BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012745
(457 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Query: 71 NQLDQLRVLSFKGNSISGQIP-NLLGLVNLKSLYLNDNNFSGKFPGSLSSLHRLKIIVLA 129
N + L+ L + N +G+IP L L SL+L+ N SG P SL SL +L+ + L
Sbjct: 388 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 447
Query: 130 NNQISGPIPESLSNLKRLYMLYLQDNKFTGPIPP--FNQTNLRFFNVSNNDLSGQIP 184
N + G IP+ L +K L L L N TG IP N TNL + ++SNN L+G+IP
Sbjct: 448 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 504
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 65/112 (58%), Gaps = 6/112 (5%)
Query: 75 QLRVLSFKGNSISGQIPNLLGLVNLKSLYLNDNNFSGKFP--GSLSSLHRLKIIVLANNQ 132
+L+ L+ GN ISG + ++ VNL+ L ++ NNFS P G S+L L I + N+
Sbjct: 176 ELKHLAISGNKISGDV-DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDI---SGNK 231
Query: 133 ISGPIPESLSNLKRLYMLYLQDNKFTGPIPPFNQTNLRFFNVSNNDLSGQIP 184
+SG ++S L +L + N+F GPIPP +L++ +++ N +G+IP
Sbjct: 232 LSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIP 283
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 80/143 (55%), Gaps = 7/143 (4%)
Query: 50 RVTKLVLEHLN---LTGTLDEKVINQLDQLRVLSFKGNSISGQIPNLLGLV-NLKSLYLN 105
++LV HL+ L+GT+ + L +LR L N + G+IP L V L++L L+
Sbjct: 413 NCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 471
Query: 106 DNNFSGKFPGSLSSLHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDNKFTGPIPP-- 163
N+ +G+ P LS+ L I L+NN+++G IP+ + L+ L +L L +N F+G IP
Sbjct: 472 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 531
Query: 164 FNQTNLRFFNVSNNDLSGQIPVT 186
+ +L + +++ N +G IP
Sbjct: 532 GDCRSLIWLDLNTNLFNGTIPAA 554
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 107 NNFSGKFPGSLSSLHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDNKFTGPIPPFNQ 166
N SG P + S+ L I+ L +N ISG IP+ + +L+ L +L L NK G IP
Sbjct: 639 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 698
Query: 167 --TNLRFFNVSNNDLSGQIPVTPALVRFNASSFLLNINLCG 205
T L ++SNN+LSG IP F + FL N LCG
Sbjct: 699 ALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 739
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 68/140 (48%), Gaps = 7/140 (5%)
Query: 54 LVLEHLNLTGTLDEKVINQLDQLRVLSFKGNSISGQIPNLLGLVNLKSLYLND-NNFSGK 112
L L TG + + + D L L GN G +P G +L NNFSG+
Sbjct: 271 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 113 FP-GSLSSLHRLKIIVLANNQISGPIPESLSNLK-RLYMLYLQDNKFTGPIPPFNQTN-- 168
P +L + LK++ L+ N+ SG +PESL+NL L L L N F+GPI P N
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 390
Query: 169 --LRFFNVSNNDLSGQIPVT 186
L+ + NN +G+IP T
Sbjct: 391 NTLQELYLQNNGFTGKIPPT 410
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 72/152 (47%), Gaps = 10/152 (6%)
Query: 36 DVCKWQGIKECLNGRVTKLVLEHLNLTGTLDEKVINQLDQLRVLSFKGNSISGQIPNLLG 95
+V W C G + L + ++G +D +++ L L N+ S IP L
Sbjct: 164 NVVGWVLSDGC--GELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPFLGD 218
Query: 96 LVNLKSLYLNDNNFSGKFPGSLSSLHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDN 155
L+ L ++ N SG F ++S+ LK++ +++NQ GPIP LK L L L +N
Sbjct: 219 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAEN 276
Query: 156 KFTGPIPPF---NQTNLRFFNVSNNDLSGQIP 184
KFTG IP F L ++S N G +P
Sbjct: 277 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 308
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 75 QLRVLSFKGNSISGQIPNLLG-LVNLKSLYLNDNNFSGKFPGSLSSLHRLKIIVLANNQI 133
+ L N +SG IP +G + L L L N+ SG P + L L I+ L++N++
Sbjct: 630 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 689
Query: 134 SGPIPESLSNLKRLYMLYLQDNKFTGPIPPFNQ 166
G IP+++S L L + L +N +GPIP Q
Sbjct: 690 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQ 722
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Query: 71 NQLDQLRVLSFKGNSISGQIP-NLLGLVNLKSLYLNDNNFSGKFPGSLSSLHRLKIIVLA 129
N + L+ L + N +G+IP L L SL+L+ N SG P SL SL +L+ + L
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450
Query: 130 NNQISGPIPESLSNLKRLYMLYLQDNKFTGPIPP--FNQTNLRFFNVSNNDLSGQIP 184
N + G IP+ L +K L L L N TG IP N TNL + ++SNN L+G+IP
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 65/112 (58%), Gaps = 6/112 (5%)
Query: 75 QLRVLSFKGNSISGQIPNLLGLVNLKSLYLNDNNFSGKFP--GSLSSLHRLKIIVLANNQ 132
+L+ L+ GN ISG + ++ VNL+ L ++ NNFS P G S+L L I + N+
Sbjct: 179 ELKHLAISGNKISGDV-DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDI---SGNK 234
Query: 133 ISGPIPESLSNLKRLYMLYLQDNKFTGPIPPFNQTNLRFFNVSNNDLSGQIP 184
+SG ++S L +L + N+F GPIPP +L++ +++ N +G+IP
Sbjct: 235 LSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIP 286
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 80/143 (55%), Gaps = 7/143 (4%)
Query: 50 RVTKLVLEHLN---LTGTLDEKVINQLDQLRVLSFKGNSISGQIPNLLGLV-NLKSLYLN 105
++LV HL+ L+GT+ + L +LR L N + G+IP L V L++L L+
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474
Query: 106 DNNFSGKFPGSLSSLHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDNKFTGPIPP-- 163
N+ +G+ P LS+ L I L+NN+++G IP+ + L+ L +L L +N F+G IP
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534
Query: 164 FNQTNLRFFNVSNNDLSGQIPVT 186
+ +L + +++ N +G IP
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAA 557
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 68/140 (48%), Gaps = 7/140 (5%)
Query: 54 LVLEHLNLTGTLDEKVINQLDQLRVLSFKGNSISGQIPNLLGLVNLKSLYLND-NNFSGK 112
L L TG + + + D L L GN G +P G +L NNFSG+
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 113 FP-GSLSSLHRLKIIVLANNQISGPIPESLSNLK-RLYMLYLQDNKFTGPIPPFNQTN-- 168
P +L + LK++ L+ N+ SG +PESL+NL L L L N F+GPI P N
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393
Query: 169 --LRFFNVSNNDLSGQIPVT 186
L+ + NN +G+IP T
Sbjct: 394 NTLQELYLQNNGFTGKIPPT 413
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 107 NNFSGKFPGSLSSLHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDNKFTGPIPPFNQ 166
N SG P + S+ L I+ L +N ISG IP+ + +L+ L +L L NK G IP
Sbjct: 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701
Query: 167 --TNLRFFNVSNNDLSGQIPVTPALVRFNASSFLLNINLCG 205
T L ++SNN+LSG IP F + FL N LCG
Sbjct: 702 ALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 72/152 (47%), Gaps = 10/152 (6%)
Query: 36 DVCKWQGIKECLNGRVTKLVLEHLNLTGTLDEKVINQLDQLRVLSFKGNSISGQIPNLLG 95
+V W C G + L + ++G +D +++ L L N+ S IP L
Sbjct: 167 NVVGWVLSDGC--GELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPFLGD 221
Query: 96 LVNLKSLYLNDNNFSGKFPGSLSSLHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDN 155
L+ L ++ N SG F ++S+ LK++ +++NQ GPIP LK L L L +N
Sbjct: 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAEN 279
Query: 156 KFTGPIPPF---NQTNLRFFNVSNNDLSGQIP 184
KFTG IP F L ++S N G +P
Sbjct: 280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 75 QLRVLSFKGNSISGQIPNLLG-LVNLKSLYLNDNNFSGKFPGSLSSLHRLKIIVLANNQI 133
+ L N +SG IP +G + L L L N+ SG P + L L I+ L++N++
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692
Query: 134 SGPIPESLSNLKRLYMLYLQDNKFTGPIPPFNQ 166
G IP+++S L L + L +N +GPIP Q
Sbjct: 693 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQ 725
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 56/109 (51%), Gaps = 12/109 (11%)
Query: 330 YSLEDLLKAS-----AETLGRGTIGSTYKAVLESGFIVTVKRLKDARYPRLE-EFRRHMD 383
+SL +L AS LGRG G YK L G +V VKRLK+ R E +F+ ++
Sbjct: 20 FSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQGGELQFQTEVE 79
Query: 384 ILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGTCCLATRP 432
++ H NL+ LR + ERLLVY Y NGS+ S CL RP
Sbjct: 80 MISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVAS------CLRERP 122
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 56/109 (51%), Gaps = 12/109 (11%)
Query: 330 YSLEDLLKAS-----AETLGRGTIGSTYKAVLESGFIVTVKRLKDARYPRLE-EFRRHMD 383
+SL +L AS LGRG G YK L G +V VKRLK+ R E +F+ ++
Sbjct: 28 FSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGELQFQTEVE 87
Query: 384 ILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGTCCLATRP 432
++ H NL+ LR + ERLLVY Y NGS+ S CL RP
Sbjct: 88 MISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVAS------CLRERP 130
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 85/190 (44%), Gaps = 12/190 (6%)
Query: 10 DTEALLSLKSSLDPFNRLSSWKNGDRDVCK--WQGI---KECLNGRVTKLVLEHLNLTGT 64
D +ALL +K L LSSW D C W G+ + RV L L LNL
Sbjct: 7 DKQALLQIKKDLGNPTTLSSWL-PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKP 65
Query: 65 LD-EKVINQLDQLRVLSFKG-NSISGQIPNLLG-LVNLKSLYLNDNNFSGKFPGSLSSLH 121
+ L L L G N++ G IP + L L LY+ N SG P LS +
Sbjct: 66 YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125
Query: 122 RLKIIVLANNQISGPIPESLSNLKRLYMLYLQDNKFTGPIPPFNQTNLRFF---NVSNND 178
L + + N +SG +P S+S+L L + N+ +G IP + + F +S N
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185
Query: 179 LSGQIPVTPA 188
L+G+IP T A
Sbjct: 186 LTGKIPPTFA 195
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 89/206 (43%), Gaps = 53/206 (25%)
Query: 54 LVLEHLNLTGTLDEKVINQLDQLRVLSFKGNSISGQIP-NLLGLVNLKSLYLNDNNFSGK 112
L + H N++G + + ++Q+ L L F N++SG +P ++ L NL + + N SG
Sbjct: 106 LYITHTNVSGAIPD-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164
Query: 113 FPGSLSSLHRL-KIIVLANNQISGPIPESLSNL--------------------------- 144
P S S +L + ++ N+++G IP + +NL
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ 224
Query: 145 -------------------KRLYMLYLQDNKFTGPIPPFNQTNLRFF---NVSNNDLSGQ 182
K L L L++N+ G +P T L+F NVS N+L G+
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ-GLTQLKFLHSLNVSFNNLCGE 283
Query: 183 IPVTPALVRFNASSFLLNINLCGEQI 208
IP L RF+ S++ N LCG +
Sbjct: 284 IPQGGNLQRFDVSAYANNKCLCGSPL 309
>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
pdb|3P86|B Chain B, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
Length = 309
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 341 ETLGRGTIGSTYKAVLESGFIVTVKRL--KDARYPRLEEFRRHMDILGRLRHPNLVPLRA 398
E +G G+ G+ ++A G V VK L +D R+ EF R + I+ RLRHPN+V
Sbjct: 43 EKIGAGSFGTVHRAEWH-GSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMG 101
Query: 399 YFQAKEERLLVYDYFPNGSLFSLIH 423
+V +Y GSL+ L+H
Sbjct: 102 AVTQPPNLSIVTEYLSRGSLYRLLH 126
>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
pdb|3PPZ|B Chain B, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
Length = 309
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 341 ETLGRGTIGSTYKAVLESGFIVTVKRL--KDARYPRLEEFRRHMDILGRLRHPNLVPLRA 398
E +G G+ G+ ++A G V VK L +D R+ EF R + I+ RLRHPN+V
Sbjct: 43 EKIGAGSFGTVHRAEWH-GSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMG 101
Query: 399 YFQAKEERLLVYDYFPNGSLFSLIHGT 425
+V +Y GSL+ L+H +
Sbjct: 102 AVTQPPNLSIVTEYLSRGSLYRLLHKS 128
>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680
Length = 292
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 343 LGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRL---EEFRRHMDILGRLRHPNLVPLRA 398
LG+G G+ Y A +S FIV +K L ++ + + RR ++I L HPN++ L
Sbjct: 31 LGKGKFGNVYLAREKKSHFIVALKVLFKSQIEKEGVEHQLRREIEIQAHLHHPNILRLYN 90
Query: 399 YFQAKEERLLVYDYFPNGSLFSLIHGTCCL 428
YF + L+ +Y P G L+ + +C
Sbjct: 91 YFYDRRRIYLILEYAPRGELYKELQKSCTF 120
>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form)
Length = 285
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 326 QQMSYSLEDLLKASAETLGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRL---EEFRRH 381
++ ++LED LG+G G+ Y A +S FI+ +K L A+ + + RR
Sbjct: 6 KKRQWALEDF--EIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRRE 63
Query: 382 MDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLF 419
++I LRHPN++ L YF L+ +Y P G ++
Sbjct: 64 VEIQSHLRHPNILRLYGYFHDATRVYLILEYAPRGEVY 101
>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure
pdb|2WTV|B Chain B, Aurora-A Inhibitor Structure
pdb|2WTV|C Chain C, Aurora-A Inhibitor Structure
pdb|2WTV|D Chain D, Aurora-A Inhibitor Structure
Length = 285
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 326 QQMSYSLEDLLKASAETLGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRL---EEFRRH 381
++ ++LED LG+G G+ Y A +S FI+ +K L A+ + + RR
Sbjct: 6 KKRQWALEDF--EIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRRE 63
Query: 382 MDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLF 419
++I LRHPN++ L YF L+ +Y P G ++
Sbjct: 64 VEIQSHLRHPNILRLYGYFHDATRVYLILEYAPRGEVY 101
>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly,
Lys240->arg, Met302- >leu) In Complex With
1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]-
Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea
pdb|3DJ5|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 290.
pdb|3DJ6|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 823.
pdb|3DJ7|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 130.
pdb|3D15|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
1-(3-Chloro-Phenyl)-3-
{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)-
Ethyl]-Thiazol-2- Yl}-Urea [sns-314]
pdb|3D2I|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With 1-{5-[2-(1-Methyl-1h-
Pyrazolo[4,
3-D]pyrimidin-7-Ylamino)-Ethyl]-Thiazol-2-Yl}-3-
(3-Trifluoromethyl-Phenyl)-Urea
pdb|3D2K|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
[7-(2-{2-[3-(3-Chloro-
Phenyl)-Ureido]-Thiazol-5-Yl}-Ethylamino)-Pyrazolo[4,3-
D]pyrimidin-1-Yl]-Acetic Acid
Length = 272
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 322 GPGDQQMSYSLEDLLKASAETLGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRL---EE 377
GP + ++LED LG+G G+ Y A +S FI+ +K L + + +
Sbjct: 1 GPLGSKRQWTLEDF--DIGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQ 58
Query: 378 FRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLF 419
RR ++I LRHPN++ L YF L+ +Y P G+++
Sbjct: 59 LRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVY 100
>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|B Chain B, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|C Chain C, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|D Chain D, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|E Chain E, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|F Chain F, Aurora-2 T287d T288d Complexed With Pha-680632
Length = 306
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 326 QQMSYSLEDLLKASAETLGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRL---EEFRRH 381
++ ++LED LG+G G+ Y A +S FI+ +K L A+ + + RR
Sbjct: 27 KKRQWALEDF--EIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRRE 84
Query: 382 MDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLF 419
++I LRHPN++ L YF L+ +Y P G+++
Sbjct: 85 VEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVY 122
>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor
Discovered Through Site-Directed Dynamic Tethering
Length = 272
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 322 GPGDQQMSYSLEDLLKASAETLGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRL---EE 377
GP + ++LED LG+G G+ Y A +S FI+ +K L + + +
Sbjct: 1 GPLGSKRQWTLEDF--DIGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQ 58
Query: 378 FRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLF 419
RR ++I LRHPN++ L YF L+ +Y P G+++
Sbjct: 59 LRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVY 100
>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626
pdb|2J4Z|B Chain B, Structure Of Aurora-2 In Complex With Pha-680626
Length = 306
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 326 QQMSYSLEDLLKASAETLGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRL---EEFRRH 381
++ ++LED LG+G G+ Y A +S FI+ +K L A+ + + RR
Sbjct: 27 KKRQWALEDF--EIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRRE 84
Query: 382 MDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLF 419
++I LRHPN++ L YF L+ +Y P G+++
Sbjct: 85 VEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVY 122
>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a
Length = 282
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 326 QQMSYSLEDLLKASAETLGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRL---EEFRRH 381
++ ++LED LG+G G+ Y A +S FI+ +K L A+ + + RR
Sbjct: 3 KKRQWALEDF--EIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRRE 60
Query: 382 MDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLF 419
++I LRHPN++ L YF L+ +Y P G+++
Sbjct: 61 VEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVY 98
>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor
pdb|2X6E|A Chain A, Aurora-A Bound To An Inhibitor
Length = 285
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 326 QQMSYSLEDLLKASAETLGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRL---EEFRRH 381
++ ++LED LG+G G+ Y A +S FI+ +K L A+ + + RR
Sbjct: 6 KKRQWALEDF--EIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRRE 63
Query: 382 MDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLF 419
++I LRHPN++ L YF L+ +Y P G+++
Sbjct: 64 VEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVY 101
>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine-
Threonine Kinase
Length = 297
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 326 QQMSYSLEDLLKASAETLGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRL---EEFRRH 381
++ ++LED LG+G G+ Y A +S FI+ +K L A+ + + RR
Sbjct: 18 KKRQWALEDF--EIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRRE 75
Query: 382 MDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLF 419
++I LRHPN++ L YF L+ +Y P G+++
Sbjct: 76 VEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVY 113
>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
pdb|2C6E|B Chain B, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
Length = 283
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 326 QQMSYSLEDLLKASAETLGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRL---EEFRRH 381
++ ++LED LG+G G+ Y A +S FI+ +K L A+ + + RR
Sbjct: 6 KKRQWALEDF--EIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRRE 63
Query: 382 MDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLF 419
++I LRHPN++ L YF L+ +Y P G+++
Sbjct: 64 VEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVY 101
>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287,
Thr288 And Bound To Tpx2 1-43
pdb|1OL7|A Chain A, Structure Of Human Aurora-A 122-403 Phosphorylated On
Thr287, Thr288
Length = 282
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 326 QQMSYSLEDLLKASAETLGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRL---EEFRRH 381
++ ++LED LG+G G+ Y A +S FI+ +K L A+ + + RR
Sbjct: 3 KKRQWALEDF--EIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRRE 60
Query: 382 MDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLF 419
++I LRHPN++ L YF L+ +Y P G+++
Sbjct: 61 VEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVY 98
>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679
pdb|3UNZ|B Chain B, Aurora A In Complex With Rpm1679
pdb|3UO4|A Chain A, Aurora A In Complex With Rpm1680
pdb|3UO5|A Chain A, Aurora A In Complex With Yl1-038-31
pdb|3UO6|A Chain A, Aurora A In Complex With Yl5-083
pdb|3UO6|B Chain B, Aurora A In Complex With Yl5-083
pdb|3UOD|A Chain A, Aurora A In Complex With Rpm1693
pdb|3UOH|A Chain A, Aurora A In Complex With Rpm1722
pdb|3UOH|B Chain B, Aurora A In Complex With Rpm1722
pdb|3UOJ|A Chain A, Aurora A In Complex With Rpm1715
pdb|3UOJ|B Chain B, Aurora A In Complex With Rpm1715
pdb|3UOK|A Chain A, Aurora A In Complex With Yl5-81-1
pdb|3UOK|B Chain B, Aurora A In Complex With Yl5-81-1
pdb|3UOL|A Chain A, Aurora A In Complex With So2-162
pdb|3UOL|B Chain B, Aurora A In Complex With So2-162
pdb|3UP2|A Chain A, Aurora A In Complex With Rpm1686
pdb|3UP7|A Chain A, Aurora A In Complex With Yl1-038-09
pdb|4DEA|A Chain A, Aurora A In Complex With Yl1-038-18
pdb|4DEB|A Chain A, Aurora A In Complex With Rk2-17-01
pdb|4DED|A Chain A, Aurora A In Complex With Yl1-038-21
pdb|4DEE|A Chain A, Aurora A In Complex With Adp
Length = 279
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 326 QQMSYSLEDLLKASAETLGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRL---EEFRRH 381
++ ++LED LG+G G+ Y A +S FI+ +K L A+ + + RR
Sbjct: 2 KKRQWALEDF--EIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRRE 59
Query: 382 MDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLF 419
++I LRHPN++ L YF L+ +Y P G+++
Sbjct: 60 VEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVY 97
>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine
Inhibitor
Length = 283
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 326 QQMSYSLEDLLKASAETLGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRL---EEFRRH 381
++ ++LED LG+G G+ Y A +S FI+ +K L A+ + + RR
Sbjct: 4 KKRQWALEDF--EIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRRE 61
Query: 382 MDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLF 419
++I LRHPN++ L YF L+ +Y P G+++
Sbjct: 62 VEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVY 99
>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A
Inhibitors: Structure Basis For Potency And Specificity
pdb|3K5U|A Chain A, Identification, Sar Studies And X-Ray Cocrystal Analysis
Of A Novel Furano-Pyrimidine Aurora Kinase A Inhibitor
pdb|3M11|A Chain A, Crystal Structure Of Aurora A Kinase Complexed With
Inhibitor
Length = 279
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 326 QQMSYSLEDLLKASAETLGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRL---EEFRRH 381
++ ++LED LG+G G+ Y A +S FI+ +K L A+ + + RR
Sbjct: 2 KKRQWALEDF--EIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRRE 59
Query: 382 MDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLF 419
++I LRHPN++ L YF L+ +Y P G+++
Sbjct: 60 VEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVY 97
>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp
Length = 285
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 326 QQMSYSLEDLLKASAETLGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRL---EEFRRH 381
++ ++LED LG+G G+ Y A +S FI+ +K L A+ + + RR
Sbjct: 6 KKRQWALEDF--EIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRRE 63
Query: 382 MDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLF 419
++I LRHPN++ L YF L+ +Y P G+++
Sbjct: 64 VEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVY 101
>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A
Diaminopyrimidine
Length = 281
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 326 QQMSYSLEDLLKASAETLGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRL---EEFRRH 381
++ ++LED LG+G G+ Y A +S FI+ +K L A+ + + RR
Sbjct: 2 KKRQWALEDF--EIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRRE 59
Query: 382 MDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLF 419
++I LRHPN++ L YF L+ +Y P G+++
Sbjct: 60 VEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVY 97
>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With
Adpnp
Length = 275
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 326 QQMSYSLEDLLKASAETLGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRL---EEFRRH 381
++ ++LED LG+G G+ Y A +S FI+ +K L A+ + + RR
Sbjct: 1 KKRQWALEDF--EIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRRE 58
Query: 382 MDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLF 419
++I LRHPN++ L YF L+ +Y P G+++
Sbjct: 59 VEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVY 96
>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors
Length = 283
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 330 YSLEDLLKASAETLGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRL---EEFRRHMDIL 385
++LED LG+G G+ Y A +S FI+ +K L A+ + + RR ++I
Sbjct: 8 WALEDF--EIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQ 65
Query: 386 GRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLF 419
LRHPN++ L YF L+ +Y P G+++
Sbjct: 66 SHLRHPNILRLYGYFHDATRVYLILEYAPLGTVY 99
>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358
pdb|2J50|B Chain B, Structure Of Aurora-2 In Complex With Pha-739358
Length = 280
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 330 YSLEDLLKASAETLGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRL---EEFRRHMDIL 385
++LED LG+G G+ Y A +S FI+ +K L A+ + + RR ++I
Sbjct: 5 WALEDF--EIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQ 62
Query: 386 GRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLF 419
LRHPN++ L YF L+ +Y P G+++
Sbjct: 63 SHLRHPNILRLYGYFHDATRVYLILEYAPLGTVY 96
>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine
Inhibitor
Length = 272
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 326 QQMSYSLEDLLKASAETLGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRL---EEFRRH 381
++ ++LED LG+G G+ Y A +S FI+ +K L A+ + + RR
Sbjct: 4 KKRQWALEDF--EIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRRE 61
Query: 382 MDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLF 419
++I LRHPN++ L YF L+ +Y P G+++
Sbjct: 62 VEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVY 99
>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300
Length = 280
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 330 YSLEDLLKASAETLGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRL---EEFRRHMDIL 385
++LED LG+G G+ Y A +S FI+ +K L A+ + + RR ++I
Sbjct: 5 WALEDF--EIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQ 62
Query: 386 GRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLF 419
LRHPN++ L YF L+ +Y P G+++
Sbjct: 63 SHLRHPNILRLYGYFHDATRVYLILEYAPLGTVY 96
>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase
pdb|2NP8|A Chain A, Structural Basis For The Inhibition Of Aurora A Kinase By
A Novel Class Of High Affinity Disubstituted Pyrimidine
Inhibitors
pdb|2X81|A Chain A, Structure Of Aurora A In Complex With Mln8054
pdb|3MYG|A Chain A, Aurora A Kinase Complexed With Sch 1473759
pdb|3VAP|A Chain A, Synthesis And Sar Studies Of Imidazo-[1,2-A]-Pyrazine
Aurora Kinase Inhibitors With Improved Off Target Kinase
Selectivity
Length = 272
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 322 GPGDQQMSYSLEDLLKASAETLGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRL---EE 377
G + ++LED LG+G G+ Y A +S FI+ +K L A+ + +
Sbjct: 1 GAMGSKRQWALEDF--EIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ 58
Query: 378 FRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLF 419
RR ++I LRHPN++ L YF L+ +Y P G+++
Sbjct: 59 LRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVY 100
>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A
Gsk3beta Inhibitor
Length = 287
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 330 YSLEDLLKASAETLGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRL---EEFRRHMDIL 385
++LED LG+G G+ Y A +S FI+ +K L A+ + + RR ++I
Sbjct: 5 WALEDF--EIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQ 62
Query: 386 GRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLF 419
LRHPN++ L YF L+ +Y P G+++
Sbjct: 63 SHLRHPNILRLYGYFHDATRVYLILEYAPLGTVY 96
>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1E|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1F|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 326 QQMSYSLEDLLKASAETLGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRL---EEFRRH 381
++ ++LED LG+G G+ Y A +S FI+ +K L A+ + + RR
Sbjct: 4 KKRQWALEDF--EIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRRE 61
Query: 382 MDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLF 419
++I LRHPN++ L YF L+ +Y P G+++
Sbjct: 62 VEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVY 99
>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1G|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 326 QQMSYSLEDLLKASAETLGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRL---EEFRRH 381
++ ++LED LG+G G+ Y A +S FI+ +K L A+ + + RR
Sbjct: 4 KKRQWALEDF--EIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRRE 61
Query: 382 MDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLF 419
++I LRHPN++ L YF L+ +Y P G+++
Sbjct: 62 VEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVY 99
>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O50|B Chain B, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O51|A Chain A, Crystal Structure Of Anthranilamide 10 Bound To Auroraa
pdb|3EFW|A Chain A, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
pdb|3EFW|B Chain B, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
Length = 267
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 330 YSLEDLLKASAETLGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRL---EEFRRHMDIL 385
++LED LG+G G+ Y A +S FI+ +K L A+ + + RR ++I
Sbjct: 4 WALEDF--EIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQ 61
Query: 386 GRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLF 419
LRHPN++ L YF L+ +Y P G+++
Sbjct: 62 SHLRHPNILRLYGYFHDATRVYLILEYAPLGTVY 95
>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And
Compound 10
Length = 268
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 330 YSLEDLLKASAETLGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRL---EEFRRHMDIL 385
++LED LG+G G+ Y A +S FI+ +K L A+ + + RR ++I
Sbjct: 5 WALEDF--EIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQ 62
Query: 386 GRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLF 419
LRHPN++ L YF L+ +Y P G+++
Sbjct: 63 SHLRHPNILRLYGYFHDATRVYLILEYAPLGTVY 96
>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|3R22|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|4DHF|A Chain A, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
pdb|4DHF|B Chain B, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
Length = 271
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 330 YSLEDLLKASAETLGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRL---EEFRRHMDIL 385
++LED LG+G G+ Y A +S FI+ +K L A+ + + RR ++I
Sbjct: 8 WALEDF--EIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQ 65
Query: 386 GRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLF 419
LRHPN++ L YF L+ +Y P G+++
Sbjct: 66 SHLRHPNILRLYGYFHDATRVYLILEYAPLGTVY 99
>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And
Tpx2
Length = 268
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 330 YSLEDLLKASAETLGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRL---EEFRRHMDIL 385
++LED LG+G G+ Y A +S FI+ +K L A+ + + RR ++I
Sbjct: 5 WALEDF--EIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQ 62
Query: 386 GRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLF 419
LRHPN++ L YF L+ +Y P G+++
Sbjct: 63 SHLRHPNILRLYGYFHDATRVYLILEYAPLGTVY 96
>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|B Chain B, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|C Chain C, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H10|A Chain A, Aurora A Inhibitor Complex
pdb|3H10|B Chain B, Aurora A Inhibitor Complex
pdb|3H10|D Chain D, Aurora A Inhibitor Complex
pdb|3P9J|A Chain A, Aurora A Kinase Domain With Phthalazinone Pyrazole
Inhibitor
Length = 268
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 330 YSLEDLLKASAETLGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRL---EEFRRHMDIL 385
++LED LG+G G+ Y A +S FI+ +K L A+ + + RR ++I
Sbjct: 5 WALEDF--EIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQ 62
Query: 386 GRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLF 419
LRHPN++ L YF L+ +Y P G+++
Sbjct: 63 SHLRHPNILRLYGYFHDATRVYLILEYAPLGTVY 96
>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
pdb|3COH|B Chain B, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
Length = 268
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 330 YSLEDLLKASAETLGRGTIGSTYKAVLE-SGFIVTVKRLKDARYPRL---EEFRRHMDIL 385
++LED LG+G G+ Y A + S FI+ +K L A+ + + RR ++I
Sbjct: 5 WALEDF--EIGRPLGKGKFGNVYLAREKNSKFILALKVLFKAQLEKAGVEHQLRREVEIQ 62
Query: 386 GRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLF 419
LRHPN++ L YF L+ +Y P G+++
Sbjct: 63 SHLRHPNILRLYGYFHDSTRVYLILEYAPLGTVY 96
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%)
Query: 343 LGRGTIGSTYKAVLESGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPLRAYFQA 402
+G G G YK VL G V +KR +EEF ++ L RHP+LV L +
Sbjct: 47 IGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDE 106
Query: 403 KEERLLVYDYFPNGSLFSLIHGT 425
+ E +L+Y Y NG+L ++G+
Sbjct: 107 RNEMILIYKYMENGNLKRHLYGS 129
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%)
Query: 343 LGRGTIGSTYKAVLESGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPLRAYFQA 402
+G G G YK VL G V +KR +EEF ++ L RHP+LV L +
Sbjct: 47 IGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDE 106
Query: 403 KEERLLVYDYFPNGSLFSLIHGT 425
+ E +L+Y Y NG+L ++G+
Sbjct: 107 RNEMILIYKYMENGNLKRHLYGS 129
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 343 LGRGTIGSTYKAVLESGFIVTVKRLKDARYPRLEEFRRHMD----ILGRLRHPNLVPLRA 398
+G G G YK + + V VK+L EE ++ D ++ + +H NLV L
Sbjct: 39 MGEGGFGVVYKGYVNNT-TVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLG 97
Query: 399 YFQAKEERLLVYDYFPNGSLFSLIHGTCCLATRP 432
+ ++ LVY Y PNGSL + +C T P
Sbjct: 98 FSSDGDDLCLVYVYMPNGSLLDRL--SCLDGTPP 129
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 343 LGRGTIGSTYKAVLESGFIVTVKRLKDARYPRLEEFRRHMD----ILGRLRHPNLVPLRA 398
+G G G YK + + V VK+L EE ++ D ++ + +H NLV L
Sbjct: 33 MGEGGFGVVYKGYVNNT-TVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLG 91
Query: 399 YFQAKEERLLVYDYFPNGSLFSLIHGTCCLATRP 432
+ ++ LVY Y PNGSL + +C T P
Sbjct: 92 FSSDGDDLCLVYVYMPNGSLLDRL--SCLDGTPP 123
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 343 LGRGTIGSTYKAVLESGFIVTVKRLKDARYPRLEEFRRHMD----ILGRLRHPNLVPLRA 398
+G G G YK + + V VK+L EE ++ D ++ + +H NLV L
Sbjct: 39 MGEGGFGVVYKGYVNNT-TVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLG 97
Query: 399 YFQAKEERLLVYDYFPNGSLFSLIHGTCCLATRP 432
+ ++ LVY Y PNGSL + +C T P
Sbjct: 98 FSSDGDDLCLVYVYMPNGSLLDRL--SCLDGTPP 129
>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant
Length = 262
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 329 SYSLEDLLKASAETLGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRL---EEFRRHMDI 384
++LED LG+G G+ Y A + FI+ +K L A+ + + RR ++I
Sbjct: 1 QWALEDF--EIGRPLGKGKFGNVYLAREKQRKFILALKVLFKAQLEKAGVEHQLRREVEI 58
Query: 385 LGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLF 419
LRHPN++ L YF L+ +Y P G+++
Sbjct: 59 QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVY 93
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 90/196 (45%), Gaps = 27/196 (13%)
Query: 7 RSGDTEALLSLKSSLDPFNRLSSWKNGDRDVCKWQGIK--------ECLNGRVTKLV--- 55
+S T+A+ ++ LD LS++ G V +GI+ E + ++T L
Sbjct: 34 KSNVTDAVT--QADLDGIATLSAFNTG---VTTIEGIQYLNNLIGLELKDNQITDLTPLK 88
Query: 56 ----LEHLNLTGTLDEKV--INQLDQLRVLSFKGNSISGQIPNLLGLVNLKSLYLNDNNF 109
+ L L+G + V I L ++ L I+ P L GL NL+ LYL+ N
Sbjct: 89 NLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQI 147
Query: 110 SGKFPGSLSSLHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDNKFTGPIPPFNQTNL 169
+ P L+ L L+ + + NNQ++ P L+NL +L L DNK + P + NL
Sbjct: 148 TNISP--LAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKISDISPLASLPNL 203
Query: 170 RFFNVSNNDLSGQIPV 185
++ +N +S P+
Sbjct: 204 IEVHLKDNQISDVSPL 219
>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4APC|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4B9D|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor.
