Query 012746
Match_columns 457
No_of_seqs 249 out of 2694
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 15:26:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012746.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012746hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oyw_A RECQ helicase, ATP-depe 100.0 1.4E-66 4.7E-71 525.3 44.8 396 15-428 2-398 (523)
2 2v1x_A ATP-dependent DNA helic 100.0 9.9E-66 3.4E-70 523.9 45.7 394 16-424 22-419 (591)
3 2db3_A ATP-dependent RNA helic 100.0 8.5E-55 2.9E-59 431.3 33.7 343 13-374 54-417 (434)
4 2i4i_A ATP-dependent RNA helic 100.0 7.1E-52 2.4E-56 409.6 33.7 347 14-378 14-396 (417)
5 2j0s_A ATP-dependent RNA helic 100.0 3.8E-51 1.3E-55 403.5 38.0 349 12-380 34-398 (410)
6 3sqw_A ATP-dependent RNA helic 100.0 4.4E-52 1.5E-56 426.9 31.1 344 21-378 27-411 (579)
7 3i5x_A ATP-dependent RNA helic 100.0 1.3E-51 4.3E-56 423.1 30.8 344 21-378 78-462 (563)
8 1s2m_A Putative ATP-dependent 100.0 1.1E-50 3.6E-55 399.0 33.6 346 14-380 20-380 (400)
9 3eiq_A Eukaryotic initiation f 100.0 1.4E-50 4.8E-55 399.9 30.5 349 13-380 38-402 (414)
10 1xti_A Probable ATP-dependent 100.0 1.7E-49 5.9E-54 389.2 37.7 343 15-376 8-369 (391)
11 3pey_A ATP-dependent RNA helic 100.0 6.6E-50 2.3E-54 392.5 33.2 340 14-377 4-369 (395)
12 3fht_A ATP-dependent RNA helic 100.0 1.1E-49 3.7E-54 393.3 33.9 344 13-379 23-394 (412)
13 1hv8_A Putative ATP-dependent 100.0 5.6E-49 1.9E-53 382.0 36.2 341 15-379 6-359 (367)
14 1fuu_A Yeast initiation factor 100.0 1.4E-50 4.6E-55 397.4 18.5 345 12-377 18-378 (394)
15 2z0m_A 337AA long hypothetical 100.0 1.5E-48 5.2E-53 374.6 30.6 325 22-375 1-332 (337)
16 3fmp_B ATP-dependent RNA helic 100.0 9.4E-50 3.2E-54 401.1 13.4 342 13-377 90-459 (479)
17 3oiy_A Reverse gyrase helicase 100.0 2.9E-47 9.9E-52 376.1 28.8 331 23-378 7-376 (414)
18 3fho_A ATP-dependent RNA helic 100.0 4.6E-48 1.6E-52 390.2 14.8 345 15-379 119-485 (508)
19 4gl2_A Interferon-induced heli 100.0 3E-45 1E-49 385.4 17.8 390 38-437 7-598 (699)
20 2va8_A SSO2462, SKI2-type heli 100.0 1.9E-42 6.7E-47 364.0 30.7 324 15-366 8-409 (715)
21 2ykg_A Probable ATP-dependent 100.0 4.2E-44 1.4E-48 376.4 16.3 328 27-373 3-524 (696)
22 3l9o_A ATP-dependent RNA helic 100.0 4E-43 1.4E-47 379.0 24.1 336 15-377 162-610 (1108)
23 4a2p_A RIG-I, retinoic acid in 100.0 1.9E-42 6.6E-47 354.7 27.5 318 35-370 4-513 (556)
24 4ddu_A Reverse gyrase; topoiso 100.0 2.2E-42 7.6E-47 373.2 29.1 329 25-378 66-503 (1104)
25 2p6r_A Afuhel308 helicase; pro 100.0 1.6E-42 5.6E-47 363.4 27.0 328 16-368 2-391 (702)
26 4a4z_A Antiviral helicase SKI2 100.0 2.9E-42 9.9E-47 369.3 27.1 373 24-424 26-563 (997)
27 2zj8_A DNA helicase, putative 100.0 2.4E-42 8.1E-47 363.2 26.0 326 16-368 2-390 (720)
28 3tbk_A RIG-I helicase domain; 100.0 3E-42 1E-46 353.1 23.6 316 38-373 4-515 (555)
29 1gm5_A RECG; helicase, replica 100.0 1.8E-42 6.1E-47 359.9 21.4 316 23-365 354-697 (780)
30 2xgj_A ATP-dependent RNA helic 100.0 3.8E-41 1.3E-45 360.7 31.8 320 31-377 80-512 (1010)
31 1wp9_A ATP-dependent RNA helic 100.0 1.2E-40 4.3E-45 335.4 33.5 312 38-368 9-478 (494)
32 2eyq_A TRCF, transcription-rep 100.0 4.3E-40 1.5E-44 357.6 38.0 323 17-365 583-922 (1151)
33 4a2q_A RIG-I, retinoic acid in 100.0 3.1E-41 1.1E-45 358.1 28.2 319 33-369 243-753 (797)
34 4f92_B U5 small nuclear ribonu 100.0 1.4E-40 4.9E-45 370.9 32.5 385 15-417 901-1365(1724)
35 1tf5_A Preprotein translocase 100.0 1.1E-39 3.9E-44 332.5 34.1 315 33-366 79-546 (844)
36 4a2w_A RIG-I, retinoic acid in 100.0 3.8E-40 1.3E-44 353.3 28.4 316 33-368 243-752 (936)
37 1gku_B Reverse gyrase, TOP-RG; 100.0 2.5E-40 8.6E-45 357.5 23.0 325 24-378 44-467 (1054)
38 4f92_B U5 small nuclear ribonu 100.0 2.1E-39 7.2E-44 361.6 22.4 331 35-382 76-490 (1724)
39 2jlq_A Serine protease subunit 100.0 8.5E-40 2.9E-44 324.6 14.2 283 35-364 1-310 (451)
40 2whx_A Serine protease/ntpase/ 100.0 4.6E-40 1.6E-44 336.0 11.1 305 20-375 155-491 (618)
41 2oca_A DAR protein, ATP-depend 100.0 1.6E-39 5.6E-44 329.2 14.9 299 38-363 113-453 (510)
42 2fwr_A DNA repair protein RAD2 100.0 2.3E-39 7.8E-44 325.0 15.7 291 38-364 93-453 (472)
43 2fsf_A Preprotein translocase 100.0 2.7E-37 9.2E-42 314.2 28.6 317 31-366 68-584 (853)
44 2wv9_A Flavivirin protease NS2 100.0 9.9E-40 3.4E-44 335.5 10.3 287 38-373 215-544 (673)
45 1nkt_A Preprotein translocase 100.0 1.5E-36 5.3E-41 308.9 33.2 320 29-367 103-619 (922)
46 1yks_A Genome polyprotein [con 100.0 2.2E-39 7.4E-44 320.2 10.9 277 50-375 5-312 (440)
47 3h1t_A Type I site-specific re 100.0 7.8E-37 2.7E-41 314.6 24.6 295 38-354 178-545 (590)
48 2xau_A PRE-mRNA-splicing facto 100.0 4E-37 1.4E-41 321.9 21.4 327 13-367 70-445 (773)
49 2z83_A Helicase/nucleoside tri 100.0 5.5E-38 1.9E-42 312.0 11.1 272 48-365 16-313 (459)
50 3dmq_A RNA polymerase-associat 100.0 9.9E-36 3.4E-40 319.5 27.3 314 38-362 153-610 (968)
51 3o8b_A HCV NS3 protease/helica 100.0 3.1E-37 1.1E-41 312.2 12.5 275 38-369 217-518 (666)
52 2v6i_A RNA helicase; membrane, 100.0 2.4E-36 8.4E-41 297.8 17.8 265 52-362 1-288 (431)
53 3rc3_A ATP-dependent RNA helic 100.0 3E-34 1E-38 293.9 25.7 291 47-381 149-460 (677)
54 1z63_A Helicase of the SNF2/RA 100.0 3E-34 1E-38 289.9 23.4 302 38-365 37-453 (500)
55 1z3i_X Similar to RAD54-like; 100.0 2.7E-31 9.2E-36 274.4 32.8 368 38-419 55-584 (644)
56 3jux_A Protein translocase sub 100.0 8.7E-31 3E-35 261.2 34.6 178 196-379 412-608 (822)
57 3mwy_W Chromo domain-containin 100.0 2.3E-31 7.7E-36 281.7 23.6 327 37-377 235-698 (800)
58 1c4o_A DNA nucleotide excision 100.0 2.9E-28 1E-32 251.4 27.8 200 160-373 327-558 (664)
59 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 4.3E-29 1.5E-33 266.1 21.2 319 23-363 250-707 (1038)
60 2hjv_A ATP-dependent RNA helic 100.0 1.2E-27 4.1E-32 203.8 19.6 151 227-378 5-155 (163)
61 3fe2_A Probable ATP-dependent 100.0 8.6E-28 2.9E-32 218.8 19.5 195 11-225 25-237 (242)
62 3iuy_A Probable ATP-dependent 100.0 7.1E-28 2.4E-32 217.4 16.0 192 12-223 16-226 (228)
63 2d7d_A Uvrabc system protein B 100.0 1.2E-26 4.1E-31 239.3 27.2 128 245-373 430-564 (661)
64 1q0u_A Bstdead; DEAD protein, 100.0 1.4E-27 4.8E-32 214.1 17.3 196 15-230 4-216 (219)
65 2rb4_A ATP-dependent RNA helic 100.0 3.9E-27 1.3E-31 203.2 19.4 151 229-379 5-161 (175)
66 1vec_A ATP-dependent RNA helic 100.0 2.7E-27 9.4E-32 210.1 17.5 188 15-222 3-204 (206)
67 3eaq_A Heat resistant RNA depe 100.0 4.4E-27 1.5E-31 209.0 18.7 139 242-380 15-153 (212)
68 2pl3_A Probable ATP-dependent 99.9 6.5E-27 2.2E-31 212.3 19.4 193 12-225 22-232 (236)
69 3bor_A Human initiation factor 99.9 3.3E-27 1.1E-31 214.2 17.0 194 12-224 27-233 (237)
70 3ber_A Probable ATP-dependent 99.9 5.6E-27 1.9E-31 214.0 18.2 194 11-224 39-246 (249)
71 1fuk_A Eukaryotic initiation f 99.9 3.7E-27 1.3E-31 201.3 15.6 144 236-379 8-151 (165)
72 3ly5_A ATP-dependent RNA helic 99.9 7.2E-27 2.5E-31 215.0 18.7 187 11-215 48-254 (262)
73 2oxc_A Probable ATP-dependent 99.9 6.6E-27 2.3E-31 211.3 18.0 192 13-224 22-227 (230)
74 2gxq_A Heat resistant RNA depe 99.9 1.5E-26 5.1E-31 205.5 18.4 189 16-224 2-204 (207)
75 1t6n_A Probable ATP-dependent 99.9 3.5E-26 1.2E-30 205.2 20.9 191 14-223 13-218 (220)
76 2jgn_A DBX, DDX3, ATP-dependen 99.9 1.2E-26 4E-31 201.6 16.6 151 228-379 16-167 (185)
77 1t5i_A C_terminal domain of A 99.9 1.5E-26 5.3E-31 198.5 17.0 136 243-378 16-152 (172)
78 1qde_A EIF4A, translation init 99.9 1.5E-26 5.3E-31 208.1 16.2 192 12-224 11-215 (224)
79 3fmo_B ATP-dependent RNA helic 99.9 6.3E-27 2.2E-31 219.3 14.0 189 13-224 90-296 (300)
80 3dkp_A Probable ATP-dependent 99.9 1.7E-26 5.8E-31 210.8 15.1 192 21-225 35-240 (245)
81 2p6n_A ATP-dependent RNA helic 99.9 3.7E-26 1.3E-30 199.2 16.3 146 229-376 27-173 (191)
82 1wrb_A DJVLGB; RNA helicase, D 99.9 2E-27 6.7E-32 218.0 8.5 193 12-224 20-238 (253)
83 3i32_A Heat resistant RNA depe 99.9 1.1E-25 3.9E-30 209.1 17.7 138 243-380 13-150 (300)
84 2ipc_A Preprotein translocase 99.9 7.4E-23 2.5E-27 208.1 35.0 316 27-366 69-699 (997)
85 2yjt_D ATP-dependent RNA helic 99.9 1.6E-27 5.6E-32 204.5 0.0 135 243-377 15-149 (170)
86 2vl7_A XPD; helicase, unknown 99.9 6.1E-23 2.1E-27 207.6 21.4 75 34-109 4-82 (540)
87 3crv_A XPD/RAD3 related DNA he 99.9 9.8E-20 3.4E-24 184.9 26.6 316 35-365 1-531 (551)
88 1z5z_A Helicase of the SNF2/RA 99.8 4E-20 1.4E-24 169.7 11.0 123 243-365 95-224 (271)
89 3b6e_A Interferon-induced heli 99.8 1.1E-19 3.7E-24 162.2 10.5 156 34-202 29-216 (216)
90 2fz4_A DNA repair protein RAD2 99.8 7.6E-19 2.6E-23 158.5 12.8 139 38-207 93-232 (237)
91 1rif_A DAR protein, DNA helica 99.8 6.1E-19 2.1E-23 164.0 11.4 145 38-207 113-266 (282)
92 4a15_A XPD helicase, ATP-depen 99.8 1E-17 3.5E-22 171.4 21.2 161 196-364 378-583 (620)
93 3llm_A ATP-dependent RNA helic 99.7 5.6E-17 1.9E-21 146.4 14.8 158 38-216 61-228 (235)
94 1w36_D RECD, exodeoxyribonucle 98.7 8E-08 2.7E-12 98.2 12.3 78 23-100 134-218 (608)
95 4b3f_X DNA-binding protein smu 98.2 3.5E-06 1.2E-10 87.0 10.7 70 38-107 189-262 (646)
96 2gk6_A Regulator of nonsense t 98.2 2.1E-05 7.3E-10 80.6 14.3 69 36-104 178-250 (624)
97 2xzl_A ATP-dependent helicase 98.0 4.4E-05 1.5E-09 80.1 13.3 69 36-104 358-430 (802)
98 2wjy_A Regulator of nonsense t 98.0 5.1E-05 1.7E-09 79.6 13.0 69 37-105 355-427 (800)
99 3upu_A ATP-dependent DNA helic 97.9 2.6E-05 8.8E-10 77.0 9.0 65 34-98 21-94 (459)
100 3e1s_A Exodeoxyribonuclease V, 97.9 2.9E-05 9.8E-10 78.5 8.9 60 38-97 189-251 (574)
101 3hgt_A HDA1 complex subunit 3; 97.8 0.00024 8.1E-09 65.3 12.8 126 244-374 109-246 (328)
102 3lfu_A DNA helicase II; SF1 he 97.7 0.0033 1.1E-07 64.7 20.7 63 37-101 8-77 (647)
103 3vkw_A Replicase large subunit 97.1 0.0011 3.8E-08 63.8 8.0 43 56-100 164-206 (446)
104 2o0j_A Terminase, DNA packagin 96.9 0.0098 3.4E-07 56.5 12.3 63 38-100 163-230 (385)
105 3ec2_A DNA replication protein 96.8 0.012 4E-07 49.6 11.2 30 41-70 17-55 (180)
106 3te6_A Regulatory protein SIR3 96.7 0.025 8.4E-07 52.3 13.2 18 53-70 45-62 (318)
107 2qby_B CDC6 homolog 3, cell di 96.4 0.029 1E-06 53.4 12.2 17 54-70 46-62 (384)
108 3eie_A Vacuolar protein sortin 96.2 0.015 5E-07 54.2 9.1 55 10-71 10-69 (322)
109 2chg_A Replication factor C sm 96.2 0.066 2.2E-06 46.2 12.7 17 54-70 39-55 (226)
110 2b8t_A Thymidine kinase; deoxy 96.2 0.0028 9.7E-08 55.4 3.5 37 52-88 11-50 (223)
111 3cpe_A Terminase, DNA packagin 96.1 0.024 8.3E-07 57.5 10.6 63 38-100 163-230 (592)
112 1a5t_A Delta prime, HOLB; zinc 96.1 0.016 5.5E-07 54.2 8.4 33 39-71 3-42 (334)
113 3vfd_A Spastin; ATPase, microt 96.0 0.011 3.6E-07 56.8 6.9 33 53-85 148-180 (389)
114 1sxj_B Activator 1 37 kDa subu 95.9 0.037 1.3E-06 51.2 10.2 16 55-70 44-59 (323)
115 1d2n_A N-ethylmaleimide-sensit 95.9 0.017 5.9E-07 52.2 7.4 18 54-71 65-82 (272)
116 3co5_A Putative two-component 95.9 0.034 1.2E-06 44.8 8.3 21 51-71 25-45 (143)
117 3h4m_A Proteasome-activating n 95.8 0.011 3.7E-07 53.9 5.7 55 14-71 13-69 (285)
118 3pvs_A Replication-associated 95.7 0.012 4.2E-07 57.3 5.9 19 54-72 51-69 (447)
119 1g5t_A COB(I)alamin adenosyltr 95.7 0.027 9.3E-07 47.8 7.3 132 54-207 29-166 (196)
120 3cf0_A Transitional endoplasmi 95.6 0.062 2.1E-06 49.3 10.1 55 14-72 11-68 (301)
121 2zpa_A Uncharacterized protein 95.5 0.047 1.6E-06 55.4 9.4 55 38-92 175-231 (671)
122 2p65_A Hypothetical protein PF 95.5 0.035 1.2E-06 46.5 7.5 18 53-70 43-60 (187)
123 2q6t_A DNAB replication FORK h 95.5 0.05 1.7E-06 53.1 9.5 118 53-172 200-324 (444)
124 1l8q_A Chromosomal replication 95.5 0.078 2.7E-06 49.2 10.5 19 53-71 37-55 (324)
125 1xwi_A SKD1 protein; VPS4B, AA 95.5 0.03 1E-06 52.1 7.5 54 14-71 8-63 (322)
126 3b9p_A CG5977-PA, isoform A; A 95.5 0.037 1.3E-06 50.6 8.1 19 53-71 54-72 (297)
127 2r6a_A DNAB helicase, replicat 95.4 0.064 2.2E-06 52.5 10.0 116 52-172 202-327 (454)
128 2j9r_A Thymidine kinase; TK1, 95.4 0.019 6.6E-07 49.4 5.5 36 54-89 29-67 (214)
129 1jbk_A CLPB protein; beta barr 95.4 0.31 1.1E-05 40.6 13.3 17 54-70 44-60 (195)
130 2v1u_A Cell division control p 95.4 0.1 3.4E-06 49.5 11.2 18 53-70 44-61 (387)
131 1uaa_A REP helicase, protein ( 95.4 0.015 5.2E-07 60.1 5.7 62 38-101 2-70 (673)
132 4a1f_A DNAB helicase, replicat 95.4 0.042 1.4E-06 51.2 8.1 143 52-202 45-205 (338)
133 2zan_A Vacuolar protein sortin 95.4 0.057 1.9E-06 52.7 9.4 18 54-71 168-185 (444)
134 2qp9_X Vacuolar protein sortin 95.4 0.041 1.4E-06 51.9 8.1 18 54-71 85-102 (355)
135 1pjr_A PCRA; DNA repair, DNA r 95.3 0.02 6.7E-07 59.7 6.2 63 37-101 10-79 (724)
136 1sxj_D Activator 1 41 kDa subu 95.3 0.2 6.8E-06 46.8 12.8 17 54-70 59-75 (353)
137 4b4t_J 26S protease regulatory 95.3 0.025 8.7E-07 53.8 6.3 55 13-71 143-200 (405)
138 2qz4_A Paraplegin; AAA+, SPG7, 95.3 0.027 9.1E-07 50.5 6.3 19 53-71 39-57 (262)
139 1iqp_A RFCS; clamp loader, ext 95.2 0.2 6.7E-06 46.3 12.3 16 55-70 48-63 (327)
140 2w58_A DNAI, primosome compone 95.2 0.2 6.9E-06 42.6 11.5 17 54-70 55-71 (202)
141 3syl_A Protein CBBX; photosynt 95.2 0.19 6.6E-06 46.0 12.1 17 54-70 68-84 (309)
142 3u61_B DNA polymerase accessor 95.2 0.077 2.6E-06 49.2 9.4 40 158-204 105-146 (324)
143 2gno_A DNA polymerase III, gam 95.2 0.049 1.7E-06 50.1 7.8 41 157-203 81-121 (305)
144 2kjq_A DNAA-related protein; s 95.1 0.057 1.9E-06 43.8 7.3 19 52-70 35-53 (149)
145 3u4q_A ATP-dependent helicase/ 95.0 0.029 1E-06 62.0 6.8 61 38-100 10-79 (1232)
146 1sxj_A Activator 1 95 kDa subu 95.0 0.061 2.1E-06 53.5 8.6 42 159-204 149-190 (516)
147 1xx6_A Thymidine kinase; NESG, 94.9 0.017 5.7E-07 49.2 3.7 36 53-88 8-46 (191)
148 1gm5_A RECG; helicase, replica 94.8 0.06 2.1E-06 56.2 8.1 77 258-334 417-498 (780)
149 4b4t_L 26S protease subunit RP 94.8 0.034 1.2E-06 53.6 5.8 57 12-71 175-233 (437)
150 1fnn_A CDC6P, cell division co 94.8 0.26 8.9E-06 46.7 12.2 16 55-70 46-61 (389)
151 3d8b_A Fidgetin-like protein 1 94.8 0.034 1.2E-06 52.5 5.8 32 53-84 117-148 (357)
152 2chq_A Replication factor C sm 94.7 0.057 2E-06 49.7 7.1 16 55-70 40-55 (319)
153 3bh0_A DNAB-like replicative h 94.7 0.37 1.3E-05 44.4 12.5 35 52-86 67-104 (315)
154 1njg_A DNA polymerase III subu 94.7 0.42 1.5E-05 41.5 12.4 16 55-70 47-62 (250)
155 3cf2_A TER ATPase, transitiona 94.6 0.046 1.6E-06 56.9 6.7 70 13-83 472-541 (806)
156 3bos_A Putative DNA replicatio 94.6 0.049 1.7E-06 47.8 6.1 18 53-70 52-69 (242)
157 2qgz_A Helicase loader, putati 94.6 0.046 1.6E-06 50.4 6.0 18 53-70 152-169 (308)
158 4b4t_H 26S protease regulatory 94.6 0.044 1.5E-06 52.9 6.0 57 12-71 203-261 (467)
159 3t15_A Ribulose bisphosphate c 94.6 0.065 2.2E-06 49.0 7.0 18 54-71 37-54 (293)
160 4b4t_I 26S protease regulatory 94.6 0.058 2E-06 51.6 6.6 57 12-71 176-234 (437)
161 4b4t_M 26S protease regulatory 94.4 0.034 1.2E-06 53.6 4.8 57 12-71 175-233 (434)
162 2z4s_A Chromosomal replication 94.3 0.28 9.7E-06 47.6 11.3 17 54-70 131-147 (440)
163 3hu3_A Transitional endoplasmi 94.3 0.063 2.2E-06 52.9 6.6 19 54-72 239-257 (489)
164 2orv_A Thymidine kinase; TP4A 94.3 0.087 3E-06 45.9 6.6 37 53-89 19-58 (234)
165 4b4t_K 26S protease regulatory 94.2 0.059 2E-06 51.9 5.9 56 13-71 167-224 (428)
166 3pfi_A Holliday junction ATP-d 94.0 0.14 4.7E-06 47.8 8.0 18 54-71 56-73 (338)
167 1jr3_A DNA polymerase III subu 94.0 0.39 1.3E-05 45.2 11.2 16 55-70 40-55 (373)
168 1sxj_C Activator 1 40 kDa subu 94.0 0.45 1.5E-05 44.3 11.5 40 159-204 111-150 (340)
169 2qby_A CDC6 homolog 1, cell di 93.9 0.25 8.4E-06 46.7 9.8 18 53-70 45-62 (386)
170 3oiy_A Reverse gyrase helicase 93.7 0.12 4E-06 49.8 7.2 79 256-334 62-147 (414)
171 3dm5_A SRP54, signal recogniti 93.7 0.72 2.5E-05 44.4 12.5 45 55-99 102-151 (443)
172 2cvh_A DNA repair and recombin 93.6 0.21 7.1E-06 43.1 8.0 35 52-86 19-53 (220)
173 1lv7_A FTSH; alpha/beta domain 93.6 0.13 4.5E-06 45.8 6.8 17 54-70 46-62 (257)
174 3kl4_A SRP54, signal recogniti 93.4 1 3.6E-05 43.2 13.0 50 157-208 178-228 (433)
175 2w0m_A SSO2452; RECA, SSPF, un 93.3 0.49 1.7E-05 41.0 10.1 34 52-85 22-58 (235)
176 2dr3_A UPF0273 protein PH0284; 93.3 0.98 3.4E-05 39.5 12.0 51 52-103 22-75 (247)
177 1sxj_E Activator 1 40 kDa subu 93.2 1.1 3.7E-05 41.8 12.8 17 55-71 38-54 (354)
178 3cf2_A TER ATPase, transitiona 92.9 0.25 8.5E-06 51.5 8.4 29 54-82 239-267 (806)
179 1hqc_A RUVB; extended AAA-ATPa 92.9 0.65 2.2E-05 42.7 10.6 17 54-70 39-55 (324)
180 3e2i_A Thymidine kinase; Zn-bi 92.5 0.16 5.3E-06 43.7 5.2 37 53-89 28-67 (219)
181 1v5w_A DMC1, meiotic recombina 92.5 0.28 9.7E-06 45.8 7.6 50 54-103 123-182 (343)
182 1w5s_A Origin recognition comp 92.4 1.7 5.7E-05 41.4 13.2 17 54-70 51-69 (412)
183 4ddu_A Reverse gyrase; topoiso 92.2 0.21 7E-06 54.5 7.0 78 256-334 119-204 (1104)
184 3bgw_A DNAB-like replicative h 91.6 2.3 8E-05 41.1 13.0 36 52-87 196-234 (444)
185 2ce7_A Cell division protein F 91.4 0.27 9.1E-06 48.1 6.2 18 54-71 50-67 (476)
186 2qen_A Walker-type ATPase; unk 91.1 3.9 0.00013 37.6 13.9 18 53-70 31-48 (350)
187 1ixz_A ATP-dependent metallopr 91.0 0.61 2.1E-05 41.2 7.8 56 12-71 10-67 (254)
188 2eyq_A TRCF, transcription-rep 90.9 0.71 2.4E-05 50.6 9.6 77 256-332 650-731 (1151)
189 1r6b_X CLPA protein; AAA+, N-t 90.9 0.6 2.1E-05 48.8 8.7 18 53-70 207-224 (758)
190 1w4r_A Thymidine kinase; type 90.8 0.22 7.6E-06 42.1 4.3 35 53-87 20-57 (195)
191 2vhj_A Ntpase P4, P4; non- hyd 90.7 0.39 1.3E-05 44.1 6.1 20 52-71 122-141 (331)
192 3n70_A Transport activator; si 90.5 0.2 6.8E-06 40.2 3.6 20 52-71 23-42 (145)
193 2z43_A DNA repair and recombin 90.4 0.7 2.4E-05 42.7 7.8 51 53-103 107-167 (324)
194 2zts_A Putative uncharacterize 90.2 0.059 2E-06 47.7 0.2 50 52-102 29-82 (251)
