeeeCcccCCCCCCCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCcc---cCCHHHHHHHHH
Q 012744 216 CNSTYELEGGAFSMIPELLPIGPLLASNRLGNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHT---VLEQNQFQELAL 292 (457)
Q Consensus 216 ~~s~~~le~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~---~~~~~~~~~~~~ 292 (457)
+|+++.++++ ++++|++++|||++.+.... .+.++++.+|++.++ +++|||||||+. .++.+.++.+++
T Consensus 251 vns~~~~d~~-rp~~p~v~~vGgi~~~~~~~------~~l~~~l~~fl~~~~-~g~V~vS~GS~~~~~~~~~~~~~~~l~ 322 (507)
T PHA03392 251 VNVHPVFDNN-RPVPPSVQYLGGLHLHKKPP------QPLDDYLEEFLNNST-NGVVYVSFGSSIDTNDMDNEFLQMLLR 322 (507)
T ss_pred EecCccccCC-CCCCCCeeeecccccCCCCC------CCCCHHHHHHHhcCC-CcEEEEECCCCCcCCCCCHHHHHHHHH
Confidence 9999999998 89999999999998854221 257888999999865 579999999984 357889999999
Q ss_pred HHhhcCCcEEEEEcCCCCCCCcCCCchhHHHHhcCCceeecCCCchhhccCCCccceeeccCcchhhhhhhcCCceeccc
Q 012744 293 GLEICNRSFLWVVRPDITNDANDAYPEGFRERVAARGQMISWSPQQKVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWP 372 (457)
Q Consensus 293 a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P 372 (457)
++++.+++|||++++. ..+ ...++|+++.+|+||.+||+|+++++||||||+||++||+++|||+|++|
T Consensus 323 a~~~l~~~viw~~~~~-------~~~----~~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP 391 (507)
T PHA03392 323 TFKKLPYNVLWKYDGE-------VEA----INLPANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLP 391 (507)
T ss_pred HHHhCCCeEEEEECCC-------cCc----ccCCCceEEecCCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEEECC
Confidence 9999999999999754 111 12368899999999999999999999999999999999999999999999
Q ss_pred cccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 012744 373 FFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGDQNFKARALKLKEKALSSVREGGSSNKAIQNFVQSI 452 (457)
Q Consensus 373 ~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 452 (457)
++.||+.||+|+++ +|+|+.+++ ..++.++|.++|+++++|++||+||+++++.+++. ..+..+....-++.+
T Consensus 392 ~~~DQ~~Na~rv~~-~G~G~~l~~---~~~t~~~l~~ai~~vl~~~~y~~~a~~ls~~~~~~---p~~~~~~av~~iE~v 464 (507)
T PHA03392 392 MMGDQFYNTNKYVE-LGIGRALDT---VTVSAAQLVLAIVDVIENPKYRKNLKELRHLIRHQ---PMTPLHKAIWYTEHV 464 (507)
T ss_pred CCccHHHHHHHHHH-cCcEEEecc---CCcCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHH
Confidence 99999999999999 599999985 67899999999999999999999999999999973 323334444444544
Q ss_pred hc
Q 012744 453 KQ 454 (457)
Q Consensus 453 ~~ 454 (457)
.+
T Consensus 465 ~r 466 (507)
T PHA03392 465 IR 466 (507)
T ss_pred Hh
Confidence 43
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=2.1e-53 Score=424.20 Aligned_cols=390 Identities=21% Similarity=0.322 Sum_probs=231.7
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCC---Ccch----
Q 012744 5 HVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWD---DRSD---- 77 (457)
Q Consensus 5 ~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---- 77 (457)
||+++|. ++||+.++..|+++|++|||+||++++.... .+... ...++++..++......+ ....
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNPS------KPSNIRFETYPDPYPEEEFEEIFPEFISK 73 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T------------S-CCEEEE-----TT------TTHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccc-ccccc------cccceeeEEEcCCcchHHHhhhhHHHHHH
Confidence 6788875 7799999999999999999999999875422 12100 013566666665443321 1110
Q ss_pred ----------HHHHHHHH-------HHhcchHH--HHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEEEechh
Q 012744 78 ----------MRKLLEKR-------LQVMPGKL--EGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAVVVITS 138 (457)
Q Consensus 78 ----------~~~~~~~~-------~~~~~~~~--~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~ 138 (457)
....+..+ ...|...+ .++++.++. .++|++|+|.+..|+..+|+.+++|.+.+.+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~---~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~ 150 (500)
T PF00201_consen 74 FFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS---EKFDLVISDAFDPCGLALAHYLGIPVIIISSST 150 (500)
T ss_dssp HHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH---HHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCC
T ss_pred HhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh---hccccceEeeccchhHHHHHHhcCCeEEEeccc
Confidence 11111111 01111100 122223333 689999999998899999999999998765433
Q ss_pred hHHHHHH-----hhhhhhhhccCCCCCCCCccccccccCCCCCCCccccccccccCCcchhhHHHHHH---HHHHHhhhc
Q 012744 139 AATVALT-----FSIPKLIEDGVINSNGTPIKEQMIQLAPNMPAISTGELFWTGIGDLTMQKFFFDFM---VKNMRATRA 210 (457)
Q Consensus 139 ~~~~~~~-----~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 210 (457)
....... ...|++.+.... ++++.+...+++.++.......+........ .+....+.+ ....+.+.+
T Consensus 151 ~~~~~~~~~~g~p~~psyvP~~~s---~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 226 (500)
T PF00201_consen 151 PMYDLSSFSGGVPSPPSYVPSMFS---DFSDRMSFWQRIKNFLFYLYFRFIFRYFFSP-QDKLYKKYFGFPFSFRELLSN 226 (500)
T ss_dssp SCSCCTCCTSCCCTSTTSTTCBCC---CSGTTSSSST--TTSHHHHHHHHHHHHGGGS--TTS-EEESS-GGGCHHHHHH
T ss_pred ccchhhhhccCCCCChHHhccccc---cCCCccchhhhhhhhhhhhhhccccccchhh-HHHHHhhhcccccccHHHHHH
Confidence 2110000 001111111110 1122222222222221000000000000000 000000000 011233456
Q ss_pred CcEEEEcCcccccchhhccCCceeeeCcccCCCCCCCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCccc-CCHHHHHH
Q 012744 211 ADFQLCNSTYELEGGAFSMIPELLPIGPLLASNRLGNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTV-LEQNQFQE 289 (457)
Q Consensus 211 ~~~~l~~s~~~le~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~ 289 (457)
.+++++|+.+.+++| ++.+|++++||+++.++.. +.+.++..|++...++++|||||||+.. ++.+.++.
T Consensus 227 ~~l~l~ns~~~ld~p-rp~~p~v~~vGgl~~~~~~--------~l~~~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~~~~ 297 (500)
T PF00201_consen 227 ASLVLINSHPSLDFP-RPLLPNVVEVGGLHIKPAK--------PLPEELWNFLDSSGKKGVVYVSFGSIVSSMPEEKLKE 297 (500)
T ss_dssp HHHCCSSTEEE-----HHHHCTSTTGCGC-S------------TCHHHHHHHTSTTTTTEEEEEE-TSSSTT-HHHHHHH
T ss_pred HHHHhhhccccCcCC-cchhhcccccCcccccccc--------ccccccchhhhccCCCCEEEEecCcccchhHHHHHHH
Confidence 778999999999998 8999999999999887553 4678899999986668899999999864 45555889
Q ss_pred HHHHHhhcCCcEEEEEcCCCCCCCcCCCchhHHHHhcCCceeecCCCchhhccCCCccceeeccCcchhhhhhhcCCcee
Q 012744 290 LALGLEICNRSFLWVVRPDITNDANDAYPEGFRERVAARGQMISWSPQQKVLTHPSISCFMSHCGWNSTTEGVSNGVPFL 369 (457)
Q Consensus 290 ~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l 369 (457)
+++++++.+++|||++.+. +... .++|+++.+|+||.+||.|+++++||||||+||+.||+++|||+|
T Consensus 298 ~~~~~~~~~~~~iW~~~~~---------~~~~---l~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l 365 (500)
T PF00201_consen 298 IAEAFENLPQRFIWKYEGE---------PPEN---LPKNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEALYHGVPML 365 (500)
T ss_dssp HHHHHHCSTTEEEEEETCS---------HGCH---HHTTEEEESS--HHHHHTSTTEEEEEES--HHHHHHHHHCT--EE
T ss_pred HHHHHhhCCCccccccccc---------cccc---ccceEEEeccccchhhhhcccceeeeeccccchhhhhhhccCCcc
Confidence 9999999999999999753 1122 368899999999999999999999999999999999999999999
Q ss_pred ccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 012744 370 CWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGDQNFKARALKLKEKALSS 434 (457)
Q Consensus 370 ~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~ 434 (457)
++|+++||+.||+++++ .|+|+.++. ..++.++|.++|+++|+|++|++||+++++.+++.
T Consensus 366 ~~P~~~DQ~~na~~~~~-~G~g~~l~~---~~~~~~~l~~ai~~vl~~~~y~~~a~~ls~~~~~~ 426 (500)
T PF00201_consen 366 GIPLFGDQPRNAARVEE-KGVGVVLDK---NDLTEEELRAAIREVLENPSYKENAKRLSSLFRDR 426 (500)
T ss_dssp E-GCSTTHHHHHHHHHH-TTSEEEEGG---GC-SHHHHHHHHHHHHHSHHHHHHHHHHHHTTT--
T ss_pred CCCCcccCCccceEEEE-EeeEEEEEe---cCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 99999999999999999 599999986 67999999999999999999999999999999863
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=4e-45 Score=353.30 Aligned_cols=378 Identities=19% Similarity=0.291 Sum_probs=264.1
Q ss_pred EcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCC-----cchHHHHHH
Q 012744 9 IPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDD-----RSDMRKLLE 83 (457)
Q Consensus 9 ~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 83 (457)
+.+|+.||++|+++||++|+++||+|+|++++.+.+.+... |+.+..++......+. ..+....++
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA---------GAEFVLYGSALPPPDNPPENTEEEPIDIIE 71 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc---------CCEEEecCCcCccccccccccCcchHHHHH
Confidence 36899999999999999999999999999999999999887 8888888765433211 023344444
Q ss_pred HHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEEEechhhHHHHHHhhhhhhhhccCCCCCCCC
Q 012744 84 KRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAVVVITSAATVALTFSIPKLIEDGVINSNGTP 163 (457)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 163 (457)
.+.......+..+++.+.. .+||+||+|.+.+++..+|+.+|||+|.+++.+.... .++.... + ..
T Consensus 72 ~~~~~~~~~~~~l~~~~~~---~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~----~~~~~~~----~---~~ 137 (392)
T TIGR01426 72 KLLDEAEDVLPQLEEAYKG---DRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANE----EFEEMVS----P---AG 137 (392)
T ss_pred HHHHHHHHHHHHHHHHhcC---CCCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccc----ccccccc----c---cc
Confidence 4444444445555555444 7899999999888999999999999999865432110 0000000 0 00
Q ss_pred ccccccccCCCCCCCccccccccccCC-cchhhHHHHHHH-H--HHHh--hhcCcEEEEcCcccccchhhccCCceeeeC
Q 012744 164 IKEQMIQLAPNMPAISTGELFWTGIGD-LTMQKFFFDFMV-K--NMRA--TRAADFQLCNSTYELEGGAFSMIPELLPIG 237 (457)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~--~~~~--~~~~~~~l~~s~~~le~~~~~~~~~~~~vG 237 (457)
+.. +............ ....+.+.+.+. + .... ....+..+..+.+.|+++...++++++++|
T Consensus 138 ---------~~~--~~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~G 206 (392)
T TIGR01426 138 ---------EGS--AEEGAIAERGLAEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPAGETFDDSFTFVG 206 (392)
T ss_pred ---------hhh--hhhhccccchhHHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCCccccCCCeEEEC
Confidence 000 0000000000000 000000111110 0 0011 123344677778888876556788999999
Q ss_pred cccCCCCCCCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhcCCcEEEEEcCCCCCCCcCCC
Q 012744 238 PLLASNRLGNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTVLEQNQFQELALGLEICNRSFLWVVRPDITNDANDAY 317 (457)
Q Consensus 238 pl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~ 317 (457)
|+...+... ..|.....++++||+++||+.......+..+++++.+.+.+++|..+....
T Consensus 207 p~~~~~~~~-------------~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~------- 266 (392)
T TIGR01426 207 PCIGDRKED-------------GSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVD------- 266 (392)
T ss_pred CCCCCcccc-------------CCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCC-------
Confidence 987653211 125665567889999999986666678889999999999999998865410
Q ss_pred chhHHHHhcCCceeecCCCchhhccCCCccceeeccCcchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeecc
Q 012744 318 PEGFRERVAARGQMISWSPQQKVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERN 397 (457)
Q Consensus 318 ~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~ 397 (457)
.+. ....++|+.+.+|+||.++|+++++ +|||||+||+.|++++|+|+|++|...||+.||+++++ +|+|..+..
T Consensus 267 ~~~-~~~~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~-~g~g~~l~~- 341 (392)
T TIGR01426 267 PAD-LGELPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAE-LGLGRHLPP- 341 (392)
T ss_pred hhH-hccCCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHH-CCCEEEecc-
Confidence 011 1124678999999999999999998 99999999999999999999999999999999999999 699999874
Q ss_pred CCCccCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 012744 398 QSGIIGREEIKNKVDQVLGDQNFKARALKLKEKALSSVREGGSSNKAIQNFVQSI 452 (457)
Q Consensus 398 ~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 452 (457)
..+++++|.++|+++++|++|+++++++++++++. ++..++. ++|..+
T Consensus 342 --~~~~~~~l~~ai~~~l~~~~~~~~~~~l~~~~~~~----~~~~~aa-~~i~~~ 389 (392)
T TIGR01426 342 --EEVTAEKLREAVLAVLSDPRYAERLRKMRAEIREA----GGARRAA-DEIEGF 389 (392)
T ss_pred --ccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHc----CCHHHHH-HHHHHh
Confidence 56899999999999999999999999999999973 4444444 444443
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=1.2e-44 Score=351.75 Aligned_cols=363 Identities=15% Similarity=0.138 Sum_probs=252.8
Q ss_pred CEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCC----------
Q 012744 4 PHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWD---------- 73 (457)
Q Consensus 4 ~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 73 (457)
|||+|+++|+.||++|+++||++|++|||+|+|++++.+...+... |++|..+++......
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~~~~~~~ 71 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAA---------GLEFVPVGGDPDELLASPERNAGLL 71 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHc---------CCceeeCCCCHHHHHhhhhhccccc
Confidence 6999999999999999999999999999999999999988888876 888888875432210
Q ss_pred --CcchHHHHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEEEechhhHHHHHHhhhhhh
Q 012744 74 --DRSDMRKLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAVVVITSAATVALTFSIPKL 151 (457)
Q Consensus 74 --~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~ 151 (457)
...........+.......++++++.++. .+||+||+|.+.+++..+|+++|||++.+++++..+.....
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~----- 143 (401)
T cd03784 72 LLGPGLLLGALRLLRREAEAMLDDLVAAARD---WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAFP----- 143 (401)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccCC-----
Confidence 01112223333444444555666665554 89999999998889999999999999999887653211000
Q ss_pred hhccCCCCCCCCccccccccCCCCCCCcc-ccccccccCCcchhhHHHHHHHHHHHhh--h-------cCcEEEEcCccc
Q 012744 152 IEDGVINSNGTPIKEQMIQLAPNMPAIST-GELFWTGIGDLTMQKFFFDFMVKNMRAT--R-------AADFQLCNSTYE 221 (457)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~l~~s~~~ 221 (457)
++... ....+...............+......+ . ..+..+....+.
T Consensus 144 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~ 199 (401)
T cd03784 144 ------------------------PPLGRANLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPA 199 (401)
T ss_pred ------------------------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcc
Confidence 00000 0000000000000000111111111111 1 122334444444
Q ss_pred ccchhhccCCceeeeC-cccCCCCCCCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCcccC-CHHHHHHHHHHHhhcCC
Q 012744 222 LEGGAFSMIPELLPIG-PLLASNRLGNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTVL-EQNQFQELALGLEICNR 299 (457)
Q Consensus 222 le~~~~~~~~~~~~vG-pl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~-~~~~~~~~~~a~~~~~~ 299 (457)
+..+..+++++..++| ++...+.. ...+.++..|++. ++++|||++||+... ....+..+++++...+.
T Consensus 200 ~~~~~~~~~~~~~~~g~~~~~~~~~-------~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~ 270 (401)
T cd03784 200 VLPPPPDWPRFDLVTGYGFRDVPYN-------GPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQ 270 (401)
T ss_pred cCCCCCCccccCcEeCCCCCCCCCC-------CCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCC
Confidence 4444356777888886 44333222 2345667788876 356999999998664 45677889999998899
Q ss_pred cEEEEEcCCCCCCCcCCCchhHHHHhcCCceeecCCCchhhccCCCccceeeccCcchhhhhhhcCCceeccccccchhh
Q 012744 300 SFLWVVRPDITNDANDAYPEGFRERVAARGQMISWSPQQKVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPFFADQFM 379 (457)
Q Consensus 300 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~ 379 (457)
++||+.+... .. . ...++|+++.+|+||.++|++|++ ||||||+||++|++++|||+|++|+..||+.
T Consensus 271 ~~i~~~g~~~----~~--~----~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~ 338 (401)
T cd03784 271 RAILSLGWGG----LG--A----EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQPF 338 (401)
T ss_pred eEEEEccCcc----cc--c----cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCcHH
Confidence 9999987541 11 1 123688999999999999999999 9999999999999999999999999999999
Q ss_pred hHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 012744 380 NTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGDQNFKARALKLKEKALS 433 (457)
Q Consensus 380 na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~ 433 (457)
||+++++ +|+|+.+.. ..++.++|.++|++++++ .++++++++++++++
T Consensus 339 ~a~~~~~-~G~g~~l~~---~~~~~~~l~~al~~~l~~-~~~~~~~~~~~~~~~ 387 (401)
T cd03784 339 WAARVAE-LGAGPALDP---RELTAERLAAALRRLLDP-PSRRRAAALLRRIRE 387 (401)
T ss_pred HHHHHHH-CCCCCCCCc---ccCCHHHHHHHHHHHhCH-HHHHHHHHHHHHHHh
Confidence 9999999 699999975 458999999999999985 566777778777765
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-42 Score=329.02 Aligned_cols=387 Identities=16% Similarity=0.191 Sum_probs=254.8
Q ss_pred CCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCC---CcchHH
Q 012744 3 SPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWD---DRSDMR 79 (457)
Q Consensus 3 ~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 79 (457)
+|||+|+..|+.||++|+++|+++|.++||+|+|+|++.+.+.+.+. |+.|..++....... ......
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a---------g~~f~~~~~~~~~~~~~~~~~~~~ 71 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA---------GLAFVAYPIRDSELATEDGKFAGV 71 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh---------CcceeeccccCChhhhhhhhhhcc
Confidence 58999999999999999999999999999999999999999999998 677777664311111 111111
Q ss_pred HHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEEEechhhHHHHHHhh-hhhhhhccCCC
Q 012744 80 KLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAVVVITSAATVALTFS-IPKLIEDGVIN 158 (457)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~-~p~~~~~~~~~ 158 (457)
+.+......+.....+.++.+.+ ..+|+++.|.....+ .+++..++|++............... .+.....+..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~e---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 146 (406)
T COG1819 72 KSFRRLLQQFKKLIRELLELLRE---LEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGLPLPPVGIAGKL- 146 (406)
T ss_pred chhHHHhhhhhhhhHHHHHHHHh---cchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccccCcccccccccc-
Confidence 11110223333344454444554 789999999665544 88999999999866554432111110 0000000000
Q ss_pred CCCCCccccccccCCCCCCCccccccccccCCcch--hhHHHHHHH------HHHHhh-hcCcEEEEcCcccccchhhcc
Q 012744 159 SNGTPIKEQMIQLAPNMPAISTGELFWTGIGDLTM--QKFFFDFMV------KNMRAT-RAADFQLCNSTYELEGGAFSM 229 (457)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------~~~~~~-~~~~~~l~~s~~~le~~~~~~ 229 (457)
..+..+ +......+ ....... ....+.... +..+.+ ......+......+.+. ...
T Consensus 147 ------------~~~~~~-~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 211 (406)
T COG1819 147 ------------PIPLYP-LPPRLVRP-LIFARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPG-DRL 211 (406)
T ss_pred ------------cccccc-cChhhccc-cccchhhhhhhhhhhhccccccccchHHHhcCCCCccccccccccCCC-CCC
Confidence 000000 00000000 0000000 000000000 011111 22222222222222211 334
Q ss_pred CCceeeeCcccCCCCCCCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhcCCcEEEEEcCCC
Q 012744 230 IPELLPIGPLLASNRLGNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTVLEQNQFQELALGLEICNRSFLWVVRPDI 309 (457)
Q Consensus 230 ~~~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~ 309 (457)
+....++||+....... +..| ...++++||+|+||.... .++++.+++++.+.+.++|+.+++.
T Consensus 212 p~~~~~~~~~~~~~~~~------------~~~~--~~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~~- 275 (406)
T COG1819 212 PFIGPYIGPLLGEAANE------------LPYW--IPADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGGA- 275 (406)
T ss_pred CCCcCcccccccccccc------------Ccch--hcCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEecccc-
Confidence 55666777777665432 1123 334577999999998766 8899999999999999999999752
Q ss_pred CCCCcCCCchhHHHHhcCCceeecCCCchhhccCCCccceeeccCcchhhhhhhcCCceeccccccchhhhHHhhhhhhc
Q 012744 310 TNDANDAYPEGFRERVAARGQMISWSPQQKVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWK 389 (457)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG 389 (457)
+. ... ..++|+++.+|+||.++|+++++ ||||||+||++|||++|||+|++|...||++||.|+++ +|
T Consensus 276 ~~-~~~--------~~p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~-~G 343 (406)
T COG1819 276 RD-TLV--------NVPDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEE-LG 343 (406)
T ss_pred cc-ccc--------cCCCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHH-cC
Confidence 00 111 23678999999999999999999 99999999999999999999999999999999999999 69
Q ss_pred eeEEeeccCCCccCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhc
Q 012744 390 VGLRLERNQSGIIGREEIKNKVDQVLGDQNFKARALKLKEKALSSVREGGSSNKAIQNFVQSIKQ 454 (457)
Q Consensus 390 ~g~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 454 (457)
+|..+.. +.++.+.|+++|+++|+|+.|+++++++++.+++. .| .+.+.+++++..+
T Consensus 344 ~G~~l~~---~~l~~~~l~~av~~vL~~~~~~~~~~~~~~~~~~~---~g--~~~~a~~le~~~~ 400 (406)
T COG1819 344 AGIALPF---EELTEERLRAAVNEVLADDSYRRAAERLAEEFKEE---DG--PAKAADLLEEFAR 400 (406)
T ss_pred CceecCc---ccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhc---cc--HHHHHHHHHHHHh
Confidence 9999985 67999999999999999999999999999999984 33 5566666666443
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=9.4e-43 Score=347.75 Aligned_cols=407 Identities=28% Similarity=0.422 Sum_probs=261.1
Q ss_pred CCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCC---CCCCCCeEEEecCCCCCCCCCcc--h
Q 012744 3 SPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGK---NYIGEQIHLVSIPDGMEPWDDRS--D 77 (457)
Q Consensus 3 ~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~ 77 (457)
+.+++++++|++||++|+..+|+.|+++||+||++++.............. ........+...+++++...... .
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPEGWEDDDLD 84 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhccchHHHHHH
Confidence 467889999999999999999999999999999999877654432210000 00000111111112233322111 1
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcC-CceEEEechhhHHHHHHhhhhhhhhccC
Q 012744 78 MRKLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMK-LRRAVVVITSAATVALTFSIPKLIEDGV 156 (457)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lg-iP~v~~~~~~~~~~~~~~~~p~~~~~~~ 156 (457)
.......+...+...+.+.+..+....+.++|++|+|.+..+...++...+ ++...+.+..........+.+.. .
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~----~ 160 (496)
T KOG1192|consen 85 ISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPLS----Y 160 (496)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCccc----c
Confidence 111133344444444444333333222144999999998777777777765 88888887777655554332211 1
Q ss_pred CCCCCCC---ccccccccCCCCCCCccccccccccC----CcchhhHHHHHHH-------HHHHhhhcCcEEEEcCcccc
Q 012744 157 INSNGTP---IKEQMIQLAPNMPAISTGELFWTGIG----DLTMQKFFFDFMV-------KNMRATRAADFQLCNSTYEL 222 (457)
Q Consensus 157 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~s~~~l 222 (457)
.+..... +.+....+.++ +....++ .... ............. .......+.+..++|+.+.+
T Consensus 161 ~p~~~~~~~~~~~~~~~~~~n---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~ 236 (496)
T KOG1192|consen 161 VPSPFSLSSGDDMSFPERVPN---LIKKDLP-SFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPLL 236 (496)
T ss_pred cCcccCccccccCcHHHHHHH---HHHHHHH-HHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCccc
Confidence 1110000 00101101110 0000011 0000 0000011111110 01123466779999999998
Q ss_pred cchhhccCCceeeeCcccCCCCCCCCCCCCCCCcchhhHHhccCCCC--eEEEEEeCCcc---cCCHHHHHHHHHHHhhc
Q 012744 223 EGGAFSMIPELLPIGPLLASNRLGNSAGYFLPEDSKCLEWLDQRQAN--SVIYVAFGSHT---VLEQNQFQELALGLEIC 297 (457)
Q Consensus 223 e~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~v~vs~Gs~~---~~~~~~~~~~~~a~~~~ 297 (457)
+...++..+++++|||++...... +. ....+|++..+.. ++|||||||+. .++.+....++.+++..
T Consensus 237 ~~~~~~~~~~v~~IG~l~~~~~~~------~~--~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~ 308 (496)
T KOG1192|consen 237 DFEPRPLLPKVIPIGPLHVKDSKQ------KS--PLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKALESL 308 (496)
T ss_pred CCCCCCCCCCceEECcEEecCccc------cc--cccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHHHhC
Confidence 885477789999999999984332 11 1234566654443 79999999997 79999999999999999
Q ss_pred -CCcEEEEEcCCCCCCCcCCCchhHHHHhcCCceeecCCCchhh-ccCCCccceeeccCcchhhhhhhcCCceecccccc
Q 012744 298 -NRSFLWVVRPDITNDANDAYPEGFRERVAARGQMISWSPQQKV-LTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPFFA 375 (457)
Q Consensus 298 -~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~~l-l~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~ 375 (457)
++.|+|++... ....+++++.++.++||...+|+||.++ |+|+++++||||||+|||+|++++|||+|++|+++
T Consensus 309 ~~~~FiW~~~~~----~~~~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~Plf~ 384 (496)
T KOG1192|consen 309 QGVTFLWKYRPD----DSIYFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVCVPLFG 384 (496)
T ss_pred CCceEEEEecCC----cchhhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCceecCCccc
Confidence 88899999864 1111233332222467888899999998 69999999999999999999999999999999999
Q ss_pred chhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 012744 376 DQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGDQNFKARALKLKEKALS 433 (457)
Q Consensus 376 DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~ 433 (457)
||+.||+++++. |.|..+.+ .+.+..++.+++..++++++|+++++++++.+++
T Consensus 385 DQ~~Na~~i~~~-g~~~v~~~---~~~~~~~~~~~~~~il~~~~y~~~~~~l~~~~~~ 438 (496)
T KOG1192|consen 385 DQPLNARLLVRH-GGGGVLDK---RDLVSEELLEAIKEILENEEYKEAAKRLSEILRD 438 (496)
T ss_pred cchhHHHHHHhC-CCEEEEeh---hhcCcHHHHHHHHHHHcChHHHHHHHHHHHHHHc
Confidence 999999999996 66666654 4466656999999999999999999999999875
No 28
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.95 E-value=6.6e-26 Score=213.34 Aligned_cols=305 Identities=18% Similarity=0.201 Sum_probs=197.0
Q ss_pred CEEEEEcCC-CCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCC-CCcchHHHH
Q 012744 4 PHVVVIPNP-EQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPW-DDRSDMRKL 81 (457)
Q Consensus 4 ~~vl~~~~~-~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 81 (457)
|||+|...+ |.||+.++++||++| |||+|+|++.....+.+.+. +.+..++.-.... ....+....
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 68 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKPR----------FPVREIPGLGPIQENGRLDRWKT 68 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhccc----------cCEEEccCceEeccCCccchHHH
Confidence 689998877 559999999999999 69999999988766555332 3344443221111 111111122
Q ss_pred HHHHH---HhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEEEechhhHHHHHHhhhhhhhhccCCC
Q 012744 82 LEKRL---QVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAVVVITSAATVALTFSIPKLIEDGVIN 158 (457)
Q Consensus 82 ~~~~~---~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~ 158 (457)
..... ......++++++.+.. .+||+||+| +.+.+..+|+..|+|++.+........
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~l~~---~~pDlVIsD-~~~~~~~aa~~~giP~i~i~~~~~~~~---------------- 128 (318)
T PF13528_consen 69 VRNNIRWLARLARRIRREIRWLRE---FRPDLVISD-FYPLAALAARRAGIPVIVISNQYWFLH---------------- 128 (318)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHh---cCCCEEEEc-ChHHHHHHHHhcCCCEEEEEehHHccc----------------
Confidence 22211 1223445555555555 899999999 556677889999999999877664310
Q ss_pred CCCCCccccccccCCCCCCCccccccccccCCcchhhHHHHHHHHHHH--hhhcCcEEEEcCcccccchhhccCCceeee
Q 012744 159 SNGTPIKEQMIQLAPNMPAISTGELFWTGIGDLTMQKFFFDFMVKNMR--ATRAADFQLCNSTYELEGGAFSMIPELLPI 236 (457)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~s~~~le~~~~~~~~~~~~v 236 (457)
+.. .+. ... .+...+.+... ....++..+.-++. . + .....++.++
T Consensus 129 --------------~~~------~~~----~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~-~--~-~~~~~~~~~~ 176 (318)
T PF13528_consen 129 --------------PNF------WLP----WDQ----DFGRLIERYIDRYHFPPADRRLALSFY-P--P-LPPFFRVPFV 176 (318)
T ss_pred --------------ccC------Ccc----hhh----hHHHHHHHhhhhccCCcccceecCCcc-c--c-cccccccccc
Confidence 000 000 000 01111111111 12344444444443 1 1 2223456678
Q ss_pred CcccCCCCCCCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhcC-CcEEEEEcCCCCCCCcC
Q 012744 237 GPLLASNRLGNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTVLEQNQFQELALGLEICN-RSFLWVVRPDITNDAND 315 (457)
Q Consensus 237 Gpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~-~~~i~~~~~~~~~~~~~ 315 (457)
||+..+.... . + ..+++.|+|++|..... .++++++..+ +.+++. +.. .
T Consensus 177 ~p~~~~~~~~------~----------~-~~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~------~ 226 (318)
T PF13528_consen 177 GPIIRPEIRE------L----------P-PEDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPN------A 226 (318)
T ss_pred Cchhcccccc------c----------C-CCCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCC------c
Confidence 9888764432 0 0 12345899999975432 5566676665 566655 433 1
Q ss_pred CCchhHHHHhcCCceeecCC--CchhhccCCCccceeeccCcchhhhhhhcCCceecccc--ccchhhhHHhhhhhhcee
Q 012744 316 AYPEGFRERVAARGQMISWS--PQQKVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPF--FADQFMNTTYICDVWKVG 391 (457)
Q Consensus 316 ~~~~~~~~~~~~nv~~~~~~--pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~--~~DQ~~na~~v~~~lG~g 391 (457)
.+ ...+|+.+.+|. ...++|..|++ +|+|||+||++|++++|+|+|++|. ..||..||+++++ +|+|
T Consensus 227 --~~----~~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~-~G~~ 297 (318)
T PF13528_consen 227 --AD----PRPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEE-LGLG 297 (318)
T ss_pred --cc----ccCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHH-CCCe
Confidence 00 126788888877 34589999999 9999999999999999999999999 7899999999999 6999
Q ss_pred EEeeccCCCccCHHHHHHHHHHH
Q 012744 392 LRLERNQSGIIGREEIKNKVDQV 414 (457)
Q Consensus 392 ~~l~~~~~~~~~~~~l~~~i~~~ 414 (457)
..+.. .+++++.|+++|+++
T Consensus 298 ~~~~~---~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 298 IVLSQ---EDLTPERLAEFLERL 317 (318)
T ss_pred EEccc---ccCCHHHHHHHHhcC
Confidence 99974 779999999999864
No 29
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.95 E-value=3e-25 Score=209.33 Aligned_cols=318 Identities=16% Similarity=0.159 Sum_probs=199.9
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhH--HHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHH
Q 012744 5 HVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKR--VLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLL 82 (457)
Q Consensus 5 ~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (457)
||+|.+.|+.||++|.+++|++|.++||+|+|++.....+. +.+. ++.+..++..--.. ...+ ..+
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~---------g~~~~~~~~~~l~~--~~~~-~~~ 70 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKE---------NIPYYSISSGKLRR--YFDL-KNI 70 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCccc---------CCcEEEEeccCcCC--CchH-HHH
Confidence 58888888889999999999999999999999997664332 1122 67777775321111 1111 112
Q ss_pred HHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcc--hHHHHHHHcCCceEEEechhhHHHHHHhhhhhhhhccCCCCC
Q 012744 83 EKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAG--WAIEVAEKMKLRRAVVVITSAATVALTFSIPKLIEDGVINSN 160 (457)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 160 (457)
........ .+...+..+++ .+||+||+...+. .+..+|..+++|++.......
T Consensus 71 ~~~~~~~~-~~~~~~~i~~~---~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~--------------------- 125 (352)
T PRK12446 71 KDPFLVMK-GVMDAYVRIRK---LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMT--------------------- 125 (352)
T ss_pred HHHHHHHH-HHHHHHHHHHh---cCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCC---------------------
Confidence 22222111 12222233333 8999999987555 467889999999988422110
Q ss_pred CCCccccccccCCCCCCCccccccccccCCcchhhHHHHHHHHHHHhhhcCcEEEEcCcccccchhhccC-CceeeeCcc
Q 012744 161 GTPIKEQMIQLAPNMPAISTGELFWTGIGDLTMQKFFFDFMVKNMRATRAADFQLCNSTYELEGGAFSMI-PELLPIGPL 239 (457)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~-~~~~~vGpl 239 (457)
++.. . +.+ .+.++.+++. +++ ....++ .++.++|+.
T Consensus 126 ------------~g~~-----------------n----r~~------~~~a~~v~~~-f~~---~~~~~~~~k~~~tG~P 162 (352)
T PRK12446 126 ------------PGLA-----------------N----KIA------LRFASKIFVT-FEE---AAKHLPKEKVIYTGSP 162 (352)
T ss_pred ------------ccHH-----------------H----HHH------HHhhCEEEEE-ccc---hhhhCCCCCeEEECCc
Confidence 0000 0 000 1223334332 222 101122 467899977
Q ss_pred cCCCCCCCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCcccCCH-HHHHHHHHHHhhcCCcEEEEEcCCCCCCCcCCCc
Q 012744 240 LASNRLGNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTVLEQ-NQFQELALGLEICNRSFLWVVRPDITNDANDAYP 318 (457)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~-~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~ 318 (457)
..+.... ...+...+.+.-.+++++|+|..||.+.... +.+..++..+.. +.+++|.++.. .+.
T Consensus 163 vr~~~~~-------~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~-------~~~ 227 (352)
T PRK12446 163 VREEVLK-------GNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKG-------NLD 227 (352)
T ss_pred CCccccc-------ccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCc-------hHH
Confidence 7654321 1111222223334457799999999875433 334444444432 47888888754 111
Q ss_pred hhHHHHhcCCceeecCC-C-chhhccCCCccceeeccCcchhhhhhhcCCceeccccc-----cchhhhHHhhhhhhcee
Q 012744 319 EGFRERVAARGQMISWS-P-QQKVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPFF-----ADQFMNTTYICDVWKVG 391 (457)
Q Consensus 319 ~~~~~~~~~nv~~~~~~-p-q~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~-----~DQ~~na~~v~~~lG~g 391 (457)
+ ..+. ..+..+..|+ + ..++|.++|+ +|||||.+|+.|++++|+|+|++|+. .||..||..+++ .|+|
T Consensus 228 ~-~~~~-~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~-~g~~ 302 (352)
T PRK12446 228 D-SLQN-KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFER-QGYA 302 (352)
T ss_pred H-HHhh-cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHH-CCCE
Confidence 1 1111 1345566887 4 3479999999 99999999999999999999999984 489999999999 5999
Q ss_pred EEeeccCCCccCHHHHHHHHHHHhCCH-HHHHHHH
Q 012744 392 LRLERNQSGIIGREEIKNKVDQVLGDQ-NFKARAL 425 (457)
Q Consensus 392 ~~l~~~~~~~~~~~~l~~~i~~~l~~~-~~~~~a~ 425 (457)
..+.. .+++++.|.++|.++++|+ .|+++++
T Consensus 303 ~~l~~---~~~~~~~l~~~l~~ll~~~~~~~~~~~ 334 (352)
T PRK12446 303 SVLYE---EDVTVNSLIKHVEELSHNNEKYKTALK 334 (352)
T ss_pred EEcch---hcCCHHHHHHHHHHHHcCHHHHHHHHH
Confidence 99973 6789999999999999886 4544443
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.92 E-value=1.4e-23 Score=196.81 Aligned_cols=309 Identities=13% Similarity=0.138 Sum_probs=175.4
Q ss_pred EEEEEcCCCC-cChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeE-EEecCCC-CCCCCCcchHHHH
Q 012744 5 HVVVIPNPEQ-GHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIH-LVSIPDG-MEPWDDRSDMRKL 81 (457)
Q Consensus 5 ~vl~~~~~~~-GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~ 81 (457)
||+|...|.. ||+.|.++||++|.+ ||+|+|+++......+... ++. +...|.. +.......+....
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~---------~~~~~~~~p~~~~~~~~~~~~~~~~ 70 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKY---------GFKVFETFPGIKLKGEDGKVNIVKT 70 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhh---------cCcceeccCCceEeecCCcCcHHHH
Confidence 5777666655 999999999999999 9999999987755444443 232 2222210 0000000112222
Q ss_pred HHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEEEechhhHHHHHHhhhhhhhhccCCCCCC
Q 012744 82 LEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAVVVITSAATVALTFSIPKLIEDGVINSNG 161 (457)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 161 (457)
+..........+.+..+.+++ .+||+||+| +.+.+..+|+.+|||++.+..+...
T Consensus 71 l~~~~~~~~~~~~~~~~~l~~---~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~--------------------- 125 (321)
T TIGR00661 71 LRNKEYSPKKAIRREINIIRE---YNPDLIISD-FEYSTVVAAKLLKIPVICISNQNYT--------------------- 125 (321)
T ss_pred HHhhccccHHHHHHHHHHHHh---cCCCEEEEC-CchHHHHHHHhcCCCEEEEecchhh---------------------
Confidence 211101101234444444454 899999999 6667788999999999987653210
Q ss_pred CCccccccccCCCCCCCccccccccccCCcchhhHHHHHHHHHHHhhhcCcEEEEcCcccccchhhccCCcee--eeCcc
Q 012744 162 TPIKEQMIQLAPNMPAISTGELFWTGIGDLTMQKFFFDFMVKNMRATRAADFQLCNSTYELEGGAFSMIPELL--PIGPL 239 (457)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~--~vGpl 239 (457)
..++ .. +.........+. ......+..++..++... ...|... .-+|.
T Consensus 126 ---------~~~~------------~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~----~~~p~~~~~~~~~~ 175 (321)
T TIGR00661 126 ---------RYPL------------KT--DLIVYPTMAALR---IFNERCERFIVPDYPFPY----TICPKIIKNMEGPL 175 (321)
T ss_pred ---------cCCc------------cc--chhHHHHHHHHH---HhccccceEeeecCCCCC----CCCccccccCCCcc
Confidence 0000 00 000000011111 111233333333332211 1111110 00111
Q ss_pred cCCCCCCCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhcCCcEEEEEcCCCCCCCcCCCch
Q 012744 240 LASNRLGNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTVLEQNQFQELALGLEICNRSFLWVVRPDITNDANDAYPE 319 (457)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~ 319 (457)
.. .++.++... +++.|++.+|+.. ...+++++.+.+. +.+++... ....+
T Consensus 176 ~~---------------~~~~~~~~~--~~~~iLv~~g~~~------~~~l~~~l~~~~~-~~~i~~~~------~~~~~ 225 (321)
T TIGR00661 176 IR---------------YDVDDVDNY--GEDYILVYIGFEY------RYKILELLGKIAN-VKFVCYSY------EVAKN 225 (321)
T ss_pred cc---------------hhhhccccC--CCCcEEEECCcCC------HHHHHHHHHhCCC-eEEEEeCC------CCCcc
Confidence 11 111122222 2346777778732 2345667766553 22232221 01111
Q ss_pred hHHHHhcCCceeecCCC--chhhccCCCccceeeccCcchhhhhhhcCCceeccccc--cchhhhHHhhhhhhceeEEee
Q 012744 320 GFRERVAARGQMISWSP--QQKVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPFF--ADQFMNTTYICDVWKVGLRLE 395 (457)
Q Consensus 320 ~~~~~~~~nv~~~~~~p--q~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~--~DQ~~na~~v~~~lG~g~~l~ 395 (457)
..++|+.+.+|.| ..++|+.|++ +|||||++|++|++++|+|++++|.. .||..||+.+++ .|+|+.+.
T Consensus 226 ----~~~~~v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~-~g~~~~l~ 298 (321)
T TIGR00661 226 ----SYNENVEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLED-LGCGIALE 298 (321)
T ss_pred ----ccCCCEEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHH-CCCEEEcC
Confidence 1357888889997 3578899999 99999999999999999999999985 499999999999 59999986
Q ss_pred ccCCCccCHHHHHHHHHHHhCCHHHH
Q 012744 396 RNQSGIIGREEIKNKVDQVLGDQNFK 421 (457)
Q Consensus 396 ~~~~~~~~~~~l~~~i~~~l~~~~~~ 421 (457)
. .++ ++.+++..+++|+.|.
T Consensus 299 ~---~~~---~~~~~~~~~~~~~~~~ 318 (321)
T TIGR00661 299 Y---KEL---RLLEAILDIRNMKRYK 318 (321)
T ss_pred h---hhH---HHHHHHHhcccccccc
Confidence 4 333 6777777777777653
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.89 E-value=2.4e-20 Score=173.69 Aligned_cols=340 Identities=15% Similarity=0.167 Sum_probs=207.1
Q ss_pred CEEEEEcCCCCcChHHHHHHHHHHHhCCC-eEEEEeCCcchhHH-HhhhcCCCCCCCCeEEEecCCCCCCCCCc-chHHH
Q 012744 4 PHVVVIPNPEQGHVIPLLELSQNLAKHGL-RITFVNSEYNHKRV-LESLEGKNYIGEQIHLVSIPDGMEPWDDR-SDMRK 80 (457)
Q Consensus 4 ~~vl~~~~~~~GH~~p~~~la~~L~~~Gh-~Vt~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 80 (457)
+++++...|+.||+.|.++|+++|.++|+ +|.++.+....+.. .+. .++.++.++.+....... ..+..
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~--------~~~~~~~I~~~~~~~~~~~~~~~~ 72 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQ--------YGIEFELIPSGGLRRKGSLKLLKA 72 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeeccc--------cCceEEEEecccccccCcHHHHHH
Confidence 46788888899999999999999999999 58888665543322 222 267888877544333221 12222
Q ss_pred HHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcc--hHHHHHHHcCCceEEEechhhHHHHHHhhhhhhhhccCCC
Q 012744 81 LLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAG--WAIEVAEKMKLRRAVVVITSAATVALTFSIPKLIEDGVIN 158 (457)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~ 158 (457)
.+..+... ...+.+++. .+||+|+.-..+. .+..+|..+|||.+..-.-.
T Consensus 73 ~~~~~~~~--~~a~~il~~------~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~-------------------- 124 (357)
T COG0707 73 PFKLLKGV--LQARKILKK------LKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNA-------------------- 124 (357)
T ss_pred HHHHHHHH--HHHHHHHHH------cCCCEEEecCCccccHHHHHHHhCCCCEEEEecCC--------------------
Confidence 22222111 234555566 8999999977665 66778888999999942211
Q ss_pred CCCCCccccccccCCCCCCCccccccccccCCcchhhHHHHHHHHHHHhhhcCcEEEEcCcccccchhhccCCceeeeCc
Q 012744 159 SNGTPIKEQMIQLAPNMPAISTGELFWTGIGDLTMQKFFFDFMVKNMRATRAADFQLCNSTYELEGGAFSMIPELLPIGP 238 (457)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~vGp 238 (457)
.++... . ++ ...++.+.+.... .+. ..-..++..+|-
T Consensus 125 -------------~~G~an--------k-------------~~------~~~a~~V~~~f~~-~~~--~~~~~~~~~tG~ 161 (357)
T COG0707 125 -------------VPGLAN--------K-------------IL------SKFAKKVASAFPK-LEA--GVKPENVVVTGI 161 (357)
T ss_pred -------------CcchhH--------H-------------Hh------HHhhceeeecccc-ccc--cCCCCceEEecC
Confidence 111110 0 00 0122333332221 110 111225777884
Q ss_pred ccCCCCCCCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCcccCCH-HHHHHHHHHHhhcCCcEEEEEcCCCCCCCcCCC
Q 012744 239 LLASNRLGNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTVLEQ-NQFQELALGLEICNRSFLWVVRPDITNDANDAY 317 (457)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~-~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~ 317 (457)
-....-... +..-.. .+...++++|+|.-||++...- +.+..++..+.+ +..++..++.. .
T Consensus 162 Pvr~~~~~~--------~~~~~~-~~~~~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~-------~- 223 (357)
T COG0707 162 PVRPEFEEL--------PAAEVR-KDGRLDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKN-------D- 223 (357)
T ss_pred cccHHhhcc--------chhhhh-hhccCCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcc-------h-
Confidence 333321100 000001 1112257799999999864322 223333333333 56777777654 1
Q ss_pred chhHHHHh-cCC-ceeecCCCch-hhccCCCccceeeccCcchhhhhhhcCCceeccccc----cchhhhHHhhhhhhce
Q 012744 318 PEGFRERV-AAR-GQMISWSPQQ-KVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPFF----ADQFMNTTYICDVWKV 390 (457)
Q Consensus 318 ~~~~~~~~-~~n-v~~~~~~pq~-~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~----~DQ~~na~~v~~~lG~ 390 (457)
.+...... ..+ +.+..|..+. ++|..+|+ +||++|.+|+.|++++|+|+|.+|+- .||..||..+++. |.
T Consensus 224 ~~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~-ga 300 (357)
T COG0707 224 LEELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKA-GA 300 (357)
T ss_pred HHHHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhC-CC
Confidence 12222222 233 6677888764 79999999 99999999999999999999999973 4899999999995 99
Q ss_pred eEEeeccCCCccCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHH
Q 012744 391 GLRLERNQSGIIGREEIKNKVDQVLGDQNFKARALKLKEKALSSVREGGSSNKAIQNFVQS 451 (457)
Q Consensus 391 g~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 451 (457)
|..+.. .++|.+++.+.|.+++.++ ++.+++++..++.. ..++.+.+.+++..
T Consensus 301 a~~i~~---~~lt~~~l~~~i~~l~~~~---~~l~~m~~~a~~~~--~p~aa~~i~~~~~~ 353 (357)
T COG0707 301 ALVIRQ---SELTPEKLAELILRLLSNP---EKLKAMAENAKKLG--KPDAAERIADLLLA 353 (357)
T ss_pred EEEecc---ccCCHHHHHHHHHHHhcCH---HHHHHHHHHHHhcC--CCCHHHHHHHHHHH
Confidence 999984 6799999999999999984 45555555555431 23333444444433
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.87 E-value=6.4e-20 Score=175.49 Aligned_cols=340 Identities=14% Similarity=0.150 Sum_probs=200.0
Q ss_pred CEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcch--hHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHH
Q 012744 4 PHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNH--KRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKL 81 (457)
Q Consensus 4 ~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (457)
|||+|...+..||...++.|+++|.++||+|++++.+... +.... .+++++.++..-.... .....
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~---------~g~~~~~~~~~~~~~~---~~~~~ 69 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPK---------AGIEFHFIPSGGLRRK---GSLAN 69 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhcccc---------CCCcEEEEeccCcCCC---ChHHH
Confidence 7899999999999999999999999999999999986532 11111 2666666653211111 11111
Q ss_pred HHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcc--hHHHHHHHcCCceEEEechhhHHHHHHhhhhhhhhccCCCC
Q 012744 82 LEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAG--WAIEVAEKMKLRRAVVVITSAATVALTFSIPKLIEDGVINS 159 (457)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~ 159 (457)
+...... ...+..+.+.+++ .+||+|++..... .+..+++..++|++......
T Consensus 70 l~~~~~~-~~~~~~~~~~ik~---~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~--------------------- 124 (357)
T PRK00726 70 LKAPFKL-LKGVLQARKILKR---FKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNA--------------------- 124 (357)
T ss_pred HHHHHHH-HHHHHHHHHHHHh---cCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCC---------------------
Confidence 1111111 1223333333333 8999999996332 44566777899998631100
Q ss_pred CCCCccccccccCCCCCCCccccccccccCCcchhhHHHHHHHHHHHhhhcCcEEEEcCcccccchhhccCCceeeeCcc
Q 012744 160 NGTPIKEQMIQLAPNMPAISTGELFWTGIGDLTMQKFFFDFMVKNMRATRAADFQLCNSTYELEGGAFSMIPELLPIGPL 239 (457)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~vGpl 239 (457)
.+ . ...+++ ...++.+++.+...+. .....++.++|..
T Consensus 125 ------------~~------------~---------~~~r~~------~~~~d~ii~~~~~~~~---~~~~~~i~vi~n~ 162 (357)
T PRK00726 125 ------------VP------------G---------LANKLL------ARFAKKVATAFPGAFP---EFFKPKAVVTGNP 162 (357)
T ss_pred ------------Cc------------c---------HHHHHH------HHHhchheECchhhhh---ccCCCCEEEECCC
Confidence 00 0 000110 1233444444432221 1223567888866
Q ss_pred cCCCCCCCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCcccCCHHHHHH-HHHHHhhcCC--cEEEEEcCCCCCCCcCC
Q 012744 240 LASNRLGNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTVLEQNQFQE-LALGLEICNR--SFLWVVRPDITNDANDA 316 (457)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~-~~~a~~~~~~--~~i~~~~~~~~~~~~~~ 316 (457)
....... + +..-.+ +....+.++|++..|+.. ...+.. +.+++.+... .+++.++.. .
T Consensus 163 v~~~~~~-------~-~~~~~~-~~~~~~~~~i~~~gg~~~---~~~~~~~l~~a~~~~~~~~~~~~~~G~g----~--- 223 (357)
T PRK00726 163 VREEILA-------L-AAPPAR-LAGREGKPTLLVVGGSQG---ARVLNEAVPEALALLPEALQVIHQTGKG----D--- 223 (357)
T ss_pred CChHhhc-------c-cchhhh-ccCCCCCeEEEEECCcHh---HHHHHHHHHHHHHHhhhCcEEEEEcCCC----c---
Confidence 5443211 0 000001 122233446666555532 222222 3355544332 344555543 1
Q ss_pred CchhHHHH--hcCCceeecCCC-chhhccCCCccceeeccCcchhhhhhhcCCceecccc----ccchhhhHHhhhhhhc
Q 012744 317 YPEGFRER--VAARGQMISWSP-QQKVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPF----FADQFMNTTYICDVWK 389 (457)
Q Consensus 317 ~~~~~~~~--~~~nv~~~~~~p-q~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~----~~DQ~~na~~v~~~lG 389 (457)
.+.+.+. ..-++.+.+|+. ..++++.+++ +|+|+|.++++|++++|+|+|++|. ..||..|+..+.+. |
T Consensus 224 -~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~-~ 299 (357)
T PRK00726 224 -LEEVRAAYAAGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDA-G 299 (357)
T ss_pred -HHHHHHHhhcCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHC-C
Confidence 1222222 222367778984 4689999999 9999999999999999999999997 46899999999994 9
Q ss_pred eeEEeeccCCCccCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 012744 390 VGLRLERNQSGIIGREEIKNKVDQVLGDQNFKARALKLKEKALSSVREGGSSNKAIQNFVQSI 452 (457)
Q Consensus 390 ~g~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 452 (457)
.|..+.. ++++.+.|+++|.++++|++++++..+-+.+..+ .++..+..+.+.+.+
T Consensus 300 ~g~~~~~---~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 355 (357)
T PRK00726 300 AALLIPQ---SDLTPEKLAEKLLELLSDPERLEAMAEAARALGK----PDAAERLADLIEELA 355 (357)
T ss_pred CEEEEEc---ccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcCC----cCHHHHHHHHHHHHh
Confidence 9999974 5578999999999999998877665555544432 455555555554443
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.83 E-value=1.8e-18 Score=165.22 Aligned_cols=319 Identities=13% Similarity=0.109 Sum_probs=189.4
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCC-CCCCCCcchHHHHHH
Q 012744 5 HVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDG-MEPWDDRSDMRKLLE 83 (457)
Q Consensus 5 ~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 83 (457)
||+|...++.||......|++.|.++||+|++++....... ... ...++++..++.. .........+...+.
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEA-RLV------PKAGIPLHTIPVGGLRRKGSLKKLKAPFK 73 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchh-hcc------cccCCceEEEEecCcCCCChHHHHHHHHH
Confidence 57888888889999999999999999999999987543211 100 0025666666532 111111111111111
Q ss_pred HHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcc--hHHHHHHHcCCceEEEechhhHHHHHHhhhhhhhhccCCCCCC
Q 012744 84 KRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAG--WAIEVAEKMKLRRAVVVITSAATVALTFSIPKLIEDGVINSNG 161 (457)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 161 (457)
. ... ...+.++++. .+||+|++..... .+..++...|+|++......
T Consensus 74 ~-~~~-~~~~~~~i~~------~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~----------------------- 122 (350)
T cd03785 74 L-LKG-VLQARKILKK------FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNA----------------------- 122 (350)
T ss_pred H-HHH-HHHHHHHHHh------cCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCC-----------------------
Confidence 1 111 1123344444 8999999875332 45677888899988621100
Q ss_pred CCccccccccCCCCCCCccccccccccCCcchhhHHHHHHHHHHHhhhcCcEEEEcCcccccchhhccCCceeeeCcccC
Q 012744 162 TPIKEQMIQLAPNMPAISTGELFWTGIGDLTMQKFFFDFMVKNMRATRAADFQLCNSTYELEGGAFSMIPELLPIGPLLA 241 (457)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~vGpl~~ 241 (457)
. + . ...++ ....++.+++.+....+. -.+.++..+|....
T Consensus 123 ----------~-----------~-~---------~~~~~------~~~~~~~vi~~s~~~~~~---~~~~~~~~i~n~v~ 162 (350)
T cd03785 123 ----------V-----------P-G---------LANRL------LARFADRVALSFPETAKY---FPKDKAVVTGNPVR 162 (350)
T ss_pred ----------C-----------c-c---------HHHHH------HHHhhCEEEEcchhhhhc---CCCCcEEEECCCCc
Confidence 0 0 0 00000 112356777766544332 11346777776544
Q ss_pred CCCCCCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCcccCC-HHHHHHHHHHHhhcCCcEEEEEcCCCCCCCcCCCchh
Q 012744 242 SNRLGNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTVLE-QNQFQELALGLEICNRSFLWVVRPDITNDANDAYPEG 320 (457)
Q Consensus 242 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~-~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~ 320 (457)
..... +.+. ...+...+++++|++..|+..... .+.+..++..+.+.+..+++.++.. ..+.
T Consensus 163 ~~~~~-------~~~~--~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g--------~~~~ 225 (350)
T cd03785 163 EEILA-------LDRE--RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKG--------DLEE 225 (350)
T ss_pred hHHhh-------hhhh--HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCc--------cHHH
Confidence 32111 0000 122333334556666666643211 1223333444443344555565532 1122
Q ss_pred HHHHh---cCCceeecCC-CchhhccCCCccceeeccCcchhhhhhhcCCceecccc----ccchhhhHHhhhhhhceeE
Q 012744 321 FRERV---AARGQMISWS-PQQKVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPF----FADQFMNTTYICDVWKVGL 392 (457)
Q Consensus 321 ~~~~~---~~nv~~~~~~-pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~----~~DQ~~na~~v~~~lG~g~ 392 (457)
+.+.. .+|+.+.+|+ ...++|+.+++ +|+++|.+|+.||+.+|+|+|++|. ..+|..|+..+.+ .|.|.
T Consensus 226 l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~-~g~g~ 302 (350)
T cd03785 226 VKKAYEELGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVK-AGAAV 302 (350)
T ss_pred HHHHHhccCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHh-CCCEE
Confidence 33222 3688888998 44579999999 9999999999999999999999986 4678999999998 49999
Q ss_pred EeeccCCCccCHHHHHHHHHHHhCCHHHHHHH
Q 012744 393 RLERNQSGIIGREEIKNKVDQVLGDQNFKARA 424 (457)
Q Consensus 393 ~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a 424 (457)
.+.. +..+.+++.++|+.+++|++.+++.
T Consensus 303 ~v~~---~~~~~~~l~~~i~~ll~~~~~~~~~ 331 (350)
T cd03785 303 LIPQ---EELTPERLAAALLELLSDPERLKAM 331 (350)
T ss_pred EEec---CCCCHHHHHHHHHHHhcCHHHHHHH
Confidence 9964 3468999999999999987655433
No 34
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.79 E-value=4.2e-17 Score=144.40 Aligned_cols=328 Identities=15% Similarity=0.156 Sum_probs=201.8
Q ss_pred CCEEEEEcCC--CCcChHHHHHHHHHHHhC--CCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCC------
Q 012744 3 SPHVVVIPNP--EQGHVIPLLELSQNLAKH--GLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPW------ 72 (457)
Q Consensus 3 ~~~vl~~~~~--~~GH~~p~~~la~~L~~~--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 72 (457)
.+||+|++.- +-||+-++..||++|.+. |.+|++++...-...+.- ..+++++.+|.-....
T Consensus 9 ~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~--------~~gVd~V~LPsl~k~~~G~~~~ 80 (400)
T COG4671 9 RPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPG--------PAGVDFVKLPSLIKGDNGEYGL 80 (400)
T ss_pred cceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCC--------cccCceEecCceEecCCCceee
Confidence 3499999976 449999999999999998 999999997654433322 1489999998422111
Q ss_pred -CCcchHHHHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEEEechhhHHHHHHhhhhhh
Q 012744 73 -DDRSDMRKLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAVVVITSAATVALTFSIPKL 151 (457)
Q Consensus 73 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~ 151 (457)
+...+ ...+.+.-...+...++. .+||++|+|.+..... -+ + .|. ..+..
T Consensus 81 ~d~~~~----l~e~~~~Rs~lil~t~~~------fkPDi~IVd~~P~Glr--~E-L-~pt-----------L~yl~---- 131 (400)
T COG4671 81 VDLDGD----LEETKKLRSQLILSTAET------FKPDIFIVDKFPFGLR--FE-L-LPT-----------LEYLK---- 131 (400)
T ss_pred eecCCC----HHHHHHHHHHHHHHHHHh------cCCCEEEEeccccchh--hh-h-hHH-----------HHHHh----
Confidence 11222 222222222334444444 8999999996554311 01 0 000 00000
Q ss_pred hhccCCCCCCCCccccccccCCCCCCCccccccccccCCcchhhHHHHHHHHHHHhhhcCcEEEEcCcccccchhhcc--
Q 012744 152 IEDGVINSNGTPIKEQMIQLAPNMPAISTGELFWTGIGDLTMQKFFFDFMVKNMRATRAADFQLCNSTYELEGGAFSM-- 229 (457)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~-- 229 (457)
+.... ..-++. ...+.+ ......-..+.....+. +..|.+++...|.|..+...+
T Consensus 132 --~~~t~------------~vL~lr--~i~D~p-~~~~~~w~~~~~~~~I~------r~yD~V~v~GdP~f~d~~~~~~~ 188 (400)
T COG4671 132 --TTGTR------------LVLGLR--SIRDIP-QELEADWRRAETVRLIN------RFYDLVLVYGDPDFYDPLTEFPF 188 (400)
T ss_pred --hcCCc------------ceeehH--hhhhch-hhhccchhhhHHHHHHH------HhheEEEEecCccccChhhcCCc
Confidence 00000 000000 001111 11100000011111111 345788888888876653332
Q ss_pred ----CCceeeeCcccCCCCCCCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhh-cCCc--EE
Q 012744 230 ----IPELLPIGPLLASNRLGNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTVLEQNQFQELALGLEI-CNRS--FL 302 (457)
Q Consensus 230 ----~~~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~-~~~~--~i 302 (457)
-..+.|+|.+ -.+ .... ..+. ... .++.-|+||-|. +....+++...++|-.. .+.+ .+
T Consensus 189 ~~~i~~k~~ytG~v-q~~-~~~~---~~p~-------~~~-pE~~~Ilvs~GG-G~dG~eLi~~~l~A~~~l~~l~~~~~ 254 (400)
T COG4671 189 APAIRAKMRYTGFV-QRS-LPHL---PLPP-------HEA-PEGFDILVSVGG-GADGAELIETALAAAQLLAGLNHKWL 254 (400)
T ss_pred cHhhhhheeEeEEe-ecc-CcCC---CCCC-------cCC-CccceEEEecCC-ChhhHHHHHHHHHHhhhCCCCCcceE
Confidence 2378999988 221 1100 0111 111 233478999887 55667777777777644 3333 66
Q ss_pred EEEcCCCCCCCcCCCchhHHHH----hc--CCceeecCCCch-hhccCCCccceeeccCcchhhhhhhcCCceeccccc-
Q 012744 303 WVVRPDITNDANDAYPEGFRER----VA--ARGQMISWSPQQ-KVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPFF- 374 (457)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~----~~--~nv~~~~~~pq~-~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~- 374 (457)
++++.. .|..-.++ .+ +++.+..|-.+. .++..++. +|+-||+|||+|-|.+|+|.+++|..
T Consensus 255 ivtGP~--------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~~ 324 (400)
T COG4671 255 IVTGPF--------MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRAA 324 (400)
T ss_pred EEeCCC--------CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEeccCC
Confidence 666654 66654443 34 788899998874 79988888 99999999999999999999999985
Q ss_pred --cchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCCH
Q 012744 375 --ADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGDQ 418 (457)
Q Consensus 375 --~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~~ 418 (457)
-||...|.|+++ ||+.-.+.. ..++++.++++|...++-|
T Consensus 325 p~eEQliRA~Rl~~-LGL~dvL~p---e~lt~~~La~al~~~l~~P 366 (400)
T COG4671 325 PREEQLIRAQRLEE-LGLVDVLLP---ENLTPQNLADALKAALARP 366 (400)
T ss_pred CcHHHHHHHHHHHh-cCcceeeCc---ccCChHHHHHHHHhcccCC
Confidence 499999999999 899999985 7799999999999999733
No 35
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.77 E-value=1.7e-16 Score=151.37 Aligned_cols=323 Identities=17% Similarity=0.174 Sum_probs=178.3
Q ss_pred CEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchh-HHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHH
Q 012744 4 PHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHK-RVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLL 82 (457)
Q Consensus 4 ~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (457)
||++|++.+..||+.....||++|.++||+|++++.+.... ..... .+++++.++-.-... ......+
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~~--------~g~~~~~i~~~~~~~---~~~~~~l 69 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVPK--------AGIEFYFIPVGGLRR---KGSFRLI 69 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhccccc--------CCCceEEEeccCcCC---CChHHHH
Confidence 48999999999999988899999999999999998644211 11010 256666665321111 1111222
Q ss_pred HHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcc--hHHHHHHHcCCceEEEechhhHHHHHHhhhhhhhhccCCCCC
Q 012744 83 EKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAG--WAIEVAEKMKLRRAVVVITSAATVALTFSIPKLIEDGVINSN 160 (457)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 160 (457)
...... ...+..+.+.+++ .+||+|++..... .+..++...++|.+.... ..
T Consensus 70 ~~~~~~-~~~~~~l~~~i~~---~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~-~~--------------------- 123 (348)
T TIGR01133 70 KTPLKL-LKAVFQARRILKK---FKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQ-NA--------------------- 123 (348)
T ss_pred HHHHHH-HHHHHHHHHHHHh---cCCCEEEEcCCcccHHHHHHHHHcCCCEEEECC-CC---------------------
Confidence 111111 1122233333333 8999999985433 345567888999874210 00
Q ss_pred CCCccccccccCCCCCCCccccccccccCCcchhhHHHHHHHHHHHhhhcCcEEEEcCcccccchhhccCCceeeeCccc
Q 012744 161 GTPIKEQMIQLAPNMPAISTGELFWTGIGDLTMQKFFFDFMVKNMRATRAADFQLCNSTYELEGGAFSMIPELLPIGPLL 240 (457)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~vGpl~ 240 (457)
.+ . ...++ ....++.+++.+...-+.. ...+||.-.
T Consensus 124 ----------------------~~-~---------~~~~~------~~~~~d~ii~~~~~~~~~~------~~~~i~n~v 159 (348)
T TIGR01133 124 ----------------------VP-G---------LTNKL------LSRFAKKVLISFPGAKDHF------EAVLVGNPV 159 (348)
T ss_pred ----------------------Cc-c---------HHHHH------HHHHhCeeEECchhHhhcC------CceEEcCCc
Confidence 00 0 00011 1134566666554332211 224555433
Q ss_pred CCCCCCCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCcccCC-HHHHHHHHHHHhhcCCcEEEEEcCCCCCCCcCCCch
Q 012744 241 ASNRLGNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTVLE-QNQFQELALGLEICNRSFLWVVRPDITNDANDAYPE 319 (457)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~-~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~ 319 (457)
...... .+.. .+.+...+++++|.+..|+..... .+.+...+..+...+..+++..++. .. +
T Consensus 160 ~~~~~~------~~~~---~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~~~~~~~~~~g~~-------~~-~ 222 (348)
T TIGR01133 160 RQEIRS------LPVP---RERFGLREGKPTILVLGGSQGAKILNELVPKALAKLAEKGIQIVHQTGKN-------DL-E 222 (348)
T ss_pred CHHHhc------ccch---hhhcCCCCCCeEEEEECCchhHHHHHHHHHHHHHHHhhcCcEEEEECCcc-------hH-H
Confidence 221110 0000 012222233445555445543211 1112222333333345665544432 11 2
Q ss_pred hHHHHhcC-Cc-eeecCC--CchhhccCCCccceeeccCcchhhhhhhcCCceeccccc---cchhhhHHhhhhhhceeE
Q 012744 320 GFRERVAA-RG-QMISWS--PQQKVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPFF---ADQFMNTTYICDVWKVGL 392 (457)
Q Consensus 320 ~~~~~~~~-nv-~~~~~~--pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~---~DQ~~na~~v~~~lG~g~ 392 (457)
.+.+.... +. ..+.|. ...++|+.+|+ +|+++|.+|+.|++++|+|+|+.|.. .+|..|+..+.+ .|.|.
T Consensus 223 ~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~-~~~G~ 299 (348)
T TIGR01133 223 KVKNVYQELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLED-LGAGL 299 (348)
T ss_pred HHHHHHhhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHH-CCCEE
Confidence 22222221 11 233344 34579999999 99999988999999999999998863 468889999988 49999
Q ss_pred EeeccCCCccCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 012744 393 RLERNQSGIIGREEIKNKVDQVLGDQNFKARALKLKEKALS 433 (457)
Q Consensus 393 ~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~ 433 (457)
.+.. ++.+.++|.++|.++++|++.++ ++++..++
T Consensus 300 ~~~~---~~~~~~~l~~~i~~ll~~~~~~~---~~~~~~~~ 334 (348)
T TIGR01133 300 VIRQ---KELLPEKLLEALLKLLLDPANLE---AMAEAARK 334 (348)
T ss_pred EEec---ccCCHHHHHHHHHHHHcCHHHHH---HHHHHHHh
Confidence 8863 45689999999999999986554 34444443
No 36
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.76 E-value=1.3e-16 Score=152.89 Aligned_cols=351 Identities=12% Similarity=0.051 Sum_probs=198.1
Q ss_pred CEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHHH
Q 012744 4 PHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLLE 83 (457)
Q Consensus 4 ~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (457)
.||+|...++.||++|. +|+++|.++|++|.|++.... ..++.+.. .++.+..++- . .+.+.+.
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g~~-----~~~~~~~l~v----~----G~~~~l~ 69 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEGCE-----VLYSMEELSV----M----GLREVLG 69 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCcCc-----cccChHHhhh----c----cHHHHHH
Confidence 58899999999999999 999999999999999986532 34433210 0233333321 0 1111122
Q ss_pred HHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcc-h--HHHHHHHcCCceEEEechhhHHHHHHhhhhhhhhccCCCCC
Q 012744 84 KRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAG-W--AIEVAEKMKLRRAVVVITSAATVALTFSIPKLIEDGVINSN 160 (457)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~-~--~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 160 (457)
.+. .....+.++.+.+++ .+||+||.-.... . ....|+.+|||++.+. +|-.
T Consensus 70 ~~~-~~~~~~~~~~~~l~~---~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i-~P~~-------------------- 124 (385)
T TIGR00215 70 RLG-RLLKIRKEVVQLAKQ---AKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYI-SPQV-------------------- 124 (385)
T ss_pred HHH-HHHHHHHHHHHHHHh---cCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEe-CCcH--------------------
Confidence 111 111223344444444 8999988754422 2 2337889999999753 1110
Q ss_pred CCCccccccccCCCCCCCccccccccccCCcchhhHHHHHHHHHHHhhhcCcEEEEcCcccccchhhccCCceeeeCccc
Q 012744 161 GTPIKEQMIQLAPNMPAISTGELFWTGIGDLTMQKFFFDFMVKNMRATRAADFQLCNSTYELEGGAFSMIPELLPIGPLL 240 (457)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~vGpl~ 240 (457)
+ .+-.. ....+ .+.+|.+++.+..+.+.. ....-+..+||.-.
T Consensus 125 -----------------w-------aw~~~--~~r~l----------~~~~d~v~~~~~~e~~~~-~~~g~~~~~vGnPv 167 (385)
T TIGR00215 125 -----------------W-------AWRKW--RAKKI----------EKATDFLLAILPFEKAFY-QKKNVPCRFVGHPL 167 (385)
T ss_pred -----------------h-------hcCcc--hHHHH----------HHHHhHhhccCCCcHHHH-HhcCCCEEEECCch
Confidence 0 00000 01111 123455555554443322 22223566788444
Q ss_pred CCCCCCCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhc-----CCcEEEEEcCCCCCCCcC
Q 012744 241 ASNRLGNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTVLEQNQFQELALGLEIC-----NRSFLWVVRPDITNDAND 315 (457)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~ 315 (457)
.+.... ..+...+..+-+.-.+++++|.+..||...--......+++++... +.++++..... ...
T Consensus 168 ~~~~~~-----~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~----~~~ 238 (385)
T TIGR00215 168 LDAIPL-----YKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNF----KRR 238 (385)
T ss_pred hhhccc-----cCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCc----hhH
Confidence 332111 0011122222233334566888888886432133445555554332 33455544322 000
Q ss_pred CCchhHHHHhc--CCceeecCCCchhhccCCCccceeeccCcchhhhhhhcCCceecc----cccc---------chhhh
Q 012744 316 AYPEGFRERVA--ARGQMISWSPQQKVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCW----PFFA---------DQFMN 380 (457)
Q Consensus 316 ~~~~~~~~~~~--~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~----P~~~---------DQ~~n 380 (457)
..-+.+.+... ..+.+..+ ...++|..+|+ +|+-+|..|+ |++++|+|+|++ |+.. .|..|
T Consensus 239 ~~~~~~~~~~~~~~~v~~~~~-~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~ 314 (385)
T TIGR00215 239 LQFEQIKAEYGPDLQLHLIDG-DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISL 314 (385)
T ss_pred HHHHHHHHHhCCCCcEEEECc-hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeec
Confidence 00011121221 22333322 23468999999 9999999888 999999999999 8642 37889
Q ss_pred HHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHhhhhcCCChHHHHHHHH
Q 012744 381 TTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGDQ----NFKARALKLKEKALSSVREGGSSNKAIQNFV 449 (457)
Q Consensus 381 a~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~~----~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 449 (457)
++.+..+ ++...+. ++..+++.|.+.+.++++|+ +++++.++--.++++.+.++|.+.++.+.++
T Consensus 315 ~nil~~~-~~~pel~---q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i~ 383 (385)
T TIGR00215 315 PNILANR-LLVPELL---QEECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRIYCNADSERAAQAVL 383 (385)
T ss_pred cHHhcCC-ccchhhc---CCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 9999985 9999886 37799999999999999998 7666666655555555545667666555443
No 37
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.75 E-value=1.5e-16 Score=145.46 Aligned_cols=258 Identities=17% Similarity=0.171 Sum_probs=154.3
Q ss_pred EEEEEcCC----CCcChHHHHHHHHHHHhCCCeEEEEeCCcchh---HHHhhhcCCCCCCCCeEEEecCCCCCCCCCcch
Q 012744 5 HVVVIPNP----EQGHVIPLLELSQNLAKHGLRITFVNSEYNHK---RVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSD 77 (457)
Q Consensus 5 ~vl~~~~~----~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (457)
||+|-+=+ +.||+.++++||++|.++||+|+|++...... .+.+. ++.+..+++...
T Consensus 1 ~i~ir~Da~~~iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~~---------g~~v~~~~~~~~------- 64 (279)
T TIGR03590 1 KILFRADASSEIGLGHVMRCLTLARALHAQGAEVAFACKPLPGDLIDLLLSA---------GFPVYELPDESS------- 64 (279)
T ss_pred CEEEEecCCccccccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHc---------CCeEEEecCCCc-------
Confidence 35555533 66999999999999999999999999865443 34343 788777764421
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchH--HHHHHHcCCceEEEechhhHHHHHHhhhhhhhhcc
Q 012744 78 MRKLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWA--IEVAEKMKLRRAVVVITSAATVALTFSIPKLIEDG 155 (457)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~--~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~ 155 (457)
.....+++++.+.+ .+||+||+|.+.... ....+..+.+.+.+--.....
T Consensus 65 -----------~~~d~~~~~~~l~~---~~~d~vV~D~y~~~~~~~~~~k~~~~~l~~iDD~~~~~-------------- 116 (279)
T TIGR03590 65 -----------RYDDALELINLLEE---EKFDILIVDHYGLDADWEKLIKEFGRKILVIDDLADRP-------------- 116 (279)
T ss_pred -----------hhhhHHHHHHHHHh---cCCCEEEEcCCCCCHHHHHHHHHhCCeEEEEecCCCCC--------------
Confidence 01223334444444 789999999865422 222334455555532111000
Q ss_pred CCCCCCCCccccccccCCCCCCCccccccccccCCcchhhHHHHHHHHHHHhhhcCcEEEEcCcccccc-hhhc-cCC-c
Q 012744 156 VINSNGTPIKEQMIQLAPNMPAISTGELFWTGIGDLTMQKFFFDFMVKNMRATRAADFQLCNSTYELEG-GAFS-MIP-E 232 (457)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~-~~~~-~~~-~ 232 (457)
..+|.++-.... .+. .+.. .++ .
T Consensus 117 -----------------------------------------------------~~~D~vin~~~~-~~~~~y~~~~~~~~ 142 (279)
T TIGR03590 117 -----------------------------------------------------HDCDLLLDQNLG-ADASDYQGLVPANC 142 (279)
T ss_pred -----------------------------------------------------cCCCEEEeCCCC-cCHhHhcccCcCCC
Confidence 012222222211 111 1111 121 3
Q ss_pred eeeeCc---ccCCCCCCCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhc--CCcEEEEEcC
Q 012744 233 LLPIGP---LLASNRLGNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTVLEQNQFQELALGLEIC--NRSFLWVVRP 307 (457)
Q Consensus 233 ~~~vGp---l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~--~~~~i~~~~~ 307 (457)
.+..|+ +..++... .. ......++.+.|++++|... .......+++++... +.++.++++.
T Consensus 143 ~~l~G~~Y~~lr~eF~~--------~~----~~~~~~~~~~~iLi~~GG~d--~~~~~~~~l~~l~~~~~~~~i~vv~G~ 208 (279)
T TIGR03590 143 RLLLGPSYALLREEFYQ--------LA----TANKRRKPLRRVLVSFGGAD--PDNLTLKLLSALAESQINISITLVTGS 208 (279)
T ss_pred eEEecchHHhhhHHHHH--------hh----HhhhcccccCeEEEEeCCcC--CcCHHHHHHHHHhccccCceEEEEECC
Confidence 456676 33322111 00 00001112357999999643 233455666777543 4567777775
Q ss_pred CCCCCCcCCCchhHHHH--hcCCceeecCCCch-hhccCCCccceeeccCcchhhhhhhcCCceeccccccchhhhHHh
Q 012744 308 DITNDANDAYPEGFRER--VAARGQMISWSPQQ-KVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPFFADQFMNTTY 383 (457)
Q Consensus 308 ~~~~~~~~~~~~~~~~~--~~~nv~~~~~~pq~-~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~ 383 (457)
. ....+.+.+. ..+|+.+..++++. ++|..+|+ +||+|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 209 ~------~~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 209 S------NPNLDELKKFAKEYPNIILFIDVENMAELMNEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred C------CcCHHHHHHHHHhCCCEEEEeCHHHHHHHHHHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 4 2222333332 24688888999985 89999999 999999 9999999999999999999999999875
No 38
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.71 E-value=2.4e-15 Score=145.17 Aligned_cols=139 Identities=17% Similarity=0.256 Sum_probs=99.6
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHhhc-CCcEEEEEcCCCCCCCcCCCchhHHH---HhcCCceeecCCCch-hhcc
Q 012744 268 ANSVIYVAFGSHTVLEQNQFQELALGLEIC-NRSFLWVVRPDITNDANDAYPEGFRE---RVAARGQMISWSPQQ-KVLT 342 (457)
Q Consensus 268 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~nv~~~~~~pq~-~ll~ 342 (457)
++++|++..|+.... ..+..+++++.+. +.+++++.+.. ..+.+.+.+ ..++|+.+.+|+++. +++.
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~------~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~ 272 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKN------EALKQSLEDLQETNPDALKVFGYVENIDELFR 272 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCC------HHHHHHHHHHHhcCCCcEEEEechhhHHHHHH
Confidence 455788877876432 2355667776543 56666666532 111122222 123578889999874 7999
Q ss_pred CCCccceeeccCcchhhhhhhcCCceecc-ccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCCHHHH
Q 012744 343 HPSISCFMSHCGWNSTTEGVSNGVPFLCW-PFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGDQNFK 421 (457)
Q Consensus 343 ~~~~~~~I~HgG~~s~~eal~~GvP~l~~-P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~ 421 (457)
.+|+ +|+.+|..|+.||+++|+|+|+. |....|..|+..+.+ .|+|+.. -+.+++.++|.++++|++.+
T Consensus 273 ~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~-~G~~~~~-------~~~~~l~~~i~~ll~~~~~~ 342 (380)
T PRK13609 273 VTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFER-KGAAVVI-------RDDEEVFAKTEALLQDDMKL 342 (380)
T ss_pred hccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHh-CCcEEEE-------CCHHHHHHHHHHHHCCHHHH
Confidence 9999 99999988999999999999985 666777889988887 4988765 26799999999999998655
Q ss_pred HHH
Q 012744 422 ARA 424 (457)
Q Consensus 422 ~~a 424 (457)
++.
T Consensus 343 ~~m 345 (380)
T PRK13609 343 LQM 345 (380)
T ss_pred HHH
Confidence 443
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.65 E-value=2.3e-14 Score=138.43 Aligned_cols=347 Identities=13% Similarity=0.069 Sum_probs=174.6
Q ss_pred CEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHHH
Q 012744 4 PHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLLE 83 (457)
Q Consensus 4 ~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (457)
|||+|...++.||+.|.. ++++|.++++++.+++.... ...+... ..++.++.++- . .+.+.+.
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~l~~----~----g~~~~~~ 65 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGP--RMQAAGC-----ESLFDMEELAV----M----GLVEVLP 65 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccH--HHHhCCC-----ccccCHHHhhh----c----cHHHHHH
Confidence 589999999999999998 99999998888888875332 2332210 01222222221 0 1111111
Q ss_pred HHHH--hcchHHHHHHHHHhcCCCCCeeEEEecCCc-chH--HHHHHHcCCceEEEechhhHHHHHHhhhhhhhhccCCC
Q 012744 84 KRLQ--VMPGKLEGLIEEIHGREGEKTACLIADGAA-GWA--IEVAEKMKLRRAVVVITSAATVALTFSIPKLIEDGVIN 158 (457)
Q Consensus 84 ~~~~--~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~-~~~--~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~ 158 (457)
.... .....+.++++. .+||+|+.-.+. .+. ...|...|||++.+.....
T Consensus 66 ~~~~~~~~~~~~~~~l~~------~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~~------------------- 120 (380)
T PRK00025 66 RLPRLLKIRRRLKRRLLA------EPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPSV------------------- 120 (380)
T ss_pred HHHHHHHHHHHHHHHHHH------cCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCch-------------------
Confidence 1111 111234444444 899998774322 233 3346778999886421100
Q ss_pred CCCCCccccccccCCCCCCCccccccccccCCcchhhHHHHHHHHHHHhhhcCcEEEEcCcccccchhhccCCceeeeCc
Q 012744 159 SNGTPIKEQMIQLAPNMPAISTGELFWTGIGDLTMQKFFFDFMVKNMRATRAADFQLCNSTYELEGGAFSMIPELLPIGP 238 (457)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~vGp 238 (457)
+ .+. .. .... ....++.+++.+...-+.. ....-++.++|.
T Consensus 121 -------------------~-------~~~--~~---~~~~-------~~~~~d~i~~~~~~~~~~~-~~~g~~~~~~G~ 161 (380)
T PRK00025 121 -------------------W-------AWR--QG---RAFK-------IAKATDHVLALFPFEAAFY-DKLGVPVTFVGH 161 (380)
T ss_pred -------------------h-------hcC--ch---HHHH-------HHHHHhhheeCCccCHHHH-HhcCCCeEEECc
Confidence 0 000 00 0000 1123455555554332221 122223677774
Q ss_pred ccCCCCCCCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhc-----CCcEEEEEcCCCCCCC
Q 012744 239 LLASNRLGNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTVLEQNQFQELALGLEIC-----NRSFLWVVRPDITNDA 313 (457)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~ 313 (457)
...+.... .+....+.+-+.-..++++|++..||...........+++++... +.+++++.+..
T Consensus 162 p~~~~~~~------~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~----- 230 (380)
T PRK00025 162 PLADAIPL------LPDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNP----- 230 (380)
T ss_pred CHHHhccc------ccChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCh-----
Confidence 33222110 011122222233223455667767765332122234444544322 34566655422
Q ss_pred cCCCchhHHHHhc----CCceeecCCCchhhccCCCccceeeccCcchhhhhhhcCCceeccccc------cc--hhhh-
Q 012744 314 NDAYPEGFRERVA----ARGQMISWSPQQKVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPFF------AD--QFMN- 380 (457)
Q Consensus 314 ~~~~~~~~~~~~~----~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~------~D--Q~~n- 380 (457)
...+.+.+... -++.+..- .-..+++.+|+ +|+.+|.+++ |++++|+|+|+.|.. .+ |..|
T Consensus 231 --~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~ 304 (380)
T PRK00025 231 --KRREQIEEALAEYAGLEVTLLDG-QKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVP 304 (380)
T ss_pred --hhHHHHHHHHhhcCCCCeEEEcc-cHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCC
Confidence 11122322221 13333221 12478999999 9999998887 999999999988432 22 2222
Q ss_pred ----HHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 012744 381 ----TTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGDQNFKARALKLKEKALSSVREGGSSNKAIQNFVQSI 452 (457)
Q Consensus 381 ----a~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 452 (457)
+..+.+. +++..+. ....++++|.+++.++++|++.+++..+-.+.+++.. ..+++.+.++.+.+.+
T Consensus 305 ~~~l~~~~~~~-~~~~~~~---~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~~~ 375 (380)
T PRK00025 305 YVSLPNLLAGR-ELVPELL---QEEATPEKLARALLPLLADGARRQALLEGFTELHQQL-RCGADERAAQAVLELL 375 (380)
T ss_pred eeehHHHhcCC-Ccchhhc---CCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHh
Confidence 2333332 3343343 2457899999999999999976654444443333332 2455544444444433
No 40
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.62 E-value=4.2e-14 Score=136.38 Aligned_cols=164 Identities=10% Similarity=0.195 Sum_probs=109.9
Q ss_pred CCCeEEEEEeCCcccCCHHHHHHHHHHH-hh-cCCcEEEEEcCCCCCCCcCCCchhHHHHh--cCCceeecCCCch-hhc
Q 012744 267 QANSVIYVAFGSHTVLEQNQFQELALGL-EI-CNRSFLWVVRPDITNDANDAYPEGFRERV--AARGQMISWSPQQ-KVL 341 (457)
Q Consensus 267 ~~~~~v~vs~Gs~~~~~~~~~~~~~~a~-~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~nv~~~~~~pq~-~ll 341 (457)
+++++|++..|+.+. ...+..+++++ .. .+.+++++.+.. ..+.+.+.+.. .+++.+.+|+.+. +++
T Consensus 200 ~~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~------~~l~~~l~~~~~~~~~v~~~G~~~~~~~~~ 271 (391)
T PRK13608 200 PDKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKS------KELKRSLTAKFKSNENVLILGYTKHMNEWM 271 (391)
T ss_pred CCCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCC------HHHHHHHHHHhccCCCeEEEeccchHHHHH
Confidence 345688888888652 23455555554 22 245666666533 11112222222 3578888999764 799
Q ss_pred cCCCccceeeccCcchhhhhhhcCCceecc-ccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCCHHH
Q 012744 342 THPSISCFMSHCGWNSTTEGVSNGVPFLCW-PFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGDQNF 420 (457)
Q Consensus 342 ~~~~~~~~I~HgG~~s~~eal~~GvP~l~~-P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~~~~ 420 (457)
..+|+ +|+..|..|+.||+++|+|+|+. |...+|..|+..+.+ .|+|+... +.+++.++|.++++|++.
T Consensus 272 ~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~-~G~g~~~~-------~~~~l~~~i~~ll~~~~~ 341 (391)
T PRK13608 272 ASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEE-KGFGKIAD-------TPEEAIKIVASLTNGNEQ 341 (391)
T ss_pred HhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHh-CCcEEEeC-------CHHHHHHHHHHHhcCHHH
Confidence 99999 99988888999999999999998 776777899999999 49998762 788999999999998753
Q ss_pred HHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 012744 421 KARALKLKEKALSSVREGGSSNKAIQNFVQSI 452 (457)
Q Consensus 421 ~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 452 (457)
+ +++++..++.. +..+..+-++.+++.+
T Consensus 342 ~---~~m~~~~~~~~-~~~s~~~i~~~l~~l~ 369 (391)
T PRK13608 342 L---TNMISTMEQDK-IKYATQTICRDLLDLI 369 (391)
T ss_pred H---HHHHHHHHHhc-CCCCHHHHHHHHHHHh
Confidence 3 44555555432 2344444444444433
No 41
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.58 E-value=1.4e-12 Score=125.74 Aligned_cols=171 Identities=13% Similarity=0.126 Sum_probs=106.3
Q ss_pred HHhccCCCCeEEEEEeCCcccCCHHH-HHHHHHHHh-----hcCCcEEEEEcCCCCCCCcCCCchhHHHH-hcCCceeec
Q 012744 261 EWLDQRQANSVIYVAFGSHTVLEQNQ-FQELALGLE-----ICNRSFLWVVRPDITNDANDAYPEGFRER-VAARGQMIS 333 (457)
Q Consensus 261 ~~l~~~~~~~~v~vs~Gs~~~~~~~~-~~~~~~a~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~nv~~~~ 333 (457)
+-+.-.+++++|++..|+........ +..+...+. ..+..++++++.. ..+.+.+.+. ...++.+.+
T Consensus 198 ~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~------~~~~~~L~~~~~~~~v~~~G 271 (382)
T PLN02605 198 RELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRN------KKLQSKLESRDWKIPVKVRG 271 (382)
T ss_pred HHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCC------HHHHHHHHhhcccCCeEEEe
Confidence 33333345667777766654333222 222322221 1235566666643 1111222211 134677889
Q ss_pred CCCch-hhccCCCccceeeccCcchhhhhhhcCCceeccccccchh-hhHHhhhhhhceeEEeeccCCCccCHHHHHHHH
Q 012744 334 WSPQQ-KVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPFFADQF-MNTTYICDVWKVGLRLERNQSGIIGREEIKNKV 411 (457)
Q Consensus 334 ~~pq~-~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~-~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i 411 (457)
|+++. ++|..+|+ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+.+. |.|... -++++|.++|
T Consensus 272 ~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g~g~~~-------~~~~~la~~i 341 (382)
T PLN02605 272 FVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-GFGAFS-------ESPKEIARIV 341 (382)
T ss_pred ccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-Cceeec-------CCHHHHHHHH
Confidence 99864 79999999 999999999999999999999998766664 689888884 999765 3789999999
Q ss_pred HHHhCC-HHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHH
Q 012744 412 DQVLGD-QNFKARALKLKEKALSSVREGGSSNKAIQNFVQS 451 (457)
Q Consensus 412 ~~~l~~-~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 451 (457)
.+++.| ++.+ ++|++..++.. ...++.+-++.+.+.