pdb|4B9D|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor
Length = 350
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 341 ETLGRGTIGSTYKAVL----ESGFIVTVKRLKDARYP--RLEEFRRHMDILGRLRHPNLV 394
+ +G G+ G KA+L E G +K + +R EE RR + +L ++HPN+V
Sbjct: 30 QKIGEGSFG---KAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIV 86
Query: 395 PLRAYFQAKEERLLVYDYFPNGSLFSLIHG 424
R F+ +V DY G LF I+
Sbjct: 87 QYRESFEENGSLYIVMDYCEGGDLFKRINA 116
>pdb|1KOB|A Chain A, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein
Kinase Domain
pdb|1KOB|B Chain B, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein
Kinase Domain
Length = 387
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 330 YSLEDLLKASAETLGRGTIGSTYKAVLESGFIVTVKRLKDARYPRLEEF--RRHMDILGR 387
Y D+L E LG G G ++ V ++ V V + + YP L+++ + + I+ +
Sbjct: 50 YDYYDIL----EELGSGAFGVVHRCVEKATGRVFVAKFINTPYP-LDKYTVKNEISIMNQ 104
Query: 388 LRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
L HP L+ L F+ K E +L+ ++ G LF I
Sbjct: 105 LHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRI 139
>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3IOK|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3KCK|A Chain A, A Novel Chemotype Of Kinase Inhibitors
Length = 313
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 341 ETLGRGTIGSTYKAVLE-----SGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVP 395
+ LG+G GS + +G +V VK+L+ + L +F R ++IL L+H N+V
Sbjct: 34 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVK 93
Query: 396 LRA--YFQAKEERLLVYDYFPNGSL 418
+ Y + L+ +Y P GSL
Sbjct: 94 YKGVCYSAGRRNLKLIMEYLPYGSL 118
>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3LPB|B Chain B, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3KRR|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
Quinoxaline Atp Site Inhibitor
Length = 295
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 341 ETLGRGTIGSTYKAVLE-----SGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVP 395
+ LG+G GS + +G +V VK+L+ + L +F R ++IL L+H N+V
Sbjct: 16 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVK 75
Query: 396 LRA--YFQAKEERLLVYDYFPNGSL 418
+ Y + L+ +Y P GSL
Sbjct: 76 YKGVCYSAGRRNLKLIMEYLPYGSL 100
>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors
Length = 311
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 341 ETLGRGTIGSTYKAVLE-----SGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVP 395
+ LG+G GS + +G +V VK+L+ + L +F R ++IL L+H N+V
Sbjct: 34 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVK 93
Query: 396 LRA--YFQAKEERLLVYDYFPNGSL 418
+ Y + L+ +Y P GSL
Sbjct: 94 YKGVCYSAGRRNLKLIMEYLPYGSL 118
>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|D Chain D, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|E Chain E, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4F08|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F08|B Chain B, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F09|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
Length = 302
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 341 ETLGRGTIGSTYKAVLE-----SGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVP 395
+ LG+G GS + +G +V VK+L+ + L +F R ++IL L+H N+V
Sbjct: 23 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVK 82
Query: 396 LRA--YFQAKEERLLVYDYFPNGSL 418
+ Y + L+ +Y P GSL
Sbjct: 83 YKGVCYSAGRRNLKLIMEYLPYGSL 107
>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJC|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJD|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 19
pdb|3TJD|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 19
Length = 298
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 341 ETLGRGTIGSTYKAVLE-----SGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVP 395
+ LG+G GS + +G +V VK+L+ + L +F R ++IL L+H N+V
Sbjct: 19 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVK 78
Query: 396 LRA--YFQAKEERLLVYDYFPNGSL 418
+ Y + L+ +Y P GSL
Sbjct: 79 YKGVCYSAGRRNLKLIMEYLPYGSL 103
>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
pdb|4HGE|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
Length = 300
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 341 ETLGRGTIGSTYKAVLE-----SGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVP 395
+ LG+G GS + +G +V VK+L+ + L +F R ++IL L+H N+V
Sbjct: 21 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVK 80
Query: 396 LRA--YFQAKEERLLVYDYFPNGSL 418
+ Y + L+ +Y P GSL
Sbjct: 81 YKGVCYSAGRRNLKLIMEYLPYGSL 105
>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|2B7A|B Chain B, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|3FUP|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3FUP|B Chain B, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 293
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 341 ETLGRGTIGSTYKAVLE-----SGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVP 395
+ LG+G GS + +G +V VK+L+ + L +F R ++IL L+H N+V
Sbjct: 14 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVK 73
Query: 396 LRA--YFQAKEERLLVYDYFPNGSL 418
+ Y + L+ +Y P GSL
Sbjct: 74 YKGVCYSAGRRNLKLIMEYLPYGSL 98
>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
pdb|4AQC|B Chain B, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
Length = 301
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 341 ETLGRGTIGSTYKAVLE-----SGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVP 395
+ LG+G GS + +G +V VK+L+ + L +F R ++IL L+H N+V
Sbjct: 22 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVK 81
Query: 396 LRA--YFQAKEERLLVYDYFPNGSL 418
+ Y + L+ +Y P GSL
Sbjct: 82 YKGVCYSAGRRNLKLIMEYLPYGSL 106
>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1I|B Chain B, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 326
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 341 ETLGRGTIGSTYKAVLE-----SGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVP 395
+ LG+G GS + +G +V VK+L+ + L +F R ++IL L+H N+V
Sbjct: 47 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVK 106
Query: 396 LRA--YFQAKEERLLVYDYFPNGSL 418
+ Y + L+ +Y P GSL
Sbjct: 107 YKGVCYSAGRRNLKLIMEYLPYGSL 131
>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii
Inhibtor Nvp-Bbt594
Length = 295
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 341 ETLGRGTIGSTYKAVLE-----SGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVP 395
+ LG+G GS + +G +V VK+L+ + L +F R ++IL L+H N+V
Sbjct: 16 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVK 75
Query: 396 LRA--YFQAKEERLLVYDYFPNGSL 418
+ Y + L+ +Y P GSL
Sbjct: 76 YKGVCYSAGRRNLKLIMEYLPYGSL 100
>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain
pdb|2XA4|B Chain B, Inhibitors Of Jak2 Kinase Domain
Length = 298
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 341 ETLGRGTIGSTYKAVLE-----SGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVP 395
+ LG+G GS + +G +V VK+L+ + L +F R ++IL L+H N+V
Sbjct: 19 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVK 78
Query: 396 LRA--YFQAKEERLLVYDYFPNGSL 418
+ Y + L+ +Y P GSL
Sbjct: 79 YKGVCYSAGRRNLKLIMEYLPYGSL 103
>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
pdb|3Q32|B Chain B, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
Length = 301
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 341 ETLGRGTIGSTYKAVLE-----SGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVP 395
+ LG+G GS + +G +V VK+L+ + L +F R ++IL L+H N+V
Sbjct: 16 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVK 75
Query: 396 LRA--YFQAKEERLLVYDYFPNGSL 418
+ Y + L+ +Y P GSL
Sbjct: 76 YKGVCYSAGRRNLKLIMEYLPYGSL 100
>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E63|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E64|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
Length = 293
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 341 ETLGRGTIGSTYKAVLE-----SGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVP 395
+ LG+G GS + +G +V VK+L+ + L +F R ++IL L+H N+V
Sbjct: 15 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVK 74
Query: 396 LRA--YFQAKEERLLVYDYFPNGSL 418
+ Y + L+ +Y P GSL
Sbjct: 75 YKGVCYSAGRRNLKLIMEYLPYGSL 99
>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
Length = 298
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 341 ETLGRGTIGSTYKAVLE-----SGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVP 395
+ LG+G GS + +G +V VK+L+ + L +F R ++IL L+H N+V
Sbjct: 17 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVK 76
Query: 396 LRA--YFQAKEERLLVYDYFPNGSL 418
+ Y + L+ +Y P GSL
Sbjct: 77 YKGVCYSAGRRNLKLIMEYLPYGSL 101
>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A
1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor
Length = 303
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 341 ETLGRGTIGSTYKAVLE-----SGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVP 395
+ LG+G GS + +G +V VK+L+ + L +F R ++IL L+H N+V
Sbjct: 20 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVK 79
Query: 396 LRA--YFQAKEERLLVYDYFPNGSL 418
+ Y + L+ +Y P GSL
Sbjct: 80 YKGVCYSAGRRNLKLIMEYLPYGSL 104
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 25/185 (13%)
Query: 18 KSSLDPFNRLSSWKNGDRDVCKWQGIK--------ECLNGRVTKLV-------LEHLNLT 62
++ LD LS++ G V +G++ E + ++T L + L L+
Sbjct: 37 QADLDGITTLSAFGTG---VTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELS 93
Query: 63 GTLDEKV--INQLDQLRVLSFKGNSISGQIPNLLGLVNLKSLYLNDNNFSGKFPGSLSSL 120
G + V I L ++ L I+ P L GL NL+ LYL+ N + P L+ L
Sbjct: 94 GNPLKNVSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGL 150
Query: 121 HRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDNKFTGPIPPFNQTNLRFFNVSNNDLS 180
L+ + + N Q+S P L+NL +L L DNK + P + NL ++ NN +S
Sbjct: 151 TNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQIS 208
Query: 181 GQIPV 185
P+
Sbjct: 209 DVSPL 213
>pdb|4GT4|A Chain A, Structure Of Unliganded, Inactive Ror2 Kinase Domain
pdb|4GT4|B Chain B, Structure Of Unliganded, Inactive Ror2 Kinase Domain
Length = 308
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 341 ETLGRGTIGSTYKAVL------ESGFIVTVKRLKD-ARYPRLEEFRRHMDILGRLRHPNL 393
E LG G YK L E V +K LKD A P EEFR + RL+HPN+
Sbjct: 32 EELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNV 91
Query: 394 VPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
V L + +++ Y +G L +
Sbjct: 92 VCLLGVVTKDQPLSMIFSYCSHGDLHEFL 120
>pdb|3ZZW|A Chain A, Crystal Structure Of The Kinase Domain Of Ror2
pdb|3ZZW|B Chain B, Crystal Structure Of The Kinase Domain Of Ror2
Length = 289
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 341 ETLGRGTIGSTYKAVL------ESGFIVTVKRLKD-ARYPRLEEFRRHMDILGRLRHPNL 393
E LG G YK L E V +K LKD A P EEFR + RL+HPN+
Sbjct: 15 EELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNV 74
Query: 394 VPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
V L + +++ Y +G L +
Sbjct: 75 VCLLGVVTKDQPLSMIFSYCSHGDLHEFL 103
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 344 GRGTIGSTYKAVLESGFIVTVKRLKDARYPRLEEFRRHMD----ILGRLRHPNLVPLRAY 399
G G G YK + + V VK+L EE ++ D + + +H NLV L +
Sbjct: 31 GEGGFGVVYKGYVNNT-TVAVKKLAAMVDITTEELKQQFDQEIKVXAKCQHENLVELLGF 89
Query: 400 FQAKEERLLVYDYFPNGSLFSLIHGTCCLATRP 432
++ LVY Y PNGSL + +C T P
Sbjct: 90 SSDGDDLCLVYVYXPNGSLLDRL--SCLDGTPP 120
>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439
pdb|2VRX|B Chain B, Structure Of Aurora B Kinase In Complex With Zm447439
Length = 285
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 343 LGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRL---EEFRRHMDILGRLRHPNLVPLRA 398
LG+G G+ Y A ++ FI+ +K L ++ + + RR ++I LRHPN++ +
Sbjct: 23 LGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYN 82
Query: 399 YFQAKEERLLVYDYFPNGSLF 419
YF ++ L+ ++ P G L+
Sbjct: 83 YFHDRKRIYLMLEFAPRGELY 103
>pdb|2BFX|A Chain A, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2BFX|B Chain B, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2VGP|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGP|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGO|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|2VGO|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|3ZTX|A Chain A, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen.
pdb|3ZTX|B Chain B, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen
Length = 284
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 343 LGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRL---EEFRRHMDILGRLRHPNLVPLRA 398
LG+G G+ Y A ++ FI+ +K L ++ + + RR ++I LRHPN++ +
Sbjct: 22 LGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYN 81
Query: 399 YFQAKEERLLVYDYFPNGSLF 419
YF ++ L+ ++ P G L+
Sbjct: 82 YFHDRKRIYLMLEFAPRGELY 102
>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin.
pdb|2BFY|B Chain B, Complex Of Aurora-B With Incenp And Hesperidin
Length = 284
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 343 LGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRL---EEFRRHMDILGRLRHPNLVPLRA 398
LG+G G+ Y A ++ FI+ +K L ++ + + RR ++I LRHPN++ +
Sbjct: 22 LGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYN 81
Query: 399 YFQAKEERLLVYDYFPNGSLF 419
YF ++ L+ ++ P G L+
Sbjct: 82 YFHDRKRIYLMLEFAPRGELY 102
>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of
CalciumCALMODULIN ACTIVATED KINASE II
pdb|2BDW|B Chain B, Crystal Structure Of The Auto-Inhibited Kinase Domain Of
CalciumCALMODULIN ACTIVATED KINASE II
Length = 362
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 49/114 (42%), Gaps = 18/114 (15%)
Query: 324 GDQQMSYSLEDLLKASA---------ETLGRGTIGSTYKAV-----LE-SGFIVTVKRLK 368
G QQM E ++ AS E LG+G + V LE + I+ K+L
Sbjct: 9 GGQQMGRGSEFMMNASTKFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLS 68
Query: 369 DARYPRLEEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
+ +LE R I +L+HPN+V L Q + LV+D G LF I
Sbjct: 69 ARDFQKLE---REARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDI 119
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 4/124 (3%)
Query: 38 CKWQGIKEC---LNGRVTKLVLEHLNLTGTLDEKVINQLDQLRVLSFKGNSISGQIPNLL 94
C +G+KE + T+L+L L + + +L L L K N ++G PN
Sbjct: 15 CTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF 74
Query: 95 -GLVNLKSLYLNDNNFSGKFPGSLSSLHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQ 153
G +++ L L +N LH+LK + L +NQIS +P S +L L L L
Sbjct: 75 EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134
Query: 154 DNKF 157
N F
Sbjct: 135 SNPF 138
>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6D|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6Q|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
pdb|4E6Q|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
Length = 298
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 343 LGRGTIGSTYKAVLE-----SGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPLR 397
LG+G GS + +G +V VK+L+ + L +F R ++IL L+H N+V +
Sbjct: 21 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 80
Query: 398 A--YFQAKEERLLVYDYFPNGSL 418
Y + L+ ++ P GSL
Sbjct: 81 GVCYSAGRRNLKLIMEFLPYGSL 103
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 98 NLKSLYLNDNNFSGKFPGSLSSLHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDNKF 157
++ LYL+ N F+ P LS+ L +I L+NN+IS +S SN+ +L L L N+
Sbjct: 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 158 TGPIPP--FNQ-TNLRFFNVSNNDLS 180
IPP F+ +LR ++ ND+S
Sbjct: 91 RC-IPPRTFDGLKSLRLLSLHGNDIS 115
>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Lambda-Fl172
pdb|3FY0|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Dw1
pdb|4DAW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With The Ruthenium
Phthalimide Complex
Length = 297
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 341 ETLGRGTIGSTYKAV-LESGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPLRAY 399
E +G+G G+ Y A+ + +G V ++++ + P+ E + ++ ++PN+V
Sbjct: 26 EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDS 85
Query: 400 FQAKEERLLVYDYFPNGSLFSLIHGTC 426
+ +E +V +Y GSL ++ TC
Sbjct: 86 YLVGDELWVVMEYLAGGSLTDVVTETC 112
>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1F3M|D Chain D, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1YHW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With One Point
Mutations (K299r)
Length = 297
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 341 ETLGRGTIGSTYKAV-LESGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPLRAY 399
E +G+G G+ Y A+ + +G V ++++ + P+ E + ++ ++PN+V
Sbjct: 26 EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDS 85
Query: 400 FQAKEERLLVYDYFPNGSLFSLIHGTC 426
+ +E +V +Y GSL ++ TC
Sbjct: 86 YLVGDELWVVMEYLAGGSLTDVVTETC 112
>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point
Mutations (K299r, T423e)
pdb|2HY8|1 Chain 1, Pak1 Complex With St2001
Length = 297
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 341 ETLGRGTIGSTYKAV-LESGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPLRAY 399
E +G+G G+ Y A+ + +G V ++++ + P+ E + ++ ++PN+V
Sbjct: 26 EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDS 85
Query: 400 FQAKEERLLVYDYFPNGSLFSLIHGTC 426
+ +E +V +Y GSL ++ TC
Sbjct: 86 YLVGDELWVVMEYLAGGSLTDVVTETC 112
>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain
pdb|3Q53|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain In Complex
With Atp
Length = 306
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 341 ETLGRGTIGSTYKAV-LESGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPLRAY 399
E +G+G G+ Y A+ + +G V ++++ + P+ E + ++ ++PN+V
Sbjct: 27 EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDS 86
Query: 400 FQAKEERLLVYDYFPNGSLFSLIHGTC 426
+ +E +V +Y GSL ++ TC
Sbjct: 87 YLVGDELWVVMEYLAGGSLTDVVTETC 113
>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain
pdb|3Q4Z|B Chain B, Structure Of Unphosphorylated Pak1 Kinase Domain
Length = 306
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 341 ETLGRGTIGSTYKAV-LESGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPLRAY 399
E +G+G G+ Y A+ + +G V ++++ + P+ E + ++ ++PN+V
Sbjct: 27 EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDS 86
Query: 400 FQAKEERLLVYDYFPNGSLFSLIHGTC 426
+ +E +V +Y GSL ++ TC
Sbjct: 87 YLVGDELWVVMEYLAGGSLTDVVTETC 113
>pdb|2QG5|A Chain A, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
pdb|2QG5|B Chain B, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
pdb|2QG5|D Chain D, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
Length = 294
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 11/114 (9%)
Query: 314 GLGSLVFCGP--GDQQMSYSLEDLLKASAETLGRGTIGSTYKAVLESGFIV-TVKRLKDA 370
G +L F G GD Y+LE+ T+GRG+ G AV + I K++
Sbjct: 10 GRENLYFQGSTKGDINQYYTLEN-------TIGRGSWGEVKIAVQKGTRIRRAAKKIPKY 62
Query: 371 RYPRLEEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFS-LIH 423
++ F++ ++I+ L HPN++ L F+ + LV + G LF ++H
Sbjct: 63 FVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMELCTGGELFERVVH 116
>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
Gleevec
pdb|3HMI|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
5-Amino-3-{[4-
(Aminosulfonyl)phenyl]amino}-N-(2,
6-Difluorophenyl)-1h-1,2,4- Triazole-1-Carbothioamide
pdb|2XYN|A Chain A, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|B Chain B, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|C Chain C, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
Length = 292
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 343 LGRGTIGSTYKAVLES-GFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPLRAYFQ 401
LG G G Y V + V VK LK+ +EEF + ++ ++HPNLV L
Sbjct: 40 LGGGQYGEVYVGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCT 98
Query: 402 AKEERLLVYDYFPNGSLFSLI 422
+ +V +Y P G+L +
Sbjct: 99 LEPPFYIVTEYMPYGNLLDYL 119
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 341 ETLGRGTIGSTYKAVLE-SGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPLRAY 399
E LG G G ++ +G K + E R+ + + LRHP LV L
Sbjct: 163 EELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDA 222
Query: 400 FQAKEERLLVYDYFPNGSLFSLI 422
F+ E +++Y++ G LF +
Sbjct: 223 FEDDNEMVMIYEFMSGGELFEKV 245
>pdb|3F3Z|A Chain A, Crystal Structure Of Cryptosporidium Parvum Calcium
Dependent Protein Kinase Cgd7_1840 In Presence Of
Indirubin E804
Length = 277
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 324 GDQQMSYSLEDLLKASAETLGRGTIGSTYKAVLESGFIV-TVKRLKDARYPRLEEFRRHM 382
GD Y+LE+ T+GRG+ G AV + I K++ ++ F++ +
Sbjct: 5 GDINQYYTLEN-------TIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEI 57
Query: 383 DILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFS-LIH 423
+I+ L HPN++ L F+ + LV + G LF ++H
Sbjct: 58 EIMKSLDHPNIIRLYETFEDNTDIYLVMELCTGGELFERVVH 99
>pdb|3BHY|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase
3 (Dapk3) In Complex With A Beta-Carboline Ligand
pdb|3BQR|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase
3 (Dapk3) In Complex With An Imidazo-Pyridazine Ligand
Length = 283
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 376 EEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
EE R ++IL +RHPN++ L F+ K + +L+ + G LF +
Sbjct: 53 EEIEREVNILREIRHPNIITLHDIFENKTDVVLILELVSGGELFDFL 99
>pdb|2J90|A Chain A, Crystal Structure Of Human Zip Kinase In Complex With A
Tetracyclic Pyridone Inhibitor (pyridone 6)
pdb|2J90|B Chain B, Crystal Structure Of Human Zip Kinase In Complex With A
Tetracyclic Pyridone Inhibitor (pyridone 6)
Length = 304
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 376 EEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
EE R ++IL +RHPN++ L F+ K + +L+ + G LF +
Sbjct: 74 EEIEREVNILREIRHPNIITLHDIFENKTDVVLILELVSGGELFDFL 120
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 8/128 (6%)
Query: 53 KLVLEHLNLTGTLDEKVINQLDQLRVLSFKGNSISGQIPNLLGLVNLKSLYLNDNNFSGK 112
K VL N+T T+ + ++Q+ L+ SI G + L NL + ++N +
Sbjct: 27 KTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG----VEYLNNLTQINFSNNQLTDI 82
Query: 113 FPGSLSSLHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDNKFTGPIPPFNQTNLRFF 172
P L +L +L I++ NNQI+ P L+NL L L L +N+ T P N TNL
Sbjct: 83 TP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 138
Query: 173 NVSNNDLS 180
+S+N +S
Sbjct: 139 ELSSNTIS 146
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 73 LDQLRVLSFKGNSISGQIPNLLGLVNLKSLYLNDNNFSGKFPGSLSSLHRLKIIVLANNQ 132
L +L L N IS P L GL L +L LN+N P +S+L L + L N
Sbjct: 263 LTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN 319
Query: 133 ISGPIPESLSNLKRLYMLYLQDNKFTGPIPPFNQTNLRFFNVSNNDLSGQIPV 185
IS P +S+L +L L+ +NK + N TN+ + + +N +S P+
Sbjct: 320 ISDISP--VSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPL 370
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 120 LHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDNKFTGPIPPFNQTNLRFFNVSNNDL 179
L+ L I +NNQ++ P L NL +L + + +N+ P N TNL + NN +
Sbjct: 66 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 123
Query: 180 SGQIPV 185
+ P+
Sbjct: 124 TDIDPL 129
>pdb|1YRP|A Chain A, Catalytic Domain Of Human Zip Kinase Phosphorylated At
Thr265
pdb|1YRP|B Chain B, Catalytic Domain Of Human Zip Kinase Phosphorylated At
Thr265
Length = 278
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 376 EEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
EE R ++IL +RHPN++ L F+ K + +L+ + G LF +
Sbjct: 60 EEIEREVNILREIRHPNIITLHDIFENKTDVVLILELVSGGELFDFL 106
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 8/128 (6%)
Query: 53 KLVLEHLNLTGTLDEKVINQLDQLRVLSFKGNSISGQIPNLLGLVNLKSLYLNDNNFSGK 112
K VL N+T T+ + ++Q+ L+ SI G + L NL + ++N +
Sbjct: 28 KTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG----VEYLNNLTQINFSNNQLTDI 83
Query: 113 FPGSLSSLHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDNKFTGPIPPFNQTNLRFF 172
P L +L +L I++ NNQI+ P L+NL L L L +N+ T P N TNL
Sbjct: 84 TP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 139
Query: 173 NVSNNDLS 180
+S+N +S
Sbjct: 140 ELSSNTIS 147
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 73 LDQLRVLSFKGNSISGQIPNLLGLVNLKSLYLNDNNFSGKFPGSLSSLHRLKIIVLANNQ 132
L +L L N IS P L GL L +L LN+N P +S+L L + L N
Sbjct: 264 LTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN 320
Query: 133 ISGPIPESLSNLKRLYMLYLQDNKFTGPIPPFNQTNLRFFNVSNNDLSGQIPV 185
IS P +S+L +L L+ +NK + N TN+ + + +N +S P+
Sbjct: 321 ISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPL 371
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 120 LHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDNKFTGPIPPFNQTNLRFFNVSNNDL 179
L+ L I +NNQ++ P L NL +L + + +N+ P N TNL + NN +
Sbjct: 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 124
Query: 180 SGQIPV 185
+ P+
Sbjct: 125 TDIDPL 130
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 8/128 (6%)
Query: 53 KLVLEHLNLTGTLDEKVINQLDQLRVLSFKGNSISGQIPNLLGLVNLKSLYLNDNNFSGK 112
K VL N+T T+ + ++Q+ L+ SI G + L NL + ++N +
Sbjct: 23 KTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG----VEYLNNLTQINFSNNQLTDI 78
Query: 113 FPGSLSSLHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDNKFTGPIPPFNQTNLRFF 172
P L +L +L I++ NNQI+ P L+NL L L L +N+ T P N TNL
Sbjct: 79 TP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 134
Query: 173 NVSNNDLS 180
+S+N +S
Sbjct: 135 ELSSNTIS 142
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 73 LDQLRVLSFKGNSISGQIPNLLGLVNLKSLYLNDNNFSGKFPGSLSSLHRLKIIVLANNQ 132
L +L L N IS P L GL L +L LN+N P +S+L L + L N
Sbjct: 260 LTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN 316
Query: 133 ISGPIPESLSNLKRLYMLYLQDNKFTGPIPPFNQTNLRFFNVSNNDLSGQIPV 185
IS P +S+L +L L+ +NK + N TN+ + + +N +S P+
Sbjct: 317 ISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPL 367
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 5/136 (3%)
Query: 50 RVTKLVLEHLNLTGTLDEKVINQLDQLRVLSFKGNSISGQIPNLLGLVNLKSLYLNDNNF 109
+TKLV +N D + L L L+ N I+ P L L NL L L+ N
Sbjct: 83 NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTI 141
Query: 110 SGKFPGSLSSLHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDNKFTGPIPPFNQTNL 169
S +LS L L+ + ++NQ++ P L+NL L L + NK + TNL
Sbjct: 142 SDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNL 197
Query: 170 RFFNVSNNDLSGQIPV 185
+NN +S P+
Sbjct: 198 ESLIATNNQISDITPL 213
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 341 ETLGRGTIGSTYKAVLE-SGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPLRAY 399
E LG G G ++ +G K + E R+ + + LRHP LV L
Sbjct: 57 EELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDA 116
Query: 400 FQAKEERLLVYDYFPNGSLFSLI 422
F+ E +++Y++ G LF +
Sbjct: 117 FEDDNEMVMIYEFMSGGELFEKV 139
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 8/128 (6%)
Query: 53 KLVLEHLNLTGTLDEKVINQLDQLRVLSFKGNSISGQIPNLLGLVNLKSLYLNDNNFSGK 112
K VL N+T T+ + ++Q+ L+ SI G + L NL + ++N +
Sbjct: 23 KTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG----VEYLNNLTQINFSNNQLTDI 78
Query: 113 FPGSLSSLHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDNKFTGPIPPFNQTNLRFF 172
P L +L +L I++ NNQI+ P L+NL L L L +N+ T P N TNL
Sbjct: 79 TP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 134
Query: 173 NVSNNDLS 180
+S+N +S
Sbjct: 135 ELSSNTIS 142
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 73 LDQLRVLSFKGNSISGQIPNLLGLVNLKSLYLNDNNFSGKFPGSLSSLHRLKIIVLANNQ 132
L +L L N IS P L GL L +L LN+N P +S+L L + L N
Sbjct: 260 LTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN 316
Query: 133 ISGPIPESLSNLKRLYMLYLQDNKFTGPIPPFNQTNLRFFNVSNNDLSGQIPV 185
IS P +S+L +L L+ +NK + N TN+ + + +N +S P+
Sbjct: 317 ISDISP--VSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISDLTPL 367
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 5/136 (3%)
Query: 50 RVTKLVLEHLNLTGTLDEKVINQLDQLRVLSFKGNSISGQIPNLLGLVNLKSLYLNDNNF 109
+TKLV +N D + L L L+ N I+ P L L NL L L+ N
Sbjct: 83 NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTI 141
Query: 110 SGKFPGSLSSLHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDNKFTGPIPPFNQTNL 169
S +LS L L+ + ++NQ++ P L+NL L L + NK + TNL
Sbjct: 142 SDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNL 197
Query: 170 RFFNVSNNDLSGQIPV 185
+NN +S P+
Sbjct: 198 ESLIATNNQISDITPL 213
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 8/128 (6%)
Query: 53 KLVLEHLNLTGTLDEKVINQLDQLRVLSFKGNSISGQIPNLLGLVNLKSLYLNDNNFSGK 112
K VL N+T T+ + ++Q+ L+ SI G + L NL + ++N +
Sbjct: 23 KTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG----VEYLNNLTQINFSNNQLTDI 78
Query: 113 FPGSLSSLHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDNKFTGPIPPFNQTNLRFF 172
P L +L +L I++ NNQI+ P L+NL L L L +N+ T P N TNL
Sbjct: 79 TP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 134
Query: 173 NVSNNDLS 180
+S+N +S
Sbjct: 135 ELSSNTIS 142
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 73 LDQLRVLSFKGNSISGQIPNLLGLVNLKSLYLNDNNFSGKFPGSLSSLHRLKIIVLANNQ 132
L +L L N IS P L GL L +L LN+N P +S+L L + L N
Sbjct: 260 LTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN 316
Query: 133 ISGPIPESLSNLKRLYMLYLQDNKFTGPIPPFNQTNLRFFNVSNNDLSGQIPV 185
IS P +S+L +L L+ +NK + N TN+ + + +N +S P+
Sbjct: 317 ISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPL 367
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 120 LHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDNKFTGPIPPFNQTNLRFFNVSNNDL 179
L+ L I +NNQ++ P L NL +L + + +N+ P N TNL + NN +
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 119
Query: 180 SGQIPV 185
+ P+
Sbjct: 120 TDIDPL 125
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 5/136 (3%)
Query: 50 RVTKLVLEHLNLTGTLDEKVINQLDQLRVLSFKGNSISGQIPNLLGLVNLKSLYLNDNNF 109
+TKLV +N D + L L L+ N I+ P L L NL L L+ N
Sbjct: 83 NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTI 141
Query: 110 SGKFPGSLSSLHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDNKFTGPIPPFNQTNL 169
S +LS L L+ + ++NQ++ P L+NL L L + NK + TNL
Sbjct: 142 SDI--SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNL 197
Query: 170 RFFNVSNNDLSGQIPV 185
+NN +S P+
Sbjct: 198 ESLIATNNQISDITPL 213
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 8/128 (6%)
Query: 53 KLVLEHLNLTGTLDEKVINQLDQLRVLSFKGNSISGQIPNLLGLVNLKSLYLNDNNFSGK 112
K VL N+T T+ + ++Q+ L+ SI G + L NL + ++N +
Sbjct: 23 KTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG----VEYLNNLTQINFSNNQLTDI 78
Query: 113 FPGSLSSLHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDNKFTGPIPPFNQTNLRFF 172
P L +L +L I++ NNQI+ P L+NL L L L +N+ T P N TNL
Sbjct: 79 TP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 134
Query: 173 NVSNNDLS 180
+S+N +S
Sbjct: 135 ELSSNTIS 142
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 73 LDQLRVLSFKGNSISGQIPNLLGLVNLKSLYLNDNNFSGKFPGSLSSLHRLKIIVLANNQ 132
L +L L N IS P L GL L +L LN+N P +S+L L + L N
Sbjct: 259 LTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN 315
Query: 133 ISGPIPESLSNLKRLYMLYLQDNKFTGPIPPFNQTNLRFFNVSNNDLSGQIPV 185
IS P +S+L +L L+ +NK + N TN+ + + +N +S P+
Sbjct: 316 ISDISP--VSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISDLTPL 366
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 120 LHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDNKFTGPIPPFNQTNLRFFNVSNNDL 179
L+ L I +NNQ++ P L NL +L + + +N+ P N TNL + NN +
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 119
Query: 180 SGQIPV 185
+ P+
Sbjct: 120 TDIDPL 125
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 8/128 (6%)
Query: 53 KLVLEHLNLTGTLDEKVINQLDQLRVLSFKGNSISGQIPNLLGLVNLKSLYLNDNNFSGK 112
K VL N+T T+ + ++Q+ L+ SI G + L NL + ++N +
Sbjct: 23 KTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG----VEYLNNLTQINFSNNQLTDI 78
Query: 113 FPGSLSSLHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDNKFTGPIPPFNQTNLRFF 172
P L +L +L I++ NNQI+ P L+NL L L L +N+ T P N TNL
Sbjct: 79 TP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 134
Query: 173 NVSNNDLS 180
+S+N +S
Sbjct: 135 ELSSNTIS 142
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 73 LDQLRVLSFKGNSISGQIPNLLGLVNLKSLYLNDNNFSGKFPGSLSSLHRLKIIVLANNQ 132
L +L L N IS P L GL L +L LN+N P +S+L L + L N
Sbjct: 259 LTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN 315
Query: 133 ISGPIPESLSNLKRLYMLYLQDNKFTGPIPPFNQTNLRFFNVSNNDLSGQIPV 185
IS P +S+L +L L+ +NK + N TN+ + + +N +S P+