195 1vma_A Cell division protein F 89.8 3.4 0.00012 37.7 11.8 32 54-85 105-139 (306)
196 2fna_A Conserved hypothetical 89.8 5.7 0.00019 36.6 13.8 17 54-70 31-47 (357)
197 3hws_A ATP-dependent CLP prote 89.8 0.83 2.8E-05 42.9 7.9 20 53-72 51-70 (363)
198 3cmu_A Protein RECA, recombina 89.6 0.46 1.6E-05 54.3 6.7 44 47-90 1415-1467(2050)
199 1n0w_A DNA repair protein RAD5 89.4 1.8 6E-05 37.7 9.3 20 52-71 23-42 (243)
200 3ber_A Probable ATP-dependent 89.2 1.7 5.8E-05 38.3 9.1 73 256-332 109-192 (249)
201 1iy2_A ATP-dependent metallopr 88.9 0.88 3E-05 40.9 7.1 54 13-71 35-91 (278)
202 1qvr_A CLPB protein; coiled co 88.9 1.4 4.7E-05 46.8 9.5 18 54-71 192-209 (854)
203 1ypw_A Transitional endoplasmi 88.7 0.85 2.9E-05 47.9 7.7 20 53-72 238-257 (806)
204 1oyw_A RECQ helicase, ATP-depe 88.5 0.75 2.6E-05 45.7 6.9 59 258-316 65-123 (523)
205 2dhr_A FTSH; AAA+ protein, hex 88.5 1.1 3.7E-05 44.1 7.8 18 54-71 65-82 (499)
206 1t6n_A Probable ATP-dependent 88.4 1.4 4.9E-05 37.7 7.9 72 258-332 82-164 (220)
207 1nlf_A Regulatory protein REPA 88.4 6.4 0.00022 35.1 12.5 22 50-71 27-48 (279)
208 1cr0_A DNA primase/helicase; R 88.2 2.6 8.9E-05 38.1 9.9 34 52-85 34-71 (296)
209 2rb4_A ATP-dependent RNA helic 87.9 2.2 7.7E-05 35.1 8.5 80 57-139 12-93 (175)
210 2hjv_A ATP-dependent RNA helic 87.7 2.3 7.8E-05 34.5 8.4 60 77-138 34-93 (163)
211 1q57_A DNA primase/helicase; d 87.5 2.1 7.3E-05 42.1 9.5 46 52-98 241-290 (503)
212 2v1x_A ATP-dependent DNA helic 87.5 0.79 2.7E-05 46.3 6.4 59 258-316 84-144 (591)
213 2p6n_A ATP-dependent RNA helic 87.1 4.9 0.00017 33.6 10.3 72 63-137 39-111 (191)
214 2px0_A Flagellar biosynthesis 87.0 3.3 0.00011 37.6 9.7 33 53-85 105-141 (296)
215 2yhs_A FTSY, cell division pro 86.8 5.8 0.0002 38.7 11.7 30 55-84 295-327 (503)
216 3m6a_A ATP-dependent protease 86.7 0.86 3E-05 45.5 6.1 19 53-71 108-126 (543)
217 3fe2_A Probable ATP-dependent 86.6 1.7 5.8E-05 38.0 7.4 72 257-332 101-182 (242)
218 1xp8_A RECA protein, recombina 86.3 2.3 7.8E-05 39.9 8.4 43 45-87 60-111 (366)
219 1t5i_A C_terminal domain of A 86.3 3.1 0.00011 34.2 8.4 61 77-139 30-90 (172)
220 1ofh_A ATP-dependent HSL prote 86.0 1.4 4.9E-05 39.9 6.9 19 53-71 50-68 (310)
221 1qvr_A CLPB protein; coiled co 86.0 0.94 3.2E-05 48.0 6.2 16 55-70 590-605 (854)
222 2x8a_A Nuclear valosin-contain 85.5 0.39 1.3E-05 43.3 2.6 55 13-71 5-62 (274)
223 1fuk_A Eukaryotic initiation f 85.4 2.8 9.5E-05 34.1 7.7 60 77-138 29-88 (165)
224 3nbx_X ATPase RAVA; AAA+ ATPas 85.4 0.85 2.9E-05 44.9 5.1 28 44-71 32-59 (500)
225 2zr9_A Protein RECA, recombina 85.4 2.5 8.6E-05 39.4 8.2 43 45-87 47-98 (349)
226 2oxc_A Probable ATP-dependent 85.2 1.4 4.7E-05 38.3 6.0 55 257-316 91-150 (230)
227 3b85_A Phosphate starvation-in 85.2 1 3.5E-05 38.6 5.0 35 36-70 5-39 (208)
228 2oap_1 GSPE-2, type II secreti 85.1 1.4 4.8E-05 43.5 6.5 31 39-69 245-276 (511)
229 3eaq_A Heat resistant RNA depe 85.0 3.4 0.00011 35.3 8.3 61 77-139 30-90 (212)
230 3io5_A Recombination and repai 84.9 1.3 4.5E-05 40.5 5.7 46 55-103 30-80 (333)
231 2i1q_A DNA repair and recombin 84.6 1.8 6E-05 39.9 6.7 18 54-71 99-116 (322)
232 1u94_A RECA protein, recombina 84.3 2.9 0.0001 39.1 8.1 61 26-86 17-99 (356)
233 3hjh_A Transcription-repair-co 84.2 1.5 5.2E-05 42.8 6.3 76 246-334 371-446 (483)
234 1sky_E F1-ATPase, F1-ATP synth 84.2 4.6 0.00016 39.1 9.5 25 46-70 141-168 (473)
235 2r44_A Uncharacterized protein 83.7 1.2 4E-05 41.2 5.1 24 48-71 41-64 (331)
236 3lda_A DNA repair protein RAD5 83.5 6.7 0.00023 37.2 10.3 34 53-86 178-220 (400)
237 2pl3_A Probable ATP-dependent 82.7 1.9 6.5E-05 37.4 5.8 55 257-316 96-154 (236)
238 1vec_A ATP-dependent RNA helic 82.6 2.8 9.5E-05 35.3 6.7 56 257-316 70-130 (206)
239 3a8t_A Adenylate isopentenyltr 82.4 0.78 2.7E-05 42.4 3.2 18 54-71 41-58 (339)
240 3bor_A Human initiation factor 82.3 1.8 6E-05 37.8 5.5 73 257-332 97-179 (237)
241 1e9r_A Conjugal transfer prote 82.2 0.9 3.1E-05 43.9 3.8 41 52-92 52-95 (437)
242 2jgn_A DBX, DDX3, ATP-dependen 82.1 3.4 0.00012 34.4 7.0 73 63-138 29-104 (185)
243 1um8_A ATP-dependent CLP prote 81.9 3.5 0.00012 38.8 7.8 20 53-72 72-91 (376)
244 3cmw_A Protein RECA, recombina 81.9 6 0.00021 44.8 10.5 35 53-87 732-769 (1706)
245 3hr8_A Protein RECA; alpha and 81.8 2.2 7.6E-05 39.8 6.1 43 46-88 48-99 (356)
246 2gxq_A Heat resistant RNA depe 81.7 3.2 0.00011 34.9 6.8 72 257-332 71-150 (207)
247 3iuy_A Probable ATP-dependent 81.4 2.5 8.6E-05 36.4 6.1 72 257-332 93-173 (228)
248 3e70_C DPA, signal recognition 80.7 22 0.00075 32.6 12.5 17 53-69 129-145 (328)
249 2l8b_A Protein TRAI, DNA helic 80.5 2.1 7.2E-05 35.5 4.8 53 41-93 37-95 (189)
250 2bjv_A PSP operon transcriptio 80.5 1 3.4E-05 40.1 3.2 20 52-71 28-47 (265)
251 3ly5_A ATP-dependent RNA helic 80.4 5.9 0.0002 35.0 8.3 72 257-332 125-207 (262)
252 2orw_A Thymidine kinase; TMTK, 80.4 1.3 4.6E-05 37.0 3.8 36 53-88 3-41 (184)
253 3nwn_A Kinesin-like protein KI 78.5 1.4 4.9E-05 41.1 3.6 25 47-71 97-123 (359)
254 2d7d_A Uvrabc system protein B 78.5 23 0.00077 36.1 12.9 82 77-170 444-525 (661)
255 3exa_A TRNA delta(2)-isopenten 78.4 1.4 4.8E-05 40.3 3.4 17 55-71 5-21 (322)
256 1p9r_A General secretion pathw 78.3 1.6 5.6E-05 41.7 4.1 31 39-69 151-183 (418)
257 1kgd_A CASK, peripheral plasma 77.8 1.1 3.8E-05 37.2 2.5 19 52-70 4-22 (180)
258 3foz_A TRNA delta(2)-isopenten 77.8 1.4 4.9E-05 40.1 3.3 15 56-70 13-27 (316)
259 1qde_A EIF4A, translation init 77.5 1.9 6.6E-05 37.0 4.0 71 257-332 81-161 (224)
260 1u0j_A DNA replication protein 77.2 2.2 7.4E-05 38.0 4.2 47 21-71 70-122 (267)
261 1bg2_A Kinesin; motor protein, 77.0 1.8 6.3E-05 39.8 3.9 24 48-71 71-96 (325)
262 1hv8_A Putative ATP-dependent 77.0 29 0.00099 31.7 12.5 76 77-164 237-312 (367)
263 1wrb_A DJVLGB; RNA helicase, D 76.9 4.7 0.00016 35.3 6.5 71 258-332 100-180 (253)
264 3vaa_A Shikimate kinase, SK; s 76.6 1.5 5E-05 37.1 2.9 20 52-71 24-43 (199)
265 2gza_A Type IV secretion syste 76.5 1.3 4.5E-05 41.5 2.8 21 50-70 172-192 (361)
266 3i32_A Heat resistant RNA depe 76.5 10 0.00036 34.3 8.8 61 77-139 27-87 (300)
267 2v9p_A Replication protein E1; 76.1 1.5 5.2E-05 40.0 3.0 34 52-86 125-159 (305)
268 3dc4_A Kinesin-like protein NO 76.0 1.8 6.2E-05 40.2 3.6 23 48-70 88-112 (344)
269 2qmh_A HPR kinase/phosphorylas 75.9 1.2 3.9E-05 37.8 2.0 18 53-70 34-51 (205)
270 1lvg_A Guanylate kinase, GMP k 75.5 1.4 4.8E-05 37.3 2.5 19 52-70 3-21 (198)
271 1c9k_A COBU, adenosylcobinamid 75.4 1.7 5.7E-05 36.2 2.8 34 56-90 2-35 (180)
272 3cmw_A Protein RECA, recombina 75.4 3.9 0.00013 46.2 6.5 90 53-172 1431-1523(1706)
273 2y65_A Kinesin, kinesin heavy 75.3 2.1 7.3E-05 40.0 3.9 24 48-71 78-103 (365)
274 2j37_W Signal recognition part 75.3 36 0.0012 33.3 12.7 32 55-86 103-137 (504)
275 3cmu_A Protein RECA, recombina 75.3 21 0.00071 41.2 12.3 44 45-88 369-421 (2050)
276 2vvg_A Kinesin-2; motor protei 75.3 2.2 7.4E-05 39.8 3.9 38 34-71 58-108 (350)
277 2i4i_A ATP-dependent RNA helic 75.3 13 0.00045 35.0 9.7 60 77-138 275-334 (417)
278 4a14_A Kinesin, kinesin-like p 75.0 2.2 7.6E-05 39.6 3.9 23 48-70 77-101 (344)
279 3trf_A Shikimate kinase, SK; a 75.0 1.7 5.7E-05 36.1 2.8 20 53-72 5-24 (185)
280 2h58_A Kinesin-like protein KI 74.9 2.3 7.7E-05 39.3 3.9 26 46-71 72-99 (330)
281 3eme_A Rhodanese-like domain p 74.8 2.3 7.9E-05 31.4 3.3 37 257-293 55-91 (103)
282 3b6u_A Kinesin-like protein KI 74.8 2.1 7.1E-05 40.2 3.6 24 48-71 95-120 (372)
283 3uk6_A RUVB-like 2; hexameric 74.5 1.2 4.2E-05 41.7 2.1 18 54-71 71-88 (368)
284 2nr8_A Kinesin-like protein KI 74.4 2.2 7.4E-05 39.9 3.6 25 47-71 96-122 (358)
285 1goj_A Kinesin, kinesin heavy 74.4 2.1 7.2E-05 39.9 3.5 23 49-71 75-99 (355)
286 2eyu_A Twitching motility prot 74.4 1.4 4.9E-05 39.2 2.3 18 52-69 24-41 (261)
287 1ojl_A Transcriptional regulat 74.4 1.9 6.5E-05 39.3 3.2 20 52-71 24-43 (304)
288 2zfi_A Kinesin-like protein KI 74.3 2.3 8E-05 39.8 3.9 25 47-71 82-108 (366)
289 3gbj_A KIF13B protein; kinesin 74.3 2.2 7.6E-05 39.8 3.7 25 47-71 85-111 (354)
290 2xxa_A Signal recognition part 74.3 44 0.0015 31.9 13.0 39 55-93 102-146 (433)
291 3gk5_A Uncharacterized rhodane 74.2 2.3 7.7E-05 31.9 3.1 38 257-294 54-91 (108)
292 1t5c_A CENP-E protein, centrom 74.2 2.2 7.6E-05 39.7 3.6 24 48-71 71-96 (349)
293 2lci_A Protein OR36; structura 74.2 21 0.00071 25.4 12.3 107 196-316 3-109 (134)
294 3lre_A Kinesin-like protein KI 74.1 2.2 7.5E-05 39.8 3.6 24 48-71 99-124 (355)
295 1qhx_A CPT, protein (chloramph 74.0 1.5 5.3E-05 36.0 2.4 19 53-71 3-21 (178)
296 4etp_A Kinesin-like protein KA 73.9 2.5 8.7E-05 40.1 4.1 26 46-71 132-159 (403)
297 3tau_A Guanylate kinase, GMP k 73.9 1.9 6.4E-05 36.8 2.9 20 52-71 7-26 (208)
298 1tue_A Replication protein E1; 73.7 1.5 5.2E-05 37.3 2.2 45 23-70 27-75 (212)
299 1v8k_A Kinesin-like protein KI 73.5 2.3 8E-05 40.4 3.7 24 48-71 148-173 (410)
300 3lw7_A Adenylate kinase relate 73.3 1.6 5.3E-05 35.6 2.2 18 55-72 3-20 (179)
301 2ehv_A Hypothetical protein PH 73.2 2.4 8.3E-05 36.9 3.6 34 52-85 29-66 (251)
302 2l82_A Designed protein OR32; 73.2 12 0.00043 27.4 6.6 50 261-310 5-54 (162)
303 1x88_A Kinesin-like protein KI 73.2 2.2 7.6E-05 39.9 3.4 24 48-71 82-107 (359)
304 3foj_A Uncharacterized protein 73.1 2.3 8E-05 31.2 2.9 37 257-293 55-91 (100)
305 2heh_A KIF2C protein; kinesin, 72.9 2.5 8.4E-05 39.9 3.6 24 48-71 128-153 (387)
306 2wbe_C Bipolar kinesin KRP-130 72.9 2.4 8.2E-05 39.9 3.5 23 49-71 95-119 (373)
307 2pt7_A CAG-ALFA; ATPase, prote 72.8 2.1 7.1E-05 39.6 3.1 19 51-69 169-187 (330)
308 3u06_A Protein claret segregat 72.7 2.4 8.1E-05 40.4 3.5 26 46-71 130-157 (412)
309 3crm_A TRNA delta(2)-isopenten 72.6 2.3 7.9E-05 39.0 3.3 16 55-70 7-22 (323)
310 1y63_A LMAJ004144AAA protein; 72.5 1.8 6E-05 36.1 2.4 20 52-71 9-28 (184)
311 3cob_A Kinesin heavy chain-lik 72.1 2.2 7.4E-05 40.0 3.1 26 46-71 71-98 (369)
312 1zp6_A Hypothetical protein AT 72.1 1.4 4.8E-05 36.7 1.6 20 52-71 8-27 (191)
313 4fcw_A Chaperone protein CLPB; 72.0 2.1 7E-05 39.0 2.9 18 54-71 48-65 (311)
314 3iij_A Coilin-interacting nucl 71.9 2.5 8.6E-05 34.8 3.2 20 52-71 10-29 (180)
315 2ze6_A Isopentenyl transferase 71.7 2.1 7.1E-05 37.9 2.7 15 56-70 4-18 (253)
316 2qor_A Guanylate kinase; phosp 71.5 2.1 7.3E-05 36.2 2.7 20 51-70 10-29 (204)
317 3ney_A 55 kDa erythrocyte memb 71.5 2 6.9E-05 36.3 2.5 19 52-70 18-36 (197)
318 3iwh_A Rhodanese-like domain p 71.4 3.2 0.00011 30.9 3.3 37 257-293 55-91 (103)
319 2owm_A Nckin3-434, related to 71.4 2.9 0.0001 40.2 3.9 24 48-71 130-155 (443)
320 2c9o_A RUVB-like 1; hexameric 71.0 2.1 7.2E-05 41.6 2.8 18 54-71 64-81 (456)
321 3fht_A ATP-dependent RNA helic 71.0 13 0.00044 34.9 8.5 59 78-138 266-324 (412)
322 1c4o_A DNA nucleotide excision 71.0 36 0.0012 34.6 12.1 82 77-170 438-519 (664)
323 1kag_A SKI, shikimate kinase I 70.8 2.7 9.2E-05 34.3 3.1 19 53-71 4-22 (173)
324 3tr0_A Guanylate kinase, GMP k 70.7 2.1 7E-05 36.1 2.4 19 52-70 6-24 (205)
325 2r62_A Cell division protease 70.5 1.1 3.9E-05 39.7 0.8 18 53-70 44-61 (268)
326 4ag6_A VIRB4 ATPase, type IV s 70.4 3.1 0.00011 39.4 3.9 38 52-89 34-74 (392)
327 4akg_A Glutathione S-transfera 70.4 6 0.00021 47.0 6.8 49 22-72 890-942 (2695)
328 3bfn_A Kinesin-like protein KI 70.3 2.3 8E-05 40.1 2.8 33 39-71 75-117 (388)
329 3t0q_A AGR253WP; kinesin, alph 70.1 2.4 8.3E-05 39.4 2.9 25 47-71 78-104 (349)
330 1z6g_A Guanylate kinase; struc 69.9 2.4 8.3E-05 36.4 2.7 19 52-70 22-40 (218)
331 2r2a_A Uncharacterized protein 69.7 2.5 8.6E-05 35.8 2.7 16 56-71 8-23 (199)
332 1f9v_A Kinesin-like protein KA 69.4 2.3 8E-05 39.5 2.6 22 50-71 80-103 (347)
333 1xti_A Probable ATP-dependent 69.4 16 0.00056 33.9 8.8 61 77-139 249-309 (391)
334 1ly1_A Polynucleotide kinase; 69.4 2.2 7.5E-05 35.0 2.2 17 55-71 4-20 (181)
335 3pey_A ATP-dependent RNA helic 69.3 15 0.00051 34.2 8.4 79 78-168 243-321 (395)
336 2j41_A Guanylate kinase; GMP, 69.2 2.3 7.8E-05 35.9 2.4 19 52-70 5-23 (207)
337 3d3q_A TRNA delta(2)-isopenten 69.1 3 0.0001 38.6 3.2 16 55-70 9-24 (340)
338 1wp9_A ATP-dependent RNA helic 69.1 11 0.00037 36.2 7.6 72 256-332 50-131 (494)
339 3a00_A Guanylate kinase, GMP k 68.8 2.5 8.7E-05 35.1 2.6 17 54-70 2-18 (186)
340 1s2m_A Putative ATP-dependent 68.7 16 0.00054 34.2 8.5 60 78-139 258-317 (400)
341 3kb2_A SPBC2 prophage-derived 68.5 2.2 7.7E-05 34.6 2.1 17 55-71 3-19 (173)
342 1ex7_A Guanylate kinase; subst 68.5 2.6 8.9E-05 35.3 2.5 17 54-70 2-18 (186)
343 2ffh_A Protein (FFH); SRP54, s 68.4 46 0.0016 31.7 11.5 31 55-85 100-133 (425)
344 3jvv_A Twitching mobility prot 68.4 1.9 6.5E-05 40.3 1.8 18 52-69 122-139 (356)
345 4gp7_A Metallophosphoesterase; 68.3 2.1 7.1E-05 35.2 1.9 20 52-71 8-27 (171)
346 4eun_A Thermoresistant glucoki 68.2 2.5 8.6E-05 35.6 2.4 20 52-71 28-47 (200)
347 1g8p_A Magnesium-chelatase 38 67.6 1.7 5.9E-05 40.2 1.4 19 53-71 45-63 (350)
348 1wv9_A Rhodanese homolog TT165 67.4 3.6 0.00012 29.7 2.9 35 259-293 54-88 (94)
349 1knq_A Gluconate kinase; ALFA/ 67.4 2.2 7.4E-05 35.0 1.8 19 53-71 8-26 (175)
350 1kht_A Adenylate kinase; phosp 67.2 2.6 9E-05 34.9 2.3 19 53-71 3-21 (192)
351 2ewv_A Twitching motility prot 67.1 2.4 8.4E-05 39.9 2.3 18 52-69 135-152 (372)
352 1gku_B Reverse gyrase, TOP-RG; 67.0 5.1 0.00017 43.4 5.0 75 257-333 98-182 (1054)
353 2rep_A Kinesin-like protein KI 66.9 2.7 9.3E-05 39.5 2.5 38 34-71 85-134 (376)
354 4a2p_A RIG-I, retinoic acid in 66.7 6.2 0.00021 39.0 5.4 72 258-333 55-137 (556)
355 3nwj_A ATSK2; P loop, shikimat 66.7 4 0.00014 36.0 3.5 21 52-72 47-67 (250)
356 3eph_A TRNA isopentenyltransfe 66.7 2.8 9.5E-05 39.8 2.5 16 56-71 5-20 (409)
357 1znw_A Guanylate kinase, GMP k 66.4 2.8 9.7E-05 35.5 2.4 22 49-70 16-37 (207)
358 4a2q_A RIG-I, retinoic acid in 66.3 7.8 0.00027 40.6 6.2 71 258-332 296-377 (797)
359 3tbk_A RIG-I helicase domain; 66.0 4.8 0.00016 39.8 4.4 71 258-332 52-133 (555)
360 1g41_A Heat shock protein HSLU 65.8 4.9 0.00017 38.7 4.1 19 53-71 50-68 (444)
361 2j0s_A ATP-dependent RNA helic 65.8 18 0.00062 34.0 8.3 59 78-138 276-334 (410)
362 2r8r_A Sensor protein; KDPD, P 65.7 4.8 0.00016 34.8 3.6 17 55-71 8-24 (228)
363 2fsx_A RV0390, COG0607: rhodan 65.6 8.1 0.00028 30.7 4.9 37 257-293 79-116 (148)
364 3pxg_A Negative regulator of g 65.5 3.6 0.00012 40.1 3.2 18 53-70 201-218 (468)
365 3g5j_A Putative ATP/GTP bindin 65.2 7.2 0.00025 30.1 4.4 37 259-295 90-127 (134)
366 3flh_A Uncharacterized protein 65.2 4 0.00014 31.4 2.8 38 257-294 70-109 (124)
367 2bdt_A BH3686; alpha-beta prot 65.1 5.3 0.00018 33.1 3.9 17 55-71 4-20 (189)
368 1ry6_A Internal kinesin; kines 64.9 4.6 0.00016 37.7 3.6 20 52-71 82-103 (360)
369 3cm0_A Adenylate kinase; ATP-b 64.6 2.3 7.8E-05 35.2 1.4 21 52-72 3-23 (186)
370 1rj9_A FTSY, signal recognitio 64.6 4.5 0.00015 36.8 3.5 33 53-85 102-137 (304)
371 1in4_A RUVB, holliday junction 64.4 3.7 0.00013 37.9 3.0 17 54-70 52-68 (334)
372 1s96_A Guanylate kinase, GMP k 64.4 3.3 0.00011 35.7 2.4 21 50-70 13-33 (219)
373 1zuh_A Shikimate kinase; alpha 64.1 3.9 0.00013 33.2 2.7 19 54-72 8-26 (168)
374 1gvn_B Zeta; postsegregational 63.8 4.4 0.00015 36.5 3.3 18 54-71 34-51 (287)
375 2p5t_B PEZT; postsegregational 63.7 34 0.0012 29.7 9.1 18 54-71 33-50 (253)
376 3dkp_A Probable ATP-dependent 63.4 4.6 0.00016 35.1 3.3 73 257-332 97-181 (245)
377 1qxn_A SUD, sulfide dehydrogen 62.9 6.4 0.00022 30.8 3.7 39 256-294 80-119 (137)
378 3uie_A Adenylyl-sulfate kinase 62.7 3.7 0.00013 34.6 2.4 19 52-70 24-42 (200)
379 1via_A Shikimate kinase; struc 62.7 4.6 0.00016 33.0 3.0 19 54-72 5-23 (175)
380 3fmo_B ATP-dependent RNA helic 62.6 4.1 0.00014 37.0 2.8 69 257-332 161-241 (300)
381 3t61_A Gluconokinase; PSI-biol 62.6 3.4 0.00012 34.8 2.2 18 54-71 19-36 (202)
382 1f2t_A RAD50 ABC-ATPase; DNA d 62.1 3.8 0.00013 32.8 2.2 15 55-69 25-39 (149)
383 3tb6_A Arabinose metabolism tr 61.9 81 0.0028 27.5 12.7 39 246-284 187-226 (298)
384 3vkg_A Dynein heavy chain, cyt 61.7 8.4 0.00029 46.4 5.7 64 22-87 873-946 (3245)
385 3f9v_A Minichromosome maintena 61.7 3.1 0.00011 41.9 2.0 17 55-71 329-345 (595)
386 3hix_A ALR3790 protein; rhodan 61.7 4.8 0.00016 29.9 2.6 38 257-294 51-89 (106)
387 2jtq_A Phage shock protein E; 61.6 13 0.00043 26.1 4.8 37 256-293 39-76 (85)
388 2db3_A ATP-dependent RNA helic 61.6 34 0.0012 32.6 9.4 59 78-138 300-358 (434)
389 3k1j_A LON protease, ATP-depen 61.3 7.1 0.00024 39.4 4.6 24 48-71 55-78 (604)
390 3nhv_A BH2092 protein; alpha-b 61.2 5.7 0.00019 31.5 3.1 38 257-294 71-110 (144)
391 1tf7_A KAIC; homohexamer, hexa 61.1 21 0.00072 35.2 7.9 50 52-102 280-332 (525)
392 2c95_A Adenylate kinase 1; tra 61.0 3.8 0.00013 34.1 2.2 20 52-71 8-27 (196)
393 2rhm_A Putative kinase; P-loop 60.7 3.6 0.00012 34.1 2.0 18 54-71 6-23 (193)
394 3c8u_A Fructokinase; YP_612366 60.7 3.3 0.00011 35.1 1.8 18 53-70 22-39 (208)
395 2iyv_A Shikimate kinase, SK; t 60.4 4.7 0.00016 33.2 2.6 18 54-71 3-20 (184)
396 3lnc_A Guanylate kinase, GMP k 60.4 2.9 0.0001 36.1 1.4 19 52-70 26-44 (231)
397 1nij_A Hypothetical protein YJ 60.4 6.1 0.00021 36.2 3.6 31 56-86 7-38 (318)
398 1gmx_A GLPE protein; transfera 60.3 5.6 0.00019 29.5 2.8 38 257-294 57-95 (108)
399 1q0u_A Bstdead; DEAD protein, 60.1 4 0.00014 34.9 2.2 56 257-316 71-134 (219)
400 1tev_A UMP-CMP kinase; ploop, 59.9 4.2 0.00014 33.7 2.2 18 54-71 4-21 (196)
401 3fb4_A Adenylate kinase; psych 59.4 4.2 0.00014 34.6 2.2 18 55-72 2-19 (216)
402 1zd8_A GTP:AMP phosphotransfer 59.2 6.9 0.00023 33.6 3.6 20 52-71 6-25 (227)
403 1e6c_A Shikimate kinase; phosp 59.2 4.9 0.00017 32.6 2.5 18 54-71 3-20 (173)