T Consensus 342 ~~ll~~~~~~~---~~m~~~~~~~~-~~~a~~~i~~~l~~~ 378 (382)
T PLN02605 342 AEWFGDKSDEL---EAMSENALKLA-RPEAVFDIVHDLHEL 378 (382)
T ss_pred HHHHcCCHHHH---HHHHHHHHHhc-CCchHHHHHHHHHHH
Confidence 999988 5533 34444444321 133443444444433
No 42
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.55 E-value=2.9e-16 Score=132.78 Aligned_cols=139 Identities=15% Similarity=0.208 Sum_probs=97.3
Q ss_pred EEEEEeCCcccCC-HHHHHHHHHHHhh--cCCcEEEEEcCCCCCCCcCCCchhHHHHhcCCceeecCCC-chhhccCCCc
Q 012744 271 VIYVAFGSHTVLE-QNQFQELALGLEI--CNRSFLWVVRPDITNDANDAYPEGFRERVAARGQMISWSP-QQKVLTHPSI 346 (457)
Q Consensus 271 ~v~vs~Gs~~~~~-~~~~~~~~~a~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p-q~~ll~~~~~ 346 (457)
+|+|+.||.+... .+.+..++..+.. .+.++++.++.. ........ .+....++.+.+|++ ..+++..+|+
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~----~~~~~~~~-~~~~~~~v~~~~~~~~m~~~m~~aDl 75 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKN----NYEELKIK-VENFNPNVKVFGFVDNMAELMAAADL 75 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTC----ECHHHCCC-HCCTTCCCEEECSSSSHHHHHHHHSE
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCC----cHHHHHHH-HhccCCcEEEEechhhHHHHHHHcCE
Confidence 5899999864321 1122233333333 257888888754 11111111 111126788999999 6789999999
Q ss_pred cceeeccCcchhhhhhhcCCceecccccc----chhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCCHHH
Q 012744 347 SCFMSHCGWNSTTEGVSNGVPFLCWPFFA----DQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGDQNF 420 (457)
Q Consensus 347 ~~~I~HgG~~s~~eal~~GvP~l~~P~~~----DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~~~~ 420 (457)
+|||||.||++|++++|+|+|++|... +|..||..+++ .|+|..+.. ...+.++|.++|..++.++..
T Consensus 76 --vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~-~g~~~~~~~---~~~~~~~L~~~i~~l~~~~~~ 147 (167)
T PF04101_consen 76 --VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAK-KGAAIMLDE---SELNPEELAEAIEELLSDPEK 147 (167)
T ss_dssp --EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHH-CCCCCCSEC---CC-SCCCHHHHHHCHCCCHH-
T ss_pred --EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHH-cCCccccCc---ccCCHHHHHHHHHHHHcCcHH
Confidence 999999999999999999999999988 99999999999 599999874 567799999999999998864
No 43
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.51 E-value=3.3e-11 Score=115.40 Aligned_cols=334 Identities=10% Similarity=0.037 Sum_probs=176.6
Q ss_pred CcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHHHHHHHhcchHH
Q 012744 14 QGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLLEKRLQVMPGKL 93 (457)
Q Consensus 14 ~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (457)
.|+...+..|+++|.++||+|++++........... ....+...+.. ...... .. -.....+
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~~~-------~~-~~~~~~~ 75 (364)
T cd03814 14 NGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGPA--------RVVPVPSVPLP--GYPEIR-------LA-LPPRRRV 75 (364)
T ss_pred cceehHHHHHHHHHHHCCCEEEEEeCCchhhccCCC--------CceeecccccC--cccceE-------ec-ccchhhH
Confidence 699999999999999999999999986543211100 01111111100 000000 00 0001123
Q ss_pred HHHHHHHhcCCCCCeeEEEecCCcc---hHHHHHHHcCCceEEEechhhHHHHHHhhhhhhhhccCCCCCCCCccccccc
Q 012744 94 EGLIEEIHGREGEKTACLIADGAAG---WAIEVAEKMKLRRAVVVITSAATVALTFSIPKLIEDGVINSNGTPIKEQMIQ 170 (457)
Q Consensus 94 ~~~~~~l~~~~~~~~D~vv~D~~~~---~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 170 (457)
...++. .+||+|++..... .+..+++..++|++.............
T Consensus 76 ~~~~~~------~~pdii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------------------------- 124 (364)
T cd03814 76 RRLLDA------FAPDVVHIATPGPLGLAALRAARRLGIPVVTSYHTDFPEYLRY------------------------- 124 (364)
T ss_pred HHHHHh------cCCCEEEEeccchhhHHHHHHHHHcCCCEEEEEecChHHHhhh-------------------------
Confidence 333334 8999998764332 456677889999887544322100000
Q ss_pred cCCCCCCCccccccccccCCcchhhHHHHHHHHHH-HhhhcCcEEEEcCcccccchhhccCCceeeeCcccCCCCCCCCC
Q 012744 171 LAPNMPAISTGELFWTGIGDLTMQKFFFDFMVKNM-RATRAADFQLCNSTYELEGGAFSMIPELLPIGPLLASNRLGNSA 249 (457)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~s~~~le~~~~~~~~~~~~vGpl~~~~~~~~~~ 249 (457)
. .. .. ......... .....++.+++.+....+.......+++..+.+-....... +
T Consensus 125 ----~-------~~-~~---------~~~~~~~~~~~~~~~~d~i~~~s~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~- 181 (364)
T cd03814 125 ----Y-------GL-GP---------LSWLAWAYLRWFHNRADRVLVPSPSLADELRARGFRRVRLWPRGVDTELFH-P- 181 (364)
T ss_pred ----c-------cc-ch---------HhHhhHHHHHHHHHhCCEEEeCCHHHHHHHhccCCCceeecCCCccccccC-c-
Confidence 0 00 00 000001111 12356788888888776532111223444443322221110 0
Q ss_pred CCCCCCcch-hhHHhccCCCCeEEEEEeCCccc-CCHHHHHHHHHHHhh-cCCcEEEEEcCCCCCCCcCCCchhHHHHhc
Q 012744 250 GYFLPEDSK-CLEWLDQRQANSVIYVAFGSHTV-LEQNQFQELALGLEI-CNRSFLWVVRPDITNDANDAYPEGFRERVA 326 (457)
Q Consensus 250 ~~~~~~~~~-l~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~a~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 326 (457)
...+.. ...+. ..++.+++..|+... ...+.+.+++..+.. .+..+++...+. ..+.+. ...
T Consensus 182 ---~~~~~~~~~~~~---~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~G~~~--------~~~~~~-~~~ 246 (364)
T cd03814 182 ---RRRDEALRARLG---PPDRPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIVGDGP--------ARARLE-ARY 246 (364)
T ss_pred ---ccccHHHHHHhC---CCCCeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEEeCCc--------hHHHHh-ccC
Confidence 001111 11221 122356677776542 233444444444433 244555554332 111111 235
Q ss_pred CCceeecCCCch---hhccCCCccceeeccC----cchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCC
Q 012744 327 ARGQMISWSPQQ---KVLTHPSISCFMSHCG----WNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQS 399 (457)
Q Consensus 327 ~nv~~~~~~pq~---~ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~ 399 (457)
.|+.+.+|+++. +++..+++ +|+++. .+++.||+++|+|+|+.+... +...+.+. +.|....
T Consensus 247 ~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~~~-~~g~~~~---- 315 (364)
T cd03814 247 PNVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIVTDG-ENGLLVE---- 315 (364)
T ss_pred CcEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhhcCC-cceEEcC----
Confidence 788899999876 48999999 887765 378999999999999887554 55566663 8888774
Q ss_pred CccCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHH
Q 012744 400 GIIGREEIKNKVDQVLGDQNFKARALKLKEKALSSVREGGSSNKAIQNFVQ 450 (457)
Q Consensus 400 ~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 450 (457)
.-+.+++.++|.+++.|++.+++..+-+.+..+ .-+.....+++++
T Consensus 316 -~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 361 (364)
T cd03814 316 -PGDAEAFAAALAALLADPELRRRMAARARAEAE----RRSWEAFLDNLLE 361 (364)
T ss_pred -CCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHh----hcCHHHHHHHHHH
Confidence 347788999999999998755444433333222 2344444555544
No 44
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.47 E-value=2.1e-11 Score=117.10 Aligned_cols=332 Identities=14% Similarity=0.083 Sum_probs=179.4
Q ss_pred CCcChHHHHHHHHHHHh--CCCeEE---EEeCCcchhH-HHhhhcCCCCCCCCeEEEecCCCCCCC-CCcchHHHHHHHH
Q 012744 13 EQGHVIPLLELSQNLAK--HGLRIT---FVNSEYNHKR-VLESLEGKNYIGEQIHLVSIPDGMEPW-DDRSDMRKLLEKR 85 (457)
Q Consensus 13 ~~GH~~p~~~la~~L~~--~Gh~Vt---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 85 (457)
++|-=.-.++||++|.+ .|++|. ++++....+. ..+. .| .+..+|.+--.. .....+......+
T Consensus 6 ghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~~~ip~--------~g-~~~~~~sgg~~~~~~~~~~~~~~~gl 76 (396)
T TIGR03492 6 GHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLGIPI--------IG-PTKELPSGGFSYQSLRGLLRDLRAGL 76 (396)
T ss_pred CchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhhCCCce--------eC-CCCCCCCCCccCCCHHHHHHHHHhhH
Confidence 44444567889999988 699999 9988664321 1111 12 344444322211 1111122222212
Q ss_pred HHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEEEechhhHHHHHHhhhhhhhhccCCCCCCCCcc
Q 012744 86 LQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAVVVITSAATVALTFSIPKLIEDGVINSNGTPIK 165 (457)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 165 (457)
...+.. ...+++... .+||+||+-.-+. ...+|...|+|++.+.+.-.... ..+..+. ..
T Consensus 77 ~~~~~~-~~~~~~~~~----~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~~-------------~~~~~~~-~~ 136 (396)
T TIGR03492 77 VGLTLG-QWRALRKWA----KKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDYY-------------WESGPRR-SP 136 (396)
T ss_pred HHHHHH-HHHHHHHHh----hcCCEEEEECcHH-HHHHHHHcCCCceEEEeecccee-------------ecCCCCC-cc
Confidence 222111 223333311 3899999887665 78889999999999655432100 0000000 00
Q ss_pred ccccccCCCCCCCccccccccccCCcchhhHHHHHHHHHHHhhhcCcEEEEcCcccccchhhccCCceeeeCcccCCCCC
Q 012744 166 EQMIQLAPNMPAISTGELFWTGIGDLTMQKFFFDFMVKNMRATRAADFQLCNSTYELEGGAFSMIPELLPIGPLLASNRL 245 (457)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~vGpl~~~~~~ 245 (457)
.+....++|... .| + . +..-....++.+++.+..+-+.. ....-++.+||--..+.-.
T Consensus 137 ~~~~~~~~G~~~-----~p------------~-e---~n~l~~~~a~~v~~~~~~t~~~l-~~~g~k~~~vGnPv~d~l~ 194 (396)
T TIGR03492 137 SDEYHRLEGSLY-----LP------------W-E---RWLMRSRRCLAVFVRDRLTARDL-RRQGVRASYLGNPMMDGLE 194 (396)
T ss_pred chhhhccCCCcc-----CH------------H-H---HHHhhchhhCEEeCCCHHHHHHH-HHCCCeEEEeCcCHHhcCc
Confidence 000111111111 00 0 0 00011256677777775544433 2333489999955444322
Q ss_pred CCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhc----CCcEEEEEcCCCCCCCcCCCchhH
Q 012744 246 GNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTVLEQNQFQELALGLEIC----NRSFLWVVRPDITNDANDAYPEGF 321 (457)
Q Consensus 246 ~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~----~~~~i~~~~~~~~~~~~~~~~~~~ 321 (457)
. .... . + .+++++|.+-.||...--...+..+++++... +..|++.+.+.. .. +.+
T Consensus 195 ~-------~~~~---~-l--~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~------~~-~~~ 254 (396)
T TIGR03492 195 P-------PERK---P-L--LTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSL------SL-EKL 254 (396)
T ss_pred c-------cccc---c-c--CCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCC------CH-HHH
Confidence 1 0000 0 1 22345888888887432223344555555443 567777774331 01 112
Q ss_pred HHHhc-------------------CCceeecCCCc-hhhccCCCccceeeccCcchhhhhhhcCCceeccccccchhhhH
Q 012744 322 RERVA-------------------ARGQMISWSPQ-QKVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPFFADQFMNT 381 (457)
Q Consensus 322 ~~~~~-------------------~nv~~~~~~pq-~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na 381 (457)
.+... +++.+..+..+ .+++..+++ +|+-+|..| .|+...|+|+|++|+-..|. |+
T Consensus 255 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na 330 (396)
T TIGR03492 255 QAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TY 330 (396)
T ss_pred HHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HH
Confidence 11111 12445455433 579999999 999999766 99999999999999877786 88
Q ss_pred Hhhhhhh----ceeEEeeccCCCccCHHHHHHHHHHHhCCHHHHHHHH
Q 012744 382 TYICDVW----KVGLRLERNQSGIIGREEIKNKVDQVLGDQNFKARAL 425 (457)
Q Consensus 382 ~~v~~~l----G~g~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~ 425 (457)
...++ . |.++.+. ..+.+.|.+++.++++|++.+++..
T Consensus 331 ~~~~~-~~~l~g~~~~l~-----~~~~~~l~~~l~~ll~d~~~~~~~~ 372 (396)
T TIGR03492 331 GFAEA-QSRLLGGSVFLA-----SKNPEQAAQVVRQLLADPELLERCR 372 (396)
T ss_pred HHHHh-hHhhcCCEEecC-----CCCHHHHHHHHHHHHcCHHHHHHHH
Confidence 76554 3 6666663 2455999999999999987655444
No 45
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.43 E-value=5.5e-13 Score=109.10 Aligned_cols=125 Identities=17% Similarity=0.189 Sum_probs=82.4
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHHHHH
Q 012744 6 VVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLLEKR 85 (457)
Q Consensus 6 vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (457)
|+|.+.|+.||++|+++||++|++|||+|++++++.+.+.+.+. |++|+.++... ...........+...
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~---------Gl~~~~~~~~~-~~~~~~~~~~~~~~~ 70 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAA---------GLEFVPIPGDS-RLPRSLEPLANLRRL 70 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHT---------T-EEEESSSCG-GGGHHHHHHHHHHCH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccccc---------CceEEEecCCc-CcCcccchhhhhhhH
Confidence 68999999999999999999999999999999999999999776 89999997650 000000011111111
Q ss_pred HHh--cchHHHHHHHHHh-c-----CCCCCeeEEEecCCcchHHHHHHHcCCceEEEechhhH
Q 012744 86 LQV--MPGKLEGLIEEIH-G-----REGEKTACLIADGAAGWAIEVAEKMKLRRAVVVITSAA 140 (457)
Q Consensus 86 ~~~--~~~~~~~~~~~l~-~-----~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 140 (457)
.+. ......+.+.... + ......|+++.+.....+..+|+++|||++.....+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 71 ARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWF 133 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGG
T ss_pred HHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcC
Confidence 111 0011122222111 1 11246788888988889999999999999998777654
No 46
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.42 E-value=6.8e-10 Score=109.99 Aligned_cols=131 Identities=15% Similarity=0.157 Sum_probs=85.1
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHhhc-CCcEEEEEcCCCCCCCcCCCchhHHHHh-cCCceeecCCCch---hhccCCC
Q 012744 271 VIYVAFGSHTVLEQNQFQELALGLEIC-NRSFLWVVRPDITNDANDAYPEGFRERV-AARGQMISWSPQQ---KVLTHPS 345 (457)
Q Consensus 271 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~nv~~~~~~pq~---~ll~~~~ 345 (457)
.+++..|+.. ....+..++++++.. +.+++++..+. ..+.+.+.. ..+|.+.+++++. .++..+|
T Consensus 264 ~~i~~vGrl~--~~K~~~~li~a~~~~~~~~l~ivG~G~--------~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aD 333 (465)
T PLN02871 264 PLIVYVGRLG--AEKNLDFLKRVMERLPGARLAFVGDGP--------YREELEKMFAGTPTVFTGMLQGDELSQAYASGD 333 (465)
T ss_pred eEEEEeCCCc--hhhhHHHHHHHHHhCCCcEEEEEeCCh--------HHHHHHHHhccCCeEEeccCCHHHHHHHHHHCC
Confidence 4556668754 234466677777655 45655554332 122333222 3578888999865 4899999
Q ss_pred ccceeeccC----cchhhhhhhcCCceeccccccchhhhHHhhhh---hhceeEEeeccCCCccCHHHHHHHHHHHhCCH
Q 012744 346 ISCFMSHCG----WNSTTEGVSNGVPFLCWPFFADQFMNTTYICD---VWKVGLRLERNQSGIIGREEIKNKVDQVLGDQ 418 (457)
Q Consensus 346 ~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~---~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~~ 418 (457)
+ +|.-.. ..++.||+++|+|+|+..... ....+.+ . +.|..++. -+.++++++|.++++|+
T Consensus 334 v--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv~~~~~~-~~G~lv~~-----~d~~~la~~i~~ll~~~ 401 (465)
T PLN02871 334 V--FVMPSESETLGFVVLEAMASGVPVVAARAGG----IPDIIPPDQEG-KTGFLYTP-----GDVDDCVEKLETLLADP 401 (465)
T ss_pred E--EEECCcccccCcHHHHHHHcCCCEEEcCCCC----cHhhhhcCCCC-CceEEeCC-----CCHHHHHHHHHHHHhCH
Confidence 9 886543 347889999999999875432 2333333 3 67877743 37899999999999988
Q ss_pred HHHHH
Q 012744 419 NFKAR 423 (457)
Q Consensus 419 ~~~~~ 423 (457)
+.+++
T Consensus 402 ~~~~~ 406 (465)
T PLN02871 402 ELRER 406 (465)
T ss_pred HHHHH
Confidence 64443
No 47
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.42 E-value=1.7e-11 Score=105.95 Aligned_cols=296 Identities=18% Similarity=0.160 Sum_probs=185.9
Q ss_pred CEEEEEcCC----CCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHH
Q 012744 4 PHVVVIPNP----EQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMR 79 (457)
Q Consensus 4 ~~vl~~~~~----~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (457)
|||+|.+=+ +.||+.+++.||++|.++|..++|++.+...+.+.+.. .++.+....
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~~~~~~~-------~~f~~~~~~------------- 60 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEAIIHKVY-------EGFKVLEGR------------- 60 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhhhhhhhh-------hhccceeee-------------
Confidence 688888865 55999999999999999999999999877555332210 012111100
Q ss_pred HHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcc---hHHHHHHHcCCceEEEechhhHHHHHHhhhhhhhhccC
Q 012744 80 KLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAG---WAIEVAEKMKLRRAVVVITSAATVALTFSIPKLIEDGV 156 (457)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~---~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~ 156 (457)
. ...+.. .++|++|.|.... -...+..+.+.+.+.+-.-......
T Consensus 61 -----------~--~n~ik~------~k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~~~~------------- 108 (318)
T COG3980 61 -----------G--NNLIKE------EKFDLLIFDSYGLNADDFKLIKEEAGSKILIFDDENAKSFK------------- 108 (318)
T ss_pred -----------c--cccccc------ccCCEEEEeccCCCHHHHHHHHHHhCCcEEEecCCCccchh-------------
Confidence 0 003333 8999999998777 4466777889999986332211000
Q ss_pred CCCCCCCccccccccCCCCCCCccccccccccCCcchhhHHHHHHHHHHHhhhcCcEEEEcCcccccchhhccCCc-eee
Q 012744 157 INSNGTPIKEQMIQLAPNMPAISTGELFWTGIGDLTMQKFFFDFMVKNMRATRAADFQLCNSTYELEGGAFSMIPE-LLP 235 (457)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~-~~~ 235 (457)
..++..+.... -+... --.+.+ -++
T Consensus 109 -----------------------d~d~ivN~~~~-------------------------a~~~y------~~v~~k~~~~ 134 (318)
T COG3980 109 -----------------------DNDLIVNAILN-------------------------ANDYY------GLVPNKTRYY 134 (318)
T ss_pred -----------------------hhHhhhhhhhc-------------------------chhhc------cccCcceEEE
Confidence 00000000000 00000 011112 245
Q ss_pred eCcccCCCCCCCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhcCCcEEEEEcCCCCCCCcC
Q 012744 236 IGPLLASNRLGNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTVLEQNQFQELALGLEICNRSFLWVVRPDITNDAND 315 (457)
Q Consensus 236 vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~ 315 (457)
.||-...-... |....++ .-.+ +..-|+|++| ++.+....-+++..+.+.++.+-+++++. .
T Consensus 135 lGp~y~~lr~e-----F~~~r~~----~~~r-~~r~ilI~lG--GsDpk~lt~kvl~~L~~~~~nl~iV~gs~------~ 196 (318)
T COG3980 135 LGPGYAPLRPE-----FYALREE----NTER-PKRDILITLG--GSDPKNLTLKVLAELEQKNVNLHIVVGSS------N 196 (318)
T ss_pred ecCCceeccHH-----HHHhHHH----Hhhc-chheEEEEcc--CCChhhhHHHHHHHhhccCeeEEEEecCC------C
Confidence 55443321110 0001110 1111 2236999999 44455677778888887787776777643 2
Q ss_pred CCchhHHHHh--cCCceeecCCC-chhhccCCCccceeeccCcchhhhhhhcCCceeccccccchhhhHHhhhhhhceeE
Q 012744 316 AYPEGFRERV--AARGQMISWSP-QQKVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGL 392 (457)
Q Consensus 316 ~~~~~~~~~~--~~nv~~~~~~p-q~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~ 392 (457)
+-++++..+. .+|..+..... ...|+..|++ .|+-||. |+.|++.-|+|.+++|+..-|--.|...+. +|+-.
T Consensus 197 p~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~-lg~~~ 272 (318)
T COG3980 197 PTLKNLRKRAEKYPNINLYIDTNDMAELMKEADL--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEA-LGIIK 272 (318)
T ss_pred cchhHHHHHHhhCCCeeeEecchhHHHHHHhcch--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHh-cCchh
Confidence 3334444433 36666665554 4579999999 9999987 999999999999999999999999999888 69888
Q ss_pred EeeccCCCccCHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 012744 393 RLERNQSGIIGREEIKNKVDQVLGDQNFKARALKLKEKA 431 (457)
Q Consensus 393 ~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~ 431 (457)
.+.. .+++......+.++..|...|++.-..++.+
T Consensus 273 ~l~~----~l~~~~~~~~~~~i~~d~~~rk~l~~~~~~i 307 (318)
T COG3980 273 QLGY----HLKDLAKDYEILQIQKDYARRKNLSFGSKLI 307 (318)
T ss_pred hccC----CCchHHHHHHHHHhhhCHHHhhhhhhcccee
Confidence 8853 3778888888889999988887766555443
No 48
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.38 E-value=1.4e-09 Score=105.59 Aligned_cols=85 Identities=16% Similarity=0.146 Sum_probs=62.0
Q ss_pred cCCceeecCCCchh---hccCCCccceee---ccCc-chhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccC
Q 012744 326 AARGQMISWSPQQK---VLTHPSISCFMS---HCGW-NSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQ 398 (457)
Q Consensus 326 ~~nv~~~~~~pq~~---ll~~~~~~~~I~---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~ 398 (457)
.++|.+.+++|+.+ +|..+++ +|. +.|. .++.||+++|+|+|+... ......+... ..|..++.
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas~~----~g~~e~i~~~-~~G~lv~~-- 350 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGSDT----APVREVITDG-ENGLLVDF-- 350 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEcCC----CCchhhcccC-CceEEcCC--
Confidence 36788889999764 7788888 663 2232 489999999999998643 3455565553 56776642
Q ss_pred CCccCHHHHHHHHHHHhCCHHHHH
Q 012744 399 SGIIGREEIKNKVDQVLGDQNFKA 422 (457)
Q Consensus 399 ~~~~~~~~l~~~i~~~l~~~~~~~ 422 (457)
-+.++++++|.++++|++.++
T Consensus 351 ---~d~~~la~~i~~ll~~~~~~~ 371 (396)
T cd03818 351 ---FDPDALAAAVIELLDDPARRA 371 (396)
T ss_pred ---CCHHHHHHHHHHHHhCHHHHH
Confidence 478999999999999985433
No 49
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.34 E-value=1.1e-09 Score=105.52 Aligned_cols=344 Identities=15% Similarity=0.071 Sum_probs=173.7
Q ss_pred EEEEEcCC----CCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHH
Q 012744 5 HVVVIPNP----EQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRK 80 (457)
Q Consensus 5 ~vl~~~~~----~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (457)
||++++.. ..|+-..+..+++.|+++||+|++++....................++++..++....... ..+..
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 78 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKGYKREEVDGVRVHRVPLPPYKKN--GLLKR 78 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCcccccccccceEEecCCeEEEEEecCCCCcc--chHHH
Confidence 46666533 2589999999999999999999999976543322210000000113566665543222111 11111
Q ss_pred HHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcc----hHHHHHHHcCCceEEEechhhHHHHHHhhhhhhhhccC
Q 012744 81 LLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAG----WAIEVAEKMKLRRAVVVITSAATVALTFSIPKLIEDGV 156 (457)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~----~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~ 156 (457)
... ...........+.. .. .+||+|++..... .+..++...++|++.............
T Consensus 79 ~~~-~~~~~~~~~~~~~~--~~---~~~D~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~----------- 141 (394)
T cd03794 79 LLN-YLSFALSALLALLK--RR---RRPDVIIATSPPLLIALAALLLARLKGAPFVLEVRDLWPESAVA----------- 141 (394)
T ss_pred HHh-hhHHHHHHHHHHHh--cc---cCCCEEEEcCChHHHHHHHHHHHHhcCCCEEEEehhhcchhHHH-----------
Confidence 111 11111111111111 12 7899999996121 344556667999988643321100000
Q ss_pred CCCCCCCccccccccCCCCCCCccccccccccCCcchhhHHHHHHHHH-HHhhhcCcEEEEcCcccccchh-hcc-CCce
Q 012744 157 INSNGTPIKEQMIQLAPNMPAISTGELFWTGIGDLTMQKFFFDFMVKN-MRATRAADFQLCNSTYELEGGA-FSM-IPEL 233 (457)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~s~~~le~~~-~~~-~~~~ 233 (457)
. ....... ......... ...+..++.+++.+....+.-. ... ..++
T Consensus 142 --------------------------~--~~~~~~~---~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~~~~~~~~~~ 190 (394)
T cd03794 142 --------------------------L--GLLKNGS---LLYRLLRKLERLIYRRADAIVVISPGMREYLVRRGVPPEKI 190 (394)
T ss_pred --------------------------c--cCccccc---hHHHHHHHHHHHHHhcCCEEEEECHHHHHHHHhcCCCcCce
Confidence 0 0000000 001111111 1134678888888876554321 111 2345
Q ss_pred eeeCcccCCCCCCCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCccc-CCHHHHHHHHHHHhhc-CCcEEEEEcCCCCC
Q 012744 234 LPIGPLLASNRLGNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTV-LEQNQFQELALGLEIC-NRSFLWVVRPDITN 311 (457)
Q Consensus 234 ~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~ 311 (457)
..+........... ........... ..+++.+++..|+... ...+.+...+..+... +.++++...+.
T Consensus 191 ~~i~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i~G~~~--- 260 (394)
T cd03794 191 SVIPNGVDLELFKP-----PPADESLRKEL--GLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLIVGDGP--- 260 (394)
T ss_pred EEcCCCCCHHHcCC-----ccchhhhhhcc--CCCCcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEEeCCcc---
Confidence 45543333221110 00000000111 1233467777887643 2334444444444333 45554443322
Q ss_pred CCcCCCchhHHH----HhcCCceeecCCCch---hhccCCCccceeeccC---------cchhhhhhhcCCceecccccc
Q 012744 312 DANDAYPEGFRE----RVAARGQMISWSPQQ---KVLTHPSISCFMSHCG---------WNSTTEGVSNGVPFLCWPFFA 375 (457)
Q Consensus 312 ~~~~~~~~~~~~----~~~~nv~~~~~~pq~---~ll~~~~~~~~I~HgG---------~~s~~eal~~GvP~l~~P~~~ 375 (457)
..+.+.+ ....|+.+.+++++. +++..+++ +|.... -+++.||+++|+|+|+.+...
T Consensus 261 -----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~ 333 (394)
T cd03794 261 -----EKEELKELAKALGLDNVTFLGRVPKEELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGE 333 (394)
T ss_pred -----cHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCC
Confidence 1122222 224788888999865 47888998 775433 234799999999999988765
Q ss_pred chhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCCHHHHHHHH
Q 012744 376 DQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGDQNFKARAL 425 (457)
Q Consensus 376 DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~ 425 (457)
.+. .+.+ .+.|..+.. -+.++++++|.++++|++.+++..
T Consensus 334 ~~~----~~~~-~~~g~~~~~-----~~~~~l~~~i~~~~~~~~~~~~~~ 373 (394)
T cd03794 334 SAE----LVEE-AGAGLVVPP-----GDPEALAAAILELLDDPEERAEMG 373 (394)
T ss_pred chh----hhcc-CCcceEeCC-----CCHHHHHHHHHHHHhChHHHHHHH
Confidence 433 3344 266776642 378999999999998876544433
No 50
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.32 E-value=2.5e-09 Score=102.00 Aligned_cols=137 Identities=14% Similarity=0.145 Sum_probs=84.4
Q ss_pred CeEEEEEeCCccc-CCHHHHHHHHHHHhhcCCcEEEEEcCCCCCCCcCCCchhHHHHhcCCceeecCCCch---hhccCC
Q 012744 269 NSVIYVAFGSHTV-LEQNQFQELALGLEICNRSFLWVVRPDITNDANDAYPEGFRERVAARGQMISWSPQQ---KVLTHP 344 (457)
Q Consensus 269 ~~~v~vs~Gs~~~-~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~---~ll~~~ 344 (457)
++.+++..|+... ...+.+..++..+...+.++++...+. .............++.+.+++++. .++..+
T Consensus 190 ~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~l~i~G~~~------~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~a 263 (359)
T cd03823 190 GRLRFGFIGQLTPHKGVDLLLEAFKRLPRGDIELVIVGNGL------ELEEESYELEGDPRVEFLGAYPQEEIDDFYAEI 263 (359)
T ss_pred CceEEEEEecCccccCHHHHHHHHHHHHhcCcEEEEEcCch------hhhHHHHhhcCCCeEEEeCCCCHHHHHHHHHhC
Confidence 3466777787643 223333333333333356665554432 000000000124788889999865 479999
Q ss_pred Cccceeec----cCc-chhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCCHH
Q 012744 345 SISCFMSH----CGW-NSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGDQN 419 (457)
Q Consensus 345 ~~~~~I~H----gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~~~ 419 (457)
++ +|+. .|. .++.||+++|+|+|+.+.. .....+.+. +.|..+.. -+.+++.++|.++++|+.
T Consensus 264 d~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~e~i~~~-~~g~~~~~-----~d~~~l~~~i~~l~~~~~ 331 (359)
T cd03823 264 DV--LVVPSIWPENFPLVIREALAAGVPVIASDIG----GMAELVRDG-VNGLLFPP-----GDAEDLAAALERLIDDPD 331 (359)
T ss_pred CE--EEEcCcccCCCChHHHHHHHCCCCEEECCCC----CHHHHhcCC-CcEEEECC-----CCHHHHHHHHHHHHhChH
Confidence 98 7742 333 4799999999999986543 355666663 57887753 368999999999999876
Q ss_pred HHHH
Q 012744 420 FKAR 423 (457)
Q Consensus 420 ~~~~ 423 (457)
.++.
T Consensus 332 ~~~~ 335 (359)
T cd03823 332 LLER 335 (359)
T ss_pred HHHH
Confidence 4443
No 51
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.29 E-value=6.4e-09 Score=101.38 Aligned_cols=330 Identities=16% Similarity=0.120 Sum_probs=164.7
Q ss_pred CCCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHH
Q 012744 2 SSPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKL 81 (457)
Q Consensus 2 ~~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (457)
+++||++++..-.|+-..+..+|+.|+++||+|++++.+......... ...++.++.++..-............
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~ 75 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEIL------SNPNITIHPLPPPPQRLNKLPFLLFA 75 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHh------cCCCEEEEECCCCccccccchHHHHH
Confidence 357888888888888899999999999999999999865422111100 11378887775321011111111111
Q ss_pred HHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecC-Ccc----hHHHHHHHcCCceEEEechhhHHHHHHhhhhhhhhccC
Q 012744 82 LEKRLQVMPGKLEGLIEEIHGREGEKTACLIADG-AAG----WAIEVAEKMKLRRAVVVITSAATVALTFSIPKLIEDGV 156 (457)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~-~~~----~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~ 156 (457)
.......+...+..++.. .+||+|++.. ... .+..++...++|+|..+.........
T Consensus 76 ~~~~~~~~~~~~~~l~~~------~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h~~~~~~~~------------ 137 (415)
T cd03816 76 PLKVLWQFFSLLWLLYKL------RPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWHNYGYTILA------------ 137 (415)
T ss_pred HHHHHHHHHHHHHHHHhc------CCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcCCchHHHHh------------
Confidence 111111112222233333 6899998753 221 24445666799988753322110000
Q ss_pred CCCCCCCccccccccCCCCCCCccccccccccCCcchhhHHHHHHHHHHH-hhhcCcEEEEcCcccccchhh-ccC-Cce
Q 012744 157 INSNGTPIKEQMIQLAPNMPAISTGELFWTGIGDLTMQKFFFDFMVKNMR-ATRAADFQLCNSTYELEGGAF-SMI-PEL 233 (457)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~s~~~le~~~~-~~~-~~~ 233 (457)
. . ... .......+..... ....+|.+++.|...-+.-.. ..+ .++
T Consensus 138 ---------------------~-------~-~~~---~~~~~~~~~~~e~~~~~~ad~ii~vS~~~~~~l~~~~~~~~ki 185 (415)
T cd03816 138 ---------------------L-------K-LGE---NHPLVRLAKWYEKLFGRLADYNLCVTKAMKEDLQQFNNWKIRA 185 (415)
T ss_pred ---------------------c-------c-cCC---CCHHHHHHHHHHHHHhhcCCEeeecCHHHHHHHHhhhccCCCe
Confidence 0 0 000 0000111111111 125678888887764332111 111 222
Q ss_pred eeeCcccCCCCCCCCCCCCCCCcchhhHHhc----------------cCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhc
Q 012744 234 LPIGPLLASNRLGNSAGYFLPEDSKCLEWLD----------------QRQANSVIYVAFGSHTVLEQNQFQELALGLEIC 297 (457)
Q Consensus 234 ~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~----------------~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~ 297 (457)
..|.........+ .+....-..+.. ..+++..++++.|... ..+.+..+++|+...
T Consensus 186 ~vI~Ng~~~~f~p------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~grl~--~~K~~~~li~A~~~l 257 (415)
T cd03816 186 TVLYDRPPEQFRP------LPLEEKHELFLKLAKTFLTRELRIGAVQLSEERPALLVSSTSWT--PDEDFGILLDALVAY 257 (415)
T ss_pred eecCCCCHHHcee------CcHHHHHHHHHhccccccccccccccceecCCCceEEEEecccc--CCCCHHHHHHHHHHH
Confidence 2221110000000 000000011110 1123445666677653 223344444444321
Q ss_pred -----------CCcEEEEEcCCCCCCCcCCCchhHHHH---hc-CCceee-cCCCch---hhccCCCccceee-c-c--C
Q 012744 298 -----------NRSFLWVVRPDITNDANDAYPEGFRER---VA-ARGQMI-SWSPQQ---KVLTHPSISCFMS-H-C--G 354 (457)
Q Consensus 298 -----------~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~-~nv~~~-~~~pq~---~ll~~~~~~~~I~-H-g--G 354 (457)
+.+++++..+. ..+.+.+. .. +|+.+. +|+|.. ++|..+++ +|. + . |
T Consensus 258 ~~~~~~~~~~~~i~l~ivG~G~--------~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~ 327 (415)
T cd03816 258 EKSAATGPKLPKLLCIITGKGP--------LKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSG 327 (415)
T ss_pred HHhhcccccCCCEEEEEEecCc--------cHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccc
Confidence 23444443322 22233322 22 456544 688865 47889999 663 1 1 2
Q ss_pred ---cchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCC
Q 012744 355 ---WNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGD 417 (457)
Q Consensus 355 ---~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~ 417 (457)
-+++.|++++|+|+|+... ......+++. +.|..+ + +.++++++|..+++|
T Consensus 328 ~~~p~~~~Eama~G~PVI~s~~----~~~~eiv~~~-~~G~lv-----~--d~~~la~~i~~ll~~ 381 (415)
T cd03816 328 LDLPMKVVDMFGCGLPVCALDF----KCIDELVKHG-ENGLVF-----G--DSEELAEQLIDLLSN 381 (415)
T ss_pred cCCcHHHHHHHHcCCCEEEeCC----CCHHHHhcCC-CCEEEE-----C--CHHHHHHHHHHHHhc
Confidence 3479999999999998643 2455666664 688776 2 689999999999998
No 52
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.28 E-value=7.1e-09 Score=99.40 Aligned_cols=130 Identities=12% Similarity=0.103 Sum_probs=82.4
Q ss_pred eEEEEEeCCccc-CCHHHHHHHHHHHhh--cCCcEEEEEcCCCCCCCcCCCchhHHHH-----hcCCceeecCCCch---
Q 012744 270 SVIYVAFGSHTV-LEQNQFQELALGLEI--CNRSFLWVVRPDITNDANDAYPEGFRER-----VAARGQMISWSPQQ--- 338 (457)
Q Consensus 270 ~~v~vs~Gs~~~-~~~~~~~~~~~a~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~nv~~~~~~pq~--- 338 (457)
+.+++..|+... ...+.+..++..+.. .+.++++...+. ..+.+.+. ...++.+.+++|+.
T Consensus 202 ~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~--------~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 273 (374)
T cd03817 202 EPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGP--------EREELEELARELGLADRVIFTGFVPREELP 273 (374)
T ss_pred CeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCc--------hHHHHHHHHHHcCCCCcEEEeccCChHHHH
Confidence 356667777643 233444444444433 345555554332 11222221 24688889999976
Q ss_pred hhccCCCccceeecc----CcchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHH
Q 012744 339 KVLTHPSISCFMSHC----GWNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQV 414 (457)
Q Consensus 339 ~ll~~~~~~~~I~Hg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~ 414 (457)
.++..+++ +|..+ ...++.||+++|+|+|+.... ..+..+.+. +.|..+.. -+. ++.+++.++
T Consensus 274 ~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~----~~~~~i~~~-~~g~~~~~-----~~~-~~~~~i~~l 340 (374)
T cd03817 274 DYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDAP----GLPDLVADG-ENGFLFPP-----GDE-ALAEALLRL 340 (374)
T ss_pred HHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCCC----ChhhheecC-ceeEEeCC-----CCH-HHHHHHHHH
Confidence 47889998 77443 347899999999999986543 355666663 77877753 122 999999999
Q ss_pred hCCHHH
Q 012744 415 LGDQNF 420 (457)
Q Consensus 415 l~~~~~ 420 (457)
+++++.
T Consensus 341 ~~~~~~ 346 (374)
T cd03817 341 LQDPEL 346 (374)
T ss_pred HhChHH
Confidence 998853
No 53
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.27 E-value=4.4e-09 Score=101.27 Aligned_cols=85 Identities=12% Similarity=0.082 Sum_probs=62.1
Q ss_pred cCCceeecCCCc-hhhccCCCccceeec----cCcchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCCC
Q 012744 326 AARGQMISWSPQ-QKVLTHPSISCFMSH----CGWNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSG 400 (457)
Q Consensus 326 ~~nv~~~~~~pq-~~ll~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~ 400 (457)
.+++.+.++.++ .+++..+++ +|.- |.-.++.||+++|+|+|+... ...+..+.+. ..|...+.
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i~~~-~~G~~~~~---- 320 (371)
T cd04962 252 QDDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNA----GGIPEVVKHG-ETGFLVDV---- 320 (371)
T ss_pred CceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhhcCC-CceEEcCC----
Confidence 357888888775 478999998 7733 334699999999999998644 3455566653 56766642
Q ss_pred ccCHHHHHHHHHHHhCCHHHHH
Q 012744 401 IIGREEIKNKVDQVLGDQNFKA 422 (457)
Q Consensus 401 ~~~~~~l~~~i~~~l~~~~~~~ 422 (457)
-+.++++++|.++++|+..++
T Consensus 321 -~~~~~l~~~i~~l~~~~~~~~ 341 (371)
T cd04962 321 -GDVEAMAEYALSLLEDDELWQ 341 (371)
T ss_pred -CCHHHHHHHHHHHHhCHHHHH
Confidence 478999999999999875433
No 54
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.27 E-value=7e-09 Score=100.82 Aligned_cols=331 Identities=13% Similarity=0.104 Sum_probs=166.6
Q ss_pred CcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHHHHHHHhcchHH
Q 012744 14 QGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLLEKRLQVMPGKL 93 (457)
Q Consensus 14 ~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (457)
.|.-..+..|++.|+++||+|++++.......... .....++.+..++................. ...
T Consensus 21 GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 88 (398)
T cd03800 21 GGQNVYVLELARALARLGHEVDIFTRRIDDALPPI-----VELAPGVRVVRVPAGPAEYLPKEELWPYLD-------EFA 88 (398)
T ss_pred CceeehHHHHHHHHhccCceEEEEEecCCcccCCc-----cccccceEEEecccccccCCChhhcchhHH-------HHH
Confidence 47888999999999999999999986443221110 011136776666432111101001111111 112
Q ss_pred HHHHHHHhcCCCCCeeEEEecCCcc--hHHHHHHHcCCceEEEechhhHHHHHHhhhhhhhhccCCCCCCCCcccccccc
Q 012744 94 EGLIEEIHGREGEKTACLIADGAAG--WAIEVAEKMKLRRAVVVITSAATVALTFSIPKLIEDGVINSNGTPIKEQMIQL 171 (457)
Q Consensus 94 ~~~~~~l~~~~~~~~D~vv~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 171 (457)
..++..++... .+||+|++..... .+..+++.+|+|++.........
T Consensus 89 ~~~~~~~~~~~-~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~------------------------------ 137 (398)
T cd03800 89 DDLLRFLRREG-GRPDLIHAHYWDSGLVALLLARRLGIPLVHTFHSLGAV------------------------------ 137 (398)
T ss_pred HHHHHHHHhcC-CCccEEEEecCccchHHHHHHhhcCCceEEEeeccccc------------------------------
Confidence 22333333311 2899999875333 56677888999988643221100
Q ss_pred CCCCCCCccccccccccCCcchhhHHHHHHHHHHHhhhcCcEEEEcCcccccchhhcc---CCceeeeCcccCCCCCCCC
Q 012744 172 APNMPAISTGELFWTGIGDLTMQKFFFDFMVKNMRATRAADFQLCNSTYELEGGAFSM---IPELLPIGPLLASNRLGNS 248 (457)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~---~~~~~~vGpl~~~~~~~~~ 248 (457)
.......... . ............+..++.+++.+....+.-.... ..++..|.+-........
T Consensus 138 -------~~~~~~~~~~-~-----~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~vi~ng~~~~~~~~- 203 (398)
T cd03800 138 -------KRRHLGAADT-Y-----EPARRIEAEERLLRAADRVIASTPQEAEELYSLYGAYPRRIRVVPPGVDLERFTP- 203 (398)
T ss_pred -------CCcccccccc-c-----chhhhhhHHHHHHhhCCEEEEcCHHHHHHHHHHccccccccEEECCCCCccceec-
Confidence 0000000000 0 0000000111234678888888876432221111 112444443332211100
Q ss_pred CCCCCCCcch-hhHHhccCCCCeEEEEEeCCccc-CCHHHHHHHHHHHhh--cCCcEEEEEcCCCCCCCcCCCch---hH
Q 012744 249 AGYFLPEDSK-CLEWLDQRQANSVIYVAFGSHTV-LEQNQFQELALGLEI--CNRSFLWVVRPDITNDANDAYPE---GF 321 (457)
Q Consensus 249 ~~~~~~~~~~-l~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~a~~~--~~~~~i~~~~~~~~~~~~~~~~~---~~ 321 (457)
...... ...+ .... ...+++..|+... ...+.+-..+..+.. .+.+++++.++..... ..... .+
T Consensus 204 ----~~~~~~~~~~~-~~~~-~~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~--~~~~~~~~~~ 275 (398)
T cd03800 204 ----YGRAEARRARL-LRDP-DKPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDDIL--AMDEEELREL 275 (398)
T ss_pred ----ccchhhHHHhh-ccCC-CCcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcch--hhhhHHHHHH
Confidence 001011 1111 1222 2356677787642 222333333333322 2356666654431000 00000 11
Q ss_pred HHH--hcCCceeecCCCchh---hccCCCccceeeccC----cchhhhhhhcCCceeccccccchhhhHHhhhhhhceeE
Q 012744 322 RER--VAARGQMISWSPQQK---VLTHPSISCFMSHCG----WNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGL 392 (457)
Q Consensus 322 ~~~--~~~nv~~~~~~pq~~---ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~ 392 (457)
.+. ...++.+.+|+|+.+ ++..+++ +++.+- ..++.||+++|+|+|+..... ....+.+. +.|.
T Consensus 276 ~~~~~~~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~----~~e~i~~~-~~g~ 348 (398)
T cd03800 276 ARELGVIDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVGG----PRDIVVDG-VTGL 348 (398)
T ss_pred HHhcCCCceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCCC----HHHHccCC-CCeE
Confidence 111 236788889999764 6888998 875432 368999999999999876433 55566663 7888
Q ss_pred EeeccCCCccCHHHHHHHHHHHhCCHHHH
Q 012744 393 RLERNQSGIIGREEIKNKVDQVLGDQNFK 421 (457)
Q Consensus 393 ~l~~~~~~~~~~~~l~~~i~~~l~~~~~~ 421 (457)
..+. -+.++++++|.++++|++.+
T Consensus 349 ~~~~-----~~~~~l~~~i~~l~~~~~~~ 372 (398)
T cd03800 349 LVDP-----RDPEALAAALRRLLTDPALR 372 (398)
T ss_pred EeCC-----CCHHHHHHHHHHHHhCHHHH
Confidence 7742 47899999999999987543
No 55
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.27 E-value=1.2e-08 Score=97.31 Aligned_cols=311 Identities=16% Similarity=0.131 Sum_probs=167.2
Q ss_pred CcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHHHHHHHhcchHH
Q 012744 14 QGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLLEKRLQVMPGKL 93 (457)
Q Consensus 14 ~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (457)
.|+...+..+++.|.+.||+|++++............ ........ ..... ... ..........+
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~-------~~~~~~~~-----~~~~~--~~~--~~~~~~~~~~~ 77 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEV-------GGIVVVRP-----PPLLR--VRR--LLLLLLLALRL 77 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeee-------cCcceecC-----Ccccc--cch--hHHHHHHHHHH
Confidence 6899999999999999999999999866543222110 00000000 00000 000 00001111223
Q ss_pred HHHHHHHhcCCCCCeeEEEecCCcchHH--HHHHHcCCceEEEechhhHHHHHHhhhhhhhhccCCCCCCCCcccccccc
Q 012744 94 EGLIEEIHGREGEKTACLIADGAAGWAI--EVAEKMKLRRAVVVITSAATVALTFSIPKLIEDGVINSNGTPIKEQMIQL 171 (457)
Q Consensus 94 ~~~~~~l~~~~~~~~D~vv~D~~~~~~~--~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 171 (457)
..++.. .++|+|++........ .++...++|++..........
T Consensus 78 ~~~~~~------~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~----------------------------- 122 (374)
T cd03801 78 RRLLRR------ERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGR----------------------------- 122 (374)
T ss_pred HHHhhh------cCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhc-----------------------------
Confidence 344444 7899999997666433 477888999988543332100
Q ss_pred CCCCCCCccccccccccCCcchhhHHHHHHHH-HHHhhhcCcEEEEcCcccccchhhccC---CceeeeCcccCCCCCCC
Q 012744 172 APNMPAISTGELFWTGIGDLTMQKFFFDFMVK-NMRATRAADFQLCNSTYELEGGAFSMI---PELLPIGPLLASNRLGN 247 (457)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~s~~~le~~~~~~~---~~~~~vGpl~~~~~~~~ 247 (457)
.. .. .......... .......++.+++.+....+.-..... .++..+..........
T Consensus 123 ----~~--------~~------~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~- 183 (374)
T cd03801 123 ----PG--------NE------LGLLLKLARALERRALRRADRIIAVSEATREELRELGGVPPEKITVIPNGVDTERFR- 183 (374)
T ss_pred ----cc--------cc------hhHHHHHHHHHHHHHHHhCCEEEEecHHHHHHHHhcCCCCCCcEEEecCcccccccC-
Confidence 00 00 0001111111 222347788899888776554422222 2555555433322111
Q ss_pred CCCCCCCCcchhhHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhh---c--CCcEEEEEcCCCCCCCcCCCchhHH
Q 012744 248 SAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTVLEQNQFQELALGLEI---C--NRSFLWVVRPDITNDANDAYPEGFR 322 (457)
Q Consensus 248 ~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~---~--~~~~i~~~~~~~~~~~~~~~~~~~~ 322 (457)
+.......-. ....+..+++.+|+.. ....+..+++++.. . +.++++...+. ....+.
T Consensus 184 ------~~~~~~~~~~-~~~~~~~~i~~~g~~~--~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~~--------~~~~~~ 246 (374)
T cd03801 184 ------PAPRAARRRL-GIPEDEPVILFVGRLV--PRKGVDLLLEALAKLRKEYPDVRLVIVGDGP--------LREELE 246 (374)
T ss_pred ------ccchHHHhhc-CCcCCCeEEEEecchh--hhcCHHHHHHHHHHHhhhcCCeEEEEEeCcH--------HHHHHH
Confidence 0000000111 1122335667777654 22233444444432 2 24444443221 111121
Q ss_pred H-----HhcCCceeecCCCch---hhccCCCccceeec----cCcchhhhhhhcCCceeccccccchhhhHHhhhhhhce
Q 012744 323 E-----RVAARGQMISWSPQQ---KVLTHPSISCFMSH----CGWNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKV 390 (457)
Q Consensus 323 ~-----~~~~nv~~~~~~pq~---~ll~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~ 390 (457)
+ ....++.+.+++++. .++..+++ +|.- |..+++.||+++|+|+|+.+. ......+.+. +.
T Consensus 247 ~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~-~~ 319 (374)
T cd03801 247 ALAAELGLGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDG-ET 319 (374)
T ss_pred HHHHHhCCCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCC-cc
Confidence 1 135788899999754 58999998 7742 456799999999999998765 3355566653 77
Q ss_pred eEEeeccCCCccCHHHHHHHHHHHhCCHHHHHH
Q 012744 391 GLRLERNQSGIIGREEIKNKVDQVLGDQNFKAR 423 (457)
Q Consensus 391 g~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 423 (457)
|..... .+.+++.++|.++++|++.++.
T Consensus 320 g~~~~~-----~~~~~l~~~i~~~~~~~~~~~~ 347 (374)
T cd03801 320 GLLVPP-----GDPEALAEAILRLLDDPELRRR 347 (374)
T ss_pred eEEeCC-----CCHHHHHHHHHHHHcChHHHHH
Confidence 877742 4689999999999999865443
No 56
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.26 E-value=1.8e-08 Score=95.93 Aligned_cols=317 Identities=14% Similarity=0.096 Sum_probs=167.7
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhH-HHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHHH
Q 012744 5 HVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKR-VLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLLE 83 (457)
Q Consensus 5 ~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (457)
||++++....|+......+++.|.++||+|++++....... ... .+++++.++..... ......+.
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~----~~~~~~~~ 67 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELEA---------LGVKVIPIPLDRRG----INPFKDLK 67 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCccccccc---------CCceEEeccccccc----cChHhHHH
Confidence 47777777789999999999999999999999998765442 221 26777666533211 11111111
Q ss_pred HHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcc--hHHHHHHHcCCceEEEechhhHHHHHHhhhhhhhhccCCCCCC
Q 012744 84 KRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAG--WAIEVAEKMKLRRAVVVITSAATVALTFSIPKLIEDGVINSNG 161 (457)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 161 (457)
.. ..+...++. .+||+|++..... .+..+++..+.|.+..........
T Consensus 68 ~~-----~~~~~~~~~------~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------------- 117 (359)
T cd03808 68 AL-----LRLYRLLRK------ERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFV------------------- 117 (359)
T ss_pred HH-----HHHHHHHHh------cCCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchh-------------------
Confidence 11 123334444 7999998885444 334444435555554322211000
Q ss_pred CCccccccccCCCCCCCccccccccccCCcchhhHHHHHHHHHH-HhhhcCcEEEEcCcccccchhhccC---CceeeeC
Q 012744 162 TPIKEQMIQLAPNMPAISTGELFWTGIGDLTMQKFFFDFMVKNM-RATRAADFQLCNSTYELEGGAFSMI---PELLPIG 237 (457)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~s~~~le~~~~~~~---~~~~~vG 237 (457)
. .. ... ....+.... .....++.+++.+....+.-..... .....+.
T Consensus 118 ---------------~-----~~-~~~--------~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~~~~ 168 (359)
T cd03808 118 ---------------F-----TS-GGL--------KRRLYLLLERLALRFTDKVIFQNEDDRDLALKLGIIKKKKTVLIP 168 (359)
T ss_pred ---------------h-----cc-chh--------HHHHHHHHHHHHHhhccEEEEcCHHHHHHHHHhcCCCcCceEEec
Confidence 0 00 000 001111111 1235668888888765443311111 1222222
Q ss_pred cccCCCCCCCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCccc-CCHHHHHHHHHHHhh--cCCcEEEEEcCCCCCCCc
Q 012744 238 PLLASNRLGNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTV-LEQNQFQELALGLEI--CNRSFLWVVRPDITNDAN 314 (457)
Q Consensus 238 pl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~a~~~--~~~~~i~~~~~~~~~~~~ 314 (457)
|...+.... .+.... ..+++.+++..|+... ...+.+.+.+..+.+ .+.++++...+. .
T Consensus 169 ~~~~~~~~~------~~~~~~-------~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~-----~ 230 (359)
T cd03808 169 GSGVDLDRF------SPSPEP-------IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGD-----E 230 (359)
T ss_pred CCCCChhhc------Cccccc-------cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCC-----c
Confidence 222221110 000000 1233477788887642 233444444444433 234555444432 0
Q ss_pred CCCchhH-HHH--hcCCceeecCCCc-hhhccCCCccceeeccC----cchhhhhhhcCCceeccccccchhhhHHhhhh
Q 012744 315 DAYPEGF-RER--VAARGQMISWSPQ-QKVLTHPSISCFMSHCG----WNSTTEGVSNGVPFLCWPFFADQFMNTTYICD 386 (457)
Q Consensus 315 ~~~~~~~-~~~--~~~nv~~~~~~pq-~~ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~ 386 (457)
....... ... ...++.+.++..+ ..++..+++ +|..+. .+++.||+.+|+|+|+.+... ....+.+
T Consensus 231 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~----~~~~i~~ 304 (359)
T cd03808 231 ENPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVPG----CREAVID 304 (359)
T ss_pred chhhHHHHHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCCC----chhhhhc
Confidence 1000100 111 2356777777544 468999998 776543 578999999999999865443 4455555
Q ss_pred hhceeEEeeccCCCccCHHHHHHHHHHHhCCHHHHHH
Q 012744 387 VWKVGLRLERNQSGIIGREEIKNKVDQVLGDQNFKAR 423 (457)
Q Consensus 387 ~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 423 (457)
. +.|..... -+.+++.++|.+++.|++.+++
T Consensus 305 ~-~~g~~~~~-----~~~~~~~~~i~~l~~~~~~~~~ 335 (359)
T cd03808 305 G-VNGFLVPP-----GDAEALADAIERLIEDPELRAR 335 (359)
T ss_pred C-cceEEECC-----CCHHHHHHHHHHHHhCHHHHHH
Confidence 3 67777642 4789999999999998865443
No 57
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.23 E-value=1.1e-08 Score=100.26 Aligned_cols=76 Identities=14% Similarity=0.150 Sum_probs=57.9
Q ss_pred hhhccCCCccceeec-----cCcchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHH
Q 012744 338 QKVLTHPSISCFMSH-----CGWNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVD 412 (457)
Q Consensus 338 ~~ll~~~~~~~~I~H-----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~ 412 (457)
..+++.+|+ ++.. +|..++.|++++|+|+|+-|...++......+.+. |.++.. -+.++++++|.
T Consensus 314 ~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~~-------~d~~~La~~l~ 383 (425)
T PRK05749 314 GLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQV-------EDAEDLAKAVT 383 (425)
T ss_pred HHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEEE-------CCHHHHHHHHH
Confidence 367888887 5442 33346999999999999999888888777776663 766654 26899999999
Q ss_pred HHhCCHHHHHH
Q 012744 413 QVLGDQNFKAR 423 (457)
Q Consensus 413 ~~l~~~~~~~~ 423 (457)
++++|++.+++
T Consensus 384 ~ll~~~~~~~~ 394 (425)
T PRK05749 384 YLLTDPDARQA 394 (425)
T ss_pred HHhcCHHHHHH
Confidence 99999865443
No 58
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.20 E-value=2.1e-08 Score=96.21 Aligned_cols=112 Identities=12% Similarity=0.112 Sum_probs=72.0
Q ss_pred cCCceeecCCC-ch---hhccCCCccceeeccC----cchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeecc
Q 012744 326 AARGQMISWSP-QQ---KVLTHPSISCFMSHCG----WNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERN 397 (457)
Q Consensus 326 ~~nv~~~~~~p-q~---~ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~ 397 (457)
..++...+|++ +. .++..+++ +|.... .+++.||+++|+|+|+.... .....+.+. +.|..+.
T Consensus 243 ~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~~~~-~~g~~~~-- 313 (365)
T cd03825 243 PFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIVDHG-VTGYLAK-- 313 (365)
T ss_pred CCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCC----CChhheeCC-CceEEeC--
Confidence 46677889998 43 47888998 887543 47999999999999976542 233344442 5676663
Q ss_pred CCCccCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 012744 398 QSGIIGREEIKNKVDQVLGDQNFKARALKLKEKALSSVREGGSSNKAIQNFVQSI 452 (457)
Q Consensus 398 ~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 452 (457)
..+.+++++++.++++|++.+++ +++..++...+.-+.....+++++-+
T Consensus 314 ---~~~~~~~~~~l~~l~~~~~~~~~---~~~~~~~~~~~~~s~~~~~~~~~~~y 362 (365)
T cd03825 314 ---PGDPEDLAEGIEWLLADPDEREE---LGEAARELAENEFDSRVQAKRYLSLY 362 (365)
T ss_pred ---CCCHHHHHHHHHHHHhCHHHHHH---HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 24789999999999998863322 22222222222345445555555443
No 59
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.16 E-value=1e-07 Score=91.20 Aligned_cols=314 Identities=16% Similarity=0.058 Sum_probs=162.6
Q ss_pred CCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCC-CCcchHHHHHHHHHHhcch
Q 012744 13 EQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPW-DDRSDMRKLLEKRLQVMPG 91 (457)
Q Consensus 13 ~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 91 (457)
..|+...+..+++.|.+.||+|++++............. .............. .......... .....
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 81 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLK-------GRLVGVERLPVLLPVVPLLKGPLLY----LLAAR 81 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcc-------cccccccccccCcchhhccccchhH----HHHHH
Confidence 368889999999999999999999998665433222100 00000000000000 0000000000 11111
Q ss_pred HHHHHHHHHhcCCCCCeeEEEecCCcc---hHHHHHHHcCCceEEEechhhHHHHHHhhhhhhhhccCCCCCCCCccccc
Q 012744 92 KLEGLIEEIHGREGEKTACLIADGAAG---WAIEVAEKMKLRRAVVVITSAATVALTFSIPKLIEDGVINSNGTPIKEQM 168 (457)
Q Consensus 92 ~~~~~~~~l~~~~~~~~D~vv~D~~~~---~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 168 (457)
.+..++.. .. .++|+|++..... .+..+++..++|++.........
T Consensus 82 ~~~~~l~~-~~---~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~--------------------------- 130 (377)
T cd03798 82 ALLKLLKL-KR---FRPDLIHAHFAYPDGFAAALLKRKLGIPLVVTLHGSDVN--------------------------- 130 (377)
T ss_pred HHHHHHhc-cc---CCCCEEEEeccchHHHHHHHHHHhcCCCEEEEeecchhc---------------------------
Confidence 23333331 02 8999999885443 34556677788988754332210
Q ss_pred cccCCCCCCCccccccccccCCcchhhHHHHHHHHHHHhhhcCcEEEEcCcccccchhhc--cCCceeeeCcccCCCCCC
Q 012744 169 IQLAPNMPAISTGELFWTGIGDLTMQKFFFDFMVKNMRATRAADFQLCNSTYELEGGAFS--MIPELLPIGPLLASNRLG 246 (457)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~--~~~~~~~vGpl~~~~~~~ 246 (457)
. .. .. . ..... .......++.+++.+....+.-... ...++..++.........
T Consensus 131 --------~-----~~-~~----~---~~~~~---~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 186 (377)
T cd03798 131 --------L-----LP-RK----R---LLRAL---LRRALRRADAVIAVSEALADELKALGIDPEKVTVIPNGVDTERFS 186 (377)
T ss_pred --------c-----cC-ch----h---hHHHH---HHHHHhcCCeEEeCCHHHHHHHHHhcCCCCceEEcCCCcCcccCC
Confidence 0 00 00 0 00011 1123467788888887655543111 223455555444332211
Q ss_pred CCCCCCCCCcchhhHHhccCCCCeEEEEEeCCccc-CCHHHHHHHHHHHhhc--CCcEEEEEcCCCCCCCcCCCchhHHH
Q 012744 247 NSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTV-LEQNQFQELALGLEIC--NRSFLWVVRPDITNDANDAYPEGFRE 323 (457)
Q Consensus 247 ~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~ 323 (457)
+....-...+.. ..+..+++..|+... ...+.+-.+++.+... +..+++...+. ..+.+.+
T Consensus 187 -------~~~~~~~~~~~~-~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~--------~~~~~~~ 250 (377)
T cd03798 187 -------PADRAEARKLGL-PEDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGP--------LREALEA 250 (377)
T ss_pred -------CcchHHHHhccC-CCCceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCc--------chHHHHH
Confidence 010000000111 223467777787643 2233333444444333 23333332221 1112222
Q ss_pred H-----hcCCceeecCCCch---hhccCCCccceeec----cCcchhhhhhhcCCceeccccccchhhhHHhhhhhhcee
Q 012744 324 R-----VAARGQMISWSPQQ---KVLTHPSISCFMSH----CGWNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVG 391 (457)
Q Consensus 324 ~-----~~~nv~~~~~~pq~---~ll~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g 391 (457)
. ...|+.+.+++++. .++..+++ +|.. |..+++.||+++|+|+|+.+... ....+.+ .+.|
T Consensus 251 ~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~----~~~~~~~-~~~g 323 (377)
T cd03798 251 LAAELGLEDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVGG----IPEIITD-GENG 323 (377)
T ss_pred HHHhcCCcceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCCC----hHHHhcC-Ccce
Confidence 1 24688889999875 57888888 6633 45678999999999999866543 4455566 3667
Q ss_pred EEeeccCCCccCHHHHHHHHHHHhCCHHH
Q 012744 392 LRLERNQSGIIGREEIKNKVDQVLGDQNF 420 (457)
Q Consensus 392 ~~l~~~~~~~~~~~~l~~~i~~~l~~~~~ 420 (457)
.... .-+.+++.++|.++++++..
T Consensus 324 ~~~~-----~~~~~~l~~~i~~~~~~~~~ 347 (377)
T cd03798 324 LLVP-----PGDPEALAEAILRLLADPWL 347 (377)
T ss_pred eEEC-----CCCHHHHHHHHHHHhcCcHH
Confidence 7664 35889999999999998874
No 60
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.15 E-value=7.9e-08 Score=90.96 Aligned_cols=187 Identities=13% Similarity=0.075 Sum_probs=104.3
Q ss_pred hhcCcEEEEcCcccccchhhccCCceeeeCcccCCCCCCCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCccc-CCHHH
Q 012744 208 TRAADFQLCNSTYELEGGAFSMIPELLPIGPLLASNRLGNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTV-LEQNQ 286 (457)
Q Consensus 208 ~~~~~~~l~~s~~~le~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~-~~~~~ 286 (457)
...++.+++.+.............++..+++........ . ....+..+++..|+... ...+.
T Consensus 133 ~~~~d~ii~~s~~~~~~~~~~~~~~~~vi~~~~~~~~~~-------~----------~~~~~~~~i~~~g~~~~~K~~~~ 195 (348)
T cd03820 133 YRRADAVVVLTEEDRALYYKKFNKNVVVIPNPLPFPPEE-------P----------SSDLKSKRILAVGRLVPQKGFDL 195 (348)
T ss_pred HhcCCEEEEeCHHHHHHhhccCCCCeEEecCCcChhhcc-------c----------cCCCCCcEEEEEEeeccccCHHH
Confidence 467888888887763211122334566665444332211 0 01122345666676533 22333
Q ss_pred HHHHHHHHhhc--CCcEEEEEcCCCCCCCcCCCchhHH---HH--hcCCceeecCCCc-hhhccCCCccceeeccC----
Q 012744 287 FQELALGLEIC--NRSFLWVVRPDITNDANDAYPEGFR---ER--VAARGQMISWSPQ-QKVLTHPSISCFMSHCG---- 354 (457)
Q Consensus 287 ~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~---~~--~~~nv~~~~~~pq-~~ll~~~~~~~~I~HgG---- 354 (457)
+..+++.+.+. +.++++...+. ..+.+. ++ ...++.+.++... ..++..+++ +|....
T Consensus 196 l~~~~~~l~~~~~~~~l~i~G~~~--------~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~ 265 (348)
T cd03820 196 LIEAWAKIAKKHPDWKLRIVGDGP--------EREALEALIKELGLEDRVILLGFTKNIEEYYAKASI--FVLTSRFEGF 265 (348)
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCC--------CHHHHHHHHHHcCCCCeEEEcCCcchHHHHHHhCCE--EEeCcccccc
Confidence 44444444322 34444444322 112221 11 2356666666333 468989998 776652
Q ss_pred cchhhhhhhcCCceeccccccchhhhHHhhhhhhc-eeEEeeccCCCccCHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 012744 355 WNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWK-VGLRLERNQSGIIGREEIKNKVDQVLGDQNFKARALKLKEKA 431 (457)
Q Consensus 355 ~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG-~g~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~ 431 (457)
-+++.||+++|+|+|+.+....+. .+.+. | .|...+ .-+.++++++|.++++|++.+++..+-+..+
T Consensus 266 ~~~~~Ea~a~G~Pvi~~~~~~~~~----~~~~~-~~~g~~~~-----~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~ 333 (348)
T cd03820 266 PMVLLEAMAFGLPVISFDCPTGPS----EIIED-GVNGLLVP-----NGDVEALAEALLRLMEDEELRKRMGANARES 333 (348)
T ss_pred CHHHHHHHHcCCCEEEecCCCchH----hhhcc-CcceEEeC-----CCCHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 468999999999999876544332 23332 4 777774 2468999999999999997665555444333
No 61
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.14 E-value=6.4e-08 Score=94.61 Aligned_cols=161 Identities=10% Similarity=0.102 Sum_probs=90.3
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHhhc----CCcEEEEEcCCCCCCCcCCCchhHHHH----hcCCceeecCCCch---h
Q 012744 271 VIYVAFGSHTVLEQNQFQELALGLEIC----NRSFLWVVRPDITNDANDAYPEGFRER----VAARGQMISWSPQQ---K 339 (457)
Q Consensus 271 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~nv~~~~~~pq~---~ 339 (457)
.+++..|+.. ..+.+..+++++... +.+++++..+. ..+.+.+. -.+|+.+.+|+|+. +
T Consensus 230 ~~i~~~G~l~--~~kg~~~li~a~~~l~~~~~~~l~ivG~g~--------~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~ 299 (412)
T PRK10307 230 KIVLYSGNIG--EKQGLELVIDAARRLRDRPDLIFVICGQGG--------GKARLEKMAQCRGLPNVHFLPLQPYDRLPA 299 (412)
T ss_pred EEEEEcCccc--cccCHHHHHHHHHHhccCCCeEEEEECCCh--------hHHHHHHHHHHcCCCceEEeCCCCHHHHHH
Confidence 5666678764 233344555555432 23444333222 22223221 12578888999875 4
Q ss_pred hccCCCccceeeccCc------chhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHH
Q 012744 340 VLTHPSISCFMSHCGW------NSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQ 413 (457)
Q Consensus 340 ll~~~~~~~~I~HgG~------~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ 413 (457)
++..+|+..+.+..+. +.+.|++.+|+|+|+....... .... .+ +.|+.++. -+.++++++|.+
T Consensus 300 ~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~-i~--~~G~~~~~-----~d~~~la~~i~~ 369 (412)
T PRK10307 300 LLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQL-VE--GIGVCVEP-----ESVEALVAAIAA 369 (412)
T ss_pred HHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHH-Hh--CCcEEeCC-----CCHHHHHHHHHH
Confidence 7889998444444332 2368999999999997643211 1122 22 56776642 478999999999
Q ss_pred HhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhc
Q 012744 414 VLGDQNFKARALKLKEKALSSVREGGSSNKAIQNFVQSIKQ 454 (457)
Q Consensus 414 ~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 454 (457)
+++|+..+++ +++..++..++.-+....++++++.+.+
T Consensus 370 l~~~~~~~~~---~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 407 (412)
T PRK10307 370 LARQALLRPK---LGTVAREYAERTLDKENVLRQFIADIRG 407 (412)
T ss_pred HHhCHHHHHH---HHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 9988754332 3333333332344555555555555443
No 62
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.11 E-value=1.3e-07 Score=90.44 Aligned_cols=130 Identities=11% Similarity=0.116 Sum_probs=84.3
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHhhcC-CcEEEEEcCCCCCCCcCCCchhHHH-----HhcCCceeecCCCch---hhc
Q 012744 271 VIYVAFGSHTVLEQNQFQELALGLEICN-RSFLWVVRPDITNDANDAYPEGFRE-----RVAARGQMISWSPQQ---KVL 341 (457)
Q Consensus 271 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~nv~~~~~~pq~---~ll 341 (457)
.+++..|+.. ....+..+++++.... .++++...+. ....+.+ ....||.+.+|+|+. .++
T Consensus 192 ~~i~~~G~~~--~~K~~~~li~a~~~l~~~~l~i~G~g~--------~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~ 261 (357)
T cd03795 192 PFFLFVGRLV--YYKGLDVLLEAAAALPDAPLVIVGEGP--------LEAELEALAAALGLLDRVRFLGRLDDEEKAALL 261 (357)
T ss_pred cEEEEecccc--cccCHHHHHHHHHhccCcEEEEEeCCh--------hHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHH
Confidence 5667777753 2334556777776665 5555554332 1122222 134789999999975 588
Q ss_pred cCCCcccee--e---ccCc-chhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHh
Q 012744 342 THPSISCFM--S---HCGW-NSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVL 415 (457)
Q Consensus 342 ~~~~~~~~I--~---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l 415 (457)
..+++ +| + +.|. .++.||+++|+|+|+............ +. +.|..... -+.++++++|..++
T Consensus 262 ~~ad~--~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~~-~~g~~~~~-----~d~~~~~~~i~~l~ 330 (357)
T cd03795 262 AACDV--FVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL---HG-VTGLVVPP-----GDPAALAEAIRRLL 330 (357)
T ss_pred HhCCE--EEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh---CC-CceEEeCC-----CCHHHHHHHHHHHH
Confidence 88998 55 3 2343 479999999999998765544332221 23 67776642 47899999999999
Q ss_pred CCHHHH
Q 012744 416 GDQNFK 421 (457)
Q Consensus 416 ~~~~~~ 421 (457)
+|++.+
T Consensus 331 ~~~~~~ 336 (357)
T cd03795 331 EDPELR 336 (357)
T ss_pred HCHHHH
Confidence 998543
No 63
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.10 E-value=1.3e-07 Score=91.90 Aligned_cols=83 Identities=12% Similarity=0.101 Sum_probs=60.7
Q ss_pred cCCceeecCCCch---hhccCCCccceeeccC----cchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccC
Q 012744 326 AARGQMISWSPQQ---KVLTHPSISCFMSHCG----WNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQ 398 (457)
Q Consensus 326 ~~nv~~~~~~pq~---~ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~ 398 (457)
.++|.+.+++|+. .++..+++ ++.... -.++.||+++|+|+|+.-... ....+.+. +.|....
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~----~~e~i~~~-~~g~~~~--- 348 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSGG----PLETVVDG-ETGFLCE--- 348 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCCC----cHHHhccC-CceEEeC---
Confidence 4688899999976 57888888 774322 257899999999999874432 33445553 5676663
Q ss_pred CCccCHHHHHHHHHHHhCCHHHH
Q 012744 399 SGIIGREEIKNKVDQVLGDQNFK 421 (457)
Q Consensus 399 ~~~~~~~~l~~~i~~~l~~~~~~ 421 (457)
.+.++++++|.++++|++.+
T Consensus 349 ---~~~~~~a~~i~~l~~~~~~~ 368 (392)
T cd03805 349 ---PTPEEFAEAMLKLANDPDLA 368 (392)
T ss_pred ---CCHHHHHHHHHHHHhChHHH
Confidence 27899999999999988543
No 64
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.08 E-value=5.9e-07 Score=87.61 Aligned_cols=86 Identities=15% Similarity=0.169 Sum_probs=63.4
Q ss_pred cCCceeecCCCch---hhccCCCccceeec---cC-cchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccC
Q 012744 326 AARGQMISWSPQQ---KVLTHPSISCFMSH---CG-WNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQ 398 (457)
Q Consensus 326 ~~nv~~~~~~pq~---~ll~~~~~~~~I~H---gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~ 398 (457)
.++|.+.+++++. ++|..+++ +|.. .| -.++.||+++|+|+|+.... .....+.+. +.|..++.
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i~~~-~~g~~~~~-- 352 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAVADG-ETGLLVDG-- 352 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhhccC-CceEECCC--
Confidence 3678889999865 58999998 7742 23 35899999999999986543 344455553 67777642
Q ss_pred CCccCHHHHHHHHHHHhCCHHHHHH
Q 012744 399 SGIIGREEIKNKVDQVLGDQNFKAR 423 (457)
Q Consensus 399 ~~~~~~~~l~~~i~~~l~~~~~~~~ 423 (457)
-+.++++++|.++++|++.+++
T Consensus 353 ---~d~~~la~~i~~~l~~~~~~~~ 374 (405)
T TIGR03449 353 ---HDPADWADALARLLDDPRTRIR 374 (405)
T ss_pred ---CCHHHHHHHHHHHHhCHHHHHH
Confidence 4789999999999998754443
No 65
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.07 E-value=2e-07 Score=86.45 Aligned_cols=299 Identities=16% Similarity=0.114 Sum_probs=158.9
Q ss_pred CEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcc--hhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHH
Q 012744 4 PHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYN--HKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKL 81 (457)
Q Consensus 4 ~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (457)
|||.|-- ....|+.-+..++++|.++||+|.+.+-... .+.+..+ |+++..+.... .+....
T Consensus 1 MkIwiDi-~~p~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~y---------g~~y~~iG~~g------~~~~~K 64 (335)
T PF04007_consen 1 MKIWIDI-THPAHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLY---------GIDYIVIGKHG------DSLYGK 64 (335)
T ss_pred CeEEEEC-CCchHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHc---------CCCeEEEcCCC------CCHHHH
Confidence 4554422 2223999999999999999999999886443 3444544 78888775322 111222
Q ss_pred HHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEEEechhhHHHHHHhhhhhhhhccCCCCCC
Q 012744 82 LEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAVVVITSAATVALTFSIPKLIEDGVINSNG 161 (457)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 161 (457)
+.... ....++++.+++ .+||++|+- .+..+..+|..+|+|+|.+.-.........
T Consensus 65 l~~~~----~R~~~l~~~~~~---~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~~~~---------------- 120 (335)
T PF04007_consen 65 LLESI----ERQYKLLKLIKK---FKPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIAQNR---------------- 120 (335)
T ss_pred HHHHH----HHHHHHHHHHHh---hCCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhccce----------------
Confidence 22221 223344444444 899999975 566888899999999999876543210000
Q ss_pred CCccccccccCCCCCCCccccccccccCCcc-hhhHHHHHHHHHHHhhhcCcEEE-EcCcccccchhhccCCceeeeCcc
Q 012744 162 TPIKEQMIQLAPNMPAISTGELFWTGIGDLT-MQKFFFDFMVKNMRATRAADFQL-CNSTYELEGGAFSMIPELLPIGPL 239 (457)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l-~~s~~~le~~~~~~~~~~~~vGpl 239 (457)
..+++.+ .+..+. ........+ -.+ .-+. .++..++ .++=|+
T Consensus 121 --------------Lt~Pla~----~i~~P~~~~~~~~~~~------G~~-~~i~~y~G~~E~-----------ayl~~F 164 (335)
T PF04007_consen 121 --------------LTLPLAD----VIITPEAIPKEFLKRF------GAK-NQIRTYNGYKEL-----------AYLHPF 164 (335)
T ss_pred --------------eehhcCC----eeECCcccCHHHHHhc------CCc-CCEEEECCeeeE-----------EeecCC
Confidence 0000000 000000 000000000 001 1121 3333222 122221
Q ss_pred cCCCCCCCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCccc----CCHHHHHHHHHHHhhcCCcEEEEEcCCCCCCCcC
Q 012744 240 LASNRLGNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTV----LEQNQFQELALGLEICNRSFLWVVRPDITNDAND 315 (457)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~----~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~ 315 (457)
..|+++.+-+.. ++.+.|++-+.+... .....+..+++.+++.+..+|+.....
T Consensus 165 --------------~Pd~~vl~~lg~-~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~------- 222 (335)
T PF04007_consen 165 --------------KPDPEVLKELGL-DDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYE------- 222 (335)
T ss_pred --------------CCChhHHHHcCC-CCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCc-------
Confidence 223333333432 245688888776421 234557788999988887744443322
Q ss_pred CCchhHHHHhcCCceee-cCCCchhhccCCCccceeeccCcchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEe
Q 012744 316 AYPEGFRERVAARGQMI-SWSPQQKVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRL 394 (457)
Q Consensus 316 ~~~~~~~~~~~~nv~~~-~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l 394 (457)
..++ ..++. ++.+. .-+.-.+||.++++ +|+=|| ....||...|+|.|.+ +-.+-...-+.+.+. |+-.+.
T Consensus 223 ~~~~-~~~~~--~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~-Gll~~~ 294 (335)
T PF04007_consen 223 DQRE-LFEKY--GVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEK-GLLYHS 294 (335)
T ss_pred chhh-HHhcc--CccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHC-CCeEec
Confidence 1111 11111 23333 44555589999999 999877 7889999999999974 212211122345553 653322
Q ss_pred eccCCCccCHHHHHHHHHHHh
Q 012744 395 ERNQSGIIGREEIKNKVDQVL 415 (457)
Q Consensus 395 ~~~~~~~~~~~~l~~~i~~~l 415 (457)
.+.+++.+.+...+
T Consensus 295 -------~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 295 -------TDPDEIVEYVRKNL 308 (335)
T ss_pred -------CCHHHHHHHHHHhh
Confidence 46777777555544
No 66
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.06 E-value=4.7e-07 Score=86.69 Aligned_cols=84 Identities=11% Similarity=0.043 Sum_probs=60.3
Q ss_pred cCCceeecCCCch---hhccCCCccceeeccC----cchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccC
Q 012744 326 AARGQMISWSPQQ---KVLTHPSISCFMSHCG----WNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQ 398 (457)
Q Consensus 326 ~~nv~~~~~~pq~---~ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~ 398 (457)
.+++.+.+|+++. .++..+++ +|...- .+++.||+++|+|+|+.+.. .....+.. +.|....
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~~----~~~~~~~~--~~~~~~~--- 329 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDKV----PWQELIEY--GCGWVVD--- 329 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCCC----CHHHHhhc--CceEEeC---
Confidence 4788888999965 46888888 665432 46899999999999987543 23334333 6676664
Q ss_pred CCccCHHHHHHHHHHHhCCHHHHHH
Q 012744 399 SGIIGREEIKNKVDQVLGDQNFKAR 423 (457)
Q Consensus 399 ~~~~~~~~l~~~i~~~l~~~~~~~~ 423 (457)
.+.+++.++|.++++|++.+++
T Consensus 330 ---~~~~~~~~~i~~l~~~~~~~~~ 351 (375)
T cd03821 330 ---DDVDALAAALRRALELPQRLKA 351 (375)
T ss_pred ---CChHHHHHHHHHHHhCHHHHHH
Confidence 2449999999999999754433
No 67
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.06 E-value=2.2e-08 Score=96.09 Aligned_cols=155 Identities=11% Similarity=0.162 Sum_probs=92.0
Q ss_pred eEEEEEeCCcccCCHHHHHHHHHHHhhc-----CCcEEEEEcCCCCCCCcCCCchhHHHH--hcCCceeecCCCch---h
Q 012744 270 SVIYVAFGSHTVLEQNQFQELALGLEIC-----NRSFLWVVRPDITNDANDAYPEGFRER--VAARGQMISWSPQQ---K 339 (457)
Q Consensus 270 ~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~nv~~~~~~pq~---~ 339 (457)
+.|+++.+-.... .+.+..+++++... +.++++...+. ......+.+. ..+++.+.+.+++. .
T Consensus 198 ~~vl~~~hr~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 270 (365)
T TIGR00236 198 RYILLTLHRRENV-GEPLENIFKAIREIVEEFEDVQIVYPVHLN------PVVREPLHKHLGDSKRVHLIEPLEYLDFLN 270 (365)
T ss_pred CEEEEecCchhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECCCC------hHHHHHHHHHhCCCCCEEEECCCChHHHHH
Confidence 4666655432111 13466677776543 34555554332 1111112222 23578888766653 5
Q ss_pred hccCCCccceeeccCcchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCCHH
Q 012744 340 VLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGDQN 419 (457)
Q Consensus 340 ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~~~ 419 (457)
++..+++ +|+-.|.. +.||+++|+|+|+++...+++. +.+. |.+..+. .+.++|.+++.++++|+.
T Consensus 271 ~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~~-g~~~lv~------~d~~~i~~ai~~ll~~~~ 336 (365)
T TIGR00236 271 LAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVEA-GTNKLVG------TDKENITKAAKRLLTDPD 336 (365)
T ss_pred HHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH----HHhc-CceEEeC------CCHHHHHHHHHHHHhChH
Confidence 7788888 99977654 7999999999999876555442 2332 7766553 378999999999999887
Q ss_pred HHHHHHHHHHHHHhhhhcCCChHHHHHHHH
Q 012744 420 FKARALKLKEKALSSVREGGSSNKAIQNFV 449 (457)
Q Consensus 420 ~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 449 (457)
.+++...-. .. ..+++++.+-++.+.
T Consensus 337 ~~~~~~~~~---~~-~g~~~a~~ri~~~l~ 362 (365)
T TIGR00236 337 EYKKMSNAS---NP-YGDGEASERIVEELL 362 (365)
T ss_pred HHHHhhhcC---CC-CcCchHHHHHHHHHH
Confidence 666544322 21 223455544444443
No 68
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.98 E-value=1.3e-08 Score=97.81 Aligned_cols=134 Identities=16% Similarity=0.118 Sum_probs=86.6
Q ss_pred CeEEEEEeCCcccC-CHHHHHHHHHHHhhcCCc-EEEEEcCCCCCCCcCCCchhHHH---Hh---cCCceeecCCCch--
Q 012744 269 NSVIYVAFGSHTVL-EQNQFQELALGLEICNRS-FLWVVRPDITNDANDAYPEGFRE---RV---AARGQMISWSPQQ-- 338 (457)
Q Consensus 269 ~~~v~vs~Gs~~~~-~~~~~~~~~~a~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~---~~---~~nv~~~~~~pq~-- 338 (457)
++.|++++|..... ..+.+..+++++.....+ +.++..+. ....+.+.+ +. .+++.+.+..++.
T Consensus 198 ~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~------~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~ 271 (363)
T cd03786 198 KKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNH------PRTRPRIREAGLEFLGHHPNVLLISPLGYLYF 271 (363)
T ss_pred CCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECC------CChHHHHHHHHHhhccCCCCEEEECCcCHHHH
Confidence 45788888875433 356677788888665332 44444332 111122222 11 3677777766544
Q ss_pred -hhccCCCccceeeccCcchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCC
Q 012744 339 -KVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGD 417 (457)
Q Consensus 339 -~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~ 417 (457)
.++..+++ +|+..| |.+.|++++|+|+|+++.. |. +..+.+ -|++..+. -+.++|.++|.+++++
T Consensus 272 ~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~-~g~~~~~~------~~~~~i~~~i~~ll~~ 337 (363)
T cd03786 272 LLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVE-SGTNVLVG------TDPEAILAAIEKLLSD 337 (363)
T ss_pred HHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhh-eeeEEecC------CCHHHHHHHHHHHhcC
Confidence 57888999 999999 7888999999999998743 22 323344 37766552 1589999999999988
Q ss_pred HHHHH
Q 012744 418 QNFKA 422 (457)
Q Consensus 418 ~~~~~ 422 (457)
+..++
T Consensus 338 ~~~~~ 342 (363)
T cd03786 338 EFAYS 342 (363)
T ss_pred chhhh
Confidence 75443
No 69
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.98 E-value=9e-07 Score=86.08 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=56.1
Q ss_pred cCCceeecCCCch---hhccCCCccceeec---cCc-chhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccC
Q 012744 326 AARGQMISWSPQQ---KVLTHPSISCFMSH---CGW-NSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQ 398 (457)
Q Consensus 326 ~~nv~~~~~~pq~---~ll~~~~~~~~I~H---gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~ 398 (457)
.+++.+.+|+|+. .+++.+++ +|.- -|. .++.||+++|+|+|+.+... ....+.+ |.+...
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~~--~~~~~~---- 316 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLPP--DMILLA---- 316 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhheeC--Cceeec----
Confidence 4668888999864 58888998 7643 243 39999999999999877643 3334433 433222
Q ss_pred CCccCHHHHHHHHHHHhCCH
Q 012744 399 SGIIGREEIKNKVDQVLGDQ 418 (457)
Q Consensus 399 ~~~~~~~~l~~~i~~~l~~~ 418 (457)
. .+.+++++++.+++++.
T Consensus 317 -~-~~~~~l~~~l~~~l~~~ 334 (398)
T cd03796 317 -E-PDVESIVRKLEEAISIL 334 (398)
T ss_pred -C-CCHHHHHHHHHHHHhCh
Confidence 1 27899999999999864
No 70
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.98 E-value=3.8e-07 Score=87.64 Aligned_cols=85 Identities=16% Similarity=0.219 Sum_probs=64.7
Q ss_pred cCCceeecCCCch---hhccCCCccceeecc----------CcchhhhhhhcCCceeccccccchhhhHHhhhhhhceeE
Q 012744 326 AARGQMISWSPQQ---KVLTHPSISCFMSHC----------GWNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGL 392 (457)
Q Consensus 326 ~~nv~~~~~~pq~---~ll~~~~~~~~I~Hg----------G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~ 392 (457)
..++.+.+++|+. .++..+++ +|... -.+++.||+++|+|+|+.+... ++..+.+. +.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~----~~e~i~~~-~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGG----IPEAVEDG-ETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCC----chhheecC-CeeE
Confidence 5678888999875 46888998 76432 2578999999999999876643 56666664 7888
Q ss_pred EeeccCCCccCHHHHHHHHHHHhCCHHHHH
Q 012744 393 RLERNQSGIIGREEIKNKVDQVLGDQNFKA 422 (457)
Q Consensus 393 ~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 422 (457)
.++ .-+.+++.++|.++++|++.++
T Consensus 317 ~~~-----~~d~~~l~~~i~~l~~~~~~~~ 341 (367)
T cd05844 317 LVP-----EGDVAALAAALGRLLADPDLRA 341 (367)
T ss_pred EEC-----CCCHHHHHHHHHHHHcCHHHHH
Confidence 774 2478999999999999886433
No 71
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.97 E-value=3.3e-07 Score=86.85 Aligned_cols=318 Identities=14% Similarity=0.064 Sum_probs=163.0
Q ss_pred EEEEEcCC--CCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHH
Q 012744 5 HVVVIPNP--EQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLL 82 (457)
Q Consensus 5 ~vl~~~~~--~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (457)
||++++.. ..|+-..+..++++|.+.||+|++++............ ............ . .. ....
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~-------~~~~~~~~~~~~--~-~~---~~~~ 67 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLP-------SNVKLIPVRVLK--L-KS---LRDL 67 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccc-------cchhhhceeeee--c-cc---ccch
Confidence 45565544 56888899999999999999999999766433221110 000000000000 0 00 0000
Q ss_pred HHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCC-cc-hHHHHHHHcCCceEEEechhhHHHHHHhhhhhhhhccCCCCC
Q 012744 83 EKRLQVMPGKLEGLIEEIHGREGEKTACLIADGA-AG-WAIEVAEKMKLRRAVVVITSAATVALTFSIPKLIEDGVINSN 160 (457)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~-~~-~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 160 (457)
.....+..++.. .+||+|++... .. ....++...++|++............