Sbjct: 316 ISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPL 366
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 120 LHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDNKFTGPIPPFNQTNLRFFNVSNNDL 179
L+ L I +NNQ++ P L NL +L + + +N+ P N TNL + NN +
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 119
Query: 180 SGQIPV 185
+ P+
Sbjct: 120 TDIDPL 125
>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded
Form)
Length = 325
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 333 EDLLKASAETLGRGTIGSTYKAV-LESGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHP 391
ED + E LG G G YKA E+ + K + LE++ +DIL HP
Sbjct: 36 EDFWEIIGE-LGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHP 94
Query: 392 NLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
N+V L F + ++ ++ G++ +++
Sbjct: 95 NIVKLLDAFYYENNLWILIEFCAGGAVDAVM 125
>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5-
Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide
Length = 325
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 333 EDLLKASAETLGRGTIGSTYKAV-LESGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHP 391
ED + E LG G G YKA E+ + K + LE++ +DIL HP
Sbjct: 36 EDFWEIIGE-LGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHP 94
Query: 392 NLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
N+V L F + ++ ++ G++ +++
Sbjct: 95 NIVKLLDAFYYENNLWILIEFCAGGAVDAVM 125
>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (
Diphosphorylated Form) Bound To 5- Amino-3-((4-(
Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide
Length = 325
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 333 EDLLKASAETLGRGTIGSTYKAV-LESGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHP 391
ED + E LG G G YKA E+ + K + LE++ +DIL HP
Sbjct: 36 EDFWEIIGE-LGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHP 94
Query: 392 NLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
N+V L F + ++ ++ G++ +++
Sbjct: 95 NIVKLLDAFYYENNLWILIEFCAGGAVDAVM 125
>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Adp Bound
Length = 311
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 341 ETLGRGTIGSTYKAVLESGFIVTVKRLK-DARYPRLEEFR-RHMDILGRLRHPNLVPLRA 398
E +G GT G YKA G IV +KR++ DA + R + +L L HPN+V L
Sbjct: 27 EKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLID 86
Query: 399 YFQAKEERLLVYDYF 413
++ LV+++
Sbjct: 87 VIHSERCLTLVFEFM 101
>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Indirubin 3'-Monoxime Bound
Length = 313
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 341 ETLGRGTIGSTYKAVLESGFIVTVKRLK-DARYPRLEEFR-RHMDILGRLRHPNLVPLRA 398
E +G GT G YKA G IV +KR++ DA + R + +L L HPN+V L
Sbjct: 27 EKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLID 86
Query: 399 YFQAKEERLLVYDYF 413
++ LV+++
Sbjct: 87 VIHSERCLTLVFEFM 101
>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis
Length = 394
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 12/89 (13%)
Query: 334 DLLKASAETLGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPN 392
++ + + +G G+ G ++A ++ES + K L+D R+ R + I+ ++HPN
Sbjct: 39 EIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKRFKN-----RELQIMRIVKHPN 93
Query: 393 LVPLRAYFQA----KEERL--LVYDYFPN 415
+V L+A+F + K+E LV +Y P
Sbjct: 94 VVDLKAFFYSNGDKKDEVFLNLVLEYVPE 122
>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk-1 Bound To Amp-Pcp
pdb|2Z7R|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Staurosporine
pdb|2Z7S|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Purvalnol A
Length = 321
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 341 ETLGRGTIGSTY--KAVL--ESGFIVTVKRLKDARYPRLEEFRRHM--DILGRLRHPNLV 394
+ LG+G+ G + + V +SG + +K LK A + R M DIL + HP +V
Sbjct: 34 KVLGQGSFGKVFLVRKVTRPDSGHLYAMKVLKKATLKVRDRVRTKMERDILADVNHPFVV 93
Query: 395 PLRAYFQAKEERLLVYDYFPNGSLFS 420
L FQ + + L+ D+ G LF+
Sbjct: 94 KLHYAFQTEGKLYLILDFLRGGDLFT 119
>pdb|3KK9|A Chain A, Camkii Substrate Complex B
Length = 282
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 341 ETLGRGTIGSTYKAV-----LE-SGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLV 394
E LG+G + V LE + I+ K+L + +LE R I +L+HPN+V
Sbjct: 11 EELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLE---REARICRKLQHPNIV 67
Query: 395 PLRAYFQAKEERLLVYDYFPNGSLFSLI 422
L Q + LV+D G LF I
Sbjct: 68 RLHDSIQEESFHYLVFDLVTGGELFEDI 95
>pdb|3KK8|A Chain A, Camkii Substrate Complex A
Length = 284
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 341 ETLGRGTIGSTYKAV-----LE-SGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLV 394
E LG+G + V LE + I+ K+L + +LE R I +L+HPN+V
Sbjct: 12 EELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLE---REARICRKLQHPNIV 68
Query: 395 PLRAYFQAKEERLLVYDYFPNGSLFSLI 422
L Q + LV+D G LF I
Sbjct: 69 RLHDSIQEESFHYLVFDLVTGGELFEDI 96
>pdb|3KL8|A Chain A, Camkiintide Inhibitor Complex
pdb|3KL8|C Chain C, Camkiintide Inhibitor Complex
pdb|3KL8|E Chain E, Camkiintide Inhibitor Complex
pdb|3KL8|G Chain G, Camkiintide Inhibitor Complex
pdb|3KL8|I Chain I, Camkiintide Inhibitor Complex
Length = 269
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 341 ETLGRGTIGSTYKAV-----LE-SGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLV 394
E LG+G + V LE + I+ K+L + +LE R I +L+HPN+V
Sbjct: 12 EELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLE---REARICRKLQHPNIV 68
Query: 395 PLRAYFQAKEERLLVYDYFPNGSLFSLI 422
L Q + LV+D G LF I
Sbjct: 69 RLHDSIQEESFHYLVFDLVTGGELFEDI 96
>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1)
pdb|3OMV|B Chain B, Crystal Structure Of C-Raf (Raf-1)
Length = 307
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
Query: 322 GPGDQQMSYSLEDLLKASAETLGRGTIGSTYKAVLESGFIVTVKRLKDARYPRLEEFRRH 381
G D + +E + +G G+ G+ YK V + ++ D + + FR
Sbjct: 23 GQRDSSYYWEIEASEVMLSTRIGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQFQAFRNE 82
Query: 382 MDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIH 423
+ +L + RH N++ Y K+ +V + SL+ +H
Sbjct: 83 VAVLRKTRHVNILLFMGYM-TKDNLAIVTQWCEGSSLYKHLH 123
>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain
pdb|4AT3|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Cpd5n
pdb|4AT4|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Ex429
pdb|4AT5|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Gw2580
Length = 299
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 343 LGRGTIGSTYKAVL------ESGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPL 396
LG G G + A + +V VK LKDA ++F R ++L L+H ++V
Sbjct: 21 LGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKF 80
Query: 397 RAYFQAKEERLLVYDYFPNGSL--FSLIHG 424
+ ++V++Y +G L F HG
Sbjct: 81 YGVCVEGDPLIMVFEYMKHGDLNKFLRAHG 110
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 87/204 (42%), Gaps = 34/204 (16%)
Query: 5 VSRSGDTEALLSLKSSLDPFNRLSSWKNGDRDVCKWQGIKECLNG--RVTKLVLEHLNLT 62
V+ +G + S+ S + F+++ +C + ++E +G T+L+ H N
Sbjct: 26 VAETGSAQTCPSVCSCSNQFSKV---------ICVRKNLREVPDGISTNTRLLNLHENQI 76
Query: 63 GTLDEKVINQLDQLRVLSFKGNSI-SGQIPNLLGLVNLKSLYLNDNNFSGKFPGSLSSLH 121
+ L L +L N I + +I GL NL +L L DN + G+ L
Sbjct: 77 QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLS 136
Query: 122 RLKIIVLANNQISGPIPE------------SLSNLKRLYMLYLQDNKFTGPIPPFNQTNL 169
+LK + L NN I IP L LKRL Y+ + F G +NL
Sbjct: 137 KLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRLS--YISEGAFEG------LSNL 187
Query: 170 RFFNVSNNDLSGQIPVTPALVRFN 193
R+ N++ +L +IP L++ +
Sbjct: 188 RYLNLAMCNLR-EIPNLTPLIKLD 210
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Query: 53 KLVLEHLNLTGTLDEKVINQLDQLRVLSFKGNSISGQIPNLLGLVNLKSLYLNDNNFSGK 112
+L L L + E L LR L+ ++ +IPNL L+ L L L+ N+ S
Sbjct: 164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAI 222
Query: 113 FPGSLSSLHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDNKFT 158
PGS L L+ + + +QI + NL+ L + L N T
Sbjct: 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 73/172 (42%), Gaps = 33/172 (19%)
Query: 37 VCKWQGIKECLNGRVTKLVLEHLNLTGT--LDEKVINQLDQLRVLSFKGNSISGQIPNLL 94
V QGI+ N LE+LNL G D ++ L +L L N I+ I L
Sbjct: 56 VASIQGIEYLTN-------LEYLNLNGNQITDISPLSNLVKLTNLYIGTNKIT-DISALQ 107
Query: 95 GLVNLKSLYLNDNNFSGKFP-GSLSSLHRLKIIVLANNQISGPIPES------------- 140
L NL+ LYLN++N S P +L+ + L + AN+ +S P S
Sbjct: 108 NLTNLRELYLNEDNISDISPLANLTKXYSLNLG--ANHNLSDLSPLSNXTGLNYLTVTES 165
Query: 141 -------LSNLKRLYMLYLQDNKFTGPIPPFNQTNLRFFNVSNNDLSGQIPV 185
++NL LY L L N+ P + T+L +F N ++ PV
Sbjct: 166 KVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPV 217
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 77 RVLSFKGNSISGQIPNLL-GLVNLKSLYLNDNNFSGKFPGSLSSLHRLKIIVLANNQIS- 134
++L N I+ P + L+NLK LYL N G SL +L ++ L NQ++
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 135 --GPIPESLSNLKRLYMLYLQDNKFT 158
+ + L +LK L+M NK T
Sbjct: 103 LPSAVFDRLVHLKELFMCC---NKLT 125
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 97 VNLKSLYLNDNNFSGKFPGSLSSLHRLKIIVLANNQISGPIPESL-SNLKRLYMLYLQDN 155
N + LYL+DN + PG SL LK + L +NQ+ G +P + +L +L +L L N
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTN 98
Query: 156 KFT 158
+ T
Sbjct: 99 QLT 101
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 341 ETLGRGTIGSTYKAVLESGFIVTVKRLKDA--RYPRLEEFRRHMDILGRLRHPNLVPLRA 398
E +GRG G KA + V +K+++ R + E R+ L R+ HPN+V L
Sbjct: 15 EVVGRGAFGVVCKAKWRAK-DVAIKQIESESERKAFIVELRQ----LSRVNHPNIVKL-- 67
Query: 399 YFQAKEERLLVYDYFPNGSLFSLIHGT 425
Y LV +Y GSL++++HG
Sbjct: 68 YGACLNPVCLVMEYAEGGSLYNVLHGA 94
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 341 ETLGRGTIGSTYKAVLESGFIVTVKRLKDA--RYPRLEEFRRHMDILGRLRHPNLVPLRA 398
E +GRG G KA + V +K+++ R + E R+ L R+ HPN+V L
Sbjct: 14 EVVGRGAFGVVCKAKWRAK-DVAIKQIESESERKAFIVELRQ----LSRVNHPNIVKL-- 66
Query: 399 YFQAKEERLLVYDYFPNGSLFSLIHGT 425
Y LV +Y GSL++++HG
Sbjct: 67 YGACLNPVCLVMEYAEGGSLYNVLHGA 93
>pdb|2W4O|A Chain A, Crystal Structure Of Human Camk4 In Complex With 4-Amino(
Sulfamoyl-Phenylamino)-Triazole-Carbothioic Acid (2,6-
Difluoro-Phenyl)-Amide)
Length = 349
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 331 SLEDLLKASAETLGRGTIGSTY----KAVLESGFIVTVKRLKDARYPRLEEFRRHMDILG 386
+L D + +E LGRG Y K + + +K+ D + R E + +L
Sbjct: 50 ALSDFFEVESE-LGRGATSIVYRCKQKGTQKPYALKVLKKTVDKKIVRTE-----IGVLL 103
Query: 387 RLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
RL HPN++ L+ F+ E LV + G LF I
Sbjct: 104 RLSHPNIIKLKEIFETPTEISLVLELVTGGELFDRI 139
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 4/113 (3%)
Query: 49 GRVTKLVLEHLNLTGTLDEKVINQLDQLRVLSFKGNSISGQIPN--LLGLVNLKSLYLND 106
GR+ L L+ L L + L L+ L + N++ +P+ L NL L+L+
Sbjct: 105 GRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHG 162
Query: 107 NNFSGKFPGSLSSLHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDNKFTG 159
N S + LH L ++L N+++ P + +L RL LYL N +
Sbjct: 163 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215
>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase
pdb|3COM|B Chain B, Crystal Structure Of Mst1 Kinase
Length = 314
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 341 ETLGRGTIGSTYKAVL-ESGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPLRAY 399
E LG G+ GS YKA+ E+G IV +K++ L+E + + I+ + P++V
Sbjct: 35 EKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGS 92
Query: 400 FQAKEERLLVYDYFPNGSLFSLI 422
+ + +V +Y GS+ +I
Sbjct: 93 YFKNTDLWIVMEYCGAGSVSDII 115
>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase
Catalytic Subunit From Saccharomyces Cerevisiae
Length = 318
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 330 YSLEDLLKASAETLGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRLEEFRRHMD---IL 385
YSL+D TLG G+ G + +G +K LK RL++ D +L
Sbjct: 3 YSLQDF--QILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLML 60
Query: 386 GRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
+ HP ++ + FQ ++ ++ DY G LFSL+
Sbjct: 61 SIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLL 97
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 4/113 (3%)
Query: 49 GRVTKLVLEHLNLTGTLDEKVINQLDQLRVLSFKGNSISGQIPN--LLGLVNLKSLYLND 106
GR+ L L+ L L + L L+ L + N++ +P+ L NL L+L+
Sbjct: 104 GRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHG 161
Query: 107 NNFSGKFPGSLSSLHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDNKFTG 159
N S + LH L ++L N+++ P + +L RL LYL N +
Sbjct: 162 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 214
>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Novel Bosutinib Isoform 1, Previously Thought
To Be Bosutinib
Length = 293
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 343 LGRGTIGSTYKAV-LESGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPLRAYFQ 401
LG G G YKA E+G + K ++ LE++ ++IL HP +V L +
Sbjct: 19 LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYY 78
Query: 402 AKEERLLVYDYFPNGSLFSLI 422
+ ++ ++ P G++ +++
Sbjct: 79 HDGKLWIMIEFCPGGAVDAIM 99
>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
pdb|2V7A|B Chain B, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
Length = 286
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 322 GPGDQQMSYSLEDLLKASAETLGRGTIGSTYKAVLES-GFIVTVKRLKDARYPRLEEFRR 380
GP + +E LG G G Y+ V + V VK LK+ +EEF +
Sbjct: 1 GPSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLK 59
Query: 381 HMDILGRLRHPNLVPL 396
++ ++HPNLV L
Sbjct: 60 EAAVMKEIKHPNLVQL 75
>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Su11274
pdb|4AOT|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4AOT|B Chain B, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4EQU|A Chain A, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
pdb|4EQU|B Chain B, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
Length = 302
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 343 LGRGTIGSTYKAV-LESGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPLRAYFQ 401
LG G G YKA E+G + K ++ LE++ ++IL HP +V L +
Sbjct: 27 LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYY 86
Query: 402 AKEERLLVYDYFPNGSLFSLI 422
+ ++ ++ P G++ +++
Sbjct: 87 HDGKLWIMIEFCPGGAVDAIM 107
>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|B Chain B, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|C Chain C, Crystal Structure Of The Human Cdkl1 Kinase Domain
Length = 311
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 343 LGRGTIGSTYKAV-LESGFIVTVKR-LKDARYPRLEEFR-RHMDILGRLRHPNLVPLRAY 399
+G G+ G +K ++G IV +K+ L+ P +++ R + +L +L+HPNLV L
Sbjct: 11 IGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEV 70
Query: 400 FQAKEERLLVYDYFPNGSLFSL 421
F+ K LV++Y + L L
Sbjct: 71 FRRKRRLHLVFEYCDHTVLHEL 92
>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK6|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 343 LGRGTIGSTYKAVLES-GFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPL 396
LG G G Y+ V + V VK LK+ +EEF + ++ ++HPNLV L
Sbjct: 19 LGGGQFGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQL 72
>pdb|2Y0A|A Chain A, Structure Of Dapk1 Construct Residues 1-304
Length = 326
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 376 EEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
E+ R + IL ++HPN++ L ++ K + +L+ + G LF +
Sbjct: 59 EDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFL 105
>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant
Abl Mutant In Complex With The Aurora Kinase Inhibitor
Vx-680
Length = 287
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 343 LGRGTIGSTYKAVLES-GFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPL 396
LG G G Y+ V + V VK LK+ +EEF + ++ ++HPNLV L
Sbjct: 22 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQL 75
>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
pdb|2E2B|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
Length = 293
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 343 LGRGTIGSTYKAVLES-GFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPL 396
LG G G Y+ V + V VK LK+ +EEF + ++ ++HPNLV L
Sbjct: 26 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQL 79
>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
pdb|3V5Q|B Chain B, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
Length = 297
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 343 LGRGTIGSTYKAVL------ESGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPL 396
LG G G + A + +V VK LKD ++F+R ++L L+H ++V
Sbjct: 23 LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKF 82
Query: 397 RAYFQAKEERLLVYDYFPNGSL--FSLIHG 424
+ ++V++Y +G L F HG
Sbjct: 83 YGVCGDGDPLIMVFEYMKHGDLNKFLRAHG 112
>pdb|2XUU|A Chain A, Crystal Structure Of A Dap-Kinase 1 Mutant
Length = 334
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 376 EEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
E+ R + IL ++HPN++ L ++ K + +L+ + G LF +
Sbjct: 59 EDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFL 105
>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
pdb|3PYY|B Chain B, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
Length = 298
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 343 LGRGTIGSTYKAVLES-GFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPL 396
LG G G Y+ V + V VK LK+ +EEF + ++ ++HPNLV L
Sbjct: 34 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQL 87
>pdb|2XZS|A Chain A, Death Associated Protein Kinase 1 Residues 1-312
pdb|2XZS|B Chain B, Death Associated Protein Kinase 1 Residues 1-312
Length = 312
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 376 EEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
E+ R + IL ++HPN++ L ++ K + +L+ + G LF +
Sbjct: 59 EDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFL 105
>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
pdb|2GQG|B Chain B, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
Length = 278
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 343 LGRGTIGSTYKAVLES-GFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPL 396
LG G G Y+ V + V VK LK+ +EEF + ++ ++HPNLV L
Sbjct: 26 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQL 79
>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2F|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
Length = 287
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 343 LGRGTIGSTYKAVLES-GFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPL 396
LG G G Y+ V + V VK LK+ +EEF + ++ ++HPNLV L
Sbjct: 23 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQL 76
>pdb|2X0G|A Chain A, X-ray Structure Of A Dap-kinase Calmodulin Complex
Length = 334
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 376 EEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
E+ R + IL ++HPN++ L ++ K + +L+ + G LF +
Sbjct: 59 EDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFL 105
>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
pdb|2HIW|B Chain B, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
Length = 287
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 343 LGRGTIGSTYKAVLES-GFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPL 396
LG G G Y+ V + V VK LK+ +EEF + ++ ++HPNLV L
Sbjct: 23 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQL 76
>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK7|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 277
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 343 LGRGTIGSTYKAVLES-GFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPL 396
LG G G Y+ V + V VK LK+ +EEF + ++ ++HPNLV L
Sbjct: 19 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQL 72
>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1FPU|B Chain B, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1IEP|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1IEP|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1M52|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1M52|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1OPJ|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPJ|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|2HZN|A Chain A, Abl Kinase Domain In Complex With Nvp-Afg210
pdb|3K5V|A Chain A, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3K5V|B Chain B, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3MS9|A Chain A, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MS9|B Chain B, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MSS|A Chain A, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|B Chain B, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|C Chain C, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|D Chain D, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
Length = 293
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 343 LGRGTIGSTYKAVLES-GFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPL 396
LG G G Y+ V + V VK LK+ +EEF + ++ ++HPNLV L
Sbjct: 26 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQL 79
>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970
pdb|2HZI|B Chain B, Abl Kinase Domain In Complex With Pd180970
pdb|3CS9|A Chain A, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|B Chain B, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|C Chain C, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|D Chain D, Human Abl Kinase In Complex With Nilotinib
Length = 277
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 343 LGRGTIGSTYKAVLES-GFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPL 396
LG G G Y+ V + V VK LK+ +EEF + ++ ++HPNLV L
Sbjct: 25 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQL 78
>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|C Chain C, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|D Chain D, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|3UE4|A Chain A, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
pdb|3UE4|B Chain B, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
Length = 287
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 343 LGRGTIGSTYKAVLES-GFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPL 396
LG G G Y+ V + V VK LK+ +EEF + ++ ++HPNLV L
Sbjct: 23 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQL 76
>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A
Dfg-Out Inhibitor Ap24534
Length = 284
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 343 LGRGTIGSTYKAVLES-GFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPL 396
LG G G Y+ V + V VK LK+ +EEF + ++ ++HPNLV L
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQL 74
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 343 LGRGTIGSTYKAVLES-GFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPL 396
LG G G Y+ V + V VK LK+ +EEF + ++ ++HPNLV L
Sbjct: 228 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQL 281
>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRI|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRK|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dp- 987
Length = 277
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 343 LGRGTIGSTYKAVLES-GFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPL 396
LG G G Y+ V + V VK LK+ +EEF + ++ ++HPNLV L
Sbjct: 26 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQL 79
>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
pdb|3QRJ|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
Length = 277
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 343 LGRGTIGSTYKAVLES-GFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPL 396
LG G G Y+ V + V VK LK+ +EEF + ++ ++HPNLV L
Sbjct: 26 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQL 79
>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
pdb|3OY3|B Chain B, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
Length = 284
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 343 LGRGTIGSTYKAVLES-GFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPL 396
LG G G Y+ V + V VK LK+ +EEF + ++ ++HPNLV L
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQL 74
>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|B Chain B, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|C Chain C, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|D Chain D, Structure Of The Osr1 Kinase, A Hypertension Drug Target
Length = 303
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 347 TIGSTYKAVLESGFI------VTVKRLK-DARYPRLEEFRRHMDILGRLRHPNLVPLRAY 399
IGS AV+++ + V +KR+ + ++E + + + + HPN+V
Sbjct: 22 VIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTS 81
Query: 400 FQAKEERLLVYDYFPNGSLFSLI 422
F K+E LV GS+ +I
Sbjct: 82 FVVKDELWLVMKLLSGGSVLDII 104
>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|B Chain B, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|C Chain C, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|D Chain D, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HZ4|A Chain A, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|B Chain B, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|C Chain C, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
Length = 273
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 343 LGRGTIGSTYKAVLES-GFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPL 396
LG G G Y+ V + V VK LK+ +EEF + ++ ++HPNLV L
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQL 74
>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|B Chain B, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|C Chain C, Human Trka In Complex With The Inhibitor Az-23
Length = 329
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 343 LGRGTIGSTYKAVL------ESGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPL 396
LG G G + A + +V VK LK+A ++F+R ++L L+H ++V
Sbjct: 49 LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 108
Query: 397 RAYFQAKEERLLVYDYFPNGSL 418
L+V++Y +G L
Sbjct: 109 FGVCTEGRPLLMVFEYMRHGDL 130
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 343 LGRGTIGSTYKAVLES-GFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPL 396
LG G G Y+ V + V VK LK+ +EEF + ++ ++HPNLV L
Sbjct: 225 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQL 278
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 343 LGRGTIGSTYKAVLES-GFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPLRAYFQ 401
LG G G Y+ V + V VK LK+ +EEF + ++ ++HPNLV L
Sbjct: 267 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCT 325
Query: 402 AKEERLLVYDYFPNGSLFSLI 422
+ ++ ++ G+L +
Sbjct: 326 REPPFYIITEFMTYGNLLDYL 346
>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK3|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 343 LGRGTIGSTYKAVLES-GFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPL 396
LG G G Y+ V + V VK LK+ +EEF + ++ ++HPNLV L
Sbjct: 19 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQL 72
>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|2QOH|B Chain B, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|3KF4|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KF4|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
Length = 288
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 343 LGRGTIGSTYKAVLES-GFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPL 396
LG G G Y+ V + V VK LK+ +EEF + ++ ++HPNLV L
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQL 74
>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|B Chain B, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|C Chain C, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|D Chain D, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
Length = 290
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 347 TIGSTYKAVLESGFI------VTVKRLK-DARYPRLEEFRRHMDILGRLRHPNLVPLRAY 399
IGS AV+++ + V +KR+ + ++E + + + + HPN+V
Sbjct: 17 VIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTS 76
Query: 400 FQAKEERLLVYDYFPNGSLFSLI 422
F K+E LV GS+ +I
Sbjct: 77 FVVKDELWLVMKLLSGGSVLDII 99
>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound
With Ppy-A
pdb|3IK3|A Chain A, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
pdb|3IK3|B Chain B, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
Length = 288
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 343 LGRGTIGSTYKAVLES-GFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPL 396
LG G G Y+ V + V VK LK+ +EEF + ++ ++HPNLV L
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQL 74
>pdb|3GU4|A Chain A, Crystal Structure Of Dapkq23v-Amppnp
pdb|3GU5|A Chain A, Crystal Structure Of Dapkq23v-Amppnp-Mg2+
pdb|3GU6|A Chain A, Crystal Structure Of Dapkq23v-Adp
pdb|3GU7|A Chain A, Crystal Structure Of Dapkq23v-Adp-Mg2+
Length = 295
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 376 EEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
E+ R + IL ++HPN++ L ++ K + +L+ + G LF +
Sbjct: 59 EDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFL 105
>pdb|2YAK|A Chain A, Structure Of Death-Associated Protein Kinase 1 (Dapk1) In
Complex With A Ruthenium Octasporine Ligand (Osv)
pdb|2Y4P|A Chain A, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|B Chain B, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|C Chain C, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|D Chain D, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|3ZXT|A Chain A, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|B Chain B, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|C Chain C, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|D Chain D, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
Length = 285
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 376 EEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
E+ R + IL ++HPN++ L ++ K + +L+ + G LF +
Sbjct: 59 EDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFL 105
>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082
pdb|2HZ0|B Chain B, Abl Kinase Domain In Complex With Nvp-Aeg082
Length = 270
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 343 LGRGTIGSTYKAVLES-GFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPL 396
LG G G Y+ V + V VK LK+ +EEF + ++ ++HPNLV L
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQL 74
>pdb|2W4K|A Chain A, X-Ray Structure Of A Dap-Kinase 2-302
Length = 302
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 376 EEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
E+ R + IL ++HPN++ L ++ K + +L+ + G LF +
Sbjct: 59 EDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFL 105
>pdb|3DFC|B Chain B, Crystal Structure Of A Glycine-Rich Loop Mutant Of The
Death Associated Protein Kinase Catalytic Domain With
Amppnp
pdb|3DGK|A Chain A, Crystal Structure Of A Glycine-Rich Loop Mutant Of The
Death Associated Protein Kinase Catalytic Domain
Length = 295
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 376 EEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
E+ R + IL ++HPN++ L ++ K + +L+ + G LF +
Sbjct: 59 EDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFL 105
>pdb|3F5U|A Chain A, Crystal Structure Of The Death Associated Protein Kinase
In Complex With Amppnp And Mg2+
Length = 295
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 376 EEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
E+ R + IL ++HPN++ L ++ K + +L+ + G LF +
Sbjct: 59 EDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFL 105
>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka
pdb|4F0I|B Chain B, Crystal Structure Of Apo Trka
Length = 300
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 343 LGRGTIGSTYKAVL------ESGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPL 396
LG G G + A + +V VK LK+A ++F+R ++L L+H ++V
Sbjct: 20 LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 79
Query: 397 RAYFQAKEERLLVYDYFPNGSL 418
L+V++Y +G L
Sbjct: 80 FGVCTEGRPLLMVFEYMRHGDL 101
>pdb|1P4F|A Chain A, Death Associated Protein Kinase Catalytic Domain With
Bound Inhibitor Fragment
Length = 293
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 376 EEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
E+ R + IL ++HPN++ L ++ K + +L+ + G LF +
Sbjct: 58 EDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFL 104
>pdb|1IG1|A Chain A, 1.8a X-Ray Structure Of Ternary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue And Mn.