404 2v54_A DTMP kinase, thymidylat 58.8 4.8 0.00016 33.7 2.5 20 52-71 3-22 (204)
405 3qf7_A RAD50; ABC-ATPase, ATPa 58.8 4.2 0.00014 38.1 2.2 16 55-70 25-40 (365)
406 3dl0_A Adenylate kinase; phosp 58.7 6.6 0.00023 33.3 3.3 18 55-72 2-19 (216)
407 1aky_A Adenylate kinase; ATP:A 58.4 4.9 0.00017 34.3 2.5 19 53-71 4-22 (220)
408 1nks_A Adenylate kinase; therm 58.3 4.2 0.00014 33.6 2.0 17 55-71 3-19 (194)
409 3a4m_A L-seryl-tRNA(SEC) kinas 58.3 8.3 0.00029 34.0 4.0 18 54-71 5-22 (260)
410 1tq1_A AT5G66040, senescence-a 58.3 6.5 0.00022 30.4 2.9 38 257-294 81-119 (129)
411 1w36_B RECB, exodeoxyribonucle 58.3 11 0.00038 41.4 5.8 46 55-100 18-78 (1180)
412 1tf5_A Preprotein translocase 58.1 26 0.0009 36.5 8.0 71 256-332 122-209 (844)
413 2bwj_A Adenylate kinase 5; pho 57.9 4.8 0.00016 33.5 2.3 20 52-71 11-30 (199)
414 3pxi_A Negative regulator of g 57.8 6.5 0.00022 40.9 3.7 19 53-71 201-219 (758)
415 4akg_A Glutathione S-transfera 57.6 4.5 0.00015 48.1 2.6 21 50-70 1264-1284(2695)
416 2k0z_A Uncharacterized protein 57.6 10 0.00035 28.2 3.9 38 256-293 54-91 (110)
417 2pez_A Bifunctional 3'-phospho 57.5 4.4 0.00015 33.3 1.9 19 52-70 4-22 (179)
418 3kta_A Chromosome segregation 57.4 4.5 0.00016 33.2 2.0 16 55-70 28-43 (182)
419 2i3b_A HCR-ntpase, human cance 57.2 7 0.00024 32.7 3.1 42 157-203 104-145 (189)
420 3asz_A Uridine kinase; cytidin 57.0 4 0.00014 34.5 1.7 18 53-70 6-23 (211)
421 1cke_A CK, MSSA, protein (cyti 56.9 5.9 0.0002 33.9 2.7 18 54-71 6-23 (227)
422 1fuu_A Yeast initiation factor 56.7 13 0.00045 34.6 5.4 72 257-333 88-169 (394)
423 2cdn_A Adenylate kinase; phosp 56.7 5.5 0.00019 33.4 2.5 18 54-71 21-38 (201)
424 1ye8_A Protein THEP1, hypothet 56.7 6.3 0.00022 32.5 2.7 16 55-70 2-17 (178)
425 2yvu_A Probable adenylyl-sulfa 56.4 4.7 0.00016 33.3 1.9 19 53-71 13-31 (186)
426 1qf9_A UMP/CMP kinase, protein 56.2 4.8 0.00016 33.3 2.0 17 55-71 8-24 (194)
427 1zak_A Adenylate kinase; ATP:A 56.1 6.6 0.00023 33.5 2.9 19 53-71 5-23 (222)
428 2vli_A Antibiotic resistance p 56.1 4.6 0.00016 33.2 1.8 20 53-72 5-24 (183)
429 3tif_A Uncharacterized ABC tra 56.0 5.5 0.00019 34.7 2.4 19 52-70 30-48 (235)
430 1m7g_A Adenylylsulfate kinase; 55.8 5.4 0.00019 33.8 2.3 30 40-70 13-42 (211)
431 3sqw_A ATP-dependent RNA helic 55.7 31 0.001 34.4 8.2 78 78-167 288-368 (579)
432 2fsf_A Preprotein translocase 55.6 21 0.00072 37.1 6.9 56 256-317 113-172 (853)
433 1jjv_A Dephospho-COA kinase; P 55.5 5.3 0.00018 33.6 2.2 16 56-71 5-20 (206)
434 2pt5_A Shikimate kinase, SK; a 55.4 5.6 0.00019 32.1 2.2 17 55-71 2-18 (168)
435 3i5x_A ATP-dependent RNA helic 55.2 31 0.0011 34.1 8.2 61 77-139 338-401 (563)
436 3sr0_A Adenylate kinase; phosp 55.0 6.7 0.00023 33.3 2.7 16 56-71 3-18 (206)
437 2yjt_D ATP-dependent RNA helic 60.0 2.5 8.7E-05 34.6 0.0 58 78-137 30-87 (170)
438 4e22_A Cytidylate kinase; P-lo 54.8 7 0.00024 34.3 2.9 21 52-72 26-46 (252)
439 1ak2_A Adenylate kinase isoenz 54.8 6.4 0.00022 34.0 2.6 20 53-72 16-35 (233)
440 1ukz_A Uridylate kinase; trans 54.6 5.7 0.00019 33.3 2.2 16 55-70 17-32 (203)
441 4a74_A DNA repair and recombin 54.5 5.5 0.00019 34.0 2.1 20 52-71 24-43 (231)
442 2plr_A DTMP kinase, probable t 54.5 5.2 0.00018 33.7 1.9 18 53-70 4-21 (213)
443 2if2_A Dephospho-COA kinase; a 54.4 5.4 0.00018 33.5 2.0 17 55-71 3-19 (204)
444 4h1g_A Maltose binding protein 54.4 8.2 0.00028 39.8 3.7 25 46-70 454-480 (715)
445 3auy_A DNA double-strand break 53.7 5.3 0.00018 37.5 2.0 15 55-69 27-41 (371)
446 2jaq_A Deoxyguanosine kinase; 53.7 6 0.00021 33.0 2.2 16 55-70 2-17 (205)
447 2bbw_A Adenylate kinase 4, AK4 53.6 6.4 0.00022 34.3 2.5 19 52-70 26-44 (246)
448 3umf_A Adenylate kinase; rossm 53.5 7.3 0.00025 33.4 2.7 18 54-71 30-47 (217)
449 3d1p_A Putative thiosulfate su 53.2 8.8 0.0003 30.0 3.0 38 257-294 90-128 (139)
450 1vee_A Proline-rich protein fa 53.0 11 0.00039 29.1 3.6 37 257-293 73-110 (134)
451 2hhg_A Hypothetical protein RP 53.0 7 0.00024 30.5 2.3 38 257-294 85-123 (139)
452 1sgw_A Putative ABC transporte 52.8 7.6 0.00026 33.2 2.7 19 52-70 34-52 (214)
453 2wwf_A Thymidilate kinase, put 52.8 6.1 0.00021 33.3 2.1 19 52-70 9-27 (212)
454 2qt1_A Nicotinamide riboside k 52.8 6.3 0.00021 33.2 2.2 19 53-71 21-39 (207)
455 2cbz_A Multidrug resistance-as 52.5 6.8 0.00023 34.1 2.4 19 52-70 30-48 (237)
456 3bs4_A Uncharacterized protein 52.2 14 0.00047 32.7 4.3 53 52-105 20-75 (260)
457 1nn5_A Similar to deoxythymidy 52.1 6.5 0.00022 33.2 2.2 19 52-70 8-26 (215)
458 1nkt_A Preprotein translocase 51.8 31 0.001 36.2 7.3 55 256-316 150-208 (922)
459 2pbr_A DTMP kinase, thymidylat 51.7 6.7 0.00023 32.4 2.2 15 56-70 3-17 (195)
460 3be4_A Adenylate kinase; malar 51.6 8.1 0.00028 32.9 2.7 19 53-71 5-23 (217)
461 3eiq_A Eukaryotic initiation f 51.5 19 0.00066 33.7 5.7 60 78-139 280-339 (414)
462 3pxi_A Negative regulator of g 51.5 9.8 0.00033 39.6 3.8 16 55-70 523-538 (758)
463 1svm_A Large T antigen; AAA+ f 51.2 9 0.00031 36.0 3.1 19 52-70 168-186 (377)
464 1e4v_A Adenylate kinase; trans 51.1 6.4 0.00022 33.4 2.0 17 55-71 2-18 (214)
465 2f1r_A Molybdopterin-guanine d 50.8 5.6 0.00019 32.6 1.5 16 55-70 4-19 (171)
466 1pzn_A RAD51, DNA repair and r 50.8 10 0.00035 35.2 3.4 34 53-86 131-173 (349)
467 2ff7_A Alpha-hemolysin translo 50.6 7.5 0.00026 34.1 2.4 19 52-70 34-52 (247)
468 3qks_A DNA double-strand break 50.5 7.4 0.00025 32.9 2.2 16 55-70 25-40 (203)
469 3vkg_A Dynein heavy chain, cyt 50.5 19 0.00066 43.5 6.3 20 50-69 1301-1320(3245)
470 2xb4_A Adenylate kinase; ATP-b 50.3 7.3 0.00025 33.4 2.2 16 56-71 3-18 (223)
471 2ius_A DNA translocase FTSK; n 50.2 7 0.00024 38.4 2.3 18 52-69 166-183 (512)
472 3gfo_A Cobalt import ATP-bindi 50.2 7.6 0.00026 34.7 2.4 19 52-70 33-51 (275)
473 2pze_A Cystic fibrosis transme 50.2 7.9 0.00027 33.4 2.4 19 52-70 33-51 (229)
474 1uf9_A TT1252 protein; P-loop, 50.0 8.2 0.00028 32.1 2.5 18 55-72 10-27 (203)
475 3nh6_A ATP-binding cassette SU 50.0 7.9 0.00027 35.2 2.5 19 52-70 79-97 (306)
476 3b6e_A Interferon-induced heli 50.0 9.8 0.00034 31.9 3.0 56 257-316 81-140 (216)
477 3tlx_A Adenylate kinase 2; str 49.8 7.5 0.00026 33.9 2.2 19 53-71 29-47 (243)
478 2ghi_A Transport protein; mult 49.7 7.9 0.00027 34.2 2.4 19 52-70 45-63 (260)
479 2z0h_A DTMP kinase, thymidylat 49.6 7.6 0.00026 32.2 2.2 16 56-71 3-18 (197)
480 1urh_A 3-mercaptopyruvate sulf 49.4 23 0.00079 31.4 5.5 39 256-294 228-267 (280)
481 3b9q_A Chloroplast SRP recepto 49.3 8.1 0.00028 35.1 2.4 32 54-85 101-135 (302)
482 4g1u_C Hemin import ATP-bindin 49.0 8.3 0.00028 34.3 2.4 19 52-70 36-54 (266)
483 1r6b_X CLPA protein; AAA+, N-t 48.9 10 0.00035 39.4 3.4 17 55-71 490-506 (758)
484 2ipc_A Preprotein translocase 48.6 33 0.0011 36.1 6.9 58 254-317 116-177 (997)
485 2pcj_A ABC transporter, lipopr 48.6 8 0.00027 33.3 2.2 18 52-69 29-46 (224)
486 1htw_A HI0065; nucleotide-bind 48.5 7.6 0.00026 31.4 1.9 18 52-69 32-49 (158)
487 2z0m_A 337AA long hypothetical 48.1 21 0.00072 32.2 5.2 70 258-332 56-135 (337)
488 1g6h_A High-affinity branched- 48.1 8.7 0.0003 33.9 2.4 19 52-70 32-50 (257)
489 3ilm_A ALR3790 protein; rhodan 48.0 10 0.00035 29.8 2.6 38 257-294 55-93 (141)
490 1rz3_A Hypothetical protein rb 47.9 7.9 0.00027 32.5 2.0 16 55-70 24-39 (201)
491 2grj_A Dephospho-COA kinase; T 47.9 8.5 0.00029 32.2 2.2 39 55-96 14-52 (192)
492 1ji0_A ABC transporter; ATP bi 47.9 8.8 0.0003 33.4 2.4 19 52-70 31-49 (240)
493 3u4q_B ATP-dependent helicase/ 47.6 12 0.00041 41.1 3.9 32 259-290 343-375 (1166)
494 1mv5_A LMRA, multidrug resista 47.6 7.6 0.00026 33.9 1.9 19 52-70 27-45 (243)
495 1b0u_A Histidine permease; ABC 47.3 9.2 0.00031 33.8 2.4 19 52-70 31-49 (262)
496 1vht_A Dephospho-COA kinase; s 47.3 8.7 0.0003 32.6 2.2 17 55-71 6-22 (218)
497 2qi9_C Vitamin B12 import ATP- 47.0 9.5 0.00032 33.5 2.4 19 52-70 25-43 (249)
498 1odf_A YGR205W, hypothetical 3 46.9 8.8 0.0003 34.6 2.2 16 55-70 33-48 (290)
499 2ykg_A Probable ATP-dependent 46.8 17 0.00059 37.1 4.8 71 259-333 62-143 (696)
500 1vpl_A ABC transporter, ATP-bi 46.7 9.6 0.00033 33.6 2.4 19 52-70 40-58 (256)
No 1
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.4e-66 Score=525.28 Aligned_cols=396 Identities=41% Similarity=0.720 Sum_probs=357.0
Q ss_pred ccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcCCCeEEEEcchHHHHHHH
Q 012746 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQ 94 (457)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~~~~~lvl~P~~~L~~q~ 94 (457)
..|+++++++.+.+.|++.||+.+|+|+|.++++.+++|+|+++.+|||+|||++|++|++...+.+||++|+++|+.|+
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~P~~aL~~q~ 81 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQ 81 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHSSSEEEEECSCHHHHHHH
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHhCCCEEEECChHHHHHHH
Confidence 46899999999999999989999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccC
Q 012746 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 174 (457)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~ 174 (457)
++.++.+|+....+++................+. .+++++||+.+.++.+...+ ...++++|||||||++.+||
T Consensus 82 ~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~--~~ilv~Tpe~l~~~~~~~~l----~~~~~~~vViDEaH~i~~~g 155 (523)
T 1oyw_A 82 VDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFLEHL----AHWNPVLLAVDEAHCISQWG 155 (523)
T ss_dssp HHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTC--CSEEEECHHHHTSTTHHHHH----TTSCEEEEEESSGGGGCTTS
T ss_pred HHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC--CCEEEECHHHHhChHHHHHH----hhCCCCEEEEeCccccCcCC
Confidence 9999999999999988887776666666555554 78999999988776544333 23568999999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCCceEEEEEEeCchhhHHHHHHHHHH
Q 012746 175 HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK 254 (457)
Q Consensus 175 ~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~ 254 (457)
++|++.|..+..++..+|+.+++++|||+++....++..++++.++.++..+..++++.+.+.... .+...+.++++
T Consensus 156 ~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~---~~~~~l~~~l~ 232 (523)
T 1oyw_A 156 HDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKF---KPLDQLMRYVQ 232 (523)
T ss_dssp SCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTTEEEEEEECS---SHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCceEEEEEeCC---CHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999989999999998887653 56677888888
Q ss_pred hcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEec
Q 012746 255 ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334 (457)
Q Consensus 255 ~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~ 334 (457)
...++++||||+|++.++.+++.|++.|+.+..|||++++++|..+++.|++|+.+|||||+++++|+|+|++++|||++
T Consensus 233 ~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~ 312 (523)
T 1oyw_A 233 EQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFD 312 (523)
T ss_dssp HTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESS
T ss_pred hcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEEC
Confidence 87888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhcccCCCCccchhhhhhHHHHHhHHHHHHHhhcCcchHH
Q 012746 335 IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRK 414 (457)
Q Consensus 335 ~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~r~ 414 (457)
+|.|+++|+||+|||||.|++|.+++++++.|...++.++..... ....+....++.+|..||++..|+|+
T Consensus 313 ~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~~~~~---------~~~~~~~~~~l~~m~~~~~~~~crr~ 383 (523)
T 1oyw_A 313 IPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQ---------GQLQDIERHKLNAMGAFAEAQTCRRL 383 (523)
T ss_dssp CCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHHTSCC---------SHHHHHHHHHHHHHHHHHTCSSCHHH
T ss_pred CCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHhccCc---------HHHHHHHHHHHHHHHHHHhccccHhh
Confidence 999999999999999999999999999999999999888876111 12234556678999999999999999
Q ss_pred HHHhhhCCCcc-ccc
Q 012746 415 KILESFGEQVL-GCV 428 (457)
Q Consensus 415 ~l~~~f~~~~~-~c~ 428 (457)
.+++||++.+. +|.
T Consensus 384 ~l~~~f~e~~~~~c~ 398 (523)
T 1oyw_A 384 VLLNYFGEGRQEPCG 398 (523)
T ss_dssp HHHHHTTCCCCSCCS
T ss_pred hhHhhcCCCCCCCCC
Confidence 99999999975 553
No 2
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=9.9e-66 Score=523.90 Aligned_cols=394 Identities=39% Similarity=0.711 Sum_probs=355.2
Q ss_pred cCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcCCCeEEEEcchHHHHHHHH
Q 012746 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQV 95 (457)
Q Consensus 16 ~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~~~~~lvl~P~~~L~~q~~ 95 (457)
.+.++++++.+.+.|++.|||.+|+|+|.++++.+++|+|+++.+|||+|||++|++|++...+++||++|+++|+.|++
T Consensus 22 ~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~~g~~lVisP~~~L~~q~~ 101 (591)
T 2v1x_A 22 NKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQL 101 (591)
T ss_dssp CCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTSSSEEEEECSCHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHcCCcEEEEeCHHHHHHHHH
Confidence 34568999999999999899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCc-hhHHHHHhhhhcCCccEEEEeccccccccC
Q 012746 96 IGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP-GFMSKLKKIHSRGLLNLVAIDEAHCISSWG 174 (457)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~-~~~~~l~~~~~~~~l~~lViDEah~~~~~~ 174 (457)
+.++.+|+.+..+.+..........+..+.......+++++||+.+.+. .+...+.+......+++|||||||++.+||
T Consensus 102 ~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g 181 (591)
T 2v1x_A 102 MVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWG 181 (591)
T ss_dssp HHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTC
T ss_pred HHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccc
Confidence 9999999999999999888777766666654455689999999988764 455555666667789999999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCCceEEEEEEeCc-hhhHHHHHHHHH
Q 012746 175 HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDL-LDDAYADLCSVL 253 (457)
Q Consensus 175 ~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~l~~~l 253 (457)
++|++.|..+..+...+|+.+++++|||+++.+..++..++++..+..+..++.++++.+.+..... ...++..+.+++
T Consensus 182 ~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~~~l 261 (591)
T 2v1x_A 182 HDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLI 261 (591)
T ss_dssp TTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHHHHHH
Confidence 9999999998888899999999999999999999999999999999999999999999998887543 345677788888
Q ss_pred Hh-cCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEE
Q 012746 254 KA-NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH 332 (457)
Q Consensus 254 ~~-~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~ 332 (457)
+. ..++++||||++++.++.+++.|++.|+.+..|||+|++.+|..+++.|++|+.+|||||+++++|||+|++++||+
T Consensus 262 ~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~ 341 (591)
T 2v1x_A 262 NGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIH 341 (591)
T ss_dssp TTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEE
T ss_pred HHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEE
Confidence 65 36778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhcccCCCCccchhhhhhHHHHHhHHHHHHHhh-cCcc
Q 012746 333 FNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCE-GSGC 411 (457)
Q Consensus 333 ~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~c 411 (457)
|++|.|++.|+||+|||||.|++|.|++++.+.|...++.++... ......+.+|..||+ ...|
T Consensus 342 ~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~C 406 (591)
T 2v1x_A 342 HSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVVME---------------NVGQQKLYEMVSYCQNISKC 406 (591)
T ss_dssp SSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHTTTS---------------TTHHHHHHHHHHHHTCSSSC
T ss_pred eCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHHhhh---------------hhhHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999999988888776431 223467889999999 5799
Q ss_pred hHHHHHhhhCCCc
Q 012746 412 RRKKILESFGEQV 424 (457)
Q Consensus 412 ~r~~l~~~f~~~~ 424 (457)
+|+.+++||++.+
T Consensus 407 rr~~ll~~f~e~~ 419 (591)
T 2v1x_A 407 RRVLMAQHFDEVW 419 (591)
T ss_dssp HHHHHHHHHTCCC
T ss_pred HHHHHHHHcCCCC
Confidence 9999999999995
No 3
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=8.5e-55 Score=431.29 Aligned_cols=343 Identities=19% Similarity=0.285 Sum_probs=271.4
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC-----------CCeE
Q 012746 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PGIV 81 (457)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~-----------~~~~ 81 (457)
....|+++++++.+.+.|++ +||.+|+|+|.++++.+++|+|++++||||+|||++|++|++.. ++++
T Consensus 54 ~~~~f~~~~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~ 132 (434)
T 2db3_A 54 PIQHFTSADLRDIIIDNVNK-SGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQV 132 (434)
T ss_dssp CCCCGGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSE
T ss_pred CcCChhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccE
Confidence 34578899999999999997 79999999999999999999999999999999999999998743 5689
Q ss_pred EEEcchHHHHHHHHHHHHHcC----CceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh--hhh
Q 012746 82 LVVSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHS 155 (457)
Q Consensus 82 lvl~P~~~L~~q~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~--~~~ 155 (457)
||++||++|+.|+.+.+++++ +....+.++........ .+.. ..+++ ++||+++..+.. ...