T Consensus 68 -----~~~~~~~~~~~~------~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------------- 120 (353)
T cd03811 68 -----LAILRLRRLLRK------EKPDVVISHLTTTPNVLALLAARLGTKLIVWEHNSLSLELK---------------- 120 (353)
T ss_pred -----hHHHHHHHHHHh------cCCCEEEEcCccchhHHHHHHhhcCCceEEEEcCcchhhhc----------------
Confidence 001234444444 78999999975 22 33334444478888854333211000
Q ss_pred CCCccccccccCCCCCCCccccccccccCCcchhhHHHHHHHHHHHhhhcCcEEEEcCcccccchhhccC---CceeeeC
Q 012744 161 GTPIKEQMIQLAPNMPAISTGELFWTGIGDLTMQKFFFDFMVKNMRATRAADFQLCNSTYELEGGAFSMI---PELLPIG 237 (457)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~---~~~~~vG 237 (457)
... . .. .........++.+++.+....+.-..... .++..+.
T Consensus 121 ---------------------~~~-~----------~~---~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~vi~ 165 (353)
T cd03811 121 ---------------------RKL-R----------LL---LLIRKLYRRADKIVAVSEGVKEDLLKLLGIPPDKIEVIY 165 (353)
T ss_pred ---------------------cch-h----------HH---HHHHhhccccceEEEeccchhhhHHHhhcCCccccEEec
Confidence 000 0 00 11122346777888877765443312222 3455555
Q ss_pred cccCCCCCCCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCccc-CCHHHHHHHHHHHhhc--CCcEEEEEcCCCCCCCc
Q 012744 238 PLLASNRLGNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTV-LEQNQFQELALGLEIC--NRSFLWVVRPDITNDAN 314 (457)
Q Consensus 238 pl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~ 314 (457)
+........ +.... .......++..+++..|+... ...+.+...+..+... +.+++++..+.
T Consensus 166 ~~~~~~~~~-------~~~~~--~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~------ 230 (353)
T cd03811 166 NPIDIEEIR-------ALAEE--PLELGIPPDGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVILGDGP------ 230 (353)
T ss_pred CCcChhhcC-------cccch--hhhcCCCCCceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEEcCCc------
Confidence 443322111 00000 000011223467777787642 1223333333444332 34554443322
Q ss_pred CCCchh---HHHH--hcCCceeecCCCch-hhccCCCccceeec----cCcchhhhhhhcCCceeccccccchhhhHHhh
Q 012744 315 DAYPEG---FRER--VAARGQMISWSPQQ-KVLTHPSISCFMSH----CGWNSTTEGVSNGVPFLCWPFFADQFMNTTYI 384 (457)
Q Consensus 315 ~~~~~~---~~~~--~~~nv~~~~~~pq~-~ll~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v 384 (457)
..+. ..++ ...++.+.++.+.. +++..+++ +|.- |.-+++.||+++|+|+|+.... .....+
T Consensus 231 --~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i 302 (353)
T cd03811 231 --LREELEALAKELGLADRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREIL 302 (353)
T ss_pred --cHHHHHHHHHhcCCCccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHh
Confidence 1111 2222 24677788887753 78999998 7743 3356899999999999986544 455666
Q ss_pred hhhhceeEEeeccCCCccCHHHH---HHHHHHHhCCHHHHHHHHH
Q 012744 385 CDVWKVGLRLERNQSGIIGREEI---KNKVDQVLGDQNFKARALK 426 (457)
Q Consensus 385 ~~~lG~g~~l~~~~~~~~~~~~l---~~~i~~~l~~~~~~~~a~~ 426 (457)
.+. +.|...+. -+.+.+ .+++..+..++..+++.++
T Consensus 303 ~~~-~~g~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 341 (353)
T cd03811 303 EDG-ENGLLVPV-----GDEAALAAAALALLDLLLDPELRERLAA 341 (353)
T ss_pred cCC-CceEEECC-----CCHHHHHHHHHHHHhccCChHHHHHHHH
Confidence 664 77887743 356666 6777777777654444333
No 72
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.93 E-value=1.3e-06 Score=83.34 Aligned_cols=134 Identities=13% Similarity=0.106 Sum_probs=81.4
Q ss_pred eEEEEEeCCccc-CCHHHHHHHHHHHhhc--CCcEEEEEcCCCCCCCcCCCchhHHHH--hcCCceeecCCCch---hhc
Q 012744 270 SVIYVAFGSHTV-LEQNQFQELALGLEIC--NRSFLWVVRPDITNDANDAYPEGFRER--VAARGQMISWSPQQ---KVL 341 (457)
Q Consensus 270 ~~v~vs~Gs~~~-~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~nv~~~~~~pq~---~ll 341 (457)
+.+++.+|+... ...+.+...+..+... +..++++..+. ....-..+.++ .++|+.+.+++|+. .++
T Consensus 179 ~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~ 253 (355)
T cd03799 179 PLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDGP-----LRDELEALIAELGLEDRVTLLGAKSQEEVRELL 253 (355)
T ss_pred CeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECCc-----cHHHHHHHHHHcCCCCeEEECCcCChHHHHHHH
Confidence 356667776532 2233344444444333 34444444332 00000112222 34788899999865 588
Q ss_pred cCCCccceeec----------cCcchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHH
Q 012744 342 THPSISCFMSH----------CGWNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKV 411 (457)
Q Consensus 342 ~~~~~~~~I~H----------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i 411 (457)
..+++ +|.. |.-+++.||+++|+|+|+.+... ....+.+. ..|..... -+.+++.++|
T Consensus 254 ~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~~-~~g~~~~~-----~~~~~l~~~i 321 (355)
T cd03799 254 RAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVEDG-ETGLLVPP-----GDPEALADAI 321 (355)
T ss_pred HhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhCC-CceEEeCC-----CCHHHHHHHH
Confidence 88998 6662 33478999999999999876532 33344442 47877742 3889999999
Q ss_pred HHHhCCHHH
Q 012744 412 DQVLGDQNF 420 (457)
Q Consensus 412 ~~~l~~~~~ 420 (457)
.++++|+..
T Consensus 322 ~~~~~~~~~ 330 (355)
T cd03799 322 ERLLDDPEL 330 (355)
T ss_pred HHHHhCHHH
Confidence 999998854
No 73
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.92 E-value=1.7e-06 Score=90.51 Aligned_cols=362 Identities=12% Similarity=0.104 Sum_probs=182.0
Q ss_pred CcChHHHHHHHHHHHhCC--CeEEEEeCCcchhHHHhh-h--------------cCCCCCCCCeEEEecCCCCCCCC-Cc
Q 012744 14 QGHVIPLLELSQNLAKHG--LRITFVNSEYNHKRVLES-L--------------EGKNYIGEQIHLVSIPDGMEPWD-DR 75 (457)
Q Consensus 14 ~GH~~p~~~la~~L~~~G--h~Vt~~~~~~~~~~~~~~-~--------------~~~~~~~~~~~~~~~~~~~~~~~-~~ 75 (457)
.|+..=.+.||++|+++| |+|.++|-....+.+... . .......+|+..+.+|-+-.... ..
T Consensus 195 GGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~~~~~~~~~~~g~rIvRip~GP~~~~l~K 274 (1050)
T TIGR02468 195 GGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSENDGDEMGESSGAYIIRIPFGPRDKYIPK 274 (1050)
T ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccccccccccccCCCCeEEEEeccCCCCCCcCH
Confidence 356667899999999998 999999964432211000 0 00112335888888886644322 23
Q ss_pred chHHHHHHHHHHhcchHHHH----HHHHHhcCCCCCeeEEEecCCcc--hHHHHHHHcCCceEEEechhhHHHHHHhhhh
Q 012744 76 SDMRKLLEKRLQVMPGKLEG----LIEEIHGREGEKTACLIADGAAG--WAIEVAEKMKLRRAVVVITSAATVALTFSIP 149 (457)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~D~vv~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p 149 (457)
..+..++..|.+.+...+.. +.+++....+..||+|-+-.... .+..+++.+|||+|....+......-
T Consensus 275 e~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG~aa~~L~~~lgVP~V~T~HSLgr~K~~----- 349 (1050)
T TIGR02468 275 EELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAGDSAALLSGALNVPMVLTGHSLGRDKLE----- 349 (1050)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHHHHHHHHHHhhCCCEEEECccchhhhhh-----
Confidence 33455555554443333322 22222111113599998885444 77888999999988865443211000
Q ss_pred hhhhccCCCCCCCCccccccccCCCCCCCccccccccccCCcchhhHHHHHHHHHHHhhhcCcEEEEcCcccccchhhc-
Q 012744 150 KLIEDGVINSNGTPIKEQMIQLAPNMPAISTGELFWTGIGDLTMQKFFFDFMVKNMRATRAADFQLCNSTYELEGGAFS- 228 (457)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~- 228 (457)
.+ +......+.-..... .....+.-....+..++.+++.|..+.+..+.-
T Consensus 350 ~l--------------------------l~~g~~~~~~~~~~y---~~~~Ri~~Ee~~l~~Ad~VIasT~qE~~eq~~lY 400 (1050)
T TIGR02468 350 QL--------------------------LKQGRMSKEEINSTY---KIMRRIEAEELSLDASEIVITSTRQEIEEQWGLY 400 (1050)
T ss_pred hh--------------------------ccccccccccccccc---chHHHHHHHHHHHHhcCEEEEeCHHHHHHHHHHh
Confidence 00 000000000000000 000111111223588899999998876531110
Q ss_pred ------------------------cCCceeeeCcccCCC----CCCCCC-----------CCCCCCcchhhHHhccCCCC
Q 012744 229 ------------------------MIPELLPIGPLLASN----RLGNSA-----------GYFLPEDSKCLEWLDQRQAN 269 (457)
Q Consensus 229 ------------------------~~~~~~~vGpl~~~~----~~~~~~-----------~~~~~~~~~l~~~l~~~~~~ 269 (457)
..+++..|.|=.... ...... ....+...++..|+... ++
T Consensus 401 ~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~p-dk 479 (1050)
T TIGR02468 401 DGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNEEHPAKPDPPIWSEIMRFFTNP-RK 479 (1050)
T ss_pred ccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhcccccccccccchhhHHHHhhcccC-CC
Confidence 022333333322211 000000 00001123456676543 33
Q ss_pred eEEEEEeCCcccCCHHHHHHHHHHHhhcC-----CcEEEEEcCCCCCCCcC----CCchh---HHHH--hcCCceeecCC
Q 012744 270 SVIYVAFGSHTVLEQNQFQELALGLEICN-----RSFLWVVRPDITNDAND----AYPEG---FRER--VAARGQMISWS 335 (457)
Q Consensus 270 ~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~-----~~~i~~~~~~~~~~~~~----~~~~~---~~~~--~~~nv~~~~~~ 335 (457)
.+++..|... +.+-+..+++|+..+. ..+.++++......... ..-.. +.++ ..++|.+.+++
T Consensus 480 -pvIL~VGRL~--p~KGi~~LIeAf~~L~~l~~~~nL~LIiG~gdd~d~l~~~~~~~l~~L~~li~~lgL~g~V~FlG~v 556 (1050)
T TIGR02468 480 -PMILALARPD--PKKNITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSSGSSSVLTSVLKLIDKYDLYGQVAYPKHH 556 (1050)
T ss_pred -cEEEEEcCCc--cccCHHHHHHHHHHhHhhccCCCEEEEEecCchhhhhhccchHHHHHHHHHHHHhCCCCeEEecCCC
Confidence 4555567643 3344555666664432 23434444320000000 00011 1222 24677788898
Q ss_pred Cchh---hccCC----Cccceeecc---C-cchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCH
Q 012744 336 PQQK---VLTHP----SISCFMSHC---G-WNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGR 404 (457)
Q Consensus 336 pq~~---ll~~~----~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~ 404 (457)
++.+ ++..+ ++ ||.-. | -.++.||+++|+|+|+..... ....+... ..|+.++. -+.
T Consensus 557 ~~edvp~lYr~Ad~s~DV--FV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~~g-~nGlLVdP-----~D~ 624 (1050)
T TIGR02468 557 KQSDVPDIYRLAAKTKGV--FINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHRVL-DNGLLVDP-----HDQ 624 (1050)
T ss_pred CHHHHHHHHHHhhhcCCe--eeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhccC-CcEEEECC-----CCH
Confidence 8764 66655 35 77752 3 358999999999999886533 33344442 56777743 578
Q ss_pred HHHHHHHHHHhCCHHHHHHHH
Q 012744 405 EEIKNKVDQVLGDQNFKARAL 425 (457)
Q Consensus 405 ~~l~~~i~~~l~~~~~~~~a~ 425 (457)
++|+++|.++++|+..+++..
T Consensus 625 eaLA~AL~~LL~Dpelr~~m~ 645 (1050)
T TIGR02468 625 QAIADALLKLVADKQLWAECR 645 (1050)
T ss_pred HHHHHHHHHHhhCHHHHHHHH
Confidence 999999999999986544433
No 74
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.91 E-value=5.8e-06 Score=78.75 Aligned_cols=79 Identities=15% Similarity=0.207 Sum_probs=55.9
Q ss_pred CCceeecCCCc-hhhccCCCccceeeccC----cchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCCCc
Q 012744 327 ARGQMISWSPQ-QKVLTHPSISCFMSHCG----WNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGI 401 (457)
Q Consensus 327 ~nv~~~~~~pq-~~ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~ 401 (457)
.++.+.+...+ ..++..+++ +|..+. .+++.||+++|+|+|+... ..+...+.+ .|..+..
T Consensus 251 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~----~~~~e~~~~---~g~~~~~----- 316 (365)
T cd03807 251 DKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATDV----GDNAELVGD---TGFLVPP----- 316 (365)
T ss_pred ceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcCC----CChHHHhhc---CCEEeCC-----
Confidence 45666665543 478999998 887654 3799999999999998543 334444443 3444432
Q ss_pred cCHHHHHHHHHHHhCCHH
Q 012744 402 IGREEIKNKVDQVLGDQN 419 (457)
Q Consensus 402 ~~~~~l~~~i~~~l~~~~ 419 (457)
-+.+++.++|.++++|++
T Consensus 317 ~~~~~l~~~i~~l~~~~~ 334 (365)
T cd03807 317 GDPEALAEAIEALLADPA 334 (365)
T ss_pred CCHHHHHHHHHHHHhChH
Confidence 368999999999999874
No 75
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.91 E-value=1.2e-06 Score=84.03 Aligned_cols=153 Identities=18% Similarity=0.240 Sum_probs=83.5
Q ss_pred EEEeCCcccCCHHHHHHHHHHHhhcC--CcEEEEEcCCCCCCCcCCCchhHHH--HhcCCceeecCCCch---hhccCCC
Q 012744 273 YVAFGSHTVLEQNQFQELALGLEICN--RSFLWVVRPDITNDANDAYPEGFRE--RVAARGQMISWSPQQ---KVLTHPS 345 (457)
Q Consensus 273 ~vs~Gs~~~~~~~~~~~~~~a~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~nv~~~~~~pq~---~ll~~~~ 345 (457)
++..|+.. +.+.+..+++++.... .+++++..+. ....+.+.+.+ ...++|.+.+++++. +++..++
T Consensus 196 i~~~G~~~--~~Kg~~~li~a~~~l~~~~~l~ivG~~~----~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad 269 (363)
T cd04955 196 YLLVGRIV--PENNIDDLIEAFSKSNSGKKLVIVGNAD----HNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAA 269 (363)
T ss_pred EEEEeccc--ccCCHHHHHHHHHhhccCceEEEEcCCC----CcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCC
Confidence 44567764 2233455666665543 5555544432 01111111221 134788889999986 4677777
Q ss_pred ccceeeccCc-----chhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCCHHH
Q 012744 346 ISCFMSHCGW-----NSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGDQNF 420 (457)
Q Consensus 346 ~~~~I~HgG~-----~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~~~~ 420 (457)
+ ++.+.-. +++.||+++|+|+|+..... +...+.. .|..... .+.++++|.++++|++.
T Consensus 270 ~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~~~---~g~~~~~-------~~~l~~~i~~l~~~~~~ 333 (363)
T cd04955 270 L--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVLGD---KAIYFKV-------GDDLASLLEELEADPEE 333 (363)
T ss_pred E--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceeecC---CeeEecC-------chHHHHHHHHHHhCHHH
Confidence 7 6665433 57999999999999875432 2222222 2333321 11299999999998754
Q ss_pred HHHHHHHHHHHHhhhhcCCChHHHHHHHHH
Q 012744 421 KARALKLKEKALSSVREGGSSNKAIQNFVQ 450 (457)
Q Consensus 421 ~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 450 (457)
+++ +++..++...+.-+-....+++++
T Consensus 334 ~~~---~~~~~~~~~~~~fs~~~~~~~~~~ 360 (363)
T cd04955 334 VSA---MAKAARERIREKYTWEKIADQYEE 360 (363)
T ss_pred HHH---HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 333 333333332223444455555554
No 76
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.90 E-value=1.6e-06 Score=82.92 Aligned_cols=139 Identities=12% Similarity=0.144 Sum_probs=82.7
Q ss_pred eEEEEEeCCcccCCHHHHHHHHHHHh---h--cCCcEEEEEcCCCCCCCcCCCchhHHH---H--hcCCceeecCCCc-h
Q 012744 270 SVIYVAFGSHTVLEQNQFQELALGLE---I--CNRSFLWVVRPDITNDANDAYPEGFRE---R--VAARGQMISWSPQ-Q 338 (457)
Q Consensus 270 ~~v~vs~Gs~~~~~~~~~~~~~~a~~---~--~~~~~i~~~~~~~~~~~~~~~~~~~~~---~--~~~nv~~~~~~pq-~ 338 (457)
..+++..|+... .+.+..+++++. . .+.+++++..+. ..+.+.+ . ..+|+.+.++..+ .
T Consensus 188 ~~~~l~~g~~~~--~kg~~~li~a~~~l~~~~~~~~l~i~G~g~--------~~~~~~~~~~~~~~~~~v~~~g~~~~~~ 257 (360)
T cd04951 188 TFVILAVGRLVE--AKDYPNLLKAFAKLLSDYLDIKLLIAGDGP--------LRATLERLIKALGLSNRVKLLGLRDDIA 257 (360)
T ss_pred CEEEEEEeeCch--hcCcHHHHHHHHHHHhhCCCeEEEEEcCCC--------cHHHHHHHHHhcCCCCcEEEecccccHH
Confidence 367777776532 222333444332 2 245666654432 1122222 1 2357878887755 4
Q ss_pred hhccCCCccceeeccC----cchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHH
Q 012744 339 KVLTHPSISCFMSHCG----WNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQV 414 (457)
Q Consensus 339 ~ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~ 414 (457)
+++..+++ +|.-.. .+++.||+++|+|+|+. |.......+.+ .|.. +. .-+.++++++|.++
T Consensus 258 ~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~-~g~~--~~-----~~~~~~~~~~i~~l 323 (360)
T cd04951 258 AYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGD-SGLI--VP-----ISDPEALANKIDEI 323 (360)
T ss_pred HHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecC-CceE--eC-----CCCHHHHHHHHHHH
Confidence 78999998 766433 57899999999999974 44445555555 2444 32 14788999999999
Q ss_pred h-CCHHHHHHHHHHHHHHH
Q 012744 415 L-GDQNFKARALKLKEKAL 432 (457)
Q Consensus 415 l-~~~~~~~~a~~l~~~~~ 432 (457)
+ .++.+++....-++.+.
T Consensus 324 l~~~~~~~~~~~~~~~~~~ 342 (360)
T cd04951 324 LKMSGEERDIIGARRERIV 342 (360)
T ss_pred HhCCHHHHHHHHHHHHHHH
Confidence 8 45566554444344443
No 77
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.90 E-value=5.5e-06 Score=81.56 Aligned_cols=93 Identities=13% Similarity=0.138 Sum_probs=64.1
Q ss_pred cCCceeecCCCchh---hccCC----Cccceeecc---C-cchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEe
Q 012744 326 AARGQMISWSPQQK---VLTHP----SISCFMSHC---G-WNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRL 394 (457)
Q Consensus 326 ~~nv~~~~~~pq~~---ll~~~----~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l 394 (457)
.++|.+.+++++.+ +++.+ ++ ||... | -.++.||+++|+|+|+.... .....+.+. ..|..+
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g~~eiv~~~-~~G~lv 388 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDDG----GPRDIIANC-RNGLLV 388 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCCC----CcHHHhcCC-CcEEEe
Confidence 46777778888765 46654 56 88654 3 35999999999999987543 244555552 567777
Q ss_pred eccCCCccCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 012744 395 ERNQSGIIGREEIKNKVDQVLGDQNFKARALKLKEKALS 433 (457)
Q Consensus 395 ~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~ 433 (457)
+. -+.++++++|.++++|+..+ +++++..++
T Consensus 389 ~~-----~d~~~la~~i~~ll~~~~~~---~~~~~~a~~ 419 (439)
T TIGR02472 389 DV-----LDLEAIASALEDALSDSSQW---QLWSRNGIE 419 (439)
T ss_pred CC-----CCHHHHHHHHHHHHhCHHHH---HHHHHHHHH
Confidence 43 47899999999999988543 334444443
No 78
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.89 E-value=2.7e-06 Score=81.35 Aligned_cols=135 Identities=11% Similarity=0.078 Sum_probs=80.8
Q ss_pred CeEEEEEeCCccc-CCHHHHHHHHHHHhhc--CCcEEEEEcCCCCCCCcCCCchhHHH---H--hcCCceeecCCCc-hh
Q 012744 269 NSVIYVAFGSHTV-LEQNQFQELALGLEIC--NRSFLWVVRPDITNDANDAYPEGFRE---R--VAARGQMISWSPQ-QK 339 (457)
Q Consensus 269 ~~~v~vs~Gs~~~-~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~---~--~~~nv~~~~~~pq-~~ 339 (457)
...+++..|+... ...+.+...+..+.+. +.+++++..++ ..+.+.+ + ..+++.+.++..+ .+
T Consensus 191 ~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~--------~~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 262 (358)
T cd03812 191 DKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDGE--------LEEEIKKKVKELGLEDKVIFLGVRNDVPE 262 (358)
T ss_pred CCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCCc--------hHHHHHHHHHhcCCCCcEEEecccCCHHH
Confidence 3466777777532 2233344444444332 34544444322 1122221 1 2467777787544 47
Q ss_pred hccCCCccceeec----cCcchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHh
Q 012744 340 VLTHPSISCFMSH----CGWNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVL 415 (457)
Q Consensus 340 ll~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l 415 (457)
++..+++ +|.- |-.+++.||+++|+|+|+..... ....+.. +.|.... .-+.++++++|.+++
T Consensus 263 ~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~--~~~~~~~-----~~~~~~~a~~i~~l~ 329 (358)
T cd03812 263 LLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD--LVKFLSL-----DESPEIWAEEILKLK 329 (358)
T ss_pred HHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc--CccEEeC-----CCCHHHHHHHHHHHH
Confidence 8988998 7754 34579999999999999865543 3333343 5555543 235799999999999
Q ss_pred CCHHHHHHH
Q 012744 416 GDQNFKARA 424 (457)
Q Consensus 416 ~~~~~~~~a 424 (457)
+|+..+++.
T Consensus 330 ~~~~~~~~~ 338 (358)
T cd03812 330 SEDRRERSS 338 (358)
T ss_pred hCcchhhhh
Confidence 998755433
No 79
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.88 E-value=1.3e-06 Score=85.92 Aligned_cols=218 Identities=13% Similarity=0.083 Sum_probs=115.1
Q ss_pred cCcEEEEcCcccccchhhccCCceeeeC-cccCCCCCCCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCcccCCHHHHH
Q 012744 210 AADFQLCNSTYELEGGAFSMIPELLPIG-PLLASNRLGNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTVLEQNQFQ 288 (457)
Q Consensus 210 ~~~~~l~~s~~~le~~~~~~~~~~~~vG-pl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~ 288 (457)
..|.+++--++|-+.. ....-++.||| |+....... +...+..+-+.-.+++++|-+-.||...-=...+.
T Consensus 361 ~vD~ll~IfPFE~~~y-~~~gv~v~yVGHPL~d~i~~~-------~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllP 432 (608)
T PRK01021 361 YLDLLLLILPFEQNLF-KDSPLRTVYLGHPLVETISSF-------SPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLT 432 (608)
T ss_pred HhhhheecCccCHHHH-HhcCCCeEEECCcHHhhcccC-------CCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHH
Confidence 4466777777776665 55677899999 555542211 22233333343344567999999995322223344
Q ss_pred HHHHHHh--hc--CCcEEEEEcCCCCCCCcCCCchhHHHHhc-C---CceeecCCCchhhccCCCccceeeccCcchhhh
Q 012744 289 ELALGLE--IC--NRSFLWVVRPDITNDANDAYPEGFRERVA-A---RGQMISWSPQQKVLTHPSISCFMSHCGWNSTTE 360 (457)
Q Consensus 289 ~~~~a~~--~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~---nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~e 360 (457)
.++++.+ .. ..++++...+. ...+.+.+... . .+.++.--...+++..||+ .+.-+|- .+.|
T Consensus 433 v~l~aa~~~~l~~~l~fvvp~a~~-------~~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT-aTLE 502 (608)
T PRK01021 433 IQVQAFLASSLASTHQLLVSSANP-------KYDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT-IVLE 502 (608)
T ss_pred HHHHHHHHHHhccCeEEEEecCch-------hhHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-HHHH
Confidence 4555554 33 34555543322 01112222221 1 1233210012578999998 8877775 5789
Q ss_pred hhhcCCceeccc-cccchhhhHHhhhhh----hc-----eeEEeecc--C-CCccCHHHHHHHHHHHhCCHHHHHHHHHH
Q 012744 361 GVSNGVPFLCWP-FFADQFMNTTYICDV----WK-----VGLRLERN--Q-SGIIGREEIKNKVDQVLGDQNFKARALKL 427 (457)
Q Consensus 361 al~~GvP~l~~P-~~~DQ~~na~~v~~~----lG-----~g~~l~~~--~-~~~~~~~~l~~~i~~~l~~~~~~~~a~~l 427 (457)
+..+|+|||++= ...=-+.-|+++.+- .+ +|..+-++ . +++.+++.|++++ ++|.|+.++++.++=
T Consensus 503 aAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~~~r~~~~~~ 581 (608)
T PRK01021 503 TALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTSQSKEKQKDA 581 (608)
T ss_pred HHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 999999998752 221122334444430 00 11111111 1 2568999999997 888887655444444
Q ss_pred HHHHHhhhhcCCChHHHHH
Q 012744 428 KEKALSSVREGGSSNKAIQ 446 (457)
Q Consensus 428 ~~~~~~~~~~~g~~~~~~~ 446 (457)
-+++++.+.+|-..-+.+-
T Consensus 582 l~~lr~~Lg~~~~~~~~~~ 600 (608)
T PRK01021 582 CRDLYQAMNESASTMKECL 600 (608)
T ss_pred HHHHHHHhcCCCCCHHHHH
Confidence 4444444333444444333
No 80
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.88 E-value=8.2e-07 Score=84.07 Aligned_cols=127 Identities=9% Similarity=0.011 Sum_probs=79.7
Q ss_pred EEEEeCCcccCCHHHHHHHHHHHhhcCCcEEEEEcCCCCCCCcCCCchhHHHH--hcCCceeecCCCch---hhccCCCc
Q 012744 272 IYVAFGSHTVLEQNQFQELALGLEICNRSFLWVVRPDITNDANDAYPEGFRER--VAARGQMISWSPQQ---KVLTHPSI 346 (457)
Q Consensus 272 v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~nv~~~~~~pq~---~ll~~~~~ 346 (457)
+.+..|... +.+....+++++.+.+.++++...+. ....+.....+. ..+++.+.+++++. .+++.+++
T Consensus 173 ~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~----~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~ 246 (335)
T cd03802 173 YLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVS----DPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARA 246 (335)
T ss_pred EEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCC----CHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcE
Confidence 444556652 33445567778877888877666543 001011111111 25788889999975 46888888
Q ss_pred cceee----ccC-cchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCCH
Q 012744 347 SCFMS----HCG-WNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGDQ 418 (457)
Q Consensus 347 ~~~I~----HgG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~~ 418 (457)
++. +-| ..++.||+++|+|+|+.... .....+.+. ..|...+ . .++++++|..++..+
T Consensus 247 --~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i~~~-~~g~l~~----~---~~~l~~~l~~l~~~~ 309 (335)
T cd03802 247 --LLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVVEDG-VTGFLVD----S---VEELAAAVARADRLD 309 (335)
T ss_pred --EEeCCcccCCcchHHHHHHhcCCCEEEeCCC----CchhheeCC-CcEEEeC----C---HHHHHHHHHHHhccH
Confidence 653 234 35899999999999987653 234444442 3676663 2 899999999987643
No 81
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.88 E-value=6.3e-06 Score=78.70 Aligned_cols=134 Identities=16% Similarity=0.140 Sum_probs=79.3
Q ss_pred eEEEEEeCCccc-CCHHHHHHHHHHHhhc--CCcEEEEEcCCCCCCCcCCCchhHH---HH--hcCCceeecCCCc-hhh
Q 012744 270 SVIYVAFGSHTV-LEQNQFQELALGLEIC--NRSFLWVVRPDITNDANDAYPEGFR---ER--VAARGQMISWSPQ-QKV 340 (457)
Q Consensus 270 ~~v~vs~Gs~~~-~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~---~~--~~~nv~~~~~~pq-~~l 340 (457)
..+++..|.... ...+.+..++..+... +.+++++..+. ....+.+.+. .+ ..++|.+.++.+. ..+
T Consensus 185 ~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~----~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 260 (355)
T cd03819 185 KPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQ----GRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAA 260 (355)
T ss_pred ceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCc----ccchHHHHHHHHHHHcCCcceEEEcCCcccHHHH
Confidence 366677777543 2344455555555443 44555544432 1111111111 11 2467888888543 368
Q ss_pred ccCCCccceeecc----C-cchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHh
Q 012744 341 LTHPSISCFMSHC----G-WNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVL 415 (457)
Q Consensus 341 l~~~~~~~~I~Hg----G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l 415 (457)
+..+++ +|+-. | .+++.||+++|+|+|+.... .....+.+. +.|..+.. -+.+++.++|..++
T Consensus 261 l~~ad~--~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~----~~~e~i~~~-~~g~~~~~-----~~~~~l~~~i~~~~ 328 (355)
T cd03819 261 YALADI--VVSASTEPEAFGRTAVEAQAMGRPVIASDHG----GARETVRPG-ETGLLVPP-----GDAEALAQALDQIL 328 (355)
T ss_pred HHhCCE--EEecCCCCCCCchHHHHHHhcCCCEEEcCCC----CcHHHHhCC-CceEEeCC-----CCHHHHHHHHHHHH
Confidence 988998 65432 3 36999999999999986543 244455552 57877742 48899999996555
Q ss_pred C-CHH
Q 012744 416 G-DQN 419 (457)
Q Consensus 416 ~-~~~ 419 (457)
. +++
T Consensus 329 ~~~~~ 333 (355)
T cd03819 329 SLLPE 333 (355)
T ss_pred hhCHH
Confidence 3 554
No 82
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.85 E-value=2.8e-06 Score=81.22 Aligned_cols=84 Identities=14% Similarity=0.226 Sum_probs=60.7
Q ss_pred cCCceee-cCCCch---hhccCCCccceeec------cCcchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEee
Q 012744 326 AARGQMI-SWSPQQ---KVLTHPSISCFMSH------CGWNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLE 395 (457)
Q Consensus 326 ~~nv~~~-~~~pq~---~ll~~~~~~~~I~H------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~ 395 (457)
.+++.+. .|+|+. .++..+++ +|.- |..+++.||+++|+|+|+.+... ...+... +.|....
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~~ 317 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLVP 317 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEEc
Confidence 4677776 458864 68888988 7632 33468999999999999877644 3334553 6777764
Q ss_pred ccCCCccCHHHHHHHHHHHhCCHHHHH
Q 012744 396 RNQSGIIGREEIKNKVDQVLGDQNFKA 422 (457)
Q Consensus 396 ~~~~~~~~~~~l~~~i~~~l~~~~~~~ 422 (457)
. -+.++++++|.++++|++.++
T Consensus 318 ~-----~d~~~~~~~l~~l~~~~~~~~ 339 (366)
T cd03822 318 P-----GDPAALAEAIRRLLADPELAQ 339 (366)
T ss_pred C-----CCHHHHHHHHHHHHcChHHHH
Confidence 2 368999999999999865443
No 83
>PLN02275 transferase, transferring glycosyl groups
Probab=98.84 E-value=3.8e-06 Score=80.71 Aligned_cols=320 Identities=13% Similarity=0.057 Sum_probs=160.0
Q ss_pred CCEEEEEcCCCCcChHHHHHHHHHHHhCCC-eEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHH
Q 012744 3 SPHVVVIPNPEQGHVIPLLELSQNLAKHGL-RITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKL 81 (457)
Q Consensus 3 ~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh-~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (457)
+-++.++..|-.|.-..+..++..|+++|| +|++++.+......... ...+++.+.++. .............
T Consensus 4 ~~~~~~~~~~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~~------~~~~v~v~r~~~-~~~~~~~~~~~~~ 76 (371)
T PLN02275 4 RGRAAVVVLGDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPALL------NHPSIHIHLMVQ-PRLLQRLPRVLYA 76 (371)
T ss_pred ccEEEEEEecCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHh------cCCcEEEEECCC-cccccccccchHH
Confidence 457778888888999999999999999986 79999865532211111 113688888764 1111111112221
Q ss_pred HHHHHHhcchHHHHHHHHH--hcCCCCCeeEEEecC-Ccc----hHHHHHHHcCCceEEEechhhHHHHHHhhhhhhhhc
Q 012744 82 LEKRLQVMPGKLEGLIEEI--HGREGEKTACLIADG-AAG----WAIEVAEKMKLRRAVVVITSAATVALTFSIPKLIED 154 (457)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l--~~~~~~~~D~vv~D~-~~~----~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~ 154 (457)
++.+... ...+..++..+ +. .+||+|++.. ... .+..++...++|++..+...... .. .
T Consensus 77 ~~~~~~~-~~~~~~~~~~~~~~~---~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~--~~-------~- 142 (371)
T PLN02275 77 LALLLKV-AIQFLMLLWFLCVKI---PRPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWHNFGYT--LL-------A- 142 (371)
T ss_pred HHHHHHH-HHHHHHHHHHHHhhC---CCCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcCCccHH--HH-------h-
Confidence 1111110 01112222211 22 7999998853 221 33455667899998754332110 00 0
Q ss_pred cCCCCCCCCccccccccCCCCCCCccccccccccCCcchhhHHHHHHHHHHH-hhhcCcEEEEcCcccccchhhccC-C-
Q 012744 155 GVINSNGTPIKEQMIQLAPNMPAISTGELFWTGIGDLTMQKFFFDFMVKNMR-ATRAADFQLCNSTYELEGGAFSMI-P- 231 (457)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~s~~~le~~~~~~~-~- 231 (457)
...... ......+..... ..+.+|.+++.|...-+.-..... +
T Consensus 143 -------------------------------~~~~~~---~~~~~~~~~~e~~~~~~ad~ii~~S~~~~~~l~~~~g~~i 188 (371)
T PLN02275 143 -------------------------------LSLGRS---HPLVRLYRWYERHYGKMADGHLCVTKAMQHELDQNWGIRA 188 (371)
T ss_pred -------------------------------cccCCC---CHHHHHHHHHHHHHHhhCCEEEECCHHHHHHHHHhcCCCe
Confidence 000000 001111111111 235678888888664332211111 1
Q ss_pred ceeeeCcccCCCCCCCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhh---------------
Q 012744 232 ELLPIGPLLASNRLGNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTVLEQNQFQELALGLEI--------------- 296 (457)
Q Consensus 232 ~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~--------------- 296 (457)
.+++-|. ..... +.... ..+. .+++.++++.|.... .+.+..+++|+..
T Consensus 189 ~vi~n~~--~~~f~--------~~~~~--~~~~--~~~~~~i~~~grl~~--~k~~~~li~a~~~l~~~~~~~~~~~~~~ 252 (371)
T PLN02275 189 TVLYDQP--PEFFR--------PASLE--IRLR--PNRPALVVSSTSWTP--DEDFGILLEAAVMYDRRVAARLNESDSA 252 (371)
T ss_pred EEECCCC--HHHcC--------cCCch--hccc--CCCcEEEEEeCceec--cCCHHHHHHHHHHHHhhhhhcccccccc
Confidence 1222221 01000 00000 0011 122345555566532 2223333333322
Q ss_pred -------cCCcEEEEEcCCCCCCCcCCCchhHHHHh----cCCceee-cCCCchh---hccCCCccceee-c-----cC-
Q 012744 297 -------CNRSFLWVVRPDITNDANDAYPEGFRERV----AARGQMI-SWSPQQK---VLTHPSISCFMS-H-----CG- 354 (457)
Q Consensus 297 -------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~nv~~~-~~~pq~~---ll~~~~~~~~I~-H-----gG- 354 (457)
.+.+++++..+. ..+.+.+.. -+|+.+. .|+|+.+ +|+.+|+ +|. + -|
T Consensus 253 ~~~~~~~~~i~l~ivG~G~--------~~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~ 322 (371)
T PLN02275 253 SGKQSLYPRLLFIITGKGP--------QKAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDL 322 (371)
T ss_pred ccccccCCCeEEEEEeCCC--------CHHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccc
Confidence 234455544433 223333222 1456655 4788764 5999999 773 1 12
Q ss_pred cchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHh
Q 012744 355 WNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVL 415 (457)
Q Consensus 355 ~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l 415 (457)
-+++.||+++|+|+|+.... .+...+.+. +.|..++ +.++++++|.+++
T Consensus 323 p~~llEAmA~G~PVVa~~~g----g~~eiv~~g-~~G~lv~-------~~~~la~~i~~l~ 371 (371)
T PLN02275 323 PMKVVDMFGCGLPVCAVSYS----CIGELVKDG-KNGLLFS-------SSSELADQLLELL 371 (371)
T ss_pred cHHHHHHHHCCCCEEEecCC----ChHHHccCC-CCeEEEC-------CHHHHHHHHHHhC
Confidence 35799999999999986432 356666664 6888772 4789999998875
No 84
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.83 E-value=2.1e-05 Score=73.35 Aligned_cols=313 Identities=15% Similarity=0.146 Sum_probs=184.2
Q ss_pred CCCCcChHHHHHHHHHHHhC--CCeEEEEe-CCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHHHHHHH
Q 012744 11 NPEQGHVIPLLELSQNLAKH--GLRITFVN-SEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLLEKRLQ 87 (457)
Q Consensus 11 ~~~~GH~~p~~~la~~L~~~--Gh~Vt~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (457)
.-+.|-++...+|.++|.++ ++.|++-+ ++...+.+.+.. ++.+....+|-+.
T Consensus 56 aaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~------~~~v~h~YlP~D~------------------ 111 (419)
T COG1519 56 AASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALF------GDSVIHQYLPLDL------------------ 111 (419)
T ss_pred ecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHc------CCCeEEEecCcCc------------------
Confidence 34669999999999999998 88988888 555555555542 1235555666222
Q ss_pred hcchHHHHHHHHHhcCCCCCeeEEEecCCcch--HHHHHHHcCCceEEEechhhHHHHHHhhhhhhhhccCCCCCCCCcc
Q 012744 88 VMPGKLEGLIEEIHGREGEKTACLIADGAAGW--AIEVAEKMKLRRAVVVITSAATVALTFSIPKLIEDGVINSNGTPIK 165 (457)
Q Consensus 88 ~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~--~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 165 (457)
...++++++. ++||++|.-....| ...-++..|+|.+.+..=..
T Consensus 112 --~~~v~rFl~~------~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRLS-------------------------- 157 (419)
T COG1519 112 --PIAVRRFLRK------WRPKLLIIMETELWPNLINELKRRGIPLVLVNARLS-------------------------- 157 (419)
T ss_pred --hHHHHHHHHh------cCCCEEEEEeccccHHHHHHHHHcCCCEEEEeeeec--------------------------
Confidence 1246677777 89998666555554 45556778999999632110
Q ss_pred ccccccCCCCCCCccccccccccCCcchhhHHHHHHHHHHH-hhhcCcEEEEcCcccccchhhcc-CCceeeeCcccCCC
Q 012744 166 EQMIQLAPNMPAISTGELFWTGIGDLTMQKFFFDFMVKNMR-ATRAADFQLCNSTYELEGGAFSM-IPELLPIGPLLASN 243 (457)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~s~~~le~~~~~~-~~~~~~vGpl~~~~ 243 (457)
.+.+. .+..+....+ .+.+.+.++..|...-+-- ..+ -+++..+|-+-.+.
T Consensus 158 --------------~rS~~------------~y~k~~~~~~~~~~~i~li~aQse~D~~Rf-~~LGa~~v~v~GNlKfd~ 210 (419)
T COG1519 158 --------------DRSFA------------RYAKLKFLARLLFKNIDLILAQSEEDAQRF-RSLGAKPVVVTGNLKFDI 210 (419)
T ss_pred --------------hhhhH------------HHHHHHHHHHHHHHhcceeeecCHHHHHHH-HhcCCcceEEecceeecC
Confidence 00011 0111111112 2356677777776544432 222 33477888776654
Q ss_pred CCCCCCCCCCCCcchhhHHhccCCC-CeEEEEEeCCcccCCHHHHHHHHHHHhhcC--CcEEEEEcCCCCCCCcCCCchh
Q 012744 244 RLGNSAGYFLPEDSKCLEWLDQRQA-NSVIYVAFGSHTVLEQNQFQELALGLEICN--RSFLWVVRPDITNDANDAYPEG 320 (457)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~l~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~--~~~i~~~~~~~~~~~~~~~~~~ 320 (457)
... ...+.++..|-..-+. + .+.+..+|+. .+.+.+-....++.+.. ...||+-... +.. +.
T Consensus 211 ~~~------~~~~~~~~~~r~~l~~~r-~v~iaaSTH~-GEeei~l~~~~~l~~~~~~~llIlVPRHp------ERf-~~ 275 (419)
T COG1519 211 EPP------PQLAAELAALRRQLGGHR-PVWVAASTHE-GEEEIILDAHQALKKQFPNLLLILVPRHP------ERF-KA 275 (419)
T ss_pred CCC------hhhHHHHHHHHHhcCCCC-ceEEEecCCC-chHHHHHHHHHHHHhhCCCceEEEecCCh------hhH-HH
Confidence 432 1122233333333222 3 5666666643 23444555666664433 3444443322 111 11
Q ss_pred HHHHh------------------cCCceeecCCC-chhhccCCCc----cceeeccCcchhhhhhhcCCceeccccccch
Q 012744 321 FRERV------------------AARGQMISWSP-QQKVLTHPSI----SCFMSHCGWNSTTEGVSNGVPFLCWPFFADQ 377 (457)
Q Consensus 321 ~~~~~------------------~~nv~~~~~~p-q~~ll~~~~~----~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ 377 (457)
+.+.. ..+|.+.+-.- ...++.-+++ |-++.+||+| ..|.+++|+|+|.=|+..-|
T Consensus 276 v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf 354 (419)
T COG1519 276 VENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFNF 354 (419)
T ss_pred HHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCccccH
Confidence 11111 12333333322 2234444554 3456799997 68999999999999999999
Q ss_pred hhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 012744 378 FMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGDQNFKARALKLKEKAL 432 (457)
Q Consensus 378 ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~ 432 (457)
.+-++++.+. |.|+.++ +.+.|.+++..+++|++.+++..+-...+-
T Consensus 355 ~ei~~~l~~~-ga~~~v~-------~~~~l~~~v~~l~~~~~~r~~~~~~~~~~v 401 (419)
T COG1519 355 SDIAERLLQA-GAGLQVE-------DADLLAKAVELLLADEDKREAYGRAGLEFL 401 (419)
T ss_pred HHHHHHHHhc-CCeEEEC-------CHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 9999999996 9999994 388999999999998866555544444443
No 85
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.81 E-value=3.2e-06 Score=80.81 Aligned_cols=91 Identities=10% Similarity=0.160 Sum_probs=63.1
Q ss_pred hcCCceeecCCCch---hhccCCCccceeec----cCcchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeecc
Q 012744 325 VAARGQMISWSPQQ---KVLTHPSISCFMSH----CGWNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERN 397 (457)
Q Consensus 325 ~~~nv~~~~~~pq~---~ll~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~ 397 (457)
...++.+.+++|+. .++..+++ +|.. |..+++.||+++|+|+|+..... ....+. ..|..+..
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~---~~~~~~~~- 320 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVAG---DAALYFDP- 320 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCCC----ccceec---CceeeeCC-
Confidence 35788888999876 57888888 6643 33468999999999999865421 222222 23444432
Q ss_pred CCCccCHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 012744 398 QSGIIGREEIKNKVDQVLGDQNFKARALKLKE 429 (457)
Q Consensus 398 ~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~ 429 (457)
-+.+++.++|.++++|++.+.+..+-+.
T Consensus 321 ----~~~~~~~~~i~~l~~~~~~~~~~~~~~~ 348 (365)
T cd03809 321 ----LDPEALAAAIERLLEDPALREELRERGL 348 (365)
T ss_pred ----CCHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3789999999999999876665554443
No 86
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.80 E-value=3e-05 Score=79.48 Aligned_cols=86 Identities=16% Similarity=0.195 Sum_probs=56.8
Q ss_pred cCCceeecCC-Cc---hhhccC----CCccceeecc---C-cchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEE
Q 012744 326 AARGQMISWS-PQ---QKVLTH----PSISCFMSHC---G-WNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLR 393 (457)
Q Consensus 326 ~~nv~~~~~~-pq---~~ll~~----~~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~ 393 (457)
.++|.+.++. +. .+++.+ +++ ||.-. | --|+.||+++|+|+|+.-.. -.+..|... .-|..
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adV--fV~PS~~EpFGLvvLEAMAcGlPVVAT~~G----G~~EiV~dg-~tGfL 690 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGI--FVQPALYEAFGLTVLEAMTCGLPTFATRFG----GPLEIIQDG-VSGFH 690 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcE--EEECCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHhcCC-CcEEE
Confidence 4677777764 32 234542 245 77542 2 24999999999999986544 355666663 67888
Q ss_pred eeccCCCccCHHHHHHHHHHHh----CCHHHHHH
Q 012744 394 LERNQSGIIGREEIKNKVDQVL----GDQNFKAR 423 (457)
Q Consensus 394 l~~~~~~~~~~~~l~~~i~~~l----~~~~~~~~ 423 (457)
++. -+.++++++|.+++ .|+..+++
T Consensus 691 Vdp-----~D~eaLA~aL~~ll~kll~dp~~~~~ 719 (784)
T TIGR02470 691 IDP-----YHGEEAAEKIVDFFEKCDEDPSYWQK 719 (784)
T ss_pred eCC-----CCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 853 47889999998876 57755443
No 87
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.78 E-value=2.1e-05 Score=75.75 Aligned_cols=111 Identities=9% Similarity=0.033 Sum_probs=70.4
Q ss_pred CCceeecCCCc-hhhccCCCccceee--c--cCcchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCCCc
Q 012744 327 ARGQMISWSPQ-QKVLTHPSISCFMS--H--CGWNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGI 401 (457)
Q Consensus 327 ~nv~~~~~~pq-~~ll~~~~~~~~I~--H--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~ 401 (457)
.++.+.++..+ .+++..+|+ +|. + |--.++.||+++|+|+|+.... .+...+.+. ..|..++.
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g~~e~i~~~-~~g~~~~~----- 322 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVG----GNPELVQHG-VTGALVPP----- 322 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCC----CcHHHhcCC-CceEEeCC-----
Confidence 45666665544 378999998 773 2 3357999999999999986653 345555553 56777642
Q ss_pred cCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 012744 402 IGREEIKNKVDQVLGDQNFKARALKLKEKALSSVREGGSSNKAIQNFVQSI 452 (457)
Q Consensus 402 ~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 452 (457)
-+.++++++|.++++|+..++ +++++.++...+.-+.....+++.+-.
T Consensus 323 ~d~~~la~~i~~l~~~~~~~~---~~~~~a~~~~~~~fs~~~~~~~~~~~y 370 (374)
T TIGR03088 323 GDAVALARALQPYVSDPAARR---AHGAAGRARAEQQFSINAMVAAYAGLY 370 (374)
T ss_pred CCHHHHHHHHHHHHhCHHHHH---HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 478999999999998875433 233333322222445545555554433
No 88
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.75 E-value=5.2e-06 Score=79.54 Aligned_cols=130 Identities=15% Similarity=0.133 Sum_probs=80.8
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHhhc--CCcEEEEEcCCCCCCCcCCCchhHHH---H--hcCCceeecCCCc--h---
Q 012744 271 VIYVAFGSHTVLEQNQFQELALGLEIC--NRSFLWVVRPDITNDANDAYPEGFRE---R--VAARGQMISWSPQ--Q--- 338 (457)
Q Consensus 271 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~---~--~~~nv~~~~~~pq--~--- 338 (457)
.+++..|.....+.+.+..+++++... +.+++++..+. ..+.+.+ . .+.+|.+.+|+++ .
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~--------~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~ 252 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGS--------DFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQ 252 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCc--------cHHHHHHHHHHcCCCCeEEEecccCCcHHHHH
Confidence 556677765432334466677776554 34454444332 1122222 1 2468888898854 2
Q ss_pred hhccCCCccceeec----cCcchhhhhhhcCCceeccc-cccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHH
Q 012744 339 KVLTHPSISCFMSH----CGWNSTTEGVSNGVPFLCWP-FFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQ 413 (457)
Q Consensus 339 ~ll~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P-~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ 413 (457)
+.+..+++ +|.. |--.++.||+++|+|+|+.- ... ....+.+. ..|..+.. -+.++++++|.+
T Consensus 253 ~~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~~-~~G~lv~~-----~d~~~la~~i~~ 320 (359)
T PRK09922 253 QKIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKPG-LNGELYTP-----GNIDEFVGKLNK 320 (359)
T ss_pred HHHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccCC-CceEEECC-----CCHHHHHHHHHH
Confidence 34555777 7653 22579999999999999875 322 22345553 56777742 489999999999
Q ss_pred HhCCHHH
Q 012744 414 VLGDQNF 420 (457)
Q Consensus 414 ~l~~~~~ 420 (457)
+++|++.
T Consensus 321 l~~~~~~ 327 (359)
T PRK09922 321 VISGEVK 327 (359)
T ss_pred HHhCccc
Confidence 9999863
No 89
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.73 E-value=2.6e-06 Score=79.76 Aligned_cols=147 Identities=12% Similarity=0.085 Sum_probs=85.8
Q ss_pred eEEEEEeCCcccCCHHHHHHHHHHHhhcCCc-EEEEEcCCCCCCCcCCCchhHHHHhcC--CceeecCCCchhhccCCCc
Q 012744 270 SVIYVAFGSHTVLEQNQFQELALGLEICNRS-FLWVVRPDITNDANDAYPEGFRERVAA--RGQMISWSPQQKVLTHPSI 346 (457)
Q Consensus 270 ~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~--nv~~~~~~pq~~ll~~~~~ 346 (457)
++|.+--||...--...+..++++......+ ..+..... ... +.+.+.... .+.+.+ .-.+++..||+
T Consensus 168 ~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a------~~~-~~i~~~~~~~~~~~~~~--~~~~~m~~aDl 238 (347)
T PRK14089 168 GTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSF------FKG-KDLKEIYGDISEFEISY--DTHKALLEAEF 238 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCC------CcH-HHHHHHHhcCCCcEEec--cHHHHHHhhhH
Confidence 5899999986432224444444555333222 22222222 001 222222221 222332 23478999999
Q ss_pred cceeeccCcchhhhhhhcCCceeccccc--cchhhhHHhhh---hhhceeEEeec---------c-CCCccCHHHHHHHH
Q 012744 347 SCFMSHCGWNSTTEGVSNGVPFLCWPFF--ADQFMNTTYIC---DVWKVGLRLER---------N-QSGIIGREEIKNKV 411 (457)
Q Consensus 347 ~~~I~HgG~~s~~eal~~GvP~l~~P~~--~DQ~~na~~v~---~~lG~g~~l~~---------~-~~~~~~~~~l~~~i 411 (457)
+|+-+|..|. |+..+|+|+|+ ++- .-|+.||+++. . .|+...+.. + -++..|++.|.+++
T Consensus 239 --al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~-igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~i 313 (347)
T PRK14089 239 --AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKH-IGLANIFFDFLGKEPLHPELLQEFVTVENLLKAY 313 (347)
T ss_pred --HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCe-eehHHHhcCCCcccccCchhhcccCCHHHHHHHH
Confidence 9999999999 99999999987 654 46888999988 4 354444410 0 13668999999999
Q ss_pred HHHhCCHHHHHHHHHHHHHH
Q 012744 412 DQVLGDQNFKARALKLKEKA 431 (457)
Q Consensus 412 ~~~l~~~~~~~~a~~l~~~~ 431 (457)
.+ ......++...++++.+
T Consensus 314 ~~-~~~~~~~~~~~~l~~~l 332 (347)
T PRK14089 314 KE-MDREKFFKKSKELREYL 332 (347)
T ss_pred HH-HHHHHHHHHHHHHHHHh
Confidence 88 22223444444444444
No 90
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.72 E-value=1.9e-05 Score=76.51 Aligned_cols=138 Identities=12% Similarity=0.119 Sum_probs=80.0
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHhhc--CCcEEEEEcCCCCCCCcCCCchhHHHH---h---cCCcee-ecCCCch---
Q 012744 271 VIYVAFGSHTVLEQNQFQELALGLEIC--NRSFLWVVRPDITNDANDAYPEGFRER---V---AARGQM-ISWSPQQ--- 338 (457)
Q Consensus 271 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~---~---~~nv~~-~~~~pq~--- 338 (457)
.+++..|... +.+.+..+++++... +..++++.++. ....+.+.+.+. . ..++.. .+++++.
T Consensus 202 ~~i~~~Grl~--~~Kg~~~li~a~~~l~~~~~l~i~g~g~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 275 (388)
T TIGR02149 202 PYILFVGRIT--RQKGVPHLLDAVHYIPKDVQVVLCAGAP----DTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELV 275 (388)
T ss_pred eEEEEEcccc--cccCHHHHHHHHHHHhhcCcEEEEeCCC----CcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHH
Confidence 4566677653 233455566666544 45555554433 111111122211 1 123543 3678764
Q ss_pred hhccCCCccceeec----cCcchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccC-CCccCHHHHHHHHHH
Q 012744 339 KVLTHPSISCFMSH----CGWNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQ-SGIIGREEIKNKVDQ 413 (457)
Q Consensus 339 ~ll~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~-~~~~~~~~l~~~i~~ 413 (457)
.++..+|+ +|.- |...++.||+++|+|+|+.... .....+.+. +.|..++.+. +..-..+++.++|.+
T Consensus 276 ~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~----~~~e~i~~~-~~G~~~~~~~~~~~~~~~~l~~~i~~ 348 (388)
T TIGR02149 276 ELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASATG----GIPEVVVDG-ETGFLVPPDNSDADGFQAELAKAINI 348 (388)
T ss_pred HHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCCC----CHHHHhhCC-CceEEcCCCCCcccchHHHHHHHHHH
Confidence 57899998 7753 2235779999999999986543 355566663 6788875311 001122899999999
Q ss_pred HhCCHHHH
Q 012744 414 VLGDQNFK 421 (457)
Q Consensus 414 ~l~~~~~~ 421 (457)
+++|+.-+
T Consensus 349 l~~~~~~~ 356 (388)
T TIGR02149 349 LLADPELA 356 (388)
T ss_pred HHhCHHHH
Confidence 99987543
No 91
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.71 E-value=8.7e-06 Score=76.71 Aligned_cols=216 Identities=16% Similarity=0.131 Sum_probs=123.2
Q ss_pred hcCcEEEEcCcccccchhhccCCceeeeC-cccCCCCCCCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCcccCCHHHH
Q 012744 209 RAADFQLCNSTYELEGGAFSMIPELLPIG-PLLASNRLGNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTVLEQNQF 287 (457)
Q Consensus 209 ~~~~~~l~~s~~~le~~~~~~~~~~~~vG-pl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~ 287 (457)
...|.+++--++|-++. ....-++.||| |+...-... ..+....+.+ -.+++++|.+-.||...-=...+
T Consensus 132 ~~~D~ll~ifPFE~~~y-~~~g~~~~~VGHPl~d~~~~~-------~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rll 202 (373)
T PF02684_consen 132 KYVDHLLVIFPFEPEFY-KKHGVPVTYVGHPLLDEVKPE-------PDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLL 202 (373)
T ss_pred HHHhheeECCcccHHHH-hccCCCeEEECCcchhhhccC-------CCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHH
Confidence 34467777777776665 55566899999 555543322 2223333333 33456799999999532111223
Q ss_pred HHHHHHHhh-----cCCcEEEEEcCCCCCCCcCCCchhHHH----HhcCCceeecCC-CchhhccCCCccceeeccCcch
Q 012744 288 QELALGLEI-----CNRSFLWVVRPDITNDANDAYPEGFRE----RVAARGQMISWS-PQQKVLTHPSISCFMSHCGWNS 357 (457)
Q Consensus 288 ~~~~~a~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~----~~~~nv~~~~~~-pq~~ll~~~~~~~~I~HgG~~s 357 (457)
..++++.+. .+.++++..... ..+.+.+ ....++.+.-.. .-.++|..+++ .+.=.|- .
T Consensus 203 P~~l~aa~~l~~~~p~l~fvvp~a~~--------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SGT-a 271 (373)
T PF02684_consen 203 PIFLEAAKLLKKQRPDLQFVVPVAPE--------VHEELIEEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASGT-A 271 (373)
T ss_pred HHHHHHHHHHHHhCCCeEEEEecCCH--------HHHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCCH-H
Confidence 334454322 244555554432 1112111 123333333222 33468888888 6666664 6
Q ss_pred hhhhhhcCCceeccc-cccchhhhHHhhhhhhce-e-------EEeecc-CCCccCHHHHHHHHHHHhCCHHHHHHHHHH
Q 012744 358 TTEGVSNGVPFLCWP-FFADQFMNTTYICDVWKV-G-------LRLERN-QSGIIGREEIKNKVDQVLGDQNFKARALKL 427 (457)
Q Consensus 358 ~~eal~~GvP~l~~P-~~~DQ~~na~~v~~~lG~-g-------~~l~~~-~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l 427 (457)
+.|+..+|+|||++= ...=.+..|+++.+ ... | ..+-++ -++..+++.|.+++..+++|+..++..+..
T Consensus 272 TLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk-~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~~~~~~~~~ 350 (373)
T PF02684_consen 272 TLEAALLGVPMVVAYKVSPLTYFIAKRLVK-VKYISLPNIIAGREVVPELIQEDATPENIAAELLELLENPEKRKKQKEL 350 (373)
T ss_pred HHHHHHhCCCEEEEEcCcHHHHHHHHHhhc-CCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 789999999997752 22223445555544 231 1 011100 036689999999999999999777777777
Q ss_pred HHHHHhhhhcCCChHHHH
Q 012744 428 KEKALSSVREGGSSNKAI 445 (457)
Q Consensus 428 ~~~~~~~~~~~g~~~~~~ 445 (457)
.+.+++....|.++..+.
T Consensus 351 ~~~~~~~~~~~~~~~~~~ 368 (373)
T PF02684_consen 351 FREIRQLLGPGASSRAAQ 368 (373)
T ss_pred HHHHHHhhhhccCCHHHH
Confidence 777777666666665443
No 92
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.68 E-value=1.7e-05 Score=76.44 Aligned_cols=110 Identities=15% Similarity=0.187 Sum_probs=67.7
Q ss_pred cCCceeecCC--Cch---hhccCCCccceeeccC----cchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeec
Q 012744 326 AARGQMISWS--PQQ---KVLTHPSISCFMSHCG----WNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLER 396 (457)
Q Consensus 326 ~~nv~~~~~~--pq~---~ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~ 396 (457)
.+++.+.++. ++. .+++.+++ ++.... -.++.||+++|+|+|+..... ....+... ..|...+
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i~~~-~~g~~~~- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQIEDG-ETGFLVD- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhcccC-CceEEeC-
Confidence 3567777776 432 57888888 886442 349999999999999875432 33345542 5666542
Q ss_pred cCCCccCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 012744 397 NQSGIIGREEIKNKVDQVLGDQNFKARALKLKEKALSSVREGGSSNKAIQNFVQSI 452 (457)
Q Consensus 397 ~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 452 (457)
+.++++++|.++++|++.++...+ ..++.+.+.-+-...++++++-+
T Consensus 323 ------~~~~~a~~i~~ll~~~~~~~~~~~---~a~~~~~~~~s~~~~~~~~~~~~ 369 (372)
T cd03792 323 ------TVEEAAVRILYLLRDPELRRKMGA---NAREHVRENFLITRHLKDYLYLI 369 (372)
T ss_pred ------CcHHHHHHHHHHHcCHHHHHHHHH---HHHHHHHHHcCHHHHHHHHHHHH
Confidence 456788899999998765543322 22222222345455555555544
No 93
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.64 E-value=4.9e-05 Score=73.85 Aligned_cols=73 Identities=10% Similarity=0.128 Sum_probs=52.3
Q ss_pred eecCCCchhhccCCCccceeeccC----cchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCHHH
Q 012744 331 MISWSPQQKVLTHPSISCFMSHCG----WNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREE 406 (457)
Q Consensus 331 ~~~~~pq~~ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~ 406 (457)
+.++.+..+++..+|+ ||.-+- .+++.||+++|+|+|+.-... + ..+.+. +.|... -+.++
T Consensus 288 f~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~~-~ng~~~-------~~~~~ 352 (462)
T PLN02846 288 YPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQF-PNCRTY-------DDGKG 352 (462)
T ss_pred ECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeecC-CceEec-------CCHHH
Confidence 3466666679999988 988743 478999999999999875433 2 333432 455444 26789
Q ss_pred HHHHHHHHhCCH
Q 012744 407 IKNKVDQVLGDQ 418 (457)
Q Consensus 407 l~~~i~~~l~~~ 418 (457)
+.+++.++|.++
T Consensus 353 ~a~ai~~~l~~~ 364 (462)
T PLN02846 353 FVRATLKALAEE 364 (462)
T ss_pred HHHHHHHHHccC
Confidence 999999999854
No 94
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.58 E-value=2.1e-05 Score=76.40 Aligned_cols=83 Identities=12% Similarity=0.086 Sum_probs=60.2
Q ss_pred cCCceeecCCCch-hhccCCCcccee--ec--cCc-chhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCC
Q 012744 326 AARGQMISWSPQQ-KVLTHPSISCFM--SH--CGW-NSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQS 399 (457)
Q Consensus 326 ~~nv~~~~~~pq~-~ll~~~~~~~~I--~H--gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~ 399 (457)
..+|.+.+++++. .++..+++ +| ++ .|. +.+.||+++|+|+|+.+...+.. ... -|.|..+.
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~-~~~g~lv~---- 346 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DAL-PGAELLVA---- 346 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----ccc-CCcceEeC----
Confidence 4678888999864 68899998 76 32 354 46999999999999987543221 122 26676652
Q ss_pred CccCHHHHHHHHHHHhCCHHHHH
Q 012744 400 GIIGREEIKNKVDQVLGDQNFKA 422 (457)
Q Consensus 400 ~~~~~~~l~~~i~~~l~~~~~~~ 422 (457)
-+.++++++|.++++|++.++
T Consensus 347 --~~~~~la~ai~~ll~~~~~~~ 367 (397)
T TIGR03087 347 --ADPADFAAAILALLANPAERE 367 (397)
T ss_pred --CCHHHHHHHHHHHHcCHHHHH
Confidence 378999999999999986443
No 95
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.58 E-value=9.7e-05 Score=71.85 Aligned_cols=113 Identities=12% Similarity=0.153 Sum_probs=75.6
Q ss_pred cCCceeecCCCch---hhccCCCccceeec---------cCc-chhhhhhhcCCceeccccccchhhhHHhhhhhhceeE
Q 012744 326 AARGQMISWSPQQ---KVLTHPSISCFMSH---------CGW-NSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGL 392 (457)
Q Consensus 326 ~~nv~~~~~~pq~---~ll~~~~~~~~I~H---------gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~ 392 (457)
.+++.+.+|+|+. +++..+++ +|.- -|. +++.||+++|+|+|+..... ....+.+. ..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v~~~-~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELVEAD-KSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhhcCC-CceE
Confidence 4678889999976 47889998 7753 244 57899999999999875432 44455553 5777
Q ss_pred EeeccCCCccCHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHh
Q 012744 393 RLERNQSGIIGREEIKNKVDQVLG-DQNFKARALKLKEKALSSVREGGSSNKAIQNFVQSIK 453 (457)
Q Consensus 393 ~l~~~~~~~~~~~~l~~~i~~~l~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 453 (457)
.++. -+.++++++|.++++ |++.+ +++++..++.+.+.-+.....+++.+-+.
T Consensus 351 lv~~-----~d~~~la~ai~~l~~~d~~~~---~~~~~~ar~~v~~~f~~~~~~~~l~~~~~ 404 (406)
T PRK15427 351 LVPE-----NDAQALAQRLAAFSQLDTDEL---APVVKRAREKVETDFNQQVINRELASLLQ 404 (406)
T ss_pred EeCC-----CCHHHHHHHHHHHHhCCHHHH---HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 7642 478999999999998 87533 23333333333334555555556655443
No 96
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.53 E-value=8e-05 Score=72.76 Aligned_cols=80 Identities=14% Similarity=0.101 Sum_probs=55.8
Q ss_pred cCCceeecCCCch---hhccCCCccceeecc---C-cchhhhhhhcCCceeccccccchhhhHHhhh---hhhceeEEee
Q 012744 326 AARGQMISWSPQQ---KVLTHPSISCFMSHC---G-WNSTTEGVSNGVPFLCWPFFADQFMNTTYIC---DVWKVGLRLE 395 (457)
Q Consensus 326 ~~nv~~~~~~pq~---~ll~~~~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~---~~lG~g~~l~ 395 (457)
.++|.+.+++|+. .+|..+++ +|+-. | .-++.||+++|+|+|+.-.... ....+. .. ..|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp---~~~iv~~~~~g-~~G~l~- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGP---LLDIVVPWDGG-PTGFLA- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCC---chheeeccCCC-CceEEe-
Confidence 4688888999875 58888998 66422 2 2488999999999997653321 111222 32 566654
Q ss_pred ccCCCccCHHHHHHHHHHHhCCH
Q 012744 396 RNQSGIIGREEIKNKVDQVLGDQ 418 (457)
Q Consensus 396 ~~~~~~~~~~~l~~~i~~~l~~~ 418 (457)
. +.++++++|.++++++
T Consensus 377 ----~--d~~~la~ai~~ll~~~ 393 (419)
T cd03806 377 ----S--TAEEYAEAIEKILSLS 393 (419)
T ss_pred ----C--CHHHHHHHHHHHHhCC
Confidence 1 7899999999999865
No 97
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.51 E-value=2.2e-06 Score=80.91 Aligned_cols=136 Identities=15% Similarity=0.145 Sum_probs=79.8
Q ss_pred CCCeEEEEEeCCcccCC-H---HHHHHHHHHHhhc-CCcEEEEEcCCCCCCCcCCCchhHHHHhc--CCceeecCCCc--
Q 012744 267 QANSVIYVAFGSHTVLE-Q---NQFQELALGLEIC-NRSFLWVVRPDITNDANDAYPEGFRERVA--ARGQMISWSPQ-- 337 (457)
Q Consensus 267 ~~~~~v~vs~Gs~~~~~-~---~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~nv~~~~~~pq-- 337 (457)
.+++.+++++=..+... + ..+..+++++... +.++||...+. ......+.+... +|++++.-+++
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~------p~~~~~i~~~l~~~~~v~~~~~l~~~~ 251 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNN------PRGSDIIIEKLKKYDNVRLIEPLGYEE 251 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-------HHHHHHHHHHHTT-TTEEEE----HHH
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCC------chHHHHHHHHhcccCCEEEECCCCHHH
Confidence 55679999985554444 3 3455667777555 77889888744 111122333222 58888866665
Q ss_pred -hhhccCCCccceeeccCcchhh-hhhhcCCceeccccccchhhhHHhhhhh-hceeEEeeccCCCccCHHHHHHHHHHH
Q 012744 338 -QKVLTHPSISCFMSHCGWNSTT-EGVSNGVPFLCWPFFADQFMNTTYICDV-WKVGLRLERNQSGIIGREEIKNKVDQV 414 (457)
Q Consensus 338 -~~ll~~~~~~~~I~HgG~~s~~-eal~~GvP~l~~P~~~DQ~~na~~v~~~-lG~g~~l~~~~~~~~~~~~l~~~i~~~ 414 (457)
..+|.++++ +|+-.| ++. ||.++|+|+|.+ .++..|-+-+ .|..+.+ + .+.++|.+++.++
T Consensus 252 ~l~ll~~a~~--vvgdSs--GI~eEa~~lg~P~v~i------R~~geRqe~r~~~~nvlv-----~-~~~~~I~~ai~~~ 315 (346)
T PF02350_consen 252 YLSLLKNADL--VVGDSS--GIQEEAPSLGKPVVNI------RDSGERQEGRERGSNVLV-----G-TDPEAIIQAIEKA 315 (346)
T ss_dssp HHHHHHHESE--EEESSH--HHHHHGGGGT--EEEC------SSS-S-HHHHHTTSEEEE-----T-SSHHHHHHHHHHH
T ss_pred HHHHHhcceE--EEEcCc--cHHHHHHHhCCeEEEe------cCCCCCHHHHhhcceEEe-----C-CCHHHHHHHHHHH
Confidence 469999999 999999 566 999999999998 2222222111 1444443 2 6899999999999
Q ss_pred hCCHHHHHHH
Q 012744 415 LGDQNFKARA 424 (457)
Q Consensus 415 l~~~~~~~~a 424 (457)
+++..+.++.
T Consensus 316 l~~~~~~~~~ 325 (346)
T PF02350_consen 316 LSDKDFYRKL 325 (346)
T ss_dssp HH-HHHHHHH
T ss_pred HhChHHHHhh
Confidence 9874444433
No 98
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.47 E-value=0.00076 Score=69.22 Aligned_cols=92 Identities=17% Similarity=0.154 Sum_probs=63.3
Q ss_pred cCCceeecCCCch-hhccCCCccceee---ccCc-chhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCCC
Q 012744 326 AARGQMISWSPQQ-KVLTHPSISCFMS---HCGW-NSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSG 400 (457)
Q Consensus 326 ~~nv~~~~~~pq~-~ll~~~~~~~~I~---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~ 400 (457)
.++|.+.+|.++. .++..+++ +|. +.|. +++.||+.+|+|+|+.... .....|.+. ..|..++. +
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~dg-~~GlLv~~---~ 642 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQEG-VTGLTLPA---D 642 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHccCC-CCEEEeCC---C
Confidence 4678888988753 68999998 775 4554 7999999999999987643 244556553 46888764 4
Q ss_pred ccCHHHHHHHHHHHhC----CHHHHHHHHHH
Q 012744 401 IIGREEIKNKVDQVLG----DQNFKARALKL 427 (457)
Q Consensus 401 ~~~~~~l~~~i~~~l~----~~~~~~~a~~l 427 (457)
+.+.+++.+++.+++. ++.+++++++.
T Consensus 643 d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~ 673 (694)
T PRK15179 643 TVTAPDVAEALARIHDMCAADPGIARKAADW 673 (694)
T ss_pred CCChHHHHHHHHHHHhChhccHHHHHHHHHH
Confidence 4566677777766654 55666555443
No 99
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.45 E-value=7.7e-05 Score=71.25 Aligned_cols=133 Identities=18% Similarity=0.164 Sum_probs=80.8
Q ss_pred CeEEEEEeCCcc---cCCHHHHHHHHHHHhhcCCcEEEEEcCCCCCCCcCCCchhHHHHh--cCCceeecCCCc---hhh
Q 012744 269 NSVIYVAFGSHT---VLEQNQFQELALGLEICNRSFLWVVRPDITNDANDAYPEGFRERV--AARGQMISWSPQ---QKV 340 (457)
Q Consensus 269 ~~~v~vs~Gs~~---~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~nv~~~~~~pq---~~l 340 (457)
++.|++++=... ....+.+..+++++...+.+++++...... ....+.+.+.+.. .+|+.+.+-+++ ..+
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p--~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~L 278 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADA--GSRIINEAIEEYVNEHPNFRLFKSLGQERYLSL 278 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCC--CchHHHHHHHHHhcCCCCEEEECCCChHHHHHH
Confidence 458778775432 234577999999998777666666543200 0001111122212 367888876654 469
Q ss_pred ccCCCccceeeccCcchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCCHHH
Q 012744 341 LTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGDQNF 420 (457)
Q Consensus 341 l~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~~~~ 420 (457)
+.+|++ +|+-++.+- .||...|+|+|.+- +-+ .- .+. |..+.+ -..++++|.+++.+++ ++.+
T Consensus 279 l~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~---e~-~~~-g~nvl~-----vg~~~~~I~~a~~~~~-~~~~ 341 (365)
T TIGR03568 279 LKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ---KG-RLR-ADSVID-----VDPDKEEIVKAIEKLL-DPAF 341 (365)
T ss_pred HHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc---hh-hhh-cCeEEE-----eCCCHHHHHHHHHHHh-ChHH
Confidence 999999 999886555 89999999999763 210 11 121 322221 1257899999999965 4443
No 100
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.45 E-value=1.6e-05 Score=75.89 Aligned_cols=133 Identities=9% Similarity=0.136 Sum_probs=89.4
Q ss_pred EEEEeCCcccCCHHHHHHHHHHHhhcCCcEEEEEcCCCCCCCcCCCchhHHHHhcCCceeecCCCch---hhccCCCccc
Q 012744 272 IYVAFGSHTVLEQNQFQELALGLEICNRSFLWVVRPDITNDANDAYPEGFRERVAARGQMISWSPQQ---KVLTHPSISC 348 (457)
Q Consensus 272 v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~---~ll~~~~~~~ 348 (457)
.++..|... +.+.+..+++++...+.+++++..+. ..+.+.+...+||.+.+++|+. .++..+++
T Consensus 197 ~il~~G~~~--~~K~~~~li~a~~~~~~~l~ivG~g~--------~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~-- 264 (351)
T cd03804 197 YYLSVGRLV--PYKRIDLAIEAFNKLGKRLVVIGDGP--------ELDRLRAKAGPNVTFLGRVSDEELRDLYARARA-- 264 (351)
T ss_pred EEEEEEcCc--cccChHHHHHHHHHCCCcEEEEECCh--------hHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCE--
Confidence 345566653 33446667788877777776666543 1223333457899999999985 57889998
Q ss_pred eee--ccCc-chhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCCH-HHHHHH
Q 012744 349 FMS--HCGW-NSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGDQ-NFKARA 424 (457)
Q Consensus 349 ~I~--HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~~-~~~~~a 424 (457)
+|. .-|. .++.||+++|+|+|+..... ....+.+. +.|..+.. -+.++++++|..+++|+ ..++++
T Consensus 265 ~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~-~~G~~~~~-----~~~~~la~~i~~l~~~~~~~~~~~ 334 (351)
T cd03804 265 FLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDG-VTGILFEE-----QTVESLAAAVERFEKNEDFDPQAI 334 (351)
T ss_pred EEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCC-CCEEEeCC-----CCHHHHHHHHHHHHhCcccCHHHH
Confidence 664 3333 46789999999999876433 34445553 67887743 47889999999999987 344443
Q ss_pred HH
Q 012744 425 LK 426 (457)
Q Consensus 425 ~~ 426 (457)
++
T Consensus 335 ~~ 336 (351)
T cd03804 335 RA 336 (351)
T ss_pred HH
Confidence 33
No 101
>PLN00142 sucrose synthase
Probab=98.45 E-value=0.00029 Score=72.53 Aligned_cols=85 Identities=14% Similarity=0.174 Sum_probs=53.8
Q ss_pred CCceeecC----CCchhhcc----CCCccceeec---cCc-chhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEe
Q 012744 327 ARGQMISW----SPQQKVLT----HPSISCFMSH---CGW-NSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRL 394 (457)
Q Consensus 327 ~nv~~~~~----~pq~~ll~----~~~~~~~I~H---gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l 394 (457)
++|...+. ++..++.. .+++ ||.- -|. .++.||+++|+|+|+.... -....|... ..|..+
T Consensus 642 ~~V~flG~~~~~~~~~eLyr~iadaaDV--fVlPS~~EgFGLvvLEAMA~GlPVVATdvG----G~~EIV~dG-~tG~LV 714 (815)
T PLN00142 642 GQFRWIAAQTNRVRNGELYRYIADTKGA--FVQPALYEAFGLTVVEAMTCGLPTFATCQG----GPAEIIVDG-VSGFHI 714 (815)
T ss_pred CcEEEcCCcCCcccHHHHHHHHHhhCCE--EEeCCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHhcCC-CcEEEe
Confidence 56655443 33344443 3455 7754 344 4899999999999986543 355566663 568777
Q ss_pred eccCCCccCHHHHHHHHHHH----hCCHHHHHH
Q 012744 395 ERNQSGIIGREEIKNKVDQV----LGDQNFKAR 423 (457)
Q Consensus 395 ~~~~~~~~~~~~l~~~i~~~----l~~~~~~~~ 423 (457)
+. -+.++++++|.++ +.|++.+++
T Consensus 715 ~P-----~D~eaLA~aI~~lLekLl~Dp~lr~~ 742 (815)
T PLN00142 715 DP-----YHGDEAANKIADFFEKCKEDPSYWNK 742 (815)
T ss_pred CC-----CCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 53 4678888887654 567765544
No 102
>PLN02949 transferase, transferring glycosyl groups
Probab=98.39 E-value=0.0014 Score=64.48 Aligned_cols=80 Identities=13% Similarity=0.039 Sum_probs=52.4
Q ss_pred cCCceeecCCCch---hhccCCCccceee---ccCc-chhhhhhhcCCceeccccccchhhhHHhhhhh-hc-eeEEeec
Q 012744 326 AARGQMISWSPQQ---KVLTHPSISCFMS---HCGW-NSTTEGVSNGVPFLCWPFFADQFMNTTYICDV-WK-VGLRLER 396 (457)
Q Consensus 326 ~~nv~~~~~~pq~---~ll~~~~~~~~I~---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~-lG-~g~~l~~ 396 (457)
.++|.+.+++|+. ++|..+++ +|+ +-|. .++.||+++|+|+|+....+- ....+.+. -| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp---~~eIV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGP---KMDIVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCC---cceeeecCCCCcccccC--
Confidence 5788888999865 47888888 773 2233 379999999999998764320 00011110 01 23222
Q ss_pred cCCCccCHHHHHHHHHHHhCC
Q 012744 397 NQSGIIGREEIKNKVDQVLGD 417 (457)
Q Consensus 397 ~~~~~~~~~~l~~~i~~~l~~ 417 (457)
-+.++++++|.+++++
T Consensus 407 -----~~~~~la~ai~~ll~~ 422 (463)
T PLN02949 407 -----TTVEEYADAILEVLRM 422 (463)
T ss_pred -----CCHHHHHHHHHHHHhC
Confidence 1789999999999984
No 103
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.37 E-value=2.6e-06 Score=66.72 Aligned_cols=114 Identities=12% Similarity=0.146 Sum_probs=75.6
Q ss_pred EEEEEeCCcccCCHH----HHHHHHHHHhhcCC-cEEEEEcCCCCCCCcCCCchhHHHHh-cCCcee--ecCCCc-hhhc
Q 012744 271 VIYVAFGSHTVLEQN----QFQELALGLEICNR-SFLWVVRPDITNDANDAYPEGFRERV-AARGQM--ISWSPQ-QKVL 341 (457)
Q Consensus 271 ~v~vs~Gs~~~~~~~----~~~~~~~a~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~-~~nv~~--~~~~pq-~~ll 341 (457)
.+||+-||.. ++.- .-.+.++.+.+.|. +.|+..+... ...++...+.. .+...+ .+|-|- .+..
T Consensus 5 ~vFVTVGtT~-Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~-----~~~~d~~~~~~k~~gl~id~y~f~psl~e~I 78 (170)
T KOG3349|consen 5 TVFVTVGTTS-FDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQ-----PFFGDPIDLIRKNGGLTIDGYDFSPSLTEDI 78 (170)
T ss_pred EEEEEecccc-HHHHHHHHcCHHHHHHHHHcCccEEEEEecCCc-----cCCCCHHHhhcccCCeEEEEEecCccHHHHH
Confidence 7999999954 3321 13346667777776 4556665431 11222222111 122223 377886 5666
Q ss_pred cCCCccceeeccCcchhhhhhhcCCceecccc----ccchhhhHHhhhhhhceeEE
Q 012744 342 THPSISCFMSHCGWNSTTEGVSNGVPFLCWPF----FADQFMNTTYICDVWKVGLR 393 (457)
Q Consensus 342 ~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~----~~DQ~~na~~v~~~lG~g~~ 393 (457)
+.+++ +|+|+|+||+.|.|..|+|.|+++- ...|-.-|..++++ |.=..
T Consensus 79 ~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~e-gyL~~ 131 (170)
T KOG3349|consen 79 RSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEE-GYLYY 131 (170)
T ss_pred hhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhc-CcEEE
Confidence 67888 9999999999999999999999995 45799999988884 65433
No 104
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.35 E-value=0.00033 Score=67.42 Aligned_cols=179 Identities=13% Similarity=0.102 Sum_probs=93.7
Q ss_pred hhhcCcEEEEcCcccccchhhccCCceeeeCcccCCCCCCCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCccc-CCHH
Q 012744 207 ATRAADFQLCNSTYELEGGAFSMIPELLPIGPLLASNRLGNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTV-LEQN 285 (457)
Q Consensus 207 ~~~~~~~~l~~s~~~le~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~-~~~~ 285 (457)
.+..+|.+++.|....+.- ....+++..++.-.....-... ....... +.+...+ ..+++..|++.. .+.+
T Consensus 150 ~~~~ad~vi~~S~~l~~~~-~~~~~~i~~i~ngvd~~~f~~~----~~~~~~~-~~~~~~~--~~~i~y~G~l~~~~d~~ 221 (373)
T cd04950 150 LLKRADLVFTTSPSLYEAK-RRLNPNVVLVPNGVDYEHFAAA----RDPPPPP-ADLAALP--RPVIGYYGAIAEWLDLE 221 (373)
T ss_pred HHHhCCEEEECCHHHHHHH-hhCCCCEEEcccccCHHHhhcc----cccCCCh-hHHhcCC--CCEEEEEeccccccCHH
Confidence 3477899888887655432 3344566665533322111000 0000000 1111112 245555687753 3333
Q ss_pred HHHHHHHHHhhcCCcEEEEEcCCCCCCCcCCCchhHHHHhcCCceeecCCCch---hhccCCCccceee--------ccC
Q 012744 286 QFQELALGLEICNRSFLWVVRPDITNDANDAYPEGFRERVAARGQMISWSPQQ---KVLTHPSISCFMS--------HCG 354 (457)
Q Consensus 286 ~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~---~ll~~~~~~~~I~--------HgG 354 (457)
.+..+++ ...+..++++..++. ... ...+ ...+||.+.+++|+. ..+.++++ +|. .++
T Consensus 222 ll~~la~--~~p~~~~vliG~~~~----~~~-~~~~--~~~~nV~~~G~~~~~~l~~~l~~~Dv--~l~P~~~~~~~~~~ 290 (373)
T cd04950 222 LLEALAK--ARPDWSFVLIGPVDV----SID-PSAL--LRLPNVHYLGPKPYKELPAYLAGFDV--AILPFRLNELTRAT 290 (373)
T ss_pred HHHHHHH--HCCCCEEEEECCCcC----ccC-hhHh--ccCCCEEEeCCCCHHHHHHHHHhCCE--EecCCccchhhhcC
Confidence 3433333 223566665554310 000 0111 113789999999976 47888998 543 223
Q ss_pred c-chhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCCH
Q 012744 355 W-NSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGDQ 418 (457)
Q Consensus 355 ~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~~ 418 (457)
. +.+.|++++|+|+|+.+. ...+.. +-|..+. . -+.+++.++|.+++.++
T Consensus 291 ~P~Kl~EylA~G~PVVat~~-------~~~~~~--~~~~~~~----~-~d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 291 SPLKLFEYLAAGKPVVATPL-------PEVRRY--EDEVVLI----A-DDPEEFVAAIEKALLED 341 (373)
T ss_pred CcchHHHHhccCCCEEecCc-------HHHHhh--cCcEEEe----C-CCHHHHHHHHHHHHhcC
Confidence 2 458999999999998753 222222 3233332 1 27999999999977554
No 105
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.31 E-value=0.00063 Score=67.76 Aligned_cols=129 Identities=10% Similarity=0.036 Sum_probs=74.4
Q ss_pred EEEEEeCCccc-CCHHHHHHHHHHHhhcCCcEEEEEcCCCCCCCcCCCchhHH---HHhcCCceeecCCCch---hhccC
Q 012744 271 VIYVAFGSHTV-LEQNQFQELALGLEICNRSFLWVVRPDITNDANDAYPEGFR---ERVAARGQMISWSPQQ---KVLTH 343 (457)
Q Consensus 271 ~v~vs~Gs~~~-~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~nv~~~~~~pq~---~ll~~ 343 (457)
.+++..|.... ...+.+.+.+..+.+.+.+++++..++ ....+.+. ++.+.++.+....+.. .+++.
T Consensus 292 ~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~------~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 365 (473)
T TIGR02095 292 PLFGVISRLTQQKGVDLLLAALPELLELGGQLVVLGTGD------PELEEALRELAERYPGNVRVIIGYDEALAHLIYAG 365 (473)
T ss_pred CEEEEEecCccccChHHHHHHHHHHHHcCcEEEEECCCC------HHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHh
Confidence 56666776642 223333344444434456666555432 11122222 2345566665444543 47888
Q ss_pred CCccceeecc---Ccc-hhhhhhhcCCceeccccccchhhhHHhhhh-----hhceeEEeeccCCCccCHHHHHHHHHHH
Q 012744 344 PSISCFMSHC---GWN-STTEGVSNGVPFLCWPFFADQFMNTTYICD-----VWKVGLRLERNQSGIIGREEIKNKVDQV 414 (457)
Q Consensus 344 ~~~~~~I~Hg---G~~-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~-----~lG~g~~l~~~~~~~~~~~~l~~~i~~~ 414 (457)
+|+ ++.-. |.| +.+||+++|+|.|+..... ....+.+ .-+.|..+. .-++++++++|.++
T Consensus 366 aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v~~~~~~~~~~~G~l~~-----~~d~~~la~~i~~~ 434 (473)
T TIGR02095 366 ADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTVVDGDPEAESGTGFLFE-----EYDPGALLAALSRA 434 (473)
T ss_pred CCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceEecCCCCCCCCceEEeC-----CCCHHHHHHHHHHH
Confidence 888 77542 443 7889999999999875532 1122222 016777774 25789999999999
Q ss_pred hC
Q 012744 415 LG 416 (457)
Q Consensus 415 l~ 416 (457)
+.
T Consensus 435 l~ 436 (473)
T TIGR02095 435 LR 436 (473)
T ss_pred HH
Confidence 87
No 106
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.28 E-value=0.00068 Score=67.33 Aligned_cols=131 Identities=11% Similarity=0.147 Sum_probs=73.2
Q ss_pred eEEEEEeCCcccCCHHHHHHHHHHH---hhcCCcEEEEEcCCCCCCCcCCCchhHH---HHhcCCcee-ecCCCch--hh
Q 012744 270 SVIYVAFGSHTVLEQNQFQELALGL---EICNRSFLWVVRPDITNDANDAYPEGFR---ERVAARGQM-ISWSPQQ--KV 340 (457)
Q Consensus 270 ~~v~vs~Gs~~~~~~~~~~~~~~a~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~nv~~-~~~~pq~--~l 340 (457)
..+++..|.... .+.+..+++++ ...+.+++++..++ ....+.+. ++.+.++.+ .+|-... .+
T Consensus 282 ~~~i~~vGRl~~--~KG~~~li~a~~~l~~~~~~lvivG~g~------~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~ 353 (466)
T PRK00654 282 APLFAMVSRLTE--QKGLDLVLEALPELLEQGGQLVLLGTGD------PELEEAFRALAARYPGKVGVQIGYDEALAHRI 353 (466)
T ss_pred CcEEEEeecccc--ccChHHHHHHHHHHHhcCCEEEEEecCc------HHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHH
Confidence 356666776532 23333444444 33366776665432 11112222 233455553 4663222 57
Q ss_pred ccCCCccceeec---cCcc-hhhhhhhcCCceecccccc--chhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHH
Q 012744 341 LTHPSISCFMSH---CGWN-STTEGVSNGVPFLCWPFFA--DQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQV 414 (457)
Q Consensus 341 l~~~~~~~~I~H---gG~~-s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~ 414 (457)
++.+|+ +|.- -|.| +.+||+++|+|.|+..... |.-.+...-.+. +.|..++. -++++++++|.++
T Consensus 354 ~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~~-----~d~~~la~~i~~~ 425 (466)
T PRK00654 354 YAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFDD-----FNAEDLLRALRRA 425 (466)
T ss_pred HhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeCC-----CCHHHHHHHHHHH
Confidence 888998 7754 3443 8889999999998865421 211111000222 67877743 4789999999998
Q ss_pred hC
Q 012744 415 LG 416 (457)
Q Consensus 415 l~ 416 (457)
++
T Consensus 426 l~ 427 (466)
T PRK00654 426 LE 427 (466)
T ss_pred HH
Confidence 86
No 107
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.23 E-value=0.00076 Score=67.31 Aligned_cols=132 Identities=13% Similarity=0.130 Sum_probs=73.5
Q ss_pred EEEEEeCCccc-CCHHHHHHHHHHHhhcCCcEEEEEcCCCCCCCcCCCchhHHH---HhcCCceee-cCCCch--hhccC
Q 012744 271 VIYVAFGSHTV-LEQNQFQELALGLEICNRSFLWVVRPDITNDANDAYPEGFRE---RVAARGQMI-SWSPQQ--KVLTH 343 (457)
Q Consensus 271 ~v~vs~Gs~~~-~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~nv~~~-~~~pq~--~ll~~ 343 (457)
.+++..|.... ...+.+...+..+.+.+.+++++..++ ....+.+.+ +..+|+.+. ++.... .++..