pdb|1JKL|A Chain A, 1.6a X-Ray Structure Of Binary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue
pdb|1JKS|A Chain A, 1.5a X-Ray Structure Of Apo Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKT|A Chain A, Tetragonal Crystal Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKT|B Chain B, Tetragonal Crystal Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKK|A Chain A, 2.4a X-Ray Structure Of Ternary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue And Mg.
pdb|3F5G|A Chain A, Crystal Structure Of Death Associated Protein Kinase In
Complex With Adp And Mg2+
pdb|3EH9|A Chain A, Crystal Structure Of Death Associated Protein Kinase
Complexed With Adp
pdb|3EHA|A Chain A, Crystal Structure Of Death Associated Protein Kinase
Complexed With Amppnp
Length = 294
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 376 EEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
E+ R + IL ++HPN++ L ++ K + +L+ + G LF +
Sbjct: 58 EDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFL 104
>pdb|2W4J|A Chain A, X-Ray Structure Of A Dap-Kinase 2-277
Length = 277
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 376 EEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
E+ R + IL ++HPN++ L ++ K + +L+ + G LF +
Sbjct: 59 EDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFL 105
>pdb|1WVW|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
pdb|1WVX|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
pdb|1WVY|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
Length = 278
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 376 EEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
E+ R + IL ++HPN++ L ++ K + +L+ + G LF +
Sbjct: 59 EDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFL 105
>pdb|3MA6|A Chain A, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence
Of 3brb-Pp1
pdb|3MA6|B Chain B, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence
Of 3brb-Pp1
Length = 298
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 314 GLGSLVFCGPG--DQQMSYSLEDLLKASAETLGRGTIGSTY----KAVLESGFIVTVKRL 367
G +L F GPG Q + D K LG+G+ G K + + + +
Sbjct: 10 GRENLYFQGPGMFVQHSTAIFSDRYKGQ-RVLGKGSFGEVILCKDKITGQECAVKVISKR 68
Query: 368 KDARYPRLEEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
+ + E R + +L +L HPN++ L +F+ K LV + + G LF I
Sbjct: 69 QVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEI 123
>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain
Length = 306
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 343 LGRGTIGSTYKAVL------ESGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPL 396
LG G G + A + +V VK LK+A ++F+R ++L L+H ++V
Sbjct: 26 LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 85
Query: 397 RAYFQAKEERLLVYDYFPNGSL 418
L+V++Y +G L
Sbjct: 86 FGVCTEGRPLLMVFEYMRHGDL 107
>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A
Thiazolopyrimidine Inhibitor
Length = 324
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 341 ETLGRGTIGSTYKAVLESGFI---VTVKRLKD-ARYPRLEEFRRHMDILGRL-RHPNLVP 395
+ +G G G KA ++ + +KR+K+ A +F +++L +L HPN++
Sbjct: 28 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIIN 87
Query: 396 LRAYFQAKEERLLVYDYFPNGSLFSLIHGTCCLATRP 432
L + + L +Y P+G+L + + L T P
Sbjct: 88 LLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDP 124
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 99 LKSLYLNDNNFSGKFPGSLSSLHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDNKFT 158
+ + L N PG+ S +L+ I L+NNQIS P++ L+ L L L NK T
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 114 PGSLSSLHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDNKFT 158
PG+ S +L+ I L+NNQIS P++ L+ L L L NK T
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
>pdb|1FVR|A Chain A, Tie2 Kinase Domain
pdb|1FVR|B Chain B, Tie2 Kinase Domain
Length = 327
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 341 ETLGRGTIGSTYKAVLESGFI---VTVKRLKD-ARYPRLEEFRRHMDILGRL-RHPNLVP 395
+ +G G G KA ++ + +KR+K+ A +F +++L +L HPN++
Sbjct: 31 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIIN 90
Query: 396 LRAYFQAKEERLLVYDYFPNGSLFSLIHGTCCLATRP 432
L + + L +Y P+G+L + + L T P
Sbjct: 91 LLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDP 127
>pdb|2UV2|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To
4-(4-(
5-Cyclopropyl-1h-Pyrazol-3-Ylamino)-Quinazolin-2-
Ylamino)- Phenyl)-Acetonitrile
Length = 287
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 341 ETLGR-GTIGSTYKAV-LESGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPLRA 398
E +G G G YKA E+ + K + LE++ +DIL HPN+V L
Sbjct: 15 EIIGELGDFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLD 74
Query: 399 YFQAKEERLLVYDYFPNGSLFSLI 422
F + ++ ++ G++ +++
Sbjct: 75 AFYYENNLWILIEFCAGGAVDAVM 98
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 79 LSFKGNSISGQIPNLLG-LVNLKSLYLNDNNFSGKFPGSLSSLHRLKIIVLANNQISGPI 137
L N I+ P + LVNL+ LY N N + G L +L + L +N +
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 138 PESLSNLKRLYMLYLQDNKF 157
+ NLK L +YL +N +
Sbjct: 98 RGAFDNLKSLTHIYLYNNPW 117
>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin
pdb|4GUE|A Chain A, Structure Of N-terminal Kinase Domain Of Rsk2 With
Flavonoid Glycoside Quercitrin
Length = 305
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 341 ETLGRGTIGSTYKAVLESGF----IVTVKRLKDARYPRLEEFRRHM--DILGRLRHPNLV 394
+ LG+G+ G + SG + +K LK A + R M DIL + HP +V
Sbjct: 31 KVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIV 90
Query: 395 PLRAYFQAKEERLLVYDYFPNGSLFS 420
L FQ + + L+ D+ G LF+
Sbjct: 91 KLHYAFQTEGKLYLILDFLRGGDLFT 116
>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase
pdb|3COK|B Chain B, Crystal Structure Of Plk4 Kinase
Length = 278
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 343 LGRGTIGSTYKA-VLESGFIVTVKRL-KDARYP--RLEEFRRHMDILGRLRHPNLVPLRA 398
LG+G+ Y+A + +G V +K + K A Y ++ + + I +L+HP+++ L
Sbjct: 19 LGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYN 78
Query: 399 YFQAKEERLLVYDYFPNGSL 418
YF+ LV + NG +
Sbjct: 79 YFEDSNYVYLVLEMCHNGEM 98
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 65 LDEKVINQLDQLRVLSFKGNSISGQIPNLLGLVNLKSLYLNDNNFSGKFPGSLSSLHRLK 124
+ E L LR L+ G IPNL LV L+ L L+ N PGS L L+
Sbjct: 147 ISEAAFEGLVNLRYLNL-GMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLR 205
Query: 125 IIVLANNQISGPIPESLSNLKRLYMLYLQDNKF 157
+ L + Q++ + +LK L L L N
Sbjct: 206 KLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 55/134 (41%), Gaps = 23/134 (17%)
Query: 72 QLDQLRVLSFKGNSISG-QIPNLLGLVNLKSLYLNDNNFSGKFPGSLSSLHRLKIIVLAN 130
L L +L N + ++ GL +L +L L DN + + L +L+ + L N
Sbjct: 57 HLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRN 116
Query: 131 NQISGPIPE------------SLSNLKRLYMLYLQDNKFTGPIPPFNQTNLRFFNVSNND 178
N I IP L LKRL Y+ + F G + NLR+ N+ +
Sbjct: 117 NPIES-IPSYAFNRVPSLRRLDLGELKRLE--YISEAAFEGLV------NLRYLNLGMCN 167
Query: 179 LSGQIPVTPALVRF 192
L IP ALVR
Sbjct: 168 LK-DIPNLTALVRL 180
>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex
With Flavonoid Glycoside Sl0101
Length = 304
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 341 ETLGRGTIGSTYKAVLESGF----IVTVKRLKDARYPRLEEFRRHM--DILGRLRHPNLV 394
+ LG+G+ G + SG + +K LK A + R M DIL + HP +V
Sbjct: 30 KVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIV 89
Query: 395 PLRAYFQAKEERLLVYDYFPNGSLFS 420
L FQ + + L+ D+ G LF+
Sbjct: 90 KLHYAFQTEGKLYLILDFLRGGDLFT 115
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 65 LDEKVINQLDQLRVLSFKGNSISGQIPNLLGLVNLKSLYLNDNNFSGKFPGSLSSLHRLK 124
+ E L LR L+ G IPNL LV L+ L L+ N PGS L L+
Sbjct: 147 ISEAAFEGLVNLRYLNL-GMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLR 205
Query: 125 IIVLANNQISGPIPESLSNLKRLYMLYLQDNKF 157
+ L + Q++ + +LK L L L N
Sbjct: 206 KLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 55/134 (41%), Gaps = 23/134 (17%)
Query: 72 QLDQLRVLSFKGNSISG-QIPNLLGLVNLKSLYLNDNNFSGKFPGSLSSLHRLKIIVLAN 130
L L +L N + ++ GL +L +L L DN + + L +L+ + L N
Sbjct: 57 HLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRN 116
Query: 131 NQISGPIPE------------SLSNLKRLYMLYLQDNKFTGPIPPFNQTNLRFFNVSNND 178
N I IP L LKRL Y+ + F G + NLR+ N+ +
Sbjct: 117 NPIES-IPSYAFNRVPSLRRLDLGELKRLE--YISEAAFEGLV------NLRYLNLGMCN 167
Query: 179 LSGQIPVTPALVRF 192
L IP ALVR
Sbjct: 168 LK-DIPNLTALVRL 180
>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2OSC|A Chain A, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2P4I|A Chain A, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|2P4I|B Chain B, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|3L8P|A Chain A, Crystal Structure Of Cytoplasmic Kinase Domain Of Tie2
Complexed With Inhibitor Cep11207
Length = 317
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 341 ETLGRGTIGSTYKAVLESGFI---VTVKRLKD-ARYPRLEEFRRHMDILGRL-RHPNLVP 395
+ +G G G KA ++ + +KR+K+ A +F +++L +L HPN++
Sbjct: 21 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIIN 80
Query: 396 LRAYFQAKEERLLVYDYFPNGSLFSLIHGTCCLATRP 432
L + + L +Y P+G+L + + L T P
Sbjct: 81 LLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDP 117
>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420
Length = 504
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 376 EEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
EE + +L L HPN++ L F+ K+ LV +++ G LF I
Sbjct: 91 EEIYNEISLLKSLDHPNIIKLFDVFEDKKYFYLVTEFYEGGELFEQI 137
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 73 LDQLRVLSFKGNSISG-QIPNLLGLVNLKSLYLNDNNFSGKFPGSLSSLHRLKIIVLANN 131
L L VL N ++ + L GL L+ LYL N PG L+ +L+ + LANN
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 132 QISGPIPESLSNLKRLYMLYLQDNKF 157
Q++ L+ L+ L L LQ+N
Sbjct: 159 QLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 73 LDQLRVLSFKGNSISG-QIPNLLGLVNLKSLYLNDNNFSGKFPGSLSSLHRLKIIVLANN 131
L L VL N ++ + L GL L+ LYL N PG L+ +L+ + LANN
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 132 QISGPIPESLSNLKRLYMLYLQDNKF 157
Q++ L+ L+ L L LQ+N
Sbjct: 159 QLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3GU8|A Chain A, Crystal Structure Of Dapkl93g With N6-Cyclopentyladenosine
pdb|3GUB|A Chain A, Crystal Structure Of Dapkl93g Complexed With N6-(2-
Phenylethyl)adenosine
Length = 295
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 376 EEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
E+ R + IL ++HPN++ L ++ K + +L+ + G LF +
Sbjct: 59 EDIEREVSILKEIQHPNVITLHEVYENKTDVILIGELVAGGELFDFL 105
>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5
pdb|1V0B|B Chain B, Crystal Structure Of The T198a Mutant Of Pfpk5
Length = 288
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 341 ETLGRGTIGSTYKAVLESGFIVTVKRLK----DARYPRLEEFRRHMDILGRLRHPNLVPL 396
E +G GT G YKA G +K+++ D P R + IL L+H N+V L
Sbjct: 8 EKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTT--IREISILKELKHSNIVKL 65
Query: 397 RAYFQAKEERLLVYDYF 413
K+ +LV+++
Sbjct: 66 YDVIHTKKRLVLVFEHL 82
>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5
pdb|1OB3|B Chain B, Structure Of P. Falciparum Pfpk5
pdb|1V0P|A Chain A, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
pdb|1V0P|B Chain B, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
Length = 288
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 341 ETLGRGTIGSTYKAVLESGFIVTVKRLK----DARYPRLEEFRRHMDILGRLRHPNLVPL 396
E +G GT G YKA G +K+++ D P R + IL L+H N+V L
Sbjct: 8 EKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTT--IREISILKELKHSNIVKL 65
Query: 397 RAYFQAKEERLLVYDYF 413
K+ +LV+++
Sbjct: 66 YDVIHTKKRLVLVFEHL 82
>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
pdb|1V0O|B Chain B, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
Length = 288
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 341 ETLGRGTIGSTYKAVLESGFIVTVKRLK----DARYPRLEEFRRHMDILGRLRHPNLVPL 396
E +G GT G YKA G +K+++ D P R + IL L+H N+V L
Sbjct: 8 EKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTT--IREISILKELKHSNIVKL 65
Query: 397 RAYFQAKEERLLVYDYF 413
K+ +LV+++
Sbjct: 66 YDVIHTKKRLVLVFEHL 82
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 68 KVINQLDQLRVLSFKGNSISGQIPNLLG-LVNLKSLYLNDNNFSGKFPGSLSSLHRLKII 126
+V + L +L LS N + + L +LK L L +N G+ L LK +
Sbjct: 127 RVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTL 186
Query: 127 VLANNQISGPIPE-SLSNLKRLYMLYLQDN 155
L NNQ+ +PE + +L++L ML LQ+N
Sbjct: 187 KLDNNQLKR-VPEGAFDSLEKLKMLQLQEN 215
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 3/123 (2%)
Query: 60 NLTGTLDEKVINQLDQLRVLSFKGNSISGQIPNLLG-LVNLKSLYLNDNNFSGKFPGSLS 118
N +L K ++L +LR+L N + + L NL++L++ DN G
Sbjct: 47 NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFD 106
Query: 119 SLHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDNKFTG-PIPPFNQ-TNLRFFNVSN 176
L L + L NQ+ P +L +L L L N+ P F++ T+L+ + N
Sbjct: 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN 166
Query: 177 NDL 179
N L
Sbjct: 167 NQL 169
>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N-
Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2
Length = 325
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 10/103 (9%)
Query: 324 GDQQMSYSLEDLLKASAETLGRGTIGSTYKAVLESGF----IVTVKRLKDARYPRLEEFR 379
G ++ S +LLK LG+G+ G + SG + +K LK A + R
Sbjct: 17 GHEKADPSQFELLKV----LGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVR 72
Query: 380 RHM--DILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFS 420
M DIL + HP +V L FQ + + L+ D+ G LF+
Sbjct: 73 TKMERDILVEVNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFT 115
>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
Length = 292
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/104 (20%), Positives = 43/104 (41%), Gaps = 1/104 (0%)
Query: 322 GPGDQQMSYSLEDLLKASAETLGRGTIGSTYKAVLESGFIVTVKRLKDARYPRLEEFRRH 381
G D + + D + +G G+ G+ YK V + + +L+ F+
Sbjct: 11 GSRDSSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNE 70
Query: 382 MDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGT 425
+ +L + RH N++ Y K + +V + SL+ +H +
Sbjct: 71 VGVLRKTRHVNILLFMGY-STKPQLAIVTQWCEGSSLYHHLHAS 113
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 73 LDQLRVLSFKGNSISG-QIPNLLGLVNLKSLYLNDNNFSGKFPGSLSSLHRLKIIVLANN 131
L L VL N ++ + L GL L+ LYL N PG L+ +L+ + LANN
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 132 QISGPIPESLSN-LKRLYMLYLQDNKF 157
Q++ +P L N L+ L L LQ+N
Sbjct: 159 QLTE-LPAGLLNGLENLDTLLLQENSL 184
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 73 LDQLRVLSFKGNSISG-QIPNLLGLVNLKSLYLNDNNFSGKFPGSLSSLHRLKIIVLANN 131
L L VL N ++ + L GL L+ LYL N PG L+ +L+ + LANN
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 132 QISGPIPESLSN-LKRLYMLYLQDNKF 157
Q++ +P L N L+ L L LQ+N
Sbjct: 159 QLTE-LPAGLLNGLENLDTLLLQENSL 184
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 51 VTKLVLEHLNLTGTLDEKVINQLDQLRVLSFKGNSISGQIPNLL--GLVNLKSLYLNDNN 108
T+L LE N +L V ++L QL LS N I +P+ + L L LYL++N
Sbjct: 30 ATRLELES-NKLQSLPHGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHENK 87
Query: 109 FSGKFPGSLSSLHRLKIIVLANNQISGPIPESL-SNLKRLYMLYLQDNKFTGPIP 162
G L +LK + L NQ+ +P+ + L L ++L N + P
Sbjct: 88 LQSLPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 141
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 46/112 (41%), Gaps = 3/112 (2%)
Query: 70 INQLDQLRVLSFKGNSISGQIPNLLGLVNLKSLYLNDNNFSGKFPGSLSSLHRLKIIVLA 129
I L +R L+ GN + I L L NL L L N G L LK +VL
Sbjct: 59 IQYLPNVRYLALGGNKLH-DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117
Query: 130 NNQISGPIPESLSNLKRLYMLYLQDNKFTG-PIPPFNQ-TNLRFFNVSNNDL 179
NQ+ L L LYL N+ P F++ TNL ++ NN L
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQL 169
>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWV|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWW|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWX|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWY|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWZ|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX0|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX1|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2X9F|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2XVD|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|4BB4|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
Length = 302
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Query: 341 ETLGRGTIGSTYKAVLES----GFIVTVKRLKDARYPRLE-EFRRHMDILGRLRHPNLVP 395
E +G G G + L++ V +K LK R EF I+G+ HPN++
Sbjct: 22 EVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRREFLSEASIMGQFEHPNIIR 81
Query: 396 LRAYFQAKEERLLVYDYFPNGSLFSLI 422
L +++ ++ NG+L S +
Sbjct: 82 LEGVVTNSMPVMILTEFMENGALDSFL 108
>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole
Inhibitor
Length = 291
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 341 ETLGRGTIGSTYKAVLES----GFIVTVKRLKDARYPRLE-EFRRHMDILGRLRHPNLVP 395
E +G G G + L++ V +K LK R EF I+G+ HPN++
Sbjct: 20 EVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRREFLSEASIMGQFEHPNIIR 79
Query: 396 LRAYFQAKEERLLVYDYFPNGSLFSLIH 423
L +++ ++ NG+L S +
Sbjct: 80 LEGVVTNSMPVMILTEFMENGALDSFLR 107
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 60 NLTGTLDEKVINQLDQLRVLSFKGNSISG-QIPNLLGLVNLKSLYLNDNNFSGKFPGSLS 118
N G++D ++ LD+L VL N I + LGL NLK L L+ N G
Sbjct: 333 NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD 392
Query: 119 SLHRLKIIVLANNQISGPIP 138
L L+ I L N P
Sbjct: 393 RLTSLQKIWLHTNPWDCSCP 412
>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
pdb|1MQB|B Chain B, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
Length = 333
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 341 ETLGRGTIGSTYKAVLESG-----FIVTVKRLKDARYPRLE--EFRRHMDILGRLRHPNL 393
+ +G G G YK +L++ V +K LK A Y + +F I+G+ H N+
Sbjct: 50 KVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLK-AGYTEKQRVDFLGEAGIMGQFSHHNI 108
Query: 394 VPLRAYFQAKEERLLVYDYFPNGSL 418
+ L + +++ +Y NG+L
Sbjct: 109 IRLEGVISKYKPMMIITEYMENGAL 133
>pdb|3SOA|A Chain A, Full-Length Human Camkii
Length = 444
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 341 ETLGRGTIGSTYKAV------LESGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLV 394
E LG+G + V + I+ K+L + +LE R I L+HPN+V
Sbjct: 17 EELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLE---REARICRLLKHPNIV 73
Query: 395 PLRAYFQAKEERLLVYDYFPNGSLFSLI 422
L + L++D G LF I
Sbjct: 74 RLHDSISEEGHHYLIFDLVTGGELFEDI 101
>pdb|2YA9|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
pdb|2YA9|B Chain B, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
pdb|2YAA|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Atp
pdb|2YAA|B Chain B, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Atp
pdb|2YAB|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Amp
pdb|2YAB|B Chain B, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Amp
Length = 361
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 376 EEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
EE R + IL ++ HPN++ L ++ + + +L+ + G LF +
Sbjct: 60 EEIEREVSILRQVLHPNIITLHDVYENRTDVVLILELVSGGELFDFL 106
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 76 LRVLSFKGNSISG-QIPNLLGLVNLKSLYLNDNNFSGKFPGSLSSLHRLKIIVLANNQIS 134
L L GN I+ +L GL NL L L+ N+ S GSL++ L+ + L NN++
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
Query: 135 GPIPESLSNLKRLYMLYLQDNKFTG 159
+P L++ K + ++YL +N +
Sbjct: 254 K-VPGGLADHKYIQVVYLHNNNISA 277
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 102 LYLNDNNFSGKFPGSLSSLHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDNKF 157
L L +N + G +L L ++L NN+IS P + + L +L LYL N+
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 96 LVNLKSLYLNDNNFSGKFPGSLSSLHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDN 155
L NL +L L +N S PG+ + L +L+ + L+ NQ+ +PE + K L L + +N
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHEN 131
Query: 156 KFT 158
+ T
Sbjct: 132 EIT 134
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 76 LRVLSFKGNSISG-QIPNLLGLVNLKSLYLNDNNFSGKFPGSLSSLHRLKIIVLANNQIS 134
L L GN I+ +L GL NL L L+ N+ S GSL++ L+ + L NN++
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
Query: 135 GPIPESLSNLKRLYMLYLQDNKFTG 159
+P L++ K + ++YL +N +
Sbjct: 254 K-VPGGLADHKYIQVVYLHNNNISA 277
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 102 LYLNDNNFSGKFPGSLSSLHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDNKF 157
L L +N + G +L L ++L NN+IS P + + L +L LYL N+
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 96 LVNLKSLYLNDNNFSGKFPGSLSSLHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDN 155
L NL +L L +N S PG+ + L +L+ + L+ NQ+ +PE + K L L + +N
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHEN 131
Query: 156 KFT 158
+ T
Sbjct: 132 EIT 134
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%)
Query: 89 QIPNLLGLVNLKSLYLNDNNFSGKFPGSLSSLHRLKIIVLANNQISGPIPESLSNLKRLY 148
+PNL LV L+ L ++ N+F PGS L LK + + N+Q+S + L L
Sbjct: 210 DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269
Query: 149 MLYLQDNKFT 158
L L N +
Sbjct: 270 ELNLAHNNLS 279
>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor
Awl-Ii- 38.3
pdb|4G2F|A Chain A, Human Epha3 Kinase Domain In Complex With Compound 7
pdb|4GK2|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 66
pdb|4GK3|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 87
pdb|4GK4|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 90
Length = 361
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 377 EFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
+F I+G+ HPN++ L + ++V +Y NGSL S +
Sbjct: 80 DFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFL 125
>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound
Structure
Length = 344
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 377 EFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
+F I+G+ HPN++ L + ++V +Y NGSL S +
Sbjct: 63 DFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFL 108
>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PK9|C Chain C, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PMI|A Chain A, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
pdb|2PMI|C Chain C, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
Length = 317
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 341 ETLGRGTIGSTYKAVLES-GFIVTVKRLK-DARYPRLEEFRRHMDILGRLRHPNLVPLRA 398
E LG GT + YK + ++ G V +K +K D+ R + ++ L+H N+V L
Sbjct: 11 EKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYD 70
Query: 399 YFQAKEERLLVYDYFPN 415
+ + LV+++ N
Sbjct: 71 VIHTENKLTLVFEFMDN 87
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 18/118 (15%)
Query: 83 GNSISGQIPNLLGLVNLKSLYLNDNNFSGKFPGSLSSLHRLKIIVLANNQISG--PIPES 140
GN+I ++P L L L ++Y DNN P SL L + +N ++ +P+S
Sbjct: 223 GNNILEELPELQNLPFLTTIYA-DNNLLKTLPDLPPSLEALNV---RDNYLTDLPELPQS 278
Query: 141 LSNLKRLYMLYLQDNKFTG--PIPPFNQTNLRFFNVSNNDLSGQIPVTPALVRFNASS 196
L+ L + +N F+G +PP NL + N S+N++ + P+L N S+
Sbjct: 279 LT------FLDVSENIFSGLSELPP----NLYYLNASSNEIRSLCDLPPSLEELNVSN 326
>pdb|2BUJ|A Chain A, Crystal Structure Of The Human Serine-Threonine Kinase 16
In Complex With Staurosporine
pdb|2BUJ|B Chain B, Crystal Structure Of The Human Serine-Threonine Kinase 16
In Complex With Staurosporine
Length = 317
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
Query: 341 ETLGRGTIGSTYKAVLE---SGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPLR 397
+ LG G G +Y ++E G +KR+ EE +R D+ HPN++ L
Sbjct: 35 QKLGEG--GFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLV 92
Query: 398 AYF----QAKEERLLVYDYFPNGSLFSLI 422
AY AK E L+ +F G+L++ I
Sbjct: 93 AYCLRERGAKHEAWLLLPFFKRGTLWNEI 121
>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3,
Tgme49_105860
Length = 467
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 384 ILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
+L +L HPN++ L +F+ K LV + + G LF I
Sbjct: 57 VLKQLDHPNIMKLYEFFEDKRNYYLVMEVYRGGELFDEI 95
>pdb|2HW6|A Chain A, Crystal Structure Of Mnk1 Catalytic Domain
pdb|2HW6|B Chain B, Crystal Structure Of Mnk1 Catalytic Domain
Length = 307
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 332 LEDLLKASAETLGRGTIGSTYKAV-LESGFIVTVKRL-KDARYPRLEEFRRHMDILGRLR 389
ED+ K ++E LG G AV L++G VK + K A + R FR +
Sbjct: 10 FEDMYKLTSELLGEGAYAKVQGAVSLQNGKEYAVKIIEKQAGHSRSRVFREVETLYQCQG 69
Query: 390 HPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIH 423
+ N++ L +F+ LV++ GS+ + I
Sbjct: 70 NKNILELIEFFEDDTRFYLVFEKLQGGSILAHIQ 103
>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii,
Tgme49_101440, In Presence Of Calcium
Length = 508
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 376 EEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
E R + +L +L HPN++ L +F+ K LV + + G LF I
Sbjct: 95 ESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEI 141
>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From
Toxoplasma Gondii, Tgme49.101440
Length = 507
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 376 EEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
E R + +L +L HPN++ L +F+ K LV + + G LF I
Sbjct: 94 ESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEI 140
>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
Length = 280
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/101 (19%), Positives = 42/101 (41%), Gaps = 1/101 (0%)
Query: 325 DQQMSYSLEDLLKASAETLGRGTIGSTYKAVLESGFIVTVKRLKDARYPRLEEFRRHMDI 384
D + + D + +G G+ G+ YK V + + +L+ F+ + +
Sbjct: 2 DSSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGV 61
Query: 385 LGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGT 425
L + RH N++ Y K + +V + SL+ +H +
Sbjct: 62 LRKTRHVNILLFMGY-STKPQLAIVTQWCEGSSLYHHLHAS 101
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 3/104 (2%)
Query: 58 HLNLTG--TLDEKVINQLDQLRVLSFKGNSISGQIPNLL-GLVNLKSLYLNDNNFSGKFP 114
HL+ G L + L L+ L + N++ N L NL L+L+ N
Sbjct: 110 HLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPE 169
Query: 115 GSLSSLHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDNKFT 158
+ LH L ++L N ++ P + +L RL LYL N +
Sbjct: 170 HAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS 213
>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f
Double Mutant
Length = 373
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 377 EFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
+F I+G+ HPN++ L + ++V +Y NGSL S +
Sbjct: 92 DFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFL 137
>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742f Triple Mutant
Length = 373
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 377 EFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
+F I+G+ HPN++ L + ++V +Y NGSL S +
Sbjct: 92 DFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFL 137
>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|C Chain C, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
Length = 302
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 322 GPGDQQMSYSLEDLLKASAETLGRGTIGSTYKAVLE-SGFIVTVKRLK-DARYPRLEEFR 379
GPG S+E+ K E +G GT G YKA + +G +V +K+++ D +
Sbjct: 1 GPG------SMENFQKV--EKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA 52
Query: 380 -RHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYF 413
R + +L L HPN+V L + + LV+++
Sbjct: 53 IREISLLKELNHPNIVKLLDVIHTENKLYLVFEFL 87
>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596:y602:s768g Triple Mutant
Length = 373
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 377 EFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
+F I+G+ HPN++ L + ++V +Y NGSL S +
Sbjct: 92 DFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFL 137
>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:s768a Triple Mutant
Length = 373
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 377 EFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
+F I+G+ HPN++ L + ++V +Y NGSL S +
Sbjct: 92 DFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFL 137
>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant
Length = 373
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 377 EFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
+F I+G+ HPN++ L + ++V +Y NGSL S +
Sbjct: 92 DFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFL 137
>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant
Length = 373
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 377 EFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
+F I+G+ HPN++ L + ++V +Y NGSL S +
Sbjct: 92 DFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFL 137
>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1)
pdb|3I7B|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Nm-Pp1
pdb|3N51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor
Rm-1-95
pdb|3SX9|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-132
pdb|3SXF|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-89
pdb|3T3U|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-130
pdb|3T3V|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-87
pdb|3UPX|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1300
pdb|3UPZ|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumpless Bki Analog Uw1243
pdb|3V51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Rm-1-176
pdb|3V5P|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1288
pdb|3V5T|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1299
Length = 484
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 376 EEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
E R + +L +L HPN++ L +F+ K LV + + G LF I
Sbjct: 71 ESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEI 117
>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 302
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 322 GPGDQQMSYSLEDLLKASAETLGRGTIGSTYKAVLE-SGFIVTVKRLK-DARYPRLEEFR 379
GPG S+E+ K E +G GT G YKA + +G +V +K+++ D +
Sbjct: 1 GPG------SMENFQKV--EKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA 52
Query: 380 -RHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYF 413
R + +L L HPN+V L + + LV+++
Sbjct: 53 IREISLLKELNHPNIVKLLDVIHTENKLYLVFEFL 87
>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane
Region
pdb|2QO2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Apo Structure
pdb|2QO9|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Phosphorylated, Amp-pnp Bound
Length = 373
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 377 EFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
+F I+G+ HPN++ L + ++V +Y NGSL S +
Sbjct: 92 DFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFL 137
>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnye[ptyr]iw
pdb|3FY2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnyefiw
Length = 371
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 377 EFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
+F I+G+ HPN++ L + ++V +Y NGSL S +
Sbjct: 90 DFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFL 135