T Consensus 133 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~---~~~Iv------v~Tp~~l~~~l~~~~~~ 200 (434)
T 2db3_A 133 VIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNE---CITR---GCHVV------IATPGRLLDFVDRTFIT 200 (434)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHH---HHTT---CCSEE------EECHHHHHHHHHTTSCC
T ss_pred EEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHH---Hhhc---CCCEE------EEChHHHHHHHHhCCcc
Confidence 999999999999999999864 34444555544433221 1111 24554 455566555533 234
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecCC---CCCce
Q 012746 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF---NRPNL 232 (457)
Q Consensus 156 ~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i 232 (457)
+.++++||+||||++.++| |++.+..+.......++.+++++|||+++......... +.++..+.... ...++
T Consensus 201 l~~~~~lVlDEah~~~~~g--f~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~--l~~~~~i~~~~~~~~~~~i 276 (434)
T 2db3_A 201 FEDTRFVVLDEADRMLDMG--FSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEF--LKNYVFVAIGIVGGACSDV 276 (434)
T ss_dssp CTTCCEEEEETHHHHTSTT--THHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTT--CSSCEEEEESSTTCCCTTE
T ss_pred cccCCeEEEccHhhhhccC--cHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHh--ccCCEEEEecccccccccc
Confidence 6678999999999999988 66665555433333467899999999999876644433 34665554332 22344
Q ss_pred EEEEEEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEE
Q 012746 233 FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 312 (457)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vL 312 (457)
...+.... ...+...|.+++.....+ +||||+++..++.+++.|.+.|+.+..+||++++.+|..+++.|++|+.+||
T Consensus 277 ~~~~~~~~-~~~k~~~l~~~l~~~~~~-~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vL 354 (434)
T 2db3_A 277 KQTIYEVN-KYAKRSKLIEILSEQADG-TIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVL 354 (434)
T ss_dssp EEEEEECC-GGGHHHHHHHHHHHCCTT-EEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEE
T ss_pred ceEEEEeC-cHHHHHHHHHHHHhCCCC-EEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEE
Confidence 44444333 346778888888876554 9999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccc-hHHHHHHHH
Q 012746 313 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFIL 374 (457)
Q Consensus 313 vaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~-~~~~~~~i~ 374 (457)
|||+++++|+|+|++++||+||+|.+..+|+||+||+||.|+.|.+++|++++ +....+.+.
T Consensus 355 vaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~ 417 (434)
T 2db3_A 355 IATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLV 417 (434)
T ss_dssp EECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHH
T ss_pred EEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999854 444444343
No 4
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=7.1e-52 Score=409.63 Aligned_cols=347 Identities=20% Similarity=0.293 Sum_probs=271.6
Q ss_pred cccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC----------------
Q 012746 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---------------- 77 (457)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~---------------- 77 (457)
...|+++++++.+.++|.. +||.+|+|+|.++++.+++|+|+++.+|||+|||++|++|++..
T Consensus 14 ~~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~ 92 (417)
T 2i4i_A 14 IESFSDVEMGEIIMGNIEL-TRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKEN 92 (417)
T ss_dssp CSSGGGSCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHC
T ss_pred cCCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccc
Confidence 4469999999999999997 69999999999999999999999999999999999999988743
Q ss_pred --------CCeEEEEcchHHHHHHHHHHHHHc----CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCch
Q 012746 78 --------PGIVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145 (457)
Q Consensus 78 --------~~~~lvl~P~~~L~~q~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~ 145 (457)
.++++|++|+++|+.|+.+.++.+ ++....+.++........ .+.. ..+++++| |+
T Consensus 93 ~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~---~~~I~v~T------p~ 160 (417)
T 2i4i_A 93 GRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIR---DLER---GCHLLVAT------PG 160 (417)
T ss_dssp BTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHH---HHTT---CCSEEEEC------HH
T ss_pred cccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHH---HhhC---CCCEEEEC------hH
Confidence 257999999999999999999874 345555555554433221 1211 24565555 44
Q ss_pred hHHHHHhh--hhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC--CccEEEEeccCChhHHHHHHHHcCCCCCe
Q 012746 146 FMSKLKKI--HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP--DVPILALTATAAPKVQKDVMESLCLQNPL 221 (457)
Q Consensus 146 ~~~~l~~~--~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~--~~~~v~lSAT~~~~~~~~~~~~~~~~~~~ 221 (457)
.+..+... ..+..+++||+||||++.+++ |++.+..+.......+ ..+++++|||+++........++. ++.
T Consensus 161 ~l~~~l~~~~~~~~~~~~iViDEah~~~~~~--~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~ 236 (417)
T 2i4i_A 161 RLVDMMERGKIGLDFCKYLVLDEADRMLDMG--FEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLD--EYI 236 (417)
T ss_dssp HHHHHHHTTSBCCTTCCEEEESSHHHHHHTT--CHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCS--SCE
T ss_pred HHHHHHHcCCcChhhCcEEEEEChhHhhccC--cHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcC--CCE
Confidence 44444322 345668999999999999887 6655544432111111 578999999999887665555443 444
Q ss_pred EEec---CCCCCceEEEEEEeCchhhHHHHHHHHHHhc-CCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHH
Q 012746 222 VLKS---SFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKAR 297 (457)
Q Consensus 222 ~~~~---~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r 297 (457)
.+.. ....+++...+.... ...+...+.++++.. .++++||||++++.++.+++.|.+.|+.+..+||++++++|
T Consensus 237 ~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r 315 (417)
T 2i4i_A 237 FLAVGRVGSTSENITQKVVWVE-ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDR 315 (417)
T ss_dssp EEEEC----CCSSEEEEEEECC-GGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHH
T ss_pred EEEeCCCCCCccCceEEEEEec-cHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHH
Confidence 3332 223445555444433 256777888888875 56789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhc
Q 012746 298 SSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (457)
Q Consensus 298 ~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~ 377 (457)
..+++.|++|+.+|||||+++++|+|+|++++||+|++|.++.+|+||+||+||.|+.|.+++++++.+...++.+.+..
T Consensus 316 ~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~ 395 (417)
T 2i4i_A 316 EEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLL 395 (417)
T ss_dssp HHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988877776654
Q ss_pred c
Q 012746 378 Q 378 (457)
Q Consensus 378 ~ 378 (457)
.
T Consensus 396 ~ 396 (417)
T 2i4i_A 396 V 396 (417)
T ss_dssp H
T ss_pred H
Confidence 3
No 5
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=3.8e-51 Score=403.47 Aligned_cols=349 Identities=19% Similarity=0.335 Sum_probs=280.0
Q ss_pred cccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc------CCCeEEEEc
Q 012746 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVS 85 (457)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~------~~~~~lvl~ 85 (457)
.....|+++++++.+.+.|.+ +||.+|+|+|.++++.+++|+++++.+|||+|||++|+++++. .+.++||++
T Consensus 34 ~~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~ 112 (410)
T 2j0s_A 34 DVTPTFDTMGLREDLLRGIYA-YGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILA 112 (410)
T ss_dssp CCCCSGGGGCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEEC
T ss_pred cCCCCHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEc
Confidence 345679999999999999997 7999999999999999999999999999999999999998874 367899999
Q ss_pred chHHHHHHHHHHHHHcC----CceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh--hhhcCCc
Q 012746 86 PLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLL 159 (457)
Q Consensus 86 P~~~L~~q~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~--~~~~~~l 159 (457)
|+++|+.|+.+.++.++ +......++......... +..+ .+++ ++||+.+..+.. ......+
T Consensus 113 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~---~~iv------v~Tp~~l~~~l~~~~~~~~~~ 180 (410)
T 2j0s_A 113 PTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRK---LDYG---QHVV------AGTPGRVFDMIRRRSLRTRAI 180 (410)
T ss_dssp SSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHH---HHHC---CSEE------EECHHHHHHHHHTTSSCCTTC
T ss_pred CcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHH---hhcC---CCEE------EcCHHHHHHHHHhCCccHhhe
Confidence 99999999999998864 344444444443332221 1111 3454 455555544433 2345668
Q ss_pred cEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEec---CCCCCceEEE
Q 012746 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYE 235 (457)
Q Consensus 160 ~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~ 235 (457)
++||+||||++.+++ |. ..+..+....+ +.+++++|||+++........ .+.++..+.. .....++...
T Consensus 181 ~~vViDEah~~~~~~--~~---~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 253 (410)
T 2j0s_A 181 KMLVLDEADEMLNKG--FK---EQIYDVYRYLPPATQVVLISATLPHEILEMTNK--FMTDPIRILVKRDELTLEGIKQF 253 (410)
T ss_dssp CEEEEETHHHHTSTT--TH---HHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGG--TCSSCEEECCCGGGCSCTTEEEE
T ss_pred eEEEEccHHHHHhhh--hH---HHHHHHHHhCccCceEEEEEcCCCHHHHHHHHH--HcCCCEEEEecCccccCCCceEE
Confidence 999999999998877 44 44455555554 789999999999876543222 2345554432 2234455555
Q ss_pred EEEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEe
Q 012746 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (457)
Q Consensus 236 ~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT 315 (457)
+........+...+.++++....+++||||++++.++.+++.|.+.|+.+..+||++++.+|..+++.|++|+.+|||||
T Consensus 254 ~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T 333 (410)
T 2j0s_A 254 FVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIST 333 (410)
T ss_dssp EEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEEC
T ss_pred EEEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEC
Confidence 55555545688888888888778899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhcccC
Q 012746 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380 (457)
Q Consensus 316 ~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 380 (457)
+++++|+|+|++++||+||+|++...|+||+||+||.|+.|.+++++++.+...++.+.+.....
T Consensus 334 ~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 398 (410)
T 2j0s_A 334 DVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQ 398 (410)
T ss_dssp GGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCC
T ss_pred ChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999888887665443
No 6
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=4.4e-52 Score=426.90 Aligned_cols=344 Identities=17% Similarity=0.233 Sum_probs=264.3
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHH--cCCCEEEEcCCCchhhHHHHHhhhcC----------CCeEEEEcchH
Q 012746 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQIPALAK----------PGIVLVVSPLI 88 (457)
Q Consensus 21 ~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~--~~~~~lv~a~TGsGKT~~~~l~~l~~----------~~~~lvl~P~~ 88 (457)
.+++++.++|++ +||.+|+|+|.++++.++ +++++++.||||+|||++|++|++.. +.++||++||+
T Consensus 27 ~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr 105 (579)
T 3sqw_A 27 VLDKEIHKAITR-MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTR 105 (579)
T ss_dssp SSCHHHHHHHHT-TTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSH
T ss_pred CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchH
Confidence 489999999987 799999999999999999 67899999999999999999998753 35899999999
Q ss_pred HHHHHHHHHHHHcC--------CceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh---hhhcC
Q 012746 89 ALMENQVIGLKEKG--------IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSRG 157 (457)
Q Consensus 89 ~L~~q~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~---~~~~~ 157 (457)
+|+.|+.+.++.+. .......++..... ....+.... .+++++||+ .+..+.. ...+.
T Consensus 106 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~l~~~~--~~IlV~Tp~------~l~~~l~~~~~~~~~ 174 (579)
T 3sqw_A 106 DLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA---AMNKMNKLR--PNIVIATPG------RLIDVLEKYSNKFFR 174 (579)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH---HHHHHHHHC--CSEEEECHH------HHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhhcccccceEEEEEECCccHHH---HHHHHhcCC--CCEEEECHH------HHHHHHHhccccccc
Confidence 99999999998742 22333333333222 122222212 456555554 4433322 23466
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-----CccEEEEeccCChhHHHHHHHHcCCCCCeEEecC-----C
Q 012746 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-----DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-----F 227 (457)
Q Consensus 158 ~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-----~ 227 (457)
.+++||+||||++.+|| |++.+..+........ +.+++++|||+++.+...+...+.......+... .
T Consensus 175 ~~~~lViDEah~l~~~g--f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~ 252 (579)
T 3sqw_A 175 FVDYKVLDEADRLLEIG--FRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPE 252 (579)
T ss_dssp TCCEEEEETHHHHTSTT--THHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCS
T ss_pred cCCEEEEEChHHhhcCC--CHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccc
Confidence 79999999999999998 8888887766655432 6789999999999876644433332222222211 1
Q ss_pred CCCceEEEEEEeCchhh----HHHHHHHHHHh-cCCccEEEEeCCcccHHHHHHHHHhC---CCceEeecCCCCHHHHHH
Q 012746 228 NRPNLFYEVRYKDLLDD----AYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAG---GISCAAYHAGLNDKARSS 299 (457)
Q Consensus 228 ~~~~i~~~~~~~~~~~~----~~~~l~~~l~~-~~~~~~iIf~~s~~~~~~l~~~L~~~---g~~~~~~~~~~~~~~r~~ 299 (457)
....+...+........ .+..+...+.. ..+.++||||+++..++.+++.|.+. ++.+..+||++++.+|..
T Consensus 253 ~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~ 332 (579)
T 3sqw_A 253 AHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTS 332 (579)
T ss_dssp SCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHH
T ss_pred cccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHH
Confidence 12233443433332222 23334444443 55678999999999999999999986 899999999999999999
Q ss_pred HHHHHhcCCceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhcc
Q 012746 300 VLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (457)
Q Consensus 300 ~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~ 378 (457)
+++.|++|+.+|||||+++++|||+|++++||++++|.++..|+||+||+||.|+.|.+++++.+.+...++.+.+...
T Consensus 333 ~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~ 411 (579)
T 3sqw_A 333 LVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKN 411 (579)
T ss_dssp HHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred HHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987654
No 7
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.3e-51 Score=423.13 Aligned_cols=344 Identities=17% Similarity=0.240 Sum_probs=263.0
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHH--cCCCEEEEcCCCchhhHHHHHhhhcC----------CCeEEEEcchH
Q 012746 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQIPALAK----------PGIVLVVSPLI 88 (457)
Q Consensus 21 ~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~--~~~~~lv~a~TGsGKT~~~~l~~l~~----------~~~~lvl~P~~ 88 (457)
.+++.+.+++.+ +||.+|+|+|.++++.++ +++++++.||||+|||++|++|++.. +.++||++||+
T Consensus 78 ~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr 156 (563)
T 3i5x_A 78 VLDKEIHKAITR-MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTR 156 (563)
T ss_dssp SSCHHHHHHHHT-TCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSH
T ss_pred CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcH
Confidence 388999999987 799999999999999999 67899999999999999999998753 34899999999
Q ss_pred HHHHHHHHHHHHc-----C---CceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh---hhhcC
Q 012746 89 ALMENQVIGLKEK-----G---IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSRG 157 (457)
Q Consensus 89 ~L~~q~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~---~~~~~ 157 (457)
+|+.|+.+.++.+ + .......++...... ...+.... .+++++||+ .+..+.. ...+.
T Consensus 157 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~--~~Iiv~Tp~------~l~~~l~~~~~~~~~ 225 (563)
T 3i5x_A 157 DLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAA---MNKMNKLR--PNIVIATPG------RLIDVLEKYSNKFFR 225 (563)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHH---HHHHHHHC--CSEEEECHH------HHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHH---HHHHhcCC--CCEEEECcH------HHHHHHHhccccccc
Confidence 9999999999873 2 223333444332221 22222212 456555554 4433322 23466
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhC-----CCccEEEEeccCChhHHHHHHHHcCCCCCeEEecC-----C
Q 012746 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-----PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-----F 227 (457)
Q Consensus 158 ~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-----~ 227 (457)
.+++||+||||++.+|| |++.+..+....... ++.|++++|||+++.+.......+.......+... .
T Consensus 226 ~~~~lViDEah~l~~~~--f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (563)
T 3i5x_A 226 FVDYKVLDEADRLLEIG--FRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPE 303 (563)
T ss_dssp TCCEEEEETHHHHTSTT--THHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCS
T ss_pred cceEEEEeCHHHHhccc--hHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCcc
Confidence 79999999999999988 888887776665432 26789999999999876644333322222222211 1
Q ss_pred CCCceEEEEEEeCchhhH----HHHHHHHHHh-cCCccEEEEeCCcccHHHHHHHHHhC---CCceEeecCCCCHHHHHH
Q 012746 228 NRPNLFYEVRYKDLLDDA----YADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAG---GISCAAYHAGLNDKARSS 299 (457)
Q Consensus 228 ~~~~i~~~~~~~~~~~~~----~~~l~~~l~~-~~~~~~iIf~~s~~~~~~l~~~L~~~---g~~~~~~~~~~~~~~r~~ 299 (457)
....+...+......... +..+...+.. ..+.++||||+++..++.+++.|.+. ++.+..+||++++.+|..
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~ 383 (563)
T 3i5x_A 304 AHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTS 383 (563)
T ss_dssp SCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHH
T ss_pred ccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHH
Confidence 122334444433322222 2333344443 56778999999999999999999986 899999999999999999
Q ss_pred HHHHHhcCCceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhcc
Q 012746 300 VLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (457)
Q Consensus 300 ~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~ 378 (457)
+++.|++|+.+|||||+++++|||+|++++||+|++|.++.+|+||+|||||.|+.|.+++++.+.+...++.+.+...
T Consensus 384 ~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~ 462 (563)
T 3i5x_A 384 LVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKN 462 (563)
T ss_dssp HHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred HHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987644
No 8
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.1e-50 Score=399.01 Aligned_cols=346 Identities=20% Similarity=0.277 Sum_probs=276.6
Q ss_pred cccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc------CCCeEEEEcch
Q 012746 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPL 87 (457)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~------~~~~~lvl~P~ 87 (457)
...|+++++++.+.+.|.+ +||.+|+|+|.++++.+++++++++.+|||+|||++|+++++. .+.+++|++|+
T Consensus 20 ~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 98 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFE-AGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPT 98 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred cCChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCC
Confidence 4579999999999999998 6999999999999999999999999999999999999998875 25689999999
Q ss_pred HHHHHHHHHHHHHc----CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh--hhhcCCccE
Q 012746 88 IALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNL 161 (457)
Q Consensus 88 ~~L~~q~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~--~~~~~~l~~ 161 (457)
++|+.|+.+.++.+ +.......+......... .. ....+++++||+ .+..+.. .....++++
T Consensus 99 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~---~~~~~Ivv~T~~------~l~~~~~~~~~~~~~~~~ 166 (400)
T 1s2m_A 99 RELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL---RL---NETVHILVGTPG------RVLDLASRKVADLSDCSL 166 (400)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHH---HT---TSCCSEEEECHH------HHHHHHHTTCSCCTTCCE
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHH---Hh---cCCCCEEEEchH------HHHHHHHhCCcccccCCE
Confidence 99999999999885 444555555544322211 11 123566666555 4333322 234566899
Q ss_pred EEEeccccccccCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEe--cCCCCCceEEEEEE
Q 012746 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK--SSFNRPNLFYEVRY 238 (457)
Q Consensus 162 lViDEah~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~ 238 (457)
||+||||++.+.+ +. ..+..+...++ ..+++++|||++......+...+. .+..+. .....+++...+..
T Consensus 167 vIiDEaH~~~~~~--~~---~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 239 (400)
T 1s2m_A 167 FIMDEADKMLSRD--FK---TIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLH--KPYEINLMEELTLKGITQYYAF 239 (400)
T ss_dssp EEEESHHHHSSHH--HH---HHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCS--SCEEESCCSSCBCTTEEEEEEE
T ss_pred EEEeCchHhhhhc--hH---HHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcC--CCeEEEeccccccCCceeEEEE
Confidence 9999999987643 33 33455555554 688999999999988776666554 333332 22333444433333
Q ss_pred eCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccc
Q 012746 239 KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (457)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 318 (457)
.. ...+...+..+++....+++||||++++.++.+++.|++.|+.+..+||+++..+|..+++.|++|+.+|||||+++
T Consensus 240 ~~-~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~ 318 (400)
T 1s2m_A 240 VE-ERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLL 318 (400)
T ss_dssp CC-GGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCS
T ss_pred ec-hhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcc
Confidence 32 34677788888888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhcccC
Q 012746 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380 (457)
Q Consensus 319 ~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 380 (457)
++|+|+|++++||++++|+++.+|+||+||+||.|+.|.+++++++.+...++.+.+.....
T Consensus 319 ~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~ 380 (400)
T 1s2m_A 319 TRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTE 380 (400)
T ss_dssp SSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred ccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999888766543
No 9
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.4e-50 Score=399.91 Aligned_cols=349 Identities=19% Similarity=0.282 Sum_probs=264.0
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc------CCCeEEEEcc
Q 012746 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSP 86 (457)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~------~~~~~lvl~P 86 (457)
....|+++++++.+.+.|++ +|+..|+++|.++++.+++|+++++.+|||+|||++|+++++. .+.+++|++|
T Consensus 38 ~~~~f~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 116 (414)
T 3eiq_A 38 IVDSFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAP 116 (414)
T ss_dssp CCCCGGGGCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred hhcCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeC
Confidence 34678889999999999998 7999999999999999999999999999999999999988875 3678999999
Q ss_pred hHHHHHHHHHHHHHcC----CceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh--hhhcCCcc
Q 012746 87 LIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLN 160 (457)
Q Consensus 87 ~~~L~~q~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~--~~~~~~l~ 160 (457)
+++|+.|+.+.++.++ .......++...... ........ .+++++| |+.+..+.. ......++
T Consensus 117 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~iiv~T------~~~l~~~l~~~~~~~~~~~ 185 (414)
T 3eiq_A 117 TRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEA--PHIIVGT------PGRVFDMLNRRYLSPKYIK 185 (414)
T ss_dssp SHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTC--CSEEEEC------HHHHHHHHHHTSSCSTTCC
T ss_pred hHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCC--CCEEEEC------HHHHHHHHHcCCcccccCc
Confidence 9999999999998853 333333333332221 22222222 4565555 444433322 23456689
Q ss_pred EEEEeccccccccCCCCHHHHHHHHHHHHhC-CCccEEEEeccCChhHHHHHHHHcCCCCCeEEecC---CCCCceEEEE
Q 012746 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---FNRPNLFYEV 236 (457)
Q Consensus 161 ~lViDEah~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~ 236 (457)
+||+||||++.+++ +. ..+..+.... ++.+++++|||+++........ .+.++..+... .....+...+
T Consensus 186 ~vViDEah~~~~~~--~~---~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 258 (414)
T 3eiq_A 186 MFVLDEADEMLSRG--FK---DQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKK--FMRDPIRILVKKEELTLEGIRQFY 258 (414)
T ss_dssp EEEECSHHHHHHTT--TH---HHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTT--TCSSCEEECCCCCCCCTTSCCEEE
T ss_pred EEEEECHHHhhccC--cH---HHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHH--HcCCCEEEEecCCccCCCCceEEE
Confidence 99999999998877 33 4445555555 4789999999999887664333 23445444322 2333444444
Q ss_pred EEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEec
Q 012746 237 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (457)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~ 316 (457)
........+...+.++++....+++||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++|+.+|||||+
T Consensus 259 ~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~ 338 (414)
T 3eiq_A 259 INVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD 338 (414)
T ss_dssp EECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECS
T ss_pred EEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC
Confidence 44455556888999999988888999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhcccC
Q 012746 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380 (457)
Q Consensus 317 ~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 380 (457)
++++|+|+|++++||+++.|.+..+|+||+||+||.|+.|.+++++++.+...++.+.+.....