T Consensus 297 ~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 370 (476)
T cd03791 297 PLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGD------PEYEEALRELAARYPGRVAVLIGYDEALAHLIYAG 370 (476)
T ss_pred CEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCC------HHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHh
Confidence 56666776642 223334444444444456666655433 111122222 224677654 444222 47888
Q ss_pred CCccceeecc---Cc-chhhhhhhcCCceecccccc--chhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhC
Q 012744 344 PSISCFMSHC---GW-NSTTEGVSNGVPFLCWPFFA--DQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLG 416 (457)
Q Consensus 344 ~~~~~~I~Hg---G~-~s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~ 416 (457)
+++ ++... |. .+.+||+++|+|+|+..... |.-.+...-.+. |.|..+.. -+.+++.++|.++++
T Consensus 371 aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~-~~G~~~~~-----~~~~~l~~~i~~~l~ 441 (476)
T cd03791 371 ADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGE-GTGFVFEG-----YNADALLAALRRALA 441 (476)
T ss_pred CCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCC-CCeEEeCC-----CCHHHHHHHHHHHHH
Confidence 888 77542 22 47789999999999876532 211111111122 57888853 478999999999885
No 108
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.15 E-value=0.0008 Score=62.32 Aligned_cols=219 Identities=15% Similarity=0.106 Sum_probs=118.4
Q ss_pred hcCcEEEEcCcccccchhhccCCceeeeC-cccCCCCCCCCCCCCCCCcchhhHHhccCCCCeEEEEEeCCcccCCH---
Q 012744 209 RAADFQLCNSTYELEGGAFSMIPELLPIG-PLLASNRLGNSAGYFLPEDSKCLEWLDQRQANSVIYVAFGSHTVLEQ--- 284 (457)
Q Consensus 209 ~~~~~~l~~s~~~le~~~~~~~~~~~~vG-pl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~--- 284 (457)
...|.+++--+++-++. ....-+..||| |+....+. .+..+++.+-+....+++++.+-.||..+-=.
T Consensus 135 ~~~D~lLailPFE~~~y-~k~g~~~~yVGHpl~d~i~~-------~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~ 206 (381)
T COG0763 135 KYVDHLLAILPFEPAFY-DKFGLPCTYVGHPLADEIPL-------LPDREAAREKLGIDADEKTLALLPGSRRSEIRRLL 206 (381)
T ss_pred HHhhHeeeecCCCHHHH-HhcCCCeEEeCChhhhhccc-------cccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHH
Confidence 44566776666665555 33333489999 55544332 13344455555555566799999999643111
Q ss_pred HHHHHHHHHHh-h-cCCcEEEEEcCCCCCCCcCCCchhHHHH-hcCCc-eeecCC-Cc--hhhccCCCccceeeccCcch
Q 012744 285 NQFQELALGLE-I-CNRSFLWVVRPDITNDANDAYPEGFRER-VAARG-QMISWS-PQ--QKVLTHPSISCFMSHCGWNS 357 (457)
Q Consensus 285 ~~~~~~~~a~~-~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~nv-~~~~~~-pq--~~ll~~~~~~~~I~HgG~~s 357 (457)
..+...++.+. + .+.+|++-+.+. .-+...+. ...++ ...-++ .+ .+.+..||+ .+.-+|- -
T Consensus 207 ~~f~~a~~~l~~~~~~~~~vlp~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~--al~aSGT-~ 275 (381)
T COG0763 207 PPFVQAAQELKARYPDLKFVLPLVNA--------KYRRIIEEALKWEVAGLSLILIDGEKRKAFAAADA--ALAASGT-A 275 (381)
T ss_pred HHHHHHHHHHHhhCCCceEEEecCcH--------HHHHHHHHHhhccccCceEEecCchHHHHHHHhhH--HHHhccH-H
Confidence 22333333332 2 246776666543 11111111 22222 122222 22 257778888 7777665 4
Q ss_pred hhhhhhcCCceeccccccc--hhhhHHhhhhhhc--------eeEEeecc-CCCccCHHHHHHHHHHHhCCH----HHHH
Q 012744 358 TTEGVSNGVPFLCWPFFAD--QFMNTTYICDVWK--------VGLRLERN-QSGIIGREEIKNKVDQVLGDQ----NFKA 422 (457)
Q Consensus 358 ~~eal~~GvP~l~~P~~~D--Q~~na~~v~~~lG--------~g~~l~~~-~~~~~~~~~l~~~i~~~l~~~----~~~~ 422 (457)
+.|+..+|+|||+.= -.+ -+.-|.+..+ +. +|..+-++ -....+++.|.+++..++.|+ .+++
T Consensus 276 tLE~aL~g~P~Vv~Y-k~~~it~~iak~lvk-~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~ 353 (381)
T COG0763 276 TLEAALAGTPMVVAY-KVKPITYFIAKRLVK-LPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRREALKE 353 (381)
T ss_pred HHHHHHhCCCEEEEE-eccHHHHHHHHHhcc-CCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHH
Confidence 689999999998652 111 1223333333 12 11111111 025578999999999999998 4555
Q ss_pred HHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 012744 423 RALKLKEKALSSVREGGSSNKAIQNFVQSI 452 (457)
Q Consensus 423 ~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 452 (457)
...++.+.++. ++++..+.+.+++.+
T Consensus 354 ~~~~l~~~l~~----~~~~e~aA~~vl~~~ 379 (381)
T COG0763 354 KFRELHQYLRE----DPASEIAAQAVLELL 379 (381)
T ss_pred HHHHHHHHHcC----CcHHHHHHHHHHHHh
Confidence 55556555553 556766666665544
No 109
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=98.08 E-value=0.00086 Score=66.72 Aligned_cols=99 Identities=15% Similarity=0.182 Sum_probs=63.8
Q ss_pred cCCceeecCCCchhhccCCCccceeec---cC-cchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeecc--CC
Q 012744 326 AARGQMISWSPQQKVLTHPSISCFMSH---CG-WNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERN--QS 399 (457)
Q Consensus 326 ~~nv~~~~~~pq~~ll~~~~~~~~I~H---gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~--~~ 399 (457)
.++|.+.++.+..+++..+++ +|.- -| ..++.||+++|+|+|+..... .+...++.. ..|..++.. +.
T Consensus 375 ~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI~~g-~nG~lv~~~~~~~ 448 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFIEDN-KNGYLIPIDEEED 448 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHccCC-CCEEEEeCCcccc
Confidence 356777888887889999998 7753 33 358999999999999865421 134455553 467766521 00
Q ss_pred CccC-HHHHHHHHHHHhCCH---HHHHHHHHHHHH
Q 012744 400 GIIG-REEIKNKVDQVLGDQ---NFKARALKLKEK 430 (457)
Q Consensus 400 ~~~~-~~~l~~~i~~~l~~~---~~~~~a~~l~~~ 430 (457)
+.-+ .++++++|.++++++ .+.+++.+.+++
T Consensus 449 d~~~~~~~la~~I~~ll~~~~~~~~~~~a~~~a~~ 483 (500)
T TIGR02918 449 DEDQIITALAEKIVEYFNSNDIDAFHEYSYQIAEG 483 (500)
T ss_pred chhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHh
Confidence 1112 788999999999644 234444444333
No 110
>PLN02501 digalactosyldiacylglycerol synthase
Probab=98.08 E-value=0.0013 Score=66.06 Aligned_cols=77 Identities=14% Similarity=0.150 Sum_probs=53.2
Q ss_pred ceeecCCCch-hhccCCCccceeecc---C-cchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCCCccC
Q 012744 329 GQMISWSPQQ-KVLTHPSISCFMSHC---G-WNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIG 403 (457)
Q Consensus 329 v~~~~~~pq~-~ll~~~~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~ 403 (457)
+.+.++.++. +++..+++ ||.-+ | ..++.||+++|+|+|+........ +.. |.+..+. -+
T Consensus 603 V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~--g~nGll~------~D 667 (794)
T PLN02501 603 LNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FRS--FPNCLTY------KT 667 (794)
T ss_pred EEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Eee--cCCeEec------CC
Confidence 4455666654 58999998 87643 2 468999999999999886654221 222 3232232 26
Q ss_pred HHHHHHHHHHHhCCHHH
Q 012744 404 REEIKNKVDQVLGDQNF 420 (457)
Q Consensus 404 ~~~l~~~i~~~l~~~~~ 420 (457)
.++++++|.+++.|+.-
T Consensus 668 ~EafAeAI~~LLsd~~~ 684 (794)
T PLN02501 668 SEDFVAKVKEALANEPQ 684 (794)
T ss_pred HHHHHHHHHHHHhCchh
Confidence 89999999999988753
No 111
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.00 E-value=0.0027 Score=59.03 Aligned_cols=328 Identities=16% Similarity=0.145 Sum_probs=169.4
Q ss_pred CCCCEEEEEcCCCCcChHHHHHHHHHHHhCC-CeEEEEeCCcch--hHHHhhhcCCCCCCCCeEEEecCC-CCCCCCCcc
Q 012744 1 MSSPHVVVIPNPEQGHVIPLLELSQNLAKHG-LRITFVNSEYNH--KRVLESLEGKNYIGEQIHLVSIPD-GMEPWDDRS 76 (457)
Q Consensus 1 m~~~~vl~~~~~~~GH~~p~~~la~~L~~~G-h~Vt~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 76 (457)
|.++|| ++.+|++=.+.-+.+|.+++.+.+ .+..++.+.-.. +......... ++.. |+ .+.-+....
T Consensus 1 m~~~Kv-~~I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~-----~i~~---pdy~L~i~~~~~ 71 (383)
T COG0381 1 MKMLKV-LTIFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELF-----GIRK---PDYDLNIMKPGQ 71 (383)
T ss_pred CCceEE-EEEEecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHh-----CCCC---CCcchhccccCC
Confidence 455555 455789999999999999999987 666666665544 3333221000 2221 11 111111222
Q ss_pred hHHHHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecC--Ccc-hHHHHHHHcCCceEEEechhhHHHHHHhhhhhhhh
Q 012744 77 DMRKLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADG--AAG-WAIEVAEKMKLRRAVVVITSAATVALTFSIPKLIE 153 (457)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~--~~~-~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~ 153 (457)
++....... -..+.+++++ .+||+|++-. ... +++.+|.+.+||+.-+-.+.-..
T Consensus 72 tl~~~t~~~----i~~~~~vl~~------~kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlRt~------------ 129 (383)
T COG0381 72 TLGEITGNI----IEGLSKVLEE------EKPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLRTG------------ 129 (383)
T ss_pred CHHHHHHHH----HHHHHHHHHh------hCCCEEEEeCCcchHHHHHHHHHHhCCceEEEecccccC------------
Confidence 233322222 2456777777 8999877654 222 56888899999998865443210
Q ss_pred ccCCCCCCCCccccccccCCCCCCCccccccccccCCcchhhHHHHHHHHHHHhhhcCcEEEEcCcccccchhhc-cCC-
Q 012744 154 DGVINSNGTPIKEQMIQLAPNMPAISTGELFWTGIGDLTMQKFFFDFMVKNMRATRAADFQLCNSTYELEGGAFS-MIP- 231 (457)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~-~~~- 231 (457)
+ .. +|... .+.... .-++..|+++--.-+.-.+. .++
T Consensus 130 ----~---------------------~~-~PEE~---------NR~l~~------~~S~~hfapte~ar~nLl~EG~~~~ 168 (383)
T COG0381 130 ----D---------------------LY-FPEEI---------NRRLTS------HLSDLHFAPTEIARKNLLREGVPEK 168 (383)
T ss_pred ----C---------------------CC-CcHHH---------HHHHHH------HhhhhhcCChHHHHHHHHHcCCCcc
Confidence 0 00 11000 000000 00111111111110000011 122
Q ss_pred ceeeeCcccCCCCCCCCCCCCCCCcchhhHH-hccCCCCeEEEEEeCCcccCCHHHHHHHHHHH----hhcCCcEEEEEc
Q 012744 232 ELLPIGPLLASNRLGNSAGYFLPEDSKCLEW-LDQRQANSVIYVAFGSHTVLEQNQFQELALGL----EICNRSFLWVVR 306 (457)
Q Consensus 232 ~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~----~~~~~~~i~~~~ 306 (457)
+++.+|-...+--... ......+..+... ++.. ++..+.+++=-..+.. +.+..+++++ +.. ..+.+++.
T Consensus 169 ~IfvtGnt~iDal~~~--~~~~~~~~~~~~~~~~~~-~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~-~~~~viyp 243 (383)
T COG0381 169 RIFVTGNTVIDALLNT--RDRVLEDSKILAKGLDDK-DKKYILVTAHRRENVG-EPLEEICEALREIAEEY-PDVIVIYP 243 (383)
T ss_pred ceEEeCChHHHHHHHH--HhhhccchhhHHhhhccc-cCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhC-CCceEEEe
Confidence 4566664333211000 0000112222221 2222 2338888765544444 4455565554 333 23444444
Q ss_pred CCCCCCCcCCCchhHHHHhc--CCceee---cCCCchhhccCCCccceeeccCcchhhhhhhcCCceeccccccchhhhH
Q 012744 307 PDITNDANDAYPEGFRERVA--ARGQMI---SWSPQQKVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPFFADQFMNT 381 (457)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~--~nv~~~---~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na 381 (457)
... ...+.+-..++.. .|+++. +|.+...++.++.+ ++|-.|. -.-||-..|+|++++=...|++.
T Consensus 244 ~H~----~~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~--iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE-- 314 (383)
T COG0381 244 VHP----RPRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFL--ILTDSGG-IQEEAPSLGKPVLVLRDTTERPE-- 314 (383)
T ss_pred CCC----ChhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceE--EEecCCc-hhhhHHhcCCcEEeeccCCCCcc--
Confidence 330 0111111112233 457765 67778889999998 9998874 45689999999999998888885
Q ss_pred HhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCCHHHHHH
Q 012744 382 TYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGDQNFKAR 423 (457)
Q Consensus 382 ~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 423 (457)
+ .+. |.-..+. .+.+.|.+++..++++++..++
T Consensus 315 -~-v~a-gt~~lvg------~~~~~i~~~~~~ll~~~~~~~~ 347 (383)
T COG0381 315 -G-VEA-GTNILVG------TDEENILDAATELLEDEEFYER 347 (383)
T ss_pred -c-eec-CceEEeC------ccHHHHHHHHHHHhhChHHHHH
Confidence 2 232 5554443 5789999999999999876554
No 112
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.00 E-value=0.0044 Score=61.76 Aligned_cols=87 Identities=10% Similarity=0.125 Sum_probs=61.4
Q ss_pred cCCceeecCCCchhhccCCCccceeecc----CcchhhhhhhcCCceeccccccchhhhHHhhhhh----h-ceeEEeec
Q 012744 326 AARGQMISWSPQQKVLTHPSISCFMSHC----GWNSTTEGVSNGVPFLCWPFFADQFMNTTYICDV----W-KVGLRLER 396 (457)
Q Consensus 326 ~~nv~~~~~~pq~~ll~~~~~~~~I~Hg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~----l-G~g~~l~~ 396 (457)
.+||.+.+...-.+++..+++ +|... --+++.||+++|+|+|+... ......+.+. + ..|..+..
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd~----g~~~elv~~~~~~~~g~~G~lv~~ 426 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVATDV----GSCRELIEGADDEALGPAGEVVPP 426 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEECCC----CChHHHhcCCcccccCCceEEECC
Confidence 467888785555678888888 76543 34689999999999998543 3344444441 1 26777642
Q ss_pred cCCCccCHHHHHHHHHHHhCCHHHHHH
Q 012744 397 NQSGIIGREEIKNKVDQVLGDQNFKAR 423 (457)
Q Consensus 397 ~~~~~~~~~~l~~~i~~~l~~~~~~~~ 423 (457)
-+.++++++|.++++|++.+++
T Consensus 427 -----~d~~~la~ai~~ll~~~~~~~~ 448 (475)
T cd03813 427 -----ADPEALARAILRLLKDPELRRA 448 (475)
T ss_pred -----CCHHHHHHHHHHHhcCHHHHHH
Confidence 5789999999999999865444
No 113
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.96 E-value=0.00052 Score=66.23 Aligned_cols=116 Identities=18% Similarity=0.288 Sum_probs=77.5
Q ss_pred hcCCceeecCCCch---hhccCCCccceeecc----Cc-chhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeec
Q 012744 325 VAARGQMISWSPQQ---KVLTHPSISCFMSHC----GW-NSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLER 396 (457)
Q Consensus 325 ~~~nv~~~~~~pq~---~ll~~~~~~~~I~Hg----G~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~ 396 (457)
...++.+.+++|+. ++++.+++ +|... |. .++.||+++|+|+|+..... +...+.+. ..|..+.
T Consensus 255 l~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg----~~Eiv~~~-~~G~~l~- 326 (380)
T PRK15484 255 IGDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKGG----ITEFVLEG-ITGYHLA- 326 (380)
T ss_pred cCCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCCC----cHhhcccC-CceEEEe-
Confidence 34678888999865 56999998 77533 32 57889999999999876532 44555553 5676553
Q ss_pred cCCCccCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcC
Q 012744 397 NQSGIIGREEIKNKVDQVLGDQNFKARALKLKEKALSSVREGGSSNKAIQNFVQSIKQW 455 (457)
Q Consensus 397 ~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 455 (457)
...+.++++++|.++++|++.+ ++++..++...+.-+-....+++.+.+..+
T Consensus 327 ---~~~d~~~la~~I~~ll~d~~~~----~~~~~ar~~~~~~fsw~~~a~~~~~~l~~~ 378 (380)
T PRK15484 327 ---EPMTSDSIISDINRTLADPELT----QIAEQAKDFVFSKYSWEGVTQRFEEQIHNW 378 (380)
T ss_pred ---CCCCHHHHHHHHHHHHcCHHHH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 2357999999999999998643 344444433333455555556666655443
No 114
>PLN02316 synthase/transferase
Probab=97.96 E-value=0.032 Score=59.46 Aligned_cols=114 Identities=5% Similarity=-0.011 Sum_probs=64.4
Q ss_pred cCCceeecCCCch---hhccCCCccceeecc---C-cchhhhhhhcCCceecccccc--chhhh-------HHhhhhhhc
Q 012744 326 AARGQMISWSPQQ---KVLTHPSISCFMSHC---G-WNSTTEGVSNGVPFLCWPFFA--DQFMN-------TTYICDVWK 389 (457)
Q Consensus 326 ~~nv~~~~~~pq~---~ll~~~~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~--DQ~~n-------a~~v~~~lG 389 (457)
+++|.+....+.. .+++.+|+ |+... | -.+.+||+++|+|.|+....+ |.-.. ++..-.. +
T Consensus 899 ~~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~-~ 975 (1036)
T PLN02316 899 HDRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLE-P 975 (1036)
T ss_pred CCeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccC-C
Confidence 3566665444443 58888888 88643 2 248999999999888765432 22111 1100011 4
Q ss_pred eeEEeeccCCCccCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHH
Q 012744 390 VGLRLERNQSGIIGREEIKNKVDQVLGDQNFKARALKLKEKALSSVREGGSSNKAIQNFV 449 (457)
Q Consensus 390 ~g~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 449 (457)
.|+.+. ..+++.|..+|.+++.+. .+....+++..++.+...-|-.+..+..+
T Consensus 976 tGflf~-----~~d~~aLa~AL~raL~~~--~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~ 1028 (1036)
T PLN02316 976 NGFSFD-----GADAAGVDYALNRAISAW--YDGRDWFNSLCKRVMEQDWSWNRPALDYM 1028 (1036)
T ss_pred ceEEeC-----CCCHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 677774 368899999999999642 23333344444443333333333333433
No 115
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.94 E-value=0.00069 Score=65.21 Aligned_cols=85 Identities=16% Similarity=0.148 Sum_probs=60.0
Q ss_pred cCCceeecCCCch-hhccCCCccceeec--cCcchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCCCcc
Q 012744 326 AARGQMISWSPQQ-KVLTHPSISCFMSH--CGWNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGII 402 (457)
Q Consensus 326 ~~nv~~~~~~pq~-~ll~~~~~~~~I~H--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~ 402 (457)
..++.+.++.++. .++..+++-...++ |...++.||+++|+|+|+..... .....+... ..|..++ .-
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~-~~G~lv~-----~~ 330 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDG-ENGYLVP-----KG 330 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccC-CCceEeC-----CC
Confidence 4567777777664 68999998333333 23468999999999999864331 133445553 6777774 25
Q ss_pred CHHHHHHHHHHHhCCHH
Q 012744 403 GREEIKNKVDQVLGDQN 419 (457)
Q Consensus 403 ~~~~l~~~i~~~l~~~~ 419 (457)
+.++++++|.+++.|++
T Consensus 331 d~~~la~~i~~ll~~~~ 347 (372)
T cd04949 331 DIEALAEAIIELLNDPK 347 (372)
T ss_pred cHHHHHHHHHHHHcCHH
Confidence 78999999999999974
No 116
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.91 E-value=0.00036 Score=67.98 Aligned_cols=111 Identities=14% Similarity=0.139 Sum_probs=75.6
Q ss_pred CCceeecCCCchh---hccCCCccceeeccC----cchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCC
Q 012744 327 ARGQMISWSPQQK---VLTHPSISCFMSHCG----WNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQS 399 (457)
Q Consensus 327 ~nv~~~~~~pq~~---ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~ 399 (457)
.+|.+.+|+++.+ ++..+++.++|...- -++++||+++|+|+|+.... .....+.+. +.|..+.
T Consensus 289 ~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vg----g~~e~i~~~-~~G~l~~---- 359 (407)
T cd04946 289 ISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVG----GTPEIVDNG-GNGLLLS---- 359 (407)
T ss_pred ceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCC----CcHHHhcCC-CcEEEeC----
Confidence 5677889999764 555544444776553 46899999999999986533 355566652 4888774
Q ss_pred CccCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHH
Q 012744 400 GIIGREEIKNKVDQVLGDQNFKARALKLKEKALSSVREGGSSNKAIQNFV 449 (457)
Q Consensus 400 ~~~~~~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 449 (457)
..-+.++++++|.++++|++.+ .++++..++.+.+.-+.....++|+
T Consensus 360 ~~~~~~~la~~I~~ll~~~~~~---~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 360 KDPTPNELVSSLSKFIDNEEEY---QTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred CCCCHHHHHHHHHHHHhCHHHH---HHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 3347899999999999987533 3455555555555666666666554
No 117
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.88 E-value=0.00014 Score=61.44 Aligned_cols=89 Identities=19% Similarity=0.260 Sum_probs=66.6
Q ss_pred hcCCceeecCCCc---hhhccCCCccceeec----cCcchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeecc
Q 012744 325 VAARGQMISWSPQ---QKVLTHPSISCFMSH----CGWNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERN 397 (457)
Q Consensus 325 ~~~nv~~~~~~pq---~~ll~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~ 397 (457)
...++.+.+++++ ..++..+++ +|+. |...++.||+.+|+|+|+. +...+...+.+. +.|..+..
T Consensus 71 ~~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~~~~-~~g~~~~~- 142 (172)
T PF00534_consen 71 LKENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEIINDG-VNGFLFDP- 142 (172)
T ss_dssp CGTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHSGTT-TSEEEEST-
T ss_pred cccccccccccccccccccccccee--ccccccccccccccccccccccceeec----cccCCceeeccc-cceEEeCC-
Confidence 3468888899983 368999998 8877 5667999999999999975 455566777773 77888852
Q ss_pred CCCccCHHHHHHHHHHHhCCHHHHHHHH
Q 012744 398 QSGIIGREEIKNKVDQVLGDQNFKARAL 425 (457)
Q Consensus 398 ~~~~~~~~~l~~~i~~~l~~~~~~~~a~ 425 (457)
.+.+++.++|.+++++++.+++..
T Consensus 143 ----~~~~~l~~~i~~~l~~~~~~~~l~ 166 (172)
T PF00534_consen 143 ----NDIEELADAIEKLLNDPELRQKLG 166 (172)
T ss_dssp ----TSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHCCHHHHHHHH
Confidence 399999999999999885444433
No 118
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.87 E-value=0.00019 Score=69.25 Aligned_cols=139 Identities=16% Similarity=0.159 Sum_probs=78.4
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHhhcCCcEEEEEcCCCCCCCcCCCchhHHHH------hcCCceeecCCCchh---
Q 012744 269 NSVIYVAFGSHTVLEQNQFQELALGLEICNRSFLWVVRPDITNDANDAYPEGFRER------VAARGQMISWSPQQK--- 339 (457)
Q Consensus 269 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~nv~~~~~~pq~~--- 339 (457)
..++|.+|....+..++.+..-.+.++..+...+|...... .-.+.+.+. .++++.+....|+.+
T Consensus 284 d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~------~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~ 357 (468)
T PF13844_consen 284 DAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPA------SGEARLRRRFAAHGVDPDRIIFSPVAPREEHLR 357 (468)
T ss_dssp SSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETST------THHHHHHHHHHHTTS-GGGEEEEE---HHHHHH
T ss_pred CceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCH------HHHHHHHHHHHHcCCChhhEEEcCCCCHHHHHH
Confidence 45999999999999999999999999889988888876431 111222221 236666677777654
Q ss_pred hccCCCcccee---eccCcchhhhhhhcCCceeccccccch-hhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHh
Q 012744 340 VLTHPSISCFM---SHCGWNSTTEGVSNGVPFLCWPFFADQ-FMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVL 415 (457)
Q Consensus 340 ll~~~~~~~~I---~HgG~~s~~eal~~GvP~l~~P~~~DQ-~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l 415 (457)
.+..+|+ ++ ..+|.+|++|||++|||+|.+|-..=. ..-|..+.. +|+...+. -+.++-.+.--++-
T Consensus 358 ~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~-lGl~ElIA------~s~~eYv~~Av~La 428 (468)
T PF13844_consen 358 RYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRA-LGLPELIA------DSEEEYVEIAVRLA 428 (468)
T ss_dssp HGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHH-HT-GGGB-------SSHHHHHHHHHHHH
T ss_pred HhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHH-cCCchhcC------CCHHHHHHHHHHHh
Confidence 4455665 54 568999999999999999999965333 333344444 68776654 24555555555666
Q ss_pred CCHHHHH
Q 012744 416 GDQNFKA 422 (457)
Q Consensus 416 ~~~~~~~ 422 (457)
.|+++++
T Consensus 429 ~D~~~l~ 435 (468)
T PF13844_consen 429 TDPERLR 435 (468)
T ss_dssp H-HHHHH
T ss_pred CCHHHHH
Confidence 6776543
No 119
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.74 E-value=0.036 Score=54.93 Aligned_cols=113 Identities=16% Similarity=0.160 Sum_probs=67.2
Q ss_pred cCCceeecCCCc-hhhccCCCccceeec---cC-cchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCCC
Q 012744 326 AARGQMISWSPQ-QKVLTHPSISCFMSH---CG-WNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSG 400 (457)
Q Consensus 326 ~~nv~~~~~~pq-~~ll~~~~~~~~I~H---gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~ 400 (457)
.++|.+.+|..+ ..+|..+++ ||.. -| -+++.||+++|+|+|+.... .+...+.+. ..|..++.
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdvG----G~~EiV~dG-~nG~LVp~---- 522 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPAG----GSAECFIEG-VSGFILDD---- 522 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCCC----CcHHHcccC-CcEEEECC----
Confidence 477888888654 368999999 8863 44 46999999999999977553 355666664 67887753
Q ss_pred ccCHHHHHHHH---HHHhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHh
Q 012744 401 IIGREEIKNKV---DQVLGDQNFKARALKLKEKALSSVREGGSSNKAIQNFVQSIK 453 (457)
Q Consensus 401 ~~~~~~l~~~i---~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 453 (457)
-+.+.+.+++ .++..+.. ....+++..++.+.+.-+...-++...+-+.
T Consensus 523 -~D~~aLa~ai~lA~aL~~ll~---~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~ 574 (578)
T PRK15490 523 -AQTVNLDQACRYAEKLVNLWR---SRTGICQQTQSFLQERFTVEHMVGTFVKTIA 574 (578)
T ss_pred -CChhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 2334444443 22222211 1222333333333335566666666555443
No 120
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.73 E-value=0.0032 Score=55.43 Aligned_cols=48 Identities=13% Similarity=0.088 Sum_probs=36.9
Q ss_pred cCCceeecCCCc-h---hhccCCCccceeeccC----cchhhhhhhcCCceecccccc
Q 012744 326 AARGQMISWSPQ-Q---KVLTHPSISCFMSHCG----WNSTTEGVSNGVPFLCWPFFA 375 (457)
Q Consensus 326 ~~nv~~~~~~pq-~---~ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~ 375 (457)
..|+.+.++++. + .++..+++ +|+... .+++.||+.+|+|+|+.+...
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~ 215 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGG 215 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCC
Confidence 467888888632 2 35555888 888776 789999999999999987654
No 121
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=0.00019 Score=55.36 Aligned_cols=108 Identities=17% Similarity=0.140 Sum_probs=69.3
Q ss_pred EEEEeCCcccCCHHHHH--HHHHHHhhcCCcEEEEEcCCCCCCCcCCCchhHHHHhcCCceeecCC--C-chhhccCCCc
Q 012744 272 IYVAFGSHTVLEQNQFQ--ELALGLEICNRSFLWVVRPDITNDANDAYPEGFRERVAARGQMISWS--P-QQKVLTHPSI 346 (457)
Q Consensus 272 v~vs~Gs~~~~~~~~~~--~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~--p-q~~ll~~~~~ 346 (457)
+|||-||....=...+. ++.+-.+....++|+.+++. ...|- .+ .++.+|. + -+.+...+++
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~------d~kpv------ag-l~v~~F~~~~kiQsli~darI 68 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNG------DIKPV------AG-LRVYGFDKEEKIQSLIHDARI 68 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCC------Ccccc------cc-cEEEeechHHHHHHHhhcceE
Confidence 68999987221111111 12222233345788888864 22331 11 2454444 3 3567777777
Q ss_pred cceeeccCcchhhhhhhcCCceecccccc--------chhhhHHhhhhhhceeEEee
Q 012744 347 SCFMSHCGWNSTTEGVSNGVPFLCWPFFA--------DQFMNTTYICDVWKVGLRLE 395 (457)
Q Consensus 347 ~~~I~HgG~~s~~eal~~GvP~l~~P~~~--------DQ~~na~~v~~~lG~g~~l~ 395 (457)
+|+|+|.||+..++..++|.+++|-.. .|---|..+.+ ++.-....
T Consensus 69 --VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae-~~~vv~~s 122 (161)
T COG5017 69 --VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAE-INYVVACS 122 (161)
T ss_pred --EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHh-cCceEEEc
Confidence 999999999999999999999999643 57778888887 57665554
No 122
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.61 E-value=0.045 Score=53.23 Aligned_cols=102 Identities=12% Similarity=-0.009 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhhcCCcE-EEEEcCCCCCCCcCCCchhHHHHhcCCceeecCCCc----hhhccCCCccceeeccC----
Q 012744 284 QNQFQELALGLEICNRSF-LWVVRPDITNDANDAYPEGFRERVAARGQMISWSPQ----QKVLTHPSISCFMSHCG---- 354 (457)
Q Consensus 284 ~~~~~~~~~a~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq----~~ll~~~~~~~~I~HgG---- 354 (457)
...+..+++|+...+..+ ++.+|.. . ... ..++...++... .++++.+|+ ||.-.=
T Consensus 255 ~Kg~~~li~A~~~l~~~~~L~ivG~g----~-~~~--------~~~v~~~g~~~~~~~l~~~y~~aDv--fV~pS~~Egf 319 (405)
T PRK10125 255 GKTDQQLVREMMALGDKIELHTFGKF----S-PFT--------AGNVVNHGFETDKRKLMSALNQMDA--LVFSSRVDNY 319 (405)
T ss_pred CccHHHHHHHHHhCCCCeEEEEEcCC----C-ccc--------ccceEEecCcCCHHHHHHHHHhCCE--EEECCccccC
Confidence 344567888887665443 3334422 0 001 234555566532 346777888 886442
Q ss_pred cchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHH
Q 012744 355 WNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKV 411 (457)
Q Consensus 355 ~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i 411 (457)
-.++.||+++|+|+|+....+ ....+.+ +.|..++. -+.++|++++
T Consensus 320 p~vilEAmA~G~PVVat~~gG----~~Eiv~~--~~G~lv~~-----~d~~~La~~~ 365 (405)
T PRK10125 320 PLILCEALSIGVPVIATHSDA----AREVLQK--SGGKTVSE-----EEVLQLAQLS 365 (405)
T ss_pred cCHHHHHHHcCCCEEEeCCCC----hHHhEeC--CcEEEECC-----CCHHHHHhcc
Confidence 468999999999999987764 2233333 56887753 3677888754
No 123
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.55 E-value=0.0056 Score=57.54 Aligned_cols=135 Identities=11% Similarity=0.033 Sum_probs=77.4
Q ss_pred CCeEEEEEeCCc---ccCCHHHHHHHHHHHhhcCCcEEEEEcCCCCCCCcCCCchhHHHHhcCCceeecC--CCch-hhc
Q 012744 268 ANSVIYVAFGSH---TVLEQNQFQELALGLEICNRSFLWVVRPDITNDANDAYPEGFRERVAARGQMISW--SPQQ-KVL 341 (457)
Q Consensus 268 ~~~~v~vs~Gs~---~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~--~pq~-~ll 341 (457)
+++.|.+..|+. ..++.+.+.++++.+.+.++++++..++. .+...-+.+.+..+ +..+.+- +++. .++
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~----~e~~~~~~i~~~~~-~~~l~g~~sL~el~ali 252 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGND----AEKQRAERIAEALP-GAVVLPKMSLAEVAALL 252 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCH----HHHHHHHHHHhhCC-CCeecCCCCHHHHHHHH
Confidence 355677777754 23677889999999876677877665533 11111122222222 2233333 3343 699
Q ss_pred cCCCccceeeccCcchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEE-eeccCCCccCHHHHHHHHHHHh
Q 012744 342 THPSISCFMSHCGWNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLR-LERNQSGIIGREEIKNKVDQVL 415 (457)
Q Consensus 342 ~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~-l~~~~~~~~~~~~l~~~i~~~l 415 (457)
++|++ +|+.- .|.+.=|.+.|+|+|++=-..+ ..+-.- +|-... +....-..++++++.++++++|
T Consensus 253 ~~a~l--~I~~D-Sgp~HlAaa~g~P~i~lfg~t~----p~~~~P-~~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 253 AGADA--VVGVD-TGLTHLAAALDKPTVTLYGATD----PGRTGG-YGKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred HcCCE--EEeCC-ChHHHHHHHcCCCEEEEECCCC----Hhhccc-CCCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 99999 99874 5677778899999987621111 111111 121111 1111136789999999998875
No 124
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.37 E-value=0.052 Score=48.87 Aligned_cols=104 Identities=20% Similarity=0.122 Sum_probs=69.7
Q ss_pred CCCcChHHHHHHHHHHHhCCCeEEEEeCCc--chhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHH-HHHHHHHHh
Q 012744 12 PEQGHVIPLLELSQNLAKHGLRITFVNSEY--NHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMR-KLLEKRLQV 88 (457)
Q Consensus 12 ~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 88 (457)
+-.-|+.-+..|.+.|.++||+|.+.+-.. ..+.+..+ |+.+..+...-. ..+. .+++....
T Consensus 8 ~n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~y---------gf~~~~Igk~g~-----~tl~~Kl~~~~eR- 72 (346)
T COG1817 8 GNPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLY---------GFPYKSIGKHGG-----VTLKEKLLESAER- 72 (346)
T ss_pred CCcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHh---------CCCeEeecccCC-----ccHHHHHHHHHHH-
Confidence 334577788999999999999999877433 24445555 787777753211 1122 22222211
Q ss_pred cchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEEEechh
Q 012744 89 MPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAVVVITS 138 (457)
Q Consensus 89 ~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~ 138 (457)
.-.+.+++.. .+||+.+. -.++.++.+|.-+|+|++.+....
T Consensus 73 -~~~L~ki~~~------~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~e 114 (346)
T COG1817 73 -VYKLSKIIAE------FKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNE 114 (346)
T ss_pred -HHHHHHHHhh------cCCceEee-cCCcchhhHHhhcCCceEEecCCh
Confidence 1234455555 99999999 577899999999999999986554
No 125
>PRK14099 glycogen synthase; Provisional
Probab=97.25 E-value=0.25 Score=49.23 Aligned_cols=41 Identities=20% Similarity=0.283 Sum_probs=33.6
Q ss_pred CCCCEEEEEcCC------CCcChHHHHHHHHHHHhCCCeEEEEeCCc
Q 012744 1 MSSPHVVVIPNP------EQGHVIPLLELSQNLAKHGLRITFVNSEY 41 (457)
Q Consensus 1 m~~~~vl~~~~~------~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~ 41 (457)
|++|||+|++.- +.|=-.-+-+|.++|+++||+|.++.+.+
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 899999998843 33555567889999999999999999855
No 126
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.17 E-value=0.0013 Score=53.01 Aligned_cols=80 Identities=15% Similarity=0.214 Sum_probs=49.6
Q ss_pred cCCceeecCCCc-hhhccCCCccceeec--cC-cchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCCCc
Q 012744 326 AARGQMISWSPQ-QKVLTHPSISCFMSH--CG-WNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGI 401 (457)
Q Consensus 326 ~~nv~~~~~~pq-~~ll~~~~~~~~I~H--gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~ 401 (457)
..|+...+|++. .+++..+++....+. .| .+++.|++++|+|+|+.+.. ....++. .+.|..+.
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~~~-~~~~~~~~------ 119 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIVEE-DGCGVLVA------ 119 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE-T------
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhheee-cCCeEEEC------
Confidence 568999999864 368999999444432 23 48999999999999998762 1222233 37777662
Q ss_pred cCHHHHHHHHHHHhCC
Q 012744 402 IGREEIKNKVDQVLGD 417 (457)
Q Consensus 402 ~~~~~l~~~i~~~l~~ 417 (457)
-+.+++.++|.++++|
T Consensus 120 ~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 120 NDPEELAEAIERLLND 135 (135)
T ss_dssp T-HHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHhcC
Confidence 3899999999999865
No 127
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.17 E-value=0.0015 Score=61.85 Aligned_cols=109 Identities=14% Similarity=0.313 Sum_probs=78.7
Q ss_pred cCCceeecCCCchhh---ccCCCccceeecc-------Cc------chhhhhhhcCCceeccccccchhhhHHhhhhhhc
Q 012744 326 AARGQMISWSPQQKV---LTHPSISCFMSHC-------GW------NSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWK 389 (457)
Q Consensus 326 ~~nv~~~~~~pq~~l---l~~~~~~~~I~Hg-------G~------~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG 389 (457)
.+||...+|+|++++ |.. +.+.+...- .+ +-+.+.+++|+|+|+.+ +...+..|++. +
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~----~~~~~~~V~~~-~ 279 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWS----KAAIADFIVEN-G 279 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECC----CccHHHHHHhC-C
Confidence 578989999998764 443 332222211 11 12667899999999864 45577888885 9
Q ss_pred eeEEeeccCCCccCHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHH
Q 012744 390 VGLRLERNQSGIIGREEIKNKVDQVLGDQ--NFKARALKLKEKALSSVREGGSSNKAIQNFVQS 451 (457)
Q Consensus 390 ~g~~l~~~~~~~~~~~~l~~~i~~~l~~~--~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 451 (457)
+|+.++ +.+++.+++..+..+. .+++|++++++++++ |.-.++++++++..
T Consensus 280 ~G~~v~-------~~~el~~~l~~~~~~~~~~m~~n~~~~~~~~~~----g~~~~~~~~~~~~~ 332 (333)
T PRK09814 280 LGFVVD-------SLEELPEIIDNITEEEYQEMVENVKKISKLLRN----GYFTKKALVDAIKE 332 (333)
T ss_pred ceEEeC-------CHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHhc
Confidence 999983 5678999998865332 578999999999997 77777887777653
No 128
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=97.05 E-value=0.35 Score=47.12 Aligned_cols=179 Identities=12% Similarity=0.174 Sum_probs=102.9
Q ss_pred hHHhccCCCCeEEEEEeCCcccC------C-H---HHHHHHHHHHhhcCCcEEEEEcCC-CCC-CCc-CCCchhHHHHhc
Q 012744 260 LEWLDQRQANSVIYVAFGSHTVL------E-Q---NQFQELALGLEICNRSFLWVVRPD-ITN-DAN-DAYPEGFRERVA 326 (457)
Q Consensus 260 ~~~l~~~~~~~~v~vs~Gs~~~~------~-~---~~~~~~~~a~~~~~~~~i~~~~~~-~~~-~~~-~~~~~~~~~~~~ 326 (457)
..|+....++++|-|+......+ . . +.+..+++.+.+.|++++++.... ... +.. ...-..+.+.++
T Consensus 225 ~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~ 304 (426)
T PRK10017 225 QHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHVS 304 (426)
T ss_pred hhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhcc
Confidence 34555444456888876543211 1 1 234455666656688877665321 000 000 000112223333
Q ss_pred --CCceee--cCCCch--hhccCCCccceeeccCcchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEE-eeccCC
Q 012744 327 --ARGQMI--SWSPQQ--KVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLR-LERNQS 399 (457)
Q Consensus 327 --~nv~~~--~~~pq~--~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~-l~~~~~ 399 (457)
.++.++ .+-+.+ .++++|++ +|..==+ +..-|+.+|||.+.+++ |....+ .+.. +|.... .+.
T Consensus 305 ~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~RlH-a~I~a~~~gvP~i~i~Y--~~K~~~-~~~~-lg~~~~~~~~--- 374 (426)
T PRK10017 305 DPARYHVVMDELNDLEMGKILGACEL--TVGTRLH-SAIISMNFGTPAIAINY--EHKSAG-IMQQ-LGLPEMAIDI--- 374 (426)
T ss_pred cccceeEecCCCChHHHHHHHhhCCE--EEEecch-HHHHHHHcCCCEEEeee--hHHHHH-HHHH-cCCccEEech---
Confidence 333433 333443 78899988 8864322 56678899999999988 444333 3355 687755 333
Q ss_pred CccCHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhc
Q 012744 400 GIIGREEIKNKVDQVLGDQ-NFKARALKLKEKALSSVREGGSSNKAIQNFVQSIKQ 454 (457)
Q Consensus 400 ~~~~~~~l~~~i~~~l~~~-~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 454 (457)
..++.++|.+++.++++|. .++++.++.-+++++ ...+.+.+++.++-+
T Consensus 375 ~~l~~~~Li~~v~~~~~~r~~~~~~l~~~v~~~r~------~~~~~~~~~~~~~~~ 424 (426)
T PRK10017 375 RHLLDGSLQAMVADTLGQLPALNARLAEAVSRERQ------TGMQMVQSVLERIGE 424 (426)
T ss_pred hhCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcc
Confidence 5688999999999999985 567766666666654 344566666666543
No 129
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.87 E-value=0.089 Score=48.31 Aligned_cols=102 Identities=15% Similarity=0.081 Sum_probs=67.3
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCC--CeEEEEeCCcchhHHHhhhcCCCCCCCCeEEE-ecCCCCCCCCCcchHHHH
Q 012744 5 HVVVIPNPEQGHVIPLLELSQNLAKHG--LRITFVNSEYNHKRVLESLEGKNYIGEQIHLV-SIPDGMEPWDDRSDMRKL 81 (457)
Q Consensus 5 ~vl~~~~~~~GH~~p~~~la~~L~~~G--h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 81 (457)
||+++-..+.|++.-+.++.++|+++. -+|++++.+.+.+.+... +.++-+ .++... .
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~--------p~id~v~~~~~~~--------~--- 61 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELM--------PEVDRVIVLPKKH--------G--- 61 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcC--------CccCEEEEcCCcc--------c---
Confidence 588899999999999999999999975 899999999888877755 344332 222110 0
Q ss_pred HHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEE
Q 012744 82 LEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAV 133 (457)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~ 133 (457)
........+++..+++ .++|+++.=........++...+++...
T Consensus 62 -----~~~~~~~~~~~~~l~~---~~~D~vi~~~~~~~~~~~~~~~~~~~~~ 105 (279)
T cd03789 62 -----KLGLGARRRLARALRR---RRYDLAIDLQGSLRSALLPFLAGAPRRI 105 (279)
T ss_pred -----ccchHHHHHHHHHHhh---cCCCEEEECCCccHHHHHHHHhCCCeEE
Confidence 0001223455555555 7899988765555444455555655543
No 130
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=96.83 E-value=0.075 Score=50.52 Aligned_cols=105 Identities=12% Similarity=0.146 Sum_probs=71.0
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhC--CCeEEEEeCCcchhHHHhhhcCCCCCCCCeE-EEecCCCCCCCCCcchHHHH
Q 012744 5 HVVVIPNPEQGHVIPLLELSQNLAKH--GLRITFVNSEYNHKRVLESLEGKNYIGEQIH-LVSIPDGMEPWDDRSDMRKL 81 (457)
Q Consensus 5 ~vl~~~~~~~GH~~p~~~la~~L~~~--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 81 (457)
||+++-..+.|++.-+.++.++|+++ +.+|++++.+.+.+.+... +.++ ++.++.... .....
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------p~vd~vi~~~~~~~----~~~~~-- 66 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN--------PDINALYGLDRKKA----KAGER-- 66 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC--------CCccEEEEeChhhh----cchHH--
Confidence 58899999999999999999999885 7999999999988877765 3554 233331110 00000
Q ss_pred HHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEE
Q 012744 82 LEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAV 133 (457)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~ 133 (457)
.+ ....+++..+++ .++|++|.-........++...|.|.-.
T Consensus 67 --~~-----~~~~~l~~~lr~---~~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 67 --KL-----ANQFHLIKVLRA---NRYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred --HH-----HHHHHHHHHHHh---CCCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 11 012234455555 7999988654455667788888988655
No 131
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=96.77 E-value=0.3 Score=46.47 Aligned_cols=103 Identities=11% Similarity=0.023 Sum_probs=71.4
Q ss_pred CEEEEEcCCCCcChHHHHHHHHHHHhC--CCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEe-cCCCCCCCCCcchHHH
Q 012744 4 PHVVVIPNPEQGHVIPLLELSQNLAKH--GLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVS-IPDGMEPWDDRSDMRK 80 (457)
Q Consensus 4 ~~vl~~~~~~~GH~~p~~~la~~L~~~--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (457)
|||+++-..+.|++.-..++.+.|+++ +.+|++++.+.+.+.++.. +.++-+. ++.. .. ...
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------P~vd~vi~~~~~--~~-----~~~ 65 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM--------PEVNEAIPMPLG--HG-----ALE 65 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC--------CccCEEEecccc--cc-----hhh
Confidence 579999999999999999999999985 8999999998888888765 3554332 2211 00 000
Q ss_pred HHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEE
Q 012744 81 LLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAV 133 (457)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~ 133 (457)
+ ....+++..+++ .++|++|.=........++...|+|.-.
T Consensus 66 ----~-----~~~~~l~~~lr~---~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 66 ----I-----GERRRLGHSLRE---KRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred ----h-----HHHHHHHHHHHh---cCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 0 112344555665 7999988665555666677777887655
No 132
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.74 E-value=0.028 Score=45.38 Aligned_cols=102 Identities=16% Similarity=0.287 Sum_probs=64.4
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHHHH
Q 012744 5 HVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLLEK 84 (457)
Q Consensus 5 ~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (457)
||++++.....| ...+++.|.++||+|++++.....+..... .++.+..++.... .....+
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~--------~~i~~~~~~~~~k------~~~~~~-- 61 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEII--------EGIKVIRLPSPRK------SPLNYI-- 61 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHh--------CCeEEEEecCCCC------ccHHHH--
Confidence 467777666666 457799999999999999996654333322 3888888753311 111111
Q ss_pred HHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcc---hHHHHHHHcC-CceEEEe
Q 012744 85 RLQVMPGKLEGLIEEIHGREGEKTACLIADGAAG---WAIEVAEKMK-LRRAVVV 135 (457)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~---~~~~~A~~lg-iP~v~~~ 135 (457)
.. -.+..+++. .+||+|.+-.... .+..++...+ +|++...
T Consensus 62 --~~--~~l~k~ik~------~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~ 106 (139)
T PF13477_consen 62 --KY--FRLRKIIKK------EKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTV 106 (139)
T ss_pred --HH--HHHHHHhcc------CCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEe
Confidence 11 134455555 8999997766543 3444667788 8988643
No 133
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.73 E-value=0.12 Score=49.34 Aligned_cols=106 Identities=12% Similarity=0.122 Sum_probs=71.1
Q ss_pred CCEEEEEcCCCCcChHHHHHHHHHHHhC--CCeEEEEeCCcchhHHHhhhcCCCCCCCCeEE-EecCCCCCCCCCcchHH
Q 012744 3 SPHVVVIPNPEQGHVIPLLELSQNLAKH--GLRITFVNSEYNHKRVLESLEGKNYIGEQIHL-VSIPDGMEPWDDRSDMR 79 (457)
Q Consensus 3 ~~~vl~~~~~~~GH~~p~~~la~~L~~~--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 79 (457)
.+||+++-....|++.-..++.++|+++ +.+|++++.+.+.+.+... +.++- +.++.. .. ...
T Consensus 5 ~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------P~id~vi~~~~~-----~~-~~~ 70 (352)
T PRK10422 5 FRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSEN--------PEINALYGIKNK-----KA-GAS 70 (352)
T ss_pred CceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccC--------CCceEEEEeccc-----cc-cHH
Confidence 4689999999999999999999999986 7999999999988877655 35542 223211 00 000
Q ss_pred HHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEE
Q 012744 80 KLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAV 133 (457)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~ 133 (457)
. .+ ....+++..+++ .+||++|.-........++...|.|...
T Consensus 71 ~---~~-----~~~~~l~~~lr~---~~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 71 E---KI-----KNFFSLIKVLRA---NKYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred H---HH-----HHHHHHHHHHhh---CCCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 0 00 123344556665 7999988654444555667777877655
No 134
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.68 E-value=0.003 Score=47.11 Aligned_cols=53 Identities=11% Similarity=0.187 Sum_probs=43.6
Q ss_pred cchhhHHhccCCCCeEEEEEeCCcccC---CH--HHHHHHHHHHhhcCCcEEEEEcCC
Q 012744 256 DSKCLEWLDQRQANSVIYVAFGSHTVL---EQ--NQFQELALGLEICNRSFLWVVRPD 308 (457)
Q Consensus 256 ~~~l~~~l~~~~~~~~v~vs~Gs~~~~---~~--~~~~~~~~a~~~~~~~~i~~~~~~ 308 (457)
...+..|+....++|.|++|+||.... .. ..+..++++++.++..+|..+...
T Consensus 27 ~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~ 84 (97)
T PF06722_consen 27 PAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAA 84 (97)
T ss_dssp SEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTC
T ss_pred CCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHH
Confidence 344557999999999999999998543 22 478999999999999999999865
No 135
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.51 E-value=0.17 Score=47.77 Aligned_cols=104 Identities=16% Similarity=0.097 Sum_probs=74.4
Q ss_pred CEEEEEcCCCCcChHHHHHHHHHHHhCC--CeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHH
Q 012744 4 PHVVVIPNPEQGHVIPLLELSQNLAKHG--LRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKL 81 (457)
Q Consensus 4 ~~vl~~~~~~~GH~~p~~~la~~L~~~G--h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (457)
+||+++-....|++.=..++.+.|+++. .++++++.+.+.+.+... +.++-+..-.. . .. .
T Consensus 2 ~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~--------p~I~~vi~~~~--~--~~-~---- 64 (334)
T COG0859 2 MKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLN--------PEIDKVIIIDK--K--KK-G---- 64 (334)
T ss_pred ceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcC--------hHhhhhccccc--c--cc-c----
Confidence 6899999999999999999999999985 999999999998888765 34443222111 0 00 0
Q ss_pred HHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEE
Q 012744 82 LEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAV 133 (457)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~ 133 (457)
.-......+.+.+++ .++|+||.=....-...++...++|.-.
T Consensus 65 ------~~~~~~~~l~~~lr~---~~yD~vidl~~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 65 ------LGLKERLALLRTLRK---ERYDAVIDLQGLLKSALLALLLGIPFRI 107 (334)
T ss_pred ------cchHHHHHHHHHhhc---cCCCEEEECcccHHHHHHHHHhCCCccc
Confidence 111344455666665 7899988776666677777788888766
No 136
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.35 E-value=0.25 Score=46.67 Aligned_cols=102 Identities=13% Similarity=0.048 Sum_probs=69.1
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhC--CCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEE-ecCCCCCCCCCcchHHHH
Q 012744 5 HVVVIPNPEQGHVIPLLELSQNLAKH--GLRITFVNSEYNHKRVLESLEGKNYIGEQIHLV-SIPDGMEPWDDRSDMRKL 81 (457)
Q Consensus 5 ~vl~~~~~~~GH~~p~~~la~~L~~~--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 81 (457)
||+++-..+-|++.-..++.++|++. +.+|++++.+.+.+.+... +.++-+ .++.. .. ...
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------p~id~v~~~~~~--~~-----~~~- 64 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERM--------PEIRQAIDMPLG--HG-----ALE- 64 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcC--------chhceeeecCCc--cc-----chh-
Confidence 58999999999999999999999886 8999999998887777655 344322 22211 00 000
Q ss_pred HHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEE
Q 012744 82 LEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAV 133 (457)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~ 133 (457)
+ ....+++..+++ .++|++|.-........++...|+|.-.
T Consensus 65 ---~-----~~~~~~~~~lr~---~~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 65 ---L-----TERRRLGRSLRE---ERYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred ---h-----hHHHHHHHHHhh---cCCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 0 112344555555 7999988876555566667777887543
No 137
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.039 Score=53.79 Aligned_cols=132 Identities=14% Similarity=0.197 Sum_probs=84.2
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHhhcCCcEEEEEcCCCCCCCcCCCchhHHHH------hcCCceeecCCCc---h
Q 012744 268 ANSVIYVAFGSHTVLEQNQFQELALGLEICNRSFLWVVRPDITNDANDAYPEGFRER------VAARGQMISWSPQ---Q 338 (457)
Q Consensus 268 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~nv~~~~~~pq---~ 338 (457)
++.+||+||+...+..++.+..=++.++..+..++|..++. ..+.....+.+. ...+.++.+-.|. .
T Consensus 428 ~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~----~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~ 503 (620)
T COG3914 428 EDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGG----DDAEINARLRDLAEREGVDSERLRFLPPAPNEDHR 503 (620)
T ss_pred CCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCC----CcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHH
Confidence 45599999999999999999998888888999999998764 112222222221 1245555555553 3
Q ss_pred hhccCCCcccee---eccCcchhhhhhhcCCceeccccccchhh--hHHhhhhhhceeEEeeccCCCccCHHHHHHHHH
Q 012744 339 KVLTHPSISCFM---SHCGWNSTTEGVSNGVPFLCWPFFADQFM--NTTYICDVWKVGLRLERNQSGIIGREEIKNKVD 412 (457)
Q Consensus 339 ~ll~~~~~~~~I---~HgG~~s~~eal~~GvP~l~~P~~~DQ~~--na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~ 412 (457)
+=+..+|+ |+ --||+.|..|+|+.|||+|.++ ++|+- |+.-+....|+-..+-. -.++-++.+++
T Consensus 504 a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~vA~-----s~~dYV~~av~ 573 (620)
T COG3914 504 ARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELVAD-----SRADYVEKAVA 573 (620)
T ss_pred Hhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhhcC-----CHHHHHHHHHH
Confidence 45555666 66 4699999999999999999876 44432 22233222354444431 23455555553
No 138
>PHA01633 putative glycosyl transferase group 1
Probab=96.30 E-value=0.065 Score=50.19 Aligned_cols=85 Identities=11% Similarity=0.067 Sum_probs=56.6
Q ss_pred hcCCceee---cCCCch---hhccCCCccceeecc---C-cchhhhhhhcCCceecccc------ccch------hhhHH
Q 012744 325 VAARGQMI---SWSPQQ---KVLTHPSISCFMSHC---G-WNSTTEGVSNGVPFLCWPF------FADQ------FMNTT 382 (457)
Q Consensus 325 ~~~nv~~~---~~~pq~---~ll~~~~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~------~~DQ------~~na~ 382 (457)
.++++.+. +++++. +++..+++ +|.-. | -.++.||+++|+|+|+.-. ..|+ .++..
T Consensus 199 l~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~ 276 (335)
T PHA01633 199 VPANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVE 276 (335)
T ss_pred CCCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHH
Confidence 35678776 455654 67888998 88643 4 3578999999999998633 2232 23332
Q ss_pred hhh--hhhceeEEeeccCCCccCHHHHHHHHHHHhCC
Q 012744 383 YIC--DVWKVGLRLERNQSGIIGREEIKNKVDQVLGD 417 (457)
Q Consensus 383 ~v~--~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~ 417 (457)
... +. |.|..+ ...++++++++|.+++..
T Consensus 277 ~~~~~~~-g~g~~~-----~~~d~~~la~ai~~~~~~ 307 (335)
T PHA01633 277 EYYDKEH-GQKWKI-----HKFQIEDMANAIILAFEL 307 (335)
T ss_pred HhcCccc-Cceeee-----cCCCHHHHHHHHHHHHhc
Confidence 222 22 566666 347999999999999543
No 139
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.93 Score=41.71 Aligned_cols=362 Identities=11% Similarity=0.064 Sum_probs=178.2
Q ss_pred CCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcc--hhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHH
Q 012744 3 SPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYN--HKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRK 80 (457)
Q Consensus 3 ~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (457)
|.|++++..|-.||-=++.-=|..|++.|.+|.+++.... .+.+.+. ++++++.++.--.......-..-
T Consensus 12 k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~h--------prI~ih~m~~l~~~~~~p~~~~l 83 (444)
T KOG2941|consen 12 KKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLNH--------PRIRIHGMPNLPFLQGGPRVLFL 83 (444)
T ss_pred cceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhcC--------CceEEEeCCCCcccCCCchhhhh
Confidence 6799999999999999999999999999999999986544 3444444 68999998732211111111111
Q ss_pred HHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCC-cchHHHHH----HHcCCceEEEechhhHHHHHHhhhhhhhhcc
Q 012744 81 LLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGA-AGWAIEVA----EKMKLRRAVVVITSAATVALTFSIPKLIEDG 155 (457)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~-~~~~~~~A----~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~ 155 (457)
.++.+. .+...+..++.. .++|+|+.-.- +.....++ ...|..+++=+....+..........
T Consensus 84 ~lKvf~-Qfl~Ll~aL~~~------~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ysl~l~~~~g~----- 151 (444)
T KOG2941|consen 84 PLKVFW-QFLSLLWALFVL------RPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYSLQLKLKLGF----- 151 (444)
T ss_pred HHHHHH-HHHHHHHHHHhc------cCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHHHHHHhhcCC-----
Confidence 122221 111233344443 78898776642 22333333 44477777766555543222111000
Q ss_pred CCCCCCCCccccccccCCCCCCCccccccc-cccCCcchhhHHHHHHHHHHHhhhcCcEEEEcCcccccchhhccCC---
Q 012744 156 VINSNGTPIKEQMIQLAPNMPAISTGELFW-TGIGDLTMQKFFFDFMVKNMRATRAADFQLCNSTYELEGGAFSMIP--- 231 (457)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~--- 231 (457)
..+...+.......+..+.. +...+. .+++.+ ..++--....++..-.++-+ .++-.
T Consensus 152 ----------~h~lV~l~~~~E~~fgk~a~~nLcVT~----AMr~dL--~qnWgi~ra~v~YDrPps~~---~~l~~~H~ 212 (444)
T KOG2941|consen 152 ----------QHPLVRLVRWLEKYFGKLADYNLCVTK----AMREDL--IQNWGINRAKVLYDRPPSKP---TPLDEQHE 212 (444)
T ss_pred ----------CCchHHHHHHHHHHhhcccccchhhHH----HHHHHH--HHhcCCceeEEEecCCCCCC---CchhHHHH
Confidence 00000000000000000000 000000 011000 00011112233444333311 11100
Q ss_pred ceeeeCcccCCCCCCCCCCCCCCCcchhhHHhc--------cCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhc------
Q 012744 232 ELLPIGPLLASNRLGNSAGYFLPEDSKCLEWLD--------QRQANSVIYVAFGSHTVLEQNQFQELALGLEIC------ 297 (457)
Q Consensus 232 ~~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~--------~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~------ 297 (457)
-+..+|..+++...+.+. ....+-..|.. ...++|.++||.- +..+++.+-.+++|+..-
T Consensus 213 lf~~l~~d~~~f~ar~~q----~~~~~~taf~~k~~s~~v~~~~~~pallvsST--swTpDEdf~ILL~AL~~y~~~~~~ 286 (444)
T KOG2941|consen 213 LFMKLAGDHSPFRAREPQ----DKALERTAFTKKDASGDVQLLPERPALLVSST--SWTPDEDFGILLEALVIYEEQLYD 286 (444)
T ss_pred HHhhhccccchhhhcccc----cchhhhhhHhhhcccchhhhccCCCeEEEecC--CCCCcccHHHHHHHHHhhhhhhhh
Confidence 123344433322111000 00011001111 1234667888753 334667788888887622
Q ss_pred ---CC-cEEEEEcCCCCCCCcCCCchhHHHHh----cCCceee-cCCC---chhhccCCCccceeeccCcc-----hhhh
Q 012744 298 ---NR-SFLWVVRPDITNDANDAYPEGFRERV----AARGQMI-SWSP---QQKVLTHPSISCFMSHCGWN-----STTE 360 (457)
Q Consensus 298 ---~~-~~i~~~~~~~~~~~~~~~~~~~~~~~----~~nv~~~-~~~p---q~~ll~~~~~~~~I~HgG~~-----s~~e 360 (457)
+. +++.++.+. .++.+.+.+.+ -.+|.+. .|+. +..+|..+|+|.++|-...| -|..
T Consensus 287 ~~~~lP~llciITGK------GPlkE~Y~~~I~~~~~~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVD 360 (444)
T KOG2941|consen 287 KTHNLPSLLCIITGK------GPLKEKYSQEIHEKNLQHVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVD 360 (444)
T ss_pred ccCCCCcEEEEEcCC------CchhHHHHHHHHHhcccceeeeecccccccchhHhhccccceEeeecCcccCcchhHHH
Confidence 12 344444433 33444444332 2566544 7874 55699999998888887766 4677
Q ss_pred hhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhC----CH----HHHHHHHHH
Q 012744 361 GVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLG----DQ----NFKARALKL 427 (457)
Q Consensus 361 al~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~----~~----~~~~~a~~l 427 (457)
-.-+|+|+..+-+- .--..|.+. --|.... ++++|++.+.-++. |. .+++|+++-
T Consensus 361 MFGcglPvcA~~fk----cl~ELVkh~-eNGlvF~-------Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~ 423 (444)
T KOG2941|consen 361 MFGCGLPVCAVNFK----CLDELVKHG-ENGLVFE-------DSEELAEQLQMLFKNFPDNADELNQLKKNLREE 423 (444)
T ss_pred hhcCCCceeeecch----hHHHHHhcC-CCceEec-------cHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH
Confidence 78889998876443 122344443 5666663 78999999999987 33 355555554
No 140
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.20 E-value=0.064 Score=52.72 Aligned_cols=139 Identities=16% Similarity=0.230 Sum_probs=87.0
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHhhcCCcEEEEEcCCCCCCCcCCCchhHHHH------hcCCceeecCCCchhhc
Q 012744 268 ANSVIYVAFGSHTVLEQNQFQELALGLEICNRSFLWVVRPDITNDANDAYPEGFRER------VAARGQMISWSPQQKVL 341 (457)
Q Consensus 268 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~nv~~~~~~pq~~ll 341 (457)
+..+||.+|.-....+++.++.-++.+.+.+..++|.....-..+ ..|... .++++.+..-++..+-.
T Consensus 757 ~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge------~rf~ty~~~~Gl~p~riifs~va~k~eHv 830 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGE------QRFRTYAEQLGLEPDRIIFSPVAAKEEHV 830 (966)
T ss_pred CCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccch------HHHHHHHHHhCCCccceeeccccchHHHH
Confidence 345999999888889999999999999999999999987541111 222221 13444444433333222
Q ss_pred cCC---C--ccceeeccCcchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhC
Q 012744 342 THP---S--ISCFMSHCGWNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLG 416 (457)
Q Consensus 342 ~~~---~--~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~ 416 (457)
++. | ++-..+. |+.|.++.||+|+|||.+|...--...|.-..-.+|+|-.+.+ +.++-.+.--++-.
T Consensus 831 rr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak------~~eEY~~iaV~Lat 903 (966)
T KOG4626|consen 831 RRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAK------NREEYVQIAVRLAT 903 (966)
T ss_pred HhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhh------hHHHHHHHHHHhhc
Confidence 221 1 1224444 7889999999999999999876544444433333799886643 44444444444444
Q ss_pred CHH
Q 012744 417 DQN 419 (457)
Q Consensus 417 ~~~ 419 (457)
|..
T Consensus 904 d~~ 906 (966)
T KOG4626|consen 904 DKE 906 (966)
T ss_pred CHH
Confidence 544
No 141
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=96.09 E-value=0.43 Score=44.88 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=41.1
Q ss_pred CEEEEEcCCCCcChHHHHHHHHHHHhC--CCeEEEEeCCcchhHHHhh
Q 012744 4 PHVVVIPNPEQGHVIPLLELSQNLAKH--GLRITFVNSEYNHKRVLES 49 (457)
Q Consensus 4 ~~vl~~~~~~~GH~~p~~~la~~L~~~--Gh~Vt~~~~~~~~~~~~~~ 49 (457)
|||+++-..+.|++.-..++.+.|+++ +.+|++++.+.+.+.+...
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~~~ 48 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSWH 48 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHhcC
Confidence 589999999999999999999999986 8999999998887766544
No 142
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=95.98 E-value=0.21 Score=46.40 Aligned_cols=161 Identities=11% Similarity=0.075 Sum_probs=85.1
Q ss_pred CcEEEEcCcccccchhhccCCce-eeeCcccCCCCCCCCCCCCCCCcchhhHHhcc--CCCCeEEEEEeCCc---ccCCH
Q 012744 211 ADFQLCNSTYELEGGAFSMIPEL-LPIGPLLASNRLGNSAGYFLPEDSKCLEWLDQ--RQANSVIYVAFGSH---TVLEQ 284 (457)
Q Consensus 211 ~~~~l~~s~~~le~~~~~~~~~~-~~vGpl~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~v~vs~Gs~---~~~~~ 284 (457)
-|+++++.+..+. -.+|+ ...|+++.-.+.. ..+.-.+|... ..+++.+-|-.|.- ..++.
T Consensus 98 FDlvi~p~HD~~~-----~~~Nvl~t~ga~~~i~~~~--------l~~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~ 164 (311)
T PF06258_consen 98 FDLVIVPEHDRLP-----RGPNVLPTLGAPNRITPER--------LAEAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDE 164 (311)
T ss_pred cCEEEECcccCcC-----CCCceEecccCCCcCCHHH--------HHHHHHhhhhhhccCCCCeEEEEECcCCCCcccCH
Confidence 3677777765431 22454 5678887654322 11111223222 12344555555533 23455
Q ss_pred HHHHH----HHHHHhhcCCcEEEEEcCCCCCCCcCCCchhHHH----Hhc--CCceeec---CCCchhhccCCCccceee
Q 012744 285 NQFQE----LALGLEICNRSFLWVVRPDITNDANDAYPEGFRE----RVA--ARGQMIS---WSPQQKVLTHPSISCFMS 351 (457)
Q Consensus 285 ~~~~~----~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----~~~--~nv~~~~---~~pq~~ll~~~~~~~~I~ 351 (457)
+.... +...++..+..+.+++... -|+.+.+ ... ..+.+.+ .=|+...|..++. .+||
T Consensus 165 ~~~~~l~~~l~~~~~~~~~~~~vttSRR--------Tp~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~~La~ad~-i~VT 235 (311)
T PF06258_consen 165 EDAERLLDQLAALAAAYGGSLLVTTSRR--------TPPEAEAALRELLKDNPGVYIWDGTGENPYLGFLAAADA-IVVT 235 (311)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEcCCC--------CcHHHHHHHHHhhcCCCceEEecCCCCCcHHHHHHhCCE-EEEc
Confidence 53333 3333355554555555432 2333322 232 3333332 2367789988886 3555
Q ss_pred ccCcchhhhhhhcCCceeccccccchhh----hHHhhhhhhceeEEee
Q 012744 352 HCGWNSTTEGVSNGVPFLCWPFFADQFM----NTTYICDVWKVGLRLE 395 (457)
Q Consensus 352 HgG~~s~~eal~~GvP~l~~P~~~DQ~~----na~~v~~~lG~g~~l~ 395 (457)
=--.+-+.||+..|+|+.++|.-. +.. ....+.+ .|+-..+.
T Consensus 236 ~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L~~-~g~~r~~~ 281 (311)
T PF06258_consen 236 EDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSLEE-RGAVRPFT 281 (311)
T ss_pred CccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHHHH-CCCEEECC
Confidence 555688999999999999999875 322 2234455 37666664
No 143
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.92 E-value=0.016 Score=47.67 Aligned_cols=96 Identities=19% Similarity=0.257 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHHHHHHHhcchHHHHHHH
Q 012744 19 PLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLLEKRLQVMPGKLEGLIE 98 (457)
Q Consensus 19 p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (457)
-+..|+++|.++||+|++++........... ..++.+..++-.... ........+ ..+.+++
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~~~--------~~~~~~l- 67 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDEEE-------EDGVRVHRLPLPRRP--WPLRLLRFL--------RRLRRLL- 67 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-SEE-------ETTEEEEEE--S-SS--SGGGHCCHH--------HHHHHHC-
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccccc-------cCCceEEeccCCccc--hhhhhHHHH--------HHHHHHH-
Confidence 4678999999999999999976554422111 136777776522111 100000111 1233333
Q ss_pred HHhcCCCCCeeEEEecCCcc-hHHHHHH-HcCCceEEEe
Q 012744 99 EIHGREGEKTACLIADGAAG-WAIEVAE-KMKLRRAVVV 135 (457)
Q Consensus 99 ~l~~~~~~~~D~vv~D~~~~-~~~~~A~-~lgiP~v~~~ 135 (457)
.... .+||+|.+..... ....+++ ..++|++...
T Consensus 68 ~~~~---~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 103 (160)
T PF13579_consen 68 AARR---ERPDVVHAHSPTAGLVAALARRRRGIPLVVTV 103 (160)
T ss_dssp HHCT------SEEEEEHHHHHHHHHHHHHHHT--EEEE-
T ss_pred hhhc---cCCeEEEecccchhHHHHHHHHccCCcEEEEE
Confidence 1122 8999999886433 3344445 7899998854
No 144
>PRK14098 glycogen synthase; Provisional
Probab=95.78 E-value=0.22 Score=49.76 Aligned_cols=129 Identities=10% Similarity=0.013 Sum_probs=75.2
Q ss_pred EEEEEeCCccc-CCHHHHHHHHHHHhhcCCcEEEEEcCCCCCCCcCCCchhHH---HHhcCCceeecCCCch---hhccC
Q 012744 271 VIYVAFGSHTV-LEQNQFQELALGLEICNRSFLWVVRPDITNDANDAYPEGFR---ERVAARGQMISWSPQQ---KVLTH 343 (457)
Q Consensus 271 ~v~vs~Gs~~~-~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~nv~~~~~~pq~---~ll~~ 343 (457)
.++...|.... ...+.+...+..+.+.+.+++++..++ ....+.+. ++.+.++.+..+++.. .+++.
T Consensus 308 ~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvivG~G~------~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~ 381 (489)
T PRK14098 308 PLVGVIINFDDFQGAELLAESLEKLVELDIQLVICGSGD------KEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAG 381 (489)
T ss_pred CEEEEeccccccCcHHHHHHHHHHHHhcCcEEEEEeCCC------HHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHh
Confidence 56666676542 223333333333433466666655433 11112222 2345778888888764 58889
Q ss_pred CCccceeecc---Cc-chhhhhhhcCCceecccccc--chhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHh
Q 012744 344 PSISCFMSHC---GW-NSTTEGVSNGVPFLCWPFFA--DQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVL 415 (457)
Q Consensus 344 ~~~~~~I~Hg---G~-~s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l 415 (457)
+|+ ++... |. .+.+||+++|+|.|+..... |.... ...+. +.|..+. .-++++++++|.+++
T Consensus 382 aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~~~~-~~G~l~~-----~~d~~~la~ai~~~l 449 (489)
T PRK14098 382 LDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VSEDK-GSGFIFH-----DYTPEALVAKLGEAL 449 (489)
T ss_pred CCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CCCCC-CceeEeC-----CCCHHHHHHHHHHHH
Confidence 998 87643 22 37789999999888765432 21111 11122 6777774 257899999999865
No 145
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=95.73 E-value=1.2 Score=39.26 Aligned_cols=71 Identities=23% Similarity=0.309 Sum_probs=46.7
Q ss_pred HHHHHhhcCCcEEEEEcCCCCCCCcCCCchhHHHHhcC-----Ccee-----ecCCCchhhccCCCccceeeccC-cchh
Q 012744 290 LALGLEICNRSFLWVVRPDITNDANDAYPEGFRERVAA-----RGQM-----ISWSPQQKVLTHPSISCFMSHCG-WNST 358 (457)
Q Consensus 290 ~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----nv~~-----~~~~pq~~ll~~~~~~~~I~HgG-~~s~ 358 (457)
+.+.+++.+..+++++... -|+........ .+.+ .++=|+-+.|..++. +|.-.. .|-.
T Consensus 189 l~k~l~~~g~~~lisfSRR--------Tp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Ady--ii~TaDSinM~ 258 (329)
T COG3660 189 LVKILENQGGSFLISFSRR--------TPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADY--IISTADSINMC 258 (329)
T ss_pred HHHHHHhCCceEEEEeecC--------CcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcce--EEEecchhhhh
Confidence 4566688899999998654 23222211111 1112 255689999988887 666555 5888
Q ss_pred hhhhhcCCceec
Q 012744 359 TEGVSNGVPFLC 370 (457)
Q Consensus 359 ~eal~~GvP~l~ 370 (457)
+||...|+|+-+
T Consensus 259 sEAasTgkPv~~ 270 (329)
T COG3660 259 SEAASTGKPVFI 270 (329)
T ss_pred HHHhccCCCeEE
Confidence 999999999854
No 146
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=95.70 E-value=0.079 Score=44.11 Aligned_cols=96 Identities=8% Similarity=0.026 Sum_probs=58.8
Q ss_pred hCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcCCCCCe
Q 012744 29 KHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLLEKRLQVMPGKLEGLIEEIHGREGEKT 108 (457)
Q Consensus 29 ~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 108 (457)
++||+|++++........ +|++...+...-............++...... ..+.+.+..|++.+ ..|
T Consensus 1 q~gh~v~fl~~~~~~~~~-----------~GV~~~~y~~~~~~~~~~~~~~~~~e~~~~rg-~av~~a~~~L~~~G-f~P 67 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP-----------PGVRVVRYRPPRGPTPGTHPYVRDFEAAVLRG-QAVARAARQLRAQG-FVP 67 (171)
T ss_pred CCCCEEEEEecCCCCCCC-----------CCcEEEEeCCCCCCCCCCCcccccHHHHHHHH-HHHHHHHHHHHHcC-CCC
Confidence 479999999964443322 27777776431111111111111122221111 23455556666664 999
Q ss_pred eEEEecCCcchHHHHHHHc-CCceEEEech
Q 012744 109 ACLIADGAAGWAIEVAEKM-KLRRAVVVIT 137 (457)
Q Consensus 109 D~vv~D~~~~~~~~~A~~l-giP~v~~~~~ 137 (457)
|+||.-.....+..+-+.+ ++|.+.+.-.
T Consensus 68 DvI~~H~GWGe~Lflkdv~P~a~li~Y~E~ 97 (171)
T PF12000_consen 68 DVIIAHPGWGETLFLKDVFPDAPLIGYFEF 97 (171)
T ss_pred CEEEEcCCcchhhhHHHhCCCCcEEEEEEE
Confidence 9999998888899999999 9999997654
No 147
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=95.60 E-value=0.15 Score=37.76 Aligned_cols=81 Identities=14% Similarity=0.098 Sum_probs=52.5
Q ss_pred ccCcchhhhhhhcCCceeccccccchhhhHHhhhhhhc-eeEEeeccCCCccCHHHHHHHHHHHhCCHHH-HHHHHHHHH
Q 012744 352 HCGWNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWK-VGLRLERNQSGIIGREEIKNKVDQVLGDQNF-KARALKLKE 429 (457)
Q Consensus 352 HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG-~g~~l~~~~~~~~~~~~l~~~i~~~l~~~~~-~~~a~~l~~ 429 (457)
+|-..-+.|++++|+|+|+-+. ......+.+ | .++.. . +.+++.++|..+++|+.. ++.+++..+
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~--~~~~~~~-----~--~~~el~~~i~~ll~~~~~~~~ia~~a~~ 75 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFED--GEHIITY-----N--DPEELAEKIEYLLENPEERRRIAKNARE 75 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCC--CCeEEEE-----C--CHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 4555689999999999998755 222223222 4 34333 2 899999999999999853 333444444
Q ss_pred HHHhhhhcCCChHHHHHHHH
Q 012744 430 KALSSVREGGSSNKAIQNFV 449 (457)
Q Consensus 430 ~~~~~~~~~g~~~~~~~~~~ 449 (457)
.+++ .-+....+++++
T Consensus 76 ~v~~----~~t~~~~~~~il 91 (92)
T PF13524_consen 76 RVLK----RHTWEHRAEQIL 91 (92)
T ss_pred HHHH----hCCHHHHHHHHH
Confidence 4443 566666666654
No 148
>PHA01630 putative group 1 glycosyl transferase
Probab=95.55 E-value=0.75 Score=43.35 Aligned_cols=109 Identities=14% Similarity=0.061 Sum_probs=61.7
Q ss_pred cCCCch---hhccCCCccceee---ccC-cchhhhhhhcCCceecccccc--chhh---hHHhhhhh----------hce
Q 012744 333 SWSPQQ---KVLTHPSISCFMS---HCG-WNSTTEGVSNGVPFLCWPFFA--DQFM---NTTYICDV----------WKV 390 (457)
Q Consensus 333 ~~~pq~---~ll~~~~~~~~I~---HgG-~~s~~eal~~GvP~l~~P~~~--DQ~~---na~~v~~~----------lG~ 390 (457)
.++|+. .++..+|+ ++. ..| -.++.||+++|+|+|+.-..+ |.-. |+..+... -++
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~ 273 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHV 273 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCccc
Confidence 346654 47888998 763 233 468999999999999976432 2211 11111000 023
Q ss_pred eEEeeccCCCccCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHh
Q 012744 391 GLRLERNQSGIIGREEIKNKVDQVLGD---QNFKARALKLKEKALSSVREGGSSNKAIQNFVQSIK 453 (457)
Q Consensus 391 g~~l~~~~~~~~~~~~l~~~i~~~l~~---~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 453 (457)
|..+. .+.+++.+++.+++.| +.++++.+.-+....+ .-+-....+++.+-+.
T Consensus 274 G~~v~------~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~----~fs~~~ia~k~~~l~~ 329 (331)
T PHA01630 274 GYFLD------PDIEDAYQKLLEALANWTPEKKKENLEGRAILYRE----NYSYNAIAKMWEKILE 329 (331)
T ss_pred ccccC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHh
Confidence 44332 3678888888888877 4555554444444333 3454445555555444
No 149
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=94.96 E-value=0.63 Score=37.40 Aligned_cols=61 Identities=11% Similarity=0.144 Sum_probs=47.6
Q ss_pred CCCCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecC
Q 012744 1 MSSPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIP 66 (457)
Q Consensus 1 m~~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (457)
|++.+|++.+.++-+|-.-..-++..|.++|++|+++......+.+.+...+ .+.+++.++
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~-----~~~d~V~lS 61 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIE-----TDADAILVS 61 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----cCCCEEEEc
Confidence 8999999999999999999999999999999999999976654444333211 155555654
No 150
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=93.76 E-value=0.42 Score=47.13 Aligned_cols=101 Identities=10% Similarity=0.108 Sum_probs=70.6
Q ss_pred cCCCch---hhccCCCccceee---ccCc-chhhhhhhcCCc----eeccccccchhhhHHhhhhhhceeEEeeccCCCc
Q 012744 333 SWSPQQ---KVLTHPSISCFMS---HCGW-NSTTEGVSNGVP----FLCWPFFADQFMNTTYICDVWKVGLRLERNQSGI 401 (457)
Q Consensus 333 ~~~pq~---~ll~~~~~~~~I~---HgG~-~s~~eal~~GvP----~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~ 401 (457)
+.+++. ++++.+|+ ++. +-|+ .++.|++++|+| +|+--+.+ .+.. ++-|+.++ .
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G----~~~~----l~~gllVn-----P 406 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAG----AAQE----LNGALLVN-----P 406 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCC----ChHH----hCCcEEEC-----C
Confidence 456665 46888998 876 4475 478899999999 66554443 1221 34466664 3
Q ss_pred cCHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHh
Q 012744 402 IGREEIKNKVDQVLGDQ--NFKARALKLKEKALSSVREGGSSNKAIQNFVQSIK 453 (457)
Q Consensus 402 ~~~~~l~~~i~~~l~~~--~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 453 (457)
.+.++++++|.++++++ +.+++.+++.+.+.+ -+...-.++++.+|.
T Consensus 407 ~d~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~-----~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 407 YDIDGMADAIARALTMPLEEREERHRAMMDKLRK-----NDVQRWREDFLSDLN 455 (456)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhh
Confidence 68999999999999854 567777777777654 577777888887764
No 151
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=93.46 E-value=0.96 Score=35.31 Aligned_cols=103 Identities=13% Similarity=0.205 Sum_probs=61.4
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHHHH
Q 012744 5 HVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLLEK 84 (457)
Q Consensus 5 ~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (457)
|+++.+.++..|.....-++..|.++|++|+++......+.+.+...+ .+.+++.++-....
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~-----~~pdvV~iS~~~~~------------- 62 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKE-----EDADAIGLSGLLTT------------- 62 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----cCCCEEEEeccccc-------------
Confidence 588999999999999999999999999999998765444333322111 13444444321111
Q ss_pred HHHhcchHHHHHHHHHhcCCCC-CeeEEEecCCcchHHHHHHHcCCc
Q 012744 85 RLQVMPGKLEGLIEEIHGREGE-KTACLIADGAAGWAIEVAEKMKLR 130 (457)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~~~-~~D~vv~D~~~~~~~~~A~~lgiP 130 (457)
....+.++++.+++.. . +.-+++.-.........++..|+=
T Consensus 63 ----~~~~~~~~i~~l~~~~-~~~~~i~vGG~~~~~~~~~~~~~G~D 104 (119)
T cd02067 63 ----HMTLMKEVIEELKEAG-LDDIPVLVGGAIVTRDFKFLKEIGVD 104 (119)
T ss_pred ----cHHHHHHHHHHHHHcC-CCCCeEEEECCCCChhHHHHHHcCCe
Confidence 1123455555555532 2 333555554433334567777763
No 152
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=93.18 E-value=1.5 Score=37.67 Aligned_cols=117 Identities=14% Similarity=0.153 Sum_probs=60.1
Q ss_pred CEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCC-----CcchH
Q 012744 4 PHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWD-----DRSDM 78 (457)
Q Consensus 4 ~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 78 (457)
||||+..=-+. +---+..|+++|.+.||+|+++.+...+...... .+....++......+..... -...+
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~g~s----it~~~pl~~~~~~~~~~~~~~~~~~v~GTP 75 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGTGHS----ITLHKPLRVTEVEPGHDPGGVEAYAVSGTP 75 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTSTTS------SSSEEEEEEEE-TTCCSTTEEEEESS-H
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCccee----ecCCCCeEEEEEEecccCCCCCEEEEcCcH
Confidence 45666554444 4445889999998888999999997765433211 11122344433211111110 11222
Q ss_pred HHHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEec----------CCcc---hHHHHHHHcCCceEEEechh
Q 012744 79 RKLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIAD----------GAAG---WAIEVAEKMKLRRAVVVITS 138 (457)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D----------~~~~---~~~~~A~~lgiP~v~~~~~~ 138 (457)
.......+. .++.. .+||+||+- .+++ .++.-|...|||.|.++...
T Consensus 76 aDcv~~al~-------~~~~~------~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~~ 135 (196)
T PF01975_consen 76 ADCVKLALD-------GLLPD------KKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLDS 135 (196)
T ss_dssp HHHHHHHHH-------CTSTT------SS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEES
T ss_pred HHHHHHHHH-------hhhcc------CCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEeccc
Confidence 222222221 22112 469999973 2333 44556677899999987554
No 153
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=92.94 E-value=0.9 Score=38.05 Aligned_cols=116 Identities=15% Similarity=0.143 Sum_probs=61.3
Q ss_pred EEcCCCCcChHHHHHHHHHH-Hh-CCCeEEEEeCCcchh--HHHhhhcCCCCCCCCeEEEecCCCCCCCC-CcchHHHHH
Q 012744 8 VIPNPEQGHVIPLLELSQNL-AK-HGLRITFVNSEYNHK--RVLESLEGKNYIGEQIHLVSIPDGMEPWD-DRSDMRKLL 82 (457)
Q Consensus 8 ~~~~~~~GH~~p~~~la~~L-~~-~Gh~Vt~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 82 (457)
++..++.||..=++.|.+.+ .+ ..++..+++..+... .+...... ......+..+|......+ ...+....+
T Consensus 2 l~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~---~~~~~~~~~~~r~r~v~q~~~~~~~~~l 78 (170)
T PF08660_consen 2 LVVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKS---SSKRHKILEIPRAREVGQSYLTSIFTTL 78 (170)
T ss_pred EEEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHh---ccccceeeccceEEEechhhHhhHHHHH
Confidence 45568889999999999999 33 346666666544322 22211100 000113344442221111 111112222
Q ss_pred HHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcc--hHHHHHHHc------CCceEEEech
Q 012744 83 EKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAG--WAIEVAEKM------KLRRAVVVIT 137 (457)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~--~~~~~A~~l------giP~v~~~~~ 137 (457)
..+. ..+ ..+.+ .+||+||+..-.. ....+|..+ |.+.|.+-+.
T Consensus 79 ~~~~----~~~----~il~r---~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~ 130 (170)
T PF08660_consen 79 RAFL----QSL----RILRR---ERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESF 130 (170)
T ss_pred HHHH----HHH----HHHHH---hCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEee
Confidence 2221 112 22222 6899999998665 556678888 9999987543
No 154
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=91.61 E-value=0.68 Score=38.54 Aligned_cols=101 Identities=22% Similarity=0.222 Sum_probs=50.7
Q ss_pred CCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHHHHHHHhcchH
Q 012744 13 EQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLLEKRLQVMPGK 92 (457)
Q Consensus 13 ~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (457)
..|=-.-+..|+++|+++||+|+++++.......... ........ .... ......... ...
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~---------~~~~~~~~--~~~~---~~~~~~~~~-----~~~ 71 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEEL---------VKIFVKIP--YPIR---KRFLRSFFF-----MRR 71 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SSTE---------EEE---TT---SST---SS--HHHHH-----HHH
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhhc---------cceeeeee--cccc---cccchhHHH-----HHH
Confidence 4466677899999999999999999876543322210 01111111 0000 011111111 124
Q ss_pred HHHHHHHHhcCCCCCeeEEEecCCcc-hHHHHHHHcCCceEEEechhh
Q 012744 93 LEGLIEEIHGREGEKTACLIADGAAG-WAIEVAEKMKLRRAVVVITSA 139 (457)
Q Consensus 93 ~~~~~~~l~~~~~~~~D~vv~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 139 (457)
+.++++. .+||+|-+..... +...++-. ++|.+.......