>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3D4Q|B Chain B, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3PSB|A Chain A, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PSB|B Chain B, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PPJ|A Chain A, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPJ|B Chain B, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPK|A Chain A, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PPK|B Chain B, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PRF|A Chain A, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRF|B Chain B, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRI|A Chain A, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3PRI|B Chain B, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3Q4C|A Chain A, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3Q4C|B Chain B, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3PSD|A Chain A, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3PSD|B Chain B, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3SKC|A Chain A, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3SKC|B Chain B, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3TV4|A Chain A, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV4|B Chain B, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV6|A Chain A, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|3TV6|B Chain B, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|4E26|A Chain A, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E26|B Chain B, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E4X|A Chain A, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4E4X|B Chain B, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4G9C|A Chain A, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
pdb|4G9C|B Chain B, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
Length = 307
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 322 GPGDQQMSYSLEDLLKASAETLGRGTIGSTYKAVLESGFIVTVKRLKDARYPRLEEFRRH 381
G D + + D + +G G+ G+ YK V + + +L+ F+
Sbjct: 23 GRRDSSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNE 82
Query: 382 MDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIH 423
+ +L + RH N++ Y K + +V + SL+ +H
Sbjct: 83 VGVLRKTRHVNILLFMGY-STKPQLAIVTQWCEGSSLYHHLH 123
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 3/101 (2%)
Query: 64 TLDEKVINQLDQLRVLSFKGNSISGQIPNLL--GLVNLKSLYLNDNNFSGKFPGSLSSLH 121
+L V N+L L L+ N + +PN + L LK L LN N G L
Sbjct: 66 SLPNGVFNKLTSLTYLNLSTNQLQS-LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLT 124
Query: 122 RLKIIVLANNQISGPIPESLSNLKRLYMLYLQDNKFTGPIP 162
+LK + L NQ+ L L ++L DN + P
Sbjct: 125 QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
Length = 289
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/104 (20%), Positives = 43/104 (41%), Gaps = 1/104 (0%)
Query: 322 GPGDQQMSYSLEDLLKASAETLGRGTIGSTYKAVLESGFIVTVKRLKDARYPRLEEFRRH 381
G D + + D + +G G+ G+ YK V + + +L+ F+
Sbjct: 11 GSRDAADDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNE 70
Query: 382 MDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGT 425
+ +L + RH N++ Y A + +V + SL+ +H +
Sbjct: 71 VGVLRKTRHVNILLFMGYSTAP-QLAIVTQWCEGSSLYHHLHAS 113
>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma
Viral Oncogene Homologue (V-Fes) In Complex With
Staurosporine And A Consensus Peptide
Length = 377
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 333 EDLLKASAETLGRGTIGSTYKAVLES-GFIVTVKRLKDARYPRLE-EFRRHMDILGRLRH 390
EDL+ E +GRG G + L + +V VK ++ P L+ +F + IL + H
Sbjct: 114 EDLV--LGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSH 171
Query: 391 PNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
PN+V L K+ +V + G + +
Sbjct: 172 PNIVRLIGVCTQKQPIYIVMELVQGGDFLTFL 203
>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)
pdb|3CBL|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (v- Fes) In Complex With Staurosporine And A
Consensus Peptide
pdb|4E93|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)in Complex With Tae684
Length = 377
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 333 EDLLKASAETLGRGTIGSTYKAVLES-GFIVTVKRLKDARYPRLE-EFRRHMDILGRLRH 390
EDL+ E +GRG G + L + +V VK ++ P L+ +F + IL + H
Sbjct: 114 EDLVLG--EQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSH 171
Query: 391 PNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
PN+V L K+ +V + G + +
Sbjct: 172 PNIVRLIGVCTQKQPIYIVMELVQGGDFLTFL 203
>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
pdb|4G9R|B Chain B, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
Length = 307
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 322 GPGDQQMSYSLEDLLKASAETLGRGTIGSTYKAVLESGFIVTVKRLKDARYPRLEEFRRH 381
G D + + D + +G G+ G+ YK V + + +L+ F+
Sbjct: 23 GRRDSSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNE 82
Query: 382 MDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIH 423
+ +L + RH N++ Y K + +V + SL+ +H
Sbjct: 83 VGVLRKTRHVNILLFMGY-STKPQLAIVTQWCEGSSLYHHLH 123
>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
pdb|3IDP|B Chain B, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
Length = 300
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 322 GPGDQQMSYSLEDLLKASAETLGRGTIGSTYKAVLESGFIVTVKRLKDARYPRLEEFRRH 381
G D + + D + +G G+ G+ YK V + + +L+ F+
Sbjct: 15 GRRDSSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNE 74
Query: 382 MDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIH 423
+ +L + RH N++ Y K + +V + SL+ +H
Sbjct: 75 VGVLRKTRHVNILLFMGY-STKPQLAIVTQWCEGSSLYHHLH 115
>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
pdb|3II5|B Chain B, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
Length = 306
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 322 GPGDQQMSYSLEDLLKASAETLGRGTIGSTYKAVLESGFIVTVKRLKDARYPRLEEFRRH 381
G D + + D + +G G+ G+ YK V + + +L+ F+
Sbjct: 22 GRRDSSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNE 81
Query: 382 MDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIH 423
+ +L + RH N++ Y K + +V + SL+ +H
Sbjct: 82 VGVLRKTRHVNILLFMGY-STKPQLAIVTQWCEGSSLYHHLH 122
>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
pdb|2FB8|B Chain B, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
Length = 281
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
Query: 325 DQQMSYSLEDLLKASAETLGRGTIGSTYKAVLESGFIVTVKRLKDARYPRLEEFRRHMDI 384
D + + D + +G G+ G+ YK V + + +L+ F+ + +
Sbjct: 3 DSSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGV 62
Query: 385 LGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIH 423
L + RH N++ Y K + +V + SL+ +H
Sbjct: 63 LRKTRHVNILLFMGY-STKPQLAIVTQWCEGSSLYHHLH 100
>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
Length = 302
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 322 GPGDQQMSYSLEDLLKASAETLGRGTIGSTYKAVLE-SGFIVTVKRLK-DARYPRLEEFR 379
GPG S+E+ K E +G GT G YKA + +G +V +K+++ D +
Sbjct: 1 GPG------SMENFQKV--EKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA 52
Query: 380 -RHMDILGRLRHPNLVPLRAYFQAKEERLLVYDY 412
R + +L L HPN+V L + + LV+++
Sbjct: 53 IREISLLKELNHPNIVKLLDVIHTENKLYLVFEH 86
>pdb|2V7O|A Chain A, Crystal Structure Of Human Calcium-Calmodulin-Dependent
Protein Kinase Ii Gamma
Length = 336
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Query: 341 ETLGRGTIGSTYKAVLES------GFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLV 394
E LG+G + V ++ I+ K+L + +LE R I L+HPN+V
Sbjct: 37 EELGKGAFSVVRRCVKKTPTQEYAAKIINTKKLSARDHQKLE---REARICRLLKHPNIV 93
Query: 395 PLRAYFQAKEERLLVYDYFPNGSLFSLI 422
L + LV+D G LF I
Sbjct: 94 RLHDSISEEGFHYLVFDLVTGGELFEDI 121
>pdb|3RGF|A Chain A, Crystal Structure Of Human Cdk8CYCC
Length = 405
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 332 LEDLLKASAETLGRGTIGSTYKAVLESGFIVTVKRLKDARYPRLE-EFRRHMDILGRLRH 390
+EDL + +GRGT G YKA + G LK + R + +L L+H
Sbjct: 18 VEDLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGISMSACREIALLRELKH 77
Query: 391 PNLVPLRAYFQAKEER--LLVYDY 412
PN++ L+ F + +R L++DY
Sbjct: 78 PNVISLQKVFLSHADRKVWLLFDY 101
>pdb|3GBZ|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia
pdb|3GC0|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia In
Complex With Amp
Length = 329
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 15/82 (18%)
Query: 343 LGRGTIGSTYKAV-LESGFIVTVKRLKDARYPRLEEFR--------RHMDILGRLRHPNL 393
LG GT G YKA+ + V +KR+ RLE R + +L L+H N+
Sbjct: 42 LGEGTYGEVYKAIDTVTNETVAIKRI------RLEHEEEGVPGTAIREVSLLKELQHRNI 95
Query: 394 VPLRAYFQAKEERLLVYDYFPN 415
+ L++ L+++Y N
Sbjct: 96 IELKSVIHHNHRLHLIFEYAEN 117
>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
pdb|4DBN|B Chain B, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 284
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
Query: 325 DQQMSYSLEDLLKASAETLGRGTIGSTYKAVLESGFIVTVKRLKDARYPRLEEFRRHMDI 384
D + + D + +G G+ G+ YK V + + +L+ F+ + +
Sbjct: 3 DSSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGV 62
Query: 385 LGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIH 423
L + RH N++ Y K + +V + SL+ +H
Sbjct: 63 LRKTRHVNILLFMGY-STKPQLAIVTQWCEGSSLYHHLH 100
>pdb|3A62|A Chain A, Crystal Structure Of Phosphorylated P70s6k1
Length = 327
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 342 TLGRGTIGSTYKAV----LESGFIVTVKRLKDARYPRLEEFRRHM----DILGRLRHPNL 393
LG+G G ++ +G I +K LK A R + H +IL ++HP +
Sbjct: 24 VLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFI 83
Query: 394 VPLRAYFQAKEERLLVYDYFPNGSLF 419
V L FQ + L+ +Y G LF
Sbjct: 84 VDLIYAFQTGGKLYLILEYLSGGELF 109
>pdb|3DXN|A Chain A, Crystal Structure Of The Calcium-dependent Kinase From
Toxoplasma Gondii, 541.m00134, Kinase Domain
Length = 287
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 384 ILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
+L +L HPN++ L +F+ K LV + + G LF I
Sbjct: 74 VLKQLDHPNIMKLYEFFEDKRNYYLVMEVYRGGELFDEI 112
>pdb|3A60|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form I)
pdb|3A60|B Chain B, Crystal Structure Of Unphosphorylated P70s6k1 (Form I)
pdb|3A61|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form Ii)
Length = 327
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 342 TLGRGTIGSTYKAV----LESGFIVTVKRLKDARYPRLEEFRRHM----DILGRLRHPNL 393
LG+G G ++ +G I +K LK A R + H +IL ++HP +
Sbjct: 24 VLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFI 83
Query: 394 VPLRAYFQAKEERLLVYDYFPNGSLF 419
V L FQ + L+ +Y G LF
Sbjct: 84 VDLIYAFQTGGKLYLILEYLSGGELF 109
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 73 LDQLRVLSFKGNSISG-QIPNLLGLVNLKSLYLNDNNFSGKFPGSLSSLHRLKIIVLANN 131
L L VL N ++ + L GL L+ LYL N PG L+ +L+ + LANN
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 132 QISGPIPESLSNLKRLYMLYLQDNKF 157
++ L+ L+ L L LQ+N
Sbjct: 159 DLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1UNG|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNG|B Chain B, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNH|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNH|B Chain B, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNL|A Chain A, Structural Mechanism For The Inhibition Of Cd5-P25 From
The Roscovitine, Aloisine And Indirubin.
pdb|1UNL|B Chain B, Structural Mechanism For The Inhibition Of Cd5-P25 From
The Roscovitine, Aloisine And Indirubin.
pdb|3O0G|A Chain A, Crystal Structure Of Cdk5:p25 In Complex With An Atp
Analogue
pdb|3O0G|B Chain B, Crystal Structure Of Cdk5:p25 In Complex With An Atp
Analogue
Length = 292
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 341 ETLGRGTIGSTYKAV-LESGFIVTVKRLK----DARYPRLEEFRRHMDILGRLRHPNLVP 395
E +G GT G+ +KA E+ IV +KR++ D P R + +L L+H N+V
Sbjct: 8 EKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVP--SSALREICLLKELKHKNIVR 65
Query: 396 LRAYFQAKEERLLVYDY 412
L + ++ LV+++
Sbjct: 66 LHDVLHSDKKLTLVFEF 82
>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
pdb|2VZ6|B Chain B, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
Length = 313
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 341 ETLGRGTIGSTYKAV------LESGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLV 394
E LG+G + V + I+ K+L + +LE R I L+HPN+V
Sbjct: 28 EELGKGAFSVVRRCVKVLAGQEYAAKIINTKKLSARDHQKLE---REARICRLLKHPNIV 84
Query: 395 PLRAYFQAKEERLLVYDYFPNGSLFSLI 422
L + L++D G LF I
Sbjct: 85 RLHDSISEEGHHYLIFDLVTGGELFEDI 112
>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2
pdb|3NYV|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Non-Specific Inhibitor
Whi-P180
Length = 484
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 376 EEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
E R + +L +L HPN+ L +F+ K LV + + G LF I
Sbjct: 71 ESLLREVQLLKQLDHPNIXKLYEFFEDKGYFYLVGEVYTGGELFDEI 117
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 73 LDQLRVLSFKGNSISG-QIPNLLGLVNLKSLYLNDNNFSGKFPGSLSSLHRLKIIVLANN 131
L L VL N ++ + L GL L+ LYL N PG L+ +L+ + LANN
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 132 QISGPIPESLSNLKRLYMLYLQDNKF 157
++ L+ L+ L L LQ+N
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1H4L|A Chain A, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex
pdb|1H4L|B Chain B, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex
Length = 292
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 341 ETLGRGTIGSTYKAV-LESGFIVTVKRLK----DARYPRLEEFRRHMDILGRLRHPNLVP 395
E +G GT G+ +KA E+ IV +KR++ D P R + +L L+H N+V
Sbjct: 8 EKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVP--SSALREICLLKELKHKNIVR 65
Query: 396 LRAYFQAKEERLLVYDY 412
L + ++ LV+++
Sbjct: 66 LHDVLHSDKKLTLVFEF 82
>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound
To Appcp From D. Discoideum
Length = 287
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 343 LGRGTIGSTYKA-VLESGFIVTVKRL-------KDARYPRLEEFRRHMDILGRLRHPNLV 394
+G+G G +K +++ +V +K L + + +EF+R + I+ L HPN+V
Sbjct: 27 IGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIV 86
Query: 395 PLRAYFQAKEERLLVYDYFPNGSLF 419
L +V ++ P G L+
Sbjct: 87 KLYGLMHNPPR--MVMEFVPCGDLY 109
>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To
Appcp From D. Discoideum
pdb|4F0G|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum
pdb|4F1T|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum Bound To The Rock Inhibitor H1152
Length = 287
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 343 LGRGTIGSTYKA-VLESGFIVTVKRL-------KDARYPRLEEFRRHMDILGRLRHPNLV 394
+G+G G +K +++ +V +K L + + +EF+R + I+ L HPN+V
Sbjct: 27 IGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIV 86
Query: 395 PLRAYFQAKEERLLVYDYFPNGSLF 419
L +V ++ P G L+
Sbjct: 87 KLYGLMHNPPR--MVMEFVPCGDLY 109
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 74 DQLRVLSFKGNSISG-QIPNLLGLVNLKSLYLNDNNFSGKFPGSLSSLHRLKIIVLANNQ 132
+ L L N I ++ +LL L L L N GSLS L L+ + L NN+
Sbjct: 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252
Query: 133 ISGPIPESLSNLKRLYMLYLQDNKFT 158
+S +P L +LK L ++YL N T
Sbjct: 253 LSR-VPAGLPDLKLLQVVYLHTNNIT 277
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 102 LYLNDNNFSGKFPGSLSSLHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDNKFTGPI 161
L L +N+ S L L +VL NN+IS ++ S L++L LY+ N I
Sbjct: 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EI 117
Query: 162 PPFNQTNLRFFNVSNN 177
PP ++L + +N
Sbjct: 118 PPNLPSSLVELRIHDN 133
>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 300
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 331 SLEDLLKASAETLGRGTIGSTYKAVLE-SGFIVTVKRLK-DARYPRLEEFR-RHMDILGR 387
S+E+ K E +G GT G YKA + +G +V +K+++ D + R + +L
Sbjct: 3 SMENFQKV--EKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE 60
Query: 388 LRHPNLVPLRAYFQAKEERLLVYDYF 413
L HPN+V L + + LV+++
Sbjct: 61 LNHPNIVKLLDVIHTENKLYLVFEFL 86
>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
Length = 301
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 331 SLEDLLKASAETLGRGTIGSTYKAVLE-SGFIVTVKRLK-DARYPRLEEFR-RHMDILGR 387
S+E+ K E +G GT G YKA + +G +V +K+++ D + R + +L
Sbjct: 4 SMENFQKV--EKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE 61
Query: 388 LRHPNLVPLRAYFQAKEERLLVYDYF 413
L HPN+V L + + LV+++
Sbjct: 62 LNHPNIVKLLDVIHTENKLYLVFEFL 87
>pdb|3A4O|X Chain X, Lyn Kinase Domain
Length = 286
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 343 LGRGTIGSTYKAVLESGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPLRAYFQA 402
LG G G + + V VK LK ++ F +++ L+H LV L A
Sbjct: 21 LGAGQFGEVWMGYYNNSTKVAVKTLKPGTM-SVQAFLEEANLMKTLQHDKLVRLYAVVTR 79
Query: 403 KEERLLVYDYFPNGSLFSLI 422
+E ++ +Y GSL +
Sbjct: 80 EEPIYIITEYMAKGSLLDFL 99
>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain
From D. Discoideum Bound To Appcp
Length = 287
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 343 LGRGTIGSTYKA-VLESGFIVTVKRL-------KDARYPRLEEFRRHMDILGRLRHPNLV 394
+G+G G +K +++ +V +K L + + +EF+R + I+ L HPN+V
Sbjct: 27 IGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIV 86
Query: 395 PLRAYFQAKEERLLVYDYFPNGSLF 419
L +V ++ P G L+
Sbjct: 87 KLYGLMHNPPR--MVMEFVPCGDLY 109
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 73 LDQLRVLSFKGNSISG-QIPNLLGLVNLKSLYLNDNNFSGKFPGSLSSLHRLKIIVLANN 131
L L VL N ++ + L GL L+ LYL N PG L+ +L+ + LANN
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 132 QISGPIPESLSNLKRLYMLYLQDNKF 157
++ L+ L+ L L LQ+N
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|B Chain B, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|C Chain C, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|D Chain D, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
Length = 286
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 341 ETLGRGTIGSTYKAVLE----SGFIVTVKRLKDARYPRLE-EFRRHMDILGRLRHPNLVP 395
+ +G G G L+ V +K LK + +F I+G+ HPN++
Sbjct: 13 QVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIH 72
Query: 396 LRAYFQAKEERLLVYDYFPNGSLFSLI 422
L +++ ++ NGSL S +
Sbjct: 73 LEGVVTKSTPVMIITEFMENGSLDSFL 99
>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
Length = 301
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 331 SLEDLLKASAETLGRGTIGSTYKAVLE-SGFIVTVKRLK-DARYPRLEEFR-RHMDILGR 387
S+E+ K E +G GT G YKA + +G +V +K+++ D + R + +L
Sbjct: 4 SMENFQKV--EKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE 61
Query: 388 LRHPNLVPLRAYFQAKEERLLVYDYF 413
L HPN+V L + + LV+++
Sbjct: 62 LNHPNIVKLLDVIHTENKLYLVFEFL 87
>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCQ|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 301
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 331 SLEDLLKASAETLGRGTIGSTYKAVLE-SGFIVTVKRLK-DARYPRLEEFR-RHMDILGR 387
S+E+ K E +G GT G YKA + +G +V +K+++ D + R + +L
Sbjct: 3 SMENFQKV--EKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE 60
Query: 388 LRHPNLVPLRAYFQAKEERLLVYDYF 413
L HPN+V L + + LV+++
Sbjct: 61 LNHPNIVKLLDVIHTENKLYLVFEFL 86
>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site
pdb|3EZV|A Chain A, Cdk-2 With Indazole Inhibitor 9 Bound At Its Active Site
Length = 300
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 331 SLEDLLKASAETLGRGTIGSTYKAVLE-SGFIVTVKRLK-DARYPRLEEFR-RHMDILGR 387
S+E+ K E +G GT G YKA + +G +V +K+++ D + R + +L
Sbjct: 2 SMENFQKV--EKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE 59
Query: 388 LRHPNLVPLRAYFQAKEERLLVYDYF 413
L HPN+V L + + LV+++
Sbjct: 60 LNHPNIVKLLDVIHTENKLYLVFEFL 85
>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 289
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 331 SLEDLLKASAETLGRGTIGSTYKAVLE-SGFIVTVKRLK-DARYPRLEEFR-RHMDILGR 387
S+E+ K E +G GT G YKA + +G +V +K+++ D + R + +L
Sbjct: 1 SMENFQKV--EKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE 58
Query: 388 LRHPNLVPLRAYFQAKEERLLVYDYF 413
L HPN+V L + + LV+++
Sbjct: 59 LNHPNIVKLLDVIHTENKLYLVFEFL 84
>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H24|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|A Chain A, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|C Chain C, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2WMA|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 303
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 331 SLEDLLKASAETLGRGTIGSTYKAVLE-SGFIVTVKRLK-DARYPRLEEFR-RHMDILGR 387
S+E+ K E +G GT G YKA + +G +V +K+++ D + R + +L
Sbjct: 5 SMENFQKV--EKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE 62
Query: 388 LRHPNLVPLRAYFQAKEERLLVYDYF 413
L HPN+V L + + LV+++
Sbjct: 63 LNHPNIVKLLDVIHTENKLYLVFEFL 88
>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|A Chain A, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|C Chain C, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|A Chain A, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|C Chain C, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|4BCO|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 300
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 331 SLEDLLKASAETLGRGTIGSTYKAVLE-SGFIVTVKRLK-DARYPRLEEFR-RHMDILGR 387
S+E+ K E +G GT G YKA + +G +V +K+++ D + R + +L
Sbjct: 2 SMENFQKV--EKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE 59
Query: 388 LRHPNLVPLRAYFQAKEERLLVYDYF 413
L HPN+V L + + LV+++
Sbjct: 60 LNHPNIVKLLDVIHTENKLYLVFEFL 85
>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 331 SLEDLLKASAETLGRGTIGSTYKAVLE-SGFIVTVKRLK-DARYPRLEEFR-RHMDILGR 387
S+E+ K E +G GT G YKA + +G +V +K+++ D + R + +L
Sbjct: 3 SMENFQKV--EKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE 60
Query: 388 LRHPNLVPLRAYFQAKEERLLVYDYF 413
L HPN+V L + + LV+++
Sbjct: 61 LNHPNIVKLLDVIHTENKLYLVFEFL 86
>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|C Chain C, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1PKD|A Chain A, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|C Chain C, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
Length = 297
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 331 SLEDLLKASAETLGRGTIGSTYKAVLE-SGFIVTVKRLK-DARYPRLEEFR-RHMDILGR 387
S+E+ K E +G GT G YKA + +G +V +K+++ D + R + +L
Sbjct: 1 SMENFQKV--EKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE 58
Query: 388 LRHPNLVPLRAYFQAKEERLLVYDYF 413
L HPN+V L + + LV+++
Sbjct: 59 LNHPNIVKLLDVIHTENKLYLVFEFL 84
>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed
With Compound 16
Length = 271
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 341 ETLGRGTIGSTYKAVLESGFIVTVKRLKDARYP-------RLEEFRRHMDILGRLRHPNL 393
E +G G G Y+A +I +K AR+ +E R+ + L+HPN+
Sbjct: 13 EIIGIGGFGKVYRAF----WIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNI 68
Query: 394 VPLRAYFQAKEERLLVYDYFPNGSLFSLIHG 424
+ LR + LV ++ G L ++ G
Sbjct: 69 IALRGVCLKEPNLCLVMEFARGGPLNRVLSG 99
>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
Length = 302
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 331 SLEDLLKASAETLGRGTIGSTYKAVLE-SGFIVTVKRLK-DARYPRLEEFR-RHMDILGR 387
S+E+ K E +G GT G YKA + +G +V +K+++ D + R + +L
Sbjct: 4 SMENFQKV--EKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE 61
Query: 388 LRHPNLVPLRAYFQAKEERLLVYDYF 413
L HPN+V L + + LV+++
Sbjct: 62 LNHPNIVKLLDVIHTENKLYLVFEFL 87
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 73 LDQLRVLSFKGNSISG-QIPNLLGLVNLKSLYLNDNNFSGKFPGSLSSLHRLKIIVLANN 131
L L VL N ++ + L GL L+ LYL N PG L+ +L+ + LANN
Sbjct: 100 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 159
Query: 132 QISGPIPESLSN-LKRLYMLYLQDNKF 157
++ +P L N L+ L L LQ+N
Sbjct: 160 NLTE-LPAGLLNGLENLDTLLLQENSL 185
>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 300
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 331 SLEDLLKASAETLGRGTIGSTYKAVLE-SGFIVTVKRLK-DARYPRLEEFR-RHMDILGR 387
S+E+ K E +G GT G YKA + +G +V +K+++ D + R + +L
Sbjct: 3 SMENFQKV--EKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE 60
Query: 388 LRHPNLVPLRAYFQAKEERLLVYDYF 413
L HPN+V L + + LV+++
Sbjct: 61 LNHPNIVKLLDVIHTENKLYLVFEFL 86
>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 331 SLEDLLKASAETLGRGTIGSTYKAVLE-SGFIVTVKRLK-DARYPRLEEFR-RHMDILGR 387
S+E+ K E +G GT G YKA + +G +V +K+++ D + R + +L
Sbjct: 2 SMENFQKV--EKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE 59
Query: 388 LRHPNLVPLRAYFQAKEERLLVYDYF 413
L HPN+V L + + LV+++
Sbjct: 60 LNHPNIVKLLDVIHTENKLYLVFEFL 85
>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E
pdb|4EOR|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
Length = 298
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 331 SLEDLLKASAETLGRGTIGSTYKAVLE-SGFIVTVKRLK-DARYPRLEEFR-RHMDILGR 387
S+E+ K E +G GT G YKA + +G +V +K+++ D + R + +L
Sbjct: 1 SMENFQKV--EKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE 58
Query: 388 LRHPNLVPLRAYFQAKEERLLVYDYF 413
L HPN+V L + + LV+++
Sbjct: 59 LNHPNIVKLLDVIHTENKLYLVFEFL 84
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 73 LDQLRVLSFKGNSISG-QIPNLLGLVNLKSLYLNDNNFSGKFPGSLSSLHRLKIIVLANN 131
L L VL N ++ + L GL L+ LYL N PG L+ +L+ + LANN
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 132 QISGPIPESLSNLKRLYMLYLQDNKF 157
++ L+ L+ L L LQ+N
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
Length = 299
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 331 SLEDLLKASAETLGRGTIGSTYKAVLE-SGFIVTVKRLK-DARYPRLEEFR-RHMDILGR 387
S+E+ K E +G GT G YKA + +G +V +K+++ D + R + +L
Sbjct: 2 SMENFQKV--EKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE 59
Query: 388 LRHPNLVPLRAYFQAKEERLLVYDYF 413
L HPN+V L + + LV+++
Sbjct: 60 LNHPNIVKLLDVIHTENKLYLVFEFL 85
>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
pdb|3Q96|B Chain B, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
Length = 282
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 340 AETLGRGTIGSTYKAVLESGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPLRAY 399
+ +G G+ G+ YK V + + +L+ F+ + +L + RH N++ Y
Sbjct: 15 GQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 74
Query: 400 FQAKEERLLVYDYFPNGSLFSLIH 423
K + +V + SL+ +H
Sbjct: 75 -STKPQLAIVTQWCEGSSLYHHLH 97
>pdb|3ZGW|A Chain A, Crystal Structure Of Maternal Embryonic Leucine Zipper
Kinase (melk) In Complex With Amp-pnp
Length = 347
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 341 ETLGRGTIGSTYKAV-LESGFIVTVKRL-KDARYPRLEEFRRHMDILGRLRHPNLVPLRA 398
ET+G G A + +G +V +K + K+ L + ++ L LRH ++ L
Sbjct: 16 ETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGSDLPRIKTEIEALKNLRHQHICQLYH 75
Query: 399 YFQAKEERLLVYDYFPNGSLFSLI 422
+ + +V +Y P G LF I
Sbjct: 76 VLETANKIFMVLEYCPGGELFDYI 99
>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|C Chain C, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1GY3|A Chain A, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|C Chain C, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1P5E|A Chain A, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|C Chain C, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|2CCH|A Chain A, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|C Chain C, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCI|A Chain A, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|C Chain C, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2G9X|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|3DDP|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDQ|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DOG|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 299
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 331 SLEDLLKASAETLGRGTIGSTYKAVLE-SGFIVTVKRLK-DARYPRLEEFR-RHMDILGR 387
S+E+ K E +G GT G YKA + +G +V +K+++ D + R + +L
Sbjct: 1 SMENFQKV--EKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE 58
Query: 388 LRHPNLVPLRAYFQAKEERLLVYDYF 413
L HPN+V L + + LV+++
Sbjct: 59 LNHPNIVKLLDVIHTENKLYLVFEFL 84
>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006
pdb|1UWJ|B Chain B, The Complex Of Mutant V599e B-raf And Bay439006
Length = 276
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 340 AETLGRGTIGSTYKAVLESGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPLRAY 399
+ +G G+ G+ YK V + + +L+ F+ + +L + RH N++ Y
Sbjct: 13 GQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 72
Query: 400 FQAKEERLLVYDYFPNGSLFSLIH 423
K + +V + SL+ +H
Sbjct: 73 -STKPQLAIVTQWCEGSSLYHHLH 95
>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Pp1
Length = 314
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 340 AETLGRGTIGSTYKAVL-----ESGFI-VTVKRLKDARYP-RLEEFRRHMDILGRLRHPN 392
+TLG G G KA +G+ V VK LK+ P L + ++L ++ HP+
Sbjct: 28 GKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPH 87
Query: 393 LVPLRAYFQAKEERLLVYDYFPNGSL 418
++ L LL+ +Y GSL
Sbjct: 88 VIKLYGACSQDGPLLLIVEYAKYGSL 113
>pdb|4H58|A Chain A, Braf In Complex With Compound 3
pdb|4H58|B Chain B, Braf In Complex With Compound 3
pdb|4H58|C Chain C, Braf In Complex With Compound 3
Length = 275
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 340 AETLGRGTIGSTYKAVLESGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPLRAY 399
+ +G G+ G+ YK V + + +L+ F+ + +L + RH N++ Y
Sbjct: 13 GQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 72
Query: 400 FQAKEERLLVYDYFPNGSLFSLIH 423
K + +V + SL+ +H
Sbjct: 73 -STKPQLAIVTQWCEGSSLYHHLH 95
>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
pdb|1JPA|B Chain B, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
Length = 312
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 341 ETLGRGTIGSTYKAVLE----SGFIVTVKRLKDARYPRLE-EFRRHMDILGRLRHPNLVP 395
+ +G G G L+ V +K LK + +F I+G+ HPN++
Sbjct: 39 QVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIH 98
Query: 396 LRAYFQAKEERLLVYDYFPNGSLFSLI 422
L +++ ++ NGSL S +
Sbjct: 99 LEGVVTKSTPVMIITEFMENGSLDSFL 125
>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|C Chain C, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 299
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 331 SLEDLLKASAETLGRGTIGSTYKAVLE-SGFIVTVKRLK-DARYPRLEEFR-RHMDILGR 387
S+E+ K E +G GT G YKA + +G +V +K+++ D + R + +L
Sbjct: 1 SMENFQKV--EKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE 58
Query: 388 LRHPNLVPLRAYFQAKEERLLVYDYF 413
L HPN+V L + + LV+++
Sbjct: 59 LNHPNIVKLLDVIHTENKLYLVFEFL 84
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 73 LDQLRVLSFKGNSISG-QIPNLLGLVNLKSLYLNDNNFSGKFPGSLSSLHRLKIIVLANN 131
L L VL N ++ + L GL L+ LYL N PG L+ +L+ + LANN
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 132 QISGPIPESLSNLKRLYMLYLQDNKF 157
++ L+ L+ L L LQ+N
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain
pdb|2IVU|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Zd6474
pdb|2X2K|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2L|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|B Chain B, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
Length = 314
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 340 AETLGRGTIGSTYKAVL-----ESGFI-VTVKRLKDARYP-RLEEFRRHMDILGRLRHPN 392
+TLG G G KA +G+ V VK LK+ P L + ++L ++ HP+
Sbjct: 28 GKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPH 87
Query: 393 LVPLRAYFQAKEERLLVYDYFPNGSL 418
++ L LL+ +Y GSL
Sbjct: 88 VIKLYGACSQDGPLLLIVEYAKYGSL 113
>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
Complex With Ca2+ And Amppnp
Length = 494
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 384 ILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFS-LIH 423
+L L HPN++ L +F+ K LV + + G LF +IH
Sbjct: 89 VLKLLDHPNIMKLYDFFEDKRNYYLVMECYKGGELFDEIIH 129
>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5)
Length = 295
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 377 EFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
+F I+G+ HPN++ L + ++V +Y NGSL + +
Sbjct: 69 DFLGEASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYMENGSLDTFL 114
>pdb|4EUU|A Chain A, Structure Of Bx-795 Complexed With Human Tbk1 Kinase
Domain Phosphorylated On Ser172
pdb|4EUU|B Chain B, Structure Of Bx-795 Complexed With Human Tbk1 Kinase
Domain Phosphorylated On Ser172
Length = 319
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 329 SYSLEDLLKASAETLGRGTIGSTYKAVLE-SGFIVTVKRLKDARYPRLEEFR-RHMDILG 386
S S + L ++ LG+G + ++ + +G + +K + + R + + R ++L
Sbjct: 3 SQSTSNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLK 62
Query: 387 RLRHPNLVPLRAYFQAKEER--LLVYDYFPNGSLFSLI 422