T Consensus 339 ~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 402 (414)
T 3eiq_A 339 LLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTS 402 (414)
T ss_dssp SCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCC
T ss_pred ccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999999998888887665443
No 10
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.7e-49 Score=389.15 Aligned_cols=343 Identities=15% Similarity=0.239 Sum_probs=270.9
Q ss_pred ccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC------CCeEEEEcchH
Q 012746 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (457)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~------~~~~lvl~P~~ 88 (457)
..|+++++++.+.++|.+ +||.+|+|+|.++++.+++|+++++.+|||+|||++|+++++.. +.+++|++|++
T Consensus 8 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 86 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTR 86 (391)
T ss_dssp -CGGGGCCCHHHHHHHHH-HSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCH
T ss_pred CChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCH
Confidence 468999999999999998 69999999999999999999999999999999999999888753 56899999999
Q ss_pred HHHHHHHHHHHHc-----CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh--hhhcCCccE
Q 012746 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNL 161 (457)
Q Consensus 89 ~L~~q~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~--~~~~~~l~~ 161 (457)
+|+.|+.+.++.+ +.....+.++......... +..+. .+++++||+ .+..+.. ......+++
T Consensus 87 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~--~~iiv~T~~------~l~~~~~~~~~~~~~~~~ 155 (391)
T 1xti_A 87 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNC--PHIVVGTPG------RILALARNKSLNLKHIKH 155 (391)
T ss_dssp HHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSC--CSEEEECHH------HHHHHHHTTSSCCTTCSE
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCC--CCEEEECHH------HHHHHHHcCCccccccCE
Confidence 9999999999886 5666666666554433222 22222 455555554 4443322 234567899
Q ss_pred EEEeccccccccCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEecC----CCCCceEEEE
Q 012746 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS----FNRPNLFYEV 236 (457)
Q Consensus 162 lViDEah~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~ 236 (457)
||+||||++.++. .++ ..+..+....+ +.+++++|||+++.....+...+. .+..+... ....++...+
T Consensus 156 vViDEaH~~~~~~-~~~---~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 229 (391)
T 1xti_A 156 FILDECDKMLEQL-DMR---RDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQ--DPMEIFVDDETKLTLHGLQQYY 229 (391)
T ss_dssp EEECSHHHHTSSH-HHH---HHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCS--SCEEEECCCCCCCCCTTCEEEE
T ss_pred EEEeCHHHHhhcc-chH---HHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcC--CCeEEEecCccccCcccceEEE
Confidence 9999999997641 133 34445555555 789999999999987765555543 44433322 1222333333
Q ss_pred EEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEec
Q 012746 237 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (457)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~ 316 (457)
... ....+...+.++++...++++||||++++.++.+++.|.+.|+.+..+||+++..+|..+++.|++|+.+|||||+
T Consensus 230 ~~~-~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 308 (391)
T 1xti_A 230 VKL-KDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN 308 (391)
T ss_dssp EEC-CGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC
T ss_pred EEc-CchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC
Confidence 322 2356778888888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccch-HHHHHHHHHh
Q 012746 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD-RRRMEFILSK 376 (457)
Q Consensus 317 ~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~-~~~~~~i~~~ 376 (457)
++++|+|+|++++||++++|+|+..|+||+||+||.|+.|.+++++++.+ ...++.+.+.
T Consensus 309 ~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~ 369 (391)
T 1xti_A 309 LFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDR 369 (391)
T ss_dssp CCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHH
T ss_pred hhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998774 4445555544
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=6.6e-50 Score=392.47 Aligned_cols=340 Identities=17% Similarity=0.254 Sum_probs=267.5
Q ss_pred cccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEcCCCchhhHHHHHhhhcC------CCeEEEEc
Q 012746 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVS 85 (457)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~l~~l~~------~~~~lvl~ 85 (457)
...|+++++++.+.+.|.+ +|+.+|+|+|.++++.++++ +++++.+|||+|||++|+++++.. +++++|++
T Consensus 4 ~~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 82 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYA-MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLA 82 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred ccCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEEC
Confidence 4689999999999999998 79999999999999999988 899999999999999999888753 66899999
Q ss_pred chHHHHHHHHHHHHHcCC----ceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh--hhhcCCc
Q 012746 86 PLIALMENQVIGLKEKGI----AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLL 159 (457)
Q Consensus 86 P~~~L~~q~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~--~~~~~~l 159 (457)
|+++|+.|+.+.++.++. ........... .......+++++|| +.+..+.. ...+.++
T Consensus 83 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~iiv~T~------~~l~~~~~~~~~~~~~~ 146 (395)
T 3pey_A 83 PSRELARQTLEVVQEMGKFTKITSQLIVPDSFE----------KNKQINAQVIVGTP------GTVLDLMRRKLMQLQKI 146 (395)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSC----------TTSCBCCSEEEECH------HHHHHHHHTTCBCCTTC
T ss_pred CCHHHHHHHHHHHHHHhcccCeeEEEEecCchh----------hhccCCCCEEEEcH------HHHHHHHHcCCcccccC
Confidence 999999999999998542 22222222110 00111245555554 44433322 2346679
Q ss_pred cEEEEeccccccc-cCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEec---CCCCCceEE
Q 012746 160 NLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFY 234 (457)
Q Consensus 160 ~~lViDEah~~~~-~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~ 234 (457)
++||+||||++.+ ++ +. ..+..+....+ +.+++++|||+++.........+. .+..+.. ....+.+..
T Consensus 147 ~~iIiDEah~~~~~~~--~~---~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 219 (395)
T 3pey_A 147 KIFVLDEADNMLDQQG--LG---DQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVP--NANTLELQTNEVNVDAIKQ 219 (395)
T ss_dssp CEEEEETHHHHHHSTT--HH---HHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSC--SCEEECCCGGGCSCTTEEE
T ss_pred CEEEEEChhhhcCccc--cH---HHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCC--CCeEEEccccccccccccE
Confidence 9999999999976 33 33 33444455554 689999999999887665544443 3333322 233445555
Q ss_pred EEEEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEE
Q 012746 235 EVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314 (457)
Q Consensus 235 ~~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLva 314 (457)
.+........+...+..+++...++++||||+++..++.+++.|++.|+.+..+||+++..+|..+++.|++|+.+||||
T Consensus 220 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~ 299 (395)
T 3pey_A 220 LYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLIT 299 (395)
T ss_dssp EEEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEE
T ss_pred EEEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEE
Confidence 55555555678888888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccCCCCCccEEEEecCCC------CHHHHHHHhcccCCCCCCceEEEEeccch-HHHHHHHHHhc
Q 012746 315 TVAFGMGIDRKDVRLVCHFNIPK------SMEAFYQESGRAGRDQLPSKSLLYYGMDD-RRRMEFILSKN 377 (457)
Q Consensus 315 T~~~~~Gldip~v~~Vi~~~~p~------s~~~~~Qr~GRagR~g~~g~~~~~~~~~~-~~~~~~i~~~~ 377 (457)
|+++++|+|+|++++||+||+|+ |+.+|+||+||+||.|+.|.+++++...+ ...++.+.+..
T Consensus 300 T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~ 369 (395)
T 3pey_A 300 TNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYF 369 (395)
T ss_dssp CGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHT
T ss_pred CChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHh
Confidence 99999999999999999999999 99999999999999999999999998765 44444444443
No 12
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.1e-49 Score=393.25 Aligned_cols=344 Identities=19% Similarity=0.261 Sum_probs=270.8
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEcCCCchhhHHHHHhhhcC------CCeEEEE
Q 012746 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------PGIVLVV 84 (457)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~l~~l~~------~~~~lvl 84 (457)
....|+++++++.+.+.|.+ +||..|+|+|.++++.++++ +++++.+|||+|||++|++|++.. +++++|+
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil 101 (412)
T 3fht_A 23 SVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL 101 (412)
T ss_dssp CSSCTGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred ccCCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEE
Confidence 45679999999999999998 79999999999999999987 899999999999999999888743 4589999
Q ss_pred cchHHHHHHHHHHHHHcCC-----ceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh---hhhc
Q 012746 85 SPLIALMENQVIGLKEKGI-----AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSR 156 (457)
Q Consensus 85 ~P~~~L~~q~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~---~~~~ 156 (457)
+|+++|+.|+.+.++.++. ............ .......+++ ++||+.+..+.. ....
T Consensus 102 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~iv------v~T~~~l~~~~~~~~~~~~ 166 (412)
T 3fht_A 102 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE---------RGQKISEQIV------IGTPGTVLDWCSKLKFIDP 166 (412)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCC---------TTCCCCCSEE------EECHHHHHHHHTTSCSSCG
T ss_pred CCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchh---------hhhcCCCCEE------EECchHHHHHHHhcCCcCh
Confidence 9999999999999888532 222222221100 0011123454 455555544432 2334
Q ss_pred CCccEEEEeccccccc-cCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEecC---CCCCc
Q 012746 157 GLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---FNRPN 231 (457)
Q Consensus 157 ~~l~~lViDEah~~~~-~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 231 (457)
.++++||+||||++.+ ++ +... +..+....+ +.+++++|||+++.........+ .++..+... .....
T Consensus 167 ~~~~~iViDEah~~~~~~~--~~~~---~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 239 (412)
T 3fht_A 167 KKIKVFVLDEADVMIATQG--HQDQ---SIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVV--PDPNVIKLKREEETLDT 239 (412)
T ss_dssp GGCCEEEEETHHHHHSTTT--THHH---HHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHS--SSCEEECCCGGGSSCTT
T ss_pred hhCcEEEEeCHHHHhhcCC--cHHH---HHHHHhhCCCCceEEEEEeecCHHHHHHHHHhc--CCCeEEeeccccccccC
Confidence 5689999999999976 34 4433 334444444 68999999999998776555544 344444332 23445
Q ss_pred eEEEEEEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceE
Q 012746 232 LFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (457)
Q Consensus 232 i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 311 (457)
+...+........+...+..++....++++||||+++..++.+++.|.+.|+.+..+||+++..+|..+++.|++|+.+|
T Consensus 240 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 319 (412)
T 3fht_A 240 IKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKV 319 (412)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSE
T ss_pred ceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcE
Confidence 55555556666778888999998888889999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccCCCCCccEEEEecCC------CCHHHHHHHhcccCCCCCCceEEEEeccch-HHHHHHHHHhccc
Q 012746 312 VVATVAFGMGIDRKDVRLVCHFNIP------KSMEAFYQESGRAGRDQLPSKSLLYYGMDD-RRRMEFILSKNQS 379 (457)
Q Consensus 312 LvaT~~~~~Gldip~v~~Vi~~~~p------~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~-~~~~~~i~~~~~~ 379 (457)
||||+++++|+|+|++++||+|++| .+..+|+||+||+||.|+.|.+++++++.+ ...++.+.+....
T Consensus 320 lv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~ 394 (412)
T 3fht_A 320 LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNK 394 (412)
T ss_dssp EEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTC
T ss_pred EEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCC
Confidence 9999999999999999999999999 578999999999999999999999998765 6667766665543
No 13
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.6e-49 Score=381.98 Aligned_cols=341 Identities=19% Similarity=0.293 Sum_probs=270.9
Q ss_pred ccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC-CCEEEEcCCCchhhHHHHHhhhcC-----CCeEEEEcchH
Q 012746 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLI 88 (457)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~l~~l~~-----~~~~lvl~P~~ 88 (457)
..|+++++++.+.+.|++ +||.+|+|+|.++++.++++ +++++.+|||+|||++|+++++.. +.+++|++|++
T Consensus 6 ~~f~~~~l~~~~~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~ 84 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRN-KGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTR 84 (367)
T ss_dssp CCGGGSSCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCH
T ss_pred CchhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCH
Confidence 458899999999999998 69999999999999999988 699999999999999999887653 67899999999
Q ss_pred HHHHHHHHHHHHc----CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh--hhhcCCccEE
Q 012746 89 ALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNLV 162 (457)
Q Consensus 89 ~L~~q~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~--~~~~~~l~~l 162 (457)
+|+.|+.+.++.+ +.......++......... .. ..+++++||+ .+..... .....+++++
T Consensus 85 ~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~----~~~iiv~T~~------~l~~~~~~~~~~~~~~~~i 151 (367)
T 1hv8_A 85 ELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKA---LK----NANIVVGTPG------RILDHINRGTLNLKNVKYF 151 (367)
T ss_dssp HHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHH---HH----TCSEEEECHH------HHHHHHHTTCSCTTSCCEE
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhh---cC----CCCEEEecHH------HHHHHHHcCCcccccCCEE
Confidence 9999999999884 3344444444443322111 11 1556555554 4333322 2345678999
Q ss_pred EEeccccccccCCCCHHHHHHHHHHHHhC-CCccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCCceEEEEEEeCc
Q 012746 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDL 241 (457)
Q Consensus 163 ViDEah~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 241 (457)
|+||||.+.+++ +. ..+..+.... ++.+++++|||+++.....+...++ ++..+..... .++...+... .
T Consensus 152 IiDEah~~~~~~--~~---~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~-~ 222 (367)
T 1hv8_A 152 ILDEADEMLNMG--FI---KDVEKILNACNKDKRILLFSATMPREILNLAKKYMG--DYSFIKAKIN-ANIEQSYVEV-N 222 (367)
T ss_dssp EEETHHHHHTTT--TH---HHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCC--SEEEEECCSS-SSSEEEEEEC-C
T ss_pred EEeCchHhhhhc--hH---HHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcC--CCeEEEecCC-CCceEEEEEe-C
Confidence 999999998877 44 3445555555 4789999999999987776655553 3333333222 2333333322 2
Q ss_pred hhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEecccccc
Q 012746 242 LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (457)
Q Consensus 242 ~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 321 (457)
...+...+.++++ ..+.++||||++++.++.+++.|++.|+.+..+||+++..+|..+++.|++|+.+|||||+++++|
T Consensus 223 ~~~~~~~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~G 301 (367)
T 1hv8_A 223 ENERFEALCRLLK-NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRG 301 (367)
T ss_dssp GGGHHHHHHHHHC-STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHH
T ss_pred hHHHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcC
Confidence 3567778888877 456789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhccc
Q 012746 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (457)
Q Consensus 322 ldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 379 (457)
+|+|++++||++++|+|+.+|+||+||+||.|++|.+++++++.+...++.+.+....
T Consensus 302 id~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 359 (367)
T 1hv8_A 302 IDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKL 359 (367)
T ss_dssp CCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTC
T ss_pred CCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999998888776544
No 14
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.4e-50 Score=397.36 Aligned_cols=345 Identities=19% Similarity=0.251 Sum_probs=143.0
Q ss_pred cccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc------CCCeEEEEc
Q 012746 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVS 85 (457)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~------~~~~~lvl~ 85 (457)
.....|+++++++.+.+.|.. +|+.+|+|+|.++++.+++|+++++.+|||+|||++|++|++. .+++++|++
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~ 96 (394)
T 1fuu_A 18 KVVYKFDDMELDENLLRGVFG-YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLA 96 (394)
T ss_dssp CCCCSSGGGCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred cccCChhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEc
Confidence 445679999999999999998 7999999999999999999999999999999999999988875 366999999
Q ss_pred chHHHHHHHHHHHHHc----CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh--hhhcCCc
Q 012746 86 PLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLL 159 (457)
Q Consensus 86 P~~~L~~q~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~--~~~~~~l 159 (457)
|+++|+.|+.+.+.++ +.......+............ ..+++++||+ .+..... .....++
T Consensus 97 P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------~~~i~v~T~~------~l~~~~~~~~~~~~~~ 163 (394)
T 1fuu_A 97 PTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-------DAQIVVGTPG------RVFDNIQRRRFRTDKI 163 (394)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-------HCSEEEECHH------HHHHHHHTTSSCCTTC
T ss_pred CCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-------CCCEEEECHH------HHHHHHHhCCcchhhC
Confidence 9999999999998874 345555555554433322221 1456655555 4333322 2335568
Q ss_pred cEEEEeccccccccCCCCHHHHHHHHHHHHhC-CCccEEEEeccCChhHHHHHHHHcCCCCCeEEecC---CCCCceEEE
Q 012746 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---FNRPNLFYE 235 (457)
Q Consensus 160 ~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~ 235 (457)
++||+||||++.+++ ++.. +..+.... ++.+++++|||+++.........+. .+..+... ...+++...
T Consensus 164 ~~vIiDEah~~~~~~--~~~~---~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 236 (394)
T 1fuu_A 164 KMFILDEADEMLSSG--FKEQ---IYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMR--NPVRILVKKDELTLEGIKQF 236 (394)
T ss_dssp CEEEEETHHHHHHTT--CHHH---HHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCC--SCEEEEECC-----------
T ss_pred cEEEEEChHHhhCCC--cHHH---HHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcC--CCeEEEecCccccCCCceEE
Confidence 999999999998876 5544 34444444 4788999999999987665555543 34433222 112222222
Q ss_pred EEEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEe
Q 012746 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (457)
Q Consensus 236 ~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT 315 (457)
+........+...+.++++....+++||||++++.++.+++.|++.|+.+..+||+++..+|..+++.|++|+.+|||||
T Consensus 237 ~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T 316 (394)
T 1fuu_A 237 YVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST 316 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEEC
Confidence 22222223355666777776677899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhc
Q 012746 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (457)
Q Consensus 316 ~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~ 377 (457)
+++++|+|+|++++||++++|.++.+|+||+||+||.|+.|.+++++++.+...++.+.+..
T Consensus 317 ~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~ 378 (394)
T 1fuu_A 317 DLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFY 378 (394)
T ss_dssp --------------------------------------------------------------
T ss_pred ChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999888777766543
No 15
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.5e-48 Score=374.55 Aligned_cols=325 Identities=18% Similarity=0.250 Sum_probs=255.9
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcCCCeEEEEcchHHHHHHHHHHHHHc
Q 012746 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK 101 (457)
Q Consensus 22 l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~~~~~lvl~P~~~L~~q~~~~~~~~ 101 (457)
+++.+.+.|++ +||.+|+|+|.++++.+++++++++.+|||+|||++|+++++..+.+++|++|+++|+.|+.+.++++
T Consensus 1 l~~~i~~~l~~-~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~ 79 (337)
T 2z0m_A 1 MNEKIEQAIRE-MGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELGMKSLVVTPTRELTRQVASHIRDI 79 (337)
T ss_dssp CCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHHHHHHH
Confidence 45788999997 79999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred C----CceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh--hhhcCCccEEEEeccccccccCC
Q 012746 102 G----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNLVAIDEAHCISSWGH 175 (457)
Q Consensus 102 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~--~~~~~~l~~lViDEah~~~~~~~ 175 (457)
+ .....+.++........ ... ..+++++||+ .+..+.. ......+++||+||||++.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~i~v~T~~------~l~~~~~~~~~~~~~~~~iViDEah~~~~~~- 145 (337)
T 2z0m_A 80 GRYMDTKVAEVYGGMPYKAQIN---RVR----NADIVVATPG------RLLDLWSKGVIDLSSFEIVIIDEADLMFEMG- 145 (337)
T ss_dssp TTTSCCCEEEECTTSCHHHHHH---HHT----TCSEEEECHH------HHHHHHHTTSCCGGGCSEEEEESHHHHHHTT-
T ss_pred hhhcCCcEEEEECCcchHHHHh---hcC----CCCEEEECHH------HHHHHHHcCCcchhhCcEEEEEChHHhhccc-
Confidence 3 44555555544333221 111 1456555555 4333322 2234568999999999999887
Q ss_pred CCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCCceEEEEEEeCchhhHHHHHHHHHH
Q 012746 176 DFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK 254 (457)
Q Consensus 176 ~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~ 254 (457)
+. ..+..+....+ ..+++++|||+++.....+...+. ++..+......+++...+...... .......++
T Consensus 146 -~~---~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 216 (337)
T 2z0m_A 146 -FI---DDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFIT--NYEEIEACIGLANVEHKFVHVKDD---WRSKVQALR 216 (337)
T ss_dssp -CH---HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSC--SCEEEECSGGGGGEEEEEEECSSS---SHHHHHHHH
T ss_pred -cH---HHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcC--CceeeecccccCCceEEEEEeChH---HHHHHHHHH
Confidence 43 44455555565 567788999999988776666553 444454444455555554443321 122335666
Q ss_pred hcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEec
Q 012746 255 ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334 (457)
Q Consensus 255 ~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~ 334 (457)
...++++||||++++.++.+++.|. .+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++
T Consensus 217 ~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~ 292 (337)
T 2z0m_A 217 ENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFD 292 (337)
T ss_dssp TCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESS
T ss_pred hCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEec
Confidence 6778899999999999999988885 588999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHH
Q 012746 335 IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (457)
Q Consensus 335 ~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~ 375 (457)
+|+|+.+|+||+||+||.|+.|.+++|+. .+...++.+.+
T Consensus 293 ~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~ 332 (337)
T 2z0m_A 293 APQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKK 332 (337)
T ss_dssp CCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC-
T ss_pred CCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHH
Confidence 99999999999999999999999999999 77666665543
No 16
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=9.4e-50 Score=401.10 Aligned_cols=342 Identities=20% Similarity=0.268 Sum_probs=135.6
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEcCCCchhhHHHHHhhhcC------CCeEEEE
Q 012746 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------PGIVLVV 84 (457)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~l~~l~~------~~~~lvl 84 (457)
....|+++++++.+.+.|.+ +||..|+|+|.++++.++.+ +++++.||||+|||++|++|++.. .+++||+
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~-~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil 168 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL 168 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEE
T ss_pred CcCCHHHcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEE
Confidence 34578999999999999998 79999999999999999987 899999999999999999998754 3489999
Q ss_pred cchHHHHHHHHHHHHHcC-----CceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh---hhhc
Q 012746 85 SPLIALMENQVIGLKEKG-----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSR 156 (457)
Q Consensus 85 ~P~~~L~~q~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~---~~~~ 156 (457)
+|+++|+.|+.+.++.++ ........+.... .......++ +++||+.+..+.. ...+
T Consensus 169 ~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~I------vv~Tp~~l~~~l~~~~~~~~ 233 (479)
T 3fmp_B 169 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE---------RGQKISEQI------VIGTPGTVLDWCSKLKFIDP 233 (479)
T ss_dssp CSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCC---------TTCCCCCSE------EEECHHHHHHHHTTSCCCCG
T ss_pred eChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccc---------ccccCCCCE------EEECchHHHHHHHhcCCcCc
Confidence 999999999988887742 2222222221100 000112344 4555565555432 3344
Q ss_pred CCccEEEEeccccccc-cCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCC---CCc
Q 012746 157 GLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPN 231 (457)
Q Consensus 157 ~~l~~lViDEah~~~~-~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 231 (457)
.++++||+||||++.+ ++ +. ..+..+....+ +.+++++|||++..........+ .++..+..... ...
T Consensus 234 ~~~~~iViDEah~~~~~~~--~~---~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~ 306 (479)
T 3fmp_B 234 KKIKVFVLDEADVMIATQG--HQ---DQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVV--PDPNVIKLKREEETLDT 306 (479)
T ss_dssp GGCCEEEECCHHHHHTSTT--HH---HHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHS--SSEEEEEEC--------
T ss_pred ccCCEEEEECHHHHhhcCC--cH---HHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHc--CCCeEEeccccccCcCC
Confidence 6799999999999976 33 33 33344555554 78999999999998766444443 44444433221 122
Q ss_pred eEEEEEEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceE
Q 012746 232 LFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (457)
Q Consensus 232 i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 311 (457)
+...+........+...+..++.....+++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+|
T Consensus 307 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~i 386 (479)
T 3fmp_B 307 IKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKV 386 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcE
Confidence 22222222223456677777777777789999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccCCCCCccEEEEecCCC------CHHHHHHHhcccCCCCCCceEEEEeccch-HHHHHHHHHhc
Q 012746 312 VVATVAFGMGIDRKDVRLVCHFNIPK------SMEAFYQESGRAGRDQLPSKSLLYYGMDD-RRRMEFILSKN 377 (457)
Q Consensus 312 LvaT~~~~~Gldip~v~~Vi~~~~p~------s~~~~~Qr~GRagR~g~~g~~~~~~~~~~-~~~~~~i~~~~ 377 (457)
||||+++++|+|+|++++||+||+|. +..+|+||+|||||.|+.|.+++++++.+ ...++.+.+..
T Consensus 387 Lv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~ 459 (479)
T 3fmp_B 387 LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHF 459 (479)
T ss_dssp -------------------------------------------------------------------------
T ss_pred EEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHh
Confidence 99999999999999999999999994 67899999999999999999999998765 55555554443
No 17
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=2.9e-47 Score=376.06 Aligned_cols=331 Identities=16% Similarity=0.212 Sum_probs=248.7
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc---CCCeEEEEcchHHHHHHHHHHHH
Q 012746 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLK 99 (457)
Q Consensus 23 ~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~---~~~~~lvl~P~~~L~~q~~~~~~ 99 (457)
-+++.+.+++.+|+ +|+|+|.++++.+++|+|+++.+|||+|||++|+++++. .+++++|++|+++|+.|+.+.++
T Consensus 7 ~~~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 85 (414)
T 3oiy_A 7 YEDFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQ 85 (414)
T ss_dssp HHHHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHH
Confidence 35677888888898 599999999999999999999999999999999988776 68899999999999999999999
Q ss_pred Hc---CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccC--
Q 012746 100 EK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG-- 174 (457)
Q Consensus 100 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~-- 174 (457)
.+ ++....+.++............+..+. .+++++ ||+.+..+........+++||+||||++.+|+
T Consensus 86 ~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~--~~Iiv~------Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~ 157 (414)
T 3oiy_A 86 KLADEKVKIFGFYSSMKKEEKEKFEKSFEEDD--YHILVF------STQFVSKNREKLSQKRFDFVFVDDVDAVLKASRN 157 (414)
T ss_dssp HHCCSSCCEEECCTTSCHHHHHHHHHHHHHTC--CSEEEE------EHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHH
T ss_pred HHccCCceEEEEECCCChhhHHHHHHHhhcCC--CCEEEE------CHHHHHHHHHHhccccccEEEEeChHhhhhccch
Confidence 94 667777888877755555555555544 455554 55555444444566679999999999987654
Q ss_pred -------CCCHHH-HHHHHHHHH------h---CCCccEEEEecc-CChhHHHHHHH-HcCCCCCeEEecCCCCCceEEE
Q 012746 175 -------HDFRPS-YRKLSSLRN------Y---LPDVPILALTAT-AAPKVQKDVME-SLCLQNPLVLKSSFNRPNLFYE 235 (457)
Q Consensus 175 -------~~~~~~-~~~l~~~~~------~---~~~~~~v~lSAT-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~ 235 (457)
..|.+. +..+..... . .++.+++++||| .+......+.. .+..... .......++...