T Consensus 72 ~~~~i~~------~~~DiVh~~~~~~~~~~~~~~~-~~~~v~~~H~~~ 112 (177)
T PF13439_consen 72 LRRLIKK------EKPDIVHIHGPPAFWIALLACR-KVPIVYTIHGPY 112 (177)
T ss_dssp HHHHHHH------HT-SEEECCTTHCCCHHHHHHH-CSCEEEEE-HHH
T ss_pred HHHHHHH------cCCCeEEecccchhHHHHHhcc-CCCEEEEeCCCc
Confidence 5555555 7899995554333 33333333 999998776554
No 155
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.38 E-value=0.51 Score=42.47 Aligned_cols=98 Identities=15% Similarity=0.154 Sum_probs=62.7
Q ss_pred CCceee-cCCCchhhccCCCccceeeccCcchhh-hhhhcCCceeccccccchhh--hHHhhhhhhceeEEeeccCCCcc
Q 012744 327 ARGQMI-SWSPQQKVLTHPSISCFMSHCGWNSTT-EGVSNGVPFLCWPFFADQFM--NTTYICDVWKVGLRLERNQSGII 402 (457)
Q Consensus 327 ~nv~~~-~~~pq~~ll~~~~~~~~I~HgG~~s~~-eal~~GvP~l~~P~~~DQ~~--na~~v~~~lG~g~~l~~~~~~~~ 402 (457)
+|..+. +|-...++|.++++ .|--. ||.. +++-.|||+|.+|-..-|+. .|.+-.+-||+.+.+-. -
T Consensus 294 dnc~l~lsqqsfadiLH~ada--algmA--GTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~-----~ 364 (412)
T COG4370 294 DNCSLWLSQQSFADILHAADA--ALGMA--GTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR-----P 364 (412)
T ss_pred CceEEEEeHHHHHHHHHHHHH--HHHhc--cchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC-----C
Confidence 455543 66666677777776 55444 3444 45789999999999998864 55555555688877753 2
Q ss_pred CHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHh
Q 012744 403 GREEIKNKVDQVLGDQNFKARALKL-KEKALS 433 (457)
Q Consensus 403 ~~~~l~~~i~~~l~~~~~~~~a~~l-~~~~~~ 433 (457)
.++.-..+..+++.|+.+...+++= ++++.+
T Consensus 365 ~aq~a~~~~q~ll~dp~r~~air~nGqrRiGq 396 (412)
T COG4370 365 EAQAAAQAVQELLGDPQRLTAIRHNGQRRIGQ 396 (412)
T ss_pred chhhHHHHHHHHhcChHHHHHHHhcchhhccC
Confidence 3333344444599999887777733 344443
No 156
>PLN02939 transferase, transferring glycosyl groups
Probab=91.21 E-value=4.8 Score=43.03 Aligned_cols=89 Identities=7% Similarity=0.099 Sum_probs=57.3
Q ss_pred cCCceeecCCCch---hhccCCCccceeecc---C-cchhhhhhhcCCceecccccc--chhhh--HHhh-hhhhceeEE
Q 012744 326 AARGQMISWSPQQ---KVLTHPSISCFMSHC---G-WNSTTEGVSNGVPFLCWPFFA--DQFMN--TTYI-CDVWKVGLR 393 (457)
Q Consensus 326 ~~nv~~~~~~pq~---~ll~~~~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~--DQ~~n--a~~v-~~~lG~g~~ 393 (457)
.++|.+..+.+.. .+++.+|+ ||... | -.+.+||+++|+|.|+....+ |.-.+ ...+ .+. +-|..
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg-~NGfL 912 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVEL-RNGFT 912 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCC-CceEE
Confidence 3568777777764 58988998 88643 2 248999999999998876533 21111 1111 121 56777
Q ss_pred eeccCCCccCHHHHHHHHHHHhC----CHHHHH
Q 012744 394 LERNQSGIIGREEIKNKVDQVLG----DQNFKA 422 (457)
Q Consensus 394 l~~~~~~~~~~~~l~~~i~~~l~----~~~~~~ 422 (457)
+.. -+++++.++|.+++. |+..++
T Consensus 913 f~~-----~D~eaLa~AL~rAL~~~~~dpe~~~ 940 (977)
T PLN02939 913 FLT-----PDEQGLNSALERAFNYYKRKPEVWK 940 (977)
T ss_pred ecC-----CCHHHHHHHHHHHHHHhccCHHHHH
Confidence 642 478899999988774 555443
No 157
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=91.05 E-value=2.8 Score=37.59 Aligned_cols=115 Identities=13% Similarity=0.144 Sum_probs=59.6
Q ss_pred CCCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecC-C-CCCCCCCcchHH
Q 012744 2 SSPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIP-D-GMEPWDDRSDMR 79 (457)
Q Consensus 2 ~~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~ 79 (457)
+||||++..=-+. |.--+.+|+++|.+.| +|+++.+.......... -+....+++..+. + +.....-...+.
T Consensus 4 ~~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~a----it~~~pl~~~~~~~~~~~~~y~v~GTPa 77 (257)
T PRK13932 4 KKPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHSGMSHA----MTLGVPLRIKEYQKNNRFFGYTVSGTPV 77 (257)
T ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCCCCccc----ccCCCCeEEEEEccCCCceEEEEcCcHH
Confidence 3677776553322 2245888999998888 79888886654332211 1122345555443 1 110000111222
Q ss_pred HHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEec----------CCcc---hHHHHHHHcCCceEEEec
Q 012744 80 KLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIAD----------GAAG---WAIEVAEKMKLRRAVVVI 136 (457)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D----------~~~~---~~~~~A~~lgiP~v~~~~ 136 (457)
...... +..+.. .+||+||+- .+++ .|+.-|..+|||.|.++-
T Consensus 78 DCV~la-----------l~~~~~---~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~ 133 (257)
T PRK13932 78 DCIKVA-----------LSHILP---EKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSL 133 (257)
T ss_pred HHHHHH-----------HHhhcC---CCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEc
Confidence 221111 112212 578998863 3333 455556778999999874
No 158
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=90.56 E-value=1.7 Score=40.44 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=34.0
Q ss_pred CEEEEEcC-CCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHH
Q 012744 4 PHVVVIPN-PEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVL 47 (457)
Q Consensus 4 ~~vl~~~~-~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~ 47 (457)
||++|+.. |+-|=-.-..++|-.++++|++|.++++...+....
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L~d 45 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHSLSD 45 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHHHH
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccHHH
Confidence 46666664 455999999999999999999999999888765433
No 159
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=90.54 E-value=19 Score=35.56 Aligned_cols=61 Identities=16% Similarity=0.173 Sum_probs=42.3
Q ss_pred hhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCCHHHHHHHH
Q 012744 357 STTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGDQNFKARAL 425 (457)
Q Consensus 357 s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~ 425 (457)
++.||+++|+|++..= +---+..|+. .--|...++ +.-....+++++.++..|++++.+..
T Consensus 381 v~IEAMa~glPvvAt~----~GGP~EiV~~-~~tG~l~dp---~~e~~~~~a~~~~kl~~~p~l~~~~~ 441 (495)
T KOG0853|consen 381 VPIEAMACGLPVVATN----NGGPAEIVVH-GVTGLLIDP---GQEAVAELADALLKLRRDPELWARMG 441 (495)
T ss_pred eeHHHHhcCCCEEEec----CCCceEEEEc-CCcceeeCC---chHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 7899999999999763 3334455555 256666653 22233479999999999998755443
No 160
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=90.25 E-value=2.1 Score=37.03 Aligned_cols=106 Identities=13% Similarity=0.167 Sum_probs=65.8
Q ss_pred CCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHH
Q 012744 3 SPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLL 82 (457)
Q Consensus 3 ~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (457)
+.|+++.+.++-.|-....-++..|.++|++|+++......+.+.+...+ .+.+++.++-...
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~-----~~~d~v~lS~~~~------------ 144 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKE-----HKPDILGLSALMT------------ 144 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----cCCCEEEEecccc------------
Confidence 56899999999999999999999999999999998865444433332111 1455555542211
Q ss_pred HHHHHhcchHHHHHHHHHhcCCCC--CeeEEEecCCcchHHHHHHHcCCceEE
Q 012744 83 EKRLQVMPGKLEGLIEEIHGREGE--KTACLIADGAAGWAIEVAEKMKLRRAV 133 (457)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~--~~D~vv~D~~~~~~~~~A~~lgiP~v~ 133 (457)
.....+.++++.+++.. . ++.++|.-.. .....++.+|.=.+.
T Consensus 145 -----~~~~~~~~~i~~lr~~~-~~~~~~i~vGG~~--~~~~~~~~~GaD~~~ 189 (201)
T cd02070 145 -----TTMGGMKEVIEALKEAG-LRDKVKVMVGGAP--VNQEFADEIGADGYA 189 (201)
T ss_pred -----ccHHHHHHHHHHHHHCC-CCcCCeEEEECCc--CCHHHHHHcCCcEEE
Confidence 11234556666666532 2 3345555532 234577887754443
No 161
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=89.86 E-value=0.68 Score=46.46 Aligned_cols=76 Identities=17% Similarity=0.299 Sum_probs=57.4
Q ss_pred CCceeecCCC--c-hhhccCCCccceeecc---CcchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCCC
Q 012744 327 ARGQMISWSP--Q-QKVLTHPSISCFMSHC---GWNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSG 400 (457)
Q Consensus 327 ~nv~~~~~~p--q-~~ll~~~~~~~~I~Hg---G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~ 400 (457)
..|.+.++.. + ...+.++++ +|.=+ |.+|..||+.+|+|+| .......|+.. .-|..+.
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~-~NG~li~----- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHN-KNGYIID----- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcC-CCcEEeC-----
Confidence 4667778887 4 367877887 88766 6679999999999999 33344555653 5666662
Q ss_pred ccCHHHHHHHHHHHhCCHH
Q 012744 401 IIGREEIKNKVDQVLGDQN 419 (457)
Q Consensus 401 ~~~~~~l~~~i~~~l~~~~ 419 (457)
+..+|.++|..+|.++.
T Consensus 474 --d~~~l~~al~~~L~~~~ 490 (519)
T TIGR03713 474 --DISELLKALDYYLDNLK 490 (519)
T ss_pred --CHHHHHHHHHHHHhCHH
Confidence 78999999999999984
No 162
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=89.86 E-value=1.7 Score=34.78 Aligned_cols=47 Identities=17% Similarity=0.171 Sum_probs=40.5
Q ss_pred CCCCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHH
Q 012744 1 MSSPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVL 47 (457)
Q Consensus 1 m~~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~ 47 (457)
|+|.||++.+.|.-||-....-+++.|++.|.+|.........+.+.
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v 56 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAV 56 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHH
Confidence 46899999999988999999999999999999999987655544443
No 163
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=88.71 E-value=3.4 Score=35.60 Aligned_cols=104 Identities=12% Similarity=0.088 Sum_probs=65.6
Q ss_pred CCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHH
Q 012744 3 SPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLL 82 (457)
Q Consensus 3 ~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (457)
+.+|++.+.++-.|-....-++..|..+|++|++++.....+.+.+.... .+.+++.++-.+..
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~-----~~pd~v~lS~~~~~----------- 147 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKK-----EKPLMLTGSALMTT----------- 147 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH-----cCCCEEEEcccccc-----------
Confidence 46899999999999999999999999999999999876654444333211 14555555422211
Q ss_pred HHHHHhcchHHHHHHHHHhcCC-CCCeeEEEecCCcchHHHHHHHcCCc
Q 012744 83 EKRLQVMPGKLEGLIEEIHGRE-GEKTACLIADGAAGWAIEVAEKMKLR 130 (457)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~-~~~~D~vv~D~~~~~~~~~A~~lgiP 130 (457)
....++++++.+++.+ ..++.++|.-... ...+++++|.=
T Consensus 148 ------~~~~~~~~i~~l~~~~~~~~v~i~vGG~~~--~~~~~~~~gad 188 (197)
T TIGR02370 148 ------TMYGQKDINDKLKEEGYRDSVKFMVGGAPV--TQDWADKIGAD 188 (197)
T ss_pred ------CHHHHHHHHHHHHHcCCCCCCEEEEEChhc--CHHHHHHhCCc
Confidence 1123456666666542 0234556655433 34567777653
No 164
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=88.68 E-value=2 Score=42.60 Aligned_cols=101 Identities=13% Similarity=0.135 Sum_probs=63.5
Q ss_pred ecCCCch---hhccCCCccceee---ccCc-chhhhhhhcCCc----eeccccccchhhhHHhhhhhhceeEEeeccCCC
Q 012744 332 ISWSPQQ---KVLTHPSISCFMS---HCGW-NSTTEGVSNGVP----FLCWPFFADQFMNTTYICDVWKVGLRLERNQSG 400 (457)
Q Consensus 332 ~~~~pq~---~ll~~~~~~~~I~---HgG~-~s~~eal~~GvP----~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~ 400 (457)
.+++++. .+++.+|+ +|. +-|+ .++.||+++|+| +|+.-..+ .+ .. ..-|+.++
T Consensus 346 ~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G----~~---~~-~~~g~lv~----- 410 (460)
T cd03788 346 YRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG----AA---EE-LSGALLVN----- 410 (460)
T ss_pred eCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEecccc----ch---hh-cCCCEEEC-----
Confidence 4677775 46888998 774 3455 477999999999 54432221 11 11 13355553
Q ss_pred ccCHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 012744 401 IIGREEIKNKVDQVLGDQ--NFKARALKLKEKALSSVREGGSSNKAIQNFVQSI 452 (457)
Q Consensus 401 ~~~~~~l~~~i~~~l~~~--~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 452 (457)
..+.++++++|.++++++ +.+++.++.++.+. .-+...-.+.++.+|
T Consensus 411 p~d~~~la~ai~~~l~~~~~e~~~~~~~~~~~v~-----~~~~~~w~~~~l~~l 459 (460)
T cd03788 411 PYDIDEVADAIHRALTMPLEERRERHRKLREYVR-----THDVQAWANSFLDDL 459 (460)
T ss_pred CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----hCCHHHHHHHHHHhh
Confidence 357899999999999865 33333444444443 356666777777665
No 165
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=88.28 E-value=20 Score=32.99 Aligned_cols=87 Identities=18% Similarity=0.293 Sum_probs=57.1
Q ss_pred CCceeecCCCc---hhhccCCCccceeec---cCcc-hhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCC
Q 012744 327 ARGQMISWSPQ---QKVLTHPSISCFMSH---CGWN-STTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQS 399 (457)
Q Consensus 327 ~nv~~~~~~pq---~~ll~~~~~~~~I~H---gG~~-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~ 399 (457)
.++...+++++ ..++..+++ ++.. .|.| ++.|++++|+|++..... .....+.+ -+.|. +..
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~----~~~e~~~~-~~~g~-~~~--- 325 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDVG----GIPEVVED-GETGL-LVP--- 325 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCCC----ChHHHhcC-CCceE-ecC---
Confidence 66777888882 347777777 7766 3554 469999999999765443 23334343 13466 431
Q ss_pred CccCHHHHHHHHHHHhCCHHHHHHHH
Q 012744 400 GIIGREEIKNKVDQVLGDQNFKARAL 425 (457)
Q Consensus 400 ~~~~~~~l~~~i~~~l~~~~~~~~a~ 425 (457)
....+++.+++..++++.+.++...
T Consensus 326 -~~~~~~~~~~i~~~~~~~~~~~~~~ 350 (381)
T COG0438 326 -PGDVEELADALEQLLEDPELREELG 350 (381)
T ss_pred -CCCHHHHHHHHHHHhcCHHHHHHHH
Confidence 1268999999999999884444443
No 166
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=87.05 E-value=11 Score=32.10 Aligned_cols=99 Identities=10% Similarity=0.095 Sum_probs=60.8
Q ss_pred CCCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeC---C-cc--hhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCc
Q 012744 2 SSPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNS---E-YN--HKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDR 75 (457)
Q Consensus 2 ~~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~---~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (457)
++-.|.+++..+.|=....+.+|-+.+.+|++|.++=. . .. ...+... +++.+.....++....
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l--------~~v~~~~~g~~~~~~~-- 90 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFG--------GGVEFHVMGTGFTWET-- 90 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcC--------CCcEEEECCCCCcccC--
Confidence 45688999999999999999999999999999998842 1 11 1122221 3788887765432221
Q ss_pred chHHHHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCc
Q 012744 76 SDMRKLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAA 117 (457)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~ 117 (457)
.+..... ......++...+.+.. .++|+||-|...
T Consensus 91 ~~~~e~~----~~~~~~~~~a~~~l~~---~~ydlvVLDEi~ 125 (191)
T PRK05986 91 QDRERDI----AAAREGWEEAKRMLAD---ESYDLVVLDELT 125 (191)
T ss_pred CCcHHHH----HHHHHHHHHHHHHHhC---CCCCEEEEehhh
Confidence 1111111 1112223333333333 789999999754
No 167
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=86.55 E-value=2.9 Score=37.61 Aligned_cols=90 Identities=12% Similarity=0.212 Sum_probs=52.4
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchh-HHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHHH
Q 012744 5 HVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHK-RVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLLE 83 (457)
Q Consensus 5 ~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (457)
+|+++ |++|. -..|++.|.++||+|+..+...... .+... .+...+. ..+
T Consensus 2 ~ILvl--GGT~e---gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~--------g~~~v~~--g~l-------------- 52 (256)
T TIGR00715 2 TVLLM--GGTVD---SRAIAKGLIAQGIEILVTVTTSEGKHLYPIH--------QALTVHT--GAL-------------- 52 (256)
T ss_pred eEEEE--echHH---HHHHHHHHHhCCCeEEEEEccCCcccccccc--------CCceEEE--CCC--------------
Confidence 44443 44453 6789999999999999887665433 22221 0112111 111
Q ss_pred HHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchH-------HHHHHHcCCceEEEe
Q 012744 84 KRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWA-------IEVAEKMKLRRAVVV 135 (457)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~-------~~~A~~lgiP~v~~~ 135 (457)
+ ...+.+++.. .++|+| .|...+.+ ..+++.+|||++.+-
T Consensus 53 ---~--~~~l~~~l~~------~~i~~V-IDAtHPfA~~is~~a~~a~~~~~ipylR~e 99 (256)
T TIGR00715 53 ---D--PQELREFLKR------HSIDIL-VDATHPFAAQITTNATAVCKELGIPYVRFE 99 (256)
T ss_pred ---C--HHHHHHHHHh------cCCCEE-EEcCCHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 0 0124455555 788854 56666654 446788999999963
No 168
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=86.32 E-value=13 Score=33.34 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=19.3
Q ss_pred HHHHHHHHHhCCCeEEEEeCCcchh
Q 012744 20 LLELSQNLAKHGLRITFVNSEYNHK 44 (457)
Q Consensus 20 ~~~la~~L~~~Gh~Vt~~~~~~~~~ 44 (457)
+.+|+++|.+ +|+|+++.+.....
T Consensus 16 l~aL~~~l~~-~~~V~VvAP~~~~S 39 (253)
T PRK13933 16 INTLAELLSK-YHEVIIVAPENQRS 39 (253)
T ss_pred HHHHHHHHHh-CCcEEEEccCCCCc
Confidence 8889999964 68999998876654
No 169
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=86.25 E-value=12 Score=29.27 Aligned_cols=42 Identities=12% Similarity=0.236 Sum_probs=36.2
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHH
Q 012744 5 HVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRV 46 (457)
Q Consensus 5 ~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~ 46 (457)
|+++.+.++-.|-.-..-++.-|..+|++|+++......+.+
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~ 42 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEI 42 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 688999999999999999999999999999999875543333
No 170
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=86.21 E-value=5.1 Score=35.74 Aligned_cols=100 Identities=14% Similarity=0.047 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCC--CCCCCCCcchHHHHHHHHHHhcchHHHH
Q 012744 18 IPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPD--GMEPWDDRSDMRKLLEKRLQVMPGKLEG 95 (457)
Q Consensus 18 ~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (457)
--+.+|+++|.+.| +|+++.+...+...... .+....+++..++. +.........+.......+ ..
T Consensus 14 ~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~a----it~~~pl~~~~~~~~~~~~~~~v~GTPaDcv~~gl-------~~ 81 (244)
T TIGR00087 14 PGIRALYQALKELG-EVTVVAPARQRSGTGHS----LTLFEPLRVGQVKVKNGAHIYAVDGTPTDCVILGI-------NE 81 (244)
T ss_pred HhHHHHHHHHHhCC-CEEEEeCCCCccccccC----cCCCCCeEEEEeccCCCccEEEEcCcHHHHHHHHH-------HH
Confidence 34788999999888 89999887765443321 12223455555431 1100001112222222211 11
Q ss_pred HHHHHhcCCCCCeeEEEecC----------Ccc---hHHHHHHHcCCceEEEec
Q 012744 96 LIEEIHGREGEKTACLIADG----------AAG---WAIEVAEKMKLRRAVVVI 136 (457)
Q Consensus 96 ~~~~l~~~~~~~~D~vv~D~----------~~~---~~~~~A~~lgiP~v~~~~ 136 (457)
+ .. .+||+||+-. +++ .|+.-|..+|||.+.++-
T Consensus 82 l----~~---~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~ 128 (244)
T TIGR00087 82 L----MP---EVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISL 128 (244)
T ss_pred h----cc---CCCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEe
Confidence 1 11 5688888632 233 455566778999999874
No 171
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=86.00 E-value=19 Score=33.18 Aligned_cols=80 Identities=11% Similarity=0.094 Sum_probs=57.8
Q ss_pred CCcee-ecCCCc---hhhccCCCccceeec--cCcchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCCC
Q 012744 327 ARGQM-ISWSPQ---QKVLTHPSISCFMSH--CGWNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSG 400 (457)
Q Consensus 327 ~nv~~-~~~~pq---~~ll~~~~~~~~I~H--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~ 400 (457)
+++.+ .+++|. .++|+.||++.|+|+ =|.||++-.++.|+|+++- -+-+.|... .+ .|+-+-... +
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~---r~n~fwqdl-~e-~gv~Vlf~~---d 277 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLS---RDNPFWQDL-TE-QGLPVLFTG---D 277 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEe---cCCchHHHH-Hh-CCCeEEecC---C
Confidence 67775 478874 479999999888876 4899999999999999865 333444443 34 487776653 6
Q ss_pred ccCHHHHHHHHHHH
Q 012744 401 IIGREEIKNKVDQV 414 (457)
Q Consensus 401 ~~~~~~l~~~i~~~ 414 (457)
.++...+.++=+++
T Consensus 278 ~L~~~~v~e~~rql 291 (322)
T PRK02797 278 DLDEDIVREAQRQL 291 (322)
T ss_pred cccHHHHHHHHHHH
Confidence 67888777764443
No 172
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=85.93 E-value=14 Score=33.39 Aligned_cols=101 Identities=11% Similarity=0.072 Sum_probs=52.9
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCC-CCCCCCCcchHHHHHHHHHHhcchHHH
Q 012744 16 HVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPD-GMEPWDDRSDMRKLLEKRLQVMPGKLE 94 (457)
Q Consensus 16 H~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (457)
|.--+.+|+++|.+.| +|+++.+........... +....++...+.. +.....-...+.......+
T Consensus 12 ~apGi~aL~~al~~~g-~V~VvAP~~eqSg~g~ai----T~~~pl~~~~~~~~~~~~y~v~GTPaDCV~lal-------- 78 (266)
T PRK13934 12 HSPGLRLLYEFVSPLG-EVDVVAPETPKSATGLGI----TLHKPLRMYEVDLCGFKVYATSGTPSDTIYLAT-------- 78 (266)
T ss_pred CCHHHHHHHHHHHhCC-cEEEEccCCCCccccccc----cCCCCcEEEEeccCCcceEEeCCCHHHHHHHHH--------
Confidence 3455889999998887 799888766543332111 1112344444431 1100001122222222111
Q ss_pred HHHHHHhcCCCCCeeEEEe----------c-CCcc---hHHHHHHHcCCceEEEec
Q 012744 95 GLIEEIHGREGEKTACLIA----------D-GAAG---WAIEVAEKMKLRRAVVVI 136 (457)
Q Consensus 95 ~~~~~l~~~~~~~~D~vv~----------D-~~~~---~~~~~A~~lgiP~v~~~~ 136 (457)
..+ . .+||+||+ | .+++ .|+.-|..+|||.+.+|-
T Consensus 79 ---~~l-~---~~pDLViSGIN~G~NlG~d~v~ySGTVgAA~Ea~~~GIPsIAvS~ 127 (266)
T PRK13934 79 ---YGL-G---RKYDLVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPAVAYSA 127 (266)
T ss_pred ---Hhc-c---CCCCeEEecCccCCCCCcCcccccHhHHHHHHHHhcCCCEEEEec
Confidence 122 2 67899986 4 2333 445556778999999875
No 173
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=85.81 E-value=1.3 Score=35.14 Aligned_cols=45 Identities=13% Similarity=0.101 Sum_probs=37.2
Q ss_pred CEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhh
Q 012744 4 PHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLES 49 (457)
Q Consensus 4 ~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~ 49 (457)
+||++...|+.+=+. ...+.++|.++|++|.++.++.....+...
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~ 45 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTPE 45 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhhh
Confidence 578888888766666 999999999999999999998888777765
No 174
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=85.69 E-value=13 Score=33.30 Aligned_cols=39 Identities=10% Similarity=0.168 Sum_probs=24.7
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhH
Q 012744 5 HVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKR 45 (457)
Q Consensus 5 ~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~ 45 (457)
|||+..=-+. |.--+.+|+++|.+ +|+|+++.+......
T Consensus 2 ~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qSg 40 (253)
T PRK13935 2 NILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERSA 40 (253)
T ss_pred eEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCcc
Confidence 4554442222 33347888999964 689999988766543
No 175
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=85.17 E-value=3.8 Score=43.61 Aligned_cols=97 Identities=14% Similarity=0.130 Sum_probs=65.5
Q ss_pred hhccCCCccceeec---cCcc-hhhhhhhcCCc---eeccccccchhhhHHhhhhhhc-eeEEeeccCCCccCHHHHHHH
Q 012744 339 KVLTHPSISCFMSH---CGWN-STTEGVSNGVP---FLCWPFFADQFMNTTYICDVWK-VGLRLERNQSGIIGREEIKNK 410 (457)
Q Consensus 339 ~ll~~~~~~~~I~H---gG~~-s~~eal~~GvP---~l~~P~~~DQ~~na~~v~~~lG-~g~~l~~~~~~~~~~~~l~~~ 410 (457)
++++.+++ |+.- -|+| +..|++++|+| ++++.-+. -.+.. +| -|+.++ ..+.++++++
T Consensus 371 aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~---G~~~~----l~~~allVn-----P~D~~~lA~A 436 (797)
T PLN03063 371 ALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFA---GAGQS----LGAGALLVN-----PWNITEVSSA 436 (797)
T ss_pred HHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCc---Cchhh----hcCCeEEEC-----CCCHHHHHHH
Confidence 68888998 8855 4876 67799999999 44443221 12221 34 467774 3689999999
Q ss_pred HHHHhC-CH-HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhc
Q 012744 411 VDQVLG-DQ-NFKARALKLKEKALSSVREGGSSNKAIQNFVQSIKQ 454 (457)
Q Consensus 411 i~~~l~-~~-~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 454 (457)
|.++|+ ++ +.+++.+++.+.+.+ -+...-.+.|++.|.+
T Consensus 437 I~~aL~m~~~er~~r~~~~~~~v~~-----~~~~~Wa~~fl~~l~~ 477 (797)
T PLN03063 437 IKEALNMSDEERETRHRHNFQYVKT-----HSAQKWADDFMSELND 477 (797)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhh-----CCHHHHHHHHHHHHHH
Confidence 999998 44 455666666666654 4566667777777654
No 176
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=85.17 E-value=15 Score=36.15 Aligned_cols=135 Identities=14% Similarity=0.191 Sum_probs=83.4
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHhhc-CCcEEEEEcCCCCCCCcCCCchhHH--HHhcCCceee-cCCCc--hhhcc
Q 012744 269 NSVIYVAFGSHTVLEQNQFQELALGLEIC-NRSFLWVVRPDITNDANDAYPEGFR--ERVAARGQMI-SWSPQ--QKVLT 342 (457)
Q Consensus 269 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~nv~~~-~~~pq--~~ll~ 342 (457)
..++++| +.+.+..+....+.. +..+=+..+.. ..+.+. ++. +|+.+. ++.++ .+++.
T Consensus 283 ~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te--------~s~kL~~L~~y-~nvvly~~~~~~~l~~ly~ 346 (438)
T TIGR02919 283 KQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTE--------MSSKLMSLDKY-DNVKLYPNITTQKIQELYQ 346 (438)
T ss_pred ccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCc--------ccHHHHHHHhc-CCcEEECCcChHHHHHHHH
Confidence 3467776 245555555555444 45554433322 112221 233 777765 77873 47999
Q ss_pred CCCccceeeccC--cchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCCHH-
Q 012744 343 HPSISCFMSHCG--WNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGDQN- 419 (457)
Q Consensus 343 ~~~~~~~I~HgG--~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~~~- 419 (457)
.|++-+-|+||. ..++.||+.+|+|++..=...... ..+.. |.... .-+.+++.++|..+|.|++
T Consensus 347 ~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~---~~i~~----g~l~~-----~~~~~~m~~~i~~lL~d~~~ 414 (438)
T TIGR02919 347 TCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNR---DFIAS----ENIFE-----HNEVDQLISKLKDLLNDPNQ 414 (438)
T ss_pred hccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCc---ccccC----Cceec-----CCCHHHHHHHHHHHhcCHHH
Confidence 999988889987 479999999999999764432211 11111 33342 2368999999999999984
Q ss_pred HHHHHHHHHHHH
Q 012744 420 FKARALKLKEKA 431 (457)
Q Consensus 420 ~~~~a~~l~~~~ 431 (457)
++++..+-++.+
T Consensus 415 ~~~~~~~q~~~a 426 (438)
T TIGR02919 415 FRELLEQQREHA 426 (438)
T ss_pred HHHHHHHHHHHh
Confidence 555555544443
No 177
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=85.11 E-value=1.1 Score=36.69 Aligned_cols=57 Identities=12% Similarity=0.250 Sum_probs=45.9
Q ss_pred CCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCC
Q 012744 3 SPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDG 68 (457)
Q Consensus 3 ~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (457)
.+||++.-.|+.|--.-++.|++.|.++|++|-=+-++.-.+.-... ||+.+++..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~---------GF~Ivdl~tg 61 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRI---------GFKIVDLATG 61 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEe---------eeEEEEccCC
Confidence 46899999999999999999999999999999876666655444433 7888888643
No 178
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=84.89 E-value=2.9 Score=31.11 Aligned_cols=83 Identities=16% Similarity=0.169 Sum_probs=49.0
Q ss_pred HHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcc-hHHHHHHHHHHhcchHHHHHHH
Q 012744 20 LLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRS-DMRKLLEKRLQVMPGKLEGLIE 98 (457)
Q Consensus 20 ~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 98 (457)
++++|+.|.+.||++ +.+......+.+. |+....+.+.....+... +. .+++
T Consensus 2 ~~~~a~~l~~lG~~i--~AT~gTa~~L~~~---------Gi~~~~v~~~~~~~~~~~g~~----------------~i~~ 54 (95)
T PF02142_consen 2 IVPLAKRLAELGFEI--YATEGTAKFLKEH---------GIEVTEVVNKIGEGESPDGRV----------------QIMD 54 (95)
T ss_dssp HHHHHHHHHHTTSEE--EEEHHHHHHHHHT---------T--EEECCEEHSTG-GGTHCH----------------HHHH
T ss_pred HHHHHHHHHHCCCEE--EEChHHHHHHHHc---------CCCceeeeeecccCccCCchh----------------HHHH
Confidence 578999999999665 4566777888877 777555432111110000 00 3444
Q ss_pred HHhcCCCCCeeEEEecCCcchH---------HHHHHHcCCceE
Q 012744 99 EIHGREGEKTACLIADGAAGWA---------IEVAEKMKLRRA 132 (457)
Q Consensus 99 ~l~~~~~~~~D~vv~D~~~~~~---------~~~A~~lgiP~v 132 (457)
.++. .+.|+||..+..... ..+|...+||++
T Consensus 55 ~i~~---~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 55 LIKN---GKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHT---TSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred HHHc---CCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 4444 899999988654421 457788899986
No 179
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=84.32 E-value=3.8 Score=38.19 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=34.0
Q ss_pred CEEEEEcCC-CCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHH
Q 012744 4 PHVVVIPNP-EQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRV 46 (457)
Q Consensus 4 ~~vl~~~~~-~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~ 46 (457)
+|++|++.= +-|=-.-..++|-.|++.|.+|.++++.+.+...
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~ 45 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLG 45 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchH
Confidence 577777754 4599888999999999999998888877655443
No 180
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=84.20 E-value=36 Score=31.78 Aligned_cols=262 Identities=12% Similarity=0.066 Sum_probs=129.7
Q ss_pred CCeeEEEecCCcchHHHHHH-HcCCceEEEechhhHHHHHHhhhhhhhhccCCCCCCCCccccccccCCCCCCCcccccc
Q 012744 106 EKTACLIADGAAGWAIEVAE-KMKLRRAVVVITSAATVALTFSIPKLIEDGVINSNGTPIKEQMIQLAPNMPAISTGELF 184 (457)
Q Consensus 106 ~~~D~vv~D~~~~~~~~~A~-~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (457)
..||+.|-...++....+-+ ..++|++.+...|.......-. +.. +...
T Consensus 149 ~~Pdi~IDtMGY~fs~p~~r~l~~~~V~aYvHYP~iS~DML~~---l~q---------------------------rq~s 198 (465)
T KOG1387|consen 149 FPPDIFIDTMGYPFSYPIFRRLRRIPVVAYVHYPTISTDMLKK---LFQ---------------------------RQKS 198 (465)
T ss_pred CCchheEecCCCcchhHHHHHHccCceEEEEecccccHHHHHH---HHh---------------------------hhhc
Confidence 68999887777776655555 6689999987666543332211 000 0000
Q ss_pred ccccCCcchhhHHHHHHHHHHHhh-hcCcEEEEcCcccccchhhccCCc-eeeeCcccCCCCCCCCCCCCCCCcchhhHH
Q 012744 185 WTGIGDLTMQKFFFDFMVKNMRAT-RAADFQLCNSTYELEGGAFSMIPE-LLPIGPLLASNRLGNSAGYFLPEDSKCLEW 262 (457)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~s~~~le~~~~~~~~~-~~~vGpl~~~~~~~~~~~~~~~~~~~l~~~ 262 (457)
..+ ....-..++.|.....+. ..++.+++|+.+.=..-..-|..+ +..|=|-+... +|++-
T Consensus 199 -~~l--~~~KlaY~rlFa~lY~~~G~~ad~vm~NssWT~nHI~qiW~~~~~~iVyPPC~~e--------------~lks~ 261 (465)
T KOG1387|consen 199 -GIL--VWGKLAYWRLFALLYQSAGSKADIVMTNSSWTNNHIKQIWQSNTCSIVYPPCSTE--------------DLKSK 261 (465)
T ss_pred -chh--hhHHHHHHHHHHHHHHhccccceEEEecchhhHHHHHHHhhccceeEEcCCCCHH--------------HHHHH
Confidence 001 111223456666666555 788999999998644332223221 22222222211 12222
Q ss_pred hccCCCCeEEEEEeCCcccCCHHH-HH--HHHHHHhhc---CCc-EEEEEcCCCCCCCcCCCc--hhHHH--HhcCCcee
Q 012744 263 LDQRQANSVIYVAFGSHTVLEQNQ-FQ--ELALGLEIC---NRS-FLWVVRPDITNDANDAYP--EGFRE--RVAARGQM 331 (457)
Q Consensus 263 l~~~~~~~~v~vs~Gs~~~~~~~~-~~--~~~~a~~~~---~~~-~i~~~~~~~~~~~~~~~~--~~~~~--~~~~nv~~ 331 (457)
....+.+-+..+++|-.-.-+.+. ++ ++....... ..+ -+..+++.-..++++.+. +...+ +++++|..
T Consensus 262 ~~te~~r~~~ll~l~Q~RPEKnH~~Lql~Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~~v~F 341 (465)
T KOG1387|consen 262 FGTEGERENQLLSLAQFRPEKNHKILQLFALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIPKHVQF 341 (465)
T ss_pred hcccCCcceEEEEEeecCcccccHHHHHHHHHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCccceEE
Confidence 222233446777777542111111 22 222221111 112 234444431111111110 00111 25678888
Q ss_pred ecCCCchh---hccCCCccceee-----ccCcchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeec----cC-
Q 012744 332 ISWSPQQK---VLTHPSISCFMS-----HCGWNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLER----NQ- 398 (457)
Q Consensus 332 ~~~~pq~~---ll~~~~~~~~I~-----HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~----~~- 398 (457)
...+|+.+ +|..|.+ -|| |=|. +|.|.+++|.=.|+-- -.|..++. ++
T Consensus 342 ~~N~Py~~lv~lL~~a~i--Gvh~MwNEHFGI-sVVEyMAAGlIpi~h~----------------SgGP~lDIV~~~~G~ 402 (465)
T KOG1387|consen 342 EKNVPYEKLVELLGKATI--GVHTMWNEHFGI-SVVEYMAAGLIPIVHN----------------SGGPLLDIVTPWDGE 402 (465)
T ss_pred EecCCHHHHHHHhcccee--ehhhhhhhhcch-hHHHHHhcCceEEEeC----------------CCCCceeeeeccCCc
Confidence 88899874 6666665 332 3333 7899999997554331 22222221 00
Q ss_pred -C--CccCHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHh
Q 012744 399 -S--GIIGREEIKNKVDQVLGDQ-----NFKARALKLKEKALS 433 (457)
Q Consensus 399 -~--~~~~~~~l~~~i~~~l~~~-----~~~~~a~~l~~~~~~ 433 (457)
. -..|.++-+++|.+++... .+|++|++-.++|.+
T Consensus 403 ~tGFla~t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFsE 445 (465)
T KOG1387|consen 403 TTGFLAPTDEEYAEAILKIVKLNYDERNMMRRNARKSLARFGE 445 (465)
T ss_pred cceeecCChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhH
Confidence 0 1247788899998888643 477888877777765
No 181
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=83.58 E-value=7.6 Score=35.07 Aligned_cols=59 Identities=17% Similarity=0.168 Sum_probs=39.6
Q ss_pred CCCCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCC
Q 012744 1 MSSPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGME 70 (457)
Q Consensus 1 m~~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (457)
|.++||+++.+++...-. ..+++|.++|.+|.++......+.... ...++..-+|-+..
T Consensus 1 ~~~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~~~~~~~~~--------l~~~DgLvipGGfs 59 (261)
T PRK01175 1 MESIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHINDLAAERKS--------VSDYDCLVIPGGFS 59 (261)
T ss_pred CCCCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeeccccccccc--------hhhCCEEEECCCCC
Confidence 788999999998885433 557899899999998876432111000 12567777776643
No 182
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=83.50 E-value=2.1 Score=33.26 Aligned_cols=39 Identities=8% Similarity=0.113 Sum_probs=27.2
Q ss_pred CEEEEEcCCCCc---ChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012744 4 PHVVVIPNPEQG---HVIPLLELSQNLAKHGLRITFVNSEYN 42 (457)
Q Consensus 4 ~~vl~~~~~~~G---H~~p~~~la~~L~~~Gh~Vt~~~~~~~ 42 (457)
|||+|+--|-.+ .-...++|+.+-++|||+|.++.....
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL 42 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDL 42 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcE
Confidence 577777766443 446789999999999999999987663
No 183
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=83.49 E-value=27 Score=32.70 Aligned_cols=82 Identities=10% Similarity=0.090 Sum_probs=61.2
Q ss_pred CCcee-ecCCCch---hhccCCCccceeec--cCcchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCCC
Q 012744 327 ARGQM-ISWSPQQ---KVLTHPSISCFMSH--CGWNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSG 400 (457)
Q Consensus 327 ~nv~~-~~~~pq~---~ll~~~~~~~~I~H--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~ 400 (457)
+++.+ .+++|.+ ++|+.|+++.|.|. =|+|+++-.|+.|+|++.- -+-+.+-. +.+ .|+=+... ++
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~~~-l~~-~~ipVlf~---~d 316 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFWQD-LKE-QGIPVLFY---GD 316 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHHHH-HHh-CCCeEEec---cc
Confidence 47765 4788854 69999999777664 5899999999999999865 33344433 355 47777665 36
Q ss_pred ccCHHHHHHHHHHHhC
Q 012744 401 IIGREEIKNKVDQVLG 416 (457)
Q Consensus 401 ~~~~~~l~~~i~~~l~ 416 (457)
.++.+.|+++=+++..
T Consensus 317 ~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 317 ELDEALVREAQRQLAN 332 (360)
T ss_pred cCCHHHHHHHHHHHhh
Confidence 7999999999888774
No 184
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=83.15 E-value=14 Score=31.95 Aligned_cols=104 Identities=13% Similarity=0.069 Sum_probs=55.5
Q ss_pred CEEEEEcCCCCcChHHHHHHHHHHHhCC--CeEEEEeCCcc----hhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcch
Q 012744 4 PHVVVIPNPEQGHVIPLLELSQNLAKHG--LRITFVNSEYN----HKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSD 77 (457)
Q Consensus 4 ~~vl~~~~~~~GH~~p~~~la~~L~~~G--h~Vt~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (457)
+||+++..|..+= +.++.+++.+.+ ++|.++.+... .+...+. |+.+..++..-...
T Consensus 2 ~ki~vl~sg~gs~---~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~---------gIp~~~~~~~~~~~----- 64 (200)
T PRK05647 2 KRIVVLASGNGSN---LQAIIDACAAGQLPAEIVAVISDRPDAYGLERAEAA---------GIPTFVLDHKDFPS----- 64 (200)
T ss_pred ceEEEEEcCCChh---HHHHHHHHHcCCCCcEEEEEEecCccchHHHHHHHc---------CCCEEEECccccCc-----
Confidence 6788888877443 346667776654 77877644321 2233333 67766654221100
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcc-hHHHHHHHcCCceEEEechh
Q 012744 78 MRKLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAG-WAIEVAEKMKLRRAVVVITS 138 (457)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~-~~~~~A~~lgiP~v~~~~~~ 138 (457)
.......+.+.++. .+||++|+-.+.. ....+-+...-.++-++++.
T Consensus 65 --------~~~~~~~~~~~l~~------~~~D~iv~~~~~~ii~~~~l~~~~~~~iNiHpsl 112 (200)
T PRK05647 65 --------REAFDAALVEALDA------YQPDLVVLAGFMRILGPTFVSAYEGRIINIHPSL 112 (200)
T ss_pred --------hhHhHHHHHHHHHH------hCcCEEEhHHhhhhCCHHHHhhccCCEEEEeCcc
Confidence 01111223344444 7899998865533 44444455555567766553
No 185
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=82.81 E-value=9.3 Score=31.08 Aligned_cols=139 Identities=12% Similarity=0.153 Sum_probs=75.4
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHhhcCCcEEEEEcCCCCCCCcCCCchhHHHHhcCCceeecCCCchhhccCCCcccee
Q 012744 271 VIYVAFGSHTVLEQNQFQELALGLEICNRSFLWVVRPDITNDANDAYPEGFRERVAARGQMISWSPQQKVLTHPSISCFM 350 (457)
Q Consensus 271 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I 350 (457)
.|-|-.||.+ +....+++.+.|+..+..+-+-+.+. ...|+.+. .++...+- ..+++ ||
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~sa------HR~p~~l~----------~~~~~~~~-~~~~v--iI 60 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASA------HRTPERLL----------EFVKEYEA-RGADV--II 60 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--T------TTSHHHHH----------HHHHHTTT-TTESE--EE
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEec------cCCHHHHH----------HHHHHhcc-CCCEE--EE
Confidence 4666677644 56778888888888887765555432 33444422 22211111 23455 88
Q ss_pred eccCcc----hhhhhhhcCCceeccccccchhhhHH---hhhhh-hceeEEeeccCCCccCHHHHHHHHHHHhCCHHHHH
Q 012744 351 SHCGWN----STTEGVSNGVPFLCWPFFADQFMNTT---YICDV-WKVGLRLERNQSGIIGREEIKNKVDQVLGDQNFKA 422 (457)
Q Consensus 351 ~HgG~~----s~~eal~~GvP~l~~P~~~DQ~~na~---~v~~~-lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 422 (457)
.=.|.. ++..++. -+|+|.+|....+..... -+.+- -|+++..-.- ++..++.-++-.|-.+ .|+++++
T Consensus 61 a~AG~~a~Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i-~~~~nAA~~A~~ILa~-~d~~l~~ 137 (150)
T PF00731_consen 61 AVAGMSAALPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGI-NNGFNAALLAARILAL-KDPELRE 137 (150)
T ss_dssp EEEESS--HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SS-THHHHHHHHHHHHHHT-T-HHHHH
T ss_pred EECCCcccchhhheecc-CCCEEEeecCcccccCcccHHHHHhccCCCCceEEEc-cCchHHHHHHHHHHhc-CCHHHHH
Confidence 887754 4444444 789999998766432111 11120 1555433210 1335566666666444 4789999
Q ss_pred HHHHHHHHHHh
Q 012744 423 RALKLKEKALS 433 (457)
Q Consensus 423 ~a~~l~~~~~~ 433 (457)
+.+..+++.++
T Consensus 138 kl~~~~~~~~~ 148 (150)
T PF00731_consen 138 KLRAYREKMKE 148 (150)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999988875
No 186
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=82.81 E-value=46 Score=33.19 Aligned_cols=106 Identities=11% Similarity=0.072 Sum_probs=74.3
Q ss_pred eeecCCCchh---hccCCCccceee---ccCcchhh-hhhhcCC----ceeccccccchhhhHHhhhhhhceeEEeeccC
Q 012744 330 QMISWSPQQK---VLTHPSISCFMS---HCGWNSTT-EGVSNGV----PFLCWPFFADQFMNTTYICDVWKVGLRLERNQ 398 (457)
Q Consensus 330 ~~~~~~pq~~---ll~~~~~~~~I~---HgG~~s~~-eal~~Gv----P~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~ 398 (457)
++.+.+|+.+ +++.+|+ ++. .-|+|-|. |.++++. |+|.--+.+ |. ++ +.-++.++
T Consensus 365 ~~~~~v~~~el~alYr~ADV--~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-----aa--~~-l~~AllVN--- 431 (487)
T TIGR02398 365 FFTRSLPYEEVSAWFAMADV--MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-----AA--VE-LKGALLTN--- 431 (487)
T ss_pred EEcCCCCHHHHHHHHHhCCE--EEECccccccCcchhhHHhhhcCCCCCEEEecccc-----ch--hh-cCCCEEEC---
Confidence 4457788664 7778888 554 45888554 9999877 555443332 11 33 45577774
Q ss_pred CCccCHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcC
Q 012744 399 SGIIGREEIKNKVDQVLGDQ--NFKARALKLKEKALSSVREGGSSNKAIQNFVQSIKQW 455 (457)
Q Consensus 399 ~~~~~~~~l~~~i~~~l~~~--~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 455 (457)
..+.++++++|.++|+.+ +-+++.+++.+.+++ -+...=.+.|+.+|.+.
T Consensus 432 --P~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~-----~d~~~W~~~fl~~l~~~ 483 (487)
T TIGR02398 432 --PYDPVRMDETIYVALAMPKAEQQARMREMFDAVNY-----YDVQRWADEFLAAVSPQ 483 (487)
T ss_pred --CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhhhc
Confidence 479999999999999876 566777777777765 46667788898888754
No 187
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=82.51 E-value=13 Score=28.78 Aligned_cols=94 Identities=19% Similarity=0.141 Sum_probs=57.4
Q ss_pred EEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHHHHHHH
Q 012744 8 VIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLLEKRLQ 87 (457)
Q Consensus 8 ~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (457)
|++.... +-.-+..+|+.|.+.|++|. +++...+.+.+. |+....+..........
T Consensus 4 lisv~~~-dk~~~~~~a~~l~~~G~~i~--aT~gTa~~L~~~---------gi~~~~v~~~~~~~~~~------------ 59 (116)
T cd01423 4 LISIGSY-SKPELLPTAQKLSKLGYKLY--ATEGTADFLLEN---------GIPVTPVAWPSEEPQND------------ 59 (116)
T ss_pred EEecCcc-cchhHHHHHHHHHHCCCEEE--EccHHHHHHHHc---------CCCceEeeeccCCCCCC------------
Confidence 4444444 55568899999999999884 455666677665 55544432110000000
Q ss_pred hcchHHHHHHHHHhcCCCCCeeEEEecCC---------cchHHHHHHHcCCceEE
Q 012744 88 VMPGKLEGLIEEIHGREGEKTACLIADGA---------AGWAIEVAEKMKLRRAV 133 (457)
Q Consensus 88 ~~~~~~~~~~~~l~~~~~~~~D~vv~D~~---------~~~~~~~A~~lgiP~v~ 133 (457)
.+.+.++++. .++|+||.-+. .+.....|-.+|||++.
T Consensus 60 --~~~i~~~i~~------~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 60 --KPSLRELLAE------GKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred --chhHHHHHHc------CCceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 1334455555 88999998543 23456678899999974
No 188
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=82.45 E-value=17 Score=26.58 Aligned_cols=78 Identities=18% Similarity=0.164 Sum_probs=47.0
Q ss_pred HHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEe-cCCCCCCCCCcchHHHHHHHHHHhcchHHHHHHH
Q 012744 20 LLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVS-IPDGMEPWDDRSDMRKLLEKRLQVMPGKLEGLIE 98 (457)
Q Consensus 20 ~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (457)
++.+++.|.+.|+++. + ++...+.+++. |+.... ++... .+ . + .+++
T Consensus 2 ~~~~~~~l~~lG~~i~-A-T~gTa~~L~~~---------Gi~~~~~~~ki~-~~-~----------------~---~i~~ 49 (90)
T smart00851 2 LVELAKRLAELGFELV-A-TGGTAKFLREA---------GLPVKTLHPKVH-GG-I----------------L---AILD 49 (90)
T ss_pred HHHHHHHHHHCCCEEE-E-ccHHHHHHHHC---------CCcceeccCCCC-CC-C----------------H---HHHH
Confidence 4689999999999984 4 44556677665 565421 11100 00 0 1 2444
Q ss_pred HHhcCCCCCeeEEEecCCc---------chHHHHHHHcCCceE
Q 012744 99 EIHGREGEKTACLIADGAA---------GWAIEVAEKMKLRRA 132 (457)
Q Consensus 99 ~l~~~~~~~~D~vv~D~~~---------~~~~~~A~~lgiP~v 132 (457)
.++. .++|+||..... ..-..+|...+||++
T Consensus 50 ~i~~---g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 50 LIKN---GEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred HhcC---CCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 4444 899999985431 134567888899986
No 189
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=82.24 E-value=2.4 Score=36.20 Aligned_cols=45 Identities=9% Similarity=-0.032 Sum_probs=34.7
Q ss_pred CCCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHH
Q 012744 2 SSPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRV 46 (457)
Q Consensus 2 ~~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~ 46 (457)
+.+||++--.|+.|=+.-...+++.|.++||+|.++.++.....+
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~~~ 48 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQTTD 48 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHHHh
Confidence 356777766666555554799999999999999999987766544
No 190
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=82.14 E-value=14 Score=31.20 Aligned_cols=108 Identities=13% Similarity=0.034 Sum_probs=56.3
Q ss_pred CEEEEEcCCCCcChHHHHHHHHHHHhCCCe--EEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHH
Q 012744 4 PHVVVIPNPEQGHVIPLLELSQNLAKHGLR--ITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKL 81 (457)
Q Consensus 4 ~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~--Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (457)
|||+|+..++. ..+..+.++|.+++|+ +..+.+............. .++....+....
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~~~-----~~~~~~~~~~~~------------ 60 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITNPDKPRGRSRAIK-----NGIPAQVADEKN------------ 60 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHHHH-----TTHHEEEHHGGG------------
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEecccccccccccccc-----CCCCEEeccccC------------
Confidence 68888866655 5677788899999997 4444443332221111000 133322221110
Q ss_pred HHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcc-hHHHHHHHcCCceEEEechh
Q 012744 82 LEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAG-WAIEVAEKMKLRRAVVVITS 138 (457)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~-~~~~~A~~lgiP~v~~~~~~ 138 (457)
+ .-.......+.+.++. .+||++|+-.+.. ....+-+.....++.++++.
T Consensus 61 ~-~~~~~~~~~~~~~l~~------~~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHpsl 111 (181)
T PF00551_consen 61 F-QPRSENDEELLELLES------LNPDLIVVAGYGRILPKEFLSIPPYGIINIHPSL 111 (181)
T ss_dssp S-SSHHHHHHHHHHHHHH------TT-SEEEESS-SS---HHHHHHSTTSEEEEESSS
T ss_pred C-CchHhhhhHHHHHHHh------hccceeehhhhHHHhhhhhhhcccccEEEEeecC
Confidence 0 0001111233344444 8999998876543 55566677788889988763
No 191
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=81.92 E-value=12 Score=32.71 Aligned_cols=44 Identities=11% Similarity=0.080 Sum_probs=38.0
Q ss_pred CCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHH
Q 012744 3 SPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRV 46 (457)
Q Consensus 3 ~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~ 46 (457)
+.++++.+.++-.|-....-++..|..+|++|+++...-..+.+
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~ 131 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKI 131 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHH
Confidence 46899999999999999999999999999999999865544433
No 192
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=81.61 E-value=7.8 Score=35.34 Aligned_cols=114 Identities=11% Similarity=0.107 Sum_probs=66.2
Q ss_pred CEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhh------hcCCCCCCCCeEEEecCCCCCCCCCcch
Q 012744 4 PHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLES------LEGKNYIGEQIHLVSIPDGMEPWDDRSD 77 (457)
Q Consensus 4 ~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (457)
.+|.+.-.|+-|--.-.-.|++.|.++||+|-++.-.+...+.... ..+.....+|+-+.++|..-..
T Consensus 52 ~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~l------ 125 (323)
T COG1703 52 HVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTL------ 125 (323)
T ss_pred cEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccc------
Confidence 4677888899999999999999999999999999744432221111 0111122345555555522111
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcc--hHHHHHHHcCCceEEEe
Q 012744 78 MRKLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAG--WAIEVAEKMKLRRAVVV 135 (457)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~--~~~~~A~~lgiP~v~~~ 135 (457)
.-......+.+..+.. ..+|+||++---. .=..+++...+=.+...
T Consensus 126 ---------GGlS~at~~~i~~ldA---aG~DvIIVETVGvGQsev~I~~~aDt~~~v~~ 173 (323)
T COG1703 126 ---------GGLSRATREAIKLLDA---AGYDVIIVETVGVGQSEVDIANMADTFLVVMI 173 (323)
T ss_pred ---------hhhhHHHHHHHHHHHh---cCCCEEEEEecCCCcchhHHhhhcceEEEEec
Confidence 1111233344444444 8999999994222 33455665555555443
No 193
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=80.73 E-value=26 Score=31.36 Aligned_cols=99 Identities=10% Similarity=0.128 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHHHHHHHhcchHHHHH
Q 012744 17 VIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLLEKRLQVMPGKLEGL 96 (457)
Q Consensus 17 ~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (457)
.--+.+|+++|.+. |+|+++.+........... +....+++..+.++. ..-...+.......
T Consensus 13 a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~g~ai----t~~~pl~~~~~~~~~--~~v~GTPaDcV~~g----------- 74 (250)
T PRK00346 13 APGIRALAEALREL-ADVTVVAPDRERSGASHSL----TLTRPLRVEKVDNGF--YAVDGTPTDCVHLA----------- 74 (250)
T ss_pred ChhHHHHHHHHHhC-CCEEEEeCCCCCcCCcccc----cCCCCeEEEEecCCe--EEECCcHHHHHHHH-----------
Confidence 33478899999888 7999998876544332211 111234544442110 00111122211111
Q ss_pred HHHHhcCCCCCeeEEEec----------CCcc---hHHHHHHHcCCceEEEec
Q 012744 97 IEEIHGREGEKTACLIAD----------GAAG---WAIEVAEKMKLRRAVVVI 136 (457)
Q Consensus 97 ~~~l~~~~~~~~D~vv~D----------~~~~---~~~~~A~~lgiP~v~~~~ 136 (457)
+..+.. .+||+||+- .+++ .|+.-|..+|||.+.++-
T Consensus 75 l~~l~~---~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 124 (250)
T PRK00346 75 LNGLLD---PKPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSL 124 (250)
T ss_pred HHhhcc---CCCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEec
Confidence 122222 478888863 3333 445556778999999874
No 194
>PRK12342 hypothetical protein; Provisional
Probab=80.66 E-value=16 Score=32.78 Aligned_cols=32 Identities=16% Similarity=0.107 Sum_probs=25.5
Q ss_pred CCeeEEEecCCcc------hHHHHHHHcCCceEEEech
Q 012744 106 EKTACLIADGAAG------WAIEVAEKMKLRRAVVVIT 137 (457)
Q Consensus 106 ~~~D~vv~D~~~~------~~~~~A~~lgiP~v~~~~~ 137 (457)
.+||+|++-..+. .+..+|+.+|+|++.....
T Consensus 108 ~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 108 IGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred hCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 5699999854443 5899999999999997644
No 195
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=80.53 E-value=20 Score=27.30 Aligned_cols=84 Identities=15% Similarity=0.109 Sum_probs=55.9
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHHHHHHHhcchHHH
Q 012744 15 GHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLLEKRLQVMPGKLE 94 (457)
Q Consensus 15 GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (457)
++-.-+.++++.|.+.|+++. +++...+.+... |+....+.... ...+.+.
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l~--aT~gT~~~l~~~---------gi~~~~v~~~~------------------~~~~~i~ 60 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKLV--ATEGTAKYLQEA---------GIPVEVVNKVS------------------EGRPNIV 60 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEEE--EchHHHHHHHHc---------CCeEEEEeecC------------------CCchhHH
Confidence 355678899999999999984 455666677765 66654442110 0113344
Q ss_pred HHHHHHhcCCCCCeeEEEecCC-------cchHHHHHHHcCCceEE
Q 012744 95 GLIEEIHGREGEKTACLIADGA-------AGWAIEVAEKMKLRRAV 133 (457)
Q Consensus 95 ~~~~~l~~~~~~~~D~vv~D~~-------~~~~~~~A~~lgiP~v~ 133 (457)
++++. .++|+||.-+. .+.....|-.+|||++.
T Consensus 61 ~~i~~------~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 61 DLIKN------GEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred HHHHc------CCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 45544 89999998532 23567778899999996
No 196
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=80.29 E-value=4 Score=29.11 Aligned_cols=36 Identities=25% Similarity=0.203 Sum_probs=31.7
Q ss_pred CEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeC
Q 012744 4 PHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNS 39 (457)
Q Consensus 4 ~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~ 39 (457)
.-++++..|...|...+..+|+.|+++|+.|...-.
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D~ 51 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYDH 51 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 457888899999999999999999999999987643
No 197
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=80.24 E-value=2.9 Score=34.99 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=16.8
Q ss_pred ChHHHHHHHHHHHh-CC--CeEEEE
Q 012744 16 HVIPLLELSQNLAK-HG--LRITFV 37 (457)
Q Consensus 16 H~~p~~~la~~L~~-~G--h~Vt~~ 37 (457)
|.....+|+++|.+ +| .+|.++
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~v~ 25 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVEVV 25 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 78889999999988 44 555544
No 198
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=80.14 E-value=8.2 Score=34.34 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=24.0
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEeCCcchhHH
Q 012744 16 HVIPLLELSQNLAKHGLRITFVNSEYNHKRV 46 (457)
Q Consensus 16 H~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~ 46 (457)
|.--+.+|+++|. .+++|+++.+...+...
T Consensus 12 ~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~ 41 (252)
T COG0496 12 HAPGIRALARALR-EGADVTVVAPDREQSGA 41 (252)
T ss_pred CCHHHHHHHHHHh-hCCCEEEEccCCCCccc
Confidence 4445788999998 99999999998876544
No 199
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=80.07 E-value=1.8 Score=36.82 Aligned_cols=41 Identities=17% Similarity=0.391 Sum_probs=29.3
Q ss_pred CCCCEEEEEcCCCCcChHH------------HHHHHHHHHhCCCeEEEEeCCc
Q 012744 1 MSSPHVVVIPNPEQGHVIP------------LLELSQNLAKHGLRITFVNSEY 41 (457)
Q Consensus 1 m~~~~vl~~~~~~~GH~~p------------~~~la~~L~~~Gh~Vt~~~~~~ 41 (457)
++.+||++...|+.-++.| -..||+++..+||+|+++..+.
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 1 LKGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp -TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CCCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 3567788887777666664 4689999999999999999885
No 200
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=79.99 E-value=18 Score=35.54 Aligned_cols=27 Identities=15% Similarity=0.144 Sum_probs=23.1
Q ss_pred CCeeEEEecCCcchHHHHHHHcCCceEEEe
Q 012744 106 EKTACLIADGAAGWAIEVAEKMKLRRAVVV 135 (457)
Q Consensus 106 ~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~ 135 (457)
.+||++|... ....+|+++|+|++.+.
T Consensus 376 ~~pDliiG~s---~~~~~a~~~gip~v~~~ 402 (435)
T cd01974 376 EPVDLLIGNT---YGKYIARDTDIPLVRFG 402 (435)
T ss_pred cCCCEEEECc---cHHHHHHHhCCCEEEee
Confidence 7899999985 46888999999998763
No 201
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=79.92 E-value=4.8 Score=36.61 Aligned_cols=41 Identities=10% Similarity=0.059 Sum_probs=33.3
Q ss_pred eeecCCCchhhccCCCccceeeccCcchhhhhhhcCCceecccc
Q 012744 330 QMISWSPQQKVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPF 373 (457)
Q Consensus 330 ~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~ 373 (457)
.+.+-++-.+|+.+++. +||-.+. +-.||+.+|+|++++.-
T Consensus 186 ~~~~~~~~~~Ll~~s~~--VvtinSt-vGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 186 IIDDDVNLYELLEQSDA--VVTINST-VGLEALLHGKPVIVFGR 226 (269)
T ss_pred EECCCCCHHHHHHhCCE--EEEECCH-HHHHHHHcCCceEEecC
Confidence 34466777899999998 8887654 88999999999998754
No 202
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=79.80 E-value=14 Score=33.21 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=31.4
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcch
Q 012744 6 VVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNH 43 (457)
Q Consensus 6 vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~ 43 (457)
++|..-|+.|--.-...+|..++++|++|.++.....+
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~ 40 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAH 40 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcc
Confidence 34455667799999999999999999999999876643
No 203
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=79.45 E-value=6.8 Score=41.47 Aligned_cols=108 Identities=11% Similarity=0.086 Sum_probs=66.7
Q ss_pred eecCCCch---hhccCCCccceeec---cCc-chhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCCCccC
Q 012744 331 MISWSPQQ---KVLTHPSISCFMSH---CGW-NSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIG 403 (457)
Q Consensus 331 ~~~~~pq~---~ll~~~~~~~~I~H---gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~ 403 (457)
+.+++++. ++++.+++ ++.- -|+ .++.|++++|+|-...|...+----+ .+ +.-|+.+++ .+
T Consensus 346 ~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~---~~-l~~~llv~P-----~d 414 (726)
T PRK14501 346 FYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAA---AE-LAEALLVNP-----ND 414 (726)
T ss_pred EeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchh---HH-hCcCeEECC-----CC
Confidence 44677876 48888888 7764 355 47889999977521112111111111 12 233666643 68
Q ss_pred HHHHHHHHHHHhCCH--HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhc
Q 012744 404 REEIKNKVDQVLGDQ--NFKARALKLKEKALSSVREGGSSNKAIQNFVQSIKQ 454 (457)
Q Consensus 404 ~~~l~~~i~~~l~~~--~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 454 (457)
.++++++|.++++.+ +.+++.+++.+.+.+ -+...-++.++..+.+
T Consensus 415 ~~~la~ai~~~l~~~~~e~~~r~~~~~~~v~~-----~~~~~w~~~~l~~l~~ 462 (726)
T PRK14501 415 IEGIAAAIKRALEMPEEEQRERMQAMQERLRR-----YDVHKWASDFLDELRE 462 (726)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHH
Confidence 999999999999854 455555555555543 5666777777777664
No 204
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=78.65 E-value=22 Score=31.18 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=26.3
Q ss_pred EEEEcCC-CCcChHHHHHHHHHHHhCCCeEEEEe
Q 012744 6 VVVIPNP-EQGHVIPLLELSQNLAKHGLRITFVN 38 (457)
Q Consensus 6 vl~~~~~-~~GH~~p~~~la~~L~~~Gh~Vt~~~ 38 (457)
+++.+.. ..|--.-...|++.|+++|++|.++-
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~K 35 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYK 35 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEe
Confidence 4444444 34889999999999999999998875
No 205
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=78.61 E-value=17 Score=31.66 Aligned_cols=37 Identities=14% Similarity=0.372 Sum_probs=30.5
Q ss_pred EEEEEcCC--CCcChHHHHHHHHHHHhCCCeEEEEeCCc
Q 012744 5 HVVVIPNP--EQGHVIPLLELSQNLAKHGLRITFVNSEY 41 (457)
Q Consensus 5 ~vl~~~~~--~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~ 41 (457)
++++++.| +-|-......|+-+|+++|+.|.++-..-
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~Di 41 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDI 41 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCc
Confidence 56666655 55999999999999999999999997654
No 206
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=78.52 E-value=3.8 Score=39.31 Aligned_cols=111 Identities=11% Similarity=0.216 Sum_probs=65.9
Q ss_pred cCCceee-cCCCchhhccCCCccceeeccCcchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeecc--CCCcc
Q 012744 326 AARGQMI-SWSPQQKVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERN--QSGII 402 (457)
Q Consensus 326 ~~nv~~~-~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~--~~~~~ 402 (457)
.+++..+ +..+-.++|..+++ +||--. +.+.|.+..++|++....-.|+.... + |.-...... +..--
T Consensus 251 ~~~i~~~~~~~~~~~ll~~aDi--LITDyS-Si~fD~~~l~KPiify~~D~~~Y~~~-----r-g~~~~~~~~~pg~~~~ 321 (369)
T PF04464_consen 251 NSNIIFVSDNEDIYDLLAAADI--LITDYS-SIIFDFLLLNKPIIFYQPDLEEYEKE-----R-GFYFDYEEDLPGPIVY 321 (369)
T ss_dssp TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTT-----S-SBSS-TTTSSSS-EES
T ss_pred CCcEEECCCCCCHHHHHHhcCE--EEEech-hHHHHHHHhCCCEEEEeccHHHHhhc-----c-CCCCchHhhCCCceeC
Confidence 3566554 44567789999999 999874 48899999999999888777766332 1 333222110 01124
Q ss_pred CHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHhhhhcCCChHHHHH
Q 012744 403 GREEIKNKVDQVLGDQ-NFKARALKLKEKALSSVREGGSSNKAIQ 446 (457)
Q Consensus 403 ~~~~l~~~i~~~l~~~-~~~~~a~~l~~~~~~~~~~~g~~~~~~~ 446 (457)
+.++|.++|..+++++ .++++.++..+++-. ..+|.++.+-++
T Consensus 322 ~~~eL~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~Dg~s~eri~~ 365 (369)
T PF04464_consen 322 NFEELIEAIENIIENPDEYKEKREKFRDKFFK-YNDGNSSERIVN 365 (369)
T ss_dssp SHHHHHHHHTTHHHHHHHTHHHHHHHHHHHST-T--S-HHHHHHH
T ss_pred CHHHHHHHHHhhhhCCHHHHHHHHHHHHHhCC-CCCchHHHHHHH
Confidence 7899999999998776 456777777888765 234444444333
No 207
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=78.12 E-value=25 Score=30.41 Aligned_cols=143 Identities=9% Similarity=0.089 Sum_probs=78.4
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHhhcCCcEEEEEcCCCCCCCcCCCchhHHHHhc-CCceeecCCCchhhccCCCcc
Q 012744 269 NSVIYVAFGSHTVLEQNQFQELALGLEICNRSFLWVVRPDITNDANDAYPEGFRERVA-ARGQMISWSPQQKVLTHPSIS 347 (457)
Q Consensus 269 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~nv~~~~~~pq~~ll~~~~~~ 347 (457)
+.++.|+.|.++ ...++.|...+..+.++.. . ..+.+.+..+ +.+.......+..-+..+++
T Consensus 11 k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs~-~--------~~~~l~~l~~~~~i~~~~~~~~~~~l~~adl- 73 (202)
T PRK06718 11 KRVVIVGGGKVA-------GRRAITLLKYGAHIVVISP-E--------LTENLVKLVEEGKIRWKQKEFEPSDIVDAFL- 73 (202)
T ss_pred CEEEEECCCHHH-------HHHHHHHHHCCCeEEEEcC-C--------CCHHHHHHHhCCCEEEEecCCChhhcCCceE-
Confidence 558888777543 3445556556776655532 2 2223322222 33444444444556677777
Q ss_pred ceeeccCcchhhhhhh----cCCceeccccccchh-----hhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCCH
Q 012744 348 CFMSHCGWNSTTEGVS----NGVPFLCWPFFADQF-----MNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGDQ 418 (457)
Q Consensus 348 ~~I~HgG~~s~~eal~----~GvP~l~~P~~~DQ~-----~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~~ 418 (457)
+|.--+.-.+.+.++ .|+++-+ .|.+ ..-..+.+. ++-+.+...+.+..-+..|++.|..++...
T Consensus 74 -ViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~~~g-~l~iaIsT~G~sP~la~~lr~~ie~~~~~~ 147 (202)
T PRK06718 74 -VIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSALHRG-KLTISVSTDGASPKLAKKIRDELEALYDES 147 (202)
T ss_pred -EEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEEEcC-CeEEEEECCCCChHHHHHHHHHHHHHcchh
Confidence 888777666665554 4555433 2332 222333432 455555543333445577888888887432
Q ss_pred --HHHHHHHHHHHHHHhh
Q 012744 419 --NFKARALKLKEKALSS 434 (457)
Q Consensus 419 --~~~~~a~~l~~~~~~~ 434 (457)
.+-+.+.++++.+++.
T Consensus 148 ~~~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 148 YESYIDFLYECRQKIKEL 165 (202)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 5667777777777653
No 208
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=77.79 E-value=8.2 Score=32.88 Aligned_cols=94 Identities=17% Similarity=0.254 Sum_probs=48.4
Q ss_pred CCCCcChHHHHHHHHHHHhC--CCeEEEEeCCcchhH-HHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHHHHHHH
Q 012744 11 NPEQGHVIPLLELSQNLAKH--GLRITFVNSEYNHKR-VLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLLEKRLQ 87 (457)
Q Consensus 11 ~~~~GH~~p~~~la~~L~~~--Gh~Vt~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (457)
..+-|-+....+|+++|.++ |++|.+-++...... ..+... +.+....+|-+.
T Consensus 28 a~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~------~~v~~~~~P~D~------------------ 83 (186)
T PF04413_consen 28 AASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLP------DRVDVQYLPLDF------------------ 83 (186)
T ss_dssp -SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-G------GG-SEEE---SS------------------
T ss_pred ECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCC------CCeEEEEeCccC------------------
Confidence 44569999999999999987 899988887555443 332210 133333344221
Q ss_pred hcchHHHHHHHHHhcCCCCCeeEEEecCCcchH--HHHHHHcCCceEEEec
Q 012744 88 VMPGKLEGLIEEIHGREGEKTACLIADGAAGWA--IEVAEKMKLRRAVVVI 136 (457)
Q Consensus 88 ~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~--~~~A~~lgiP~v~~~~ 136 (457)
...++.+++. .+||++|.-....|. ...|++.|||.+.+..
T Consensus 84 --~~~~~rfl~~------~~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 84 --PWAVRRFLDH------WRPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp --HHHHHHHHHH------H--SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred --HHHHHHHHHH------hCCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 1245677777 789987776666644 5567788999999754
No 209
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=77.51 E-value=9 Score=29.70 Aligned_cols=42 Identities=24% Similarity=0.349 Sum_probs=35.6
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHH
Q 012744 5 HVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRV 46 (457)
Q Consensus 5 ~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~ 46 (457)
|+++.+.+...|-.-+.-|+..|.++||+|.++......+.+
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l 43 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEEL 43 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHH
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHH
Confidence 788999999999999999999999999999999765544433
No 210
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=77.18 E-value=48 Score=28.75 Aligned_cols=145 Identities=10% Similarity=0.087 Sum_probs=77.0
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHhhcCCcEEEEEcCCCCCCCcCCCchhHHHHh-cCCceeecCCCchhhccCCCcc
Q 012744 269 NSVIYVAFGSHTVLEQNQFQELALGLEICNRSFLWVVRPDITNDANDAYPEGFRERV-AARGQMISWSPQQKVLTHPSIS 347 (457)
Q Consensus 269 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~nv~~~~~~pq~~ll~~~~~~ 347 (457)
+.++.|..|..+ ..-+..|.+.+..+.++.... .+.+.+.. .+++....--.+...+..+++
T Consensus 10 k~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp~~---------~~~l~~l~~~~~i~~~~~~~~~~dl~~~~l- 72 (205)
T TIGR01470 10 RAVLVVGGGDVA-------LRKARLLLKAGAQLRVIAEEL---------ESELTLLAEQGGITWLARCFDADILEGAFL- 72 (205)
T ss_pred CeEEEECcCHHH-------HHHHHHHHHCCCEEEEEcCCC---------CHHHHHHHHcCCEEEEeCCCCHHHhCCcEE-
Confidence 458888777533 233445555777766554321 12222211 245554422223445666777
Q ss_pred ceeeccCcchhhh-----hhhcCCceec--cccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCCH--
Q 012744 348 CFMSHCGWNSTTE-----GVSNGVPFLC--WPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGDQ-- 418 (457)
Q Consensus 348 ~~I~HgG~~s~~e-----al~~GvP~l~--~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~~-- 418 (457)
+|..-|...+.+ |-..|+|+-+ -|-..| +..-..+.+. ++-+.+...+.+..-+..|++.|.+++.+.
T Consensus 73 -Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~~~g-~l~iaisT~G~sP~la~~lr~~ie~~l~~~~~ 149 (205)
T TIGR01470 73 -VIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIVDRS-PVVVAISSGGAAPVLARLLRERIETLLPPSLG 149 (205)
T ss_pred -EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEEEcC-CEEEEEECCCCCcHHHHHHHHHHHHhcchhHH
Confidence 888777664443 3456888833 333222 2222333432 455555543334455578899998888532
Q ss_pred HHHHHHHHHHHHHHh
Q 012744 419 NFKARALKLKEKALS 433 (457)
Q Consensus 419 ~~~~~a~~l~~~~~~ 433 (457)
.+.+...++++.+++
T Consensus 150 ~~~~~~~~~R~~~k~ 164 (205)
T TIGR01470 150 DLATLAATWRDAVKK 164 (205)
T ss_pred HHHHHHHHHHHHHHh
Confidence 455666666666654
No 211
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=77.06 E-value=24 Score=32.83 Aligned_cols=43 Identities=12% Similarity=0.267 Sum_probs=37.2
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHh
Q 012744 6 VVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLE 48 (457)
Q Consensus 6 vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~ 48 (457)
++|+-.-+.|--...-.||..|.+.|+.|.++....|+....+
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiE 184 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIE 184 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHH
Confidence 4667788999999999999999999999999999888765443
No 212
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=76.78 E-value=68 Score=30.27 Aligned_cols=82 Identities=18% Similarity=0.210 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHH-hh-cCCcEEEEEcCCCCCCCcCCCchhHHHH--hcCCceeecCCCch---hhccCCCccceeeccC-
Q 012744 283 EQNQFQELALGL-EI-CNRSFLWVVRPDITNDANDAYPEGFRER--VAARGQMISWSPQQ---KVLTHPSISCFMSHCG- 354 (457)
Q Consensus 283 ~~~~~~~~~~a~-~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~nv~~~~~~pq~---~ll~~~~~~~~I~HgG- 354 (457)
..+++.+++.-+ .+ .+.+|++...+.+ ...-+..+|+ .-++|.+.+-+|++ ++|.+.++ |++-.=
T Consensus 209 GiDll~~iIp~vc~~~p~vrfii~GDGPk-----~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~I--FlntSlT 281 (426)
T KOG1111|consen 209 GIDLLLEIIPSVCDKHPEVRFIIIGDGPK-----RIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDI--FLNTSLT 281 (426)
T ss_pred chHHHHHHHHHHHhcCCCeeEEEecCCcc-----cchHHHHHHHhhccCceEEecccchHHHHHHHhcCcE--EeccHHH
Confidence 446666655444 33 3567776665441 1111223333 35888899999986 58888888 876542
Q ss_pred ---cchhhhhhhcCCceecc
Q 012744 355 ---WNSTTEGVSNGVPFLCW 371 (457)
Q Consensus 355 ---~~s~~eal~~GvP~l~~ 371 (457)
.-++.||..+|.|++..
T Consensus 282 Eafc~~ivEAaScGL~VVsT 301 (426)
T KOG1111|consen 282 EAFCMVIVEAASCGLPVVST 301 (426)
T ss_pred HHHHHHHHHHHhCCCEEEEe
Confidence 23678999999999854
No 213
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=76.24 E-value=12 Score=32.02 Aligned_cols=115 Identities=22% Similarity=0.185 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHhCCCeEEEEeCCcchhHH-HhhhcCCCCCCCCeEEE--ecCCCCCCCCCcchHHHHHHHHHHhcchHH
Q 012744 17 VIPLLELSQNLAKHGLRITFVNSEYNHKRV-LESLEGKNYIGEQIHLV--SIPDGMEPWDDRSDMRKLLEKRLQVMPGKL 93 (457)
Q Consensus 17 ~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (457)
+.-...+...+.++|-+|.|+++......+ ...... .+..++ .+-.|.-.. .......+..+...-...+
T Consensus 42 L~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~~-----~~~~~i~~rw~~G~LTN--~~~~~~~~~~~~~~~~~~~ 114 (193)
T cd01425 42 LRLALNFIANIAAKGGKILFVGTKPQAQRAVKKFAER-----TGSFYVNGRWLGGTLTN--WKTIRKSIKRLKKLEKEKL 114 (193)
T ss_pred HHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHH-----cCCeeecCeecCCcCCC--HHHHHHHHHHHHHHHHHHH
Confidence 344566667788889999999987644333 222111 022221 111221111 1111111211111101223
Q ss_pred HHHHHHHhcCCCCCeeEEEe-cCCcc-hHHHHHHHcCCceEEEechhh
Q 012744 94 EGLIEEIHGREGEKTACLIA-DGAAG-WAIEVAEKMKLRRAVVVITSA 139 (457)
Q Consensus 94 ~~~~~~l~~~~~~~~D~vv~-D~~~~-~~~~~A~~lgiP~v~~~~~~~ 139 (457)
+..+..++... ..||+||. |+... .+..=|.++|||.+.+..+..
T Consensus 115 ~k~~~g~~~~~-~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn~ 161 (193)
T cd01425 115 EKNLGGIKDMF-RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTNC 161 (193)
T ss_pred HHhcccccccc-cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCCC
Confidence 33333333322 68998655 44333 666778999999999876653
No 214
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=76.02 E-value=50 Score=28.37 Aligned_cols=39 Identities=13% Similarity=0.321 Sum_probs=29.1
Q ss_pred CCEEEEEcCC--CCcChHHHHHHHHHHHhCCCeEEEEeCCc
Q 012744 3 SPHVVVIPNP--EQGHVIPLLELSQNLAKHGLRITFVNSEY 41 (457)
Q Consensus 3 ~~~vl~~~~~--~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~ 41 (457)
++|++.++.+ +.|=-.-...||..|+++|++|.++-...
T Consensus 16 ~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~ 56 (204)
T TIGR01007 16 EIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDM 56 (204)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 4565555433 44777789999999999999999986543
No 215
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=74.98 E-value=46 Score=27.46 Aligned_cols=97 Identities=14% Similarity=0.088 Sum_probs=57.0
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCeEEE---EeCC-cc--hhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchH
Q 012744 5 HVVVIPNPEQGHVIPLLELSQNLAKHGLRITF---VNSE-YN--HKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDM 78 (457)
Q Consensus 5 ~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~---~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (457)
-|.+++.++.|=....+.+|-+.+.+|++|.+ +-.. .. ...+... +++.+.....+..... .+.
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l--------~~v~~~~~g~~~~~~~--~~~ 73 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERL--------PNIEIHRMGRGFFWTT--END 73 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhC--------CCcEEEECCCCCccCC--CCh
Confidence 46778888999999999999999999999999 4442 11 1222222 4788777665432221 111
Q ss_pred HHHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcc
Q 012744 79 RKLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAG 118 (457)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~ 118 (457)
....... ...++...+.+.. .++|+||-|....
T Consensus 74 ~~~~~~a----~~~~~~a~~~~~~---~~~dLlVLDEi~~ 106 (159)
T cd00561 74 EEDIAAA----AEGWAFAKEAIAS---GEYDLVILDEINY 106 (159)
T ss_pred HHHHHHH----HHHHHHHHHHHhc---CCCCEEEEechHh
Confidence 1111111 1222222233332 7899999997553
No 216
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=74.96 E-value=29 Score=27.68 Aligned_cols=59 Identities=7% Similarity=0.092 Sum_probs=44.3
Q ss_pred CCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecC
Q 012744 3 SPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIP 66 (457)
Q Consensus 3 ~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (457)
+.+|++-+.++-+|-.-..-++..|.++|++|+.+......+.+.+...+ .+.+.+.++
T Consensus 1 ~~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~-----~~adiVglS 59 (134)
T TIGR01501 1 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIE-----TKADAILVS 59 (134)
T ss_pred CCeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----cCCCEEEEe
Confidence 46899999999999999999999999999999999876654444332211 156666654
No 217
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=74.71 E-value=14 Score=36.26 Aligned_cols=37 Identities=19% Similarity=0.084 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEEEe
Q 012744 93 LEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAVVV 135 (457)
Q Consensus 93 ~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~ 135 (457)
..++.+.+++ .+||+||.+. ....+|+++|+|++.+.
T Consensus 360 ~~el~~~i~~---~~pdliig~~---~~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 360 LWDLESLAKE---EPVDLLIGNS---HGRYLARDLGIPLVRVG 396 (428)
T ss_pred HHHHHHHhhc---cCCCEEEECc---hhHHHHHhcCCCEEEec
Confidence 3444444444 7899999995 45788999999998753
No 218
>PRK09620 hypothetical protein; Provisional
Probab=74.43 E-value=5.4 Score=35.25 Aligned_cols=41 Identities=10% Similarity=0.221 Sum_probs=30.5
Q ss_pred CCCCEEEEEcCCCCcChHHH------------HHHHHHHHhCCCeEEEEeCCc
Q 012744 1 MSSPHVVVIPNPEQGHVIPL------------LELSQNLAKHGLRITFVNSEY 41 (457)
Q Consensus 1 m~~~~vl~~~~~~~GH~~p~------------~~la~~L~~~Gh~Vt~~~~~~ 41 (457)
|+.++|++...|+.=.+.|. ..||++|.++|++|+++..+.
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~ 53 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYF 53 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 56678888777755444432 578999999999999997643
No 219
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=74.38 E-value=29 Score=32.43 Aligned_cols=33 Identities=15% Similarity=0.208 Sum_probs=23.7
Q ss_pred CEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCc
Q 012744 4 PHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEY 41 (457)
Q Consensus 4 ~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~ 41 (457)
|||+|+..+.. .+...++|.++||+|..+.+..
T Consensus 1 mkIvf~Gs~~~-----a~~~L~~L~~~~~~i~~Vvt~p 33 (313)
T TIGR00460 1 LRIVFFGTPTF-----SLPVLEELREDNFEVVGVVTQP 33 (313)
T ss_pred CEEEEECCCHH-----HHHHHHHHHhCCCcEEEEEcCC
Confidence 57888855543 3677788888999998776543
No 220
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=74.34 E-value=40 Score=32.97 Aligned_cols=27 Identities=7% Similarity=-0.020 Sum_probs=23.3
Q ss_pred CCeeEEEecCCcchHHHHHHHcCCceEEEe
Q 012744 106 EKTACLIADGAAGWAIEVAEKMKLRRAVVV 135 (457)
Q Consensus 106 ~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~ 135 (457)
.+||++|.. +.+..+|+++|||++.+.
T Consensus 349 ~~pDl~Ig~---s~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 349 YRPDLAIGT---TPLVQYAKEKGIPALYYT 375 (416)
T ss_pred cCCCEEEeC---ChhhHHHHHhCCCEEEec
Confidence 799999988 457788999999999964
No 221
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=74.32 E-value=23 Score=30.41 Aligned_cols=40 Identities=13% Similarity=0.321 Sum_probs=30.1
Q ss_pred EEEE-EcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 012744 5 HVVV-IPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHK 44 (457)
Q Consensus 5 ~vl~-~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~ 44 (457)
++++ +-..+-|=-.-...||..+..+|.+|.+++...++.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ 42 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRI 42 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSST
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCc
Confidence 4444 444566999999999999999999999999877643
No 222
>PRK06988 putative formyltransferase; Provisional
Probab=74.24 E-value=32 Score=32.11 Aligned_cols=33 Identities=21% Similarity=0.253 Sum_probs=23.9
Q ss_pred CEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCc
Q 012744 4 PHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEY 41 (457)
Q Consensus 4 ~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~ 41 (457)
+||+|+..+. -.+...+.|.++||+|..+.+..
T Consensus 3 mkIvf~Gs~~-----~a~~~L~~L~~~~~~i~~Vvt~~ 35 (312)
T PRK06988 3 PRAVVFAYHN-----VGVRCLQVLLARGVDVALVVTHE 35 (312)
T ss_pred cEEEEEeCcH-----HHHHHHHHHHhCCCCEEEEEcCC
Confidence 7899985543 34566778888999988877643
No 223
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=74.13 E-value=47 Score=34.91 Aligned_cols=101 Identities=17% Similarity=0.285 Sum_probs=60.5
Q ss_pred EEEEEcCCC-CcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHHH
Q 012744 5 HVVVIPNPE-QGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLLE 83 (457)
Q Consensus 5 ~vl~~~~~~-~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (457)
.+++.+..+ .|=-.-.+.|++.|.++|++|-++=+-... | + .. ....
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~~----------------------p--~----~~----~~~~ 51 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQP----------------------P--L----TM----SEVE 51 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcccC----------------------C--C----CH----HHHH
Confidence 466665554 488888999999999999999997642211 0 0 00 0000
Q ss_pred HHHH--hcchHHHHHHHHHhcCCCCCeeEEEecCCcc---------hHHHHHHHcCCceEEEechh
Q 012744 84 KRLQ--VMPGKLEGLIEEIHGREGEKTACLIADGAAG---------WAIEVAEKMKLRRAVVVITS 138 (457)
Q Consensus 84 ~~~~--~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~---------~~~~~A~~lgiP~v~~~~~~ 138 (457)
.+.. .....++.+++.+..-. .++|++|+|...+ ....+|+.++.|++.+.+..
T Consensus 52 ~~~~~~~~~~~~~~I~~~~~~l~-~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~~ 116 (684)
T PRK05632 52 ALLASGQLDELLEEIVARYHALA-KDCDVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGG 116 (684)
T ss_pred HHHhccCChHHHHHHHHHHHHhc-cCCCEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECCC
Confidence 0000 01112233333332211 5789999887643 24678999999999998764
No 224
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=73.60 E-value=14 Score=34.07 Aligned_cols=55 Identities=13% Similarity=0.187 Sum_probs=38.6
Q ss_pred cCCCccceeeccCcchhhhhhhc----CCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCC
Q 012744 342 THPSISCFMSHCGWNSTTEGVSN----GVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGD 417 (457)
Q Consensus 342 ~~~~~~~~I~HgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~ 417 (457)
..+++ +|+-||-||+.+++.. ++|++.+- . . .+|... .++.+++.++|.+++++
T Consensus 62 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn--------~-----G-~lGFL~------~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 62 ARADL--AVVLGGDGTMLGIGRQLAPYGVPLIGIN--------H-----G-RLGFIT------DIPLDDMQETLPPMLAG 119 (291)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEc--------C-----C-Cccccc------cCCHHHHHHHHHHHHcC
Confidence 34677 9999999999999763 67877662 1 1 233322 35778888888888865
Q ss_pred H
Q 012744 418 Q 418 (457)
Q Consensus 418 ~ 418 (457)
.
T Consensus 120 ~ 120 (291)
T PRK02155 120 N 120 (291)
T ss_pred C
Confidence 3
No 225
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=73.55 E-value=30 Score=33.92 Aligned_cols=27 Identities=7% Similarity=-0.022 Sum_probs=22.9
Q ss_pred CCeeEEEecCCcchHHHHHHHcCCceEEEe
Q 012744 106 EKTACLIADGAAGWAIEVAEKMKLRRAVVV 135 (457)
Q Consensus 106 ~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~ 135 (457)
.+||++|.. .-+..+|+++|||++.+.
T Consensus 354 ~~pDllig~---s~~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 354 FEPDLAIGT---TPLVQFAKEHGIPALYFT 380 (422)
T ss_pred CCCCEEEcC---CcchHHHHHcCCCEEEec
Confidence 799999988 346678999999999964
No 226
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=72.50 E-value=24 Score=31.82 Aligned_cols=100 Identities=8% Similarity=0.003 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhC---CCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHHHHHHHhcchHHH
Q 012744 18 IPLLELSQNLAKH---GLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLLEKRLQVMPGKLE 94 (457)
Q Consensus 18 ~p~~~la~~L~~~---Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (457)
--+.+|+++|.+. |++|+++.+........... +....++...+.++. ..-...+....... +.
T Consensus 14 ~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghai----T~~~pl~~~~~~~~~--yav~GTPaDCV~la-------l~ 80 (261)
T PRK13931 14 PGLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCI----SYTHPMMIAELGPRR--FAAEGSPADCVLAA-------LY 80 (261)
T ss_pred HhHHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccc----cCCCCeEEEEeCCCe--EEEcCchHHHHHHH-------HH
Confidence 3466777877663 47999998876543332111 112245555543211 00111222222221 12
Q ss_pred HHHHHHhcCCCCCeeEEEe----------cCCcc---hHHHHHHHcCCceEEEec
Q 012744 95 GLIEEIHGREGEKTACLIA----------DGAAG---WAIEVAEKMKLRRAVVVI 136 (457)
Q Consensus 95 ~~~~~l~~~~~~~~D~vv~----------D~~~~---~~~~~A~~lgiP~v~~~~ 136 (457)
.++.. .+||+||+ |.+++ .|+.-|..+|||.+.++-
T Consensus 81 ~~~~~------~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 81 DVMKD------APPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred HhcCC------CCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 22221 47899987 44444 445556778999999874
No 227
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=72.18 E-value=5 Score=33.70 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=24.1
Q ss_pred CEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012744 4 PHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYN 42 (457)
Q Consensus 4 ~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~ 42 (457)
|||.++. +.|++- ..|+++..+|||+||.++-...