+L H N+V L A + R +L+ ++ P GSL++++
Sbjct: 63 KLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVL 100
>pdb|2WTK|B Chain B, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
pdb|2WTK|E Chain E, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
Length = 373
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 358 SGFIVTVKRLK-DARYPRLEEFRR-HMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPN 415
+G VTV+R+ +A + F + + + HPN+VP RA F A E +V +
Sbjct: 35 TGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMAY 94
Query: 416 GSLFSLI 422
GS LI
Sbjct: 95 GSAKDLI 101
>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
pdb|2IVS|B Chain B, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
Length = 314
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 340 AETLGRGTIGSTYKAVL-----ESGFI-VTVKRLKDARYP-RLEEFRRHMDILGRLRHPN 392
+TLG G G KA +G+ V VK LK+ P L + ++L ++ HP+
Sbjct: 28 GKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPH 87
Query: 393 LVPLRAYFQAKEERLLVYDYFPNGSL 418
++ L LL+ +Y GSL
Sbjct: 88 VIKLYGACSQDGPLLLIVEYAKYGSL 113
>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 362 VTVKRLKDARYPRLE-EFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFS 420
V +K LK R +F I+G+ HPN++ L ++V +Y NGSL +
Sbjct: 80 VAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDT 139
Query: 421 LI 422
+
Sbjct: 140 FL 141
>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Vuf 12058
Length = 285
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 362 VTVKRLKDARYP--RLEEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLF 419
V +K LK A Y + +F I+G+ HPN++ L + +++ +Y NGSL
Sbjct: 39 VAIKTLK-AGYTDKQRRDFLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLD 97
Query: 420 SLI 422
+ +
Sbjct: 98 AFL 100
>pdb|3GNI|B Chain B, Structure Of Strad And Mo25
Length = 389
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 358 SGFIVTVKRLK-DARYPRLEEFRR-HMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPN 415
+G VTV+R+ +A + F + + + HPN+VP RA F A E +V +
Sbjct: 51 TGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMAY 110
Query: 416 GSLFSLI 422
GS LI
Sbjct: 111 GSAKDLI 117
>pdb|3E3P|A Chain A, Glycogen Synthase Kinase From Leishmania Major
pdb|3E3P|B Chain B, Glycogen Synthase Kinase From Leishmania Major
Length = 360
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 344 GRGTIGSTYKAVLES-GFIVTVKR-LKDARYPRLEEFRRHMDILGRLRHPNLVPLRAYFQ 401
G+GT G+ +S G V +K+ ++D R+ R E + D L L HPN+V L++YF
Sbjct: 32 GQGTFGTVQLGKEKSTGMSVAIKKVIQDPRF-RNRELQIMQD-LAVLHHPNIVQLQSYFY 89
Query: 402 AKEER 406
ER
Sbjct: 90 TLGER 94
>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXQ|A Chain A, Cdk2 In Complex With 3 Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXR|A Chain A, Apo Cdk2 Crystallized From Jeffamine
pdb|3PXY|A Chain A, Cdk2 In Complex With Inhibitor Jws648
pdb|3PXZ|A Chain A, Cdk2 Ternary Complex With Jws648 And Ans
pdb|3PY0|A Chain A, Cdk2 In Complex With Inhibitor Su9516
pdb|3PY1|A Chain A, Cdk2 Ternary Complex With Su9516 And Ans
pdb|3QL8|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-260
pdb|3QQF|A Chain A, Cdk2 In Complex With Inhibitor L1
pdb|3QQG|A Chain A, Cdk2 In Complex With Inhibitor L2-5
pdb|3QQH|A Chain A, Cdk2 In Complex With Inhibitor L2-2
pdb|3QQJ|A Chain A, Cdk2 In Complex With Inhibitor L2
pdb|3QQL|A Chain A, Cdk2 In Complex With Inhibitor L3
pdb|3QRT|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc2-55
pdb|3QRU|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-12
pdb|3QWJ|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-142
pdb|3QWK|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-150
pdb|3QX2|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-190
pdb|3QX4|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-78
pdb|3QXO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-84
pdb|3QZF|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-52
pdb|3QZG|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-76
pdb|3QZH|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-124
pdb|3QZI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-126
pdb|3R1Q|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-102
pdb|3R1S|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-127
pdb|3R1Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-134
pdb|3R28|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-140
pdb|3R6X|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-158
pdb|3R71|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-162
pdb|3R73|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-164
pdb|3R7E|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-67
pdb|3R7I|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-74
pdb|3R7U|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-75
pdb|3R7V|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-9
pdb|3R7Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-88
pdb|3R83|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-92
pdb|3R8L|A Chain A, Cdk2 In Complex With Inhibitor L3-4
pdb|3R8M|A Chain A, Cdk2 In Complex With Inhibitor L3-3
pdb|3R8P|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-6
pdb|3RAI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-160
pdb|3RM6|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-80
pdb|3RM7|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-91
pdb|3ROY|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-154
pdb|3RPO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-156
pdb|4EZ3|A Chain A, Cdk2 In Complex With Nsc 134199
pdb|4EZ7|A Chain A, Cdk2 In Complex With Staurosporine And 2 Molecules Of
8-Anilino-1- Naphthalene Sulfonic Acid
pdb|3QQK|A Chain A, Cdk2 In Complex With Inhibitor L4
pdb|3QTQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-137
pdb|3QTR|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-148
pdb|3QTS|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-12
pdb|3QTU|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-132
pdb|3QTW|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-13
pdb|3QTX|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-35
pdb|3QTZ|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-36
pdb|3QU0|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-38
pdb|3QXP|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
pdb|3R8U|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-132
pdb|3R8V|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-135
pdb|3R8Z|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-136
pdb|3R9D|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-135
pdb|3R9H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-142
pdb|3R9N|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-21
pdb|3R9O|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-143
pdb|3RAH|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-22
pdb|3RAK|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-32
pdb|3RAL|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-34
pdb|3RJC|A Chain A, Cdk2 In Complex With Inhibitor L4-12
pdb|3RK5|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-72
pdb|3RK7|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-71
pdb|3RK9|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-74
pdb|3RKB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-73
pdb|3RMF|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-33
pdb|3RNI|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-86
pdb|3RPR|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-49
pdb|3RPV|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-88
pdb|3RPY|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-40
pdb|3RZB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-23
pdb|3S00|A Chain A, Cdk2 In Complex With Inhibitor L4-14
pdb|3S0O|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-138
pdb|3S1H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-39
pdb|3SQQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-96
pdb|4GCJ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
Length = 306
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 340 AETLGRGTIGSTYKAVLE-SGFIVTVKRLK-DARYPRLEEFR-RHMDILGRLRHPNLVPL 396
E +G GT G YKA + +G +V +K+++ D + R + +L L HPN+V L
Sbjct: 15 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 74
Query: 397 RAYFQAKEERLLVYDYF 413
+ + LV+++
Sbjct: 75 LDVIHTENKLYLVFEFL 91
>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 362 VTVKRLKDARYPRLE-EFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFS 420
V +K LK R +F I+G+ HPN++ L ++V +Y NGSL +
Sbjct: 80 VAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDT 139
Query: 421 LI 422
+
Sbjct: 140 FL 141
>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A
Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine
Length = 299
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 340 AETLGRGTIGSTYKAVLE-SGFIVTVKRLK-DARYPRLEEFR-RHMDILGRLRHPNLVPL 396
E +G GT G YKA + +G +V +K+++ D + R + +L L HPN+V L
Sbjct: 8 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 67
Query: 397 RAYFQAKEERLLVYDYF 413
+ + LV+++
Sbjct: 68 LDVIHTENKLYLVFEFL 84
>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-dependent Kinase Inhibitors Identified Through
Structure-based Hybridisation
Length = 299
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 340 AETLGRGTIGSTYKAVLE-SGFIVTVKRLK-DARYPRLEEFR-RHMDILGRLRHPNLVPL 396
E +G GT G YKA + +G +V +K+++ D + R + +L L HPN+V L
Sbjct: 8 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 67
Query: 397 RAYFQAKEERLLVYDYF 413
+ + LV+++
Sbjct: 68 LDVIHTENKLYLVFEFL 84
>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|C Chain C, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 296
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 340 AETLGRGTIGSTYKAVLE-SGFIVTVKRLK-DARYPRLEEFR-RHMDILGRLRHPNLVPL 396
E +G GT G YKA + +G +V +K+++ D + R + +L L HPN+V L
Sbjct: 7 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 66
Query: 397 RAYFQAKEERLLVYDYF 413
+ + LV+++
Sbjct: 67 LDVIHTENKLYLVFEFL 83
>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
pdb|2BVA|B Chain B, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 292
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 8/108 (7%)
Query: 319 VFCGPGDQQMSYSLEDLLKASAETLGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRLEE 377
+ PGD + SY L++ +K +G G+ G A V SG +V VK++ + R E
Sbjct: 11 LVVDPGDPR-SY-LDNFIK-----IGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRREL 63
Query: 378 FRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGT 425
+ I+ +H N+V + + +E +V ++ G+L ++ T
Sbjct: 64 LFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHT 111
>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide,
Compound (S)-8b
pdb|3IG7|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efp With Cdk-2
pdb|3IGG|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efq With Cdk-2
pdb|1B38|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1B39|A Chain A, Human Cyclin-Dependent Kinase 2 Phosphorylated On Thr 160
pdb|1E1V|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu2058
pdb|1E1X|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu6027
pdb|1H00|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H07|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H08|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|2R3R|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|4ACM|A Chain A, Cdk2 In Complex With
3-Amino-6-(4-{[2-(Dimethylamino)ethyl]
Sulfamoyl}-Phenyl)-N-Pyridin-3-Ylpyrazine-2-Carboxamide
pdb|3SW4|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|3SW7|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|1OIQ|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
pdb|1V1K|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1URW|A Chain A, Cdk2 In Complex With An Imidazo[1,2-B]pyridazine
pdb|2VV9|A Chain A, Cdk2 In Complex With An Imidazole Piperazine
pdb|2W06|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5c
pdb|2R3G|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3H|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3F|A Chain A, Crystal Structure Of Cyclin-dependent Kinase 2 With
Inhibitor
Length = 299
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 340 AETLGRGTIGSTYKAVLE-SGFIVTVKRLK-DARYPRLEEFR-RHMDILGRLRHPNLVPL 396
E +G GT G YKA + +G +V +K+++ D + R + +L L HPN+V L
Sbjct: 8 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 67
Query: 397 RAYFQAKEERLLVYDYF 413
+ + LV+++
Sbjct: 68 LDVIHTENKLYLVFEFL 84
>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|C Chain C, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1CKP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Purvalanol B
pdb|1BUH|A Chain A, Crystal Structure Of The Human Cdk2 Kinase Complex With
Cell Cycle-Regulatory Protein Ckshs1
pdb|1DM2|A Chain A, Human Cyclin-Dependent Kinase 2 Complexed With The
Inhibitor Hymenialdisine
pdb|1DI8|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With
4-[3-Hydroxyanilino]-6,7-Dimethoxyquinazoline
pdb|1F5Q|A Chain A, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1F5Q|C Chain C, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1FVT|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With An Oxindole Inhibitor
pdb|1FVV|A Chain A, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|C Chain C, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1JSV|A Chain A, The Structure Of Cyclin-dependent Kinase 2 (cdk2) In
Complex With 4-[(6-amino-4-pyrimidinyl)
Amino]benzenesulfonamide
pdb|1G5S|A Chain A, Crystal Structure Of Human Cyclin Dependent Kinase 2
(Cdk2) In Complex With The Inhibitor H717
pdb|1JVP|P Chain P, Crystal Structure Of Human Cdk2 (Unphosphorylated) In
Complex With Pkf049-365
pdb|1GIH|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1KE5|A Chain A, Cdk2 Complexed With N-methyl-4-{[(2-oxo-1,2-dihydro-3h-
Indol-3-ylidene)methyl]amino}benzenesulfonamide
pdb|1KE6|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
N-Methyl-{4-
[2-(7-Oxo-6,7-Dihydro-8h-[1,3]thiazolo[5,4-E]indol-8-
Ylidene)hydrazino]phenyl}methanesulfonamide
pdb|1KE7|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[(2,2-
Dioxido-1,
3-Dihydro-2-Benzothien-5-Yl)amino]methylene}-5-
(1,3-Oxazol-5-Yl)-1,3-Dihydro-2h-Indol-2-One
pdb|1KE8|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
4-{[(2-Oxo-
1,2-Dihydro-3h-Indol-3-Ylidene)methyl]amino}-N-(1,3-
Thiazol-2-Yl)benzenesulfonamide
pdb|1KE9|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[4-
({[amino(Imino)methyl]aminosulfonyl)anilino]methylene}-
2- Oxo-2,3-Dihydro-1h-Indole
pdb|1H0V|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor
2-Amino-6-[(R)-Pyrrolidino-5'-Yl]methoxypurine
pdb|1H0W|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 2-Amino-6-[cyclohex-3-Enyl]methoxypurine
pdb|1P2A|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Trisubstituted Naphthostyril Inhibitor
pdb|1OKV|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|A Chain A, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|C Chain C, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|A Chain A, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|C Chain C, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1PW2|A Chain A, Apo Structure Of Human Cyclin-Dependent Kinase 2
pdb|1PXI|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-(2,5-dichloro-thiophen-3-yl)-pyrimidin-2-
Ylamine
pdb|1PXJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Ylamine
pdb|1PXK|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-dimethyl-thiazol-5-yl)pyrimidin-2-yl]-
N'-hydroxyiminoformamide
pdb|1PXL|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2,4-dimethyl-thiazol-5-yl)-pyrimidin-2-yl]-
(4-trifluoromethyl-phenyl)-amine
pdb|1R78|A Chain A, Cdk2 Complex With A 4-alkynyl Oxindole Inhibitor
pdb|1PXM|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 3-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-
Ylamino]-Phenol
pdb|1PXN|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-[4-(4-Methyl-2-Methylamino-Thiazol-5-Yl)-
Pyrimidin-2-Ylamino]-Phenol
pdb|1PXO|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2-Amino-4-Methyl-Thiazol-5-Yl)-Pyrimidin-2-
Yl]-(3-Nitro-Phenyl)-Amine
pdb|1PXP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Yl]-
N',N'-Dimethyl-Benzene-1,4-Diamine
pdb|1VYZ|A Chain A, Structure Of Cdk2 Complexed With Pnu-181227
pdb|1PYE|A Chain A, Crystal Structure Of Cdk2 With Inhibitor
pdb|1URC|A Chain A, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|C Chain C, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1W0X|C Chain C, Crystals Structure Of Human Cdk2 In Complex With The
Inhibitor Olomoucine.
pdb|1WCC|A Chain A, Screening For Fragment Binding By X-Ray Crystallography
pdb|1Y8Y|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|1Y91|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|2BHE|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 5-Bromo-Indirubine
pdb|2BHH|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 4-Hydroxypiperindinesulfonyl-Indirubine
pdb|2B52|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Dph-
042562
pdb|2B53|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Din-
234325
pdb|2B54|A Chain A, Human Cyclin Dependent Kinase 2 (Ckd2)complexed With Din-
232305
pdb|2B55|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With
Indenopyraxole Din-101312
pdb|2BTR|A Chain A, Structure Of Cdk2 Complexed With Pnu-198873
pdb|2BTS|A Chain A, Structure Of Cdk2 Complexed With Pnu-230032
pdb|2C68|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C69|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6I|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6K|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6L|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6M|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6O|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2EXM|A Chain A, Human Cdk2 In Complex With Isopentenyladenine
pdb|1YKR|A Chain A, Crystal Structure Of Cdk2 With An Aminoimidazo Pyridine
Inhibitor
pdb|2A0C|X Chain X, Human Cdk2 In Complex With Olomoucine Ii, A Novel 2,6,9-
Trisubstituted Purine Cyclin-Dependent Kinase Inhibitor
pdb|2C5N|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5Y|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2A4L|A Chain A, Human Cyclin-Dependent Kinase 2 In Complex With
Roscovitine
pdb|2FVD|A Chain A, Cyclin Dependent Kinase 2 (Cdk2) With Diaminopyrimidine
Inhibitor
pdb|2I40|A Chain A, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|C Chain C, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2CLX|A Chain A, 4-Arylazo-3,5-Diamino-1h-Pyrazole Cdk Inhibitors: Sar
Study, Crystal Structure In Complex With Cdk2,
Selectivity, And Cellular Effects
pdb|2DUV|A Chain A, Structure Of Cdk2 With A 3-Hydroxychromones
pdb|2UUE|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UZN|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZO|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2V0D|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|1AQ1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Staurosporine
pdb|1HCK|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1HCL|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|2J9M|A Chain A, Crystal Structure Of Cdk2 In Complex With Macrocyclic
Aminopyrimidine
pdb|2V22|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2VTA|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTH|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design
pdb|2VTI|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTJ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTL|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTM|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTN|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTO|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTP|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTQ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTR|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTS|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTT|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VU3|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2R64|A Chain A, Crystal Structure Of A 3-Aminoindazole Compound With Cdk2
pdb|2W05|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5b
pdb|3EID|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|A Chain A, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|C Chain C, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2W1H|A Chain A, Fragment-Based Discovery Of The Pyrazol-4-Yl Urea
(At9283), A Multi-Targeted Kinase Inhibitor With Potent
Aurora Kinase Activity
pdb|3F5X|A Chain A, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|C Chain C, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3FZ1|A Chain A, Crystal Structure Of A Benzthiophene Inhibitor Bound To
Human Cyclin-Dependent Kinase-2 (Cdk-2)
pdb|2WEV|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|3LFN|A Chain A, Crystal Structure Of Cdk2 With Sar57, An Aminoindazole
Type Inhibitor
pdb|3LFQ|A Chain A, Crystal Structure Of Cdk2 With Sar60, An Aminoindazole
Type Inhibitor
pdb|3LFS|A Chain A, Crystal Structure Of Cdk2 With Sar37, An Aminoindazole
Type Inhibitor
pdb|2XMY|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|2XNB|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|3LE6|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Pyrazolobenzodiazepine Inhibitor
pdb|3NS9|A Chain A, Crystal Structure Of Cdk2 In Complex With Inhibitor Bs-194
pdb|3S2P|A Chain A, Crystal Structure Of Cdk2 With A 2-Aminopyrimidine
Compound
pdb|3UNJ|A Chain A, Cdk2 In Complex With Inhibitor Yl1-038-31
pdb|3UNK|A Chain A, Cdk2 In Complex With Inhibitor Yl5-083
pdb|3TI1|A Chain A, Cdk2 In Complex With Sunitinib
pdb|3TIY|A Chain A, Cdk2 In Complex With Nsc 35676
pdb|3TIZ|A Chain A, Cdk2 In Complex With Nsc 111848
Length = 298
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 340 AETLGRGTIGSTYKAVLE-SGFIVTVKRLK-DARYPRLEEFR-RHMDILGRLRHPNLVPL 396
E +G GT G YKA + +G +V +K+++ D + R + +L L HPN+V L
Sbjct: 7 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 66
Query: 397 RAYFQAKEERLLVYDYF 413
+ + LV+++
Sbjct: 67 LDVIHTENKLYLVFEFL 83
>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 298
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 340 AETLGRGTIGSTYKAVLE-SGFIVTVKRLK-DARYPRLEEFR-RHMDILGRLRHPNLVPL 396
E +G GT G YKA + +G +V +K+++ D + R + +L L HPN+V L
Sbjct: 9 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 68
Query: 397 RAYFQAKEERLLVYDYF 413
+ + LV+++
Sbjct: 69 LDVIHTENKLYLVFEFL 85
>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a)
Length = 306
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 362 VTVKRLKDARYP--RLEEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLF 419
V +K LK A Y + +F I+G+ HPN++ L + +++ +Y NGSL
Sbjct: 60 VAIKTLK-AGYTDKQRRDFLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLD 118
Query: 420 SLI 422
+ +
Sbjct: 119 AFL 121
>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain
pdb|2Y6O|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Dasatinib
Length = 291
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 362 VTVKRLKDARYP--RLEEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLF 419
V +K LK A Y + +F I+G+ HPN++ L + +++ +Y NGSL
Sbjct: 45 VAIKTLK-AGYTDKQRRDFLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLD 103
Query: 420 SLI 422
+ +
Sbjct: 104 AFL 106
>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2
Complexed With A Nucleoside Inhibitor
Length = 298
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 340 AETLGRGTIGSTYKAVLE-SGFIVTVKRLK-DARYPRLEEFR-RHMDILGRLRHPNLVPL 396
E +G GT G YKA + +G +V +K+++ D + R + +L L HPN+V L
Sbjct: 7 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 66
Query: 397 RAYFQAKEERLLVYDYF 413
+ + LV+++
Sbjct: 67 LDVIHTENKLYLVFEFL 83
>pdb|3EB0|A Chain A, Crystal Structure Of Cgd4_240 From Cryptosporidium Parvum
In Complex With Indirubin E804
pdb|3EB0|C Chain C, Crystal Structure Of Cgd4_240 From Cryptosporidium Parvum
In Complex With Indirubin E804
Length = 383
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 340 AETLGRGTIGSTYKAV-LESGFIVTVKR-LKDARYPRLEEFRRHMDILGRLRHPNLVPLR 397
+TLG G+ G + +ESG +K+ L+D RY R +DI+ L H N++ L
Sbjct: 12 GKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPRYKN-----RELDIMKVLDHVNIIKLV 66
Query: 398 AYF 400
YF
Sbjct: 67 DYF 69
>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|C Chain C, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JSU|A Chain A, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FQ1|B Chain B, Crystal Structure Of Kinase Associated Phosphatase (Kap)
In Complex With Phospho-Cdk2
pdb|2C6T|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|C Chain C, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|A Chain A, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|C Chain C, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2UZB|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4II5|A Chain A, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|C Chain C, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 298
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 340 AETLGRGTIGSTYKAVLE-SGFIVTVKRLK-DARYPRLEEFR-RHMDILGRLRHPNLVPL 396
E +G GT G YKA + +G +V +K+++ D + R + +L L HPN+V L
Sbjct: 7 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 66
Query: 397 RAYFQAKEERLLVYDYF 413
+ + LV+++
Sbjct: 67 LDVIHTENKLYLVFEFL 83
>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine
Length = 306
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 340 AETLGRGTIGSTYKAVLE-SGFIVTVKRLK-DARYPRLEEFR-RHMDILGRLRHPNLVPL 396
E +G GT G YKA + +G +V +K+++ D + R + +L L HPN+V L
Sbjct: 15 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 74
Query: 397 RAYFQAKEERLLVYDYF 413
+ + LV+++
Sbjct: 75 LDVIHTENKLYLVFEFL 91
>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Pf-03758309
pdb|4APP|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With (S)-N-(5-(3-Benzyl-1-Methylpiperazine-4-
Carbonyl)-6,6-Dimethyl-1,4,5,6-Tetrahydropyrrolo(3,4-C)
Pyrazol-3-Yl)-3-Phenoxybenzamide
Length = 296
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 8/108 (7%)
Query: 319 VFCGPGDQQMSYSLEDLLKASAETLGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRLEE 377
+ PGD + SY L++ +K +G G+ G A V SG +V VK++ + R E
Sbjct: 15 LVVDPGDPR-SY-LDNFIK-----IGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRREL 67
Query: 378 FRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGT 425
+ I+ +H N+V + + +E +V ++ G+L ++ T
Sbjct: 68 LFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHT 115
>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|C Chain C, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|A Chain A, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|C Chain C, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|A Chain A, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|C Chain C, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|A Chain A, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|C Chain C, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|A Chain A, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|C Chain C, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|A Chain A, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|C Chain C, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|A Chain A, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|C Chain C, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|A Chain A, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|C Chain C, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 309
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 340 AETLGRGTIGSTYKAVLE-SGFIVTVKRLK-DARYPRLEEFR-RHMDILGRLRHPNLVPL 396
E +G GT G YKA + +G +V +K+++ D + R + +L L HPN+V L
Sbjct: 12 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 71
Query: 397 RAYFQAKEERLLVYDYF 413
+ + LV+++
Sbjct: 72 LDVIHTENKLYLVFEFL 88
>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Cgp74514a
pdb|2J0I|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 303
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 8/108 (7%)
Query: 319 VFCGPGDQQMSYSLEDLLKASAETLGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRLEE 377
+ PGD + SY L++ +K +G G+ G A V SG +V VK++ + R E
Sbjct: 22 LVVDPGDPR-SY-LDNFIK-----IGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRREL 74
Query: 378 FRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGT 425
+ I+ +H N+V + + +E +V ++ G+L ++ T
Sbjct: 75 LFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHT 122
>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine
pdb|2R3Q|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3M|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3I|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3N|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3O|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3P|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3K|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3J|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3L|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|1W8C|A Chain A, Co-crystal Structure Of
6-cyclohexylmethoxy-8-isopropyl-9h- Purin-2-ylamine And
Monomeric Cdk2
Length = 299
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 340 AETLGRGTIGSTYKAVLE-SGFIVTVKRLK-DARYPRLEEFR-RHMDILGRLRHPNLVPL 396
E +G GT G YKA + +G +V +K+++ D + R + +L L HPN+V L
Sbjct: 8 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 67
Query: 397 RAYFQAKEERLLVYDYF 413
+ + LV+++
Sbjct: 68 LDVIHTENKLYLVFEFL 84
>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form
pdb|2ZV8|A Chain A, Lyn Tyrosine Kinase Domain-Amp-Pnp Complex
pdb|2ZV9|A Chain A, Lyn Tyrosine Kinase Domain-Pp2 Complex
pdb|2ZVA|A Chain A, Lyn Tyrosine Kinase Domain-dasatinib Complex
Length = 279
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 343 LGRGTIGSTYKAVLESGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPLRAYFQA 402
LG G G + + V VK LK ++ F +++ L+H LV L A
Sbjct: 20 LGAGQFGEVWMGYYNNSTKVAVKTLKPGTM-SVQAFLEEANLMKTLQHDKLVRLYAVVTK 78
Query: 403 KEERLLVYDYFPNGSLFSLI 422
+E ++ ++ GSL +
Sbjct: 79 EEPIYIITEFMAKGSLLDFL 98
>pdb|1XH9|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 341 ETLGRGTIGSTYKAV-LESGFIVTVKRLKDARYPRLEEFRRHMD---ILGRLRHPNLVPL 396
+TLG G+ G +E+G +K L + +L+E ++ IL + P LV L
Sbjct: 47 KTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKEIEHTLNEKRILQAVNFPFLVKL 106
Query: 397 RAYFQAKEERLLVYDYFPNGSLFS 420
F+ +V +Y P G +FS
Sbjct: 107 EFSFKDNSNLYMVMEYAPGGEMFS 130
>pdb|1SMH|A Chain A, Protein Kinase A Variant Complex With Completely Ordered
N- Terminal Helix
pdb|1XHA|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 341 ETLGRGTIGSTYKAV-LESGFIVTVKRLKDARYPRLEEFRRHMD---ILGRLRHPNLVPL 396
+TLG G+ G +E+G +K L + +L+E ++ IL + P LV L
Sbjct: 47 KTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKEIEHTLNEKRILQAVNFPFLVKL 106
Query: 397 RAYFQAKEERLLVYDYFPNGSLFS 420
F+ +V +Y P G +FS
Sbjct: 107 EFSFKDNSNLYMVMEYAPGGEMFS 130
>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7