T Consensus 158 ~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~ 234 (414)
T 3oiy_A 158 IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVG---RLVSVARNITHV 234 (414)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSS---CCCCCCCSEEEE
T ss_pred hhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcC---ccccccccchhe
Confidence 346655 344433332 1 157899999999 44443322322 2221111 111223344444
Q ss_pred EEEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceE-eecCCCCHHHHHHHHHHHhcCCceEEEE
Q 012746 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCA-AYHAGLNDKARSSVLDDWISSRKQVVVA 314 (457)
Q Consensus 236 ~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~-~~~~~~~~~~r~~~~~~f~~g~~~vLva 314 (457)
+... ++...+.++++.. ++++||||+++..++.+++.|+..|+.+. .+||+ +|. ++.|++|+.+||||
T Consensus 235 ~~~~----~~~~~l~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLva 303 (414)
T 3oiy_A 235 RISS----RSKEKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIG 303 (414)
T ss_dssp EESS----CCHHHHHHHHHHH-CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEE
T ss_pred eecc----CHHHHHHHHHHHc-CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEE
Confidence 3333 2445566666663 47899999999999999999999999998 99994 344 99999999999999
Q ss_pred ----eccccccCCCCC-ccEEEEecCC--CCHHHHHHHhcccCCCC----CCceEEEEeccchHHHHHHHHHhcc
Q 012746 315 ----TVAFGMGIDRKD-VRLVCHFNIP--KSMEAFYQESGRAGRDQ----LPSKSLLYYGMDDRRRMEFILSKNQ 378 (457)
Q Consensus 315 ----T~~~~~Gldip~-v~~Vi~~~~p--~s~~~~~Qr~GRagR~g----~~g~~~~~~~~~~~~~~~~i~~~~~ 378 (457)
|+++++|+|+|+ +++||+||+| .++.+|+||+||+||.| +.|.+++++ .+...++.+.+...
T Consensus 304 t~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 304 VQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp ECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred ecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 999999999999 9999999999 99999999999999987 478999888 55555555554443
No 18
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.6e-48 Score=390.20 Aligned_cols=345 Identities=18% Similarity=0.237 Sum_probs=219.5
Q ss_pred ccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEcCCCchhhHHHHHhhhcC------CCeEEEEcc
Q 012746 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSP 86 (457)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~l~~l~~------~~~~lvl~P 86 (457)
..+.+.++++.+.+.+.+ .|+..|+++|.++++.++++ +++++.+|||+|||++|+++++.. ++++||++|
T Consensus 119 ~~~~~~~l~~~~~~~l~~-~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P 197 (508)
T 3fho_A 119 XXXXXXXXXXXXXXXXXX-XXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAP 197 (508)
T ss_dssp ---------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECS
T ss_pred cccccccccccccccccc-ccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEEC
Confidence 345667788889999987 59999999999999999998 899999999999999999887753 458999999
Q ss_pred hHHHHHHHHHHHHHcCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh--hhhcCCccEEEE
Q 012746 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNLVAI 164 (457)
Q Consensus 87 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~--~~~~~~l~~lVi 164 (457)
+++|+.|+.++++.++................ .......+++++||+ .+..... ......+++||+
T Consensus 198 ~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Ivv~T~~------~l~~~l~~~~~~~~~~~lIIi 265 (508)
T 3fho_A 198 SRELARQIMDVVTEMGKYTEVKTAFGIKDSVP------KGAKIDAQIVIGTPG------TVMDLMKRRQLDARDIKVFVL 265 (508)
T ss_dssp CHHHHHHHHHHHHHHSTTSSCCEEC----------------CCCCSEEEECHH------HHHHHHHTTCSCCTTCCEEEE
T ss_pred cHHHHHHHHHHHHHhCCccCeeEEEEeCCccc------ccccCCCCEEEECHH------HHHHHHHcCCccccCCCEEEE
Confidence 99999999999998643221111111110000 001113556555554 3333322 234567999999
Q ss_pred eccccccc-cCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEecC---CCCCceEEEEEEe
Q 012746 165 DEAHCISS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---FNRPNLFYEVRYK 239 (457)
Q Consensus 165 DEah~~~~-~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~ 239 (457)
||||++.+ ++ +.. .+..+...++ +.+++++|||+++.......... .++..+... ...+.+...+...
T Consensus 266 DEaH~~~~~~~--~~~---~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~ 338 (508)
T 3fho_A 266 DEADNMLDQQG--LGD---QSMRIKHLLPRNTQIVLFSATFSERVEKYAERFA--PNANEIRLKTEELSVEGIKQLYMDC 338 (508)
T ss_dssp CCHHHHTTC----CHH---HHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHS--TTCEEECCCCCC----CCCCEEEEC
T ss_pred echhhhcccCC--cHH---HHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhc--CCCeEEEeccccCCcccceEEEEEC
Confidence 99999976 33 443 3444555554 78999999999987765444433 233333221 2223333333333
Q ss_pred CchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEecccc
Q 012746 240 DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319 (457)
Q Consensus 240 ~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 319 (457)
.....+...+..+++...++++||||+++..++.++..|.+.++.+..+||+++..+|..+++.|++|+.+|||||++++
T Consensus 339 ~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~ 418 (508)
T 3fho_A 339 QSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIA 418 (508)
T ss_dssp --CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC---
T ss_pred CchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhh
Confidence 34456777888888877888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEecCC------CCHHHHHHHhcccCCCCCCceEEEEecc-chHHHHHHHHHhccc
Q 012746 320 MGIDRKDVRLVCHFNIP------KSMEAFYQESGRAGRDQLPSKSLLYYGM-DDRRRMEFILSKNQS 379 (457)
Q Consensus 320 ~Gldip~v~~Vi~~~~p------~s~~~~~Qr~GRagR~g~~g~~~~~~~~-~~~~~~~~i~~~~~~ 379 (457)
+|+|+|++++||+++.| .|+..|+||+||+||.|+.|.+++++.+ .+...++.+.+....
T Consensus 419 ~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~ 485 (508)
T 3fho_A 419 RGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQR 485 (508)
T ss_dssp --CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCC
T ss_pred cCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCC
Confidence 99999999999999999 7899999999999999999999999984 455556666555443
No 19
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=3e-45 Score=385.38 Aligned_cols=390 Identities=17% Similarity=0.179 Sum_probs=232.8
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC-----C----CeEEEEcchHHHHHHH-HHHHHHcC---Cc
Q 012746 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----P----GIVLVVSPLIALMENQ-VIGLKEKG---IA 104 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~-----~----~~~lvl~P~~~L~~q~-~~~~~~~~---~~ 104 (457)
+|+|+|.++++.+++|+++++.+|||+|||++|+++++.. . +++||++|+++|+.|+ .++++.++ ..
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~ 86 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYR 86 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTTSC
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcCce
Confidence 5999999999999999999999999999999999998752 2 8899999999999999 99999864 45
Q ss_pred eeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHH--HHhhhhcCCccEEEEeccccccccCCCCHHHHH
Q 012746 105 GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK--LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYR 182 (457)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~--l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~ 182 (457)
...+.+............ ...+++++||+.+........ .........+++|||||||++...+ .+.....
T Consensus 87 v~~~~g~~~~~~~~~~~~------~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~-~~~~i~~ 159 (699)
T 4gl2_A 87 VIGLSGDTQLKISFPEVV------KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEA-VYNNIMR 159 (699)
T ss_dssp EEEEC----CCCCHHHHH------HSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTB-SSCSHHH
T ss_pred EEEEeCCcchhhHHHhhh------cCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccc-hHHHHHH
Confidence 555554432211111111 125676666664432110000 1112345568999999999985422 2333322
Q ss_pred HHHH--HHHhC---------CCccEEEEeccCChh-------HHH---HHHHHcCCCCCeE-------EecCCCCCceEE
Q 012746 183 KLSS--LRNYL---------PDVPILALTATAAPK-------VQK---DVMESLCLQNPLV-------LKSSFNRPNLFY 234 (457)
Q Consensus 183 ~l~~--~~~~~---------~~~~~v~lSAT~~~~-------~~~---~~~~~~~~~~~~~-------~~~~~~~~~i~~ 234 (457)
.+.. +.... +..+++++|||+... ... .+...+....... +.....++...+
T Consensus 160 ~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~ 239 (699)
T 4gl2_A 160 HYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKF 239 (699)
T ss_dssp HHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEE
T ss_pred HHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEE
Confidence 2111 11111 667899999999973 222 2233333210000 000112222222
Q ss_pred EEEEeCc-------------------------------------------------------------------------
Q 012746 235 EVRYKDL------------------------------------------------------------------------- 241 (457)
Q Consensus 235 ~~~~~~~------------------------------------------------------------------------- 241 (457)
.......
T Consensus 240 ~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 319 (699)
T 4gl2_A 240 AIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRM 319 (699)
T ss_dssp EEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCH
T ss_pred EEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111000
Q ss_pred -----------------------------------------------------------hhhHHHHHHHH----HHhcC-
Q 012746 242 -----------------------------------------------------------LDDAYADLCSV----LKANG- 257 (457)
Q Consensus 242 -----------------------------------------------------------~~~~~~~l~~~----l~~~~- 257 (457)
...++..|.++ +...+
T Consensus 320 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~ 399 (699)
T 4gl2_A 320 IDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEE 399 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 00011111222 22223
Q ss_pred CccEEEEeCCcccHHHHHHHHHhC------CCceEeecCC--------CCHHHHHHHHHHHhcCCceEEEEeccccccCC
Q 012746 258 DTCAIVYCLERTTCDELSAYLSAG------GISCAAYHAG--------LNDKARSSVLDDWISSRKQVVVATVAFGMGID 323 (457)
Q Consensus 258 ~~~~iIf~~s~~~~~~l~~~L~~~------g~~~~~~~~~--------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gld 323 (457)
++++||||+++..++.+++.|+.. |+.+..+||+ |++.+|..+++.|++|+.+|||||+++++|||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 789999999999999999999987 8999999999 99999999999999999999999999999999
Q ss_pred CCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHH--------HHHHHhcccCCCCccchhhhhhHHH
Q 012746 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM--------EFILSKNQSKNSQSFSTRERSSKKS 395 (457)
Q Consensus 324 ip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~~ 395 (457)
+|++++||+||+|+|+..|+||+|||||.| +.++++....+.... +.+........ ...+......+..
T Consensus 480 ip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~ 556 (699)
T 4gl2_A 480 IKECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSGSGVIERETVNDFREKMMYKAIHCV-QNMKPEEYAHKIL 556 (699)
T ss_dssp CCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHHT-TSSCHHHHHHHHH
T ss_pred cccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCCchHHHHHHHHHHHHHHHHHHHHHh-ccCCHHHHHHHHH
Confidence 999999999999999999999999987765 444444443321111 11111111111 1111111112222
Q ss_pred HHhHHHHHHHhhcCcchHHHHHhhhCCCcccccCCCcccccc
Q 012746 396 ISDFSQMVDYCEGSGCRRKKILESFGEQVLGCVASVTHRVVS 437 (457)
Q Consensus 396 ~~~~~~~~~~~~~~~c~r~~l~~~f~~~~~~c~~~~~~~~~~ 437 (457)
..+++.+..++....|+|+..+.||++....+|..++..+|.
T Consensus 557 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~ 598 (699)
T 4gl2_A 557 ELQMQSIMEKKMKTKRNIAKHYKNNPSLITFLCKNCSVLACS 598 (699)
T ss_dssp HHHHHHHHHCCSCCC----------CCSEEEEESSSCCEEEE
T ss_pred HHHHHHHHHHHHHHhhhHHhhhhcCcceeEEECCCCCcEEEe
Confidence 334567888888899999999999999976555555544444
No 20
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.9e-42 Score=363.98 Aligned_cols=324 Identities=20% Similarity=0.258 Sum_probs=238.3
Q ss_pred ccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHH-HHcCCCEEEEcCCCchhhHHHHHhhhc----CCCeEEEEcchHH
Q 012746 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIA 89 (457)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~-~~~~~~~lv~a~TGsGKT~~~~l~~l~----~~~~~lvl~P~~~ 89 (457)
-.|+++++++.+.+.+++ +||.+|+|+|.++++. +.++++++++||||+|||+++.++++. .+++++|++|+++
T Consensus 8 ~~~~~l~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~ 86 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKK-RGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRA 86 (715)
T ss_dssp CBGGGSSSCHHHHHHHHT-TSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHH
T ss_pred CcHHHcCCCHHHHHHHHh-CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHH
Confidence 358899999999999997 7999999999999999 778899999999999999999888763 5789999999999
Q ss_pred HHHHHHHHHHH---cCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhh--hhcCCccEEEE
Q 012746 90 LMENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--HSRGLLNLVAI 164 (457)
Q Consensus 90 L~~q~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~--~~~~~l~~lVi 164 (457)
|+.|++++++. +|.......+....... .. ...+++++|| +.+..+... ..+.++++||+
T Consensus 87 La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-----~~----~~~~Iiv~Tp------e~l~~~~~~~~~~l~~~~~vIi 151 (715)
T 2va8_A 87 LTNEKYLTFKDWELIGFKVAMTSGDYDTDDA-----WL----KNYDIIITTY------EKLDSLWRHRPEWLNEVNYFVL 151 (715)
T ss_dssp HHHHHHHHHGGGGGGTCCEEECCSCSSSCCG-----GG----GGCSEEEECH------HHHHHHHHHCCGGGGGEEEEEE
T ss_pred HHHHHHHHHHHhhcCCCEEEEEeCCCCCchh-----hc----CCCCEEEEcH------HHHHHHHhCChhHhhccCEEEE
Confidence 99999999854 35555555443322110 01 1255655555 444444222 22567899999
Q ss_pred eccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCCceE-----------
Q 012746 165 DEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLF----------- 233 (457)
Q Consensus 165 DEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~----------- 233 (457)
||+|.+.+++ +...+.. +....++.+++++|||+++. .++..+++.. .+........+.
T Consensus 152 DE~H~l~~~~--~~~~l~~---i~~~~~~~~ii~lSATl~n~--~~~~~~l~~~---~~~~~~r~~~l~~~~~~~~~~~~ 221 (715)
T 2va8_A 152 DELHYLNDPE--RGPVVES---VTIRAKRRNLLALSATISNY--KQIAKWLGAE---PVATNWRPVPLIEGVIYPERKKK 221 (715)
T ss_dssp CSGGGGGCTT--THHHHHH---HHHHHHTSEEEEEESCCTTH--HHHHHHHTCE---EEECCCCSSCEEEEEEEECSSTT
T ss_pred echhhcCCcc--cchHHHH---HHHhcccCcEEEEcCCCCCH--HHHHHHhCCC---ccCCCCCCCCceEEEEecCCccc
Confidence 9999987654 3433333 33333489999999999863 5667777632 111111111111
Q ss_pred -EEEEEeC-------chhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCC-----------------------
Q 012746 234 -YEVRYKD-------LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG----------------------- 282 (457)
Q Consensus 234 -~~~~~~~-------~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g----------------------- 282 (457)
+.+.... ........+.+.+. .++++||||+++++++.++..|.+..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~ 299 (715)
T 2va8_A 222 EYNVIFKDNTTKKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEG 299 (715)
T ss_dssp EEEEEETTSCEEEEESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSS
T ss_pred ceeeecCcchhhhcccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhc
Confidence 0111111 01344555555553 46789999999999999999998642
Q ss_pred -------------CceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEE----ec-------CCCC
Q 012746 283 -------------ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN-------IPKS 338 (457)
Q Consensus 283 -------------~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~----~~-------~p~s 338 (457)
..+..+||+++.++|..+++.|++|..+|||||+++++|||+|++++||+ || .|.|
T Consensus 300 ~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s 379 (715)
T 2va8_A 300 GSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIP 379 (715)
T ss_dssp CHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------C
T ss_pred cccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCC
Confidence 24899999999999999999999999999999999999999999999999 99 8999
Q ss_pred HHHHHHHhcccCCCC--CCceEEEEeccch
Q 012746 339 MEAFYQESGRAGRDQ--LPSKSLLYYGMDD 366 (457)
Q Consensus 339 ~~~~~Qr~GRagR~g--~~g~~~~~~~~~~ 366 (457)
..+|.||+|||||.| ..|.|+++++..+
T Consensus 380 ~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 380 IMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp HHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred HHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 999999999999988 4789999998766
No 21
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=4.2e-44 Score=376.44 Aligned_cols=328 Identities=19% Similarity=0.264 Sum_probs=197.0
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC--------CCeEEEEcchHHHHHHHHHHH
Q 012746 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGL 98 (457)
Q Consensus 27 ~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~--------~~~~lvl~P~~~L~~q~~~~~ 98 (457)
..+|.. +|+.+|+|+|.++++.+++|+++++++|||+|||++|+++++.. ++++||++|+++|+.|+.+.+
T Consensus 3 ~~~l~~-~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~ 81 (696)
T 2ykg_A 3 VSDTNL-YSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVF 81 (696)
T ss_dssp ----CT-TC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHH
T ss_pred CCcccc-cCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHH
Confidence 345665 79999999999999999999999999999999999999988743 278999999999999999999
Q ss_pred HHc----CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhh--h-hcCCccEEEEecccccc
Q 012746 99 KEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--H-SRGLLNLVAIDEAHCIS 171 (457)
Q Consensus 99 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~--~-~~~~l~~lViDEah~~~ 171 (457)
+++ ++....+.++......... +.. ..+++++||+ .+...... . .+..+++|||||||++.
T Consensus 82 ~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~---~~~Iiv~Tp~------~L~~~l~~~~~~~l~~~~~vViDEaH~~~ 149 (696)
T 2ykg_A 82 SKYFERHGYRVTGISGATAENVPVEQ---IVE---NNDIIILTPQ------ILVNNLKKGTIPSLSIFTLMIFDECHNTS 149 (696)
T ss_dssp HHHTTTTTCCEEEECSSSCSSSCHHH---HHH---TCSEEEECHH------HHHHHHHTTSSCCGGGCSEEEEETGGGCS
T ss_pred HHHhccCCceEEEEeCCccccccHHH---hcc---CCCEEEECHH------HHHHHHhcCcccccccccEEEEeCCCccc
Confidence 986 5666666655432111111 111 1566655555 44333222 1 35568999999999997
Q ss_pred ccCCCCHHHHHHHHHHHHh------CCCccEEEEeccCC-------hhHHHHHHHHcCCCCCeEEecCC----------C
Q 012746 172 SWGHDFRPSYRKLSSLRNY------LPDVPILALTATAA-------PKVQKDVMESLCLQNPLVLKSSF----------N 228 (457)
Q Consensus 172 ~~~~~~~~~~~~l~~~~~~------~~~~~~v~lSAT~~-------~~~~~~~~~~~~~~~~~~~~~~~----------~ 228 (457)
.+. .+.... ..+... .+..++++||||+. ......+...+...+...+.... .
T Consensus 150 ~~~-~~~~i~---~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~ 225 (696)
T 2ykg_A 150 KQH-PYNMIM---FNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVY 225 (696)
T ss_dssp TTC-HHHHHH---HHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSC
T ss_pred Ccc-cHHHHH---HHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcC
Confidence 543 222221 112221 24688999999998 33334333332111110000000 0
Q ss_pred CCceE---------------------------------------------------------------EEEEE-------
Q 012746 229 RPNLF---------------------------------------------------------------YEVRY------- 238 (457)
Q Consensus 229 ~~~i~---------------------------------------------------------------~~~~~------- 238 (457)
.|... .....
T Consensus 226 ~p~~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (696)
T 2ykg_A 226 KPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRI 305 (696)
T ss_dssp CCEEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHH
T ss_pred CCceeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHH
Confidence 00000 00000
Q ss_pred ---------------------------------------------------------------------eCchhhHHHHH
Q 012746 239 ---------------------------------------------------------------------KDLLDDAYADL 249 (457)
Q Consensus 239 ---------------------------------------------------------------------~~~~~~~~~~l 249 (457)
......++..|
T Consensus 306 ~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L 385 (696)
T 2ykg_A 306 CKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDL 385 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 00013456666
Q ss_pred HHHHHhc----CCccEEEEeCCcccHHHHHHHHHhCC----CceEee--------cCCCCHHHHHHHHHHHhc-CCceEE
Q 012746 250 CSVLKAN----GDTCAIVYCLERTTCDELSAYLSAGG----ISCAAY--------HAGLNDKARSSVLDDWIS-SRKQVV 312 (457)
Q Consensus 250 ~~~l~~~----~~~~~iIf~~s~~~~~~l~~~L~~~g----~~~~~~--------~~~~~~~~r~~~~~~f~~-g~~~vL 312 (457)
.++++.. +++++||||+++..++.+++.|+..| +.+..+ ||+|++++|..++++|++ |+.+||
T Consensus 386 ~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vL 465 (696)
T 2ykg_A 386 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNIL 465 (696)
T ss_dssp HHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCS
T ss_pred HHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEE
Confidence 6776654 66789999999999999999999987 888888 559999999999999998 999999
Q ss_pred EEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHH
Q 012746 313 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373 (457)
Q Consensus 313 vaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i 373 (457)
|||+++++|||+|++++||+||+|+|+.+|+||+|| ||. +.|.++++++..+......+
T Consensus 466 VaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 466 IATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp EEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred EEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 999999999999999999999999999999999999 998 78999999998877554433
No 22
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-43 Score=379.05 Aligned_cols=336 Identities=17% Similarity=0.146 Sum_probs=240.3
Q ss_pred ccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC---CCeEEEEcchHHHH
Q 012746 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALM 91 (457)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~---~~~~lvl~P~~~L~ 91 (457)
..|+.+++++.+...+...++| +|+|+|.++++.+.+|++++++||||+|||++|.++++.. +++++|++|+++|+
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f-~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa 240 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALS 240 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSS-CCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHH
T ss_pred CCcccCCCChhhhHHHHHhCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHH
Confidence 3566777777777677665454 5999999999999999999999999999999999888754 88999999999999
Q ss_pred HHHHHHHHHcCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh--hhhcCCccEEEEecccc
Q 012746 92 ENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNLVAIDEAHC 169 (457)
Q Consensus 92 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~--~~~~~~l~~lViDEah~ 169 (457)
.|+++.++........+.+... .....+++++||+ .+..+.. ...+.++++|||||||+
T Consensus 241 ~Q~~~~l~~~~~~VglltGd~~-------------~~~~~~IlV~Tpe------~L~~~L~~~~~~l~~l~lVVIDEaH~ 301 (1108)
T 3l9o_A 241 NQKYRELLAEFGDVGLMTGDIT-------------INPDAGCLVMTTE------ILRSMLYRGSEVMREVAWVIFDEVHY 301 (1108)
T ss_dssp HHHHHHHHHHTSSEEEECSSCB-------------CCCSCSEEEEEHH------HHHHHHHHCSSHHHHEEEEEEETGGG
T ss_pred HHHHHHHHHHhCCccEEeCccc-------------cCCCCCEEEeChH------HHHHHHHcCccccccCCEEEEhhhhh
Confidence 9999999996556666555443 1223566555555 4333321 22244589999999999
Q ss_pred ccccCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcC--CCCCeE-EecCCCCCceEEEEEE-------
Q 012746 170 ISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLC--LQNPLV-LKSSFNRPNLFYEVRY------- 238 (457)
Q Consensus 170 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~i~~~~~~------- 238 (457)
+.+++ +... +..+...++ +.++++||||+++.. ++..+++ ...+.. +........+...+..
T Consensus 302 l~d~~--rg~~---~e~ii~~l~~~~qvl~lSATipn~~--e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~ 374 (1108)
T 3l9o_A 302 MRDKE--RGVV---WEETIILLPDKVRYVFLSATIPNAM--EFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIY 374 (1108)
T ss_dssp TTSHH--HHHH---HHHHHHHSCTTSEEEEEECSCSSCH--HHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCE
T ss_pred ccccc--hHHH---HHHHHHhcCCCceEEEEcCCCCCHH--HHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCccee
Confidence 98876 3333 344444554 789999999987753 2233322 122222 2222111111111100
Q ss_pred -----eCc------------------------------------------hhhHHHHHHHHHHhcCCccEEEEeCCcccH
Q 012746 239 -----KDL------------------------------------------LDDAYADLCSVLKANGDTCAIVYCLERTTC 271 (457)
Q Consensus 239 -----~~~------------------------------------------~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~ 271 (457)
... ....+..+...+...+..++||||+++..|
T Consensus 375 ~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~ 454 (1108)
T 3l9o_A 375 LVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDC 454 (1108)
T ss_dssp EEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHH
T ss_pred eeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHH
Confidence 000 023334455555666777899999999999
Q ss_pred HHHHHHHHhCCCc---------------------------------------eEeecCCCCHHHHHHHHHHHhcCCceEE
Q 012746 272 DELSAYLSAGGIS---------------------------------------CAAYHAGLNDKARSSVLDDWISSRKQVV 312 (457)
Q Consensus 272 ~~l~~~L~~~g~~---------------------------------------~~~~~~~~~~~~r~~~~~~f~~g~~~vL 312 (457)
+.++..|...++. +..+||+|++.+|..+++.|++|.++||
T Consensus 455 e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVL 534 (1108)
T 3l9o_A 455 EELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVL 534 (1108)
T ss_dssp HHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEE
Confidence 9999988653222 7899999999999999999999999999
Q ss_pred EEeccccccCCCCCccEEEEecC--------CCCHHHHHHHhcccCCCC--CCceEEEEeccc-hHHHHHHHHHhc
Q 012746 313 VATVAFGMGIDRKDVRLVCHFNI--------PKSMEAFYQESGRAGRDQ--LPSKSLLYYGMD-DRRRMEFILSKN 377 (457)
Q Consensus 313 vaT~~~~~Gldip~v~~Vi~~~~--------p~s~~~~~Qr~GRagR~g--~~g~~~~~~~~~-~~~~~~~i~~~~ 377 (457)
|||+++++|||+|++++||+++. |.|+.+|+||+|||||.| ..|.+++++.+. +...+..++...