T Consensus 1 mKIaiIg--AsG~~G--s~i~~EA~~RGHeVTAivRn~~ 35 (211)
T COG2910 1 MKIAIIG--ASGKAG--SRILKEALKRGHEVTAIVRNAS 35 (211)
T ss_pred CeEEEEe--cCchhH--HHHHHHHHhCCCeeEEEEeChH
Confidence 4565554 334433 3578899999999999986554
No 228
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=71.75 E-value=13 Score=33.41 Aligned_cols=95 Identities=13% Similarity=0.172 Sum_probs=53.1
Q ss_pred CEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHHH
Q 012744 4 PHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLLE 83 (457)
Q Consensus 4 ~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (457)
|||+++..-+.| ..|++.|.++|+ |++-+..++........ .++..... .++-
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~~g~-v~~sv~t~~g~~~~~~~------~~~~~v~~--G~lg------------- 53 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAEAGY-VIVSVATSYGGELLKPE------LPGLEVRV--GRLG------------- 53 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHhcCC-EEEEEEhhhhHhhhccc------cCCceEEE--CCCC-------------
Confidence 466666544444 478999999999 66555444443333210 01222111 0100
Q ss_pred HHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHHH-------HHHHcCCceEEEech
Q 012744 84 KRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAIE-------VAEKMKLRRAVVVIT 137 (457)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~-------~A~~lgiP~v~~~~~ 137 (457)
-...+.++++. .++|+| .|...++|.. +++.+|||++.+--.
T Consensus 54 -----~~~~l~~~l~~------~~i~~v-IDATHPfA~~is~na~~a~~~~~ipylR~eRp 102 (249)
T PF02571_consen 54 -----DEEGLAEFLRE------NGIDAV-IDATHPFAAEISQNAIEACRELGIPYLRFERP 102 (249)
T ss_pred -----CHHHHHHHHHh------CCCcEE-EECCCchHHHHHHHHHHHHhhcCcceEEEEcC
Confidence 11234455555 777865 5777775544 678899999997543
No 229
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=71.70 E-value=49 Score=26.31 Aligned_cols=60 Identities=13% Similarity=0.207 Sum_probs=43.9
Q ss_pred CCCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecC
Q 012744 2 SSPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIP 66 (457)
Q Consensus 2 ~~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (457)
++.||++-..++-+|-...--++..|...|++|.........+.+.+.... .+.+++.++
T Consensus 1 ~~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e-----~~adii~iS 60 (132)
T TIGR00640 1 RRPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVE-----ADVHVVGVS 60 (132)
T ss_pred CCCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH-----cCCCEEEEc
Confidence 367999999999999999999999999999999998864443332222110 266666665
No 230
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=71.67 E-value=11 Score=38.13 Aligned_cols=78 Identities=9% Similarity=0.037 Sum_probs=48.1
Q ss_pred chhhccCCCccceee---ccCc-chhhhhhhcCCceecccccc-chhhhHHhhhhhh-ceeEEeeccCCC--ccCHHHHH
Q 012744 337 QQKVLTHPSISCFMS---HCGW-NSTTEGVSNGVPFLCWPFFA-DQFMNTTYICDVW-KVGLRLERNQSG--IIGREEIK 408 (457)
Q Consensus 337 q~~ll~~~~~~~~I~---HgG~-~s~~eal~~GvP~l~~P~~~-DQ~~na~~v~~~l-G~g~~l~~~~~~--~~~~~~l~ 408 (457)
..++++.|++ +|. +=|+ -++.||+++|+|+|+..... ..... .+...- ..|+.+...... .-+.++|+
T Consensus 468 y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~--E~v~~~~~~gi~V~~r~~~~~~e~v~~La 543 (590)
T cd03793 468 YEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME--EHIEDPESYGIYIVDRRFKSPDESVQQLT 543 (590)
T ss_pred hHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH--HHhccCCCceEEEecCCccchHHHHHHHH
Confidence 4567888888 666 3454 49999999999999886532 22221 222110 256666521111 23568889
Q ss_pred HHHHHHhCCH
Q 012744 409 NKVDQVLGDQ 418 (457)
Q Consensus 409 ~~i~~~l~~~ 418 (457)
+++.+++..+
T Consensus 544 ~~m~~~~~~~ 553 (590)
T cd03793 544 QYMYEFCQLS 553 (590)
T ss_pred HHHHHHhCCc
Confidence 9999988543
No 231
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=71.62 E-value=60 Score=27.25 Aligned_cols=96 Identities=8% Similarity=0.087 Sum_probs=56.6
Q ss_pred CEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEE---eCC-cc--hhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcch
Q 012744 4 PHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFV---NSE-YN--HKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSD 77 (457)
Q Consensus 4 ~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~---~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (457)
--|.+++..+.|-....+.+|-+.+.+|++|.++ -.. .. ...+... ++.++....++.... .+
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~---------~~~~~~~g~g~~~~~--~~ 74 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPH---------GVEFQVMGTGFTWET--QN 74 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhc---------CcEEEECCCCCeecC--CC
Confidence 3577888899999999999999999999999655 333 11 1122222 677777765543221 11
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCc
Q 012744 78 MRKLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAA 117 (457)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~ 117 (457)
....... ....++...+.+.. .++|+||-|...
T Consensus 75 ~~~~~~~----~~~~~~~a~~~l~~---~~~DlvVLDEi~ 107 (173)
T TIGR00708 75 READTAI----AKAAWQHAKEMLAD---PELDLVLLDELT 107 (173)
T ss_pred cHHHHHH----HHHHHHHHHHHHhc---CCCCEEEehhhH
Confidence 1111111 11223333333333 789999999654
No 232
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=71.58 E-value=24 Score=29.19 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=23.3
Q ss_pred CCCCcChHHHHHHHHHHHhCCCeEEEE
Q 012744 11 NPEQGHVIPLLELSQNLAKHGLRITFV 37 (457)
Q Consensus 11 ~~~~GH~~p~~~la~~L~~~Gh~Vt~~ 37 (457)
.++.|--.-.+.|++.|+++|.+|.++
T Consensus 6 ~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 6 DTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 345588888999999999999999886
No 233
>PRK06849 hypothetical protein; Provisional
Probab=71.53 E-value=24 Score=34.11 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=28.1
Q ss_pred CC-CCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012744 1 MS-SPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYN 42 (457)
Q Consensus 1 m~-~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~ 42 (457)
|+ +++|+++... ....+.+|+.|.++||+|+++.....
T Consensus 1 ~~~~~~VLI~G~~----~~~~l~iar~l~~~G~~Vi~~d~~~~ 39 (389)
T PRK06849 1 MNTKKTVLITGAR----APAALELARLFHNAGHTVILADSLKY 39 (389)
T ss_pred CCCCCEEEEeCCC----cHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 45 5677666322 22588999999999999999987653
No 234
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=71.06 E-value=27 Score=29.55 Aligned_cols=89 Identities=15% Similarity=0.093 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCC--CCCCC----CCcchHHHHHHHHHHhcc
Q 012744 17 VIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPD--GMEPW----DDRSDMRKLLEKRLQVMP 90 (457)
Q Consensus 17 ~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~ 90 (457)
-.-+..+|+.|.+.|+++. ++....+.++.. |+....+.+ +.|+. -++-++.-+-..+...-.
T Consensus 10 K~~l~~lAk~L~~lGf~I~--AT~GTAk~L~e~---------GI~v~~V~k~TgfpE~l~GRVKTLHP~ihggiL~~~~~ 78 (187)
T cd01421 10 KTGLVEFAKELVELGVEIL--STGGTAKFLKEA---------GIPVTDVSDITGFPEILGGRVKTLHPKIHGGILARRDN 78 (187)
T ss_pred cccHHHHHHHHHHCCCEEE--EccHHHHHHHHc---------CCeEEEhhhccCCcHhhCCccccCChhhhhhhhcCCCC
Confidence 3457899999999999984 566677788876 777666642 33332 134444433333322222
Q ss_pred hHHHHHHHHHhcCCCCCeeEEEecCCcchHH
Q 012744 91 GKLEGLIEEIHGREGEKTACLIADGAAGWAI 121 (457)
Q Consensus 91 ~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~ 121 (457)
+.-. -++.. .-...|+||+. ++++-.
T Consensus 79 ~~~~-~~~~~---~i~~idlVvvN-lYpF~~ 104 (187)
T cd01421 79 EEHK-DLEEH---GIEPIDLVVVN-LYPFEE 104 (187)
T ss_pred hhHH-HHHHc---CCCCeeEEEEc-ccChHH
Confidence 2222 22222 21678999999 444333
No 235
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=70.37 E-value=11 Score=33.54 Aligned_cols=94 Identities=10% Similarity=0.148 Sum_probs=53.4
Q ss_pred CCeEEEEEeCCcc---cCCHHHHHHHHHHHhhcCCcEEEEEcCCCCCCCcCCCchhHHHHhc----CCce-eecCCC--c
Q 012744 268 ANSVIYVAFGSHT---VLEQNQFQELALGLEICNRSFLWVVRPDITNDANDAYPEGFRERVA----ARGQ-MISWSP--Q 337 (457)
Q Consensus 268 ~~~~v~vs~Gs~~---~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----~nv~-~~~~~p--q 337 (457)
+++.|.+..|+.. .++.+.+.++++.+.+.++.+++..+.. +. .....+... .++. +.+-.. +
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~l~e 176 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPE------EQ-EKEIADQIAAGLQNPVINLAGKTSLRE 176 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSH------HH-HHHHHHHHHTTHTTTTEEETTTS-HHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccch------HH-HHHHHHHHHHhcccceEeecCCCCHHH
Confidence 4568888888863 3577889999999988887766555433 10 111222222 2232 333332 3
Q ss_pred -hhhccCCCccceeeccCcchhhhhhhcCCceecc
Q 012744 338 -QKVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCW 371 (457)
Q Consensus 338 -~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~ 371 (457)
..++.++++ +|+.- .|.+.=|.+.|+|+|++
T Consensus 177 ~~ali~~a~~--~I~~D-tg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 177 LAALISRADL--VIGND-TGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHHTSSE--EEEES-SHHHHHHHHTT--EEEE
T ss_pred HHHHHhcCCE--EEecC-ChHHHHHHHHhCCEEEE
Confidence 369999998 88874 56888889999999988
No 236
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=69.45 E-value=49 Score=32.78 Aligned_cols=104 Identities=15% Similarity=0.214 Sum_probs=59.6
Q ss_pred EEEEEcCCC-CcChHHHHHHHHHHHhCCCeEEEEeCCcc-hh--HHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHH
Q 012744 5 HVVVIPNPE-QGHVIPLLELSQNLAKHGLRITFVNSEYN-HK--RVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRK 80 (457)
Q Consensus 5 ~vl~~~~~~-~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (457)
++++....+ .|=-.-...|++.|+++|++|..+-+... .+ ..... .+.....+. ..
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd~~d~~~~~~~--------~g~~~~~ld----~~-------- 64 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPDYIDPAYHTAA--------TGRPSRNLD----SW-------- 64 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCCcccHHHHHHH--------hCCCcccCC----ce--------
Confidence 455554443 37888899999999999999998865321 11 00000 011100000 00
Q ss_pred HHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCC------------cchHHHHHHHcCCceEEEechh
Q 012744 81 LLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGA------------AGWAIEVAEKMKLRRAVVVITS 138 (457)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~------------~~~~~~~A~~lgiP~v~~~~~~ 138 (457)
......+.+.++.+. .+.|++|++.. ......+|+.++.|++.+....
T Consensus 65 ------~~~~~~v~~~~~~~~----~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~pviLV~~~~ 124 (451)
T PRK01077 65 ------MMGEELVRALFARAA----QGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAPVVLVVDAS 124 (451)
T ss_pred ------eCCHHHHHHHHHHhc----ccCCEEEEECCCccccCCccCCCCCCHHHHHHHhCCCEEEEECCc
Confidence 000123444444433 46799997543 1246789999999999998654
No 237
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=69.28 E-value=32 Score=33.84 Aligned_cols=87 Identities=15% Similarity=0.121 Sum_probs=52.5
Q ss_pred CCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHH
Q 012744 3 SPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLL 82 (457)
Q Consensus 3 ~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (457)
.+|+++.. +-.....+++.|.+-|-+|..+......+..... +.+.. ...+.
T Consensus 311 Gkrvai~~-----~~~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~~----------------~~~~~---~~~D~---- 362 (432)
T TIGR01285 311 GKKVAIAA-----EPDLLAAWATFFTSMGAQIVAAVTTTGSPLLQKL----------------PVETV---VIGDL---- 362 (432)
T ss_pred CCEEEEEc-----CHHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHhC----------------CcCcE---EeCCH----
Confidence 34565554 2246688888888889888877765543322111 00000 00011
Q ss_pred HHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEEE
Q 012744 83 EKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAVV 134 (457)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~ 134 (457)
..++++++. .++|+++... ....+|+++|||++.+
T Consensus 363 --------~~l~~~i~~------~~~dliig~s---~~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 363 --------EDLEDLACA------AGADLLITNS---HGRALAQRLALPLVRA 397 (432)
T ss_pred --------HHHHHHHhh------cCCCEEEECc---chHHHHHHcCCCEEEe
Confidence 123444444 7899999884 5588999999999985
No 238
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=68.51 E-value=22 Score=29.46 Aligned_cols=109 Identities=20% Similarity=0.190 Sum_probs=56.2
Q ss_pred EEEEcCCCCcChHH----HHHHHHHHHhC-CCeEEEEeCCc---chhHHHhhhcCCCCCCCCe-EEEecCCCCCCCCCcc
Q 012744 6 VVVIPNPEQGHVIP----LLELSQNLAKH-GLRITFVNSEY---NHKRVLESLEGKNYIGEQI-HLVSIPDGMEPWDDRS 76 (457)
Q Consensus 6 vl~~~~~~~GH~~p----~~~la~~L~~~-Gh~Vt~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 76 (457)
|+++.-...|.+++ .+..|++|++. |.+|+.++... ..+.++..... -|+ +.+.+++..-...
T Consensus 2 ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~-----~G~d~v~~~~~~~~~~~--- 73 (164)
T PF01012_consen 2 ILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAK-----YGADKVYHIDDPALAEY--- 73 (164)
T ss_dssp EEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHS-----TTESEEEEEE-GGGTTC---
T ss_pred EEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhh-----cCCcEEEEecCcccccc---
Confidence 34444333555555 67889999874 78888777543 22221111100 144 2333321110000
Q ss_pred hHHHHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcc---hHHHHHHHcCCceEEEec
Q 012744 77 DMRKLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAG---WAIEVAEKMKLRRAVVVI 136 (457)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~---~~~~~A~~lgiP~v~~~~ 136 (457)
+ .......+.++++. .+||+|+.-.... .+..+|.++|.|++.-..
T Consensus 74 ~--------~~~~a~~l~~~~~~------~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 74 D--------PEAYADALAELIKE------EGPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp ---------HHHHHHHHHHHHHH------HT-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred C--------HHHHHHHHHHHHHh------cCCCEEEEcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 0 01111234455555 6899999987665 778899999999998543
No 239
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=68.49 E-value=48 Score=32.55 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=22.8
Q ss_pred CCeeEEEecCCcchHHHHHHHcCCceEEE
Q 012744 106 EKTACLIADGAAGWAIEVAEKMKLRRAVV 134 (457)
Q Consensus 106 ~~~D~vv~D~~~~~~~~~A~~lgiP~v~~ 134 (457)
.+||++|.+. ....+|+++|||++.+
T Consensus 371 ~~~dliiG~s---~~~~~a~~~~ip~~~~ 396 (429)
T cd03466 371 LKIDVLIGNS---YGRRIAEKLGIPLIRI 396 (429)
T ss_pred cCCCEEEECc---hhHHHHHHcCCCEEEe
Confidence 7899999995 4678899999999875
No 240
>PRK08506 replicative DNA helicase; Provisional
Probab=68.47 E-value=36 Score=33.87 Aligned_cols=42 Identities=12% Similarity=0.334 Sum_probs=33.6
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHH
Q 012744 6 VVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVL 47 (457)
Q Consensus 6 vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~ 47 (457)
+++...|+.|=-.-.+.+|...++.|+.|.|++..-....+.
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~ 236 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLM 236 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHH
Confidence 455667788999999999998888999999999877655444
No 241
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=67.47 E-value=79 Score=27.01 Aligned_cols=103 Identities=9% Similarity=0.079 Sum_probs=55.8
Q ss_pred CEEEEEcCCCCcChHHHHHHHHHHHhCCC--eEEEEeCCc--ch--hHHHhhhcCCCCCCCCeEEEecCC-CCCCCCCcc
Q 012744 4 PHVVVIPNPEQGHVIPLLELSQNLAKHGL--RITFVNSEY--NH--KRVLESLEGKNYIGEQIHLVSIPD-GMEPWDDRS 76 (457)
Q Consensus 4 ~~vl~~~~~~~GH~~p~~~la~~L~~~Gh--~Vt~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 76 (457)
+||+++..|..+- +.++.+.+.+.++ +|.++.+.. .. +...+. |+.++.++. .+..
T Consensus 1 ~riail~sg~gs~---~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~---------gip~~~~~~~~~~~----- 63 (190)
T TIGR00639 1 KRIVVLISGNGSN---LQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQA---------GIPTFVLSLKDFPS----- 63 (190)
T ss_pred CeEEEEEcCCChh---HHHHHHHHHcCCCCceEEEEEECCccchHHHHHHHc---------CCCEEEECccccCc-----
Confidence 4788887766554 4466777776665 677654433 21 223333 666655432 1110
Q ss_pred hHHHHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcc-hHHHHHHHcCCceEEEechh
Q 012744 77 DMRKLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAG-WAIEVAEKMKLRRAVVVITS 138 (457)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~-~~~~~A~~lgiP~v~~~~~~ 138 (457)
.......+.++++. .++|++|+-.+.. ....+-+.....++-++++.
T Consensus 64 ---------~~~~~~~~~~~l~~------~~~D~iv~~~~~~il~~~~l~~~~~~~iNiHpsl 111 (190)
T TIGR00639 64 ---------REAFDQAIIEELRA------HEVDLVVLAGFMRILGPTFLSRFAGRILNIHPSL 111 (190)
T ss_pred ---------hhhhhHHHHHHHHh------cCCCEEEEeCcchhCCHHHHhhccCCEEEEeCCc
Confidence 11112233444444 8999998876544 44455555555677766553
No 242
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=67.08 E-value=52 Score=29.33 Aligned_cols=30 Identities=17% Similarity=0.201 Sum_probs=26.1
Q ss_pred CCCCcChHHHHHHHHHHHhCCCeEEEEeCC
Q 012744 11 NPEQGHVIPLLELSQNLAKHGLRITFVNSE 40 (457)
Q Consensus 11 ~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~ 40 (457)
-|+.|=-.-...||..|++.|++|..+=-.
T Consensus 10 kGGvG~TTltAnLA~aL~~~G~~VlaID~d 39 (243)
T PF06564_consen 10 KGGVGKTTLTANLAWALARLGESVLAIDLD 39 (243)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 456799999999999999999999998643
No 243
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=67.07 E-value=29 Score=30.66 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=25.0
Q ss_pred CeeE-EEecCCcc-hHHHHHHHcCCceEEEechhh
Q 012744 107 KTAC-LIADGAAG-WAIEVAEKMKLRRAVVVITSA 139 (457)
Q Consensus 107 ~~D~-vv~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 139 (457)
-||+ +|.|+..- -|..=|.++|||+|.+..+-.
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNC 190 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCC
Confidence 3887 56776555 677779999999999876544
No 244
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=66.93 E-value=14 Score=34.45 Aligned_cols=43 Identities=21% Similarity=0.262 Sum_probs=32.3
Q ss_pred CCCCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhh
Q 012744 1 MSSPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLES 49 (457)
Q Consensus 1 m~~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~ 49 (457)
|++|||+++-.|+.| ..+|..|+++||+|+++.... .+.+...
T Consensus 3 ~~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~-~~~~~~~ 45 (313)
T PRK06249 3 SETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD-YEAVREN 45 (313)
T ss_pred CcCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC-HHHHHhC
Confidence 558899999777776 356788999999999998754 3444443
No 245
>PHA02542 41 41 helicase; Provisional
Probab=66.09 E-value=41 Score=33.48 Aligned_cols=41 Identities=15% Similarity=0.367 Sum_probs=33.2
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHH
Q 012744 6 VVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRV 46 (457)
Q Consensus 6 vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~ 46 (457)
+++..-|+.|=-.-.+.+|...++.|+.|.|++-.-..+.+
T Consensus 193 iiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql 233 (473)
T PHA02542 193 NVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVI 233 (473)
T ss_pred EEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHH
Confidence 45566788899999999999988899999999876655533
No 246
>PRK07206 hypothetical protein; Provisional
Probab=65.30 E-value=32 Score=33.58 Aligned_cols=35 Identities=23% Similarity=0.205 Sum_probs=24.5
Q ss_pred CCCCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCc
Q 012744 1 MSSPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEY 41 (457)
Q Consensus 1 m~~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~ 41 (457)
|.| +++++-.... -..++++++++|+++++++...
T Consensus 1 ~~k-~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~ 35 (416)
T PRK07206 1 MMK-KVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSC 35 (416)
T ss_pred CCC-eEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCC
Confidence 444 4666654333 3468999999999999888654
No 247
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=65.16 E-value=30 Score=30.98 Aligned_cols=90 Identities=12% Similarity=0.139 Sum_probs=52.1
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHHHH
Q 012744 5 HVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLLEK 84 (457)
Q Consensus 5 ~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (457)
+|+++..-+.| ..||+.|.++|+.|++-+...... .. . .+..... ..+.
T Consensus 4 ~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~~g~-~~-~--------~~~~v~~--G~l~-------------- 52 (248)
T PRK08057 4 RILLLGGTSEA-----RALARALAAAGVDIVLSLAGRTGG-PA-D--------LPGPVRV--GGFG-------------- 52 (248)
T ss_pred eEEEEechHHH-----HHHHHHHHhCCCeEEEEEccCCCC-cc-c--------CCceEEE--CCCC--------------
Confidence 45555443334 468999999999888776655433 11 1 1222211 0000
Q ss_pred HHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHH-------HHHHHcCCceEEEec
Q 012744 85 RLQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAI-------EVAEKMKLRRAVVVI 136 (457)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~-------~~A~~lgiP~v~~~~ 136 (457)
-...+.++++. .++++ |.|...++|. .+++.+|||++.+.-
T Consensus 53 ----~~~~l~~~l~~------~~i~~-VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR 100 (248)
T PRK08057 53 ----GAEGLAAYLRE------EGIDL-VIDATHPYAAQISANAAAACRALGIPYLRLER 100 (248)
T ss_pred ----CHHHHHHHHHH------CCCCE-EEECCCccHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 11234455555 77887 5687777554 467889999999753
No 248
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=64.95 E-value=13 Score=33.53 Aligned_cols=47 Identities=15% Similarity=0.328 Sum_probs=38.3
Q ss_pred CCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhh
Q 012744 3 SPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLES 49 (457)
Q Consensus 3 ~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~ 49 (457)
...++|+-.++.|=-.=..+||.+|.++|+.|+|++.+.....+...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH
Confidence 35678888888887778899999999999999999998876666543
No 249
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=64.43 E-value=51 Score=32.26 Aligned_cols=42 Identities=21% Similarity=0.415 Sum_probs=32.7
Q ss_pred EEEEcCCCCcChHHHHHHHHHHH-hCCCeEEEEeCCcchhHHH
Q 012744 6 VVVIPNPEQGHVIPLLELSQNLA-KHGLRITFVNSEYNHKRVL 47 (457)
Q Consensus 6 vl~~~~~~~GH~~p~~~la~~L~-~~Gh~Vt~~~~~~~~~~~~ 47 (457)
+++...|+.|=-.-++.+|..++ +.|+.|.|++..-....+.
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~ 239 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLG 239 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHH
Confidence 45566778898999999998887 6799999999776655443
No 250
>PRK05595 replicative DNA helicase; Provisional
Probab=64.32 E-value=37 Score=33.51 Aligned_cols=42 Identities=14% Similarity=0.364 Sum_probs=31.9
Q ss_pred EEEEcCCCCcChHHHHHHHHHHH-hCCCeEEEEeCCcchhHHH
Q 012744 6 VVVIPNPEQGHVIPLLELSQNLA-KHGLRITFVNSEYNHKRVL 47 (457)
Q Consensus 6 vl~~~~~~~GH~~p~~~la~~L~-~~Gh~Vt~~~~~~~~~~~~ 47 (457)
+++-..|+.|=-.-.+.+|..++ +.|+.|.|++..-..+.+.
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~ 246 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLA 246 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHH
Confidence 34556778888888999998775 5799999999877655443
No 251
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=64.30 E-value=11 Score=34.02 Aligned_cols=124 Identities=15% Similarity=0.202 Sum_probs=70.6
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhC-CCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHH---
Q 012744 6 VVVIPNPEQGHVIPLLELSQNLAKH-GLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKL--- 81 (457)
Q Consensus 6 vl~~~~~~~GH~~p~~~la~~L~~~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 81 (457)
+++...|+.|--.-++.+|..++.+ |+.|.+++..-..+.+........ .++....+..+. ....++...
T Consensus 22 ~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~---s~v~~~~i~~g~---l~~~e~~~~~~~ 95 (259)
T PF03796_consen 22 TVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARL---SGVPYNKIRSGD---LSDEEFERLQAA 95 (259)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHH---HTSTHHHHHCCG---CHHHHHHHHHHH
T ss_pred EEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHh---hcchhhhhhccc---cCHHHHHHHHHH
Confidence 3556677889999999999999887 699999998876655443211000 133222221110 011112221
Q ss_pred HHHHHHh----------cchHHHHHHHHHhcCCCCCeeEEEecCCcc--h-----------------HHHHHHHcCCceE
Q 012744 82 LEKRLQV----------MPGKLEGLIEEIHGREGEKTACLIADGAAG--W-----------------AIEVAEKMKLRRA 132 (457)
Q Consensus 82 ~~~~~~~----------~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~--~-----------------~~~~A~~lgiP~v 132 (457)
...+... ....+.+.++.++... .+.|+||+|.... . ...+|.+++||++
T Consensus 96 ~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~-~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi 174 (259)
T PF03796_consen 96 AEKLSDLPLYIEDTPSLTIDDIESKIRRLKREG-KKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKELNIPVI 174 (259)
T ss_dssp HHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHS-TTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhc-cCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHcCCeEE
Confidence 1111110 1224555666665543 5789999997544 1 2347888999999
Q ss_pred EEec
Q 012744 133 VVVI 136 (457)
Q Consensus 133 ~~~~ 136 (457)
.++.
T Consensus 175 ~~sQ 178 (259)
T PF03796_consen 175 ALSQ 178 (259)
T ss_dssp EEEE
T ss_pred Eccc
Confidence 9754
No 252
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=63.65 E-value=63 Score=27.48 Aligned_cols=40 Identities=25% Similarity=0.290 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCcchhHH-HhhhcCCCCCCCCeEEEecC
Q 012744 19 PLLELSQNLAKHGLRITFVNSEYNHKRV-LESLEGKNYIGEQIHLVSIP 66 (457)
Q Consensus 19 p~~~la~~L~~~Gh~Vt~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 66 (457)
-.-.|+..|+++||+|++.|.....+.- ... .|++...+|
T Consensus 22 ~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y--------~gv~l~~i~ 62 (185)
T PF09314_consen 22 FVEELAPRLVSKGIDVTVYCRSDYYPYKEFEY--------NGVRLVYIP 62 (185)
T ss_pred HHHHHHHHHhcCCceEEEEEccCCCCCCCccc--------CCeEEEEeC
Confidence 3556778888899999999976554322 222 477777776
No 253
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=62.67 E-value=12 Score=37.02 Aligned_cols=41 Identities=15% Similarity=0.399 Sum_probs=34.3
Q ss_pred CCCEEEEEcCCCCcChHHH------------HHHHHHHHhCCCeEEEEeCCcc
Q 012744 2 SSPHVVVIPNPEQGHVIPL------------LELSQNLAKHGLRITFVNSEYN 42 (457)
Q Consensus 2 ~~~~vl~~~~~~~GH~~p~------------~~la~~L~~~Gh~Vt~~~~~~~ 42 (457)
+.+||++...|+.=.+.|. .+||+++..+|++||+++.+..
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~ 307 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVD 307 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcC
Confidence 3568898888888888774 6899999999999999997653
No 254
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=62.52 E-value=88 Score=28.78 Aligned_cols=104 Identities=13% Similarity=0.024 Sum_probs=58.1
Q ss_pred CCEEEEEcCCCCcChHHHHHHHHHHHh--CCCeEEEEeC-C-cchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchH
Q 012744 3 SPHVVVIPNPEQGHVIPLLELSQNLAK--HGLRITFVNS-E-YNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDM 78 (457)
Q Consensus 3 ~~~vl~~~~~~~GH~~p~~~la~~L~~--~Gh~Vt~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (457)
++||+++..+..+. +.+|.++... .+++|.++.+ . .......+. |+.+..++... . .
T Consensus 89 ~~ri~vl~Sg~g~n---l~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~---------gIp~~~~~~~~--~-~---- 149 (286)
T PRK13011 89 RPKVLIMVSKFDHC---LNDLLYRWRIGELPMDIVGVVSNHPDLEPLAAWH---------GIPFHHFPITP--D-T---- 149 (286)
T ss_pred CceEEEEEcCCccc---HHHHHHHHHcCCCCcEEEEEEECCccHHHHHHHh---------CCCEEEeCCCc--C-c----
Confidence 67999998886433 3444444433 3688888754 3 233344444 77777665321 0 0
Q ss_pred HHHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcc-hHHHHHHHcCCceEEEechh
Q 012744 79 RKLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAG-WAIEVAEKMKLRRAVVVITS 138 (457)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~-~~~~~A~~lgiP~v~~~~~~ 138 (457)
.......+.++++. .++|++|.-.+.. ....+-+.+.-.++-++++.
T Consensus 150 -------~~~~~~~~~~~l~~------~~~Dlivlagy~~il~~~~l~~~~~~iiNiHpSL 197 (286)
T PRK13011 150 -------KPQQEAQVLDVVEE------SGAELVVLARYMQVLSPELCRKLAGRAINIHHSF 197 (286)
T ss_pred -------hhhhHHHHHHHHHH------hCcCEEEEeChhhhCCHHHHhhccCCeEEecccc
Confidence 00111123334444 7899988876654 55556666666677766553
No 255
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=62.50 E-value=72 Score=29.20 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcCCCCCeeEEEecCCcc--hHHHHHHHcCCceEEEec
Q 012744 92 KLEGLIEEIHGREGEKTACLIADGAAG--WAIEVAEKMKLRRAVVVI 136 (457)
Q Consensus 92 ~~~~~~~~l~~~~~~~~D~vv~D~~~~--~~~~~A~~lgiP~v~~~~ 136 (457)
.+.++++.+++ .+..+|+++.... .+..+|+..|++.+.+.+
T Consensus 208 ~l~~l~~~ik~---~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~ 251 (282)
T cd01017 208 QLAELVEFVKK---SDVKYIFFEENASSKIAETLAKETGAKLLVLNP 251 (282)
T ss_pred HHHHHHHHHHH---cCCCEEEEeCCCChHHHHHHHHHcCCcEEEecc
Confidence 45566666666 7899999998776 667799999999987654
No 256
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=62.43 E-value=10 Score=32.20 Aligned_cols=44 Identities=14% Similarity=0.218 Sum_probs=34.5
Q ss_pred CEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHh
Q 012744 4 PHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLE 48 (457)
Q Consensus 4 ~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~ 48 (457)
+||++...|+.|=+. ...+.+.|.++|++|.++.++.....+..
T Consensus 2 k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~fi~~ 45 (182)
T PRK07313 2 KNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKFITP 45 (182)
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHHcCH
Confidence 457776666666554 79999999999999999999887666653
No 257
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=62.40 E-value=30 Score=32.52 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=29.3
Q ss_pred EcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012744 9 IPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYN 42 (457)
Q Consensus 9 ~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~ 42 (457)
++.|++|=.=-...|++.|.++|++|.+++-.+-
T Consensus 43 ltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg 76 (326)
T PF02606_consen 43 LTVGGTGKTPLVIWLARLLQARGYRPAILSRGYG 76 (326)
T ss_pred cccCCCCchHHHHHHHHHHHhcCCceEEEcCCCC
Confidence 4577888888899999999999999999997554
No 258
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=62.01 E-value=1.6e+02 Score=28.54 Aligned_cols=98 Identities=10% Similarity=0.031 Sum_probs=57.1
Q ss_pred CCCeEEEEEeCCcccCCHHHHHHHHHHHhhcCCcEEEEEcCCCCCCCcCCCchhHHHHhcCCce-eecCCCchhhccCCC
Q 012744 267 QANSVIYVAFGSHTVLEQNQFQELALGLEICNRSFLWVVRPDITNDANDAYPEGFRERVAARGQ-MISWSPQQKVLTHPS 345 (457)
Q Consensus 267 ~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~-~~~~~pq~~ll~~~~ 345 (457)
.+||.|-+|+ ......-.+.+.+.|++.++.+++....... ..--+.+. -.+.+- +.+...+.. - ..
T Consensus 183 ~~kp~I~iTm---fGvTTp~V~~~~~~Le~~G~Ev~VFHAtG~G----G~aME~Li--~~G~~~~VlDlTttEl-~--d~ 250 (403)
T PF06792_consen 183 EDKPLIGITM---FGVTTPCVDAIRERLEEEGYEVLVFHATGTG----GRAMERLI--REGQFDGVLDLTTTEL-A--DE 250 (403)
T ss_pred CCCcEEEEEC---CCCcHHHHHHHHHHHHhcCCeEEEEcCCCCc----hHHHHHHH--HcCCcEEEEECcHHHH-H--HH
Confidence 3466777753 3334566788888888889999887654311 11111111 012222 334444431 0 00
Q ss_pred ccceeeccCcchhhhhhhcCCceeccccccc
Q 012744 346 ISCFMSHCGWNSTTEGVSNGVPFLCWPFFAD 376 (457)
Q Consensus 346 ~~~~I~HgG~~s~~eal~~GvP~l~~P~~~D 376 (457)
+-+-|..+|-.=.-.|...|+|+|+.|-..|
T Consensus 251 l~GGv~sagp~Rl~AA~~~GIP~Vvs~GalD 281 (403)
T PF06792_consen 251 LFGGVLSAGPDRLEAAARAGIPQVVSPGALD 281 (403)
T ss_pred HhCCCCCCCchHHHHHHHcCCCEEEecCccc
Confidence 1114667788888889999999999997655
No 259
>PRK10867 signal recognition particle protein; Provisional
Probab=61.86 E-value=60 Score=31.88 Aligned_cols=41 Identities=12% Similarity=0.211 Sum_probs=33.5
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhC-CCeEEEEeCCcchhHH
Q 012744 6 VVVIPNPEQGHVIPLLELSQNLAKH-GLRITFVNSEYNHKRV 46 (457)
Q Consensus 6 vl~~~~~~~GH~~p~~~la~~L~~~-Gh~Vt~~~~~~~~~~~ 46 (457)
++|+-.++.|=-.-...||..|+++ |+.|.+++...+....
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa 144 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAA 144 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHH
Confidence 4555566779999999999999999 9999999987766543
No 260
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.56 E-value=63 Score=31.90 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=24.9
Q ss_pred CCCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCc
Q 012744 2 SSPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEY 41 (457)
Q Consensus 2 ~~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~ 41 (457)
+.++++++- .|. .- .++|+.|+++||+|++.....
T Consensus 4 ~~k~v~iiG---~g~-~G-~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVG---AGV-SG-LALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEEC---CCH-HH-HHHHHHHHHCCCEEEEEeCCc
Confidence 356776663 233 22 499999999999999887643
No 261
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=61.20 E-value=27 Score=34.20 Aligned_cols=38 Identities=18% Similarity=0.109 Sum_probs=28.7
Q ss_pred CC-CCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcch
Q 012744 1 MS-SPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNH 43 (457)
Q Consensus 1 m~-~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~ 43 (457)
|+ .||||++-.|++-| +|+++|++-++...+++.|.+.
T Consensus 1 ~~~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn~ 39 (426)
T PRK13789 1 MQVKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGNG 39 (426)
T ss_pred CCCCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCch
Confidence 55 47999999888777 6899999988665666655553
No 262
>PRK09165 replicative DNA helicase; Provisional
Probab=61.09 E-value=46 Score=33.43 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=31.7
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhC---------------CCeEEEEeCCcchhHHHh
Q 012744 6 VVVIPNPEQGHVIPLLELSQNLAKH---------------GLRITFVNSEYNHKRVLE 48 (457)
Q Consensus 6 vl~~~~~~~GH~~p~~~la~~L~~~---------------Gh~Vt~~~~~~~~~~~~~ 48 (457)
+++...|+.|=-.-.+.+|...+.+ |..|.|++..-..+.+..
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~ 277 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLAT 277 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHH
Confidence 4556677888888888888887653 789999998777655543
No 263
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=61.09 E-value=1e+02 Score=28.74 Aligned_cols=33 Identities=6% Similarity=-0.038 Sum_probs=24.0
Q ss_pred CCeeEEEecCCcc-hHHHHHHHcCCceEEEechh
Q 012744 106 EKTACLIADGAAG-WAIEVAEKMKLRRAVVVITS 138 (457)
Q Consensus 106 ~~~D~vv~D~~~~-~~~~~A~~lgiP~v~~~~~~ 138 (457)
.+||++|+=.+.. ....+-+.....++.++++.
T Consensus 77 ~~~Dliv~~~~~~iip~~il~~~~~g~iNiHpsl 110 (309)
T PRK00005 77 LNADVIVVVAYGQILPKAVLDIPRLGCINLHASL 110 (309)
T ss_pred cCcCEEEEehhhcccCHHHHhcCCCCEEEEeCcc
Confidence 7999988865533 55555666677788888876
No 264
>PLN02929 NADH kinase
Probab=61.04 E-value=38 Score=31.27 Aligned_cols=67 Identities=12% Similarity=0.137 Sum_probs=43.7
Q ss_pred cCCCccceeeccCcchhhhhhh---cCCceecccccc------chhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHH
Q 012744 342 THPSISCFMSHCGWNSTTEGVS---NGVPFLCWPFFA------DQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVD 412 (457)
Q Consensus 342 ~~~~~~~~I~HgG~~s~~eal~---~GvP~l~~P~~~------DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~ 412 (457)
..+++ +|+-||-||+..+.. .++|++.+=..- +++.|..- +.+ .+|..- .++.+++.++|.
T Consensus 63 ~~~Dl--vi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~-~~r-~lGfL~------~~~~~~~~~~L~ 132 (301)
T PLN02929 63 RDVDL--VVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD-ARR-STGHLC------AATAEDFEQVLD 132 (301)
T ss_pred CCCCE--EEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc-ccc-Cccccc------cCCHHHHHHHHH
Confidence 34566 999999999999844 478988764431 12333321 111 355443 257899999999
Q ss_pred HHhCCH
Q 012744 413 QVLGDQ 418 (457)
Q Consensus 413 ~~l~~~ 418 (457)
+++++.
T Consensus 133 ~il~g~ 138 (301)
T PLN02929 133 DVLFGR 138 (301)
T ss_pred HHHcCC
Confidence 999764
No 265
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=61.04 E-value=98 Score=25.88 Aligned_cols=95 Identities=14% Similarity=0.215 Sum_probs=59.3
Q ss_pred HHHHHHHHHhCCCeEEEEeCCcc-hhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHHHHHHHhcchHHHHHHH
Q 012744 20 LLELSQNLAKHGLRITFVNSEYN-HKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLLEKRLQVMPGKLEGLIE 98 (457)
Q Consensus 20 ~~~la~~L~~~Gh~Vt~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (457)
+..+.+...++|..|.+++.... .+.+.+.. ....+++++....++.. -....+++++
T Consensus 37 ~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l---~~~yP~l~ivg~~~g~f------------------~~~~~~~i~~ 95 (172)
T PF03808_consen 37 FPDLLRRAEQRGKRIFLLGGSEEVLEKAAANL---RRRYPGLRIVGYHHGYF------------------DEEEEEAIIN 95 (172)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHH---HHHCCCeEEEEecCCCC------------------ChhhHHHHHH
Confidence 45566667778999999987553 22221111 12236888876654432 1134556666
Q ss_pred HHhcCCCCCeeEEEecCCcc----hHHHHHHHcCCceEEEechhh
Q 012744 99 EIHGREGEKTACLIADGAAG----WAIEVAEKMKLRRAVVVITSA 139 (457)
Q Consensus 99 ~l~~~~~~~~D~vv~D~~~~----~~~~~A~~lgiP~v~~~~~~~ 139 (457)
.|.+ .+||+|++-.-.+ |.....+.++.+ +.+..+.+
T Consensus 96 ~I~~---~~pdiv~vglG~PkQE~~~~~~~~~l~~~-v~i~vG~~ 136 (172)
T PF03808_consen 96 RINA---SGPDIVFVGLGAPKQERWIARHRQRLPAG-VIIGVGGA 136 (172)
T ss_pred HHHH---cCCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEECch
Confidence 6666 8999999987776 777777888888 44444444
No 266
>PRK06321 replicative DNA helicase; Provisional
Probab=61.02 E-value=63 Score=32.16 Aligned_cols=42 Identities=14% Similarity=0.381 Sum_probs=32.4
Q ss_pred EEEEcCCCCcChHHHHHHHHHHH-hCCCeEEEEeCCcchhHHH
Q 012744 6 VVVIPNPEQGHVIPLLELSQNLA-KHGLRITFVNSEYNHKRVL 47 (457)
Q Consensus 6 vl~~~~~~~GH~~p~~~la~~L~-~~Gh~Vt~~~~~~~~~~~~ 47 (457)
+++...|+.|=-.-.+.+|...+ +.|+.|.|++-.-....+.
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~ 271 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLI 271 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHH
Confidence 35566788898888999999887 4689999999777655443
No 267
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=61.02 E-value=42 Score=30.17 Aligned_cols=85 Identities=16% Similarity=0.132 Sum_probs=51.4
Q ss_pred HHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcCCCC
Q 012744 27 LAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLLEKRLQVMPGKLEGLIEEIHGREGE 106 (457)
Q Consensus 27 L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 106 (457)
|........++.++.+......+ |++....-...+..+ .....+.++.+.+++ .
T Consensus 145 ~~~~~~~~~v~~h~~~~Y~~~~~---------gl~~~~~~~~~~~~~--------------ps~~~l~~l~~~ik~---~ 198 (256)
T PF01297_consen 145 LAKLPGRPVVVYHDAFQYFAKRY---------GLKVIGVIEISPGEE--------------PSPKDLAELIKLIKE---N 198 (256)
T ss_dssp HTTSSGGEEEEEESTTHHHHHHT---------T-EEEEEESSSSSSS--------------S-HHHHHHHHHHHHH---T
T ss_pred hhcccCCeEEEEChHHHHHHHhc---------CCceeeeeccccccC--------------CCHHHHHHHHHHhhh---c
Confidence 33334467777788888888877 777665431111111 111244555555555 8
Q ss_pred CeeEEEecCCcc--hHHHHHHHcCCceEEEech
Q 012744 107 KTACLIADGAAG--WAIEVAEKMKLRRAVVVIT 137 (457)
Q Consensus 107 ~~D~vv~D~~~~--~~~~~A~~lgiP~v~~~~~ 137 (457)
+..+|+++.... .+..+|+..|+|.+.+.+.
T Consensus 199 ~v~~i~~e~~~~~~~~~~la~~~g~~vv~ld~l 231 (256)
T PF01297_consen 199 KVKCIFTEPQFSSKLAEALAKETGVKVVYLDPL 231 (256)
T ss_dssp T-SEEEEETTS-THHHHHHHHCCT-EEEESSTT
T ss_pred CCcEEEecCCCChHHHHHHHHHcCCcEEEeCCC
Confidence 899999998766 5688899999999886444
No 268
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=60.97 E-value=55 Score=32.02 Aligned_cols=39 Identities=10% Similarity=0.203 Sum_probs=32.8
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 012744 6 VVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHK 44 (457)
Q Consensus 6 vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~ 44 (457)
|+|+-.++.|=-.-+..||..|.++|++|.+++...+..
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~ 141 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA 141 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch
Confidence 455556677999999999999999999999999877654
No 269
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=60.88 E-value=75 Score=29.08 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=33.0
Q ss_pred CCCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHh
Q 012744 2 SSPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLE 48 (457)
Q Consensus 2 ~~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~ 48 (457)
..++|+++-.|..|. .+|+.|+++||.|.++......+....
T Consensus 2 ~~~~v~IvG~GliG~-----s~a~~l~~~g~~v~i~g~d~~~~~~~~ 43 (279)
T COG0287 2 ASMKVGIVGLGLMGG-----SLARALKEAGLVVRIIGRDRSAATLKA 43 (279)
T ss_pred CCcEEEEECCchHHH-----HHHHHHHHcCCeEEEEeecCcHHHHHH
Confidence 356788888887775 479999999999999988777655544
No 270
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=60.86 E-value=87 Score=28.36 Aligned_cols=77 Identities=13% Similarity=0.078 Sum_probs=50.6
Q ss_pred eEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEE
Q 012744 33 RITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLLEKRLQVMPGKLEGLIEEIHGREGEKTACLI 112 (457)
Q Consensus 33 ~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv 112 (457)
...+.+++.+....+.+ |++...+.. +.. ....+.+.++++.+++ .+..+|+
T Consensus 171 ~~~v~~H~af~Y~~~~y---------gl~~~~~~~--~~~--------------eps~~~l~~l~~~ik~---~~v~~if 222 (266)
T cd01018 171 RAFMVYHPAWGYFARDY---------GLTQIPIEE--EGK--------------EPSPADLKRLIDLAKE---KGVRVVF 222 (266)
T ss_pred CeEEEECchhHHHHHHc---------CCEEEecCC--CCC--------------CCCHHHHHHHHHHHHH---cCCCEEE
Confidence 44556667777777776 676655421 111 1122355566666666 7899999
Q ss_pred ecCCcc--hHHHHHHHcCCceEEEech
Q 012744 113 ADGAAG--WAIEVAEKMKLRRAVVVIT 137 (457)
Q Consensus 113 ~D~~~~--~~~~~A~~lgiP~v~~~~~ 137 (457)
++.... .+-.+|+..|+|.+.+.+.
T Consensus 223 ~e~~~~~~~~~~la~~~g~~v~~ld~~ 249 (266)
T cd01018 223 VQPQFSTKSAEAIAREIGAKVVTIDPL 249 (266)
T ss_pred EcCCCCcHHHHHHHHHcCCeEEEeCCc
Confidence 998766 6678999999999887644
No 271
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=60.84 E-value=73 Score=24.35 Aligned_cols=85 Identities=14% Similarity=0.165 Sum_probs=51.1
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHHHHHHHhcchHHHH
Q 012744 16 HVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLLEKRLQVMPGKLEG 95 (457)
Q Consensus 16 H~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (457)
+-.-++.+|+.|.+.|+++. .++.....+... |+....+...-.. ..+.+.+
T Consensus 10 ~K~~~~~~a~~l~~~G~~i~--AT~gTa~~L~~~---------Gi~~~~v~~~~~~-----------------g~~~i~~ 61 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPLF--ATGGTSRVLADA---------GIPVRAVSKRHED-----------------GEPTVDA 61 (112)
T ss_pred cHHHHHHHHHHHHHCCCEEE--ECcHHHHHHHHc---------CCceEEEEecCCC-----------------CCcHHHH
Confidence 44568899999999999884 455677777765 6665554211110 1122223
Q ss_pred HHHHHhcCCCCCeeEEEecC--Cc--------chHHHHHHHcCCceEE
Q 012744 96 LIEEIHGREGEKTACLIADG--AA--------GWAIEVAEKMKLRRAV 133 (457)
Q Consensus 96 ~~~~l~~~~~~~~D~vv~D~--~~--------~~~~~~A~~lgiP~v~ 133 (457)
++.. . .++|+||.-+ .. +....+|-..+||++.
T Consensus 62 ~i~~---~--g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 62 AIAE---K--GKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred HHhC---C--CCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 3221 0 3788888732 22 2345568888999987
No 272
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=60.51 E-value=13 Score=32.99 Aligned_cols=37 Identities=8% Similarity=0.167 Sum_probs=26.8
Q ss_pred CEEEEEcCCCCcChHH------------HHHHHHHHHhCCCeEEEEeCC
Q 012744 4 PHVVVIPNPEQGHVIP------------LLELSQNLAKHGLRITFVNSE 40 (457)
Q Consensus 4 ~~vl~~~~~~~GH~~p------------~~~la~~L~~~Gh~Vt~~~~~ 40 (457)
|||++...|+.-.+.| =.+||++|.++||+|+++..+
T Consensus 1 ~~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred CEEEEcCCCcccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEECc
Confidence 4666666666555554 257889999999999999753
No 273
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=60.27 E-value=73 Score=31.81 Aligned_cols=26 Identities=15% Similarity=0.168 Sum_probs=22.3
Q ss_pred CCeeEEEecCCcchHHHHHHHcCCceEEE
Q 012744 106 EKTACLIADGAAGWAIEVAEKMKLRRAVV 134 (457)
Q Consensus 106 ~~~D~vv~D~~~~~~~~~A~~lgiP~v~~ 134 (457)
.+||++|.. .....+|+++|||++..
T Consensus 392 ~~pDliig~---s~~~~~a~k~giP~~~~ 417 (475)
T PRK14478 392 AKADIMLSG---GRSQFIALKAGMPWLDI 417 (475)
T ss_pred cCCCEEEec---CchhhhhhhcCCCEEEc
Confidence 789999997 56778899999999853
No 274
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=60.18 E-value=51 Score=32.80 Aligned_cols=98 Identities=11% Similarity=0.103 Sum_probs=54.7
Q ss_pred CEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCC--CCCCC----CCcch
Q 012744 4 PHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPD--GMEPW----DDRSD 77 (457)
Q Consensus 4 ~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~ 77 (457)
++-+|++..- -.-++.+|+.|.+.|+++. ++..+.+.+.+. |+....+.+ +.|+. -++-+
T Consensus 4 ~~~aLISVsD---K~~iv~lAk~L~~lGfeI~--AT~GTak~L~e~---------GI~v~~V~k~TgfpEil~GRVKTLH 69 (513)
T PRK00881 4 IKRALISVSD---KTGIVEFAKALVELGVEIL--STGGTAKLLAEA---------GIPVTEVSDVTGFPEILDGRVKTLH 69 (513)
T ss_pred cCEEEEEEeC---cccHHHHHHHHHHCCCEEE--EcchHHHHHHHC---------CCeeEEeecccCCchhcCCccccCC
Confidence 3334444443 3458899999999999984 566778888877 777666642 33332 23444
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcch
Q 012744 78 MRKLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAGW 119 (457)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~ 119 (457)
+.-+--.+...-.+.- ++.+.+-.-...|+||++ ++++
T Consensus 70 P~IhgGiLa~r~~~~h---~~~l~~~~i~~IDlVvvN-LYPF 107 (513)
T PRK00881 70 PKIHGGILARRDNPEH---VAALEEHGIEPIDLVVVN-LYPF 107 (513)
T ss_pred chhhhhhccCCCCHHH---HHHHHHcCCCceeEEEEe-CcCh
Confidence 4433333322222222 222222222567999998 4443
No 275
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=59.74 E-value=1.1e+02 Score=30.45 Aligned_cols=26 Identities=27% Similarity=0.152 Sum_probs=21.7
Q ss_pred CCeeEEEecCCcchHHHHHHHcCCceEEE
Q 012744 106 EKTACLIADGAAGWAIEVAEKMKLRRAVV 134 (457)
Q Consensus 106 ~~~D~vv~D~~~~~~~~~A~~lgiP~v~~ 134 (457)
.+||++|.. .....+|+++|||++.+
T Consensus 394 ~~pDl~ig~---~~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 394 YKADLLIAG---GKERYTALKLGIPFCDI 419 (456)
T ss_pred cCCCEEEEc---cchHHHHHhcCCCEEEc
Confidence 789999986 34577788999999885
No 276
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=59.65 E-value=1.3e+02 Score=31.01 Aligned_cols=86 Identities=13% Similarity=0.134 Sum_probs=51.2
Q ss_pred ceeeccCcchhhhhhh---cCCceecccccc---chhhhHHhhhhhh--ceeEE-eeccCCCccCHHHHHHHHHHHhCCH
Q 012744 348 CFMSHCGWNSTTEGVS---NGVPFLCWPFFA---DQFMNTTYICDVW--KVGLR-LERNQSGIIGREEIKNKVDQVLGDQ 418 (457)
Q Consensus 348 ~~I~HgG~~s~~eal~---~GvP~l~~P~~~---DQ~~na~~v~~~l--G~g~~-l~~~~~~~~~~~~l~~~i~~~l~~~ 418 (457)
.+|.=.|+-.-+-.+. --+|+|.+|... +-.+--.-+.+ + |+.+. +.. ++..++.-++..|-. +.|+
T Consensus 468 v~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~~-~p~g~pv~~v~i--~~~~~aa~~a~~i~~-~~~~ 543 (577)
T PLN02948 468 VIIAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIVQ-MPRGVPVATVAI--GNATNAGLLAVRMLG-ASDP 543 (577)
T ss_pred EEEEEcCccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHhc-CCCCCeEEEEec--CChHHHHHHHHHHHh-cCCH
Confidence 3888888643333332 258999999853 33333233344 4 53221 122 245677777766644 3478
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q 012744 419 NFKARALKLKEKALSSVRE 437 (457)
Q Consensus 419 ~~~~~a~~l~~~~~~~~~~ 437 (457)
+++++.+..++++++.+.+
T Consensus 544 ~~~~~~~~~~~~~~~~~~~ 562 (577)
T PLN02948 544 DLLDKMEAYQEDMRDMVLE 562 (577)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999998875433
No 277
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=59.58 E-value=35 Score=31.53 Aligned_cols=55 Identities=20% Similarity=0.189 Sum_probs=38.9
Q ss_pred cCCCccceeeccCcchhhhhhh----cCCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCC
Q 012744 342 THPSISCFMSHCGWNSTTEGVS----NGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGD 417 (457)
Q Consensus 342 ~~~~~~~~I~HgG~~s~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~ 417 (457)
..+++ +|+=||-||+.+++. .++|++.+... .+|.. ..++.+++.++|.+++++
T Consensus 61 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G--------------~lGFl------~~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 61 EVCDL--VIVVGGDGSLLGAARALARHNVPVLGINRG--------------RLGFL------TDIRPDELEFKLAEVLDG 118 (295)
T ss_pred cCCCE--EEEEeCcHHHHHHHHHhcCCCCCEEEEeCC--------------ccccc------ccCCHHHHHHHHHHHHcC
Confidence 34666 999999999999865 36787766331 23322 236789999999999865
Q ss_pred H
Q 012744 418 Q 418 (457)
Q Consensus 418 ~ 418 (457)
.
T Consensus 119 ~ 119 (295)
T PRK01231 119 H 119 (295)
T ss_pred C
Confidence 4
No 278
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=59.55 E-value=71 Score=28.27 Aligned_cols=42 Identities=24% Similarity=0.508 Sum_probs=31.4
Q ss_pred EEEcCCCCcChHHHHHHHHHHHhC-CCeEEEEeCCcchhHHHh
Q 012744 7 VVIPNPEQGHVIPLLELSQNLAKH-GLRITFVNSEYNHKRVLE 48 (457)
Q Consensus 7 l~~~~~~~GH~~p~~~la~~L~~~-Gh~Vt~~~~~~~~~~~~~ 48 (457)
++...|+.|=-.-+..++..++.. |+.|.|++.......+..
T Consensus 17 lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~ 59 (242)
T cd00984 17 IIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQ 59 (242)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHH
Confidence 444455668778888888888777 999999998776655543
No 279
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=59.42 E-value=43 Score=31.34 Aligned_cols=34 Identities=24% Similarity=0.254 Sum_probs=25.0
Q ss_pred CCeeEE-EecCCcc-hHHHHHHHcCCceEEEechhh
Q 012744 106 EKTACL-IADGAAG-WAIEVAEKMKLRRAVVVITSA 139 (457)
Q Consensus 106 ~~~D~v-v~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 139 (457)
..||+| |.|...- .+..=|.++|||.|.+..+..
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~ 186 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNC 186 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCC
Confidence 468875 4555444 777779999999999876654
No 280
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=59.40 E-value=12 Score=31.74 Aligned_cols=40 Identities=13% Similarity=0.084 Sum_probs=32.6
Q ss_pred CEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcch
Q 012744 4 PHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNH 43 (457)
Q Consensus 4 ~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~ 43 (457)
+||++--.|+.|=+.-...+.++|.++|++|+++.++...
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~ 40 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQ 40 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHH
Confidence 3677777777777777779999999999999999987654
No 281
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=59.35 E-value=13 Score=33.68 Aligned_cols=53 Identities=19% Similarity=0.136 Sum_probs=37.5
Q ss_pred CCccceeeccCcchhhhhhh------cCCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCC
Q 012744 344 PSISCFMSHCGWNSTTEGVS------NGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGD 417 (457)
Q Consensus 344 ~~~~~~I~HgG~~s~~eal~------~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~ 417 (457)
+++ +|+-||-||+..++. .++|++.+-. . .+|..- .++.+++.+++.+++++
T Consensus 36 ~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN~-------------G-~lGFL~------~~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 36 PDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVHT-------------G-HLGFYT------DWRPFEVDKLVIALAKD 93 (265)
T ss_pred CCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEeC-------------C-Cceecc------cCCHHHHHHHHHHHHcC
Confidence 566 999999999999976 4888887622 1 233322 25677888888888865
Q ss_pred H
Q 012744 418 Q 418 (457)
Q Consensus 418 ~ 418 (457)
+
T Consensus 94 ~ 94 (265)
T PRK04885 94 P 94 (265)
T ss_pred C
Confidence 3
No 282
>PRK05920 aromatic acid decarboxylase; Validated
Probab=59.06 E-value=17 Score=31.49 Aligned_cols=46 Identities=17% Similarity=0.150 Sum_probs=35.6
Q ss_pred CCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhh
Q 012744 3 SPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLES 49 (457)
Q Consensus 3 ~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~ 49 (457)
.+||++--.|+.+= .=...+.+.|.+.||+|.++.+......+...
T Consensus 3 ~krIllgITGsiaa-~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~~~ 48 (204)
T PRK05920 3 MKRIVLAITGASGA-IYGVRLLECLLAADYEVHLVISKAAQKVLATE 48 (204)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEEEChhHHHHHHHH
Confidence 35676665555444 68899999999999999999998877777643
No 283
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=58.90 E-value=17 Score=30.94 Aligned_cols=45 Identities=18% Similarity=0.147 Sum_probs=35.9
Q ss_pred CEEEEEcCCCCcChHHHHHHHHHHHh-CCCeEEEEeCCcchhHHHhh
Q 012744 4 PHVVVIPNPEQGHVIPLLELSQNLAK-HGLRITFVNSEYNHKRVLES 49 (457)
Q Consensus 4 ~~vl~~~~~~~GH~~p~~~la~~L~~-~Gh~Vt~~~~~~~~~~~~~~ 49 (457)
+||++-..|+.| ..=...++++|.+ .||+|.++.++.....+...
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~~~ 47 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLAHE 47 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHHHH
Confidence 367776666666 6668999999999 59999999998888777654
No 284
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=58.87 E-value=1e+02 Score=30.50 Aligned_cols=107 Identities=13% Similarity=0.148 Sum_probs=59.6
Q ss_pred EEEEcCCC-CcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHHHH
Q 012744 6 VVVIPNPE-QGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLLEK 84 (457)
Q Consensus 6 vl~~~~~~-~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (457)
+++....+ .|=-.-...|++.|+++|++|..+-+... .+... + +..-.+.+... .. .
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g~d--~~D~~----------~--~~~~~g~~~~~-ld-------~ 59 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVGPD--YIDPM----------F--HTQATGRPSRN-LD-------S 59 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccCCC--CCCHH----------H--HHHHhCCchhh-CC-------c
Confidence 44443443 37788899999999999999999865321 00000 0 00000000000 00 0
Q ss_pred HHHhcchHHHHHHHHHhcCCCCCeeEEEecCCc------------chHHHHHHHcCCceEEEechhh
Q 012744 85 RLQVMPGKLEGLIEEIHGREGEKTACLIADGAA------------GWAIEVAEKMKLRRAVVVITSA 139 (457)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~------------~~~~~~A~~lgiP~v~~~~~~~ 139 (457)
+. .-...+.+.+..+. .+.|++|++... .....+|+.++.|++.+.....
T Consensus 60 ~~-~~~~~i~~~~~~~~----~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~~ 121 (449)
T TIGR00379 60 FF-MSEAQIQECFHRHS----KGTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQR 121 (449)
T ss_pred cc-CCHHHHHHHHHHhc----ccCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCch
Confidence 00 11223444444432 467999977651 2477999999999999987653
No 285
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=58.84 E-value=1.7e+02 Score=28.20 Aligned_cols=41 Identities=24% Similarity=0.474 Sum_probs=30.9
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHH
Q 012744 6 VVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRV 46 (457)
Q Consensus 6 vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~ 46 (457)
+++.-.|+.|=-.=++.+|..++++|.+|.+++.....+.+
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi 125 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQI 125 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHH
Confidence 34455567788888889999999999999999876654443
No 286
>PRK05973 replicative DNA helicase; Provisional
Probab=58.63 E-value=85 Score=27.92 Aligned_cols=43 Identities=28% Similarity=0.390 Sum_probs=34.3
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHh
Q 012744 6 VVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLE 48 (457)
Q Consensus 6 vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~ 48 (457)
+++...|+.|=-.=.+.++...+++|+.|.|++.......+..
T Consensus 67 ~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~ 109 (237)
T PRK05973 67 VLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRD 109 (237)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHH
Confidence 4566677889888899999988889999999998776555443
No 287
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=58.47 E-value=17 Score=35.23 Aligned_cols=48 Identities=23% Similarity=0.209 Sum_probs=38.1
Q ss_pred CCCCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhh
Q 012744 1 MSSPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLES 49 (457)
Q Consensus 1 m~~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~ 49 (457)
|+++||++...|+. ...-...+.+.|.++|++|.++.++....++...
T Consensus 4 l~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~~ 51 (399)
T PRK05579 4 LAGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFVTPL 51 (399)
T ss_pred CCCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHHhHH
Confidence 34678888777766 4557789999999999999999998877777654
No 288
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=57.33 E-value=15 Score=32.94 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=24.5
Q ss_pred EEEEEcCC------CCcChHHHHHHHHHHHhCCCeEEEEeCCc
Q 012744 5 HVVVIPNP------EQGHVIPLLELSQNLAKHGLRITFVNSEY 41 (457)
Q Consensus 5 ~vl~~~~~------~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~ 41 (457)
||++++.- +.|=-.-+-.|+++|+++||+|+++++..
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 46666532 22333457789999999999999999866
No 289
>PRK08760 replicative DNA helicase; Provisional
Probab=57.20 E-value=61 Score=32.35 Aligned_cols=42 Identities=12% Similarity=0.231 Sum_probs=32.2
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHh-CCCeEEEEeCCcchhHHH
Q 012744 6 VVVIPNPEQGHVIPLLELSQNLAK-HGLRITFVNSEYNHKRVL 47 (457)
Q Consensus 6 vl~~~~~~~GH~~p~~~la~~L~~-~Gh~Vt~~~~~~~~~~~~ 47 (457)
+++...|+.|=-.-.+.+|...+. .|+.|.|++.....+.+.
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~ 274 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLA 274 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHH
Confidence 455667788999999999988864 599999998776655443
No 290
>PRK11519 tyrosine kinase; Provisional
Probab=56.97 E-value=2.6e+02 Score=29.76 Aligned_cols=117 Identities=14% Similarity=0.165 Sum_probs=66.2
Q ss_pred CCEEEEEcC--CCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhh-cCC-------------------CCCCCCe
Q 012744 3 SPHVVVIPN--PEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESL-EGK-------------------NYIGEQI 60 (457)
Q Consensus 3 ~~~vl~~~~--~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~-~~~-------------------~~~~~~~ 60 (457)
+.|+++++. |+.|=-.-...||..|+..|++|.++-.......+.... ... ....+++
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~~l 604 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIANF 604 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcCCE
Confidence 346666554 566888889999999999999999996543322221110 000 0011233
Q ss_pred EEEecCCCCCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcc----hHHHHHHHcCCceEEEe
Q 012744 61 HLVSIPDGMEPWDDRSDMRKLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAG----WAIEVAEKMKLRRAVVV 135 (457)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~----~~~~~A~~lgiP~v~~~ 135 (457)
.+.+. +. ...+..+.+. ...+.++++.++ .++|+||.|.-.. -+..+++..+..++++-
T Consensus 605 ~~lp~--g~----~~~~~~ell~------s~~~~~ll~~l~----~~yD~ViiDtpP~~~v~Da~~l~~~~d~~l~Vvr 667 (719)
T PRK11519 605 DLIPR--GQ----VPPNPSELLM------SERFAELVNWAS----KNYDLVLIDTPPILAVTDAAIVGRHVGTTLMVAR 667 (719)
T ss_pred EEEeC--CC----CCCCHHHHhh------HHHHHHHHHHHH----hcCCEEEEeCCCcccchHHHHHHHHCCeEEEEEe
Confidence 33221 11 1122222221 235677777776 4799999995432 24567777776666654
No 291
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=56.87 E-value=47 Score=32.90 Aligned_cols=87 Identities=10% Similarity=0.124 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCC--CCCCC----CCcchHHHHHHHHHHhcch
Q 012744 18 IPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPD--GMEPW----DDRSDMRKLLEKRLQVMPG 91 (457)
Q Consensus 18 ~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~ 91 (457)
.-+..+|+.|.+.|+++. ++..+.+.++.. |+....+.+ +.|+. -++-++.-.--.+...-.
T Consensus 11 ~~iv~lAk~L~~lGfeIi--ATgGTak~L~e~---------GI~v~~Vsk~TgfPEil~GRVKTLHP~IhgGiLarr~~- 78 (511)
T TIGR00355 11 TGIVEFAQGLVERGVELL--STGGTAKLLAEA---------GVPVTEVSDYTGFPEMMDGRVKTLHPKVHGGILARRGD- 78 (511)
T ss_pred ccHHHHHHHHHHCCCEEE--EechHHHHHHHC---------CCeEEEeecccCCchhhCCccccCCchhhhhhhcCCCc-
Confidence 447899999999999984 666778888877 777766642 33332 244444444444332222
Q ss_pred HHHHHHHHHhcCCCCCeeEEEecCCcchH
Q 012744 92 KLEGLIEEIHGREGEKTACLIADGAAGWA 120 (457)
Q Consensus 92 ~~~~~~~~l~~~~~~~~D~vv~D~~~~~~ 120 (457)
++ ++.+.+-.-...|+||+. ++++-
T Consensus 79 --~~-~~~l~~~~I~~IDlVvvN-LYPF~ 103 (511)
T TIGR00355 79 --DD-DADLEEHGIEPIDLVVVN-LYPFK 103 (511)
T ss_pred --hH-HHHHHHcCCCceeEEEEe-ccChH
Confidence 23 444444332567999999 45443
No 292
>PRK14098 glycogen synthase; Provisional
Probab=56.67 E-value=18 Score=36.32 Aligned_cols=38 Identities=13% Similarity=0.210 Sum_probs=30.1
Q ss_pred CEEEEEcCC------CCcChHHHHHHHHHHHhCCCeEEEEeCCc
Q 012744 4 PHVVVIPNP------EQGHVIPLLELSQNLAKHGLRITFVNSEY 41 (457)
Q Consensus 4 ~~vl~~~~~------~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~ 41 (457)
|||+|++.- +.|=-.-+-+|.++|+++||+|.++.+.+
T Consensus 6 ~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 6 FKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred cEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 789998743 33555567889999999999999999855
No 293
>PRK05636 replicative DNA helicase; Provisional
Probab=56.51 E-value=57 Score=32.81 Aligned_cols=40 Identities=18% Similarity=0.308 Sum_probs=29.5
Q ss_pred EEEcCCCCcChHHHHHHHHHHH-hCCCeEEEEeCCcchhHH
Q 012744 7 VVIPNPEQGHVIPLLELSQNLA-KHGLRITFVNSEYNHKRV 46 (457)
Q Consensus 7 l~~~~~~~GH~~p~~~la~~L~-~~Gh~Vt~~~~~~~~~~~ 46 (457)
++...|+.|=-.-.+.+|...+ ++|..|.|++..-....+
T Consensus 269 iiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql 309 (505)
T PRK05636 269 IVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEI 309 (505)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHH
Confidence 4556777788877888888776 468899999876665444
No 294
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=56.50 E-value=17 Score=35.00 Aligned_cols=48 Identities=13% Similarity=0.202 Sum_probs=38.2
Q ss_pred CCCCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhh
Q 012744 1 MSSPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLES 49 (457)
Q Consensus 1 m~~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~ 49 (457)
++++||++...|+.|= .-...+++.|.+.|++|.++.++.....+...
T Consensus 1 l~~k~IllgiTGSiaa-~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~~~ 48 (390)
T TIGR00521 1 LENKKILLGVTGGIAA-YKTVELVRELVRQGAEVKVIMTEAAKKFITPL 48 (390)
T ss_pred CCCCEEEEEEeCHHHH-HHHHHHHHHHHhCCCEEEEEECHhHHHHHHHH
Confidence 4567888877776554 55899999999999999999998877777644
No 295
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=56.29 E-value=1.2e+02 Score=27.70 Aligned_cols=38 Identities=13% Similarity=0.258 Sum_probs=31.1
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012744 5 HVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYN 42 (457)
Q Consensus 5 ~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~ 42 (457)
.++|+..++.|=-.-...||..|+++|++|.++....+
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 34555555669999999999999999999999997765
No 296
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=56.18 E-value=12 Score=31.47 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=20.8
Q ss_pred cCCCccceeeccCcchhhhhhhcCCceeccccc
Q 012744 342 THPSISCFMSHCGWNSTTEGVSNGVPFLCWPFF 374 (457)
Q Consensus 342 ~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~ 374 (457)
..+++ +|++||......... ++|+|-+|..
T Consensus 33 ~g~dV--iIsRG~ta~~lr~~~-~iPVV~I~~s 62 (176)
T PF06506_consen 33 EGADV--IISRGGTAELLRKHV-SIPVVEIPIS 62 (176)
T ss_dssp TT-SE--EEEEHHHHHHHHCC--SS-EEEE---
T ss_pred cCCeE--EEECCHHHHHHHHhC-CCCEEEECCC
Confidence 33555 999999999998877 9999999974
No 297
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=56.11 E-value=20 Score=32.29 Aligned_cols=32 Identities=9% Similarity=0.059 Sum_probs=25.3
Q ss_pred CCeeEEEecCCc-----c-hHHHHHHHcCCceEEEech
Q 012744 106 EKTACLIADGAA-----G-WAIEVAEKMKLRRAVVVIT 137 (457)
Q Consensus 106 ~~~D~vv~D~~~-----~-~~~~~A~~lgiP~v~~~~~ 137 (457)
..||+|++-..+ . .+..+|+.||+|++.+...
T Consensus 111 ~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 111 AGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred hCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 569999984433 2 7888999999999997654
No 298
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=55.78 E-value=11 Score=37.91 Aligned_cols=100 Identities=19% Similarity=0.167 Sum_probs=51.9
Q ss_pred hcCCceee---cCC---------CchhhccCCCccceeec---cCcchhhhhhhcCCceecccccc-chhhhH---Hhhh
Q 012744 325 VAARGQMI---SWS---------PQQKVLTHPSISCFMSH---CGWNSTTEGVSNGVPFLCWPFFA-DQFMNT---TYIC 385 (457)
Q Consensus 325 ~~~nv~~~---~~~---------pq~~ll~~~~~~~~I~H---gG~~s~~eal~~GvP~l~~P~~~-DQ~~na---~~v~ 385 (457)
..++|+++ .|+ ++.+++.-|+++.|-+- =| -|-+||+++|||.|.-=+.+ -++.+- .. .
T Consensus 439 ~~drVKVIF~P~yL~~~dgif~l~Y~dfv~GcdLgvFPSYYEPWG-YTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~-~ 516 (633)
T PF05693_consen 439 PEDRVKVIFHPEYLSGTDGIFNLDYYDFVRGCDLGVFPSYYEPWG-YTPLECTAFGVPSITTNLSGFGCWMQEHIEDP-E 516 (633)
T ss_dssp TT-SEEEEE--S---TTSSSS-S-HHHHHHHSSEEEE--SSBSS--HHHHHHHHTT--EEEETTBHHHHHHHTTS-HH-G
T ss_pred CCCceEEEEeeccccCCCCCCCCCHHHHhccCceeeecccccccc-CChHHHhhcCCceeeccchhHHHHHHHhhccC-c
Confidence 45777754 443 56678888888444431 12 38999999999999877632 222221 11 2
Q ss_pred hhhceeEEeeccCCCccCHHHHHHHHHHHhCC-----H----HHHHHHHHHHHHH
Q 012744 386 DVWKVGLRLERNQSGIIGREEIKNKVDQVLGD-----Q----NFKARALKLKEKA 431 (457)
Q Consensus 386 ~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~-----~----~~~~~a~~l~~~~ 431 (457)
. .|+-+.-+. .-+.++..+.|.+.|.+ . ..|++|+++++.+
T Consensus 517 ~-~GV~VvdR~----~~n~~e~v~~la~~l~~f~~~~~rqri~~Rn~ae~LS~~~ 566 (633)
T PF05693_consen 517 E-YGVYVVDRR----DKNYDESVNQLADFLYKFCQLSRRQRIIQRNRAERLSDLA 566 (633)
T ss_dssp G-GTEEEE-SS----SS-HHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHGGGG
T ss_pred C-CcEEEEeCC----CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 3 366655443 34566666666655532 1 3567777766654
No 299
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=55.78 E-value=1.1e+02 Score=31.06 Aligned_cols=108 Identities=11% Similarity=0.142 Sum_probs=65.3
Q ss_pred cChHHHHHHH-HHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCC-CC------------CCC-------C
Q 012744 15 GHVIPLLELS-QNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPD-GM------------EPW-------D 73 (457)
Q Consensus 15 GH~~p~~~la-~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------------~~~-------~ 73 (457)
|++.-.+.+| +.+...|++|.+.-. .+...+++.. .+..+.++- ++ ... .
T Consensus 37 ~~~~~~~~~a~~~~~~~~~dviIsrG-~ta~~i~~~~--------~iPVv~i~~s~~Dil~al~~a~~~~~~ia~vg~~~ 107 (526)
T TIGR02329 37 LGFEDAVREIRQRLGAERCDVVVAGG-SNGAYLKSRL--------SLPVIVIKPTGFDVMQALARARRIASSIGVVTHQD 107 (526)
T ss_pred ccHHHHHHHHHHHHHhCCCcEEEECc-hHHHHHHHhC--------CCCEEEecCChhhHHHHHHHHHhcCCcEEEEecCc
Confidence 6667777787 446667888876554 4555666542 444555441 11 000 0
Q ss_pred CcchHHHHHHHHHHh-------cchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEEEech
Q 012744 74 DRSDMRKLLEKRLQV-------MPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAVVVIT 137 (457)
Q Consensus 74 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~ 137 (457)
.......+...+--. ....++..+..+++ .++++||.|. .+..+|+++|++.+.+.+.
T Consensus 108 ~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~---~G~~~viG~~---~~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 108 TPPALRRFQAAFNLDIVQRSYVTEEDARSCVNDLRA---RGIGAVVGAG---LITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred ccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHH---CCCCEEECCh---HHHHHHHHcCCceEEEecH
Confidence 111222222222111 13467788888888 7899999995 5678899999999998775
No 300
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=55.77 E-value=46 Score=32.25 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=36.3
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHh
Q 012744 5 HVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLE 48 (457)
Q Consensus 5 ~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~ 48 (457)
.|+++-.=+.|-...+-.||+.|.++|+.|-+++...+++....
T Consensus 102 vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~e 145 (451)
T COG0541 102 VILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIE 145 (451)
T ss_pred EEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHH
Confidence 45556666889999999999999999999999998887665543
No 301
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=55.14 E-value=15 Score=31.09 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=31.3
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHh
Q 012744 6 VVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLE 48 (457)
Q Consensus 6 vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~ 48 (457)
|++-..|+.|-+. ...+.+.|.++|++|.++.++.....+..
T Consensus 2 illgvtGsiaa~k-a~~lir~L~~~g~~V~vv~T~~A~~fv~~ 43 (181)
T TIGR00421 2 IVVAMTGASGVIY-GIRLLEVLKEAGVEVHLVISDWAKETIKY 43 (181)
T ss_pred EEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECccHHHHHHH
Confidence 4444444445444 48899999999999999999888777654
No 302
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=55.02 E-value=89 Score=27.67 Aligned_cols=100 Identities=12% Similarity=0.189 Sum_probs=52.2
Q ss_pred CCEEEEEcCCCCc--ChH--HHHHHHHHHHhCCCeEEEEeCCcch--hHHHhhhcCCCCCCCCeE--EEecCCCCCCCCC
Q 012744 3 SPHVVVIPNPEQG--HVI--PLLELSQNLAKHGLRITFVNSEYNH--KRVLESLEGKNYIGEQIH--LVSIPDGMEPWDD 74 (457)
Q Consensus 3 ~~~vl~~~~~~~G--H~~--p~~~la~~L~~~Gh~Vt~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 74 (457)
+..|+|.+..+.. .+- -+..|++.|.++|.+|.++.++... +...... .+.. ...+..
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~-------~~~~~~~~~~~~------- 170 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIA-------AGLQNPVINLAG------- 170 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHH-------TTHTTTTEEETT-------
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHH-------HhcccceEeecC-------
Confidence 3456666666552 222 2689999999999899888887772 2222221 0111 111110
Q ss_pred cchHHHHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEEEechh
Q 012744 75 RSDMRKLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAVVVITS 138 (457)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~ 138 (457)
...+.++...+. .-|++|+-. .....+|..+|+|.+.++...
T Consensus 171 ---------------~~~l~e~~ali~-----~a~~~I~~D--tg~~HlA~a~~~p~v~lfg~t 212 (247)
T PF01075_consen 171 ---------------KTSLRELAALIS-----RADLVIGND--TGPMHLAAALGTPTVALFGPT 212 (247)
T ss_dssp ---------------TS-HHHHHHHHH-----TSSEEEEES--SHHHHHHHHTT--EEEEESSS
T ss_pred ---------------CCCHHHHHHHHh-----cCCEEEecC--ChHHHHHHHHhCCEEEEecCC
Confidence 113344444442 358877754 467889999999999987543
No 303
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=54.66 E-value=27 Score=28.70 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=24.7
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHhhcCC
Q 012744 271 VIYVAFGSHTVLEQNQFQELALGLEICNR 299 (457)
Q Consensus 271 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~ 299 (457)
.+|+++||....+...++..+.++.+.+.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~ 31 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALAD 31 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCC
Confidence 69999999877777778999999988775
No 304
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=54.55 E-value=1.2e+02 Score=27.97 Aligned_cols=103 Identities=16% Similarity=0.087 Sum_probs=56.4
Q ss_pred CCEEEEEcCCCCcChHHHHHHHHHHHhC--CCeEEEEeCCc--chhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchH
Q 012744 3 SPHVVVIPNPEQGHVIPLLELSQNLAKH--GLRITFVNSEY--NHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDM 78 (457)
Q Consensus 3 ~~~vl~~~~~~~GH~~p~~~la~~L~~~--Gh~Vt~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (457)
++|++++..|..+.+. +|.++.... +++|.++.+.. ......+. |+.+..++.....
T Consensus 89 ~~ri~vl~Sg~gsnl~---al~~~~~~~~~~~~i~~visn~~~~~~lA~~~---------gIp~~~~~~~~~~------- 149 (286)
T PRK06027 89 RKRVVILVSKEDHCLG---DLLWRWRSGELPVEIAAVISNHDDLRSLVERF---------GIPFHHVPVTKET------- 149 (286)
T ss_pred CcEEEEEEcCCCCCHH---HHHHHHHcCCCCcEEEEEEEcChhHHHHHHHh---------CCCEEEeccCccc-------
Confidence 6799999888855443 444444432 57887776533 23333333 7777776532100
Q ss_pred HHHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcc-hHHHHHHHcCCceEEEech
Q 012744 79 RKLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAG-WAIEVAEKMKLRRAVVVIT 137 (457)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~-~~~~~A~~lgiP~v~~~~~ 137 (457)
.......+.++++. .++|+||.-.+.. ....+-+.+.-.++-++++
T Consensus 150 -------~~~~~~~~~~~l~~------~~~Dlivlagy~~il~~~~l~~~~~~iiNiHpS 196 (286)
T PRK06027 150 -------KAEAEARLLELIDE------YQPDLVVLARYMQILSPDFVARFPGRIINIHHS 196 (286)
T ss_pred -------cchhHHHHHHHHHH------hCCCEEEEecchhhcCHHHHhhccCCceecCcc
Confidence 01111223344444 8999998886554 4444555555556665544
No 305
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=54.54 E-value=49 Score=25.89 Aligned_cols=21 Identities=24% Similarity=0.167 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhCCCeEEEEeC
Q 012744 19 PLLELSQNLAKHGLRITFVNS 39 (457)
Q Consensus 19 p~~~la~~L~~~Gh~Vt~~~~ 39 (457)
-+-.+...|.++|++|++++-
T Consensus 13 ~~gg~i~~~~~~g~~v~vv~~ 33 (128)
T PF02585_consen 13 GCGGTIAKLAEAGHRVVVVTL 33 (128)
T ss_dssp HHHHHHHHHHHTT-EEEEEEC
T ss_pred hhHHHHHHHHhcCCeEEEEEe
Confidence 344566778889999999874
No 306
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=54.08 E-value=61 Score=27.60 Aligned_cols=62 Identities=23% Similarity=0.359 Sum_probs=41.1
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCc---chhHHHhhhcCCCCCCCCeEEEecCCC
Q 012744 6 VVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEY---NHKRVLESLEGKNYIGEQIHLVSIPDG 68 (457)
Q Consensus 6 vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (457)
|+|+..++.-|-.-+..++++|++.|..|.+++-.. +.+.++... .+.....+-+++.+|.+
T Consensus 111 vi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~-~~~~~~~~s~~~~~~~~ 175 (187)
T cd01452 111 VAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFI-DAVNGKDGSHLVSVPPG 175 (187)
T ss_pred EEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHH-HHhcCCCCceEEEeCCC
Confidence 677778877777778889999999998888887543 333333322 22233345777777754
No 307
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=53.05 E-value=28 Score=32.22 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=30.9
Q ss_pred CCCCEEEEEcCCCCc-C---hHHHHHHHHHHHhCCCeEEEEeC
Q 012744 1 MSSPHVVVIPNPEQG-H---VIPLLELSQNLAKHGLRITFVNS 39 (457)
Q Consensus 1 m~~~~vl~~~~~~~G-H---~~p~~~la~~L~~~Gh~Vt~~~~ 39 (457)
|+|+||+++..|..+ | +.....++++|.+.||+|.++..
T Consensus 1 ~~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 1 MKNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CCCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 889999998877543 2 34677899999999999988754
No 308
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=53.05 E-value=1.4e+02 Score=25.26 Aligned_cols=137 Identities=10% Similarity=0.050 Sum_probs=68.8
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHhhcCCcEEEEEcCCCCCCCcCCCchhHHHHhcC-CceeecCCC-------chhhcc
Q 012744 271 VIYVAFGSHTVLEQNQFQELALGLEICNRSFLWVVRPDITNDANDAYPEGFRERVAA-RGQMISWSP-------QQKVLT 342 (457)
Q Consensus 271 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-nv~~~~~~p-------q~~ll~ 342 (457)
+++.-.||++.. ....+++.+.+.+..+-++.... ...-+.....+...+ .++...|.+ |-++..
T Consensus 4 Ill~vtGsiaa~---~~~~li~~L~~~g~~V~vv~T~~----A~~fi~~~~l~~l~~~~v~~~~~~~~~~~~~~hi~l~~ 76 (182)
T PRK07313 4 ILLAVSGSIAAY---KAADLTSQLTKRGYQVTVLMTKA----ATKFITPLTLQVLSKNPVHLDVMDEHDPKLMNHIELAK 76 (182)
T ss_pred EEEEEeChHHHH---HHHHHHHHHHHCCCEEEEEEChh----HHHHcCHHHHHHHhCCceEeccccccccCCcccccccc
Confidence 566666765432 23455666666677664444332 111122222222333 233322321 222333
Q ss_pred CCCccceeeccCcchhhhh-------------hhc--CCceeccccc----cch---hhhHHhhhhhhceeEEeecc---
Q 012744 343 HPSISCFMSHCGWNSTTEG-------------VSN--GVPFLCWPFF----ADQ---FMNTTYICDVWKVGLRLERN--- 397 (457)
Q Consensus 343 ~~~~~~~I~HgG~~s~~ea-------------l~~--GvP~l~~P~~----~DQ---~~na~~v~~~lG~g~~l~~~--- 397 (457)
.+|+ .+|.-+-+||+.-. +.. ++|+++.|-. .+. ..|..++.+ +|+=+.-...
T Consensus 77 ~aD~-~vIaPaTantlakiA~GiaDnllt~~~~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~-~G~~vi~p~~g~l 154 (182)
T PRK07313 77 RADL-FLVAPATANTIAKLAHGIADDLVTSVALALPATTPKLIAPAMNTKMYENPATQRNLKTLKE-DGVQEIEPKEGLL 154 (182)
T ss_pred ccCE-EEEeeCCHhHHHHHHccccCcHHHHHHHHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHH-CCCEEECCCCCcc
Confidence 3442 36666666644321 344 9999999963 333 456677777 4765544431
Q ss_pred ------CCCccCHHHHHHHHHHHhC
Q 012744 398 ------QSGIIGREEIKNKVDQVLG 416 (457)
Q Consensus 398 ------~~~~~~~~~l~~~i~~~l~ 416 (457)
...-.+.++|.+.+.+.+.
T Consensus 155 a~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 155 ACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred ccCCccCCCCCCHHHHHHHHHHHhc
Confidence 1123466778777777653
No 309
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=53.03 E-value=16 Score=33.47 Aligned_cols=57 Identities=11% Similarity=0.050 Sum_probs=39.1
Q ss_pred hccCCCccceeeccCcchhhhhhh----cCCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHh
Q 012744 340 VLTHPSISCFMSHCGWNSTTEGVS----NGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVL 415 (457)
Q Consensus 340 ll~~~~~~~~I~HgG~~s~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l 415 (457)
+...+++ +|+-||-||+..++. .++|++.+ |. . .+|.. ..++.+++.+++.+++
T Consensus 61 ~~~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGI--------N~-----G-~lGFL------t~~~~~~~~~~l~~i~ 118 (287)
T PRK14077 61 LFKISDF--LISLGGDGTLISLCRKAAEYDKFVLGI--------HA-----G-HLGFL------TDITVDEAEKFFQAFF 118 (287)
T ss_pred cccCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEE--------eC-----C-CcccC------CcCCHHHHHHHHHHHH
Confidence 3345677 999999999998755 47788766 21 1 23332 2357788888998888
Q ss_pred CCH
Q 012744 416 GDQ 418 (457)
Q Consensus 416 ~~~ 418 (457)
+++
T Consensus 119 ~g~ 121 (287)
T PRK14077 119 QGE 121 (287)
T ss_pred cCC
Confidence 654
No 310
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=53.02 E-value=13 Score=33.90 Aligned_cols=58 Identities=9% Similarity=0.107 Sum_probs=39.5
Q ss_pred hhhccCCCccceeeccCcchhhhhhh----cCCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHH
Q 012744 338 QKVLTHPSISCFMSHCGWNSTTEGVS----NGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQ 413 (457)
Q Consensus 338 ~~ll~~~~~~~~I~HgG~~s~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~ 413 (457)
.++...+++ +|+=||-||+..+++ .++|++.+-. . .+|..- .++.+++.+++.+
T Consensus 37 ~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn~-------------G-~lGFL~------~~~~~~~~~~l~~ 94 (272)
T PRK02231 37 EEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGINR-------------G-NLGFLT------DIDPKNAYEQLEA 94 (272)
T ss_pred HHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeC-------------C-CCcccc------cCCHHHHHHHHHH
Confidence 444445677 999999999998754 3678876621 1 244333 2577888888888
Q ss_pred HhCC
Q 012744 414 VLGD 417 (457)
Q Consensus 414 ~l~~ 417 (457)
++++
T Consensus 95 ~~~~ 98 (272)
T PRK02231 95 CLER 98 (272)
T ss_pred HHhc
Confidence 8873
No 311
>PRK08006 replicative DNA helicase; Provisional
Probab=52.86 E-value=1.1e+02 Score=30.46 Aligned_cols=42 Identities=17% Similarity=0.318 Sum_probs=32.5
Q ss_pred EEEEcCCCCcChHHHHHHHHHHH-hCCCeEEEEeCCcchhHHH
Q 012744 6 VVVIPNPEQGHVIPLLELSQNLA-KHGLRITFVNSEYNHKRVL 47 (457)
Q Consensus 6 vl~~~~~~~GH~~p~~~la~~L~-~~Gh~Vt~~~~~~~~~~~~ 47 (457)
+++-.-|+.|=-.-.+.+|...+ +.|+.|.|++..-..+.+.