pdb|2WQN|A Chain A, Structure Of Adp-Bound Human Nek7
Length = 310
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 343 LGRGTIGSTYKAV-LESGFIVTVKR-----LKDARYPRLEEFRRHMDILGRLRHPNLVPL 396
+GRG Y+A L G V +K+ L DA+ + + +D+L +L HPN++
Sbjct: 40 IGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAK--ARADCIKEIDLLKQLNHPNVIKY 97
Query: 397 RAYFQAKEERLLVYDYFPNGSLFSLI 422
A F E +V + G L +I
Sbjct: 98 YASFIEDNELNIVLELADAGDLSRMI 123
>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In
Complex With A Consensus Peptide
Length = 301
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 8/108 (7%)
Query: 319 VFCGPGDQQMSYSLEDLLKASAETLGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRLEE 377
+ PGD + SY L++ +K +G G+ G A V SG +V VK++ + R E
Sbjct: 20 LVVDPGDPR-SY-LDNFIK-----IGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRREL 72
Query: 378 FRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGT 425
+ I+ +H N+V + + +E +V ++ G+L ++ T
Sbjct: 73 LFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHT 120
>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain
pdb|4BBM|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
pdb|4BBM|B Chain B, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
Length = 331
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 22/105 (20%)
Query: 343 LGRGTIGSTYKAV-LESGFIVTVKRLKDARYPRLEE--FRRHMDILGRLRHPNLVPLRAY 399
+G G+ G K ++G IV +K+ ++ ++ + R + +L +LRH NLV L
Sbjct: 33 VGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEV 92
Query: 400 FQAKEERLLVYDY-----------FPNG--------SLFSLIHGT 425
+ K+ LV+++ FPNG LF +I+G
Sbjct: 93 CKKKKRWYLVFEFVDHTILDDLELFPNGLDYQVVQKYLFQIINGI 137
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Query: 69 VINQLDQLRVLSFKGNSISGQIPNLLG-LVNLKSLYLNDNNFSGKFPGSLSSLHRLKIIV 127
V + L QL L GN + + L LK L LN N G+ L L+ +
Sbjct: 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS 161
Query: 128 LANNQISGPIPESLSNLKRLYMLYLQDNKF 157
L+ NQ+ + L +L + L N+F
Sbjct: 162 LSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
>pdb|4EUT|A Chain A, Structure Of Bx-795 Complexed With Unphosphorylated Human
Tbk1 Kinase- Uld Domain
pdb|4EUT|B Chain B, Structure Of Bx-795 Complexed With Unphosphorylated Human
Tbk1 Kinase- Uld Domain
Length = 396
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 329 SYSLEDLLKASAETLGRGTIGSTYKAVLE-SGFIVTVKRLKDARYPRLEEFR-RHMDILG 386
S S + L ++ LG+G + ++ + +G + +K + + R + + R ++L
Sbjct: 3 SQSTSNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLK 62
Query: 387 RLRHPNLVPLRAYFQAKEER--LLVYDYFPNGSLFSLI 422
+L H N+V L A + R +L+ ++ P GSL++++
Sbjct: 63 KLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVL 100
>pdb|4FIE|A Chain A, Full-Length Human Pak4
pdb|4FIE|B Chain B, Full-Length Human Pak4
Length = 423
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 8/108 (7%)
Query: 319 VFCGPGDQQMSYSLEDLLKASAETLGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRLEE 377
+ PGD + SY L++ +K +G G+ G A V SG +V VK++ + R E
Sbjct: 142 LVVDPGDPR-SY-LDNFIK-----IGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRREL 194
Query: 378 FRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGT 425
+ I+ +H N+V + + +E +V ++ G+L ++ T
Sbjct: 195 LFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHT 242
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Query: 69 VINQLDQLRVLSFKGNSISGQIPNLLG-LVNLKSLYLNDNNFSGKFPGSLSSLHRLKIIV 127
V + L QL L GN + + L LK L LN N G+ L L+ +
Sbjct: 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS 161
Query: 128 LANNQISGPIPESLSNLKRLYMLYLQDNKF 157
L+ NQ+ + L +L + L N+F
Sbjct: 162 LSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
>pdb|2WEL|A Chain A, Crystal Structure Of Su6656-Bound CalciumCALMODULIN-
Dependent Protein Kinase Ii Delta In Complex With
Calmodulin
Length = 327
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 361 IVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFS 420
I+ K+L + +LE R I L+HPN+V L + LV+D G LF
Sbjct: 36 IINTKKLSARDHQKLE---REARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFE 92
Query: 421 LI 422
I
Sbjct: 93 DI 94
>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1GIJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|2DS1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
Length = 298
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 340 AETLGRGTIGSTYKAVLE-SGFIVTVKRLK-DARYPRLEEFR-RHMDILGRLRHPNLVPL 396
E +G GT G YKA + +G +V +K+++ D + R + +L L HPN+V L
Sbjct: 7 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 66
Query: 397 RAYFQAKEERLLVYDY 412
+ + LV+++
Sbjct: 67 LDVIHTENKLYLVFEH 82
>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain
In Complex With Atp
pdb|3HRF|A Chain A, Crystal Structure Of Human Pdk1 Kinase Domain In Complex
With An Allosteric Activator Bound To The Pif-Pocket
pdb|3RCJ|A Chain A, Rapid Preparation Of Triazolyl Substituted Nh-Heterocyclic
Kinase Inhibitors Via One-Pot Sonogashira Coupling
Tms-Deprotection Cuaac Sequence
pdb|4A06|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Activator Ps114 Bound To The Pif-Pocket
pdb|4AW1|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Compound Ps210 Bound To The Pif-Pocket
Length = 311
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 380 RHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
R D++ RL HP V L FQ E+ Y NG L I
Sbjct: 81 RERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYI 123
>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIF|B Chain B, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIG|A Chain A, Catalytic Domain Of Human Pak4
pdb|4FIG|B Chain B, Catalytic Domain Of Human Pak4
pdb|4FIH|A Chain A, Catalytic Domain Of Human Pak4 With Qkftglprqw Peptide
pdb|4FII|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIJ|A Chain A, Catalytic Domain Of Human Pak4
Length = 346
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 8/108 (7%)
Query: 319 VFCGPGDQQMSYSLEDLLKASAETLGRGTIGSTYKA-VLESGFIVTVKRLKDARYPRLEE 377
+ PGD + SY L++ +K +G G+ G A V SG +V VK++ + R E
Sbjct: 65 LVVDPGDPR-SY-LDNFIK-----IGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRREL 117
Query: 378 FRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGT 425
+ I+ +H N+V + + +E +V ++ G+L ++ T
Sbjct: 118 LFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHT 165
>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Activator Ps171 Bound To The Pif-Pocket
pdb|4AW0|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Compound Ps182 Bound To The Pif-Pocket
Length = 311
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 380 RHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
R D++ RL HP V L FQ E+ Y NG L I
Sbjct: 81 RERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYI 123
>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 309
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 380 RHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
R D++ RL HP V L FQ E+ Y NG L I
Sbjct: 79 RERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYI 121
>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In
Complex With Compound 9
Length = 311
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 380 RHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
R D++ RL HP V L FQ E+ Y NG L I
Sbjct: 81 RERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYI 123
>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through
Fragment-Based Lead Discovery
pdb|3RWQ|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3-
Phosphoinositide Dependent Kinase (Pdk1)
Length = 311
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 380 RHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
R D++ RL HP V L FQ E+ Y NG L I
Sbjct: 81 RERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYI 123
>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 309
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 380 RHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
R D++ RL HP V L FQ E+ Y NG L I
Sbjct: 79 RERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYI 121
>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent
Kinase- 1 (Pdk-1)catalytic Domain Bound To A
Dibenzonaphthyridine Inhibitor
pdb|3ION|A Chain A, Pdk1 In Complex With Compound 8h
Length = 312
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 380 RHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
R D++ RL HP V L FQ E+ Y NG L I
Sbjct: 82 RERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYI 124
>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain
Length = 310
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 380 RHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
R D++ RL HP V L FQ E+ Y NG L I
Sbjct: 79 RERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYI 121
>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i
pdb|3QCQ|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-(3-
Amino-1h-Indazol-6-Yl)-N4-Ethyl-2,4-Pyrimidinediamine
pdb|3QCS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-[2-
Amino-6-(4-Morpholinyl)-4-Pyrimidinyl]-1h-Indazol-3-
Amine
pdb|3QCX|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-{2-
Amino-6-[(3r)-3-Methyl-4-Morpholinyl]-4-Pyrimidinyl}-1h-
Indazol-3- Amine
pdb|3QCY|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 4-[2-
Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-Pyrimidinyl]-N-
Phenyl-2- Morpholinecarboxamide
pdb|3QD0|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With (2r,5s)-
1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-Pyrimidinyl]-6-
Methyl-N- Phenyl-3-Piperidinecarboxamide
pdb|3QD3|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 1,1- Dimethylethyl
{(3r,6s)-1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-
Pyrimidinyl]-6-Methyl-3-Piperidinyl}carbamate
pdb|3QD4|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 1,1-
Dimethylethyl{(3r,
5r)-1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-
Pyrimidinyl]-5-Methyl-3-Piperidinyl}carbamate
Length = 312
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 380 RHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
R D++ RL HP V L FQ E+ Y NG L I
Sbjct: 82 RERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYI 124
>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Ly333531
pdb|1UU7|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-2
pdb|1UU8|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-1
pdb|1OKY|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Staurosporine
pdb|1OKZ|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Ucn-01
Length = 310
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 380 RHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
R D++ RL HP V L FQ E+ Y NG L I
Sbjct: 79 RERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYI 121
>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3-
Phosphoinositide Dependent Kinase (Pdk1)
Length = 311
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 380 RHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
R D++ RL HP V L FQ E+ Y NG L I
Sbjct: 81 RERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYI 123
>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx
pdb|3QC4|B Chain B, Pdk1 In Complex With Dfg-Out Inhibitor Xxx
Length = 314
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 380 RHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
R D++ RL HP V L FQ E+ Y NG L I
Sbjct: 84 RERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYI 126
>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006
pdb|1UWH|B Chain B, The Complex Of Wild Type B-Raf And Bay439006
Length = 276
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 340 AETLGRGTIGSTYKAVLESGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPLRAY 399
+ +G G+ G+ YK V + + +L+ F+ + +L + RH N++ Y
Sbjct: 13 GQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 72
Query: 400 FQAKEERLLVYDYFPNGSLFSLIH 423
A + +V + SL+ +H
Sbjct: 73 STAP-QLAIVTQWCEGSSLYHHLH 95
>pdb|2R5T|A Chain A, Crystal Structure Of Inactive Serum And Glucocorticoid-
Regulated Kinase 1 In Complex With Amp-Pnp
pdb|3HDM|A Chain A, Crystal Structure Of Serum And Glucocorticoid-Regulated
Kinase 1 In Complex With Compound 1
pdb|3HDN|A Chain A, Crystal Structure Of Serum And Glucocorticoid-Regulated
Kinase 1 In Complex With Compound 2
Length = 373
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 341 ETLGRGTIGSTYKAVLESGFIV-TVKRLKDARYPRLEEFRRHMD----ILGRLRHPNLVP 395
+ +G+G+ G A ++ + VK L+ + +E + M +L ++HP LV
Sbjct: 44 KVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVG 103
Query: 396 LRAYFQAKEERLLVYDYFPNGSLFSLIHGTCCL 428
L FQ ++ V DY G LF + C
Sbjct: 104 LHFSFQTADKLYFVLDYINGGELFYHLQRERCF 136
>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7
Length = 311
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 380 RHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
R D++ RL HP V L FQ E+ Y NG L I
Sbjct: 78 RERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYI 120
>pdb|1Z5M|A Chain A, Crystal Structure Of
N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl)
Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2-
Dimethylpropanediamide Complexed With Human Pdk1
pdb|2PE0|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
5-Hydroxy-3-[1-(1h-Pyrrol-2-Yl)-Eth-(Z)-Ylidene]-1,
3-Dihydro- Indol-2-One Complex
pdb|2PE1|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
{2-Oxo-3-[1-(1h-Pyrrol-2-Yl)-Eth-(Z)-Ylidene]-2,
3-Dihydro-1h- Indol-5-Yl}-Urea {bx-517} Complex
pdb|2PE2|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
3-{5-[2-Oxo-5-Ureido-1,
2-Dihydro-Indol-(3z)-Ylidenemethyl]-1h-
Pyrrol-3-Yl}-N-(2-Piperidin-1-Yl-Ethyl)-Benzamide
Complex
Length = 286
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 380 RHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
R D++ RL HP V L FQ E+ Y NG L I
Sbjct: 56 RERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYI 98
>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-3
Length = 286
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 380 RHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
R D++ RL HP V L FQ E+ Y NG L I
Sbjct: 58 RERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYI 100
>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead
Compound
Length = 292
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 380 RHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
R D++ RL HP V L FQ E+ Y NG L I
Sbjct: 63 RERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYI 105
>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8
pdb|3NUU|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment11
pdb|3NUY|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment17
Length = 286
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 380 RHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
R D++ RL HP V L FQ E+ Y NG L I
Sbjct: 57 RERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYI 99
>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7
pdb|1UA2|B Chain B, Crystal Structure Of Human Cdk7
pdb|1UA2|C Chain C, Crystal Structure Of Human Cdk7
pdb|1UA2|D Chain D, Crystal Structure Of Human Cdk7
Length = 346
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 343 LGRGTIGSTYKAVLE-SGFIVTVKRLK-----DARYPRLEEFRRHMDILGRLRHPNLVPL 396
LG G + YKA + + IV +K++K +A+ R + +L L HPN++ L
Sbjct: 18 LGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGL 77
Query: 397 RAYFQAKEERLLVYDYF 413
F K LV+D+
Sbjct: 78 LDAFGHKSNISLVFDFM 94
>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights
Into Receptor Autoregulation
Length = 343
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 12/99 (12%)
Query: 343 LGRGTIGSTYKA------VLESGFIVTVKRLKDARYPRLE-EFRRHMDILGRLRHPNLVP 395
+G G G ++A E +V VK LK+ ++ +F+R ++ +PN+V
Sbjct: 55 IGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVK 114
Query: 396 LRAYFQAKEERLLVYDYFPNGSLFSLI-----HGTCCLA 429
L + L+++Y G L + H C L+
Sbjct: 115 LLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLS 153
>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|E Chain E, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|F Chain F, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|G Chain G, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|H Chain H, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORZ|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3OTU|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator Js30
Length = 316
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 380 RHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
R D++ RL HP V L FQ E+ Y NG L I
Sbjct: 86 RERDVMSRLDHPFFVKLYFCFQDDEKLYFGLSYAKNGELLKYI 128
>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast
Amp-Activated Protein Kinase Snf1
pdb|3HYH|B Chain B, Crystal Structure Of The Protein Kinase Domain Of Yeast
Amp-Activated Protein Kinase Snf1
Length = 275
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 340 AETLGRGTIGSTYKAV-LESGFIVTVKRLKD---ARYPRLEEFRRHMDILGRLRHPNLVP 395
+TLG G+ G A +G V +K + A+ R + L LRHP+++
Sbjct: 18 VKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIK 77
Query: 396 LRAYFQAKEERLLVYDYFPNGSLFSLI 422
L ++K+E ++V +Y N LF I
Sbjct: 78 LYDVIKSKDEIIMVIEYAGN-ELFDYI 103
>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1
Catalytic Domain
pdb|1UVR|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-8
Length = 289
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 380 RHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
R D++ RL HP V L FQ E+ Y NG L I
Sbjct: 59 RERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYI 101
>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6
pdb|3NAY|B Chain B, Pdk1 In Complex With Inhibitor Mp6
Length = 311
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 380 RHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
R D++ RL HP V L FQ E+ Y NG L I
Sbjct: 78 RERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYI 120
>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain
pdb|3DAE|B Chain B, Crystal Structure Of Phosphorylated Snf1 Kinase Domain
Length = 283
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 340 AETLGRGTIGSTYKAV-LESGFIVTVKRLKD---ARYPRLEEFRRHMDILGRLRHPNLVP 395
+TLG G+ G A +G V +K + A+ R + L LRHP+++
Sbjct: 19 VKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIK 78
Query: 396 LRAYFQAKEERLLVYDYFPNGSLFSLI 422
L ++K+E ++V +Y N LF I
Sbjct: 79 LYDVIKSKDEIIMVIEYAGN-ELFDYI 104
>pdb|2C1A|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
Isoquinoline-5-Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl)amide
pdb|2C1B|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
(4r,2s)-5'-(4-(4-Chlorobenzyloxy)pyrrolidin-2-
Ylmethanesulfonyl)isoquinoline
pdb|2VO7|A Chain A, Structure Of Pka Complexed With 4-(4-Chlorobenzyl)-1-(7h-
Pyrrolo(2,3-D)pyrimidin-4-Yl)piperidin-4-Ylamine
pdb|3AG9|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1012
pdb|3AG9|B Chain B, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1012
Length = 351
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 341 ETLGRGTIGSTYKAV-LESGFIVTVKRLKDARYPRLEEFRRHMD---ILGRLRHPNLVPL 396
+TLG G+ G +E+G +K L + +L++ ++ IL + P LV L
Sbjct: 48 KTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKL 107
Query: 397 RAYFQAKEERLLVYDYFPNGSLFS 420
F+ +V +Y P G +FS
Sbjct: 108 EFSFKDNSNLYMVMEYVPGGEMFS 131
>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human
Pdk1 Complex 2
Length = 311
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 380 RHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
R D++ RL HP V L FQ E+ Y NG L I
Sbjct: 81 RERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGCLLKYI 123
>pdb|2F7E|E Chain E, Pka Complexed With
(S)-2-(1h-Indol-3-Yl)-1-(5-Isoquinolin-6-
Yl-Pyridin-3-Yloxymethyl-Etylamine
pdb|2F7X|E Chain E, Protein Kinase A Bound To
(s)-2-(1h-indol-3-yl)-1-[5-((e)-2-
Pyridin-4-yl-vinyl)-pyridin-3-yloxymethyl]-ethylamine
pdb|2F7Z|E Chain E, Protein Kinase A Bound To
(R)-1-(1h-Indol-3-Ylmethyl)-2-(2-
Pyridin-4-Yl-[1,7]naphtyridin-5-Yloxy)-Ehylamine
pdb|2OH0|E Chain E, Crystal Structure Of Protein Kinase A In Complex With
Pyridine-Pyrazolopyridine Based Inhibitors
pdb|2OJF|E Chain E, Crystal Structure Of Protein Kinase A In Complex With
Pyridine-Pyrazolopyridine Based Inhibitors
Length = 351
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 341 ETLGRGTIGSTYKAV-LESGFIVTVKRLKDARYPRLEEFRRHMD---ILGRLRHPNLVPL 396
+TLG G+ G +E+G +K L + +L++ ++ IL + P LV L
Sbjct: 48 KTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKL 107
Query: 397 RAYFQAKEERLLVYDYFPNGSLFS 420
F+ +V +Y P G +FS
Sbjct: 108 EFSFKDNSNLYMVMEYVPGGEMFS 131
>pdb|1SVH|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 8
pdb|1XH5|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|1XH6|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|1XH8|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|2GFC|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
Length = 350
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 341 ETLGRGTIGSTYKAV-LESGFIVTVKRLKDARYPRLEEFRRHMD---ILGRLRHPNLVPL 396
+TLG G+ G +E+G +K L + +L++ ++ IL + P LV L
Sbjct: 47 KTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKL 106
Query: 397 RAYFQAKEERLLVYDYFPNGSLFS 420
F+ +V +Y P G +FS
Sbjct: 107 EFSFKDNSNLYMVMEYVPGGEMFS 130
>pdb|2VN9|A Chain A, Crystal Structure Of Human Calcium Calmodulin Dependent
Protein Kinase Ii Delta Isoform 1, Camkd
pdb|2VN9|B Chain B, Crystal Structure Of Human Calcium Calmodulin Dependent
Protein Kinase Ii Delta Isoform 1, Camkd
Length = 301
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 361 IVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFS 420
I+ K+L + +LE R I L+HPN+V L + LV+D G LF
Sbjct: 36 IINTKKLSARDHQKLE---REARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFE 92
Query: 421 LI 422
I
Sbjct: 93 DI 94
>pdb|2JDS|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
A- 443654
Length = 351
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 341 ETLGRGTIGSTYKAV-LESGFIVTVKRLKDARYPRLEEFRRHMD---ILGRLRHPNLVPL 396
+TLG G+ G +E+G +K L + +L++ ++ IL + P LV L
Sbjct: 48 KTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKL 107
Query: 397 RAYFQAKEERLLVYDYFPNGSLFS 420
F+ +V +Y P G +FS
Sbjct: 108 EFSFKDNSNLYMVMEYVPGGEMFS 131
>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXR|B Chain B, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXS|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complexed With Pp2
Length = 268
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 343 LGRGTIGSTYKAVLESGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPLRAYFQA 402
LG G G + + V VK +K+ +EF + + +L HP LV
Sbjct: 16 LGSGQFGVVKLGKWKGQYDVAVKMIKEGSMSE-DEFFQEAQTMMKLSHPKLVKFYGVCSK 74
Query: 403 KEERLLVYDYFPNGSLFSLI--HG 424
+ +V +Y NG L + + HG
Sbjct: 75 EYPIYIVTEYISNGCLLNYLRSHG 98
>pdb|1Q8W|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In
Complex With Rho-Kinase Inhibitor Fasudil (Ha-1077)
pdb|1XH4|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|3BWJ|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Lead Compound Arc-1034
pdb|3KKV|A Chain A, Structure Of Pka With A Protein Kinase B-Selective
Inhibitor
Length = 350
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 341 ETLGRGTIGSTYKAV-LESGFIVTVKRLKDARYPRLEEFRRHMD---ILGRLRHPNLVPL 396
+TLG G+ G +E+G +K L + +L++ ++ IL + P LV L
Sbjct: 47 KTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKL 106
Query: 397 RAYFQAKEERLLVYDYFPNGSLFS 420
F+ +V +Y P G +FS
Sbjct: 107 EFSFKDNSNLYMVMEYVPGGEMFS 130
>pdb|1STC|E Chain E, Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In
Complex With Staurosporine
pdb|1Q8T|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase
(Pka) In Complex With Rho-Kinase Inhibitor Y-27632
pdb|1Q8U|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In
Complex With Rho-Kinase Inhibitor H-1152p
pdb|1SVE|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 1
pdb|1SVG|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 4
pdb|1VEB|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 5
pdb|3E8C|A Chain A, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|B Chain B, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|C Chain C, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|D Chain D, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|E Chain E, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|F Chain F, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8E|A Chain A, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|B Chain B, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|E Chain E, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|I Chain I, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|L Chain L, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|P Chain P, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
Length = 350
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 341 ETLGRGTIGSTYKAV-LESGFIVTVKRLKDARYPRLEEFRRHMD---ILGRLRHPNLVPL 396
+TLG G+ G +E+G +K L + +L++ ++ IL + P LV L
Sbjct: 47 KTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKL 106
Query: 397 RAYFQAKEERLLVYDYFPNGSLFS 420
F+ +V +Y P G +FS
Sbjct: 107 EFSFKDNSNLYMVMEYVPGGEMFS 130
>pdb|1XH7|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 341 ETLGRGTIGSTYKAV-LESGFIVTVKRLKDARYPRLEEFRRHMD---ILGRLRHPNLVPL 396
+TLG G+ G +E+G +K L + +L++ ++ IL + P LV L
Sbjct: 47 KTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKL 106
Query: 397 RAYFQAKEERLLVYDYFPNGSLFS 420
F+ +V +Y P G +FS
Sbjct: 107 EFSFKDNSNLYMVMEYVPGGEMFS 130
>pdb|3DND|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
pdb|3DNE|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
Length = 350
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 341 ETLGRGTIGSTYKAV-LESGFIVTVKRLKDARYPRLEEFRRHMD---ILGRLRHPNLVPL 396
+TLG G+ G +E+G +K L + +L++ ++ IL + P LV L
Sbjct: 47 KTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKL 106
Query: 397 RAYFQAKEERLLVYDYFPNGSLFS 420
F+ +V +Y P G +FS
Sbjct: 107 EFSFKDNSNLYMVMEYVPGGEMFS 130
>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast
Snf1
Length = 274
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 340 AETLGRGTIGSTYKAV-LESGFIVTVKRLKD---ARYPRLEEFRRHMDILGRLRHPNLVP 395
+TLG G+ G A +G V +K + A+ R + L LRHP+++
Sbjct: 13 VKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIK 72
Query: 396 LRAYFQAKEERLLVYDYFPNGSLFSLI 422
L ++K+E ++V +Y N LF I
Sbjct: 73 LYDVIKSKDEIIMVIEYAGN-ELFDYI 98
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%)
Query: 102 LYLNDNNFSGKFPGSLSSLHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDNKF 157
LYL DN + PG L +L + L NNQ++ L +L L L DN+
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 98
>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of
The Saccharomyces Cerevisiae Ampk Homolog Snf1
Length = 271
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 340 AETLGRGTIGSTYKAV-LESGFIVTVKRLKD---ARYPRLEEFRRHMDILGRLRHPNLVP 395
+TLG G+ G A +G V +K + A+ R + L LRHP+++
Sbjct: 9 VKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIK 68
Query: 396 LRAYFQAKEERLLVYDYFPNGSLFSLI 422
L ++K+E ++V +Y N LF I
Sbjct: 69 LYDVIKSKDEIIMVIEYAGN-ELFDYI 94
>pdb|2UZT|A Chain A, Pka Structures Of Akt, Indazole-Pyridine Inhibitors
pdb|2UZU|E Chain E, Pka Structures Of Indazole-Pyridine Series Of Akt
Inhibitors
pdb|2UZV|A Chain A, Pka Structures Of Indazole-pyridine Series Of Akt
Inhibitors
pdb|2UZW|E Chain E, Pka Structures Of Indazole-Pyridine Series Of Akt
Inhibitors
Length = 336
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 341 ETLGRGTIGSTYKAV-LESGFIVTVKRLKDARYPRLEEFRRHMD---ILGRLRHPNLVPL 396
+TLG G+ G +E+G +K L + +L++ ++ IL + P LV L
Sbjct: 33 KTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKL 92
Query: 397 RAYFQAKEERLLVYDYFPNGSLFS 420
F+ +V +Y P G +FS
Sbjct: 93 EFSFKDNSNLYMVMEYVPGGEMFS 116
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Query: 69 VINQLDQLRVLSFKGNSISG-QIPNLLGLVNLKSLYLNDNNFSGKFPGSLSSLHRLKIIV 127
+ +L QLR ++F N I+ + G + + L N L LK ++
Sbjct: 52 IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111
Query: 128 LANNQISGPIPESLSNLKRLYMLYLQDNKFTGPIP 162
L +N+I+ +S L + +L L DN+ T P
Sbjct: 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Query: 64 TLDEKVINQLDQLRVLSFKGNSI-SGQIPNLLGLVNLKSLYLNDNNFSGKFPGSLSSLHR 122
T+++ L L L GN I S + GL +L+ L + N + + L
Sbjct: 67 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 126
Query: 123 LKIIVLANNQI-SGPIPESLSNLKRLYMLYLQDNKF 157
LK + +A+N I S +PE SNL L L L NK
Sbjct: 127 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
pdb|3G2F|B Chain B, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
Length = 336
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 341 ETLGRGTIGSTYKAVLESGFIVTVKRLKDARYPRLEEFRRHMDI--LGRLRHPNLVPL-- 396
E +GRG G+ YK L+ + +K + + F +I + + H N+
Sbjct: 19 ELIGRGRYGAVYKGSLDERPVA----VKVFSFANRQNFINEKNIYRVPLMEHDNIARFIV 74
Query: 397 ---RAYFQAKEERLLVYDYFPNGSL 418
R + E LLV +Y+PNGSL
Sbjct: 75 GDERVTADGRMEYLLVMEYYPNGSL 99
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Query: 64 TLDEKVINQLDQLRVLSFKGNSI-SGQIPNLLGLVNLKSLYLNDNNFSGKFPGSLSSLHR 122
T+++ L L L GN I S + GL +L+ L + N + + L
Sbjct: 68 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 127
Query: 123 LKIIVLANNQI-SGPIPESLSNLKRLYMLYLQDNKF 157
LK + +A+N I S +PE SNL L L L NK
Sbjct: 128 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure
Length = 344
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 377 EFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
+F I+G+ HPN++ L + ++V + NGSL S +
Sbjct: 63 DFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFL 108
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Query: 64 TLDEKVINQLDQLRVLSFKGNSI-SGQIPNLLGLVNLKSLYLNDNNFSGKFPGSLSSLHR 122
T+++ L L L GN I S + GL +L+ L + N + + L
Sbjct: 67 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 126
Query: 123 LKIIVLANNQI-SGPIPESLSNLKRLYMLYLQDNKF 157
LK + +A+N I S +PE SNL L L L NK
Sbjct: 127 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
pdb|3S95|B Chain B, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
Length = 310
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Query: 340 AETLGRGTIGSTYKAV-LESGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPLRA 398
E LG+G G K E+G ++ +K L F + + ++ L HPN++
Sbjct: 15 GEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIG 74
Query: 399 YFQAKEERLLVYDYFPNGSLFSLI 422
+ + +Y G+L +I
Sbjct: 75 VLYKDKRLNFITEYIKGGTLRGII 98
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%)
Query: 102 LYLNDNNFSGKFPGSLSSLHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDNKF 157
LYL DN + PG L +L + L NNQ++ L +L L L DN+
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
pdb|2R0I|B Chain B, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
Length = 327
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 375 LEEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI--HG 424
L++ R + I+ L HPN+V L + ++ LV +Y G +F + HG
Sbjct: 57 LQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHG 108
>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
pdb|1ZMU|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
Length = 327
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 375 LEEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI--HG 424