T Consensus 535 VAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~ 610 (1108)
T 3l9o_A 535 FATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQ 610 (1108)
T ss_dssp EEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCC
T ss_pred EECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcCC
Confidence 99999999999999999997665 347889999999999999 678888888765 555566666543
No 23
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1.9e-42 Score=354.71 Aligned_cols=318 Identities=19% Similarity=0.242 Sum_probs=179.5
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC--------CCeEEEEcchHHHHHHHHHHHHHc----C
Q 012746 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKEK----G 102 (457)
Q Consensus 35 g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~--------~~~~lvl~P~~~L~~q~~~~~~~~----~ 102 (457)
+.-+|+|+|.++++.+++|+++++.+|||+|||++|++|++.. ++++||++|+++|+.|+.+.++.+ +
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 83 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQG 83 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 4457999999999999999999999999999999999998654 788999999999999999999885 6
Q ss_pred CceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhh--h-hcCCccEEEEeccccccccCCCCHH
Q 012746 103 IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--H-SRGLLNLVAIDEAHCISSWGHDFRP 179 (457)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~--~-~~~~l~~lViDEah~~~~~~~~~~~ 179 (457)
.....+.++............ ..+++++|| +.+..+... . ....+++||+||||++.+++. +..
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~~------~~~i~v~T~------~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~ 150 (556)
T 4a2p_A 84 YSVQGISGENFSNVSVEKVIE------DSDIIVVTP------QILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNV 150 (556)
T ss_dssp CCEEECCCC-----CHHHHHH------HCSEEEECH------HHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSH-HHH
T ss_pred ceEEEEeCCCCcchhHHHhhC------CCCEEEECH------HHHHHHHHhCcccccccCCEEEEECCcccCCcch-HHH
Confidence 777666665533222111111 145555554 444444332 2 456789999999999988763 222
Q ss_pred HHHHHHHHHHh-----CCCccEEEEeccCChh----------HHHHHHHHcCCCCCeEEe-------cCCCCCceEEEEE
Q 012746 180 SYRKLSSLRNY-----LPDVPILALTATAAPK----------VQKDVMESLCLQNPLVLK-------SSFNRPNLFYEVR 237 (457)
Q Consensus 180 ~~~~l~~~~~~-----~~~~~~v~lSAT~~~~----------~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~~~~ 237 (457)
.. ..+... .+..+++++|||++.. ....+...++........ ....++.......
T Consensus 151 ~~---~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (556)
T 4a2p_A 151 LM---TRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLV 227 (556)
T ss_dssp HH---HHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEEC
T ss_pred HH---HHHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEc
Confidence 21 122221 3468899999999642 112222333211000000 0001111111100
Q ss_pred Ee------------------------------------------------------------------------------
Q 012746 238 YK------------------------------------------------------------------------------ 239 (457)
Q Consensus 238 ~~------------------------------------------------------------------------------ 239 (457)
..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (556)
T 4a2p_A 228 KRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEH 307 (556)
T ss_dssp CCCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHH
T ss_pred CCCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHH
Confidence 00
Q ss_pred ------------------------------------------------------------CchhhHHHHHHHHHHh----
Q 012746 240 ------------------------------------------------------------DLLDDAYADLCSVLKA---- 255 (457)
Q Consensus 240 ------------------------------------------------------------~~~~~~~~~l~~~l~~---- 255 (457)
.....|+..|.+++..
T Consensus 308 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~ 387 (556)
T 4a2p_A 308 LRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRY 387 (556)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcC
Confidence 0002344455555543
Q ss_pred cCCccEEEEeCCcccHHHHHHHHHhC------------CCceEeecCCCCHHHHHHHHHHHhc-CCceEEEEeccccccC
Q 012746 256 NGDTCAIVYCLERTTCDELSAYLSAG------------GISCAAYHAGLNDKARSSVLDDWIS-SRKQVVVATVAFGMGI 322 (457)
Q Consensus 256 ~~~~~~iIf~~s~~~~~~l~~~L~~~------------g~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~Gl 322 (457)
.++.++||||+++..++.+++.|++. |.....+||++++++|..++++|++ |+++|||||+++++|+
T Consensus 388 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~Gi 467 (556)
T 4a2p_A 388 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 467 (556)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC------
T ss_pred CCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCC
Confidence 56789999999999999999999876 5556677888999999999999999 9999999999999999
Q ss_pred CCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHH
Q 012746 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370 (457)
Q Consensus 323 dip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~ 370 (457)
|+|++++||+||+|+|+..|+||+|| ||. +.|.++++++..+.+..
T Consensus 468 Dip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~ 513 (556)
T 4a2p_A 468 DIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVEN 513 (556)
T ss_dssp -----CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHHHH
T ss_pred CchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchHHH
Confidence 99999999999999999999999999 998 78999999998766443
No 24
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=2.2e-42 Score=373.16 Aligned_cols=329 Identities=17% Similarity=0.198 Sum_probs=241.2
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc---CCCeEEEEcchHHHHHHHHHHHHHc
Q 012746 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKEK 101 (457)
Q Consensus 25 ~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~---~~~~~lvl~P~~~L~~q~~~~~~~~ 101 (457)
++.+.++..+||. |+|+|.++++.+++|+|++++||||+|||++|+++++. .+++++|++||++|+.|+.+.++.+
T Consensus 66 ~~~~~~~~~~gf~-pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 66 DFRSFFKKKFGKD-LTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp HHHHHHHHHSSSC-CCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCC-CCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHh
Confidence 3455666668984 99999999999999999999999999999988887665 5889999999999999999999994
Q ss_pred ---CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccc------
Q 012746 102 ---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS------ 172 (457)
Q Consensus 102 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~------ 172 (457)
++....+.++............+..+. .++ +++||+++.++.......++++||+||||++..
T Consensus 145 ~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~--~~I------lV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~D 216 (1104)
T 4ddu_A 145 ADEKVKIFGFYSSMKKEEKEKFEKSFEEDD--YHI------LVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNID 216 (1104)
T ss_dssp SCTTSCEEEECTTCCTTHHHHHHHHHHTSC--CSE------EEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHH
T ss_pred hCCCCeEEEEeCCCCHHHHHHHHHHHhCCC--CCE------EEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccch
Confidence 456677777766544444555555544 455 455556655544446667899999999987765
Q ss_pred -----cCCCCHHH-HHHHHHHHH------hC---CCccEEEEeccC-ChhHHHHHHH-HcCCCCCeEEecCCCCCceEEE
Q 012746 173 -----WGHDFRPS-YRKLSSLRN------YL---PDVPILALTATA-APKVQKDVME-SLCLQNPLVLKSSFNRPNLFYE 235 (457)
Q Consensus 173 -----~~~~~~~~-~~~l~~~~~------~~---~~~~~v~lSAT~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~ 235 (457)
+| |.+. +..+..... .. ++.|++++|||+ +......+.. .+... +........++...
T Consensus 217 r~L~~~g--f~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~---v~~~~~~~~~i~~~ 291 (1104)
T 4ddu_A 217 TLLMMVG--IPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFT---VGRLVSVARNITHV 291 (1104)
T ss_dssp HHHHTSS--CCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCC---CCBCCCCCCCEEEE
T ss_pred hhhHhcC--CCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEE---eccCCCCcCCceeE
Confidence 55 4443 333333222 00 468999999994 4443322232 22211 11122334455444
Q ss_pred EEEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceE-eecCCCCHHHHHHHHHHHhcCCceEEEE
Q 012746 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCA-AYHAGLNDKARSSVLDDWISSRKQVVVA 314 (457)
Q Consensus 236 ~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~-~~~~~~~~~~r~~~~~~f~~g~~~vLva 314 (457)
+... ++...|.++++.. ++++||||+++..++.++..|+..|+.+. .+|| +|.+ ++.|++|+.+||||
T Consensus 292 ~~~~----~k~~~L~~ll~~~-~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVa 360 (1104)
T 4ddu_A 292 RISS----RSKEKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIG 360 (1104)
T ss_dssp EESC----CCHHHHHHHHHHH-CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEE
T ss_pred EEec----CHHHHHHHHHHhc-CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEE
Confidence 4433 2445566666663 47899999999999999999999999998 9999 2555 99999999999999
Q ss_pred ----eccccccCCCCC-ccEEEEecCCC----------------------------------------------------
Q 012746 315 ----TVAFGMGIDRKD-VRLVCHFNIPK---------------------------------------------------- 337 (457)
Q Consensus 315 ----T~~~~~Gldip~-v~~Vi~~~~p~---------------------------------------------------- 337 (457)
|+++++|||+|+ |++|||||+|.
T Consensus 361 tas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~ 440 (1104)
T 4ddu_A 361 VQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEK 440 (1104)
T ss_dssp ETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHH
T ss_pred ecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 999999999999 99999999998
Q ss_pred --------------------CHHHHHHHhcccCCCCCCc--eEEEEeccchHHHHHHHHHhcc
Q 012746 338 --------------------SMEAFYQESGRAGRDQLPS--KSLLYYGMDDRRRMEFILSKNQ 378 (457)
Q Consensus 338 --------------------s~~~~~Qr~GRagR~g~~g--~~~~~~~~~~~~~~~~i~~~~~ 378 (457)
++.+|+||+||+||.|..| .++.++..+|.+.++.+.+...
T Consensus 441 i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 441 VKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp HHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred HhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHh
Confidence 7889999999999965433 3444444467777777666543
No 25
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.6e-42 Score=363.42 Aligned_cols=328 Identities=22% Similarity=0.246 Sum_probs=240.9
Q ss_pred cCCCCC--hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc---CCCeEEEEcchHHH
Q 012746 16 KNKPLH--EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIAL 90 (457)
Q Consensus 16 ~~~~~~--l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~---~~~~~lvl~P~~~L 90 (457)
.|++++ +++.+.+.+++ +||.+|+|+|.++++.+.+++++++++|||+|||+++.++++. .+++++|++|+++|
T Consensus 2 ~f~~l~~~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~L 80 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKE-EGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRAL 80 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHC-C---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHH
T ss_pred chhhhhhccCHHHHHHHHh-CCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHH
Confidence 366777 99999999987 7999999999999999999999999999999999999988874 47899999999999
Q ss_pred HHHHHHHHHH---cCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhh--hhcCCccEEEEe
Q 012746 91 MENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--HSRGLLNLVAID 165 (457)
Q Consensus 91 ~~q~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~--~~~~~l~~lViD 165 (457)
+.|++++++. +|.......+....... .....+++++| |+.+..+... ..+.++++||+|
T Consensus 81 a~q~~~~~~~~~~~g~~v~~~~G~~~~~~~---------~~~~~~Iiv~T------pe~l~~~l~~~~~~l~~~~~vIiD 145 (702)
T 2p6r_A 81 AGEKYESFKKWEKIGLRIGISTGDYESRDE---------HLGDCDIIVTT------SEKADSLIRNRASWIKAVSCLVVD 145 (702)
T ss_dssp HHHHHHHHTTTTTTTCCEEEECSSCBCCSS---------CSTTCSEEEEE------HHHHHHHHHTTCSGGGGCCEEEET
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCCCcchh---------hccCCCEEEEC------HHHHHHHHHcChhHHhhcCEEEEe
Confidence 9999999864 35555555443321110 01135555554 5554444322 125568999999
Q ss_pred ccccccccCCCCHHHHHHH-HHHHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCCceEEEEE------E
Q 012746 166 EAHCISSWGHDFRPSYRKL-SSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR------Y 238 (457)
Q Consensus 166 Eah~~~~~~~~~~~~~~~l-~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~ 238 (457)
|+|.+.+++ +...+..+ ..++...++.+++++|||+++. .++..+++.. .+..+.....+...+. .
T Consensus 146 E~H~l~~~~--r~~~~~~ll~~l~~~~~~~~ii~lSATl~n~--~~~~~~l~~~---~~~~~~r~~~l~~~~~~~~~~~~ 218 (702)
T 2p6r_A 146 EIHLLDSEK--RGATLEILVTKMRRMNKALRVIGLSATAPNV--TEIAEWLDAD---YYVSDWRPVPLVEGVLCEGTLEL 218 (702)
T ss_dssp TGGGGGCTT--THHHHHHHHHHHHHHCTTCEEEEEECCCTTH--HHHHHHTTCE---EEECCCCSSCEEEEEECSSEEEE
T ss_pred eeeecCCCC--cccHHHHHHHHHHhcCcCceEEEECCCcCCH--HHHHHHhCCC---cccCCCCCccceEEEeeCCeeec
Confidence 999998765 34444443 3344445689999999999863 5667777632 2222111111111110 0
Q ss_pred eC------chhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhC------------------------------C
Q 012746 239 KD------LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG------------------------------G 282 (457)
Q Consensus 239 ~~------~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~------------------------------g 282 (457)
.. ........+.+.++ .++++||||++++.++.++..|.+. +
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 296 (702)
T 2p6r_A 219 FDGAFSTSRRVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVR 296 (702)
T ss_dssp EETTEEEEEECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHH
T ss_pred cCcchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHh
Confidence 00 00114455555554 4678999999999999999988753 1
Q ss_pred CceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEE----ec---CCCCHHHHHHHhcccCCCC--
Q 012746 283 ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN---IPKSMEAFYQESGRAGRDQ-- 353 (457)
Q Consensus 283 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~----~~---~p~s~~~~~Qr~GRagR~g-- 353 (457)
..+..+||+++.++|..+++.|++|..+|||||+++++|||+|++++||+ || .|.|..+|.||+|||||.|
T Consensus 297 ~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~ 376 (702)
T 2p6r_A 297 KGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMD 376 (702)
T ss_dssp TTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTC
T ss_pred cCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCC
Confidence 35889999999999999999999999999999999999999999999998 66 7899999999999999988
Q ss_pred CCceEEEEeccchHH
Q 012746 354 LPSKSLLYYGMDDRR 368 (457)
Q Consensus 354 ~~g~~~~~~~~~~~~ 368 (457)
..|.|+++++..+.+
T Consensus 377 ~~G~~~~l~~~~~~~ 391 (702)
T 2p6r_A 377 ERGEAIIIVGKRDRE 391 (702)
T ss_dssp SCEEEEEECCGGGHH
T ss_pred CCceEEEEecCccHH
Confidence 478999999888743
No 26
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2.9e-42 Score=369.33 Aligned_cols=373 Identities=17% Similarity=0.209 Sum_probs=258.1
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhh---cCCCeEEEEcchHHHHHHHHHHHHH
Q 012746 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKE 100 (457)
Q Consensus 24 ~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l---~~~~~~lvl~P~~~L~~q~~~~~~~ 100 (457)
.++...+...|+|. |+|+|.++++.+++|+++++.+|||+|||++|++++. ..+++++|++|+++|+.|++++++.
T Consensus 26 ~~l~~~~~~~~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~ 104 (997)
T 4a4z_A 26 DELIPNPARSWPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKE 104 (997)
T ss_dssp HHHCSSCSCCCSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHT
T ss_pred hhhhHhHHHhCCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHH
Confidence 33434445567887 8999999999999999999999999999999887765 3478899999999999999999998
Q ss_pred c--CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHH--hhhhcCCccEEEEeccccccccCCC
Q 012746 101 K--GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRGLLNLVAIDEAHCISSWGHD 176 (457)
Q Consensus 101 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~--~~~~~~~l~~lViDEah~~~~~~~~ 176 (457)
. +.....+.+... .....+++++||+.+ ..+. ....+..+++|||||||++.+|++.
T Consensus 105 ~~~~~~v~~l~G~~~-------------~~~~~~IlV~Tpe~L------~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g 165 (997)
T 4a4z_A 105 TFDDVNIGLITGDVQ-------------INPDANCLIMTTEIL------RSMLYRGADLIRDVEFVIFDEVHYVNDQDRG 165 (997)
T ss_dssp TC--CCEEEECSSCE-------------ECTTSSEEEEEHHHH------HHHHHHTCSGGGGEEEEEECCTTCCCTTCTT
T ss_pred HcCCCeEEEEeCCCc-------------cCCCCCEEEECHHHH------HHHHHhCchhhcCCCEEEEECcccccccchH
Confidence 5 445665555442 112356666666544 2222 2224556899999999999998743
Q ss_pred CHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCC--CCe-EEecCCCCCceEEEEEE-------e------
Q 012746 177 FRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQ--NPL-VLKSSFNRPNLFYEVRY-------K------ 239 (457)
Q Consensus 177 ~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~i~~~~~~-------~------ 239 (457)
.. +..+...++ +.+++++|||+++.. ++..|++.. .+. ++........+...+.. .
T Consensus 166 --~~---~e~ii~~l~~~v~iIlLSAT~~n~~--ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~ 238 (997)
T 4a4z_A 166 --VV---WEEVIIMLPQHVKFILLSATVPNTY--EFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEF 238 (997)
T ss_dssp --CC---HHHHHHHSCTTCEEEEEECCCTTHH--HHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCB
T ss_pred --HH---HHHHHHhcccCCCEEEEcCCCCChH--HHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhh
Confidence 22 333444454 799999999998654 455555421 222 22222211111111100 0
Q ss_pred -------------------------------------------------------------------------------C
Q 012746 240 -------------------------------------------------------------------------------D 240 (457)
Q Consensus 240 -------------------------------------------------------------------------------~ 240 (457)
.
T Consensus 239 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (997)
T 4a4z_A 239 LEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDG 318 (997)
T ss_dssp CHHHHHHHHHHHC-----------------------------------------------------------------CC
T ss_pred hHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0
Q ss_pred chhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCC-------------------------------------
Q 012746 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI------------------------------------- 283 (457)
Q Consensus 241 ~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~------------------------------------- 283 (457)
.....+..+...+...+..++||||+++..|+.++..|...++
T Consensus 319 ~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l 398 (997)
T 4a4z_A 319 PSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLL 398 (997)
T ss_dssp CCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHh
Confidence 0123456677778877778999999999999999999977665
Q ss_pred --ceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEecCCC---------CHHHHHHHhcccCCC
Q 012746 284 --SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK---------SMEAFYQESGRAGRD 352 (457)
Q Consensus 284 --~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~---------s~~~~~Qr~GRagR~ 352 (457)
.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|+ ..||+++.|+ |+.+|+||+|||||.
T Consensus 399 ~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~ 477 (997)
T 4a4z_A 399 ERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRR 477 (997)
T ss_dssp TTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCT
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccC
Confidence 4789999999999999999999999999999999999999999 5566555555 999999999999999
Q ss_pred C--CCceEEEEe--ccchHHHHHHHHHhcccCCCCccc----hhhhhhHHHHHhHHHHHHHh------hcCcchHHHHHh
Q 012746 353 Q--LPSKSLLYY--GMDDRRRMEFILSKNQSKNSQSFS----TRERSSKKSISDFSQMVDYC------EGSGCRRKKILE 418 (457)
Q Consensus 353 g--~~g~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~------~~~~c~r~~l~~ 418 (457)
| ..|.+++++ ...+...++.++..........+. ....+.+........|..++ +...|.+...++
T Consensus 478 G~~~~G~vi~l~~~~~~~~~~~~~~i~~~~~~l~s~~~~~ynm~l~ll~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~l~ 557 (997)
T 4a4z_A 478 GLDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKYSFSENAKETLQPEHEKQIK 557 (997)
T ss_dssp TTCSSEEEEEECCSSCCCHHHHHHHHHSCCCCCCCCCCCCHHHHHHHHHHCTTHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCcceEEEEecCCCcchHHHHHHHhcCCCcccccccccchHHHHHHHhhccccHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 8 457777777 334666666665544332211110 01111122222334444444 345788888999
Q ss_pred hhCCCc
Q 012746 419 SFGEQV 424 (457)
Q Consensus 419 ~f~~~~ 424 (457)
+|++..
T Consensus 558 ~l~~~~ 563 (997)
T 4a4z_A 558 VLQEEL 563 (997)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 27
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=2.4e-42 Score=363.19 Aligned_cols=326 Identities=21% Similarity=0.274 Sum_probs=241.8
Q ss_pred cCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHH-HHcCCCEEEEcCCCchhhHHHHHhhhc----CCCeEEEEcchHHH
Q 012746 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIAL 90 (457)
Q Consensus 16 ~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~-~~~~~~~lv~a~TGsGKT~~~~l~~l~----~~~~~lvl~P~~~L 90 (457)
.|+++++++.+.+.+++ +||.+|+|+|.++++. +.+++++++++|||+|||++|.++++. .+++++|++|+++|
T Consensus 2 ~f~~l~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raL 80 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKE-RGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKAL 80 (720)
T ss_dssp BGGGCCSCHHHHHHHHH-TTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGG
T ss_pred cHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHH
Confidence 47889999999999998 7999999999999998 788999999999999999999888763 47899999999999
Q ss_pred HHHHHHHHHH---cCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh--hhhcCCccEEEEe
Q 012746 91 MENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNLVAID 165 (457)
Q Consensus 91 ~~q~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~--~~~~~~l~~lViD 165 (457)
+.|++++++. +|.......+....... .. ...+++++||+ .+..+.. ...+.++++||+|
T Consensus 81 a~q~~~~~~~l~~~g~~v~~~~G~~~~~~~-----~~----~~~~Iiv~Tpe------~l~~~~~~~~~~l~~~~~vIiD 145 (720)
T 2zj8_A 81 AEEKFQEFQDWEKIGLRVAMATGDYDSKDE-----WL----GKYDIIIATAE------KFDSLLRHGSSWIKDVKILVAD 145 (720)
T ss_dssp HHHHHHHTGGGGGGTCCEEEECSCSSCCCG-----GG----GGCSEEEECHH------HHHHHHHHTCTTGGGEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCEEEEecCCCCcccc-----cc----CCCCEEEECHH------HHHHHHHcChhhhhcCCEEEEE
Confidence 9999999864 46666665554322111 00 12556555554 4444422 2225568999999
Q ss_pred ccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCCceEEEE------EEe
Q 012746 166 EAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV------RYK 239 (457)
Q Consensus 166 Eah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------~~~ 239 (457)
|+|.+.+++ +...+..+..... ++.+++++|||+++. .++..+++.. .+........+...+ ...
T Consensus 146 E~H~l~~~~--r~~~~~~ll~~l~--~~~~ii~lSATl~n~--~~~~~~l~~~---~~~~~~rp~~l~~~~~~~~~~~~~ 216 (720)
T 2zj8_A 146 EIHLIGSRD--RGATLEVILAHML--GKAQIIGLSATIGNP--EELAEWLNAE---LIVSDWRPVKLRRGVFYQGFVTWE 216 (720)
T ss_dssp TGGGGGCTT--THHHHHHHHHHHB--TTBEEEEEECCCSCH--HHHHHHTTEE---EEECCCCSSEEEEEEEETTEEEET
T ss_pred CCcccCCCc--ccHHHHHHHHHhh--cCCeEEEEcCCcCCH--HHHHHHhCCc---ccCCCCCCCcceEEEEeCCeeecc
Confidence 999998755 3333333322222 278999999999864 5667777521 121111111111111 010
Q ss_pred C----chhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhC---------------------------------C
Q 012746 240 D----LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG---------------------------------G 282 (457)
Q Consensus 240 ~----~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~---------------------------------g 282 (457)
. ....+...+.+.++ +++++||||++++.++.++..|.+. .
T Consensus 217 ~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~ 294 (720)
T 2zj8_A 217 DGSIDRFSSWEELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIR 294 (720)
T ss_dssp TSCEEECSSTTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHT
T ss_pred ccchhhhhHHHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence 0 01233444555544 3578999999999999999998753 1
Q ss_pred CceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEE----ec----CCCCHHHHHHHhcccCCCC-
Q 012746 283 ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN----IPKSMEAFYQESGRAGRDQ- 353 (457)
Q Consensus 283 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~----~~----~p~s~~~~~Qr~GRagR~g- 353 (457)
..+..+||+++.++|..+++.|++|.++|||||+++++|||+|++++||+ || .|.|..+|+||+|||||.|
T Consensus 295 ~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~ 374 (720)
T 2zj8_A 295 GGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKY 374 (720)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTT
T ss_pred cCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCC
Confidence 24899999999999999999999999999999999999999999999998 66 5899999999999999988
Q ss_pred -CCceEEEEeccchHH
Q 012746 354 -LPSKSLLYYGMDDRR 368 (457)
Q Consensus 354 -~~g~~~~~~~~~~~~ 368 (457)
..|.|+++++..+..