T Consensus 227 iiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~ 269 (471)
T PRK08006 227 IIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIM 269 (471)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHH
Confidence 45566788899999999998887 4699999999876655443
No 312
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=52.76 E-value=56 Score=27.07 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=26.8
Q ss_pred CCCCcChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012744 11 NPEQGHVIPLLELSQNLAKHGLRITFVNSEYN 42 (457)
Q Consensus 11 ~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~ 42 (457)
-|+.|=-.-...||..|++.|++|.++-....
T Consensus 8 kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q 39 (169)
T cd02037 8 KGGVGKSTVAVNLALALAKLGYKVGLLDADIY 39 (169)
T ss_pred CCcCChhHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 45668888899999999999999999875443
No 313
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=52.69 E-value=1.2e+02 Score=30.52 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=22.7
Q ss_pred CCeeEEEecCCcchHHHHHHHcCCceEEE
Q 012744 106 EKTACLIADGAAGWAIEVAEKMKLRRAVV 134 (457)
Q Consensus 106 ~~~D~vv~D~~~~~~~~~A~~lgiP~v~~ 134 (457)
.+||++|.+. .+..+|+++|||++.+
T Consensus 436 ~~~DlliG~s---~~k~~a~~~giPlir~ 461 (515)
T TIGR01286 436 EPVDFLIGNS---YGKYIQRDTLVPLIRI 461 (515)
T ss_pred cCCCEEEECc---hHHHHHHHcCCCEEEe
Confidence 7899999884 5688899999999886
No 314
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=52.25 E-value=1.4e+02 Score=24.79 Aligned_cols=27 Identities=11% Similarity=0.126 Sum_probs=22.0
Q ss_pred cceeeccCcc------hhhhhhhcCCceecccc
Q 012744 347 SCFMSHCGWN------STTEGVSNGVPFLCWPF 373 (457)
Q Consensus 347 ~~~I~HgG~~------s~~eal~~GvP~l~~P~ 373 (457)
+++++|+|-| .+.+|...++|+|++.-
T Consensus 65 ~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g 97 (164)
T cd07039 65 GVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAG 97 (164)
T ss_pred EEEEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 3388888854 77899999999999964
No 315
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=51.97 E-value=1.1e+02 Score=30.13 Aligned_cols=40 Identities=15% Similarity=0.261 Sum_probs=32.4
Q ss_pred EEEEcCCCCcChHHHHHHHHHHH-hCCCeEEEEeCCcchhH
Q 012744 6 VVVIPNPEQGHVIPLLELSQNLA-KHGLRITFVNSEYNHKR 45 (457)
Q Consensus 6 vl~~~~~~~GH~~p~~~la~~L~-~~Gh~Vt~~~~~~~~~~ 45 (457)
++|+..++.|=-.-...||..|. ++|++|.+++...+...
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~ 142 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA 142 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH
Confidence 45555667799999999999997 58999999998877654
No 316
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.94 E-value=24 Score=32.60 Aligned_cols=58 Identities=19% Similarity=0.160 Sum_probs=41.1
Q ss_pred hhccCCCccceeeccCcchhhhhhh----cCCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHH
Q 012744 339 KVLTHPSISCFMSHCGWNSTTEGVS----NGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQV 414 (457)
Q Consensus 339 ~ll~~~~~~~~I~HgG~~s~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~ 414 (457)
++...+++ +|+=||-||+..+.+ .++|++.+ |. . .+|..- .++.+++.++|.++
T Consensus 64 ~~~~~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGI--------N~-----G-~lGFL~------~~~~~~~~~~l~~i 121 (296)
T PRK04539 64 ELGQYCDL--VAVLGGDGTFLSVAREIAPRAVPIIGI--------NQ-----G-HLGFLT------QIPREYMTDKLLPV 121 (296)
T ss_pred hcCcCCCE--EEEECCcHHHHHHHHHhcccCCCEEEE--------ec-----C-CCeEee------ccCHHHHHHHHHHH
Confidence 33345677 999999999999864 47888876 21 1 234333 25788999999999
Q ss_pred hCCH
Q 012744 415 LGDQ 418 (457)
Q Consensus 415 l~~~ 418 (457)
+++.
T Consensus 122 ~~g~ 125 (296)
T PRK04539 122 LEGK 125 (296)
T ss_pred HcCC
Confidence 8754
No 317
>PRK11823 DNA repair protein RadA; Provisional
Probab=51.94 E-value=2e+02 Score=28.42 Aligned_cols=41 Identities=24% Similarity=0.430 Sum_probs=32.2
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHH
Q 012744 6 VVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRV 46 (457)
Q Consensus 6 vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~ 46 (457)
+++.-.|+.|=-.=++.++..++++|++|.+++.....+.+
T Consensus 83 ~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi 123 (446)
T PRK11823 83 VLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQI 123 (446)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHH
Confidence 34555667788888899999998889999999987665544
No 318
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=51.87 E-value=1.3e+02 Score=25.24 Aligned_cols=29 Identities=21% Similarity=0.157 Sum_probs=24.9
Q ss_pred CCeeEEEecCCcc---hHHHHHHHcCCceEEE
Q 012744 106 EKTACLIADGAAG---WAIEVAEKMKLRRAVV 134 (457)
Q Consensus 106 ~~~D~vv~D~~~~---~~~~~A~~lgiP~v~~ 134 (457)
.+||+|++-.... .+..+|.++|.|++.=
T Consensus 90 ~~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsd 121 (181)
T cd01985 90 EKPDLILAGATSIGKQLAPRVAALLGVPQISD 121 (181)
T ss_pred hCCCEEEECCcccccCHHHHHHHHhCCCccee
Confidence 6799999987665 7889999999999984
No 319
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=51.74 E-value=10 Score=31.16 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=25.2
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCc
Q 012744 5 HVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEY 41 (457)
Q Consensus 5 ~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~ 41 (457)
||.++-.|.+|+ ++|..|+++||+|++.+...
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 455665555554 78999999999999999875
No 320
>PLN02939 transferase, transferring glycosyl groups
Probab=51.52 E-value=27 Score=37.62 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=31.1
Q ss_pred CCEEEEEcCC------CCcChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012744 3 SPHVVVIPNP------EQGHVIPLLELSQNLAKHGLRITFVNSEYN 42 (457)
Q Consensus 3 ~~~vl~~~~~------~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~ 42 (457)
++||+|++.- +.|=-.-.-+|.++|++.||+|.++++.+.
T Consensus 481 ~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~ 526 (977)
T PLN02939 481 GLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYD 526 (977)
T ss_pred CCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 6899998743 224444577899999999999999998663
No 321
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=51.23 E-value=75 Score=28.36 Aligned_cols=79 Identities=16% Similarity=0.124 Sum_probs=46.9
Q ss_pred HHHHHHHHHhCCCeEEEEeCCcchhH-HHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHHHHHHHhcchHHHHHHH
Q 012744 20 LLELSQNLAKHGLRITFVNSEYNHKR-VLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLLEKRLQVMPGKLEGLIE 98 (457)
Q Consensus 20 ~~~la~~L~~~Gh~Vt~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (457)
...|++.|...++.+++.+....... .... +.. ... + +. -...+.++++
T Consensus 14 ar~la~~L~~~~~~~~~ss~t~~g~~l~~~~---------~~~--~~~-G----------------~l--~~e~l~~~l~ 63 (257)
T COG2099 14 ARALAKKLAAAPVDIILSSLTGYGAKLAEQI---------GPV--RVG-G----------------FL--GAEGLAAFLR 63 (257)
T ss_pred HHHHHHHhhccCccEEEEEcccccccchhcc---------CCe--eec-C----------------cC--CHHHHHHHHH
Confidence 46889999999977777765444322 2222 111 110 0 00 0134556666
Q ss_pred HHhcCCCCCeeEEEecCCcchHH-------HHHHHcCCceEEEe
Q 012744 99 EIHGREGEKTACLIADGAAGWAI-------EVAEKMKLRRAVVV 135 (457)
Q Consensus 99 ~l~~~~~~~~D~vv~D~~~~~~~-------~~A~~lgiP~v~~~ 135 (457)
+ .+.|++ +|...+.+. .+|+..|||++.+-
T Consensus 64 e------~~i~ll-IDATHPyAa~iS~Na~~aake~gipy~r~e 100 (257)
T COG2099 64 E------EGIDLL-IDATHPYAARISQNAARAAKETGIPYLRLE 100 (257)
T ss_pred H------cCCCEE-EECCChHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 6 778865 477776554 46788999999974
No 322
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=51.08 E-value=18 Score=30.48 Aligned_cols=42 Identities=12% Similarity=0.207 Sum_probs=31.4
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHH
Q 012744 5 HVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVL 47 (457)
Q Consensus 5 ~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~ 47 (457)
||++...|+.| ..-...+.+.|.++|++|.++.++....++.
T Consensus 2 ~I~lgvtGs~~-a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 2 KILLAVTGSIA-AYKAADLTSQLTKLGYDVTVLMTQAATQFIT 43 (177)
T ss_pred EEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEEChHHHhhcc
Confidence 56665555544 4455699999999999999999987666654
No 323
>PRK00784 cobyric acid synthase; Provisional
Probab=50.99 E-value=2.4e+02 Score=28.35 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=26.4
Q ss_pred EEEEcCCC-CcChHHHHHHHHHHHhCCCeEEEEeC
Q 012744 6 VVVIPNPE-QGHVIPLLELSQNLAKHGLRITFVNS 39 (457)
Q Consensus 6 vl~~~~~~-~GH~~p~~~la~~L~~~Gh~Vt~~~~ 39 (457)
+++....+ .|=-.-...|++.|+++|++|..+=+
T Consensus 5 ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 5 LMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 44443443 48888999999999999999987755
No 324
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=50.92 E-value=1.4e+02 Score=24.55 Aligned_cols=136 Identities=13% Similarity=0.134 Sum_probs=70.2
Q ss_pred EEeCCcccCCHHHHHHHHHHHhhcCCcEEEEEcCCCCCCCcCCCchhHHHHhcCCceeecCCCchhhccCCCccceeecc
Q 012744 274 VAFGSHTVLEQNQFQELALGLEICNRSFLWVVRPDITNDANDAYPEGFRERVAARGQMISWSPQQKVLTHPSISCFMSHC 353 (457)
Q Consensus 274 vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~Hg 353 (457)
|-.||.+ +.+..+++.+.|+..+..+-+-+.+. ...|+.+. .|+.+..- ...++ ||.=+
T Consensus 3 IimGS~S--D~~~~~~a~~~L~~~gi~~dv~V~Sa------HRtp~~~~----------~~~~~a~~-~g~~v--iIa~A 61 (156)
T TIGR01162 3 IIMGSDS--DLPTMKKAADILEEFGIPYELRVVSA------HRTPELML----------EYAKEAEE-RGIKV--IIAGA 61 (156)
T ss_pred EEECcHh--hHHHHHHHHHHHHHcCCCeEEEEECc------ccCHHHHH----------HHHHHHHH-CCCeE--EEEeC
Confidence 3445433 55667777777777777654444332 33444422 12111000 12344 77777
Q ss_pred Ccchhhhhh---hcCCceeccccccc---hhhhHHhhhhhh--c--eeEEeeccCCCccCHHHHHHHHHHHhCCHHHHHH
Q 012744 354 GWNSTTEGV---SNGVPFLCWPFFAD---QFMNTTYICDVW--K--VGLRLERNQSGIIGREEIKNKVDQVLGDQNFKAR 423 (457)
Q Consensus 354 G~~s~~eal---~~GvP~l~~P~~~D---Q~~na~~v~~~l--G--~g~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 423 (457)
|...-+-.+ ..-+|+|.+|.... -.+--.-+.+ + | ++..- . ++..++.-++..|-.+ .|++++++
T Consensus 62 G~aa~Lpgvva~~t~~PVIgvP~~~~~l~G~daLlS~vq-mP~gvpvatv~-I--~~~~nAa~~AaqIl~~-~d~~l~~k 136 (156)
T TIGR01162 62 GGAAHLPGMVAALTPLPVIGVPVPSKALSGLDSLLSIVQ-MPSGVPVATVA-I--GNAGNAALLAAQILGI-KDPELAEK 136 (156)
T ss_pred CccchhHHHHHhccCCCEEEecCCccCCCCHHHHHHHhc-CCCCCeeEEEE-c--CChhHHHHHHHHHHcC-CCHHHHHH
Confidence 754332222 23578888887431 1111111222 1 4 22222 1 2445677666666443 47888888
Q ss_pred HHHHHHHHHhhh
Q 012744 424 ALKLKEKALSSV 435 (457)
Q Consensus 424 a~~l~~~~~~~~ 435 (457)
.+..+++..+.+
T Consensus 137 l~~~r~~~~~~v 148 (156)
T TIGR01162 137 LKEYRENQKEEV 148 (156)
T ss_pred HHHHHHHHHHHH
Confidence 888888877643
No 325
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=50.63 E-value=28 Score=29.25 Aligned_cols=110 Identities=15% Similarity=0.177 Sum_probs=60.2
Q ss_pred cChHHHHHHHHHH-HhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCC-------------CCCCC-------C
Q 012744 15 GHVIPLLELSQNL-AKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPD-------------GMEPW-------D 73 (457)
Q Consensus 15 GH~~p~~~la~~L-~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~-------~ 73 (457)
+.+.-.+..|+.| .+.|.+|.+.-. .+...+++.. ++..+.++. ..... .
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG-~ta~~lr~~~--------~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~ 87 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRG-GTAELLRKHV--------SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPN 87 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEH-HHHHHHHCC---------SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECC-HHHHHHHHhC--------CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEeccc
Confidence 5566778899999 788999987665 3444555442 444455441 00000 0
Q ss_pred CcchHHHHHHHHHHh-------cchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEEEechhh
Q 012744 74 DRSDMRKLLEKRLQV-------MPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAVVVITSA 139 (457)
Q Consensus 74 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~~ 139 (457)
...+...+.+.+--. ....++..+..++. .+.|+||.+. .+..+|+++|+|++.+.++..
T Consensus 88 ~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~---~G~~viVGg~---~~~~~A~~~gl~~v~i~sg~e 154 (176)
T PF06506_consen 88 IIPGLESIEELLGVDIKIYPYDSEEEIEAAIKQAKA---EGVDVIVGGG---VVCRLARKLGLPGVLIESGEE 154 (176)
T ss_dssp -SCCHHHHHHHHT-EEEEEEESSHHHHHHHHHHHHH---TT--EEEESH---HHHHHHHHTTSEEEESS--HH
T ss_pred ccHHHHHHHHHhCCceEEEEECCHHHHHHHHHHHHH---cCCcEEECCH---HHHHHHHHcCCcEEEEEecHH
Confidence 111222222222111 13367777777777 7899999995 457889999999999877544
No 326
>PRK07773 replicative DNA helicase; Validated
Probab=50.14 E-value=90 Score=34.04 Aligned_cols=43 Identities=21% Similarity=0.386 Sum_probs=32.9
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHh-CCCeEEEEeCCcchhHHHh
Q 012744 6 VVVIPNPEQGHVIPLLELSQNLAK-HGLRITFVNSEYNHKRVLE 48 (457)
Q Consensus 6 vl~~~~~~~GH~~p~~~la~~L~~-~Gh~Vt~~~~~~~~~~~~~ 48 (457)
+++..-|+.|=-.-.+.+|...+. .|..|.|++.......+..
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~ 263 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVM 263 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHH
Confidence 455667788999999999988875 4889999998776655443
No 327
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=50.10 E-value=2e+02 Score=26.07 Aligned_cols=36 Identities=8% Similarity=0.199 Sum_probs=27.3
Q ss_pred CEEEEEcCC--CCcChHHHHHHHHHHHhCCCeEEEEeC
Q 012744 4 PHVVVIPNP--EQGHVIPLLELSQNLAKHGLRITFVNS 39 (457)
Q Consensus 4 ~~vl~~~~~--~~GH~~p~~~la~~L~~~Gh~Vt~~~~ 39 (457)
.|++.++.+ +.|=-.-...||..|++.|++|.++-.
T Consensus 103 ~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~ 140 (274)
T TIGR03029 103 RKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDA 140 (274)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 455554443 447777789999999999999999854
No 328
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=50.08 E-value=85 Score=29.97 Aligned_cols=158 Identities=13% Similarity=0.031 Sum_probs=0.0
Q ss_pred CcccCCHHHHHHHHHHHhhcCCcEEEEEcCCCCCCCc-------CCCchhHHHHhcCCceeecCCCchh---hccCCCcc
Q 012744 278 SHTVLEQNQFQELALGLEICNRSFLWVVRPDITNDAN-------DAYPEGFRERVAARGQMISWSPQQK---VLTHPSIS 347 (457)
Q Consensus 278 s~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~-------~~~~~~~~~~~~~nv~~~~~~pq~~---ll~~~~~~ 347 (457)
|...-+...+..++++++..+.++.+.+......... ...+.....+-.=.+.+..|+||.+ +|-.||+
T Consensus 188 slF~Ye~~~l~~ll~~~~~~~~pv~llvp~g~~~~~~~~~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~- 266 (374)
T PF10093_consen 188 SLFCYENAALASLLDAWAASPKPVHLLVPEGRALNSLAAWLGDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLLWACDF- 266 (374)
T ss_pred EEEeCCchHHHHHHHHHhcCCCCeEEEecCCccHHHHHHHhccccccCccccccCCeEEEECCCCCHHHHHHHHHhCcc-
Q ss_pred ceeeccCcchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHH-------------
Q 012744 348 CFMSHCGWNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQV------------- 414 (457)
Q Consensus 348 ~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~------------- 414 (457)
-+-.|=- |..-|.++|+|.| -+.+=|.++|...+ |.+=...-. ..+.+ +...+++++
T Consensus 267 -NfVRGED-SfVRAqwAgkPFv--WhIYpQ~d~aHl~K--L~AFL~~y~---~~~~~-~~~~a~~~~~~~wN~~~~~~~~ 336 (374)
T PF10093_consen 267 -NFVRGED-SFVRAQWAGKPFV--WHIYPQEDDAHLDK--LDAFLDRYC---AGLPP-EAAAALRAFWRAWNGGQDAPDA 336 (374)
T ss_pred -ceEecch-HHHHHHHhCCCce--EecCcCchhhHHHH--HHHHHHHHh---hcCCH-HHHHHHHHHHHHHhCCCCchhh
Q ss_pred -----hCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHH
Q 012744 415 -----LGDQNFKARALKLKEKALSSVREGGSSNKAIQNFVQ 450 (457)
Q Consensus 415 -----l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 450 (457)
-.-+..++.++.+++.+.+ .++-...+..|++
T Consensus 337 w~~~~~~~~~~~~~a~~w~~~l~~----~~dLa~~L~~F~~ 373 (374)
T PF10093_consen 337 WQDLLEHLPEWQQHARAWRQQLLA----QGDLASNLVQFVE 373 (374)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHh----ccCHHHHHHHHHh
No 329
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=50.01 E-value=1.6e+02 Score=30.84 Aligned_cols=33 Identities=3% Similarity=-0.215 Sum_probs=24.1
Q ss_pred CCeeEEEecCCcc-hHHHHHHHcCCceEEEechh
Q 012744 106 EKTACLIADGAAG-WAIEVAEKMKLRRAVVVITS 138 (457)
Q Consensus 106 ~~~D~vv~D~~~~-~~~~~A~~lgiP~v~~~~~~ 138 (457)
.+||++|+=.+.. ....+-+.....++.++++.
T Consensus 74 ~~~D~iv~~~~~~ii~~~il~~~~~g~iN~H~sl 107 (660)
T PRK08125 74 LAPDVIFSFYYRNLLSDEILQLAPAGAFNLHGSL 107 (660)
T ss_pred cCCCEEEEccccccCCHHHHhhcCCCEEEEeCCc
Confidence 7999998876543 55556666677788888874
No 330
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.77 E-value=22 Score=32.81 Aligned_cols=58 Identities=17% Similarity=0.325 Sum_probs=40.8
Q ss_pred hhccCCCccceeeccCcchhhhhhh----cCCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHH
Q 012744 339 KVLTHPSISCFMSHCGWNSTTEGVS----NGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQV 414 (457)
Q Consensus 339 ~ll~~~~~~~~I~HgG~~s~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~ 414 (457)
++...+++ +|+=||-||++.++. .++|++.+-. . .+|.. ..++.+++.+++.++
T Consensus 60 ~~~~~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN~-------------G-~lGFL------t~~~~~~~~~~l~~i 117 (292)
T PRK01911 60 ELDGSADM--VISIGGDGTFLRTATYVGNSNIPILGINT-------------G-RLGFL------ATVSKEEIEETIDEL 117 (292)
T ss_pred hcccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEec-------------C-CCCcc------cccCHHHHHHHHHHH
Confidence 33345677 999999999999876 3788876622 1 23332 235788999999999
Q ss_pred hCCH
Q 012744 415 LGDQ 418 (457)
Q Consensus 415 l~~~ 418 (457)
+++.
T Consensus 118 ~~g~ 121 (292)
T PRK01911 118 LNGD 121 (292)
T ss_pred HcCC
Confidence 8764
No 331
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=49.62 E-value=1.8e+02 Score=25.59 Aligned_cols=37 Identities=11% Similarity=0.163 Sum_probs=29.7
Q ss_pred EEEEc-CCCCcChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012744 6 VVVIP-NPEQGHVIPLLELSQNLAKHGLRITFVNSEYN 42 (457)
Q Consensus 6 vl~~~-~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~ 42 (457)
|.|.. -|+.|=-.-...||..|+++|++|.++-....
T Consensus 4 I~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q 41 (246)
T TIGR03371 4 IAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQ 41 (246)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 44444 56778888999999999999999999976554
No 332
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=49.62 E-value=24 Score=27.96 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhh
Q 012744 17 VIPLLELSQNLAKHGLRITFVNSEYNHKRVLES 49 (457)
Q Consensus 17 ~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~ 49 (457)
+--.+=++..|.++||+|++++++.....++-.
T Consensus 13 ~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~va 45 (139)
T PF09001_consen 13 TPSALYLSYKLKKKGFEVVVAGNPAALKLLEVA 45 (139)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEE-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCeEEEecCHHHHhHhhhc
Confidence 334667799999999999999999888777654
No 333
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=49.62 E-value=2.2e+02 Score=28.56 Aligned_cols=45 Identities=11% Similarity=0.177 Sum_probs=35.9
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhh
Q 012744 5 HVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLES 49 (457)
Q Consensus 5 ~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~ 49 (457)
-+++.-.|+.|=-.=.+.++.+.+++|.+|.+++.....+.+...
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~ 309 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRN 309 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHH
Confidence 456666778899888999999999999999999988776655443
No 334
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=49.54 E-value=1.5e+02 Score=28.83 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=21.7
Q ss_pred CCeeEEEecCCcchHHHHHHHcCCceEEE
Q 012744 106 EKTACLIADGAAGWAIEVAEKMKLRRAVV 134 (457)
Q Consensus 106 ~~~D~vv~D~~~~~~~~~A~~lgiP~v~~ 134 (457)
.+||+++... ....+|+++|+|++.+
T Consensus 355 ~~pDl~ig~s---~~~~~a~~~gip~~~~ 380 (410)
T cd01968 355 KKADLLVAGG---KERYLALKLGIPFCDI 380 (410)
T ss_pred cCCCEEEECC---cchhhHHhcCCCEEEc
Confidence 7899999994 4567899999999864
No 335
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=49.18 E-value=1.2e+02 Score=29.85 Aligned_cols=42 Identities=19% Similarity=0.396 Sum_probs=32.3
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHh-CCCeEEEEeCCcchhHHH
Q 012744 6 VVVIPNPEQGHVIPLLELSQNLAK-HGLRITFVNSEYNHKRVL 47 (457)
Q Consensus 6 vl~~~~~~~GH~~p~~~la~~L~~-~Gh~Vt~~~~~~~~~~~~ 47 (457)
+++...|+.|=-.-.+.+|..++. .|+.|.|++.....+.+.
T Consensus 198 ~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~ 240 (434)
T TIGR00665 198 IILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLA 240 (434)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHH
Confidence 355567777888889999988775 699999999877665543
No 336
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=49.16 E-value=1.4e+02 Score=27.44 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=33.0
Q ss_pred hHHHHHHHHHhcCCCCCeeEEEecCCcc--hHHHHHHHcCCceEEEec
Q 012744 91 GKLEGLIEEIHGREGEKTACLIADGAAG--WAIEVAEKMKLRRAVVVI 136 (457)
Q Consensus 91 ~~~~~~~~~l~~~~~~~~D~vv~D~~~~--~~~~~A~~lgiP~v~~~~ 136 (457)
..+.++++.+++ .+.++|+++.... .+..+++..|++.+.+.+
T Consensus 215 ~~l~~l~~~ik~---~~v~~If~e~~~~~~~~~~ia~~~g~~v~~l~~ 259 (286)
T cd01019 215 KRLAKIRKEIKE---KGATCVFAEPQFHPKIAETLAEGTGAKVGELDP 259 (286)
T ss_pred HHHHHHHHHHHH---cCCcEEEecCCCChHHHHHHHHhcCceEEEecc
Confidence 345566666666 8899999998766 788899999998776543
No 337
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=48.97 E-value=62 Score=30.16 Aligned_cols=35 Identities=20% Similarity=0.347 Sum_probs=29.2
Q ss_pred EcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcch
Q 012744 9 IPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNH 43 (457)
Q Consensus 9 ~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~ 43 (457)
++.|++|=.--...|++.|.++|++|.+++-.+-.
T Consensus 36 itvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~ 70 (311)
T TIGR00682 36 LSVGGTGKTPVVVWLAELLKDRGLRVGVLSRGYGS 70 (311)
T ss_pred cccCCcChHHHHHHHHHHHHHCCCEEEEECCCCCC
Confidence 45678888878899999999999999999975543
No 338
>PLN02470 acetolactate synthase
Probab=48.70 E-value=55 Score=33.71 Aligned_cols=79 Identities=9% Similarity=0.061 Sum_probs=45.5
Q ss_pred HHHHHHHHhhcCCcEEEEEcCCCCCCCcCCCchhHHHHh-c-CCceeecC--------CCchhhccCCCccceeeccCcc
Q 012744 287 FQELALGLEICNRSFLWVVRPDITNDANDAYPEGFRERV-A-ARGQMISW--------SPQQKVLTHPSISCFMSHCGWN 356 (457)
Q Consensus 287 ~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~-~nv~~~~~--------~pq~~ll~~~~~~~~I~HgG~~ 356 (457)
-+.+++.|.+.|.+.|+-+.+. .. ..+.+.. . .+++.+.- .-.-.-.....++++++|.|-|
T Consensus 16 a~~l~~~L~~~GV~~vFg~pG~----~~----~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG 87 (585)
T PLN02470 16 ADILVEALEREGVDTVFAYPGG----AS----MEIHQALTRSNCIRNVLCRHEQGEVFAAEGYAKASGKVGVCIATSGPG 87 (585)
T ss_pred HHHHHHHHHHcCCCEEEEcCCc----cc----HHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCcc
Confidence 5667778888888888777655 11 1222222 1 12333211 1111111122355589998844
Q ss_pred ------hhhhhhhcCCceecccc
Q 012744 357 ------STTEGVSNGVPFLCWPF 373 (457)
Q Consensus 357 ------s~~eal~~GvP~l~~P~ 373 (457)
.+.+|...++|+|++.-
T Consensus 88 ~~N~l~gia~A~~~~~Pvl~I~G 110 (585)
T PLN02470 88 ATNLVTGLADALLDSVPLVAITG 110 (585)
T ss_pred HHHHHHHHHHHHhcCCcEEEEec
Confidence 78899999999999963
No 339
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=48.49 E-value=1.1e+02 Score=28.95 Aligned_cols=100 Identities=16% Similarity=0.207 Sum_probs=59.7
Q ss_pred CEEEEEcCCCC-cC----hHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchH
Q 012744 4 PHVVVIPNPEQ-GH----VIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDM 78 (457)
Q Consensus 4 ~~vl~~~~~~~-GH----~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (457)
..|+|.|..+. .+ ..-+..|++.|.++|.+|.++.++...+...+... .+..... +
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~-------~~~~~~~---l--------- 236 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAK-------GLPNAVI---L--------- 236 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHH-------hcCCccc---c---------
Confidence 45666666233 22 23589999999999999999888844444433210 1110000 0
Q ss_pred HHHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEEEechh
Q 012744 79 RKLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAVVVITS 138 (457)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~~ 138 (457)
.....+.++...+. .-|++|+-. +....+|..+|.|.|.+....
T Consensus 237 ---------~~k~sL~e~~~li~-----~a~l~I~~D--Sg~~HlAaA~~~P~I~iyg~t 280 (334)
T COG0859 237 ---------AGKTSLEELAALIA-----GADLVIGND--SGPMHLAAALGTPTIALYGPT 280 (334)
T ss_pred ---------CCCCCHHHHHHHHh-----cCCEEEccC--ChHHHHHHHcCCCEEEEECCC
Confidence 11123444444442 357777653 467889999999999987544
No 340
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=48.35 E-value=1.5e+02 Score=25.92 Aligned_cols=95 Identities=16% Similarity=0.263 Sum_probs=52.8
Q ss_pred CCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCC----CC--CCCCeEEEecCCCCCCCCCcchHHHHHHHH
Q 012744 12 PEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGK----NY--IGEQIHLVSIPDGMEPWDDRSDMRKLLEKR 85 (457)
Q Consensus 12 ~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (457)
-++|--.=+..++.-+...||.|+++++..........-... .. ....+.|.++.-+ + .++-
T Consensus 37 ~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~--~----------~~~~ 104 (235)
T COG2874 37 NGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLE--P----------VNWG 104 (235)
T ss_pred CCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEeccc--c----------cccC
Confidence 356777778899999999999999999987644332211000 00 0001222222101 0 1111
Q ss_pred HHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHH
Q 012744 86 LQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAI 121 (457)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~ 121 (457)
....+..++.+++.++. ++-|+||.|.+...+.
T Consensus 105 ~~~~~~~L~~l~~~~k~---~~~dViIIDSls~~~~ 137 (235)
T COG2874 105 RRSARKLLDLLLEFIKR---WEKDVIIIDSLSAFAT 137 (235)
T ss_pred hHHHHHHHHHHHhhHHh---hcCCEEEEecccHHhh
Confidence 12223345555555554 7889999998876443
No 341
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.09 E-value=1.4e+02 Score=26.44 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=29.8
Q ss_pred chHHHHHHHHHhcCCCCCeeEEEecCCcc---hHHHHHHHcCCceEE
Q 012744 90 PGKLEGLIEEIHGREGEKTACLIADGAAG---WAIEVAEKMKLRRAV 133 (457)
Q Consensus 90 ~~~~~~~~~~l~~~~~~~~D~vv~D~~~~---~~~~~A~~lgiP~v~ 133 (457)
...++.+++.|+ +.++.+.|.... -+..+|+..|||++.
T Consensus 137 ~~aM~~~m~~Lk-----~r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 137 EDAMEKLMEALK-----ERGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred HHHHHHHHHHHH-----HCCeEEEcccccccchhhhhHhhcCCceee
Confidence 335667777774 468999998666 567789999999998
No 342
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=48.09 E-value=25 Score=34.00 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=25.5
Q ss_pred EEEEEcCC-CCcChHHHHHHHHHHHhCCCeEEEE
Q 012744 5 HVVVIPNP-EQGHVIPLLELSQNLAKHGLRITFV 37 (457)
Q Consensus 5 ~vl~~~~~-~~GH~~p~~~la~~L~~~Gh~Vt~~ 37 (457)
+|++-... +.|-..-.+.|.++|++||++|.=+
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vqpf 35 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPF 35 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCccccc
Confidence 34554433 4488999999999999999999755
No 343
>CHL00067 rps2 ribosomal protein S2
Probab=47.93 E-value=69 Score=28.36 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=25.2
Q ss_pred CCeeEEEe-cCCcc-hHHHHHHHcCCceEEEechhhH
Q 012744 106 EKTACLIA-DGAAG-WAIEVAEKMKLRRAVVVITSAA 140 (457)
Q Consensus 106 ~~~D~vv~-D~~~~-~~~~~A~~lgiP~v~~~~~~~~ 140 (457)
..||+||. |+..- .+..=|.++|||.|.+..+-..
T Consensus 160 ~~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~~ 196 (230)
T CHL00067 160 KLPDIVIIIDQQEEYTALRECRKLGIPTISILDTNCD 196 (230)
T ss_pred cCCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCCC
Confidence 56887554 54443 6777789999999998766543
No 344
>PRK07004 replicative DNA helicase; Provisional
Probab=47.87 E-value=1.3e+02 Score=29.95 Aligned_cols=42 Identities=17% Similarity=0.332 Sum_probs=32.5
Q ss_pred EEEEcCCCCcChHHHHHHHHHHH-hCCCeEEEEeCCcchhHHH
Q 012744 6 VVVIPNPEQGHVIPLLELSQNLA-KHGLRITFVNSEYNHKRVL 47 (457)
Q Consensus 6 vl~~~~~~~GH~~p~~~la~~L~-~~Gh~Vt~~~~~~~~~~~~ 47 (457)
+++...|+.|=-.-.+.+|..++ +.|+.|.|++..-..+.+.
T Consensus 216 iviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql~ 258 (460)
T PRK07004 216 IIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLA 258 (460)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHH
Confidence 45566778899999999998876 4699999999877665543
No 345
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.70 E-value=1.1e+02 Score=29.44 Aligned_cols=42 Identities=12% Similarity=0.206 Sum_probs=35.3
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHH
Q 012744 5 HVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRV 46 (457)
Q Consensus 5 ~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~ 46 (457)
-|+|+-.-+.|-...+-.||..+.++|+.+-++|...++...
T Consensus 103 VimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagA 144 (483)
T KOG0780|consen 103 VIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGA 144 (483)
T ss_pred EEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccch
Confidence 356666778899999999999999999999999988876543
No 346
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=47.66 E-value=22 Score=32.94 Aligned_cols=55 Identities=22% Similarity=0.293 Sum_probs=39.4
Q ss_pred cCCCccceeeccCcchhhhhhhc----CCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCC
Q 012744 342 THPSISCFMSHCGWNSTTEGVSN----GVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGD 417 (457)
Q Consensus 342 ~~~~~~~~I~HgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~ 417 (457)
..+++ +|+=||-||+..+.+. ++|++.+ |. . .+|..- .++.+++.++|.+++++
T Consensus 67 ~~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGI--------N~-----G-~lGFLt------~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 67 SSMKF--AIVLGGDGTVLSAARQLAPCGIPLLTI--------NT-----G-HLGFLT------EAYLNQLDEAIDQVLAG 124 (305)
T ss_pred cCcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEE--------eC-----C-CCcccc------cCCHHHHHHHHHHHHcC
Confidence 34666 9999999999999764 7888876 21 1 233222 25678899999999876
Q ss_pred H
Q 012744 418 Q 418 (457)
Q Consensus 418 ~ 418 (457)
.
T Consensus 125 ~ 125 (305)
T PRK02649 125 Q 125 (305)
T ss_pred C
Confidence 4
No 347
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=47.62 E-value=1.7e+02 Score=28.21 Aligned_cols=32 Identities=16% Similarity=0.370 Sum_probs=25.0
Q ss_pred CEEEEEc-CCCCcChHHHHHHHHHHHhCCCeEEEEeCC
Q 012744 4 PHVVVIP-NPEQGHVIPLLELSQNLAKHGLRITFVNSE 40 (457)
Q Consensus 4 ~~vl~~~-~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~ 40 (457)
++|+++- .|..|. .+|..|.++||+|++....
T Consensus 99 ~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 99 RPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred ceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCCC
Confidence 5777775 666664 5789999999999998753
No 348
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=47.46 E-value=31 Score=30.62 Aligned_cols=44 Identities=11% Similarity=0.049 Sum_probs=32.0
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhC--CCeEEEEeCCcchhHHHhh
Q 012744 6 VVVIPNPEQGHVIPLLELSQNLAKH--GLRITFVNSEYNHKRVLES 49 (457)
Q Consensus 6 vl~~~~~~~GH~~p~~~la~~L~~~--Gh~Vt~~~~~~~~~~~~~~ 49 (457)
|++--.|+.+=+.-...|++.|.++ ||+|.++.++.....+...
T Consensus 2 i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~~ 47 (234)
T TIGR02700 2 IGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRMY 47 (234)
T ss_pred eEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhhh
Confidence 3333333333446899999999999 9999999998877666544
No 349
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=47.27 E-value=27 Score=32.39 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=40.4
Q ss_pred ccCCCccceeeccCcchhhhhhh----cCCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhC
Q 012744 341 LTHPSISCFMSHCGWNSTTEGVS----NGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLG 416 (457)
Q Consensus 341 l~~~~~~~~I~HgG~~s~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~ 416 (457)
...+++ +|+=||-||+..++. .++|++.+.. . .+|..- .+..+++.++|.++++
T Consensus 70 ~~~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN~-------------G-~lGFL~------~~~~~~~~~~l~~i~~ 127 (306)
T PRK03372 70 ADGCEL--VLVLGGDGTILRAAELARAADVPVLGVNL-------------G-HVGFLA------EAEAEDLDEAVERVVD 127 (306)
T ss_pred ccCCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEec-------------C-CCceec------cCCHHHHHHHHHHHHc
Confidence 345677 999999999999865 3788887732 1 234433 2567889999999987
Q ss_pred CH
Q 012744 417 DQ 418 (457)
Q Consensus 417 ~~ 418 (457)
+.
T Consensus 128 g~ 129 (306)
T PRK03372 128 RD 129 (306)
T ss_pred CC
Confidence 54
No 350
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=47.07 E-value=84 Score=34.20 Aligned_cols=97 Identities=13% Similarity=0.080 Sum_probs=59.7
Q ss_pred hhccCCCccceeec---cCcchh-hhhhhcCC---ceeccccccchhhhHHhhhhhhc-eeEEeeccCCCccCHHHHHHH
Q 012744 339 KVLTHPSISCFMSH---CGWNST-TEGVSNGV---PFLCWPFFADQFMNTTYICDVWK-VGLRLERNQSGIIGREEIKNK 410 (457)
Q Consensus 339 ~ll~~~~~~~~I~H---gG~~s~-~eal~~Gv---P~l~~P~~~DQ~~na~~v~~~lG-~g~~l~~~~~~~~~~~~l~~~ 410 (457)
+++..+++ ++.- -|+|-+ .|.++++. -+++++-+. --| .. || -|+.++ ..+.++++++
T Consensus 455 AlY~~ADV--~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfa---Gaa---~~-L~~~AllVN-----P~D~~~vA~A 520 (934)
T PLN03064 455 ALYAVTDV--ALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFA---GAA---QS-LGAGAILVN-----PWNITEVAAS 520 (934)
T ss_pred HHHHhCCE--EEeCccccccCchHHHHHHhhcCCCCCeEEeCCC---chH---HH-hCCceEEEC-----CCCHHHHHHH
Confidence 57778888 6654 488755 49999954 122223221 112 22 44 456664 4799999999
Q ss_pred HHHHhC-CH-HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhc
Q 012744 411 VDQVLG-DQ-NFKARALKLKEKALSSVREGGSSNKAIQNFVQSIKQ 454 (457)
Q Consensus 411 i~~~l~-~~-~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 454 (457)
|.++|+ ++ +-+++.+++.+.+.. -+...-.+.|+.+|.+
T Consensus 521 I~~AL~M~~~Er~~r~~~~~~~V~~-----~d~~~Wa~~fl~~L~~ 561 (934)
T PLN03064 521 IAQALNMPEEEREKRHRHNFMHVTT-----HTAQEWAETFVSELND 561 (934)
T ss_pred HHHHHhCCHHHHHHHHHHHHhhccc-----CCHHHHHHHHHHHHHH
Confidence 999987 44 455555555555543 4556667777777653
No 351
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=46.83 E-value=2.4e+02 Score=27.74 Aligned_cols=35 Identities=14% Similarity=0.195 Sum_probs=26.6
Q ss_pred EEEEEcCCCC-cChHHHHHHHHHHHhCCCeEEEEeC
Q 012744 5 HVVVIPNPEQ-GHVIPLLELSQNLAKHGLRITFVNS 39 (457)
Q Consensus 5 ~vl~~~~~~~-GH~~p~~~la~~L~~~Gh~Vt~~~~ 39 (457)
++++....+. |=..-...|++.|.++|.+|..+-+
T Consensus 3 ~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K~ 38 (433)
T PRK13896 3 GFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAKA 38 (433)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEee
Confidence 4555554444 8888899999999999999976643
No 352
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=46.74 E-value=1.9e+02 Score=27.92 Aligned_cols=34 Identities=26% Similarity=0.328 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEEE
Q 012744 92 KLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAVV 134 (457)
Q Consensus 92 ~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~ 134 (457)
.++++++. .+||+++.+. ....+|+++++|++.+
T Consensus 332 ~~~~~l~~------~~pdl~ig~~---~~~~~a~~~~~~~~~~ 365 (398)
T PF00148_consen 332 EIEELLEE------LKPDLLIGSS---HERYLAKKLGIPLIRI 365 (398)
T ss_dssp HHHHHHHH------HT-SEEEESH---HHHHHHHHTT--EEE-
T ss_pred HHHHHHHh------cCCCEEEech---hhHHHHHHhCCCeEEE
Confidence 34455555 7899999994 3777889999999885
No 353
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=46.34 E-value=1.1e+02 Score=26.60 Aligned_cols=30 Identities=23% Similarity=0.164 Sum_probs=22.3
Q ss_pred CCCCcChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012744 11 NPEQGHVIPLLELSQNLAKHGLRITFVNSEYN 42 (457)
Q Consensus 11 ~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~ 42 (457)
.++.|++- ..||.+|++.||+|++.+....
T Consensus 6 i~GtGniG--~alA~~~a~ag~eV~igs~r~~ 35 (211)
T COG2085 6 IIGTGNIG--SALALRLAKAGHEVIIGSSRGP 35 (211)
T ss_pred EeccChHH--HHHHHHHHhCCCeEEEecCCCh
Confidence 34555554 4688999999999999976444
No 354
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=46.17 E-value=46 Score=30.57 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=20.1
Q ss_pred HHHHHHHHhCCCeEEEEeCCcchh
Q 012744 21 LELSQNLAKHGLRITFVNSEYNHK 44 (457)
Q Consensus 21 ~~la~~L~~~Gh~Vt~~~~~~~~~ 44 (457)
.++|..++++|++|.+++....+.
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~~~ 26 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPAHS 26 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCC
Confidence 578899999999999999876553
No 355
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=45.89 E-value=1.5e+02 Score=27.63 Aligned_cols=42 Identities=17% Similarity=0.251 Sum_probs=32.8
Q ss_pred hHHHHHHHHHhcCCCCCeeEEEecCCcc--hHHHHHHHcCCceEEEe
Q 012744 91 GKLEGLIEEIHGREGEKTACLIADGAAG--WAIEVAEKMKLRRAVVV 135 (457)
Q Consensus 91 ~~~~~~~~~l~~~~~~~~D~vv~D~~~~--~~~~~A~~lgiP~v~~~ 135 (457)
+.+.++++.+++ .+..+|+++.... .+..+++..|++.+.+.
T Consensus 239 ~~l~~l~~~ik~---~~v~~If~e~~~~~~~~~~la~e~g~~v~~ld 282 (311)
T PRK09545 239 QRLHEIRTQLVE---QKATCVFAEPQFRPAVIESVAKGTSVRMGTLD 282 (311)
T ss_pred HHHHHHHHHHHH---cCCCEEEecCCCChHHHHHHHHhcCCeEEEec
Confidence 345566666666 8899999999776 77789999999987754
No 356
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=45.87 E-value=57 Score=26.42 Aligned_cols=38 Identities=18% Similarity=0.301 Sum_probs=29.2
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHhhcCCcEEEEEc
Q 012744 268 ANSVIYVAFGSHTVLEQNQFQELALGLEICNRSFLWVVR 306 (457)
Q Consensus 268 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~ 306 (457)
...+|++++|+......+.++.+++.+. .+.+++++..
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~ 87 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNP 87 (150)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEEC
Confidence 3459999999987777888888988874 3567777654
No 357
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=45.83 E-value=34 Score=28.73 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=27.9
Q ss_pred cChHH-HHHHHHHHH-hCCCeEEEEeCCcchhHHHhh
Q 012744 15 GHVIP-LLELSQNLA-KHGLRITFVNSEYNHKRVLES 49 (457)
Q Consensus 15 GH~~p-~~~la~~L~-~~Gh~Vt~~~~~~~~~~~~~~ 49 (457)
||... ...+.+.|+ ++||+|.++.++...+.+...
T Consensus 10 g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~~~ 46 (174)
T TIGR02699 10 GDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVKWY 46 (174)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHHHH
Confidence 77765 889999998 469999999998877665533
No 358
>PRK08840 replicative DNA helicase; Provisional
Probab=45.61 E-value=1.7e+02 Score=29.18 Aligned_cols=42 Identities=17% Similarity=0.333 Sum_probs=32.2
Q ss_pred EEEEcCCCCcChHHHHHHHHHHH-hCCCeEEEEeCCcchhHHH
Q 012744 6 VVVIPNPEQGHVIPLLELSQNLA-KHGLRITFVNSEYNHKRVL 47 (457)
Q Consensus 6 vl~~~~~~~GH~~p~~~la~~L~-~~Gh~Vt~~~~~~~~~~~~ 47 (457)
+++-.-|+.|=-.-.+.+|...+ +.|+.|.|++..-..+.+.
T Consensus 220 iviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~~ql~ 262 (464)
T PRK08840 220 IIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQLM 262 (464)
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCHHHHH
Confidence 45566778888888899999887 4699999999877655443
No 359
>PRK05748 replicative DNA helicase; Provisional
Probab=45.59 E-value=1.3e+02 Score=29.71 Aligned_cols=42 Identities=21% Similarity=0.390 Sum_probs=32.9
Q ss_pred EEEEcCCCCcChHHHHHHHHHHH-hCCCeEEEEeCCcchhHHH
Q 012744 6 VVVIPNPEQGHVIPLLELSQNLA-KHGLRITFVNSEYNHKRVL 47 (457)
Q Consensus 6 vl~~~~~~~GH~~p~~~la~~L~-~~Gh~Vt~~~~~~~~~~~~ 47 (457)
+++...|+.|=-.-.+.+|...+ ++|+.|.|++..-..+.+.
T Consensus 206 ivIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~ 248 (448)
T PRK05748 206 IIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLV 248 (448)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHH
Confidence 45566778899999999998876 4699999999877665543
No 360
>PLN02327 CTP synthase
Probab=45.51 E-value=1.1e+02 Score=31.03 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=31.0
Q ss_pred EEEEEcCCCC---cChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012744 5 HVVVIPNPEQ---GHVIPLLELSQNLAKHGLRITFVNSEYN 42 (457)
Q Consensus 5 ~vl~~~~~~~---GH~~p~~~la~~L~~~Gh~Vt~~~~~~~ 42 (457)
|.+|++.|.. |-=.-...|+..|+.||++|+..--.++
T Consensus 2 k~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K~DPY 42 (557)
T PLN02327 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPY 42 (557)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHHCCCceeeeecccc
Confidence 7889988844 5556788999999999999999876554
No 361
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=45.39 E-value=1.4e+02 Score=26.71 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=34.6
Q ss_pred CCEEEEEcCC-CCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHH
Q 012744 3 SPHVVVIPNP-EQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRV 46 (457)
Q Consensus 3 ~~~vl~~~~~-~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~ 46 (457)
+.|..|+-.- +-|-..-...||-+|+.-+|.|.++++.+.+...
T Consensus 18 slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNlS 62 (323)
T KOG2825|consen 18 SLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNLS 62 (323)
T ss_pred eeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcccchH
Confidence 3466666543 4599999999999999999999999987765433
No 362
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=45.19 E-value=42 Score=31.04 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=28.0
Q ss_pred CEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHH
Q 012744 4 PHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVL 47 (457)
Q Consensus 4 ~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~ 47 (457)
|||+|+-.|+.| ..+|..|+++||+|+++..+...+.+.
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r~~~~~~~~ 39 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVRPKRAKALR 39 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEecHHHHHHHH
Confidence 468888777666 457888999999999998733333343
No 363
>PRK13604 luxD acyl transferase; Provisional
Probab=45.07 E-value=45 Score=30.94 Aligned_cols=35 Identities=11% Similarity=0.215 Sum_probs=29.5
Q ss_pred CEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEe
Q 012744 4 PHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVN 38 (457)
Q Consensus 4 ~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~ 38 (457)
..+++++.|..++..-+..+|+.|+++|+.|.-+=
T Consensus 37 ~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD 71 (307)
T PRK13604 37 NNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYD 71 (307)
T ss_pred CCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEec
Confidence 46777888888887779999999999999988754
No 364
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=44.80 E-value=1.3e+02 Score=25.14 Aligned_cols=97 Identities=16% Similarity=0.151 Sum_probs=45.4
Q ss_pred CEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCc----chh--HHHhhhcCCCCCCCCeEEEecCCCCCCCCCcch
Q 012744 4 PHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEY----NHK--RVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSD 77 (457)
Q Consensus 4 ~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (457)
-.|.+++..+.|=....+.+|-+-+-+|.+|.++=.=. ..+ .+... +++.+.....+...... .
T Consensus 4 G~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~~l--------~~~~~~~~g~~f~~~~~--~ 73 (172)
T PF02572_consen 4 GLIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKALKKL--------PNVEIERFGKGFVWRMN--E 73 (172)
T ss_dssp --EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHHHGGG--------T--EEEE--TT----GG--G
T ss_pred cEEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHHhC--------CeEEEEEcCCcccccCC--C
Confidence 35677888888888877777777777788888874211 111 22222 35777776654433211 1
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCc
Q 012744 78 MRKLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAA 117 (457)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~ 117 (457)
...- ....+..++...+.+.. ..+|+||-|...
T Consensus 74 ~~~~----~~~~~~~~~~a~~~i~~---~~~dlvILDEi~ 106 (172)
T PF02572_consen 74 EEED----RAAAREGLEEAKEAISS---GEYDLVILDEIN 106 (172)
T ss_dssp HHHH----HHHHHHHHHHHHHHTT----TT-SEEEEETHH
T ss_pred cHHH----HHHHHHHHHHHHHHHhC---CCCCEEEEcchH
Confidence 1111 22222333344444333 789999999644
No 365
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=44.75 E-value=69 Score=29.97 Aligned_cols=34 Identities=21% Similarity=0.380 Sum_probs=29.9
Q ss_pred EcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012744 9 IPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYN 42 (457)
Q Consensus 9 ~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~ 42 (457)
++.|+.|-.--.+.||++|++||..|-+++-.+-
T Consensus 55 ltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYg 88 (336)
T COG1663 55 LTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYG 88 (336)
T ss_pred EEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcC
Confidence 5678889988999999999999999999986554
No 366
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=44.64 E-value=1.5e+02 Score=26.93 Aligned_cols=86 Identities=10% Similarity=0.138 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHHHHHHHhcchHHHHHHH
Q 012744 19 PLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLLEKRLQVMPGKLEGLIE 98 (457)
Q Consensus 19 p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (457)
-+..|++.|.++|++|++++.+...+......... ++.....+ .....+.+++.
T Consensus 141 ~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~~~~----~~~~~~~~----------------------~~~~~l~e~~~ 194 (279)
T cd03789 141 RFAALADRLLARGARVVLTGGPAERELAEEIAAAL----GGPRVVNL----------------------AGKTSLRELAA 194 (279)
T ss_pred HHHHHHHHHHHCCCEEEEEechhhHHHHHHHHHhc----CCCccccC----------------------cCCCCHHHHHH
Confidence 58899999999999999998877655544331000 00000000 00112334444
Q ss_pred HHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEEEech
Q 012744 99 EIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAVVVIT 137 (457)
Q Consensus 99 ~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~~ 137 (457)
.+. +-|++|+-. .....+|..+|+|++.+...
T Consensus 195 li~-----~~~l~I~~D--sg~~HlA~a~~~p~i~l~g~ 226 (279)
T cd03789 195 LLA-----RADLVVTND--SGPMHLAAALGTPTVALFGP 226 (279)
T ss_pred HHH-----hCCEEEeeC--CHHHHHHHHcCCCEEEEECC
Confidence 442 358888753 36788889999999998753
No 367
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=44.60 E-value=35 Score=28.75 Aligned_cols=30 Identities=17% Similarity=0.092 Sum_probs=21.7
Q ss_pred CCeeEEEecCCcch--HHHHHHHcCCceEEEe
Q 012744 106 EKTACLIADGAAGW--AIEVAEKMKLRRAVVV 135 (457)
Q Consensus 106 ~~~D~vv~D~~~~~--~~~~A~~lgiP~v~~~ 135 (457)
.+||+||+...... ....-+..|||++.+.
T Consensus 68 l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 68 LKPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred cCCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 59999998754432 4444578899998874
No 368
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=44.43 E-value=83 Score=29.75 Aligned_cols=33 Identities=18% Similarity=0.436 Sum_probs=25.5
Q ss_pred CCCEEEEEcCCCCcChHHHHHHHHHHHhCCC-eEEEEeC
Q 012744 2 SSPHVVVIPNPEQGHVIPLLELSQNLAKHGL-RITFVNS 39 (457)
Q Consensus 2 ~~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh-~Vt~~~~ 39 (457)
+++||+++-.|+-| ..+|+.|++.|+ +++++-.
T Consensus 23 ~~~~VlIiG~GglG-----s~va~~La~aGvg~i~lvD~ 56 (338)
T PRK12475 23 REKHVLIVGAGALG-----AANAEALVRAGIGKLTIADR 56 (338)
T ss_pred cCCcEEEECCCHHH-----HHHHHHHHHcCCCEEEEEcC
Confidence 36788998888776 678999999998 6666543
No 369
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=44.21 E-value=50 Score=26.05 Aligned_cols=37 Identities=22% Similarity=0.213 Sum_probs=29.7
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012744 6 VVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYN 42 (457)
Q Consensus 6 vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~ 42 (457)
++++..|..++-.-+..+++.|+++|+.|..+..+..
T Consensus 1 ~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~ 37 (145)
T PF12695_consen 1 VVVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDYPGH 37 (145)
T ss_dssp EEEEECTTTTTTHHHHHHHHHHHHTTEEEEEESCTTS
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEecCCC
Confidence 3566777777778899999999999999999865443
No 370
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=44.16 E-value=37 Score=32.01 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=26.7
Q ss_pred CEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCc
Q 012744 4 PHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEY 41 (457)
Q Consensus 4 ~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~ 41 (457)
+||.|+-.|..| ..+|..|+++||+|+++....
T Consensus 3 mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecHH
Confidence 678888777776 457888999999999998644
No 371
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=44.06 E-value=2.1e+02 Score=24.62 Aligned_cols=38 Identities=13% Similarity=0.403 Sum_probs=28.6
Q ss_pred CEEEEEc--CCCCcChHHHHHHHHHHHh-CCCeEEEEeCCc
Q 012744 4 PHVVVIP--NPEQGHVIPLLELSQNLAK-HGLRITFVNSEY 41 (457)
Q Consensus 4 ~~vl~~~--~~~~GH~~p~~~la~~L~~-~Gh~Vt~~~~~~ 41 (457)
++++.++ -|+.|=-.-...||..|++ +|++|.++-...
T Consensus 35 ~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~ 75 (207)
T TIGR03018 35 NNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADL 75 (207)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 4555544 3566888889999999996 699999986544
No 372
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=43.88 E-value=45 Score=28.20 Aligned_cols=37 Identities=19% Similarity=0.114 Sum_probs=27.2
Q ss_pred HHHHHHhcCCCCCeeEEEecCC--cchHHHHHHHcCCceEEE
Q 012744 95 GLIEEIHGREGEKTACLIADGA--AGWAIEVAEKMKLRRAVV 134 (457)
Q Consensus 95 ~~~~~l~~~~~~~~D~vv~D~~--~~~~~~~A~~lgiP~v~~ 134 (457)
.+.+..+. .++|.||+=.. ...|..+|.++|+|++.+
T Consensus 44 ~~~~~~~~---~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 44 ELAERYKD---DGIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred HHHHHhcc---cCCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 44444443 67999887653 338899999999999996
No 373
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=43.56 E-value=44 Score=27.50 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=24.5
Q ss_pred CCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCc
Q 012744 3 SPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEY 41 (457)
Q Consensus 3 ~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~ 41 (457)
..+|+++-.|..| ...++.|.+.||+|+++.+..
T Consensus 13 ~~~vlVvGGG~va-----~rka~~Ll~~ga~V~VIsp~~ 46 (157)
T PRK06719 13 NKVVVIIGGGKIA-----YRKASGLKDTGAFVTVVSPEI 46 (157)
T ss_pred CCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEcCcc
Confidence 4566666554333 678899999999999996443
No 374
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=43.47 E-value=34 Score=33.88 Aligned_cols=55 Identities=15% Similarity=0.173 Sum_probs=39.6
Q ss_pred cCCCccceeeccCcchhhhhhhc----CCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCC
Q 012744 342 THPSISCFMSHCGWNSTTEGVSN----GVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGD 417 (457)
Q Consensus 342 ~~~~~~~~I~HgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~ 417 (457)
..+++ +|+=||-||++.+... ++|++.+ |. . .+|..- .++.+++.++|.+++++
T Consensus 261 ~~~Dl--VIsiGGDGTlL~Aar~~~~~~iPILGI--------N~-----G-~LGFLt------~i~~~e~~~~Le~il~G 318 (508)
T PLN02935 261 TKVDL--VITLGGDGTVLWAASMFKGPVPPVVPF--------SM-----G-SLGFMT------PFHSEQYRDCLDAILKG 318 (508)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhccCCCcEEEE--------eC-----C-Ccceec------ccCHHHHHHHHHHHHcC
Confidence 34666 9999999999999763 5677655 21 1 244432 36889999999999976
Q ss_pred H
Q 012744 418 Q 418 (457)
Q Consensus 418 ~ 418 (457)
+
T Consensus 319 ~ 319 (508)
T PLN02935 319 P 319 (508)
T ss_pred C
Confidence 5
No 375
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=43.36 E-value=39 Score=27.26 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=22.1
Q ss_pred HHHHHHHhCCCeEEEEeCCcchhHHHhh
Q 012744 22 ELSQNLAKHGLRITFVNSEYNHKRVLES 49 (457)
Q Consensus 22 ~la~~L~~~Gh~Vt~~~~~~~~~~~~~~ 49 (457)
-+|..|+++||+|++++.....+.+.+.
T Consensus 12 ~~a~~L~~~g~~V~l~~r~~~~~~~~~~ 39 (151)
T PF02558_consen 12 LYAARLAQAGHDVTLVSRSPRLEAIKEQ 39 (151)
T ss_dssp HHHHHHHHTTCEEEEEESHHHHHHHHHH
T ss_pred HHHHHHHHCCCceEEEEccccHHhhhhe
Confidence 4788999999999999987744455555
No 376
>PRK06904 replicative DNA helicase; Validated
Probab=43.25 E-value=1.7e+02 Score=29.23 Aligned_cols=42 Identities=17% Similarity=0.303 Sum_probs=32.4
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHh-CCCeEEEEeCCcchhHHH
Q 012744 6 VVVIPNPEQGHVIPLLELSQNLAK-HGLRITFVNSEYNHKRVL 47 (457)
Q Consensus 6 vl~~~~~~~GH~~p~~~la~~L~~-~Gh~Vt~~~~~~~~~~~~ 47 (457)
+++-..|+.|=-.-.+.+|...+. .|+.|.|++..-..+.+.
T Consensus 224 iiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql~ 266 (472)
T PRK06904 224 IIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIM 266 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHH
Confidence 455667888988888999988765 599999999877665444
No 377
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=43.12 E-value=82 Score=29.98 Aligned_cols=32 Identities=25% Similarity=0.279 Sum_probs=24.2
Q ss_pred hccCCCccceeeccCcch---hhhhhhcCCceecc
Q 012744 340 VLTHPSISCFMSHCGWNS---TTEGVSNGVPFLCW 371 (457)
Q Consensus 340 ll~~~~~~~~I~HgG~~s---~~eal~~GvP~l~~ 371 (457)
++..-+-+.+|++||+-| ...|...|+|+++.
T Consensus 86 i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 86 RIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEE
Confidence 344433334999999986 89999999999763
No 378
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=43.10 E-value=1.6e+02 Score=24.43 Aligned_cols=39 Identities=15% Similarity=0.278 Sum_probs=32.5
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 012744 6 VVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHK 44 (457)
Q Consensus 6 vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~ 44 (457)
+++.-.++.|=-.....++..|.++|.+|.++....+..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~ 41 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRP 41 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCh
Confidence 456667788999999999999999999999998776543
No 379
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=42.83 E-value=38 Score=33.54 Aligned_cols=46 Identities=20% Similarity=0.196 Sum_probs=36.1
Q ss_pred CCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhh
Q 012744 3 SPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLES 49 (457)
Q Consensus 3 ~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~ 49 (457)
++||++...|+.+ .+-...|++.|.++||+|.++.++....++...
T Consensus 70 ~k~IllgVtGsIA-ayka~~lvr~L~k~G~~V~VvmT~sA~~fv~p~ 115 (475)
T PRK13982 70 SKRVTLIIGGGIA-AYKALDLIRRLKERGAHVRCVLTKAAQQFVTPL 115 (475)
T ss_pred CCEEEEEEccHHH-HHHHHHHHHHHHhCcCEEEEEECcCHHHHhhHH
Confidence 4677776666544 347889999999999999999999887777654
No 380
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=42.70 E-value=3.2e+02 Score=29.26 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=29.9
Q ss_pred CEEEEEc--CCCCcChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012744 4 PHVVVIP--NPEQGHVIPLLELSQNLAKHGLRITFVNSEYN 42 (457)
Q Consensus 4 ~~vl~~~--~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~ 42 (457)
.|++.++ -|+.|--.-...||..|++.|++|.++-....
T Consensus 546 ~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~ 586 (754)
T TIGR01005 546 PEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGR 586 (754)
T ss_pred ceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 3444444 44669999999999999999999999965443
No 381
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.33 E-value=67 Score=26.28 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=34.5
Q ss_pred HHHHHHHHHhc--CCCCCeeEEEecCCcc----------hHHHHHHHcCCceEEEechhh
Q 012744 92 KLEGLIEEIHG--REGEKTACLIADGAAG----------WAIEVAEKMKLRRAVVVITSA 139 (457)
Q Consensus 92 ~~~~~~~~l~~--~~~~~~D~vv~D~~~~----------~~~~~A~~lgiP~v~~~~~~~ 139 (457)
.++.++..|+. -+ ..||+|++-.-+- -+..+|+++|+|++-.+.+..
T Consensus 108 nvrnWlSQL~~hAYc-E~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg 166 (219)
T KOG0081|consen 108 NVRNWLSQLQTHAYC-ENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTG 166 (219)
T ss_pred HHHHHHHHHHHhhcc-CCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccC
Confidence 46777777764 24 8899999865432 467789999999998766543
No 382
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=42.18 E-value=65 Score=24.86 Aligned_cols=42 Identities=12% Similarity=0.097 Sum_probs=34.4
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHH
Q 012744 6 VVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVL 47 (457)
Q Consensus 6 vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~ 47 (457)
++..+.++..|-....-++..|.++|++|.++......+.+.
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~ 43 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIV 43 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHH
Confidence 577788888999999999999999999999997655444443
No 383
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=42.05 E-value=33 Score=30.18 Aligned_cols=26 Identities=12% Similarity=0.399 Sum_probs=19.5
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEeCCc
Q 012744 16 HVIPLLELSQNLAKHGLRITFVNSEY 41 (457)
Q Consensus 16 H~~p~~~la~~L~~~Gh~Vt~~~~~~ 41 (457)
|+..|...|++|.++||+|.++....
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 56688999999999999999998763
No 384
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=41.55 E-value=2.7e+02 Score=26.11 Aligned_cols=39 Identities=10% Similarity=0.221 Sum_probs=31.8
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcch
Q 012744 5 HVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNH 43 (457)
Q Consensus 5 ~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~ 43 (457)
.++|+-.++.|=-.-+..||..|+.+|++|.++....+.
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 345566667798889999999999999999999876654
No 385
>PTZ00445 p36-lilke protein; Provisional
Probab=41.43 E-value=2.4e+02 Score=24.60 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=23.9
Q ss_pred cChHH-HHHHHHHHHhCCCeEEEEeCCcch
Q 012744 15 GHVIP-LLELSQNLAKHGLRITFVNSEYNH 43 (457)
Q Consensus 15 GH~~p-~~~la~~L~~~Gh~Vt~~~~~~~~ 43 (457)
+|+.| +..++++|.++|..|+++|.....
T Consensus 74 ~~~tpefk~~~~~l~~~~I~v~VVTfSd~~ 103 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNSNIKISVVTFSDKE 103 (219)
T ss_pred ccCCHHHHHHHHHHHHCCCeEEEEEccchh
Confidence 34566 888999999999999999976653
No 386
>CHL00175 minD septum-site determining protein; Validated
Probab=41.41 E-value=2.7e+02 Score=25.23 Aligned_cols=37 Identities=19% Similarity=0.469 Sum_probs=27.9
Q ss_pred EEEEEc--CCCCcChHHHHHHHHHHHhCCCeEEEEeCCc
Q 012744 5 HVVVIP--NPEQGHVIPLLELSQNLAKHGLRITFVNSEY 41 (457)
Q Consensus 5 ~vl~~~--~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~ 41 (457)
+++.+. -|+-|=-.-...||..|+++|++|.++-...
T Consensus 16 ~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~ 54 (281)
T CHL00175 16 RIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADI 54 (281)
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 444443 3456888889999999999999999885433
No 387
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=41.19 E-value=1.8e+02 Score=23.03 Aligned_cols=57 Identities=7% Similarity=0.105 Sum_probs=40.9
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecC
Q 012744 5 HVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIP 66 (457)
Q Consensus 5 ~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (457)
+|++-+.++-+|-.----++..|..+|++|+.+......+.+.+.... .+..++.++
T Consensus 1 ~vvigtv~gD~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~-----~~adiVglS 57 (128)
T cd02072 1 TIVLGVIGSDCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIE-----TDADAILVS 57 (128)
T ss_pred CEEEEEeCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----cCCCEEEEe
Confidence 477888889999999999999999999999999865544433322111 156666665
No 388
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=40.73 E-value=2.3e+02 Score=26.96 Aligned_cols=109 Identities=20% Similarity=0.208 Sum_probs=60.2
Q ss_pred CCCEEEEEcCCCC-cChHHHHHHHHHHHhCC--CeEEEEeCCcchhH----HHhhhcCCCCCCCCeEEEecCCCCCCCCC
Q 012744 2 SSPHVVVIPNPEQ-GHVIPLLELSQNLAKHG--LRITFVNSEYNHKR----VLESLEGKNYIGEQIHLVSIPDGMEPWDD 74 (457)
Q Consensus 2 ~~~~vl~~~~~~~-GH~~p~~~la~~L~~~G--h~Vt~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (457)
++++++..|..-. |. .-.-.+.+.+.+.| .++.+++.+...+. +.+... ..+ .+.....+ +
T Consensus 3 ~~~~~~~~p~~i~~G~-g~l~~l~~~l~~~~~~~~~livtd~~~~~~~~~~l~~~l~---~~~-~~~~~~~~------~- 70 (350)
T PRK00843 3 EKSHWIQLPRDVVVGH-GVLDDIGDVCSDLKLTGRALIVTGPTTKKIAGDRVEENLE---DAG-DVEVVIVD------E- 70 (350)
T ss_pred CCceEEeCCCeEEECC-CHHHHHHHHHHHhCCCCeEEEEECCcHHHHHHHHHHHHHH---hcC-CeeEEeCC------C-
Confidence 4677777665433 32 34566777777655 58888887654432 222111 011 22221111 0
Q ss_pred cchHHHHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcc---hHHHHHHHcCCceEEEechh
Q 012744 75 RSDMRKLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAG---WAIEVAEKMKLRRAVVVITS 138 (457)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~---~~~~~A~~lgiP~v~~~~~~ 138 (457)
.....++++++.+.+ .+.|+||+=.-.. .+..+|...|+|+|.+-|+.
T Consensus 71 -------------~t~~~v~~~~~~~~~---~~~d~IIaiGGGsv~D~ak~vA~~rgip~I~IPTT~ 121 (350)
T PRK00843 71 -------------ATMEEVEKVEEKAKD---VNAGFLIGVGGGKVIDVAKLAAYRLGIPFISVPTAA 121 (350)
T ss_pred -------------CCHHHHHHHHHHhhc---cCCCEEEEeCCchHHHHHHHHHHhcCCCEEEeCCCc
Confidence 112345556665555 5789988644322 56667788899999986664
No 389
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=40.69 E-value=38 Score=28.29 Aligned_cols=45 Identities=16% Similarity=0.150 Sum_probs=31.4
Q ss_pred cCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecC
Q 012744 10 PNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIP 66 (457)
Q Consensus 10 ~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (457)
-+|++|++-- .++++|.++||+|+.++-......- . .+++.+...
T Consensus 3 V~GatG~vG~--~l~~~L~~~~~~V~~~~R~~~~~~~--~--------~~~~~~~~d 47 (183)
T PF13460_consen 3 VFGATGFVGR--ALAKQLLRRGHEVTALVRSPSKAED--S--------PGVEIIQGD 47 (183)
T ss_dssp EETTTSHHHH--HHHHHHHHTTSEEEEEESSGGGHHH--C--------TTEEEEESC
T ss_pred EECCCChHHH--HHHHHHHHCCCEEEEEecCchhccc--c--------cccccceee
Confidence 3566776654 4899999999999999966542222 2 378877653
No 390
>PRK04940 hypothetical protein; Provisional
Probab=40.57 E-value=68 Score=27.11 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=27.1
Q ss_pred CeeEEEecCCcc-hHHHHHHHcCCceEEEechh
Q 012744 107 KTACLIADGAAG-WAIEVAEKMKLRRAVVVITS 138 (457)
Q Consensus 107 ~~D~vv~D~~~~-~~~~~A~~lgiP~v~~~~~~ 138 (457)
+++++|...... +|..+|+++|+|.|.+.|+.
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv 92 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPNL 92 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCCC
Confidence 568888887666 99999999999999987764
No 391
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=40.50 E-value=41 Score=31.00 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=24.4
Q ss_pred CEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeC
Q 012744 4 PHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNS 39 (457)
Q Consensus 4 ~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~ 39 (457)
|||+++-.|..| ..+|..|.++||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 467777666655 5678889999999999986
No 392
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=40.48 E-value=55 Score=30.25 Aligned_cols=41 Identities=10% Similarity=0.019 Sum_probs=30.1
Q ss_pred CCCCEEEEEcCCCC-cChH---HHHHHHHHHHhCCCeEEEEeCCc
Q 012744 1 MSSPHVVVIPNPEQ-GHVI---PLLELSQNLAKHGLRITFVNSEY 41 (457)
Q Consensus 1 m~~~~vl~~~~~~~-GH~~---p~~~la~~L~~~Gh~Vt~~~~~~ 41 (457)
|.+++|++++.+.. =|-. ....+.++|.++||+|.++....
T Consensus 2 ~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~ 46 (304)
T PRK01372 2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGE 46 (304)
T ss_pred CCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCc
Confidence 55678988875533 2333 56889999999999999986543
No 393
>PRK06749 replicative DNA helicase; Provisional
Probab=40.29 E-value=2.3e+02 Score=27.83 Aligned_cols=42 Identities=26% Similarity=0.367 Sum_probs=34.2
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHH
Q 012744 6 VVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVL 47 (457)
Q Consensus 6 vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~ 47 (457)
+++-.-|+.|=-.-.+.+|...+.+|+.|.|++..-....+.
T Consensus 189 iiIaarPgmGKTafal~ia~~~a~~g~~v~~fSlEMs~~ql~ 230 (428)
T PRK06749 189 VVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEMSSKQLL 230 (428)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEeeCCHHHHH
Confidence 455667888999999999999998999999998777655444
No 394
>PHA02754 hypothetical protein; Provisional
Probab=40.20 E-value=47 Score=21.68 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=20.9
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhh
Q 012744 409 NKVDQVLGDQNFKARALKLKEKALSS 434 (457)
Q Consensus 409 ~~i~~~l~~~~~~~~a~~l~~~~~~~ 434 (457)
+.|.+++.+++|++..+++++.+.++
T Consensus 5 eEi~k~i~eK~Fke~MRelkD~LSe~ 30 (67)
T PHA02754 5 EEIPKAIMEKDFKEAMRELKDILSEA 30 (67)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhC
Confidence 44566667899999999999998864
No 395
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=40.16 E-value=2.7e+02 Score=25.64 Aligned_cols=104 Identities=14% Similarity=0.131 Sum_probs=56.1
Q ss_pred CCEEEEEcCCCCcChHHHHHHHHHHHhCC--CeEEEEeCCc--chhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchH
Q 012744 3 SPHVVVIPNPEQGHVIPLLELSQNLAKHG--LRITFVNSEY--NHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDM 78 (457)
Q Consensus 3 ~~~vl~~~~~~~GH~~p~~~la~~L~~~G--h~Vt~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (457)
++|++++..+. ||- +.+|.++..+.. .+|.++.+.. ..+...+. |+.+..++.....
T Consensus 93 ~~kiavl~Sg~-g~n--l~al~~~~~~~~l~~~i~~visn~~~~~~~A~~~---------gIp~~~~~~~~~~------- 153 (289)
T PRK13010 93 RPKVVIMVSKF-DHC--LNDLLYRWRMGELDMDIVGIISNHPDLQPLAVQH---------DIPFHHLPVTPDT------- 153 (289)
T ss_pred CeEEEEEEeCC-Ccc--HHHHHHHHHCCCCCcEEEEEEECChhHHHHHHHc---------CCCEEEeCCCccc-------
Confidence 67888887776 443 345555554432 5666665433 33344443 7777776532110
Q ss_pred HHHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcc-hHHHHHHHcCCceEEEechh
Q 012744 79 RKLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAG-WAIEVAEKMKLRRAVVVITS 138 (457)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~-~~~~~A~~lgiP~v~~~~~~ 138 (457)
.......+.++++. .++|++|.-.+.. ....+-+.+.-.++-++++.
T Consensus 154 -------~~~~~~~~~~~l~~------~~~Dlivlagym~il~~~~l~~~~~~iiNiHpSl 201 (289)
T PRK13010 154 -------KAQQEAQILDLIET------SGAELVVLARYMQVLSDDLSRKLSGRAINIHHSF 201 (289)
T ss_pred -------ccchHHHHHHHHHH------hCCCEEEEehhhhhCCHHHHhhccCCceeeCccc
Confidence 01111223344444 8999988876554 44455555555666665543
No 396
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=40.11 E-value=3.1e+02 Score=27.25 Aligned_cols=41 Identities=22% Similarity=0.457 Sum_probs=31.3
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHH
Q 012744 6 VVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRV 46 (457)
Q Consensus 6 vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~ 46 (457)
+++.--|+.|=-.=++.++..+.++|++|.|++.......+
T Consensus 97 ilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi 137 (454)
T TIGR00416 97 ILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQI 137 (454)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHH
Confidence 34455567788888888999999999999999987655443
No 397
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=39.84 E-value=39 Score=28.41 Aligned_cols=105 Identities=10% Similarity=0.189 Sum_probs=59.7
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHhhcCCcEEEEEcCCCCCCCcCCCchhHHHHhcCCceeecCCCchhhccCCCccc
Q 012744 269 NSVIYVAFGSHTVLEQNQFQELALGLEICNRSFLWVVRPDITNDANDAYPEGFRERVAARGQMISWSPQQKVLTHPSISC 348 (457)
Q Consensus 269 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~ 348 (457)
+.+-.+.+|.++ +.+++.+...|.+++..-... .+.-. .. .....+.+.+++++.+|+
T Consensus 37 ~tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~~---------~~~~~--~~--~~~~~~~~l~ell~~aDi-- 94 (178)
T PF02826_consen 37 KTVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRSP---------KPEEG--AD--EFGVEYVSLDELLAQADI-- 94 (178)
T ss_dssp SEEEEESTSHHH-------HHHHHHHHHTT-EEEEEESSC---------HHHHH--HH--HTTEEESSHHHHHHH-SE--
T ss_pred CEEEEEEEcCCc-------CeEeeeeecCCceeEEecccC---------Chhhh--cc--cccceeeehhhhcchhhh--
Confidence 447888888765 456666666788877666533 11100 00 012256678899999999
Q ss_pred eeeccCcchhhhhhhcCCceeccccccchhhhHHhhhhhhcee-EEeeccCCCccCHHHHHHHHH
Q 012744 349 FMSHCGWNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVG-LRLERNQSGIIGREEIKNKVD 412 (457)
Q Consensus 349 ~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g-~~l~~~~~~~~~~~~l~~~i~ 412 (457)
++.|+-.+. ...+..|+..+.. ++=| +-++..+.+-++.+.|.++++
T Consensus 95 v~~~~plt~----------------~T~~li~~~~l~~-mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 95 VSLHLPLTP----------------ETRGLINAEFLAK-MKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp EEE-SSSST----------------TTTTSBSHHHHHT-STTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred hhhhhcccc----------------ccceeeeeeeeec-cccceEEEeccchhhhhhhHHHHHHh
Confidence 888874432 1345667777776 5544 444444445567777777664
No 398
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=39.54 E-value=1.8e+02 Score=24.92 Aligned_cols=132 Identities=13% Similarity=0.113 Sum_probs=81.6
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHhhcCCcEEEEEcCCCCCCCcCCCchhHHHHhcCCceeecCCCchhhccCCCcccee
Q 012744 271 VIYVAFGSHTVLEQNQFQELALGLEICNRSFLWVVRPDITNDANDAYPEGFRERVAARGQMISWSPQQKVLTHPSISCFM 350 (457)
Q Consensus 271 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I 350 (457)
..++...... ...++-.++.+.+...+..+|+..+. +.-+.+.|.++.++++. =-||++ .=
T Consensus 53 t~~~~~k~~~-~r~~~d~~l~~~l~~~~~dlvvLAGy------MrIL~~~fl~~~~grIl----------NIHPSL--LP 113 (200)
T COG0299 53 TVVLDRKEFP-SREAFDRALVEALDEYGPDLVVLAGY------MRILGPEFLSRFEGRIL----------NIHPSL--LP 113 (200)
T ss_pred EEEeccccCC-CHHHHHHHHHHHHHhcCCCEEEEcch------HHHcCHHHHHHhhcceE----------ecCccc--cc
Confidence 4555444322 23445566888888888888777663 35677777766555333 247887 88
Q ss_pred eccCcchhhhhhhcCCceecccccc--chhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCCHHHHHHHHHHH
Q 012744 351 SHCGWNSTTEGVSNGVPFLCWPFFA--DQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGDQNFKARALKLK 428 (457)
Q Consensus 351 ~HgG~~s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~a~~l~ 428 (457)
.++|..+..+++.+|+..-.+-.++ +..+-+-.+.+ ..+.+.. ++ |.+.|.+.|... +..-|=+-.+.+.
T Consensus 114 ~f~G~h~~~~A~~aG~k~sG~TVH~V~e~vD~GpII~Q---~~Vpv~~---~D-t~etl~~RV~~~-Eh~lyp~~v~~~~ 185 (200)
T COG0299 114 AFPGLHAHEQALEAGVKVSGCTVHFVTEGVDTGPIIAQ---AAVPVLP---GD-TAETLEARVLEQ-EHRLYPLAVKLLA 185 (200)
T ss_pred CCCCchHHHHHHHcCCCccCcEEEEEccCCCCCCeEEE---EeeeecC---CC-CHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 8999999999999999987666542 34444433332 2222321 22 889999888774 2334444444444
Q ss_pred H
Q 012744 429 E 429 (457)
Q Consensus 429 ~ 429 (457)
+
T Consensus 186 ~ 186 (200)
T COG0299 186 E 186 (200)
T ss_pred h
Confidence 3
No 399
>PRK11914 diacylglycerol kinase; Reviewed
Probab=39.42 E-value=61 Score=30.10 Aligned_cols=81 Identities=9% Similarity=0.019 Sum_probs=45.5
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHhhcCCcEEEEEcCCCCCCCcCCCchhHHHHhcCCceeecCCCchhhccCCCcccee
Q 012744 271 VIYVAFGSHTVLEQNQFQELALGLEICNRSFLWVVRPDITNDANDAYPEGFRERVAARGQMISWSPQQKVLTHPSISCFM 350 (457)
Q Consensus 271 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I 350 (457)
.+.++--|-.....+.+..+.+.++..+..+.+..... .... ..+. .+......++ +|
T Consensus 12 ~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~-----~~~~-~~~a--------------~~~~~~~~d~--vv 69 (306)
T PRK11914 12 TVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTD-----AHDA-RHLV--------------AAALAKGTDA--LV 69 (306)
T ss_pred EEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCC-----HHHH-HHHH--------------HHHHhcCCCE--EE
Confidence 34444333222234556677888888887765444321 0000 0111 0011222455 99
Q ss_pred eccCcchhhhhh----hcCCceecccc
Q 012744 351 SHCGWNSTTEGV----SNGVPFLCWPF 373 (457)
Q Consensus 351 ~HgG~~s~~eal----~~GvP~l~~P~ 373 (457)
--||-||+.|++ ..++|+-++|.
T Consensus 70 v~GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 70 VVGGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred EECCchHHHHHhHHhccCCCcEEEEeC
Confidence 999999998886 44789999996
No 400
>PRK10490 sensor protein KdpD; Provisional
Probab=39.42 E-value=1.5e+02 Score=32.50 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=34.7
Q ss_pred CCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012744 3 SPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYN 42 (457)
Q Consensus 3 ~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~ 42 (457)
|.||+|=..|+-|--+.|+.-|++|+++|++|++---...
T Consensus 24 ~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~~e~h 63 (895)
T PRK10490 24 KLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGVVETH 63 (895)
T ss_pred cEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEEeeCC
Confidence 4688888899999999999999999999999997664433
No 401
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=39.23 E-value=1.6e+02 Score=26.89 Aligned_cols=104 Identities=13% Similarity=0.142 Sum_probs=53.8
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHHHHH
Q 012744 6 VVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLLEKR 85 (457)
Q Consensus 6 vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (457)
|++.-.|+.|=-.....|++.|.+.|.+|.++...... +.. +. |.. ... .+ ..
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~--~~~----------~~-y~~----------~~~-Ek---~~ 56 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG--IDR----------ND-YAD----------SKK-EK---EA 56 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH---TT----------SS-S------------GGG-HH---HH
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc--cch----------hh-hhc----------hhh-hH---HH
Confidence 56667889999999999999999999999998853322 111 11 110 000 11 11
Q ss_pred HHhcchHHHHHHHHHhcCCCCCeeEEEecCCcc------hHHHHHHHcCCceEEEechhhHHHHH
Q 012744 86 LQVMPGKLEGLIEEIHGREGEKTACLIADGAAG------WAIEVAEKMKLRRAVVVITSAATVAL 144 (457)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~------~~~~~A~~lgiP~v~~~~~~~~~~~~ 144 (457)
...+...+++.+. +-++||+|...+ -.+.+|+..+.++..++-........
T Consensus 57 R~~l~s~v~r~ls--------~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~ 113 (270)
T PF08433_consen 57 RGSLKSAVERALS--------KDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCL 113 (270)
T ss_dssp HHHHHHHHHHHHT--------T-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHH
T ss_pred HHHHHHHHHHhhc--------cCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHH
Confidence 1222223333322 238999998664 34679999999998876665544333
No 402
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=39.15 E-value=44 Score=29.90 Aligned_cols=26 Identities=12% Similarity=0.168 Sum_probs=21.1
Q ss_pred CCccceeeccCcchhhhhhhc----CCceecc
Q 012744 344 PSISCFMSHCGWNSTTEGVSN----GVPFLCW 371 (457)
Q Consensus 344 ~~~~~~I~HgG~~s~~eal~~----GvP~l~~ 371 (457)
+++ +|+-||-||+..++.. ++|++.+
T Consensus 26 ~Dl--vi~iGGDGTlL~a~~~~~~~~~PvlGI 55 (246)
T PRK04761 26 ADV--IVALGGDGFMLQTLHRYMNSGKPVYGM 55 (246)
T ss_pred CCE--EEEECCCHHHHHHHHHhcCCCCeEEEE
Confidence 566 9999999999988654 6788766
No 403
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=39.04 E-value=2.8e+02 Score=24.72 Aligned_cols=43 Identities=16% Similarity=0.202 Sum_probs=33.0
Q ss_pred CCCCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcch
Q 012744 1 MSSPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNH 43 (457)
Q Consensus 1 m~~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~ 43 (457)
|.+.+++.-.-|+.|=-.....||..|+++|++|.++-.....
T Consensus 1 m~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n 43 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVN 43 (241)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 5555555555667788888999999999999999999665443
No 404
>PLN02891 IMP cyclohydrolase
Probab=38.85 E-value=1.4e+02 Score=29.82 Aligned_cols=87 Identities=7% Similarity=0.019 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCC--CCCCC----CCcchHHHHHHHHHHhcch
Q 012744 18 IPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPD--GMEPW----DDRSDMRKLLEKRLQVMPG 91 (457)
Q Consensus 18 ~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~ 91 (457)
.-+..+|+.|.+.|.+ ++++....+.+++. |+....+++ ++|+. -++-++.-+-..+...-.+
T Consensus 33 tgi~~fAk~L~~~gve--IiSTgGTak~L~e~---------Gi~v~~Vsd~TgfPEiL~GRVKTLHPkIhgGILa~r~~~ 101 (547)
T PLN02891 33 TDLALLANGLQELGYT--IVSTGGTASALEAA---------GVSVTKVEELTNFPEMLDGRVKTLHPAVHGGILARRDQE 101 (547)
T ss_pred cCHHHHHHHHHHCCCE--EEEcchHHHHHHHc---------CCceeeHHhccCCchhhCCcccccCchhhhhhhcCCCCH
Confidence 3478999999997665 56787888888877 787777763 33332 2444444444333323222
Q ss_pred HHHHHHHHHhcCCCCCeeEEEecCCcch
Q 012744 92 KLEGLIEEIHGREGEKTACLIADGAAGW 119 (457)
Q Consensus 92 ~~~~~~~~l~~~~~~~~D~vv~D~~~~~ 119 (457)
+-++.+.+..-...|+||+. ++++
T Consensus 102 ---~h~~~l~~~~I~~IDlVvVN-LYPF 125 (547)
T PLN02891 102 ---HHMEALNEHGIGTIDVVVVN-LYPF 125 (547)
T ss_pred ---HHHHHHHHcCCCceeeEEEe-ccCh
Confidence 22233333222667999999 4443
No 405
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.77 E-value=46 Score=30.71 Aligned_cols=57 Identities=7% Similarity=0.061 Sum_probs=39.4
Q ss_pred hccCCCccceeeccCcchhhhhhh----cCCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHh
Q 012744 340 VLTHPSISCFMSHCGWNSTTEGVS----NGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVL 415 (457)
Q Consensus 340 ll~~~~~~~~I~HgG~~s~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l 415 (457)
+...+++ +|+=||-||+..++. +++|++.+-.. .+|..- .++.+++.+++++++
T Consensus 60 ~~~~~d~--vi~lGGDGT~L~aa~~~~~~~~Pilgin~G--------------~lGFl~------~~~~~~~~~~l~~i~ 117 (292)
T PRK03378 60 IGQQADL--AIVVGGDGNMLGAARVLARYDIKVIGINRG--------------NLGFLT------DLDPDNALQQLSDVL 117 (292)
T ss_pred cCCCCCE--EEEECCcHHHHHHHHHhcCCCCeEEEEECC--------------CCCccc------ccCHHHHHHHHHHHH
Confidence 3345677 999999999999974 36787765211 123322 256789999999998
Q ss_pred CCH
Q 012744 416 GDQ 418 (457)
Q Consensus 416 ~~~ 418 (457)
++.
T Consensus 118 ~g~ 120 (292)
T PRK03378 118 EGH 120 (292)
T ss_pred cCC
Confidence 654
No 406
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=38.57 E-value=97 Score=25.59 Aligned_cols=28 Identities=11% Similarity=0.178 Sum_probs=21.5
Q ss_pred ccceeeccCcc------hhhhhhhcCCceecccc
Q 012744 346 ISCFMSHCGWN------STTEGVSNGVPFLCWPF 373 (457)
Q Consensus 346 ~~~~I~HgG~~------s~~eal~~GvP~l~~P~ 373 (457)
.+.+++|+|-| .+.+|...++|+|++.-
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 33378877744 67789999999999964
No 407
>PRK04946 hypothetical protein; Provisional
Probab=38.27 E-value=17 Score=30.62 Aligned_cols=57 Identities=11% Similarity=0.024 Sum_probs=36.8
Q ss_pred HHHHHHHHhhcCCcEEEEEcCCCCCCCcCCCchhHHHHhcCCceeecCCCch-hhccCCCccceeeccCcchhh
Q 012744 287 FQELALGLEICNRSFLWVVRPDITNDANDAYPEGFRERVAARGQMISWSPQQ-KVLTHPSISCFMSHCGWNSTT 359 (457)
Q Consensus 287 ~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~-~ll~~~~~~~~I~HgG~~s~~ 359 (457)
+..++..+...+.+.+.++.+. . .+++.+. +..|+.|. .++..+.. =-+|||.|.++
T Consensus 112 L~~fl~~a~~~g~r~v~IIHGk----G-----~gvLk~~-----V~~wL~q~~~V~af~~A--~~~~GG~GA~~ 169 (181)
T PRK04946 112 LGALIAACRKEHVFCACVMHGH----G-----KHILKQQ-----TPLWLAQHPDVMAFHQA--PKEWGGDAALL 169 (181)
T ss_pred HHHHHHHHHHcCCCEEEEEcCC----C-----HhHHHHH-----HHHHHcCCchhheeecc--CcccCCceEEE
Confidence 5556666666788877776554 1 1322222 55888764 67777776 77899998765
No 408
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=38.21 E-value=2.4e+02 Score=27.49 Aligned_cols=100 Identities=20% Similarity=0.335 Sum_probs=62.8
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHHHHH
Q 012744 6 VVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLLEKR 85 (457)
Q Consensus 6 vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (457)
+++---|+.|--.=++.++..|+++| .|.+++......-++-...+. ++.. +. +..+
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL-----~~~~----~~-------------l~l~ 152 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRL-----GLPT----NN-------------LYLL 152 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHHHh-----CCCc----cc-------------eEEe
Confidence 44455678888889999999999999 999999887755443211000 1110 00 0011
Q ss_pred HHhcchHHHHHHHHHhcCCCCCeeEEEecCCcc-h--------------------HHHHHHHcCCceEEE
Q 012744 86 LQVMPGKLEGLIEEIHGREGEKTACLIADGAAG-W--------------------AIEVAEKMKLRRAVV 134 (457)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~-~--------------------~~~~A~~lgiP~v~~ 134 (457)
....++++++.+.. .+||++|.|.-.. + ...+|+..||+.+.+
T Consensus 153 ---aEt~~e~I~~~l~~---~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiV 216 (456)
T COG1066 153 ---AETNLEDIIAELEQ---EKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIV 216 (456)
T ss_pred ---hhcCHHHHHHHHHh---cCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 11245566666665 8999999997432 1 134677788887776
No 409
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=38.16 E-value=64 Score=27.56 Aligned_cols=30 Identities=13% Similarity=0.028 Sum_probs=24.0
Q ss_pred CCeeEEEecCCc--chHHHHHHHcCCceEEEe
Q 012744 106 EKTACLIADGAA--GWAIEVAEKMKLRRAVVV 135 (457)
Q Consensus 106 ~~~D~vv~D~~~--~~~~~~A~~lgiP~v~~~ 135 (457)
.++|+|++=... +.|..+|..+|+|++.+.