L++ R + I+ L HPN+V L + ++ LV +Y G +F + HG
Sbjct: 57 LQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHG 108
>pdb|2GNF|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase With
Y- 27632
Length = 350
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 341 ETLGRGTIGSTYKAV-LESGFIVTVKRLKDARYPRLEEFRRHMD---ILGRLRHPNLVPL 396
+T+G G+ G +E+G +K L + +L++ ++ IL + P LV L
Sbjct: 47 KTIGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKL 106
Query: 397 RAYFQAKEERLLVYDYFPNGSLFS 420
F+ +V +Y P G +FS
Sbjct: 107 EFSFKDNSNLYMVMEYMPGGDMFS 130
>pdb|2GNG|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase
pdb|2GNH|A Chain A, Pka Five Fold Mutant Model Of Rho-Kinase With H1152p
pdb|2GNI|A Chain A, Pka Fivefold Mutant Model Of Rho-Kinase With Inhibitor
Fasudil (Ha1077)
Length = 350
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 341 ETLGRGTIGSTYKAV-LESGFIVTVKRLKDARYPRLEEFRRHMD---ILGRLRHPNLVPL 396
+T+G G+ G +E+G +K L + +L++ ++ IL + P LV L
Sbjct: 47 KTIGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKL 106
Query: 397 RAYFQAKEERLLVYDYFPNGSLFS 420
F+ +V +Y P G +FS
Sbjct: 107 EFSFKDNSNLYMVMEYMPGGDMFS 130
>pdb|1Q24|A Chain A, Pka Double Mutant Model Of Pkb In Complex With Mgatp
pdb|1Q62|A Chain A, Pka Double Mutant Model Of Pkb
Length = 350
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 341 ETLGRGTIGSTYKAV-LESGFIVTVKRLKDARYPRLEEFRRHMD---ILGRLRHPNLVPL 396
+TLG G+ G +E+G +K L + +L++ ++ IL + P LV L
Sbjct: 47 KTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKL 106
Query: 397 RAYFQAKEERLLVYDYFPNGSLFS 420
F+ +V +Y P G +FS
Sbjct: 107 EFSFKDNSNLYMVMEYAPGGEMFS 130
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 102 LYLNDNNFSGKFPGSLSSLHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDNKFTGPI 161
LYL DN + PG L +L + L NNQ++ L +L L L DN+ I
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS-I 93
Query: 162 PPFNQTNLR 170
P NLR
Sbjct: 94 PRGAFDNLR 102
>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|C Chain C, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|D Chain D, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|E Chain E, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|F Chain F, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|G Chain G, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|H Chain H, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
Length = 328
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 375 LEEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI--HG 424
L++ R + I+ L HPN+V L + ++ LV +Y G +F + HG
Sbjct: 58 LQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHG 109
>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
pdb|1ZMV|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
Length = 327
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 375 LEEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI--HG 424
L++ R + I+ L HPN+V L + ++ LV +Y G +F + HG
Sbjct: 57 LQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHG 108
>pdb|1Q61|A Chain A, Pka Triple Mutant Model Of Pkb
Length = 350
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 341 ETLGRGTIGSTYKAV-LESGFIVTVKRLKDARYPRLEEFRRHMD---ILGRLRHPNLVPL 396
+TLG G+ G +E+G +K L + +L++ ++ IL + P LV L
Sbjct: 47 KTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKL 106
Query: 397 RAYFQAKEERLLVYDYFPNGSLFS 420
F+ +V +Y P G +FS
Sbjct: 107 EFSFKDNSNLYMVMEYAPGGEMFS 130
>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
pdb|1ZMW|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
Length = 327
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 375 LEEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI--HG 424
L++ R + I+ L HPN+V L + ++ LV +Y G +F + HG
Sbjct: 57 LQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHG 108
>pdb|1SZM|A Chain A, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein
Kinase A (Pka)
pdb|1SZM|B Chain B, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein
Kinase A (Pka)
Length = 350
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 341 ETLGRGTIGSTYKAV-LESGFIVTVKRLKDARYPRLEEFRRHMD---ILGRLRHPNLVPL 396
+TLG G+ G +E+G +K L + +L++ ++ IL + P LV L
Sbjct: 47 KTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKL 106
Query: 397 RAYFQAKEERLLVYDYFPNGSLFS 420
F+ +V +Y P G +FS
Sbjct: 107 EFSFKDNSNLYMVMEYAPGGEMFS 130
>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742a Triple Mutant
Length = 373
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 377 EFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
+F I+G+ HPN++ L + ++V + NGSL S +
Sbjct: 92 DFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFL 137
>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|B Chain B, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|C Chain C, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|D Chain D, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|E Chain E, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|F Chain F, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
Length = 327
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 375 LEEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI--HG 424
L++ R + I+ L HPN+V L + ++ LV +Y G +F + HG
Sbjct: 57 LQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHG 108
>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|B Chain B, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|C Chain C, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|D Chain D, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
Length = 319
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 375 LEEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI--HG 424
L++ R + I+ L HPN+V L + ++ LV +Y G +F + HG
Sbjct: 50 LQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHG 101
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Query: 64 TLDEKVINQLDQLRVLSFKGNSI-SGQIPNLLGLVNLKSLYLNDNNFSGKFPGSLSSLHR 122
T+++ L L L GN I S + GL +L+ L + N + + L
Sbjct: 66 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125
Query: 123 LKIIVLANNQI-SGPIPESLSNLKRLYMLYLQDNKF 157
LK + +A+N I S +PE SNL L L L NK
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 70 INQLDQLRVLSFKGNSISGQIPNLLGLVNLKSLYLNDNNFSGKFPGSLSSLHRLKIIVLA 129
I + D L L GNS++ + L NL+ L L+ N + P L S +LK
Sbjct: 243 IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFF 301
Query: 130 NNQISGPIPESLSNLKRLYMLYLQDN 155
+N ++ +P NL L L ++ N
Sbjct: 302 DNMVTT-LPWEFGNLCNLQFLGVEGN 326
>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Amp-Pnp Bound
pdb|2QOQ|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Base, Amp-Pnp
Bound Structure
Length = 373
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 377 EFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI 422
+F I+G+ HPN++ L + ++V + NGSL S +
Sbjct: 92 DFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFL 137
>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5Q|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
Length = 348
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 343 LGRGTIGSTYKAV-LESGFIVTVKRLKDARYPRLEEFR---RHMDILGRLRHPNLVPLRA 398
+G G+ G+ Y A + + +V +K++ + E+++ + + L +LRHPN + R
Sbjct: 62 IGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRG 121
Query: 399 YFQAKEERLLVYDY 412
+ + LV +Y
Sbjct: 122 CYLREHTAWLVMEY 135
>pdb|2GNJ|A Chain A, Pka Three Fold Mutant Model Of Rho-Kinase With Y-27632
pdb|2GNL|A Chain A, Pka Threefold Mutant Model Of Rho-Kinase With Inhibitor H-
1152p
Length = 350
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 341 ETLGRGTIGSTYKAV-LESGFIVTVKRLKDARYPRLEEFRRHMD---ILGRLRHPNLVPL 396
+T+G G+ G +E+G +K L + +L++ ++ IL + P LV L
Sbjct: 47 KTIGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKL 106
Query: 397 RAYFQAKEERLLVYDYFPNGSLFS 420
F+ +V +Y P G +FS
Sbjct: 107 EFSFKDNSNLYMVMEYVPGGEMFS 130
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Query: 64 TLDEKVINQLDQLRVLSFKGNSI-SGQIPNLLGLVNLKSLYLNDNNFSGKFPGSLSSLHR 122
T+++ L L L GN I S + GL +L+ L + N + + L
Sbjct: 68 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKT 127
Query: 123 LKIIVLANNQI-SGPIPESLSNLKRLYMLYLQDNKF 157
LK + +A+N I S +PE SNL L L L NK
Sbjct: 128 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure
pdb|2GCD|B Chain B, Tao2 Kinase Domain-Staurosporine Structure
Length = 309
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 343 LGRGTIGSTYKAV-LESGFIVTVKRLK---DARYPRLEEFRRHMDILGRLRHPNLVPLRA 398
+G G+ G+ Y A + + +V +K++ + ++ + + L +LRHPN + R
Sbjct: 23 IGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRG 82
Query: 399 YFQAKEERLLVYDY 412
+ + LV +Y
Sbjct: 83 CYLREHTAWLVMEY 96
>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
pdb|3FE3|B Chain B, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
Length = 328
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 375 LEEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI--HG 424
L++ R + I+ L HPN+V L + ++ L+ +Y G +F + HG
Sbjct: 58 LQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIMEYASGGEVFDYLVAHG 109
>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
pdb|2QNJ|B Chain B, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
Length = 328
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 375 LEEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI--HG 424
L++ R + I+ L HPN+V L + ++ L+ +Y G +F + HG
Sbjct: 55 LQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIMEYASGGEVFDYLVAHG 106
>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
Length = 299
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 340 AETLGRGTIGSTYKAVLE-SGFIVTVKRLK-DARYPRLEEFR-RHMDILGRLRHPNLVPL 396
E +G GT G YKA + +G +V + +++ D + R + +L L HPN+V L
Sbjct: 8 VEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 67
Query: 397 RAYFQAKEERLLVYDYF 413
+ + LV+++
Sbjct: 68 LDVIHTENKLYLVFEFL 84
>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
Length = 298
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 340 AETLGRGTIGSTYKAVLE-SGFIVTVKRLK-DARYPRLEEFR-RHMDILGRLRHPNLVPL 396
E +G GT G YKA + +G +V + +++ D + R + +L L HPN+V L
Sbjct: 7 VEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 66
Query: 397 RAYFQAKEERLLVYDYF 413
+ + LV+++
Sbjct: 67 LDVIHTENKLYLVFEFL 83
>pdb|2PHK|A Chain A, The Crystal Structure Of A Phosphorylase Kinase Peptide
Substrate Complex: Kinase Substrate Recognition
Length = 277
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 380 RHMDILGRLR-HPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGTCCLATR 431
+ +DIL ++ HPN++ L+ ++ LV+D G LF + L+ +
Sbjct: 59 KEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEK 111
>pdb|4H1J|A Chain A, Crystal Structure Of Pyk2 With The Pyrazole 13a
pdb|4H1M|A Chain A, Crystal Structure Of Pyk2 With The Indole 10c
Length = 293
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 8/100 (8%)
Query: 324 GDQQMSYSLEDLLKASAETLGRGTIGSTYKAVLESG----FIVTVKRLK-DARYPRLEEF 378
G Q + ED++ LG G G Y+ V + V VK K D E+F
Sbjct: 15 GSPQYGIAREDVV--LNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKF 72
Query: 379 RRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSL 418
I+ L HP++V L + +E ++ + +P G L
Sbjct: 73 MSEAVIMKNLDHPHIVKLIGIIE-EEPTWIIMELYPYGEL 111
>pdb|3CC6|A Chain A, Crystal Structure Of Kinase Domain Of Protein Tyrosine
Kinase 2 Beta (ptk2b)
Length = 281
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 343 LGRGTIGSTYKAVLESG----FIVTVKRLK-DARYPRLEEFRRHMDILGRLRHPNLVPLR 397
LG G G Y+ V + V VK K D E+F I+ L HP++V L
Sbjct: 20 LGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLI 79
Query: 398 AYFQAKEERLLVYDYFPNGSL 418
+ +E ++ + +P G L
Sbjct: 80 GIIE-EEPTWIIMELYPYGEL 99
>pdb|3FZO|A Chain A, Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosine
Kinase
pdb|3FZP|A Chain A, Crystal Structure Of Pyk2 Complexed With Atpgs
pdb|3FZR|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-431396
pdb|3FZS|A Chain A, Crystal Structure Of Pyk2 Complexed With Birb796
pdb|3FZT|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-4618433
pdb|3H3C|A Chain A, Crystal Structure Of Pyk2 In Complex With Sulfoximine-
Substituted Trifluoromethylpyrimidine Analog
pdb|3ET7|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-2318841
Length = 277
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 343 LGRGTIGSTYKAVLESG----FIVTVKRLK-DARYPRLEEFRRHMDILGRLRHPNLVPLR 397
LG G G Y+ V + V VK K D E+F I+ L HP++V L
Sbjct: 16 LGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLI 75
Query: 398 AYFQAKEERLLVYDYFPNGSL 418
+ +E ++ + +P G L
Sbjct: 76 GIIE-EEPTWIIMELYPYGEL 95
>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5J|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5L|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|C Chain C, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|D Chain D, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V8T|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8T|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8W|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
pdb|3V8W|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
Length = 266
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 340 AETLGRGTIGSTYKAVLESGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPLRAY 399
+ +G G G + + V +K +++ E+F +++ +L HP LV L
Sbjct: 12 VQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSE-EDFIEEAEVMMKLSHPKLVQLYGV 70
Query: 400 FQAKEERLLVYDYFPNGSL 418
+ LV+++ +G L
Sbjct: 71 CLEQAPICLVFEFMEHGCL 89
>pdb|1PHK|A Chain A, Two Structures Of The Catalytic Domain Of Phosphorylase,
Kinase: An Active Protein Kinase Complexed With
Nucleotide, Substrate-Analogue And Product
Length = 298
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 380 RHMDILGRLR-HPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGTCCLATR 431
+ +DIL ++ HPN++ L+ ++ LV+D G LF + L+ +
Sbjct: 72 KEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEK 124
>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase I G
pdb|2JAM|B Chain B, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase I G
Length = 304
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 341 ETLGRGTIGSTY--KAVLESGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPLRA 398
E LG G + K L +G + +K +K + R + +L +++H N+V L
Sbjct: 15 EVLGSGAFSEVFLVKQRL-TGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLED 73
Query: 399 YFQAKEERLLVYDYFPNGSLFSLI 422
+++ LV G LF I
Sbjct: 74 IYESTTHYYLVMQLVSGGELFDRI 97
>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGW|B Chain B, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGY|A Chain A, Crystal Structure Of Itk Inhibitor Complex
pdb|3QGY|B Chain B, Crystal Structure Of Itk Inhibitor Complex
Length = 286
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 340 AETLGRGTIGSTYKAVLESGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPLRAY 399
+ +G G G + + V +K +K+ ++F +++ +L HP LV L
Sbjct: 32 VQEIGSGQFGLVHLGYWLNKDKVAIKTIKEGSMSE-DDFIEEAEVMMKLSHPKLVQLYGV 90
Query: 400 FQAKEERLLVYDYFPNGSL 418
+ LV+++ +G L
Sbjct: 91 CLEQAPICLVFEFMEHGCL 109
>pdb|1QL6|A Chain A, The Catalytic Mechanism Of Phosphorylase Kinase Probed By
Mutational Studies
Length = 298
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 380 RHMDILGRLR-HPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGTCCLATR 431
+ +DIL ++ HPN++ L+ ++ LV+D G LF + L+ +
Sbjct: 72 KEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEK 124
>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52
pdb|4HCU|A Chain A, Crystal Structure Of Itk In Complext With Compound 40
pdb|4HCV|A Chain A, Crystal Structure Of Itk In Complex With Compound 53
Length = 269
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 340 AETLGRGTIGSTYKAVLESGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPLRAY 399
+ +G G G + + V +K +++ E+F +++ +L HP LV L
Sbjct: 15 VQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSE-EDFIEEAEVMMKLSHPKLVQLYGV 73
Query: 400 FQAKEERLLVYDYFPNGSL 418
+ LV+++ +G L
Sbjct: 74 CLEQAPICLVFEFMEHGCL 92
>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SM2|B Chain B, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|A Chain A, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|B Chain B, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNX|A Chain A, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
pdb|1SNX|B Chain B, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
Length = 264
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 340 AETLGRGTIGSTYKAVLESGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPLRAY 399
+ +G G G + + V +K +++ E+F +++ +L HP LV L
Sbjct: 10 VQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSE-EDFIEEAEVMMKLSHPKLVQLYGV 68
Query: 400 FQAKEERLLVYDYFPNGSL 418
+ LV+++ +G L
Sbjct: 69 CLEQAPICLVFEFMEHGCL 87
>pdb|1CTP|E Chain E, Structure Of The Mammalian Catalytic Subunit Of
Camp-Dependent Protein Kinase And An Inhibitor Peptide
Displays An Open Conformation
Length = 350
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 341 ETLGRGTIGSTYKAVL-ESGFIVTVKRLKDARYPRLEEFRRHMD---ILGRLRHPNLVPL 396
+TLG G+ G E+G +K L + +L++ ++ IL + P LV L
Sbjct: 47 KTLGTGSFGRVMLVKHKETGNHFAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKL 106
Query: 397 RAYFQAKEERLLVYDYFPNGSLFS 420
F+ +V +Y P G +FS
Sbjct: 107 EYSFKDNSNLYMVMEYVPGGEMFS 130
>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MIY|B Chain B, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MJ1|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Ro5191614
pdb|3MJ2|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Bms-509744
Length = 266
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 340 AETLGRGTIGSTYKAVLESGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPLRAY 399
+ +G G G + + V +K +++ E+F +++ +L HP LV L
Sbjct: 12 VQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSE-EDFIEEAEVMMKLSHPKLVQLYGV 70
Query: 400 FQAKEERLLVYDYFPNGSL 418
+ LV+++ +G L
Sbjct: 71 CLEQAPICLVFEFMEHGCL 89
>pdb|1VZO|A Chain A, The Structure Of The N-Terminal Kinase Domain Of Msk1
Reveals A Novel Autoinhibitory Conformation For A Dual
Kinase Protein
Length = 355
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 357 ESGFIVTVKRLKDA----RYPRLEEFRRHMDILGRLRH-PNLVPLRAYFQAKEERLLVYD 411
++G + +K LK A + E R +L +R P LV L FQ + + L+ D
Sbjct: 80 DTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLILD 139
Query: 412 YFPNGSLFS 420
Y G LF+
Sbjct: 140 YINGGELFT 148
>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With
Ind E804
Length = 324
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 341 ETLGRGTIGSTYKAVLESGFIVTVKRLKDARYPRLE----EFRRHMDILGRLRHPNLVPL 396
+ LG GT + YK +S + LK+ R E R + +L L+H N+V L
Sbjct: 8 DKLGEGTYATVYKG--KSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTL 65
Query: 397 RAYFQAKEERLLVYDYF 413
++ LV++Y
Sbjct: 66 HDIIHTEKSLTLVFEYL 82
>pdb|1CDK|A Chain A, Camp-Dependent Protein Kinase Catalytic Subunit
(E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein
Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24)
Isoelectric Variant Ca) And Mn2+ Adenylyl
Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c
pdb|1CDK|B Chain B, Camp-Dependent Protein Kinase Catalytic Subunit
(E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein
Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24)
Isoelectric Variant Ca) And Mn2+ Adenylyl
Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c
Length = 350
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 341 ETLGRGTIGSTYKAVL-ESGFIVTVKRLKDARYPRLEEFRRHMD---ILGRLRHPNLVPL 396
+TLG G+ G E+G +K L + +L++ ++ IL + P LV L
Sbjct: 47 KTLGTGSFGRVMLVKHKETGNHFAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKL 106
Query: 397 RAYFQAKEERLLVYDYFPNGSLFS 420
F+ +V +Y P G +FS
Sbjct: 107 EYSFKDNSNLYMVMEYVPGGEMFS 130
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 64 TLDEKVINQLDQLRVLSFKGNSI-SGQIPNLLGLVNLKSLYLNDNNFSG--KFP-GSLSS 119
T+++ L L L GN I S + GL +L+ L + N + FP G L +
Sbjct: 66 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125
Query: 120 LHRLKIIVLANNQI-SGPIPESLSNLKRLYMLYLQDNK 156
L L + A+N I S +PE SNL L L L NK
Sbjct: 126 LKELNV---AHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
>pdb|1CMK|E Chain E, Crystal Structures Of The Myristylated Catalytic Subunit
Of Camp- Dependent Protein Kinase Reveal Open And Closed
Conformations
Length = 350
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 341 ETLGRGTIGSTYKAVL-ESGFIVTVKRLKDARYPRLEEFRRHMD---ILGRLRHPNLVPL 396
+TLG G+ G E+G +K L + +L++ ++ IL + P LV L
Sbjct: 47 KTLGTGSFGRVMLVKHKETGNHFAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKL 106
Query: 397 RAYFQAKEERLLVYDYFPNGSLFS 420
F+ +V +Y P G +FS
Sbjct: 107 EYSFKDNSNLYMVMEYVPGGEMFS 130
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 55/130 (42%), Gaps = 4/130 (3%)
Query: 54 LVLEHLNLTGTLDEKVINQLDQLRVLSF-KGNSISGQIPNLLGLVNLKSLYLNDNNFSGK 112
L L HLN+ D +L +L+VL + PN L +NL SL + N +
Sbjct: 181 LRLRHLNINAIRDYS-FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV 239
Query: 113 FPGSLSSLHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDNKFTGPIP-PFNQTN-LR 170
++ L L+ + L+ N IS L L RL + L + P F N LR
Sbjct: 240 PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLR 299
Query: 171 FFNVSNNDLS 180
NVS N L+
Sbjct: 300 VLNVSGNQLT 309
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 98 NLKSLYLNDNNFSGKFPGSLSSLHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDNKF 157
+L+ L LN+N S PG+ ++L L+ + L +N++ + L L L + +NK
Sbjct: 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116
Query: 158 TGPIPPFNQT--NLRFFNVSNNDL 179
+ Q NL+ V +NDL
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDL 140
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 64 TLDEKVINQLDQLRVLSFKGNSI-SGQIPNLLGLVNLKSLYLNDNNFSG--KFP-GSLSS 119
T+++ L L L GN I S + GL +L+ L + N + FP G L +
Sbjct: 90 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 149
Query: 120 LHRLKIIVLANNQI-SGPIPESLSNLKRLYMLYLQDNK 156
L L + A+N I S +PE SNL L L L NK
Sbjct: 150 LKELNV---AHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 71/159 (44%), Gaps = 21/159 (13%)
Query: 43 IKECLNGRVTKLVLEHLNLTGTLDEKVINQLDQLRVLSFKGNSISGQIPNLLGLVNLKSL 102
+KECL + ++L L LNL+ D N Q+ VL N++ +P L +L+ L
Sbjct: 53 LKECLINQFSELQLNRLNLSSLPD----NLPPQITVLEITQNALIS-LPELPA--SLEYL 105
Query: 103 YLNDNNFSG--KFPGSLSSLHRLKIIVLANNQISGPIPESLSNLKRLYMLYLQDNKFTGP 160
DN S + P S LK + + NNQ++ +PE L L DN
Sbjct: 106 DACDNRLSTLPELPAS------LKHLDVDNNQLTX-LPE----LPALLEYINADNNQLTX 154
Query: 161 IPPFNQTNLRFFNVSNNDLSGQIPVTPALVRFNASSFLL 199
+P T+L +V NN L+ + +L + S+ LL
Sbjct: 155 LPEL-PTSLEVLSVRNNQLTFLPELPESLEALDVSTNLL 192
>pdb|4AE6|A Chain A, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit Calpha 2
pdb|4AE6|B Chain B, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit Calpha 2
Length = 343
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 341 ETLGRGTIGSTYKAVL-ESGFIVTVKRLKDARYPRLEEFRRHMD---ILGRLRHPNLVPL 396
+TLG G+ G E+G +K L + +L++ ++ IL + P LV L
Sbjct: 40 KTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKL 99
Query: 397 RAYFQAKEERLLVYDYFPNGSLFS 420
F+ +V +Y P G +FS
Sbjct: 100 EFSFKDNSNLYMVMEYVPGGEMFS 123
>pdb|3MVJ|A Chain A, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
pdb|3MVJ|B Chain B, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
pdb|3MVJ|E Chain E, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
Length = 371
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 341 ETLGRGTIGSTYKAVL-ESGFIVTVKRLKDARYPRLEEFRRHMD---ILGRLRHPNLVPL 396
+TLG G+ G E+G +K L + +L++ ++ IL + P LV L
Sbjct: 68 KTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKL 127
Query: 397 RAYFQAKEERLLVYDYFPNGSLFS 420
F+ +V +Y P G +FS
Sbjct: 128 EFSFKDNSNLYMVMEYVPGGEMFS 151
>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And
Inactive Conformations Suggests A Mechanism Of
Activation For Tec Family Kinases
Length = 283
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 343 LGRGTIGSTYKAVLESGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPLRAYFQA 402
LG G G + V +K +K+ +EF ++ L H LV L
Sbjct: 32 LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSE-DEFIEEAKVMMNLSHEKLVQLYGVCTK 90
Query: 403 KEERLLVYDYFPNGSLFSLI 422
+ ++ +Y NG L + +
Sbjct: 91 QRPIFIITEYMANGCLLNYL 110
>pdb|3AGM|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-670
pdb|3L9L|A Chain A, Crystal Structure Of Pka With Compound 36
pdb|3L9L|B Chain B, Crystal Structure Of Pka With Compound 36
pdb|3OOG|A Chain A, Human Camp-Dependent Protein Kinase In Complex With A
Small Fragment
pdb|3OVV|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3OWP|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3OXT|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3P0M|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3POO|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
Length = 351
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 341 ETLGRGTIGSTYKAVL-ESGFIVTVKRLKDARYPRLEEFRRHMD---ILGRLRHPNLVPL 396
+TLG G+ G E+G +K L + +L++ ++ IL + P LV L
Sbjct: 48 KTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKL 107
Query: 397 RAYFQAKEERLLVYDYFPNGSLFS 420
F+ +V +Y P G +FS
Sbjct: 108 EFSFKDNSNLYMVMEYVPGGEMFS 131
>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine
Kinase Bound To A Pyrrolopyrimidine-Containing Compound
Length = 283
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 343 LGRGTIGSTYKAVLESGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPLRAYFQA 402
LG G G + V +K +K+ +EF ++ L H LV L
Sbjct: 32 LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSE-DEFIEEAKVMMNLSHEKLVQLYGVCTK 90
Query: 403 KEERLLVYDYFPNGSLFSLI 422
+ ++ +Y NG L + +
Sbjct: 91 QRPIFIITEYMANGCLLNYL 110
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 64 TLDEKVINQLDQLRVLSFKGNSI-SGQIPNLLGLVNLKSLYLNDNNFSG--KFP-GSLSS 119
T+++ L L L GN I S + GL +L+ L + N + FP G L +
Sbjct: 66 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125
Query: 120 LHRLKIIVLANNQI-SGPIPESLSNLKRLYMLYLQDNK 156
L L + A+N I S +PE SNL L L L NK
Sbjct: 126 LKELNV---AHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
>pdb|4AE9|A Chain A, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2
pdb|4AE9|B Chain B, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2
Length = 343
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 341 ETLGRGTIGSTYKAVL-ESGFIVTVKRLKDARYPRLEEFRRHMD---ILGRLRHPNLVPL 396
+TLG G+ G E+G +K L + +L++ ++ IL + P LV L
Sbjct: 40 KTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKL 99
Query: 397 RAYFQAKEERLLVYDYFPNGSLFS 420
F+ +V +Y P G +FS
Sbjct: 100 EFSFKDNSNLYMVMEYVPGGEMFS 123
>pdb|3NX8|A Chain A, Human Camp Dependent Protein Kinase In Complex With Phenol
Length = 351
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 341 ETLGRGTIGSTYKAVL-ESGFIVTVKRLKDARYPRLEEFRRHMD---ILGRLRHPNLVPL 396
+TLG G+ G E+G +K L + +L++ ++ IL + P LV L
Sbjct: 48 KTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKL 107
Query: 397 RAYFQAKEERLLVYDYFPNGSLFS 420
F+ +V +Y P G +FS
Sbjct: 108 EFSFKDNSNLYMVMEYVPGGEMFS 131
>pdb|3AGL|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1039
pdb|3AGL|B Chain B, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1039
pdb|3VQH|A Chain A, Bromine Sad Partially Resolves Multiple Binding Modes For
Pka Inhibitor H-89
Length = 351
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 341 ETLGRGTIGSTYKAVL-ESGFIVTVKRLKDARYPRLEEFRRHMD---ILGRLRHPNLVPL 396
+TLG G+ G E+G +K L + +L++ ++ IL + P LV L
Sbjct: 48 KTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKL 107
Query: 397 RAYFQAKEERLLVYDYFPNGSLFS 420
F+ +V +Y P G +FS
Sbjct: 108 EFSFKDNSNLYMVMEYVPGGEMFS 131
>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Inactive Double Mutant With Selenomethionine
pdb|1Y8G|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Inactive Double Mutant With Selenomethionine
Length = 327
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 375 LEEFRRHMDILGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLI--HG 424
L++ R + I L HPN+V L + ++ LV +Y G +F + HG
Sbjct: 57 LQKLFREVRIXKVLNHPNIVKLFEVIETEKTLYLVXEYASGGEVFDYLVAHG 108
>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|B Chain B, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|C Chain C, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|D Chain D, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|E Chain E, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|F Chain F, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
Length = 285
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 343 LGRGTIGSTYKAVLE---SGFIVTVKRL-KDARYPRLEEFRRHMDILGRLRHPNLVPLRA 398
LG G G + ++E SG +K + KD +E+ +++L L HPN++ +
Sbjct: 30 LGSGAFGDVH--LVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFE 87
Query: 399 YFQAKEERLLVYDYFPNGSLFSLI 422
F+ +V + G L I
Sbjct: 88 VFEDYHNMYIVMETCEGGELLERI 111
>pdb|1GZK|A Chain A, Molecular Mechanism For The Regulation Of Protein Kinase B
Akt By Hydrophobic Motif Phosphorylation
pdb|1GZO|A Chain A, Structure Of Protein Kinase B Unphosphorylated
Length = 315
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 24/91 (26%)
Query: 343 LGRGTIGSTYKAVLESGFIVTVKRLKDARYPRLEEFRRHMDI--------------LGRL 388
LG+GT G ++ V+ RY ++ R+ + I L
Sbjct: 13 LGKGTFGK----------VILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNT 62
Query: 389 RHPNLVPLRAYFQAKEERLLVYDYFPNGSLF 419
RHP L L+ FQ + V +Y G LF
Sbjct: 63 RHPFLTALKYAFQTHDRLCFVMEYANGGELF 93
>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Isopropyl-7-
(4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3-
Ylamino)-2h- Phthalazin-1-One
pdb|3PIY|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With R406
pdb|3PIZ|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
(5-Amino-1-O-
Tolyl-1h-Pyrazol-4-Yl)-[3-(1-Methanesulfonyl-Piperidin-
4-Yl)-Phenyl]- Methanone
pdb|3PJ1|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
3-(2,6-Dichloro-
Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-Phenylamino]-1-
Methyl-3,4- Dihydro-1h-Pyrimido[4,5-D]pyrimidin-2-One
pdb|3PJ2|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-[4-(2-
Diethylamino-Ethoxy)-Phenylamino]-6-(4-Fluoro-Phenoxy)-
8-Methyl-8h- Pyrido[2,3-D]pyrimidin-7-One
pdb|3PJ3|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Methyl-5-[(E)-
(3-Phenyl-Acryloyl)amino]-N-(2-Phenyl-3h-Imidazo[4,
5-B]pyridin-6-Yl)- Benzamide
Length = 274
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 343 LGRGTIGSTYKAVLESGFIVTVKRLKDARYPRLEEFRRHMDILGRLRHPNLVPLRAYFQA 402
LG G G + V +K +K+ +EF ++ L H LV L
Sbjct: 23 LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSE-DEFIEEAKVMMNLSHEKLVQLYGVCTK 81
Query: 403 KEERLLVYDYFPNGSLFSLI 422
+ ++ +Y NG L + +
Sbjct: 82 QRPIFIITEYMANGCLLNYL 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,026,864
Number of Sequences: 62578
Number of extensions: 459894
Number of successful extensions: 1688
Number of sequences better than 100.0: 468
Number of HSP's better than 100.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 199
Number of HSP's that attempted gapping in prelim test: 1143
Number of HSP's gapped (non-prelim): 590
length of query: 457
length of database: 14,973,337
effective HSP length: 102
effective length of query: 355
effective length of database: 8,590,381
effective search space: 3049585255
effective search space used: 3049585255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)