T Consensus 49 ~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vR 80 (189)
T PRK09219 49 EGITKILTIEASGIAPAVMAALALGVPVVFAK 80 (189)
T ss_pred CCCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 678998875433 388889999999999964
No 410
>PLN02285 methionyl-tRNA formyltransferase
Probab=38.13 E-value=1.8e+02 Score=27.49 Aligned_cols=33 Identities=9% Similarity=-0.030 Sum_probs=23.2
Q ss_pred CCeeEEEecCCcc-hHHHHHHHcCCceEEEechh
Q 012744 106 EKTACLIADGAAG-WAIEVAEKMKLRRAVVVITS 138 (457)
Q Consensus 106 ~~~D~vv~D~~~~-~~~~~A~~lgiP~v~~~~~~ 138 (457)
.+||++|+=.+.. ....+-+.....++.++++.
T Consensus 92 ~~~Dliv~~~~~~ilp~~~l~~~~~g~iNiHpSL 125 (334)
T PLN02285 92 LQPDLCITAAYGNILPQKFLDIPKLGTVNIHPSL 125 (334)
T ss_pred hCCCEEEhhHhhhhcCHHHHhhccCCEEEEeccc
Confidence 7999988875543 44555566666788888775
No 411
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=38.10 E-value=57 Score=30.76 Aligned_cols=42 Identities=12% Similarity=0.177 Sum_probs=31.6
Q ss_pred CCCCEEEEEcCCCCc-C---hHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012744 1 MSSPHVVVIPNPEQG-H---VIPLLELSQNLAKHGLRITFVNSEYN 42 (457)
Q Consensus 1 m~~~~vl~~~~~~~G-H---~~p~~~la~~L~~~Gh~Vt~~~~~~~ 42 (457)
|+|+||+++..|... | +.....++++|.+.||+|+.+-....
T Consensus 1 m~~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~~~~~~~~ 46 (333)
T PRK01966 1 MMKMRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVVPIGITKD 46 (333)
T ss_pred CCCcEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEEEEEECCC
Confidence 888999888766442 2 33577899999999999998875443
No 412
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=38.06 E-value=3e+02 Score=24.75 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=29.2
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCc
Q 012744 6 VVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEY 41 (457)
Q Consensus 6 vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~ 41 (457)
+++.-.|+.|=-.=...++...+++|..|.|++...
T Consensus 39 ~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 39 INITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES 74 (259)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 455556677888888888888888999999999764
No 413
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=38.02 E-value=3.4e+02 Score=25.34 Aligned_cols=99 Identities=16% Similarity=0.215 Sum_probs=58.2
Q ss_pred CEEEEEcCCCCc---ChH--HHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchH
Q 012744 4 PHVVVIPNPEQG---HVI--PLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDM 78 (457)
Q Consensus 4 ~~vl~~~~~~~G---H~~--p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (457)
.-|+|.|..+.| +|. -+..|++.|.++|+.|.+++++...+....... . .+...
T Consensus 175 ~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~-------~-----~~~~~--------- 233 (334)
T TIGR02195 175 PIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEA-------L-----LPGEL--------- 233 (334)
T ss_pred CEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHH-------h-----CCccc---------
Confidence 345555544322 222 588999999888999999988776555443210 0 00000
Q ss_pred HHHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEEEec
Q 012744 79 RKLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAVVVI 136 (457)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~ 136 (457)
. .+ .....+.++...++ +-|++|+-. .....+|..+|+|.+.++.
T Consensus 234 ---~-~l--~g~~sL~el~ali~-----~a~l~I~~D--SGp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 234 ---R-NL--AGETSLDEAVDLIA-----LAKAVVTND--SGLMHVAAALNRPLVALYG 278 (334)
T ss_pred ---c-cC--CCCCCHHHHHHHHH-----hCCEEEeeC--CHHHHHHHHcCCCEEEEEC
Confidence 0 00 01113444444442 358888764 4578899999999999865
No 414
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=37.87 E-value=68 Score=25.57 Aligned_cols=43 Identities=9% Similarity=0.132 Sum_probs=32.9
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHh
Q 012744 6 VVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLE 48 (457)
Q Consensus 6 vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~ 48 (457)
-.++..|..--+.|..-|+...++.|++|+++.+.--...+..
T Consensus 6 ~IIl~SG~~dk~~~a~iias~A~A~G~EV~VF~TfwGL~~l~K 48 (137)
T COG2210 6 GIILASGTLDKAYAALIIASGAAAMGYEVTVFFTFWGLMALRK 48 (137)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEeHHHHHHhhc
Confidence 3455566668889999999999999999999988554444443
No 415
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=37.85 E-value=46 Score=32.93 Aligned_cols=119 Identities=20% Similarity=0.239 Sum_probs=58.3
Q ss_pred CCcChHHHHHHHHHHHh--------CCC----eEEEEeC--CcchhHHHhhhcCCCCCCCCeEEEecCCCCCCC----C-
Q 012744 13 EQGHVIPLLELSQNLAK--------HGL----RITFVNS--EYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPW----D- 73 (457)
Q Consensus 13 ~~GH~~p~~~la~~L~~--------~Gh----~Vt~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~- 73 (457)
+.|.+.=.+.+|++|.+ .|- +|.++|- +..................+.....+|-+-..+ +
T Consensus 295 TGGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t~~~q~le~~~gt~~a~IlRvPF~~~~gi~~kwi 374 (550)
T PF00862_consen 295 TGGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGTTCNQRLEKVSGTENARILRVPFGPEKGILRKWI 374 (550)
T ss_dssp SSHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCGGGTSSEEEETTESSEEEEEE-ESESTEEE-S--
T ss_pred CCCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCCCccccccccCCCCCcEEEEecCCCCcchhhhcc
Confidence 34666678888988864 344 3656552 111110000001111233467777777444321 1
Q ss_pred CcchHHHHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcc--hHHHHHHHcCCceEEEechh
Q 012744 74 DRSDMRKLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAG--WAIEVAEKMKLRRAVVVITS 138 (457)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~--~~~~~A~~lgiP~v~~~~~~ 138 (457)
...+.+.+++.+... ....+...+. .+||+|+..-... .|..+++++|||...+-.+.
T Consensus 375 srf~lWPyLe~fa~d---~~~~i~~e~~----~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaHsL 434 (550)
T PF00862_consen 375 SRFDLWPYLEEFADD---AEREILAELQ----GKPDLIIGNYSDGNLVASLLSRKLGVTQCFIAHSL 434 (550)
T ss_dssp -GGG-GGGHHHHHHH---HHHHHHHHHT----S--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-SS-
T ss_pred chhhchhhHHHHHHH---HHHHHHHHhC----CCCcEEEeccCcchHHHHHHHhhcCCceehhhhcc
Confidence 223445555555432 2233333332 6899999874333 78889999999998875444
No 416
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=37.82 E-value=2.7e+02 Score=24.15 Aligned_cols=33 Identities=6% Similarity=-0.017 Sum_probs=22.8
Q ss_pred CCeeEEEecCCcc-hHHHHHHHcCCceEEEechh
Q 012744 106 EKTACLIADGAAG-WAIEVAEKMKLRRAVVVITS 138 (457)
Q Consensus 106 ~~~D~vv~D~~~~-~~~~~A~~lgiP~v~~~~~~ 138 (457)
.++|++|+-.+.. ....+-+.+.-.++-++++.
T Consensus 77 ~~~Dliv~agy~~il~~~~l~~~~~~~iNiHpSL 110 (207)
T PLN02331 77 AGVDFVLLAGYLKLIPVELVRAYPRSILNIHPAL 110 (207)
T ss_pred cCCCEEEEeCcchhCCHHHHhhCCCCEEEEeCcc
Confidence 8999999986654 44555566666677776654
No 417
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=37.75 E-value=66 Score=29.72 Aligned_cols=41 Identities=17% Similarity=0.154 Sum_probs=32.2
Q ss_pred CCCCEEE-EEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCc
Q 012744 1 MSSPHVV-VIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEY 41 (457)
Q Consensus 1 m~~~~vl-~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~ 41 (457)
|.|||++ |..=|+.|=-.-...||..|++.|++|.++-...
T Consensus 1 ~~~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~ 42 (295)
T PRK13234 1 MSKLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDP 42 (295)
T ss_pred CCcceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 7788664 4444566888889999999999999999995443
No 418
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=37.57 E-value=1.7e+02 Score=24.15 Aligned_cols=118 Identities=14% Similarity=0.082 Sum_probs=57.8
Q ss_pred cCCCCcChHH-HHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCC--CCcchHHHHHHHHH
Q 012744 10 PNPEQGHVIP-LLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPW--DDRSDMRKLLEKRL 86 (457)
Q Consensus 10 ~~~~~GH~~p-~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 86 (457)
.+...+.+.. +..+|++|.++|++|.=+........-.. ........++++.... .....-..-|..=-
T Consensus 5 ~~~~~~~~d~lL~~~a~~L~~~G~rv~G~vQ~~~~~~~~~--------~~~m~l~dl~~G~~~~IsQ~LG~gs~gCrLD~ 76 (159)
T PF10649_consen 5 VYDDGGDIDALLAAFAARLRARGVRVAGLVQRNTADGDGG--------RCDMDLRDLPSGRRIRISQDLGPGSRGCRLDP 76 (159)
T ss_pred EcCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCC--------ccceEEEECCCCCEEEEeeccCCCCcccccCH
Confidence 3444566665 55789999999999987775442211111 1245555665432111 00000000010000
Q ss_pred HhcchHHHHHHHHHhcCCCCCeeEEEecCCcc---------hHHHHHHHcCCceEEEechhh
Q 012744 87 QVMPGKLEGLIEEIHGREGEKTACLIADGAAG---------WAIEVAEKMKLRRAVVVITSA 139 (457)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~---------~~~~~A~~lgiP~v~~~~~~~ 139 (457)
..+......+...+. ..+|++|..-|.- .....|-..|||+++..+...
T Consensus 77 ~~La~A~~~l~~al~----~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~~~ 134 (159)
T PF10649_consen 77 GALAEASAALRRALA----EGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPPRN 134 (159)
T ss_pred HHHHHHHHHHHHHHh----cCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECHHH
Confidence 111111222222332 4799999986543 112234455999999776543
No 419
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=37.53 E-value=45 Score=30.61 Aligned_cols=29 Identities=10% Similarity=0.205 Sum_probs=23.9
Q ss_pred ccCCHHHHHHHHHHHhhcCCcEEEEEcCC
Q 012744 280 TVLEQNQFQELALGLEICNRSFLWVVRPD 308 (457)
Q Consensus 280 ~~~~~~~~~~~~~a~~~~~~~~i~~~~~~ 308 (457)
+..+.+..+.+.+|+.+...+.||...+.
T Consensus 44 a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG 72 (282)
T cd07025 44 AGTDEERAADLNAAFADPEIKAIWCARGG 72 (282)
T ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEcCCc
Confidence 34466778889999999999999998765
No 420
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=37.53 E-value=2.6e+02 Score=23.88 Aligned_cols=99 Identities=19% Similarity=0.221 Sum_probs=58.4
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEe---CC-cchh-HHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHH
Q 012744 5 HVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVN---SE-YNHK-RVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMR 79 (457)
Q Consensus 5 ~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~---~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (457)
=+.+++..+.|-....+.+|-+-.-+|.+|.++- .. .+.+ ..... .+.++.++..+++...... +..
T Consensus 30 li~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~------~~~~v~~~~~~~g~tw~~~--~~~ 101 (198)
T COG2109 30 LIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEK------FGLGVEFHGMGEGFTWETQ--DRE 101 (198)
T ss_pred eEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHh------hccceeEEecCCceeCCCc--CcH
Confidence 3677888888988888877777777887777764 22 2211 11111 1236888888866544321 111
Q ss_pred HHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcc
Q 012744 80 KLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAG 118 (457)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~ 118 (457)
.-. .......+...+.+.+ .++|+||.|...+
T Consensus 102 ~d~----~aa~~~w~~a~~~l~~---~~ydlviLDEl~~ 133 (198)
T COG2109 102 ADI----AAAKAGWEHAKEALAD---GKYDLVILDELNY 133 (198)
T ss_pred HHH----HHHHHHHHHHHHHHhC---CCCCEEEEehhhH
Confidence 111 2233344455555554 7999999997654
No 421
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.52 E-value=43 Score=30.19 Aligned_cols=54 Identities=13% Similarity=0.185 Sum_probs=37.1
Q ss_pred CCCccceeeccCcchhhhhhh-cCCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCCH
Q 012744 343 HPSISCFMSHCGWNSTTEGVS-NGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGDQ 418 (457)
Q Consensus 343 ~~~~~~~I~HgG~~s~~eal~-~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~~ 418 (457)
.+++ +|+=||-||+..++. +++|++.+-. . .+|... .++.+++.+++.++++..
T Consensus 41 ~~d~--vi~iGGDGT~L~a~~~~~~Pilgin~-------------G-~lGfl~------~~~~~~~~~~l~~~~~g~ 95 (256)
T PRK14075 41 TADL--IIVVGGDGTVLKAAKKVGTPLVGFKA-------------G-RLGFLS------SYTLEEIDRFLEDLKNWN 95 (256)
T ss_pred CCCE--EEEECCcHHHHHHHHHcCCCEEEEeC-------------C-CCcccc------ccCHHHHHHHHHHHHcCC
Confidence 3566 999999999999876 5777776521 1 233322 256788888888888653
No 422
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=37.49 E-value=93 Score=23.04 Aligned_cols=41 Identities=7% Similarity=0.274 Sum_probs=27.9
Q ss_pred CCCCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCc
Q 012744 1 MSSPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEY 41 (457)
Q Consensus 1 m~~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~ 41 (457)
|++.||++++..+.|--.-...+-+.+.++|.++.+-..+.
T Consensus 1 ~~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~ 41 (95)
T TIGR00853 1 MNETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSY 41 (95)
T ss_pred CCccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecH
Confidence 67789999998876422334566666777888877655533
No 423
>PRK04328 hypothetical protein; Provisional
Probab=37.32 E-value=2.5e+02 Score=25.12 Aligned_cols=43 Identities=21% Similarity=0.121 Sum_probs=29.9
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHH
Q 012744 5 HVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVL 47 (457)
Q Consensus 5 ~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~ 47 (457)
-+++.-.|+.|--.=...++.+-+++|+.+.+++.....+.+.
T Consensus 25 ~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~ 67 (249)
T PRK04328 25 VVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVR 67 (249)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHH
Confidence 3455556677876666666666557899999999877655444
No 424
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.86 E-value=40 Score=30.68 Aligned_cols=54 Identities=13% Similarity=0.224 Sum_probs=37.9
Q ss_pred CCCccceeeccCcchhhhhhh-cCCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCCH
Q 012744 343 HPSISCFMSHCGWNSTTEGVS-NGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGDQ 418 (457)
Q Consensus 343 ~~~~~~~I~HgG~~s~~eal~-~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~~ 418 (457)
.+++ +|+=||-||+..++. ..+|++.+ |. . .+|.. ..++.+++.++|.+++++.
T Consensus 52 ~~D~--vi~lGGDGT~L~a~~~~~~PilGI--------N~-----G-~lGFL------~~~~~~~~~~~l~~i~~g~ 106 (271)
T PRK01185 52 NADV--IITIGGDGTILRTLQRAKGPILGI--------NM-----G-GLGFL------TEIEIDEVGSAIKKLIRGE 106 (271)
T ss_pred CCCE--EEEEcCcHHHHHHHHHcCCCEEEE--------EC-----C-CCccC------cccCHHHHHHHHHHHHcCC
Confidence 4666 999999999999987 35576654 21 1 23322 2367899999999999764
No 425
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=36.80 E-value=2.8e+02 Score=30.45 Aligned_cols=28 Identities=14% Similarity=0.004 Sum_probs=22.9
Q ss_pred CCeeEEEecCCcchHHHHHHHcCCceEEEec
Q 012744 106 EKTACLIADGAAGWAIEVAEKMKLRRAVVVI 136 (457)
Q Consensus 106 ~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~ 136 (457)
.+||++|... -...+|+++|||++....
T Consensus 388 ~~pDLlig~~---~~~~~a~k~giP~~~~~~ 415 (917)
T PRK14477 388 KMPDLIVAGG---KTKFLALKTRTPFLDINH 415 (917)
T ss_pred cCCCEEEecC---chhhHHHHcCCCeEEccC
Confidence 7999999863 457789999999997653
No 426
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=36.61 E-value=55 Score=27.60 Aligned_cols=45 Identities=9% Similarity=0.257 Sum_probs=31.4
Q ss_pred CCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHH
Q 012744 3 SPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVL 47 (457)
Q Consensus 3 ~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~ 47 (457)
+..++|+-.++.|=-.=..++|+++.++|+.|.|++.+.....+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK 91 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence 346777777777777778899999999999999988766544443
No 427
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=36.47 E-value=1.5e+02 Score=25.94 Aligned_cols=44 Identities=23% Similarity=0.285 Sum_probs=30.9
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhh
Q 012744 6 VVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLES 49 (457)
Q Consensus 6 vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~ 49 (457)
+++.-.|+.|=-.-...++..-+++|+.|.+++.....+.+.+.
T Consensus 19 ~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~ 62 (224)
T TIGR03880 19 IVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGY 62 (224)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHH
Confidence 44455556677666677777666789999999988776655443
No 428
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=36.25 E-value=45 Score=29.05 Aligned_cols=110 Identities=15% Similarity=0.116 Sum_probs=59.0
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEeCCcc-hhHHHhhhcCCCCCCCCeEEEe-cCCCCCCCCCcchHHHHHHHHHHh--cc
Q 012744 15 GHVIPLLELSQNLAKHGLRITFVNSEYN-HKRVLESLEGKNYIGEQIHLVS-IPDGMEPWDDRSDMRKLLEKRLQV--MP 90 (457)
Q Consensus 15 GH~~p~~~la~~L~~~Gh~Vt~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~ 90 (457)
.|+...+.+...++.+|=.+.|+++... .+.++....++ .++.+.. +-.|+ ..+.......+... +.
T Consensus 92 ~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA~r~----~gy~~~~~w~~G~-----lTN~~~l~g~~~~~~~~~ 162 (251)
T KOG0832|consen 92 SYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERAARRA----GGYSHNRKWLGGL-----LTNARELFGALVRKFLSL 162 (251)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHHHHHh----cCceeeeeeccce-----eecchhhcccccccccCC
Confidence 6677888899999999999999987664 33443331100 1222211 11111 11111111111110 11
Q ss_pred hHHHHHHHHHhcCCCCCeeEEEe-cCCcc-hHHHHHHHcCCceEEEechhh
Q 012744 91 GKLEGLIEEIHGREGEKTACLIA-DGAAG-WAIEVAEKMKLRRAVVVITSA 139 (457)
Q Consensus 91 ~~~~~~~~~l~~~~~~~~D~vv~-D~~~~-~~~~~A~~lgiP~v~~~~~~~ 139 (457)
+...-++.. ..+|+||+ |.... .+..=|.+++||.|.+.-+-.
T Consensus 163 pd~~~f~~t------~~~D~vvvln~~e~~sAilEA~K~~IPTIgIVDtN~ 207 (251)
T KOG0832|consen 163 PDALCFLPT------LTPDLVVVLNPEENHSAILEAAKMAIPTIGIVDTNC 207 (251)
T ss_pred Ccceeeccc------CCcceeEecCcccccHHHHHHHHhCCCeEEEecCCC
Confidence 111122222 66788554 66555 777779999999999876654
No 429
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=36.04 E-value=2.4e+02 Score=23.04 Aligned_cols=142 Identities=12% Similarity=0.158 Sum_probs=80.3
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHhhcCCcEEEEEcCCCCCCCcCCCchhHHHHhcCCceeecCCCchhhccCCCcccee
Q 012744 271 VIYVAFGSHTVLEQNQFQELALGLEICNRSFLWVVRPDITNDANDAYPEGFRERVAARGQMISWSPQQKVLTHPSISCFM 350 (457)
Q Consensus 271 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I 350 (457)
.|-|-+||.+ +-+..+...+.|++.++.+-..+-+. ..-|+...+. +-. .....++.+|
T Consensus 4 ~V~IIMGS~S--D~~~mk~Aa~~L~~fgi~ye~~VvSA------HRTPe~m~~y----------a~~---a~~~g~~viI 62 (162)
T COG0041 4 KVGIIMGSKS--DWDTMKKAAEILEEFGVPYEVRVVSA------HRTPEKMFEY----------AEE---AEERGVKVII 62 (162)
T ss_pred eEEEEecCcc--hHHHHHHHHHHHHHcCCCeEEEEEec------cCCHHHHHHH----------HHH---HHHCCCeEEE
Confidence 4777788754 55667778888888888765444322 2344442221 100 0112233355
Q ss_pred eccCcc----hhhhhhhcCCceecccccc---chhhhHHhhhhhhceeEEeecc-CCCccCHHHHHHHHHHHhCCHHHHH
Q 012744 351 SHCGWN----STTEGVSNGVPFLCWPFFA---DQFMNTTYICDVWKVGLRLERN-QSGIIGREEIKNKVDQVLGDQNFKA 422 (457)
Q Consensus 351 ~HgG~~----s~~eal~~GvP~l~~P~~~---DQ~~na~~v~~~lG~g~~l~~~-~~~~~~~~~l~~~i~~~l~~~~~~~ 422 (457)
.-.|.. .+.. -.-=+|++.+|... +..+--.-+.+ +--|+-+..- -.+..++.-++..|-.+ .|+++++
T Consensus 63 AgAGgAAHLPGmvA-a~T~lPViGVPv~s~~L~GlDSL~SiVQ-MP~GvPVaTvaIg~a~NAallAa~ILa~-~d~~l~~ 139 (162)
T COG0041 63 AGAGGAAHLPGMVA-AKTPLPVIGVPVQSKALSGLDSLLSIVQ-MPAGVPVATVAIGNAANAALLAAQILAI-KDPELAE 139 (162)
T ss_pred ecCcchhhcchhhh-hcCCCCeEeccCccccccchHHHHHHhc-CCCCCeeEEEeecchhhHHHHHHHHHcC-CCHHHHH
Confidence 544421 1222 23368999999753 33344445555 5555543320 01335666666666444 5899999
Q ss_pred HHHHHHHHHHhhhh
Q 012744 423 RALKLKEKALSSVR 436 (457)
Q Consensus 423 ~a~~l~~~~~~~~~ 436 (457)
+..++++..++.+.
T Consensus 140 kl~~~r~~~~~~V~ 153 (162)
T COG0041 140 KLAEFREAQTEEVL 153 (162)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987653
No 430
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=35.94 E-value=2.6e+02 Score=26.53 Aligned_cols=97 Identities=18% Similarity=0.157 Sum_probs=53.1
Q ss_pred HHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHHHHHHHhcchHHHHHHHH
Q 012744 20 LLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLLEKRLQVMPGKLEGLIEE 99 (457)
Q Consensus 20 ~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (457)
...+.+.+.+.|.++.+++.+...+.+........ ...++.+..++.. .....++++++.
T Consensus 12 l~~l~~~~~~~~~~~liv~d~~~~~~~~~~l~~~L-~~~~~~~~~~~~~-------------------p~~~~v~~~~~~ 71 (347)
T cd08172 12 LDELGELLKRFGKRPLIVTGPRSWAAAKPYLPESL-AAGEAFVLRYDGE-------------------CSEENIERLAAQ 71 (347)
T ss_pred HHHHHHHHHHhCCeEEEEECHHHHHHHHHHHHHHH-hcCeEEEEEeCCC-------------------CCHHHHHHHHHH
Confidence 34455556555788888887654433322211100 0013443333322 111234455555
Q ss_pred HhcCCCCCeeEEEecCCcc---hHHHHHHHcCCceEEEechhh
Q 012744 100 IHGREGEKTACLIADGAAG---WAIEVAEKMKLRRAVVVITSA 139 (457)
Q Consensus 100 l~~~~~~~~D~vv~D~~~~---~~~~~A~~lgiP~v~~~~~~~ 139 (457)
+++ .++|+||.=.-.. .+..+|..+++|++.+-|+..
T Consensus 72 ~~~---~~~D~iIavGGGs~~D~aK~ia~~~~~p~i~VPTT~g 111 (347)
T cd08172 72 AKE---NGADVIIGIGGGKVLDTAKAVADRLGVPVITVPTLAA 111 (347)
T ss_pred HHh---cCCCEEEEeCCcHHHHHHHHHHHHhCCCEEEecCccc
Confidence 544 7889998654332 677777888999999876653
No 431
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=35.79 E-value=1e+02 Score=25.84 Aligned_cols=43 Identities=16% Similarity=0.170 Sum_probs=33.5
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHh
Q 012744 6 VVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLE 48 (457)
Q Consensus 6 vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~ 48 (457)
+++.-.|+.|=-.=...++...++.|..|.+++.....+.+.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~ 44 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIE 44 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHH
Confidence 4556667778888888888888899999999998776665543
No 432
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=35.69 E-value=43 Score=30.66 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=21.2
Q ss_pred HHHHHHHhCCCeEEEEeCCcchhHHHhh
Q 012744 22 ELSQNLAKHGLRITFVNSEYNHKRVLES 49 (457)
Q Consensus 22 ~la~~L~~~Gh~Vt~~~~~~~~~~~~~~ 49 (457)
.+|..|++.||+|+++.-....+.+.+.
T Consensus 5 ~~a~~L~~~G~~V~l~~r~~~~~~i~~~ 32 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARGEQLEALNQE 32 (293)
T ss_pred HHHHHHHhCCCcEEEEecHHHHHHHHHC
Confidence 4788999999999999976444455544
No 433
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=35.68 E-value=55 Score=33.04 Aligned_cols=27 Identities=4% Similarity=0.222 Sum_probs=22.9
Q ss_pred CCeeEEEecCCcchHHHHHHHcCCceEEEe
Q 012744 106 EKTACLIADGAAGWAIEVAEKMKLRRAVVV 135 (457)
Q Consensus 106 ~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~ 135 (457)
.+||+|+.+. ....+|+++|||++.++
T Consensus 373 ~~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 373 VEPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred cCCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 7899999995 56667899999998865
No 434
>PRK03094 hypothetical protein; Provisional
Probab=35.68 E-value=35 Score=24.30 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=16.7
Q ss_pred HHHHHHHHHhCCCeEEEEeC
Q 012744 20 LLELSQNLAKHGLRITFVNS 39 (457)
Q Consensus 20 ~~~la~~L~~~Gh~Vt~~~~ 39 (457)
+-.|.+.|+++||+|.=+..
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred cHHHHHHHHHCCCEEEecCc
Confidence 45689999999999987754
No 435
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=35.58 E-value=64 Score=29.19 Aligned_cols=37 Identities=22% Similarity=0.225 Sum_probs=31.3
Q ss_pred CEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCC
Q 012744 4 PHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSE 40 (457)
Q Consensus 4 ~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~ 40 (457)
|.|.+..=|+-|--.-...||..|+++|++|.++=..
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 4577776677799999999999999999999988543
No 436
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=35.00 E-value=3.3e+02 Score=27.25 Aligned_cols=77 Identities=9% Similarity=0.038 Sum_probs=49.9
Q ss_pred CeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcCCCCCeeEE
Q 012744 32 LRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLLEKRLQVMPGKLEGLIEEIHGREGEKTACL 111 (457)
Q Consensus 32 h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~v 111 (457)
.+..+.+++.+....+.+ |++...+-...+.. ....+.+.++++.+++ .+.++|
T Consensus 371 ~r~vvt~H~af~YLa~~Y---------GL~~~~~~~~~~~~--------------ePS~~~L~~Li~~IK~---~~V~~I 424 (479)
T TIGR03772 371 RRHLITTHDAYSYLGQAY---------GLNIAGFVTPNPAV--------------EPSLADRRRLTRTIEN---LKVPAV 424 (479)
T ss_pred CCEEEEECCcHHHHHHHC---------CCeEEeeeccCCCC--------------CCCHHHHHHHHHHHHH---cCCCEE
Confidence 356666777777777777 66655432111111 1112345566666666 899999
Q ss_pred EecCCcc----hHHHHHHHcCCceEEE
Q 012744 112 IADGAAG----WAIEVAEKMKLRRAVV 134 (457)
Q Consensus 112 v~D~~~~----~~~~~A~~lgiP~v~~ 134 (457)
+++.... .+..+|+..|+|.+.+
T Consensus 425 F~Epq~~~~~~~l~~IA~e~Gv~V~~l 451 (479)
T TIGR03772 425 FLEPNLAARSTTLNEIADELGVRVCAI 451 (479)
T ss_pred EEeCCCCCchHHHHHHHHHcCCcEEee
Confidence 9998775 2678999999998765
No 437
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=34.98 E-value=3.4e+02 Score=29.06 Aligned_cols=152 Identities=15% Similarity=0.209 Sum_probs=89.7
Q ss_pred eEEEEEeCCcccCCHHHHHHHHHHHhhcCCcEEEEEcCCCCC--------C----------------CcCCCchhHHHHh
Q 012744 270 SVIYVAFGSHTVLEQNQFQELALGLEICNRSFLWVVRPDITN--------D----------------ANDAYPEGFRERV 325 (457)
Q Consensus 270 ~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~--------~----------------~~~~~~~~~~~~~ 325 (457)
..+|+++=.+...+.......++.|.+.|.+++.+++..... + +...+++.-....
T Consensus 572 ~LtFvGlVGi~DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~ 651 (972)
T KOG0202|consen 572 DLTFVGLVGILDPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIFSEDEDVSSMALTGSEFDDLSDEELDDA 651 (972)
T ss_pred ceEEEEEeeccCCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCCcCCccccccccchhhhhcCCHHHHHHH
Confidence 388888877666777888889999999999999998865100 0 0111222212222
Q ss_pred cCCceee-cCCCchhhccCCCccceeeccCcchhhhhhhcCCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCH
Q 012744 326 AARGQMI-SWSPQQKVLTHPSISCFMSHCGWNSTTEGVSNGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGR 404 (457)
Q Consensus 326 ~~nv~~~-~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~ 404 (457)
..++.+. +--||.. --+.|+|..-.=.+ -..+|.-.-|=.+..+ .+|+.... --.
T Consensus 652 ~~~~~vFaR~~P~HK----------------~kIVeaLq~~geiv--AMTGDGVNDApALK~A-dIGIAMG~-----~GT 707 (972)
T KOG0202|consen 652 VRRVLVFARAEPQHK----------------LKIVEALQSRGEVV--AMTGDGVNDAPALKKA-DIGIAMGI-----SGT 707 (972)
T ss_pred hhcceEEEecCchhH----------------HHHHHHHHhcCCEE--EecCCCccchhhhhhc-ccceeecC-----Ccc
Confidence 3333333 2223321 12445554444433 3356666666666764 77877742 223
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHh
Q 012744 405 EEIKNKVDQVLGDQNFKARALKLKEKALSSVREGGSSNKAIQNFVQSIK 453 (457)
Q Consensus 405 ~~l~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 453 (457)
+--++|-+=+|.|+.|.. +-+|++||-+-..++..||++++
T Consensus 708 dVaKeAsDMVL~DDnFst--------IvaAVEEGr~IynNik~Fir~~l 748 (972)
T KOG0202|consen 708 DVAKEASDMVLADDNFST--------IVAAVEEGRAIYNNIKNFIRYLL 748 (972)
T ss_pred HhhHhhhhcEEecCcHHH--------HHHHHHHhHHHHHHHHHHHHHHH
Confidence 334556666777876644 33466677788888888988875
No 438
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=34.88 E-value=1.3e+02 Score=23.20 Aligned_cols=39 Identities=15% Similarity=0.156 Sum_probs=31.5
Q ss_pred CCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhh
Q 012744 11 NPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLES 49 (457)
Q Consensus 11 ~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~ 49 (457)
+...|+-..++.+++.++++|..|..+|.....+..+..
T Consensus 60 is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~a 98 (131)
T PF01380_consen 60 ISYSGETRELIELLRFAKERGAPVILITSNSESPLARLA 98 (131)
T ss_dssp EESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHS
T ss_pred eeccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhhC
Confidence 336678899999999999999999999987776665544
No 439
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=34.76 E-value=3.7e+02 Score=25.30 Aligned_cols=116 Identities=17% Similarity=0.174 Sum_probs=60.0
Q ss_pred EEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHHHHHH
Q 012744 7 VVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLLEKRL 86 (457)
Q Consensus 7 l~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (457)
+++...-.|.-.-.+..++.++++|..|..+|........... .+..+..+|.+.........+...+...+
T Consensus 81 lvI~iS~SG~T~e~~~a~~~a~~~ga~vIaIT~~~~L~~~a~~--------~~~~~i~ip~~~~~r~s~~~ll~~l~~~l 152 (337)
T PRK08674 81 LVIAVSYSGNTEETLSAVEQALKRGAKIIAITSGGKLKEMAKE--------HGLPVIIVPGGYQPRAALGYLFTPLLKIL 152 (337)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCCCeEEEECCCchHHHHHHh--------cCCeEEEeCCCCcchhhHHHHHHHHHHHH
Confidence 3444445677778888899999999999888864322221111 25667777765543322122222222222
Q ss_pred Hhc------chHHHHHHHHHhcCC-CCCeeEEEecCCcchHHHHHHHcC--CceEE
Q 012744 87 QVM------PGKLEGLIEEIHGRE-GEKTACLIADGAAGWAIEVAEKMK--LRRAV 133 (457)
Q Consensus 87 ~~~------~~~~~~~~~~l~~~~-~~~~D~vv~D~~~~~~~~~A~~lg--iP~v~ 133 (457)
... ...++++++.+++.. ...++ .+.+...+..+|.+++ +|++.
T Consensus 153 ~~~Gl~~~~~~d~~~~~~~l~~~~~~~~~~---~~~~~~~A~~lA~~~~~~~pv~~ 205 (337)
T PRK08674 153 EKLGLIPDKSAEVLETKIVLSELAEGLKEK---VPTLKNLAKRLAGKLYGRIPVIY 205 (337)
T ss_pred HHcCCCccchhhHHHHHHHHHHHHHhhCcC---CCcccCHHHHHHHHHhCCCCEEE
Confidence 110 114455555444310 01111 1234456667777775 78777
No 440
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=34.73 E-value=2e+02 Score=26.54 Aligned_cols=38 Identities=21% Similarity=0.384 Sum_probs=30.4
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012744 5 HVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYN 42 (457)
Q Consensus 5 ~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~ 42 (457)
.+.|.-.++.|=-.-+..|+..|.++|+.|.++.....
T Consensus 36 ~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~ 73 (300)
T TIGR00750 36 RVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPS 73 (300)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 44555566778888899999999999999999886543
No 441
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.65 E-value=53 Score=30.02 Aligned_cols=54 Identities=13% Similarity=0.110 Sum_probs=35.5
Q ss_pred CCCccceeeccCcchhhhhhh---cCCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCCH
Q 012744 343 HPSISCFMSHCGWNSTTEGVS---NGVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGDQ 418 (457)
Q Consensus 343 ~~~~~~~I~HgG~~s~~eal~---~GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~~ 418 (457)
.+++ +|.-||-||+.+++. .++|++.++... + |.. ..+..+++.+++.+++++.
T Consensus 57 ~~d~--vi~iGGDGTlL~a~~~~~~~~pi~gIn~G~------------l--GFl------~~~~~~~~~~~l~~i~~g~ 113 (277)
T PRK03708 57 DVDF--IIAIGGDGTILRIEHKTKKDIPILGINMGT------------L--GFL------TEVEPEETFFALSRLLEGD 113 (277)
T ss_pred CCCE--EEEEeCcHHHHHHHHhcCCCCeEEEEeCCC------------C--Ccc------ccCCHHHHHHHHHHHHcCC
Confidence 3556 999999999998874 356777775421 1 211 1245677778887777553
No 442
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=34.51 E-value=61 Score=26.83 Aligned_cols=51 Identities=20% Similarity=0.278 Sum_probs=34.4
Q ss_pred CCCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcc--hhHHHhhhcCCCCCCCCeEEEecC
Q 012744 2 SSPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYN--HKRVLESLEGKNYIGEQIHLVSIP 66 (457)
Q Consensus 2 ~~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 66 (457)
+.++|.++-+|++||.. |.-|++.|++|++...+.. .+..++. |++..++.
T Consensus 3 ~~k~IAViGyGsQG~a~-----AlNLrDSG~~V~Vglr~~s~s~~~A~~~---------Gf~v~~~~ 55 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAH-----ALNLRDSGVNVIVGLREGSASWEKAKAD---------GFEVMSVA 55 (165)
T ss_dssp CTSEEEEES-SHHHHHH-----HHHHHHCC-EEEEEE-TTCHHHHHHHHT---------T-ECCEHH
T ss_pred CCCEEEEECCChHHHHH-----HHHHHhCCCCEEEEecCCCcCHHHHHHC---------CCeeccHH
Confidence 35789999999999864 7789999999999886654 3344443 77655544
No 443
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=34.49 E-value=60 Score=32.78 Aligned_cols=28 Identities=7% Similarity=0.140 Sum_probs=23.5
Q ss_pred CCeeEEEecCCcchHHHHHHHcCCceEEEec
Q 012744 106 EKTACLIADGAAGWAIEVAEKMKLRRAVVVI 136 (457)
Q Consensus 106 ~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~ 136 (457)
.+||+||.+. ....+|+++|+|++.++.
T Consensus 363 ~~pdliiG~~---~er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 363 LEPELVLGTQ---MERHSAKRLDIPCGVISA 390 (511)
T ss_pred cCCCEEEECh---HHHHHHHHcCCCEEEecC
Confidence 7899999995 667789999999988643
No 444
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=34.02 E-value=2.8e+02 Score=24.45 Aligned_cols=44 Identities=20% Similarity=0.117 Sum_probs=31.8
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHh
Q 012744 5 HVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLE 48 (457)
Q Consensus 5 ~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~ 48 (457)
-+++.-.|+.|--.=...++.+-+++|..|.|++.....+.+.+
T Consensus 23 ~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~ 66 (237)
T TIGR03877 23 VVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRR 66 (237)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHH
Confidence 34556667778777777777665588999999998776655443
No 445
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=34.01 E-value=53 Score=22.43 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=17.9
Q ss_pred HHHHHHHHhCCCeEEEEeCCcc
Q 012744 21 LELSQNLAKHGLRITFVNSEYN 42 (457)
Q Consensus 21 ~~la~~L~~~Gh~Vt~~~~~~~ 42 (457)
+..|..|+++|++|+++-....
T Consensus 9 l~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESSSS
T ss_pred HHHHHHHHHCCCcEEEEecCcc
Confidence 5678899999999999976543
No 446
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=33.79 E-value=33 Score=36.20 Aligned_cols=80 Identities=14% Similarity=0.137 Sum_probs=60.8
Q ss_pred CCCCeEEEecCCCCCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEEEe
Q 012744 56 IGEQIHLVSIPDGMEPWDDRSDMRKLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAVVV 135 (457)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~ 135 (457)
..+.++|-.+|.+-.+.....++.++.+.+.+..++.+++.++.++. .+-|..|+|. ..--+.+.+--|+..+.+-
T Consensus 685 q~PpFRFGTVpngSTE~niR~Nyp~MHeYM~kyNq~~v~dal~sLK~---gKLDAFIyDa-AVLnY~agkDegCKLvTIG 760 (1258)
T KOG1053|consen 685 QYPPFRFGTVPNGSTERNIRSNYPEMHEYMVKYNQPGVEDALESLKN---GKLDAFIYDA-AVLNYMAGKDEGCKLVTIG 760 (1258)
T ss_pred cCCCcccccCCCCchhhhHHhccHHHHHHHHHhccCchHHHHHHHhc---ccchhHHHHH-HHHHHhhccCCCceEEEec
Confidence 33567777777666555566777888888888888999999999999 8999999994 3345566677789988887
Q ss_pred chhh
Q 012744 136 ITSA 139 (457)
Q Consensus 136 ~~~~ 139 (457)
++-.
T Consensus 761 sgKv 764 (1258)
T KOG1053|consen 761 SGKV 764 (1258)
T ss_pred CCce
Confidence 5443
No 447
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=33.73 E-value=92 Score=25.85 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=31.7
Q ss_pred chHHHHHHHHHhcCCCCCeeEEEecCCcc-hHHHHHHHcCCceEE
Q 012744 90 PGKLEGLIEEIHGREGEKTACLIADGAAG-WAIEVAEKMKLRRAV 133 (457)
Q Consensus 90 ~~~~~~~~~~l~~~~~~~~D~vv~D~~~~-~~~~~A~~lgiP~v~ 133 (457)
.+.+++++..++. ...-++|+..... -...+++.+|||++.
T Consensus 48 tpe~~~W~~e~k~---~gi~v~vvSNn~e~RV~~~~~~l~v~fi~ 89 (175)
T COG2179 48 TPELRAWLAELKE---AGIKVVVVSNNKESRVARAAEKLGVPFIY 89 (175)
T ss_pred CHHHHHHHHHHHh---cCCEEEEEeCCCHHHHHhhhhhcCCceee
Confidence 4678888888887 5677777766444 667789999999998
No 448
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=33.69 E-value=57 Score=30.39 Aligned_cols=28 Identities=7% Similarity=-0.070 Sum_probs=22.9
Q ss_pred cCCHHHHHHHHHHHhhcCCcEEEEEcCC
Q 012744 281 VLEQNQFQELALGLEICNRSFLWVVRPD 308 (457)
Q Consensus 281 ~~~~~~~~~~~~a~~~~~~~~i~~~~~~ 308 (457)
..+.+....+.+++.+...+.||...+.
T Consensus 49 g~~~~Ra~dL~~a~~Dp~i~aI~~~rGG 76 (308)
T cd07062 49 ASPEERAEELMAAFADPSIKAIIPTIGG 76 (308)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEECCcc
Confidence 3456778889999999999999998764
No 449
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=33.57 E-value=2.9e+02 Score=25.38 Aligned_cols=75 Identities=12% Similarity=0.044 Sum_probs=46.7
Q ss_pred eEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEE
Q 012744 33 RITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLLEKRLQVMPGKLEGLIEEIHGREGEKTACLI 112 (457)
Q Consensus 33 ~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv 112 (457)
...+..++.+....+.+ |++...+-...+..+ ...+.+.++++.+++ .+..+|+
T Consensus 178 ~~~v~~H~af~Y~~~~y---------Gl~~~~~~~~~~~~e--------------ps~~~l~~l~~~ik~---~~v~~if 231 (287)
T cd01137 178 RKLVTSEGAFSYFAKAY---------GLKEAYLWPINTEEE--------------GTPKQVATLIEQVKK---EKVPAVF 231 (287)
T ss_pred CEEEEecccHHHHHHHc---------CCeEeecccCCCCCC--------------CCHHHHHHHHHHHHH---hCCCEEE
Confidence 44555666777777766 677655421111111 112345556666665 7899999
Q ss_pred ecCCcc--hHHHHHHHcCCceEE
Q 012744 113 ADGAAG--WAIEVAEKMKLRRAV 133 (457)
Q Consensus 113 ~D~~~~--~~~~~A~~lgiP~v~ 133 (457)
++.... .+..+|+..|+|.+.
T Consensus 232 ~e~~~~~~~~~~ia~~~gv~v~~ 254 (287)
T cd01137 232 VESTVNDRLMKQVAKETGAKIGG 254 (287)
T ss_pred EeCCCChHHHHHHHHHhCCcccc
Confidence 998766 567899999999643
No 450
>PRK06180 short chain dehydrogenase; Provisional
Probab=33.45 E-value=82 Score=28.54 Aligned_cols=37 Identities=22% Similarity=0.096 Sum_probs=24.2
Q ss_pred CCCCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCC
Q 012744 1 MSSPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSE 40 (457)
Q Consensus 1 m~~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~ 40 (457)
|...+.++++. +.|.+ =..+++.|+++||+|+.+...
T Consensus 1 ~~~~~~vlVtG-asggi--G~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 1 MSSMKTWLITG-VSSGF--GRALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred CCCCCEEEEec-CCChH--HHHHHHHHHhCcCEEEEEeCC
Confidence 44444444444 34444 356788999999999988754
No 451
>PLN02240 UDP-glucose 4-epimerase
Probab=33.37 E-value=68 Score=30.28 Aligned_cols=34 Identities=12% Similarity=0.229 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeC
Q 012744 2 SSPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNS 39 (457)
Q Consensus 2 ~~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~ 39 (457)
..++|++ .|+.|.+-. .|++.|.++||+|+.+..
T Consensus 4 ~~~~vlI--tGatG~iG~--~l~~~L~~~g~~V~~~~~ 37 (352)
T PLN02240 4 MGRTILV--TGGAGYIGS--HTVLQLLLAGYKVVVIDN 37 (352)
T ss_pred CCCEEEE--ECCCChHHH--HHHHHHHHCCCEEEEEeC
Confidence 3455554 356666643 567899999999999863
No 452
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=33.31 E-value=81 Score=29.06 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=33.5
Q ss_pred CEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012744 4 PHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYN 42 (457)
Q Consensus 4 ~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~ 42 (457)
||++|.-=|+.|=-.-...||..|+++|++|.++-....
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ 39 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPK 39 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 458888888889999999999999999999998865443
No 453
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.19 E-value=73 Score=31.33 Aligned_cols=45 Identities=11% Similarity=0.154 Sum_probs=37.2
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhh
Q 012744 5 HVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLES 49 (457)
Q Consensus 5 ~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~ 49 (457)
-|.|+-.-+-|--.-+..||-.|.+.+|+|.++....|+....+.
T Consensus 380 Vi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQ 424 (587)
T KOG0781|consen 380 VISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQ 424 (587)
T ss_pred EEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHH
Confidence 456677778899999999999999999999999988887655443
No 454
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=33.11 E-value=82 Score=26.85 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=24.9
Q ss_pred eEEEecCCcc-hHHHHHHHcCCceEEEechhh
Q 012744 109 ACLIADGAAG-WAIEVAEKMKLRRAVVVITSA 139 (457)
Q Consensus 109 D~vv~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 139 (457)
.++|...+.. +|..+|+++|+|.|.+.|+..
T Consensus 61 ~~liGSSlGG~~A~~La~~~~~~avLiNPav~ 92 (187)
T PF05728_consen 61 VVLIGSSLGGFYATYLAERYGLPAVLINPAVR 92 (187)
T ss_pred eEEEEEChHHHHHHHHHHHhCCCEEEEcCCCC
Confidence 4777777665 888999999999998877654
No 455
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=32.86 E-value=2.2e+02 Score=27.05 Aligned_cols=46 Identities=11% Similarity=-0.023 Sum_probs=35.4
Q ss_pred hHHhccCCCCeEEEEEeCCcccCCHHHHHHHHHHHhhcCCcEEEEEcCC
Q 012744 260 LEWLDQRQANSVIYVAFGSHTVLEQNQFQELALGLEICNRSFLWVVRPD 308 (457)
Q Consensus 260 ~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~ 308 (457)
..|+..++ +++.|.+.......+....+++.+.+.+...+++.+++
T Consensus 59 ~~~~~~GG---T~lgssR~~~~~~~e~~~~~~~~l~~~gId~LvvIGGD 104 (347)
T COG0205 59 DDLINRGG---TFLGSARFPEFKTEEGRKVAAENLKKLGIDALVVIGGD 104 (347)
T ss_pred hHHHhcCC---eEEeeCCCCCcccHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 35665544 78888777666667778889999999999999988876
No 456
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=32.82 E-value=2.8e+02 Score=26.55 Aligned_cols=93 Identities=17% Similarity=0.155 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCcchhH----HHhhhcCCCCCCCCeE--EEecCCCCCCCCCcchHHHHHHHHHHhcchH
Q 012744 19 PLLELSQNLAKHGLRITFVNSEYNHKR----VLESLEGKNYIGEQIH--LVSIPDGMEPWDDRSDMRKLLEKRLQVMPGK 92 (457)
Q Consensus 19 p~~~la~~L~~~Gh~Vt~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (457)
..-.+++.|.+.|.++.+++.+...+. +..... . .++. |..++ .. .. ...
T Consensus 17 ~~~~l~~~l~~~g~~~livtd~~~~~~~~~~v~~~l~---~--~~~~~~~~~~~----~e-p~--------------~~~ 72 (366)
T PRK09423 17 ALARLGEYLKPLGKRALVIADEFVLGIVGDRVEASLK---E--AGLTVVFEVFN----GE-CS--------------DNE 72 (366)
T ss_pred HHHHHHHHHHHcCCEEEEEEChhHHHHHHHHHHHHHH---h--CCCeEEEEEeC----CC-CC--------------HHH
Confidence 456677788877888888886553322 221111 0 1333 22222 11 11 013
Q ss_pred HHHHHHHHhcCCCCCeeEEEecCCcc---hHHHHHHHcCCceEEEechh
Q 012744 93 LEGLIEEIHGREGEKTACLIADGAAG---WAIEVAEKMKLRRAVVVITS 138 (457)
Q Consensus 93 ~~~~~~~l~~~~~~~~D~vv~D~~~~---~~~~~A~~lgiP~v~~~~~~ 138 (457)
++++++.+++ .++|+||.=.-.. .+..+|..+++|++.+-|..
T Consensus 73 v~~~~~~~~~---~~~d~IIavGGGsv~D~aK~iA~~~~~p~i~IPTta 118 (366)
T PRK09423 73 IDRLVAIAEE---NGCDVVIGIGGGKTLDTAKAVADYLGVPVVIVPTIA 118 (366)
T ss_pred HHHHHHHHHh---cCCCEEEEecChHHHHHHHHHHHHcCCCEEEeCCcc
Confidence 3444454444 7889999765433 66777788899999987654
No 457
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=32.82 E-value=66 Score=32.56 Aligned_cols=27 Identities=11% Similarity=0.174 Sum_probs=22.8
Q ss_pred CCeeEEEecCCcchHHHHHHHcCCceEEEe
Q 012744 106 EKTACLIADGAAGWAIEVAEKMKLRRAVVV 135 (457)
Q Consensus 106 ~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~ 135 (457)
.+||+||.+. ....+|+++|||++.++
T Consensus 361 ~~PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 361 AAPELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred cCCCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 7899999884 56778999999998864
No 458
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=32.76 E-value=61 Score=27.91 Aligned_cols=32 Identities=19% Similarity=0.325 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEe
Q 012744 2 SSPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVN 38 (457)
Q Consensus 2 ~~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~ 38 (457)
+.+++++.-+|..| ..+|+.|.+.||+|++..
T Consensus 27 ~gk~v~I~G~G~vG-----~~~A~~L~~~G~~Vvv~D 58 (200)
T cd01075 27 EGKTVAVQGLGKVG-----YKLAEHLLEEGAKLIVAD 58 (200)
T ss_pred CCCEEEEECCCHHH-----HHHHHHHHHCCCEEEEEc
Confidence 35678887776444 568999999999999543
No 459
>PRK07308 flavodoxin; Validated
Probab=32.66 E-value=86 Score=25.24 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=28.1
Q ss_pred CCCCEEEEEcCCCCcChHH-HHHHHHHHHhCCCeEEEEeCC
Q 012744 1 MSSPHVVVIPNPEQGHVIP-LLELSQNLAKHGLRITFVNSE 40 (457)
Q Consensus 1 m~~~~vl~~~~~~~GH~~p-~~~la~~L~~~Gh~Vt~~~~~ 40 (457)
|++.+|++.+ .+||.-- .-.|++.|.+.|++|.+....
T Consensus 1 m~~~~IvY~S--~tGnTe~iA~~ia~~l~~~g~~~~~~~~~ 39 (146)
T PRK07308 1 MALAKIVYAS--MTGNTEEIADIVADKLRELGHDVDVDECT 39 (146)
T ss_pred CceEEEEEEC--CCchHHHHHHHHHHHHHhCCCceEEEecc
Confidence 7777777655 6677776 556788898899998876543
No 460
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=32.66 E-value=3.4e+02 Score=25.62 Aligned_cols=103 Identities=18% Similarity=0.237 Sum_probs=57.6
Q ss_pred CEEEEEcCCCCc---ChH--HHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchH
Q 012744 4 PHVVVIPNPEQG---HVI--PLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDM 78 (457)
Q Consensus 4 ~~vl~~~~~~~G---H~~--p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (457)
.-|+|.|..+.| +|- -+..|++.|.++|++|.+++.+...+...+... . .+......
T Consensus 181 ~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~-------~-----~~~~~~~~------ 242 (348)
T PRK10916 181 PIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEILA-------A-----LNTEQQAW------ 242 (348)
T ss_pred CEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHH-------h-----cccccccc------
Confidence 345566643222 232 478999999888999999888766554443210 0 00000000
Q ss_pred HHHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEEEec
Q 012744 79 RKLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAVVVI 136 (457)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~~ 136 (457)
+..+. -...+.++...+. +-|++|+.. .....+|..+|+|.+.++.
T Consensus 243 ---~~~l~--g~~sL~el~ali~-----~a~l~I~nD--TGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 243 ---CRNLA--GETQLEQAVILIA-----ACKAIVTND--SGLMHVAAALNRPLVALYG 288 (348)
T ss_pred ---eeecc--CCCCHHHHHHHHH-----hCCEEEecC--ChHHHHHHHhCCCEEEEEC
Confidence 00000 0113444444442 358888764 3578899999999999865
No 461
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=32.55 E-value=64 Score=31.53 Aligned_cols=35 Identities=23% Similarity=0.159 Sum_probs=27.4
Q ss_pred CCCCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCC
Q 012744 1 MSSPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSE 40 (457)
Q Consensus 1 m~~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~ 40 (457)
|+.+||.|+-.|-.| ..+|..|+++||+|+.+-..
T Consensus 1 m~~~kI~VIGlG~~G-----~~~A~~La~~G~~V~~~D~~ 35 (415)
T PRK11064 1 MSFETISVIGLGYIG-----LPTAAAFASRQKQVIGVDIN 35 (415)
T ss_pred CCccEEEEECcchhh-----HHHHHHHHhCCCEEEEEeCC
Confidence 777888888665555 46889999999999988653
No 462
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=32.30 E-value=1.1e+02 Score=23.62 Aligned_cols=37 Identities=14% Similarity=0.208 Sum_probs=32.1
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCc
Q 012744 5 HVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEY 41 (457)
Q Consensus 5 ~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~ 41 (457)
|+++..-|+.|=-.....+++.|+++|.+|.++....
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4677888888999999999999999999999888655
No 463
>PF10820 DUF2543: Protein of unknown function (DUF2543); InterPro: IPR020251 This entry contains proteins with no known function.
Probab=32.20 E-value=1.5e+02 Score=20.31 Aligned_cols=43 Identities=16% Similarity=0.407 Sum_probs=31.2
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCC
Q 012744 408 KNKVDQVLGDQNFKARALKLKEKALSSVREGGSSNKAIQNFVQSIKQWP 456 (457)
Q Consensus 408 ~~~i~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 456 (457)
.--|.++++|+++.+.|++ .+.. +.|-....++++...|.+|+
T Consensus 37 QlLitRLmnneeIsEeaQ~---EMA~---eAgi~~~rID~IA~fLNqWG 79 (81)
T PF10820_consen 37 QLLITRLMNNEEISEEAQQ---EMAS---EAGIDEQRIDDIANFLNQWG 79 (81)
T ss_pred HHHHHHHhccHhhhHHHHH---HHHH---HcCCcHHHHHHHHHHHHHhc
Confidence 4457788888887776653 3332 35888899999999988875
No 464
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=32.01 E-value=2.6e+02 Score=27.58 Aligned_cols=31 Identities=10% Similarity=0.194 Sum_probs=24.4
Q ss_pred CEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeC
Q 012744 4 PHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNS 39 (457)
Q Consensus 4 ~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~ 39 (457)
+||+++-.|++.| +|++.|++.|++|.++..
T Consensus 3 ~kVLvlG~G~re~-----al~~~l~~~g~~v~~~~~ 33 (435)
T PRK06395 3 MKVMLVGSGGRED-----AIARAIKRSGAILFSVIG 33 (435)
T ss_pred eEEEEECCcHHHH-----HHHHHHHhCCCeEEEEEC
Confidence 6899987777666 578889888988887744
No 465
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=31.99 E-value=42 Score=23.97 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=18.5
Q ss_pred HHHHHHHHHhCCCeEEEEeCCc
Q 012744 20 LLELSQNLAKHGLRITFVNSEY 41 (457)
Q Consensus 20 ~~~la~~L~~~Gh~Vt~~~~~~ 41 (457)
+-.+.+.|.++||+|+=+....
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~~ 31 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENEQ 31 (80)
T ss_pred chHHHHHHHHCCCEEEecCCcc
Confidence 4578999999999999887654
No 466
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=31.95 E-value=1.9e+02 Score=28.96 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=25.8
Q ss_pred CEEEEEcCCCCcChHHHHHHHHHHHhC--CCeEEEEeCCcc
Q 012744 4 PHVVVIPNPEQGHVIPLLELSQNLAKH--GLRITFVNSEYN 42 (457)
Q Consensus 4 ~~vl~~~~~~~GH~~p~~~la~~L~~~--Gh~Vt~~~~~~~ 42 (457)
|||+++-.|++.| +|+++|++. |++|.++..+.+
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g~~N 36 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSSYLN 36 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEECCCC
Confidence 5899988888777 578888776 999988855343
No 467
>PRK06128 oxidoreductase; Provisional
Probab=31.88 E-value=2.6e+02 Score=25.61 Aligned_cols=32 Identities=13% Similarity=0.156 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeC
Q 012744 5 HVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNS 39 (457)
Q Consensus 5 ~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~ 39 (457)
|.++++.++ |-+- ..+|+.|+++|++|++...
T Consensus 56 k~vlITGas-~gIG--~~~a~~l~~~G~~V~i~~~ 87 (300)
T PRK06128 56 RKALITGAD-SGIG--RATAIAFAREGADIALNYL 87 (300)
T ss_pred CEEEEecCC-CcHH--HHHHHHHHHcCCEEEEEeC
Confidence 445555443 3332 5789999999999987654
No 468
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=31.78 E-value=6.6e+02 Score=26.79 Aligned_cols=39 Identities=13% Similarity=0.388 Sum_probs=29.8
Q ss_pred CEEEEEcCC--CCcChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012744 4 PHVVVIPNP--EQGHVIPLLELSQNLAKHGLRITFVNSEYN 42 (457)
Q Consensus 4 ~~vl~~~~~--~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~ 42 (457)
.|++.++.. +.|=-.-...||..|+..|++|.++-....
T Consensus 531 ~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r 571 (726)
T PRK09841 531 NNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLR 571 (726)
T ss_pred CeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 456555543 557788899999999999999999965443
No 469
>PRK06179 short chain dehydrogenase; Provisional
Probab=31.60 E-value=85 Score=28.19 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=25.4
Q ss_pred CCCCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCC
Q 012744 1 MSSPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSE 40 (457)
Q Consensus 1 m~~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~ 40 (457)
|.+.+.++++.+ .|-+- ..++++|+++|++|+.++-.
T Consensus 1 m~~~~~vlVtGa-sg~iG--~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 1 MSNSKVALVTGA-SSGIG--RATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred CCCCCEEEEecC-CCHHH--HHHHHHHHHCCCEEEEEeCC
Confidence 554455555554 34443 57899999999999887753
No 470
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.39 E-value=66 Score=29.18 Aligned_cols=54 Identities=9% Similarity=0.127 Sum_probs=36.7
Q ss_pred CCccceeeccCcchhhhhhhc-----CCceeccccccchhhhHHhhhhhhceeEEeeccCCCccCHHHHHHHHHHHhCCH
Q 012744 344 PSISCFMSHCGWNSTTEGVSN-----GVPFLCWPFFADQFMNTTYICDVWKVGLRLERNQSGIIGREEIKNKVDQVLGDQ 418 (457)
Q Consensus 344 ~~~~~~I~HgG~~s~~eal~~-----GvP~l~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~~~~~l~~~i~~~l~~~ 418 (457)
+++ +|+=||-||+..++.. .+|.+.+-.. . .+|.. ..++.+++.+++.++++++
T Consensus 40 ~D~--vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~------------G-~lGFL------~~~~~~~~~~~l~~i~~g~ 98 (264)
T PRK03501 40 ANI--IVSIGGDGTFLQAVRKTGFREDCLYAGISTK------------D-QLGFY------CDFHIDDLDKMIQAITKEE 98 (264)
T ss_pred ccE--EEEECCcHHHHHHHHHhcccCCCeEEeEecC------------C-CCeEc------ccCCHHHHHHHHHHHHcCC
Confidence 566 9999999999999874 5566544220 0 22322 2357788999999988654
No 471
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=31.37 E-value=80 Score=19.58 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHHhCC-HHHHHHHHH
Q 012744 403 GREEIKNKVDQVLGD-QNFKARALK 426 (457)
Q Consensus 403 ~~~~l~~~i~~~l~~-~~~~~~a~~ 426 (457)
+.++|.+||..+.++ -++++.|++
T Consensus 1 tee~l~~Ai~~v~~g~~S~r~AA~~ 25 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGKMSIRKAAKK 25 (45)
T ss_dssp -HHHHHHHHHHHHTTSS-HHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 468899999999977 356665554
No 472
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=31.22 E-value=58 Score=31.92 Aligned_cols=37 Identities=16% Similarity=-0.068 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEEEe
Q 012744 93 LEGLIEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAVVV 135 (457)
Q Consensus 93 ~~~~~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~ 135 (457)
..++.+.+++ .+||++|.... ...+|+++|||++.+.
T Consensus 358 ~~e~~~~i~~---~~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 358 HYELEEFVKR---LKPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred HHHHHHHHHH---hCCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 3344444444 79999999864 6778999999998764
No 473
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=31.14 E-value=75 Score=22.31 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCc
Q 012744 19 PLLELSQNLAKHGLRITFVNSEY 41 (457)
Q Consensus 19 p~~~la~~L~~~Gh~Vt~~~~~~ 41 (457)
.-+.+|..|++.|.+||++....
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccc
Confidence 35789999999999999998644
No 474
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=31.08 E-value=63 Score=31.25 Aligned_cols=46 Identities=15% Similarity=0.152 Sum_probs=36.1
Q ss_pred CCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhh
Q 012744 3 SPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLES 49 (457)
Q Consensus 3 ~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~ 49 (457)
+++|++-..|+.. .+....+++.|.++|++|.++.+......+.+.
T Consensus 4 ~k~ill~v~gsia-ayk~~~l~r~L~~~ga~v~vvmt~~a~~fv~p~ 49 (392)
T COG0452 4 GKRILLGVTGSIA-AYKSVELVRLLRRSGAEVRVVMTESARKFITPL 49 (392)
T ss_pred CceEEEEecCchh-hhhHHHHHHHHhhCCCeeEEEcchhhhhhcCcc
Confidence 4467766665553 456699999999999999999998888777655
No 475
>PRK09072 short chain dehydrogenase; Provisional
Probab=31.06 E-value=1e+02 Score=27.64 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=22.1
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCC
Q 012744 6 VVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSE 40 (457)
Q Consensus 6 vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~ 40 (457)
.++++ |+.|.+- ..+++.|+++|++|+++.-.
T Consensus 7 ~vlIt-G~s~~iG--~~ia~~l~~~G~~V~~~~r~ 38 (263)
T PRK09072 7 RVLLT-GASGGIG--QALAEALAAAGARLLLVGRN 38 (263)
T ss_pred EEEEE-CCCchHH--HHHHHHHHHCCCEEEEEECC
Confidence 34444 4444443 67899999999999988753
No 476
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=31.04 E-value=85 Score=28.36 Aligned_cols=37 Identities=22% Similarity=0.201 Sum_probs=30.2
Q ss_pred CEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCC
Q 012744 4 PHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSE 40 (457)
Q Consensus 4 ~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~ 40 (457)
|+|.+..=|+-|=-.-...||..|+++|++|.++=-.
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D 37 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCD 37 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 4577776666788889999999999999999988543
No 477
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=30.99 E-value=85 Score=24.40 Aligned_cols=35 Identities=17% Similarity=0.344 Sum_probs=27.5
Q ss_pred CCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeC
Q 012744 3 SPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNS 39 (457)
Q Consensus 3 ~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~ 39 (457)
...++++++|+. +...+..++.|.+.|.+++++..
T Consensus 9 g~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~ 43 (124)
T PF02780_consen 9 GADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDL 43 (124)
T ss_dssp SSSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEee
Confidence 456788887777 45678899999999988888764
No 478
>PRK05993 short chain dehydrogenase; Provisional
Probab=30.98 E-value=76 Score=28.77 Aligned_cols=37 Identities=14% Similarity=0.147 Sum_probs=24.1
Q ss_pred CCCCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCC
Q 012744 1 MSSPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSE 40 (457)
Q Consensus 1 m~~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~ 40 (457)
|...+.++++.++ |-+- ..+|+.|+++|++|+.+.-.
T Consensus 1 m~~~k~vlItGas-ggiG--~~la~~l~~~G~~Vi~~~r~ 37 (277)
T PRK05993 1 MDMKRSILITGCS-SGIG--AYCARALQSDGWRVFATCRK 37 (277)
T ss_pred CCCCCEEEEeCCC-cHHH--HHHHHHHHHCCCEEEEEECC
Confidence 4444555555443 3222 56789999999999887643
No 479
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=30.98 E-value=3.7e+02 Score=27.21 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=21.7
Q ss_pred CCeeEEEecCCcchHHHHHHHcCCceEEE
Q 012744 106 EKTACLIADGAAGWAIEVAEKMKLRRAVV 134 (457)
Q Consensus 106 ~~~D~vv~D~~~~~~~~~A~~lgiP~v~~ 134 (457)
.+||++|.... ...+|+++|||++..
T Consensus 397 ~~~Dllig~s~---~~~~A~k~gIP~ld~ 422 (513)
T TIGR01861 397 LKPDIILTGKR---PGEVSKKMRVPYLNA 422 (513)
T ss_pred cCCCEEEecCc---cchhHhhcCCCEEEc
Confidence 78999999854 447899999999875
No 480
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=30.82 E-value=1.9e+02 Score=28.20 Aligned_cols=29 Identities=28% Similarity=0.340 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCcChHHHHHHHHHHHhC-CCeEEEE
Q 012744 4 PHVVVIPNPEQGHVIPLLELSQNLAKH-GLRITFV 37 (457)
Q Consensus 4 ~~vl~~~~~~~GH~~p~~~la~~L~~~-Gh~Vt~~ 37 (457)
|||+++-.|+..| +|+++|++. |+.+.++
T Consensus 1 ~kvliiG~G~~~~-----~l~~~l~~~~~~~~i~~ 30 (420)
T PRK00885 1 MKVLVIGSGGREH-----ALAWKLAQSPLVEKVYV 30 (420)
T ss_pred CEEEEECCCHHHH-----HHHHHHHhCCCCCEEEE
Confidence 5899998887776 599999886 4444444
No 481
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=30.70 E-value=56 Score=30.25 Aligned_cols=39 Identities=18% Similarity=0.166 Sum_probs=27.6
Q ss_pred CCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHH
Q 012744 3 SPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRV 46 (457)
Q Consensus 3 ~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~ 46 (457)
.+||+|+-.|.. ....-++|.++||+|.-+.+...+..-
T Consensus 1 ~mkivF~GTp~f-----a~~~L~~L~~~~~eivaV~Tqpdkp~g 39 (307)
T COG0223 1 MMRIVFFGTPEF-----AVPSLEALIEAGHEIVAVVTQPDKPAG 39 (307)
T ss_pred CcEEEEEcCchh-----hHHHHHHHHhCCCceEEEEeCCCCccC
Confidence 368888877643 455667788889999988876655443
No 482
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=30.50 E-value=66 Score=22.86 Aligned_cols=29 Identities=14% Similarity=0.218 Sum_probs=19.7
Q ss_pred CCeeEEEecCCcc--hHHHHHHHcCCceEEE
Q 012744 106 EKTACLIADGAAG--WAIEVAEKMKLRRAVV 134 (457)
Q Consensus 106 ~~~D~vv~D~~~~--~~~~~A~~lgiP~v~~ 134 (457)
.+.--||++.-.. .+..+|+.+|||++.=
T Consensus 29 ~~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg 59 (80)
T PF00391_consen 29 QRVAGIVTEEGGPTSHAAILARELGIPAIVG 59 (80)
T ss_dssp TTSSEEEESSSSTTSHHHHHHHHTT-EEEES
T ss_pred hheEEEEEEcCCccchHHHHHHHcCCCEEEe
Confidence 3455566665333 7788999999999983
No 483
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=30.42 E-value=99 Score=30.51 Aligned_cols=39 Identities=18% Similarity=0.251 Sum_probs=31.2
Q ss_pred CEEEEEcCCCC---cChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012744 4 PHVVVIPNPEQ---GHVIPLLELSQNLAKHGLRITFVNSEYN 42 (457)
Q Consensus 4 ~~vl~~~~~~~---GH~~p~~~la~~L~~~Gh~Vt~~~~~~~ 42 (457)
+|.+|++.|.. |-=.-...||+.|++||++||..--.++
T Consensus 1 ~KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPY 42 (533)
T COG0504 1 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPY 42 (533)
T ss_pred CeEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEEecccc
Confidence 46788887733 5556788999999999999999876554
No 484
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=30.42 E-value=1.1e+02 Score=28.73 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=28.3
Q ss_pred CEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012744 4 PHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYN 42 (457)
Q Consensus 4 ~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~ 42 (457)
++|.++-.|++| .+||+.|++.||+|++-.....
T Consensus 2 ~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~~~ 35 (329)
T COG0240 2 MKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRDEE 35 (329)
T ss_pred ceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecCHH
Confidence 578888888877 5799999999999999886543
No 485
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=30.24 E-value=64 Score=27.98 Aligned_cols=103 Identities=17% Similarity=0.194 Sum_probs=60.0
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHHHHH
Q 012744 6 VVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLLEKR 85 (457)
Q Consensus 6 vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (457)
|++.-.|+.|--.-...||++|.+++|.|..++..+.. ++. ..+.++- .-+.+
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~---------------~i~---~DEslpi---------~ke~y 56 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLR---------------GIL---WDESLPI---------LKEVY 56 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhh---------------hee---cccccch---------HHHHH
Confidence 45556889999999999999999999999876653321 121 1111111 01111
Q ss_pred HHhcchHHHHHHHHHhcCCCCCeeEEEecCCcc-h-----HHHHHHHcCCceEEEechhhH
Q 012744 86 LQVMPGKLEGLIEEIHGREGEKTACLIADGAAG-W-----AIEVAEKMKLRRAVVVITSAA 140 (457)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~~~~D~vv~D~~~~-~-----~~~~A~~lgiP~v~~~~~~~~ 140 (457)
.....+....++... .+--+||+|...+ - ....|..+..++.++....+.
T Consensus 57 res~~ks~~rlldSa-----lkn~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~pl 112 (261)
T COG4088 57 RESFLKSVERLLDSA-----LKNYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPL 112 (261)
T ss_pred HHHHHHHHHHHHHHH-----hcceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCH
Confidence 222222222233321 2335899998766 2 245788999998887665443
No 486
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=30.22 E-value=3.3e+02 Score=26.21 Aligned_cols=27 Identities=15% Similarity=0.096 Sum_probs=22.1
Q ss_pred CCeeEEEecCCcchHHHHHHHcCCceEEEe
Q 012744 106 EKTACLIADGAAGWAIEVAEKMKLRRAVVV 135 (457)
Q Consensus 106 ~~~D~vv~D~~~~~~~~~A~~lgiP~v~~~ 135 (457)
.+||+++.+. ....+++++|+|++.+.
T Consensus 347 ~~pdl~ig~~---~~~~~~~~~~ip~~~~~ 373 (399)
T cd00316 347 LKPDLIIGGS---KGRYIAKKLGIPLVRIG 373 (399)
T ss_pred cCCCEEEECC---cHHHHHHHhCCCEEEcC
Confidence 7899999995 45677888999998753
No 487
>CHL00194 ycf39 Ycf39; Provisional
Probab=30.19 E-value=84 Score=29.23 Aligned_cols=32 Identities=9% Similarity=0.208 Sum_probs=23.1
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCC
Q 012744 5 HVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSE 40 (457)
Q Consensus 5 ~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~ 40 (457)
+|++ .|+.|.+-. .|+++|.++||+|+.++-.
T Consensus 2 kIlV--tGatG~iG~--~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 2 SLLV--IGATGTLGR--QIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred EEEE--ECCCcHHHH--HHHHHHHHCCCeEEEEEcC
Confidence 4544 466666554 4788899999999998754
No 488
>KOG1509 consensus Predicted nucleic acid-binding protein ASMTL [Cell cycle control, cell division, chromosome partitioning]
Probab=30.18 E-value=1.4e+02 Score=25.46 Aligned_cols=77 Identities=18% Similarity=0.205 Sum_probs=43.2
Q ss_pred hCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcCCCCCe
Q 012744 29 KHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLLEKRLQVMPGKLEGLIEEIHGREGEKT 108 (457)
Q Consensus 29 ~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 108 (457)
..|+++++++.+.-.+.+.+. -|+++...+..+++.-...++................++++.|.+..+..|
T Consensus 7 ~~~~riiL~S~s~rrk~i~~~--------~G~~~~~~~S~feEnl~k~~~~~p~~yv~~tA~~KA~~I~erL~~~Ed~~~ 78 (209)
T KOG1509|consen 7 LKGKRIILASASPRRKQILAE--------MGLNLEVVVSTFEENLIKSSFETPEDYVVETAKQKAEEIIERLGDGEDSFP 78 (209)
T ss_pred hcCcEEEEecCCchHHHHHHH--------cCCceEEEeccchhhchhhccCCHHHHHHHHHHHHHHHHHHHhhccccCCc
Confidence 378999999987776666554 277777766555554221112222222233334567788888875321335
Q ss_pred eEEEe
Q 012744 109 ACLIA 113 (457)
Q Consensus 109 D~vv~ 113 (457)
|++++
T Consensus 79 ~~vi~ 83 (209)
T KOG1509|consen 79 DVVIS 83 (209)
T ss_pred ccccc
Confidence 55443
No 489
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=30.10 E-value=65 Score=29.94 Aligned_cols=35 Identities=11% Similarity=0.171 Sum_probs=28.0
Q ss_pred CCCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCc
Q 012744 2 SSPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEY 41 (457)
Q Consensus 2 ~~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~ 41 (457)
.++||.|+-.|..| .++|+.|.++||+|++.....
T Consensus 3 ~~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWG-----STLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCCC
Confidence 36788888777666 478999999999999887543
No 490
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=29.99 E-value=1.1e+02 Score=28.95 Aligned_cols=115 Identities=12% Similarity=0.094 Sum_probs=62.8
Q ss_pred CCEEEEEcCCCC--cChHHHHHHHHHHHhCCCeEEEEeCCcchhHHHhhhcCCCCCCCCeEEEecCCCCCCCCC---cch
Q 012744 3 SPHVVVIPNPEQ--GHVIPLLELSQNLAKHGLRITFVNSEYNHKRVLESLEGKNYIGEQIHLVSIPDGMEPWDD---RSD 77 (457)
Q Consensus 3 ~~~vl~~~~~~~--GH~~p~~~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 77 (457)
++||.+++.|+. |=-....++.+.+..+|.+|.-+-..+. ..+..... .+.-..+.+-...+.. +..
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~~g~eV~Gi~~Gy~-GL~~~~i~-------~l~~~~v~~~~~~GGT~lgssR 73 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIKEGLEVFGIYNGYL-GLLEGDIK-------PLTREDVDDLINRGGTFLGSAR 73 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHcCCEEEEEecchh-hhcCCcce-------eccccchhHHHhcCCeEEeeCC
Confidence 568999998866 7677889999999999999988765432 12111000 0111111100000000 000
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHhcCCCCCeeEEEe---cCCcchHHHHHHHcCCceEEE
Q 012744 78 MRKLLEKRLQVMPGKLEGLIEEIHGREGEKTACLIA---DGAAGWAIEVAEKMKLRRAVV 134 (457)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~D~vv~---D~~~~~~~~~A~~lgiP~v~~ 134 (457)
..+ + ...+..+..++.+++ .+.|.+|+ |.....+..++++.++|+|.+
T Consensus 74 ~~~----~--~~~e~~~~~~~~l~~---~gId~LvvIGGDgS~~gA~~Lae~~~i~vVGv 124 (347)
T COG0205 74 FPE----F--KTEEGRKVAAENLKK---LGIDALVVIGGDGSYTGAALLAEEGGIPVVGV 124 (347)
T ss_pred CCC----c--ccHHHHHHHHHHHHH---cCCCEEEEECCCChHHHHHHHHHhcCCcEEec
Confidence 000 0 001122245555555 67786654 555558899999999999984
No 491
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=29.98 E-value=1.2e+02 Score=25.90 Aligned_cols=47 Identities=15% Similarity=0.100 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCCCCeeEEEecCCcc--hHHHHHHHcCC-ceEEEechhh
Q 012744 92 KLEGLIEEIHGREGEKTACLIADGAAG--WAIEVAEKMKL-RRAVVVITSA 139 (457)
Q Consensus 92 ~~~~~~~~l~~~~~~~~D~vv~D~~~~--~~~~~A~~lgi-P~v~~~~~~~ 139 (457)
..+.+.+.+.+++ .+||+||+=.... .|..+++.||+ |..++-....
T Consensus 15 ~~~~lA~kI~~s~-~~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v~~y 64 (192)
T COG2236 15 LCRALAEKIRASG-FKPDVIVAIARGGLIPARILSDFLGVKPLYSIKVEHY 64 (192)
T ss_pred HHHHHHHHHHHcC-CCCCEEEEEcCCceehHHHHHHHhCCCceEEEEEEEe
Confidence 3445555555444 9999999877544 88999999998 6666655444
No 492
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=29.88 E-value=3e+02 Score=22.18 Aligned_cols=92 Identities=13% Similarity=0.161 Sum_probs=49.6
Q ss_pred HHHHHHHHHhCCCeEEEEeCCcchh---HHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHHHHHHHhcchHHHHH
Q 012744 20 LLELSQNLAKHGLRITFVNSEYNHK---RVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLLEKRLQVMPGKLEGL 96 (457)
Q Consensus 20 ~~~la~~L~~~Gh~Vt~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (457)
+..+.+.|.++|+.+.++|...... .+...+.. .-+..+-..+..... +.-...++.+
T Consensus 82 ~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~-----~~f~~i~~~~~~~~~--------------Kp~~~~~~~~ 142 (176)
T PF13419_consen 82 VRELLERLKAKGIPLVIVSNGSRERIERVLERLGLD-----DYFDEIISSDDVGSR--------------KPDPDAYRRA 142 (176)
T ss_dssp HHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHG-----GGCSEEEEGGGSSSS--------------TTSHHHHHHH
T ss_pred hhhhhhhcccccceeEEeecCCcccccccccccccc-----cccccccccchhhhh--------------hhHHHHHHHH
Confidence 5678889988999999999875432 22222110 011111111111110 1111223344
Q ss_pred HHHHhcCCCCCeeEEEecCCcchHHHHHHHcCCceEEE
Q 012744 97 IEEIHGREGEKTACLIADGAAGWAIEVAEKMKLRRAVV 134 (457)
Q Consensus 97 ~~~l~~~~~~~~D~vv~D~~~~~~~~~A~~lgiP~v~~ 134 (457)
++.+.- ..-+++++|... .-...|+..|++.|.+
T Consensus 143 ~~~~~~---~p~~~~~vgD~~-~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 143 LEKLGI---PPEEILFVGDSP-SDVEAAKEAGIKTIWV 176 (176)
T ss_dssp HHHHTS---SGGGEEEEESSH-HHHHHHHHTTSEEEEE
T ss_pred HHHcCC---CcceEEEEeCCH-HHHHHHHHcCCeEEeC
Confidence 444321 334577777555 8888999999998864
No 493
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=29.82 E-value=79 Score=29.94 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=31.0
Q ss_pred CCCCEEEEEcCCCCc-C---hHHHHHHHHHHHhCCCeEEEEeCCc
Q 012744 1 MSSPHVVVIPNPEQG-H---VIPLLELSQNLAKHGLRITFVNSEY 41 (457)
Q Consensus 1 m~~~~vl~~~~~~~G-H---~~p~~~la~~L~~~Gh~Vt~~~~~~ 41 (457)
|.|+||+++..|..+ | +.....++++|.+.||+|+.+....
T Consensus 1 m~~~~i~vl~GG~S~E~evSl~s~~~v~~~l~~~~~~v~~i~i~~ 45 (343)
T PRK14568 1 MNRIKVGILFGGCSEEHPVSVKSAIEVARNLDTEKYEPFYIGITK 45 (343)
T ss_pred CCCcEEEEEECCCCCchHHHHHhHHHHHHhhcccCCeEEEEEECC
Confidence 778999888777443 2 3456788999999999999886544
No 494
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=29.73 E-value=1.6e+02 Score=19.01 Aligned_cols=46 Identities=22% Similarity=0.296 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHhCCHH-----HHHHHHHHHHHHHhhhhcCCChHHHHHHHHHH
Q 012744 403 GREEIKNKVDQVLGDQN-----FKARALKLKEKALSSVREGGSSNKAIQNFVQS 451 (457)
Q Consensus 403 ~~~~l~~~i~~~l~~~~-----~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 451 (457)
|.++|.++|+++|.+.+ .+.=-+++.+++.-. -.+.+..++++|..
T Consensus 1 td~~i~~~i~~iL~~~dl~~vT~k~vr~~Le~~~~~d---L~~~K~~I~~~I~~ 51 (54)
T PF08766_consen 1 TDEEIREAIREILREADLDTVTKKQVREQLEERFGVD---LSSRKKFIKELIDE 51 (54)
T ss_dssp -HHHHHHHHHHHHTTS-GGG--HHHHHHHHHHH-SS-----SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHhHhhHHHHHHHHHHHHCCC---cHHHHHHHHHHHHH
Confidence 46788999999997653 333344444444321 23444455555544
No 495
>PRK09739 hypothetical protein; Provisional
Probab=29.68 E-value=1.4e+02 Score=25.57 Aligned_cols=38 Identities=11% Similarity=0.134 Sum_probs=24.3
Q ss_pred CCCCEEEEEcCCCC-cC-hH-HHHHHHHHHHhCCCeEEEEe
Q 012744 1 MSSPHVVVIPNPEQ-GH-VI-PLLELSQNLAKHGLRITFVN 38 (457)
Q Consensus 1 m~~~~vl~~~~~~~-GH-~~-p~~~la~~L~~~Gh~Vt~~~ 38 (457)
|..+||+++..... +- -. -...+++.|.++||+|+++-
T Consensus 1 ~~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~d 41 (199)
T PRK09739 1 MQSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELD 41 (199)
T ss_pred CCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 56677877654333 22 22 24556777888999999765
No 496
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=29.65 E-value=52 Score=31.68 Aligned_cols=40 Identities=18% Similarity=0.231 Sum_probs=28.0
Q ss_pred CCEEEEEcCCCCcChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012744 3 SPHVVVIPNPEQGHVIPLLELSQNLAKHGLRITFVNSEYN 42 (457)
Q Consensus 3 ~~~vl~~~~~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~~ 42 (457)
|--|++++.|..|+-+-.-.++.+|+++|+=|..+-+...
T Consensus 99 ~~PvvIFSHGlgg~R~~yS~~~~eLAS~GyVV~aieHrDg 138 (379)
T PF03403_consen 99 KFPVVIFSHGLGGSRTSYSAICGELASHGYVVAAIEHRDG 138 (379)
T ss_dssp -EEEEEEE--TT--TTTTHHHHHHHHHTT-EEEEE---SS
T ss_pred CCCEEEEeCCCCcchhhHHHHHHHHHhCCeEEEEeccCCC
Confidence 3468999999999999999999999999999999877653
No 497
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=29.65 E-value=1.1e+02 Score=26.97 Aligned_cols=28 Identities=11% Similarity=0.195 Sum_probs=20.5
Q ss_pred CCCcChHHHHHHHHHHHhCCCeEEEEeCCc
Q 012744 12 PEQGHVIPLLELSQNLAKHGLRITFVNSEY 41 (457)
Q Consensus 12 ~~~GH~~p~~~la~~L~~~Gh~Vt~~~~~~ 41 (457)
|+.|.+- ..+++.|.++||+|+.+.-..
T Consensus 12 Gasg~iG--~~l~~~l~~~G~~V~~~~r~~ 39 (251)
T PRK07231 12 GASSGIG--EGIARRFAAEGARVVVTDRNE 39 (251)
T ss_pred CCCChHH--HHHHHHHHHCCCEEEEEeCCH
Confidence 4445444 578999999999988887544
No 498
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=29.55 E-value=3.3e+02 Score=22.65 Aligned_cols=91 Identities=19% Similarity=0.238 Sum_probs=53.4
Q ss_pred HHHHHHHHHhCCCeEEEEeCCcc-hhHHHhhhcCCCCCCCCeEEEecCCCCCCCCCcchHHHHHHHHHHhcchHHHHHHH
Q 012744 20 LLELSQNLAKHGLRITFVNSEYN-HKRVLESLEGKNYIGEQIHLVSIPDGMEPWDDRSDMRKLLEKRLQVMPGKLEGLIE 98 (457)
Q Consensus 20 ~~~la~~L~~~Gh~Vt~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (457)
+..|.+...++|..|.+++.... .+.+.+.. ....+++++....++.... ....++++
T Consensus 35 ~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l---~~~yp~l~i~g~~~g~~~~------------------~~~~~i~~ 93 (171)
T cd06533 35 MPALLELAAQKGLRVFLLGAKPEVLEKAAERL---RARYPGLKIVGYHHGYFGP------------------EEEEEIIE 93 (171)
T ss_pred HHHHHHHHHHcCCeEEEECCCHHHHHHHHHHH---HHHCCCcEEEEecCCCCCh------------------hhHHHHHH
Confidence 45666777778999999986543 22211111 0112578877654443221 01112555
Q ss_pred HHhcCCCCCeeEEEecCCcc----hHHHHHHHcCCceEEE
Q 012744 99 EIHGREGEKTACLIADGAAG----WAIEVAEKMKLRRAVV 134 (457)
Q Consensus 99 ~l~~~~~~~~D~vv~D~~~~----~~~~~A~~lgiP~v~~ 134 (457)
.+.+ .+||+|++-.-.+ ++....+.++.+++.-
T Consensus 94 ~I~~---~~pdiv~vglG~PkQE~~~~~~~~~l~~~v~~~ 130 (171)
T cd06533 94 RINA---SGADILFVGLGAPKQELWIARHKDRLPVPVAIG 130 (171)
T ss_pred HHHH---cCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEE
Confidence 5555 8999999988777 6666677776665543
No 499
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=29.48 E-value=68 Score=28.86 Aligned_cols=39 Identities=13% Similarity=0.258 Sum_probs=26.7
Q ss_pred CEEEEEcCCCC---cChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012744 4 PHVVVIPNPEQ---GHVIPLLELSQNLAKHGLRITFVNSEYN 42 (457)
Q Consensus 4 ~~vl~~~~~~~---GH~~p~~~la~~L~~~Gh~Vt~~~~~~~ 42 (457)
+|.+|++.|.. |-=.-...|+..|+.||++|+..--.++
T Consensus 1 tKyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DPY 42 (276)
T PF06418_consen 1 TKYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDPY 42 (276)
T ss_dssp -EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-S
T ss_pred CcEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeeccc
Confidence 47788887744 4445688999999999999999875443
No 500
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=29.41 E-value=82 Score=27.60 Aligned_cols=33 Identities=18% Similarity=0.026 Sum_probs=24.2
Q ss_pred CCeeEEEecCCc--chHHHHHHHcCCceEEEechh
Q 012744 106 EKTACLIADGAA--GWAIEVAEKMKLRRAVVVITS 138 (457)
Q Consensus 106 ~~~D~vv~D~~~--~~~~~~A~~lgiP~v~~~~~~ 138 (457)
.+||+||..... .....-....++|++.+....
T Consensus 59 l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 59 LKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp T--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred CCCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 589999998777 355556677899999987765
Done!