T Consensus 375 ~~~G~~~~l~~~~~~~ 390 (720)
T 2zj8_A 375 DEVGEGIIVSTSDDPR 390 (720)
T ss_dssp CSEEEEEEECSSSCHH
T ss_pred CCCceEEEEecCccHH
Confidence 468899999887743
No 28
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=3e-42 Score=353.10 Aligned_cols=316 Identities=19% Similarity=0.221 Sum_probs=204.3
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC--------CCeEEEEcchHHHHHHHHHHHHHc----CCce
Q 012746 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKEK----GIAG 105 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~--------~~~~lvl~P~~~L~~q~~~~~~~~----~~~~ 105 (457)
+|+|+|.++++.+++|+++++.+|||+|||++|++|++.. ++++||++|+++|+.|+.+.++.+ +...
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 5999999999999999999999999999999999988653 788999999999999999999885 6777
Q ss_pred eEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhh--h-hcCCccEEEEeccccccccCCCCHHHHH
Q 012746 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--H-SRGLLNLVAIDEAHCISSWGHDFRPSYR 182 (457)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~--~-~~~~l~~lViDEah~~~~~~~~~~~~~~ 182 (457)
..+.++............ ..+++++|| +.+...... . ....+++||+||||++.+.+. ++...
T Consensus 84 ~~~~g~~~~~~~~~~~~~------~~~i~v~T~------~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~- 149 (555)
T 3tbk_A 84 ASISGATSDSVSVQHIIE------DNDIIILTP------QILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHP-YNQIM- 149 (555)
T ss_dssp EEECTTTGGGSCHHHHHH------HCSEEEECH------HHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCH-HHHHH-
T ss_pred EEEcCCCcchhhHHHHhc------CCCEEEECH------HHHHHHHhcCcccccccCCEEEEECccccCCcch-HHHHH-
Confidence 776666533221111111 145555554 444444332 1 355689999999999987542 22222
Q ss_pred HHHHHHHh------CCCccEEEEeccCChhH----------HHHHHHHcCCCCCeEEec---------CCCCCceEEEEE
Q 012746 183 KLSSLRNY------LPDVPILALTATAAPKV----------QKDVMESLCLQNPLVLKS---------SFNRPNLFYEVR 237 (457)
Q Consensus 183 ~l~~~~~~------~~~~~~v~lSAT~~~~~----------~~~~~~~~~~~~~~~~~~---------~~~~~~i~~~~~ 237 (457)
..+... .+..+++++|||+.... ...+...++.. .+... ...++.......
T Consensus 150 --~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~ 225 (555)
T 3tbk_A 150 --FRYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDAS--VIATVRDNVAELEQVVYKPQKISRKV 225 (555)
T ss_dssp --HHHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCS--EEECCCSCHHHHHTTCCCCCEEEEEC
T ss_pred --HHHHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCe--eeeccccCHHHHHhhcCCCceEEEEe
Confidence 222222 14678999999996531 12233333311 11110 011122111111
Q ss_pred EeC-----------------------------------------------------------------------------
Q 012746 238 YKD----------------------------------------------------------------------------- 240 (457)
Q Consensus 238 ~~~----------------------------------------------------------------------------- 240 (457)
...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (555)
T 3tbk_A 226 ASRTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTS 305 (555)
T ss_dssp CCCSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHH
T ss_pred cCcccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHH
Confidence 100
Q ss_pred --------------------------------------------------------------chhhHHHHHHHHHHh---
Q 012746 241 --------------------------------------------------------------LLDDAYADLCSVLKA--- 255 (457)
Q Consensus 241 --------------------------------------------------------------~~~~~~~~l~~~l~~--- 255 (457)
....+...+.++++.
T Consensus 306 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~ 385 (555)
T 3tbk_A 306 HLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYH 385 (555)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhc
Confidence 002344445555543
Q ss_pred -cCCccEEEEeCCcccHHHHHHHHHhCC------------CceEeecCCCCHHHHHHHHHHHhc-CCceEEEEecccccc
Q 012746 256 -NGDTCAIVYCLERTTCDELSAYLSAGG------------ISCAAYHAGLNDKARSSVLDDWIS-SRKQVVVATVAFGMG 321 (457)
Q Consensus 256 -~~~~~~iIf~~s~~~~~~l~~~L~~~g------------~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~G 321 (457)
.+++++||||+++..++.+++.|...+ .....+||+|++++|..++++|++ |+.+|||||+++++|
T Consensus 386 ~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~G 465 (555)
T 3tbk_A 386 LKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEG 465 (555)
T ss_dssp HCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCC
T ss_pred cCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcC
Confidence 466899999999999999999999864 344556679999999999999999 999999999999999
Q ss_pred CCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHH
Q 012746 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373 (457)
Q Consensus 322 ldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i 373 (457)
+|+|++++||+||+|+|+..|+||+|| ||. +.|.+++++++.+.+....+
T Consensus 466 lDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 466 IDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp EETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred CccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 999999999999999999999999999 998 89999999998876555433
No 29
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.8e-42 Score=359.94 Aligned_cols=316 Identities=20% Similarity=0.192 Sum_probs=237.7
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC------CCEEEEcCCCchhhHHHHHhhhcC---CCeEEEEcchHHHHHH
Q 012746 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMEN 93 (457)
Q Consensus 23 ~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~------~~~lv~a~TGsGKT~~~~l~~l~~---~~~~lvl~P~~~L~~q 93 (457)
..++.+.+.+.+|| +|+++|.++++.++++ .++++++|||+|||++|+++++.. +.+++|++||++|+.|
T Consensus 354 ~~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q 432 (780)
T 1gm5_A 354 EGKLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQ 432 (780)
T ss_dssp CTHHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHH
T ss_pred chHHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHH
Confidence 33555565556899 7999999999998865 589999999999999999988764 8899999999999999
Q ss_pred HHHHHHHc----CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEecccc
Q 012746 94 QVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC 169 (457)
Q Consensus 94 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~ 169 (457)
+++.++++ ++....+.++.........+..+..+. .+++++||..+ .+...+.++++||+||+|+
T Consensus 433 ~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~--~~IvVgT~~ll---------~~~~~~~~l~lVVIDEaHr 501 (780)
T 1gm5_A 433 HYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQ--IDVVIGTHALI---------QEDVHFKNLGLVIIDEQHR 501 (780)
T ss_dssp HHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSC--CCEEEECTTHH---------HHCCCCSCCCEEEEESCCC
T ss_pred HHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCC--CCEEEECHHHH---------hhhhhccCCceEEecccch
Confidence 99998874 677888888888777766777776655 67777777543 2344567799999999999
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEec-CCCCCceEEEEEEeCchhhHHHH
Q 012746 170 ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNLFYEVRYKDLLDDAYAD 248 (457)
Q Consensus 170 ~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~ 248 (457)
+.. ..+ ..+.....+.++++||||+.+.... ....+..+..++.. +..+..+...+.... ....
T Consensus 502 ~g~---~qr------~~l~~~~~~~~vL~mSATp~p~tl~--~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~----~~~~ 566 (780)
T 1gm5_A 502 FGV---KQR------EALMNKGKMVDTLVMSATPIPRSMA--LAFYGDLDVTVIDEMPPGRKEVQTMLVPMD----RVNE 566 (780)
T ss_dssp C--------------CCCCSSSSCCCEEEEESSCCCHHHH--HHHTCCSSCEEECCCCSSCCCCEECCCCSS----THHH
T ss_pred hhH---HHH------HHHHHhCCCCCEEEEeCCCCHHHHH--HHHhCCcceeeeeccCCCCcceEEEEeccc----hHHH
Confidence 632 111 1122233468899999999887655 33333333333322 223333333222222 2233
Q ss_pred HHHHHHh--cCCccEEEEeCCcc--------cHHHHHHHHHh---CCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEe
Q 012746 249 LCSVLKA--NGDTCAIVYCLERT--------TCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (457)
Q Consensus 249 l~~~l~~--~~~~~~iIf~~s~~--------~~~~l~~~L~~---~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT 315 (457)
+.+.+.. ..+.+++|||++.+ .++.+++.|.+ .++.+..+||+|++.+|..+++.|++|+.+|||||
T Consensus 567 l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT 646 (780)
T 1gm5_A 567 VYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVST 646 (780)
T ss_dssp HHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCS
T ss_pred HHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEEC
Confidence 3344432 34678999999764 47888888887 47889999999999999999999999999999999
Q ss_pred ccccccCCCCCccEEEEecCCC-CHHHHHHHhcccCCCCCCceEEEEeccc
Q 012746 316 VAFGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (457)
Q Consensus 316 ~~~~~Gldip~v~~Vi~~~~p~-s~~~~~Qr~GRagR~g~~g~~~~~~~~~ 365 (457)
+++++|+|+|++++||+++.|. +...|.||+||+||.|+.|.|++++.+.
T Consensus 647 ~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~ 697 (780)
T 1gm5_A 647 TVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDV 697 (780)
T ss_dssp SCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSC
T ss_pred CCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCC
Confidence 9999999999999999999996 7899999999999999999999998743
No 30
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-41 Score=360.67 Aligned_cols=320 Identities=18% Similarity=0.189 Sum_probs=235.0
Q ss_pred HHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc---CCCeEEEEcchHHHHHHHHHHHHHcCCceeE
Q 012746 31 RWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKEKGIAGEF 107 (457)
Q Consensus 31 ~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~---~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~ 107 (457)
...|||. |+|+|.++++.+.+|+++++++|||+|||++|.++++. .+.+++|++|+++|+.|+++.+.........
T Consensus 80 ~~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vgl 158 (1010)
T 2xgj_A 80 ARTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGL 158 (1010)
T ss_dssp SCCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEE
T ss_pred HHhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEE
Confidence 3447887 99999999999999999999999999999999887764 5889999999999999999999985445555
Q ss_pred ecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHH--hhhhcCCccEEEEeccccccccCCCCHHHHHHHH
Q 012746 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS 185 (457)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~--~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~ 185 (457)
+.+.... ..+.+++++||+.+ ..+. ....+..+++|||||||.+.+++. . ..+.
T Consensus 159 ltGd~~~-------------~~~~~IvV~Tpe~L------~~~L~~~~~~l~~l~lVViDEaH~l~d~~r--g---~~~e 214 (1010)
T 2xgj_A 159 MTGDITI-------------NPDAGCLVMTTEIL------RSMLYRGSEVMREVAWVIFDEVHYMRDKER--G---VVWE 214 (1010)
T ss_dssp ECSSCEE-------------CTTCSEEEEEHHHH------HHHHHHTCTTGGGEEEEEEETGGGGGCTTT--H---HHHH
T ss_pred EeCCCcc-------------CCCCCEEEEcHHHH------HHHHHcCcchhhcCCEEEEechhhhcccch--h---HHHH
Confidence 5544321 12356666665543 3332 223456689999999999988763 2 2334
Q ss_pred HHHHhCC-CccEEEEeccCChhHHHHHHHHcC--CCCCeEEecCCCCC-ceEEEEEEeC---------------------
Q 012746 186 SLRNYLP-DVPILALTATAAPKVQKDVMESLC--LQNPLVLKSSFNRP-NLFYEVRYKD--------------------- 240 (457)
Q Consensus 186 ~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~i~~~~~~~~--------------------- 240 (457)
.+...++ +.+++++|||+++.. .+..|++ ...+..+.....++ .+...+....
T Consensus 215 ~il~~l~~~~~il~LSATi~n~~--e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (1010)
T 2xgj_A 215 ETIILLPDKVRYVFLSATIPNAM--EFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQK 292 (1010)
T ss_dssp HHHHHSCTTCEEEEEECCCTTHH--HHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHH
T ss_pred HHHHhcCCCCeEEEEcCCCCCHH--HHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHH
Confidence 4445555 789999999998753 2334432 12222222111111 1111111000
Q ss_pred --------------------------ch-------hhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCc---
Q 012746 241 --------------------------LL-------DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS--- 284 (457)
Q Consensus 241 --------------------------~~-------~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~--- 284 (457)
.. ...+..+...+...+..++||||+++..|+.++..|...++.
T Consensus 293 ~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~ 372 (1010)
T 2xgj_A 293 AMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDD 372 (1010)
T ss_dssp HHHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHH
T ss_pred HHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChH
Confidence 00 122344555555566678999999999999999999775442
Q ss_pred ------------------------------------eEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCcc
Q 012746 285 ------------------------------------CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328 (457)
Q Consensus 285 ------------------------------------~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~ 328 (457)
+..+||++++.+|..+++.|++|.++|||||+++++|||+|+++
T Consensus 373 e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~ 452 (1010)
T 2xgj_A 373 EKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKT 452 (1010)
T ss_dssp HHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSE
T ss_pred HHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCce
Confidence 78899999999999999999999999999999999999999999
Q ss_pred EEEE----ecC----CCCHHHHHHHhcccCCCCC--CceEEEEeccc-hHHHHHHHHHhc
Q 012746 329 LVCH----FNI----PKSMEAFYQESGRAGRDQL--PSKSLLYYGMD-DRRRMEFILSKN 377 (457)
Q Consensus 329 ~Vi~----~~~----p~s~~~~~Qr~GRagR~g~--~g~~~~~~~~~-~~~~~~~i~~~~ 377 (457)
+||+ ||. |.|+.+|+||+|||||.|. .|.+++++++. +...+..++...
T Consensus 453 vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~~ 512 (1010)
T 2xgj_A 453 VVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQ 512 (1010)
T ss_dssp EEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSCC
T ss_pred EEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHhCC
Confidence 9999 998 8999999999999999996 59999999866 666666665533
No 31
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.2e-40 Score=335.37 Aligned_cols=312 Identities=19% Similarity=0.225 Sum_probs=230.4
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc----CCCeEEEEcchHHHHHHHHHHHHHc-CC---ceeEec
Q 012746 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEK-GI---AGEFLS 109 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~----~~~~~lvl~P~~~L~~q~~~~~~~~-~~---~~~~~~ 109 (457)
+|+|+|.++++.++++ ++++.+|||+|||++++++++. .++++||++|+++|+.|+.+++.++ +. ....+.
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~ 87 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALT 87 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEEC
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEee
Confidence 5999999999999998 9999999999999999988765 3889999999999999999999985 54 566666
Q ss_pred CCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh--hhhcCCccEEEEeccccccccCCCCHHHHHHHHHH
Q 012746 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL 187 (457)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~--~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~ 187 (457)
+..........+. ..+++++||+.+ ..... ......+++||+||||++.+... +. .....+
T Consensus 88 g~~~~~~~~~~~~-------~~~ivv~T~~~l------~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~-~~---~~~~~~ 150 (494)
T 1wp9_A 88 GEKSPEERSKAWA-------RAKVIVATPQTI------ENDLLAGRISLEDVSLIVFDEAHRAVGNYA-YV---FIAREY 150 (494)
T ss_dssp SCSCHHHHHHHHH-------HCSEEEECHHHH------HHHHHTTSCCTTSCSEEEEETGGGCSTTCH-HH---HHHHHH
T ss_pred CCcchhhhhhhcc-------CCCEEEecHHHH------HHHHhcCCcchhhceEEEEECCcccCCCCc-HH---HHHHHH
Confidence 6665544333222 156666665544 33222 33456799999999999875321 11 222334
Q ss_pred HHhCCCccEEEEeccCChh--HHHHHHHHcCCCCCeEEecCC-------CCCceEEEEEEe-------------------
Q 012746 188 RNYLPDVPILALTATAAPK--VQKDVMESLCLQNPLVLKSSF-------NRPNLFYEVRYK------------------- 239 (457)
Q Consensus 188 ~~~~~~~~~v~lSAT~~~~--~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~------------------- 239 (457)
....+..+++++|||+... ....+...++...+....... ............
T Consensus 151 ~~~~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (494)
T 1wp9_A 151 KRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDAL 230 (494)
T ss_dssp HHHCSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHH
Confidence 4455688999999999833 344555555543222211100 000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 012746 240 -------------------------------------------------------------------------------- 239 (457)
Q Consensus 240 -------------------------------------------------------------------------------- 239 (457)
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 310 (494)
T 1wp9_A 231 KPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKA 310 (494)
T ss_dssp HHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhcc
Confidence
Q ss_pred ----------------------------CchhhHHHHHHHHHHh----cCCccEEEEeCCcccHHHHHHHHHhCCCceEe
Q 012746 240 ----------------------------DLLDDAYADLCSVLKA----NGDTCAIVYCLERTTCDELSAYLSAGGISCAA 287 (457)
Q Consensus 240 ----------------------------~~~~~~~~~l~~~l~~----~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~ 287 (457)
.....|+..+.++++. ..+.++||||+++..++.+++.|++.|+.+..
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~ 390 (494)
T 1wp9_A 311 GSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKR 390 (494)
T ss_dssp TCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEE
T ss_pred ccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEE
Confidence 0112345556666655 56889999999999999999999999999999
Q ss_pred ecC--------CCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEE
Q 012746 288 YHA--------GLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSL 359 (457)
Q Consensus 288 ~~~--------~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~ 359 (457)
+|| +++..+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|+|+..|+||+||+||.|+ |.++
T Consensus 391 ~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~ 469 (494)
T 1wp9_A 391 FVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVI 469 (494)
T ss_dssp ECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEE
T ss_pred EeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEE
Confidence 999 9999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred EEeccchHH
Q 012746 360 LYYGMDDRR 368 (457)
Q Consensus 360 ~~~~~~~~~ 368 (457)
.++++++.+
T Consensus 470 ~l~~~~t~e 478 (494)
T 1wp9_A 470 ILMAKGTRD 478 (494)
T ss_dssp EEEETTSHH
T ss_pred EEEecCCHH
Confidence 999887654
No 32
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=4.3e-40 Score=357.56 Aligned_cols=323 Identities=20% Similarity=0.189 Sum_probs=249.0
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHc----CC--CEEEEcCCCchhhHHHHHhhh---cCCCeEEEEcch
Q 012746 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS----GR--DCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPL 87 (457)
Q Consensus 17 ~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~----~~--~~lv~a~TGsGKT~~~~l~~l---~~~~~~lvl~P~ 87 (457)
...++.+..+.+.+...|||. +||+|.++++.+++ ++ ++++++|||+|||.+++++++ ..+.+++|++||
T Consensus 583 g~~~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt 661 (1151)
T 2eyq_A 583 GFAFKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPT 661 (1151)
T ss_dssp CCCCCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSS
T ss_pred CCCCCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEech
Confidence 345567777888888889998 69999999999886 65 899999999999999887764 458899999999
Q ss_pred HHHHHHHHHHHHHc----CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEE
Q 012746 88 IALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVA 163 (457)
Q Consensus 88 ~~L~~q~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lV 163 (457)
++|+.|+++.+++. ++....+.+.............+..+. .+++++||.++ .+...+.++++||
T Consensus 662 ~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~--~dIvV~T~~ll---------~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 662 TLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGK--IDILIGTHKLL---------QSDVKFKDLGLLI 730 (1151)
T ss_dssp HHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTC--CSEEEECTHHH---------HSCCCCSSEEEEE
T ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCC--CCEEEECHHHH---------hCCccccccceEE
Confidence 99999999999863 456666777666666666666666655 67777777543 2334566799999
Q ss_pred EeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecC-CCCCceEEEEEEeCch
Q 012746 164 IDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-FNRPNLFYEVRYKDLL 242 (457)
Q Consensus 164 iDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~ 242 (457)
|||+|++.. .....+....++.++++||||+.+..... ...++.+...+... ..+..+...+.... .
T Consensus 731 iDEaH~~g~---------~~~~~l~~l~~~~~vl~lSATp~p~~l~~--~~~~~~~~~~i~~~~~~r~~i~~~~~~~~-~ 798 (1151)
T 2eyq_A 731 VDEEHRFGV---------RHKERIKAMRANVDILTLTATPIPRTLNM--AMSGMRDLSIIATPPARRLAVKTFVREYD-S 798 (1151)
T ss_dssp EESGGGSCH---------HHHHHHHHHHTTSEEEEEESSCCCHHHHH--HHTTTSEEEECCCCCCBCBCEEEEEEECC-H
T ss_pred EechHhcCh---------HHHHHHHHhcCCCCEEEEcCCCChhhHHH--HHhcCCCceEEecCCCCccccEEEEecCC-H
Confidence 999999532 11122333335789999999998887653 33444444444332 23333433333332 1
Q ss_pred hhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhC--CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccc
Q 012746 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320 (457)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 320 (457)
......+...+ ..+++++|||+++++++.+++.|++. +..+..+||+|++.+|..+++.|++|+.+|||||+++++
T Consensus 799 ~~i~~~il~~l--~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~ 876 (1151)
T 2eyq_A 799 MVVREAILREI--LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIET 876 (1151)
T ss_dssp HHHHHHHHHHH--TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGG
T ss_pred HHHHHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCccee
Confidence 22233333333 24678999999999999999999987 789999999999999999999999999999999999999
Q ss_pred cCCCCCccEEEEecC-CCCHHHHHHHhcccCCCCCCceEEEEeccc
Q 012746 321 GIDRKDVRLVCHFNI-PKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (457)
Q Consensus 321 Gldip~v~~Vi~~~~-p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~ 365 (457)
|+|+|++++||+++. +.++.+|.||+||+||.|+.|.|++++.+.
T Consensus 877 GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 877 GIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp GSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred eecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 999999999999988 579999999999999999999999998764
No 33
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=3.1e-41 Score=358.07 Aligned_cols=319 Identities=19% Similarity=0.252 Sum_probs=185.9
Q ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC--------CCeEEEEcchHHHHHHHHHHHHHc---
Q 012746 33 HFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKEK--- 101 (457)
Q Consensus 33 ~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~--------~~~~lvl~P~~~L~~q~~~~~~~~--- 101 (457)
.+|+.+|+|+|.++++.+++|+++++++|||+|||++|+++++.. ++++||++|+++|+.|+.+.++++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 468899999999999999999999999999999999999998754 789999999999999999999885
Q ss_pred -CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhh--h-hcCCccEEEEeccccccccCCCC
Q 012746 102 -GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--H-SRGLLNLVAIDEAHCISSWGHDF 177 (457)
Q Consensus 102 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~--~-~~~~l~~lViDEah~~~~~~~~~ 177 (457)
++....+.++.......... .. ..+++++||+ .+...... . .+..+++|||||||++...+. +
T Consensus 323 ~~~~v~~~~g~~~~~~~~~~~---~~---~~~Ivv~Tp~------~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~-~ 389 (797)
T 4a2q_A 323 QGYSVQGISGENFSNVSVEKV---IE---DSDIIVVTPQ------ILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-Y 389 (797)
T ss_dssp GTCCEEEECCC-----CHHHH---HH---TCSEEEECHH------HHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSH-H
T ss_pred CCceEEEEeCCcchhhhHHHh---hC---CCCEEEEchH------HHHHHHHhccccccccCCEEEEECccccCCCcc-H
Confidence 77777777665433221111 11 1556555554 44333222 1 345689999999999976432 2
Q ss_pred HHHHHHHHHHHHh-----CCCccEEEEeccCCh----------hHHHHHHHHcCCCCCeEEe-------cCCCCCceEEE
Q 012746 178 RPSYRKLSSLRNY-----LPDVPILALTATAAP----------KVQKDVMESLCLQNPLVLK-------SSFNRPNLFYE 235 (457)
Q Consensus 178 ~~~~~~l~~~~~~-----~~~~~~v~lSAT~~~----------~~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~~ 235 (457)
... +..+... .+..+++++|||+.. .....+...++........ ....++...+.
T Consensus 390 ~~i---~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~ 466 (797)
T 4a2q_A 390 NVL---MTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVR 466 (797)
T ss_dssp HHH---HHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEE
T ss_pred HHH---HHHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEE
Confidence 222 2222222 456889999999963 1222223333211000000 00011111110
Q ss_pred EEE------------------------------------e---C------------------------------------
Q 012746 236 VRY------------------------------------K---D------------------------------------ 240 (457)
Q Consensus 236 ~~~------------------------------------~---~------------------------------------ 240 (457)
... . .
T Consensus 467 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 546 (797)
T 4a2q_A 467 LVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICT 546 (797)
T ss_dssp ECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHH
T ss_pred ecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 000 0 0
Q ss_pred ---------------------------------------------------------------chhhHHHHHHHHHHh--
Q 012746 241 ---------------------------------------------------------------LLDDAYADLCSVLKA-- 255 (457)
Q Consensus 241 ---------------------------------------------------------------~~~~~~~~l~~~l~~-- 255 (457)
....|+..|.+++..
T Consensus 547 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~ 626 (797)
T 4a2q_A 547 EHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAY 626 (797)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHh
Confidence 002244445555543
Q ss_pred --cCCccEEEEeCCcccHHHHHHHHHhC------------CCceEeecCCCCHHHHHHHHHHHhc-CCceEEEEeccccc
Q 012746 256 --NGDTCAIVYCLERTTCDELSAYLSAG------------GISCAAYHAGLNDKARSSVLDDWIS-SRKQVVVATVAFGM 320 (457)
Q Consensus 256 --~~~~~~iIf~~s~~~~~~l~~~L~~~------------g~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~ 320 (457)
.++.++||||+++..++.+++.|++. |..+..+||++++.+|..++++|++ |+.+|||||+++++
T Consensus 627 ~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~ 706 (797)
T 4a2q_A 627 RYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADE 706 (797)
T ss_dssp HHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC---
T ss_pred ccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhc
Confidence 56789999999999999999999874 5566778999999999999999999 99999999999999
Q ss_pred cCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHH
Q 012746 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (457)
Q Consensus 321 Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~ 369 (457)
|||+|++++||+||+|+|+..|+||+|| ||. +.|.++++++..+...
T Consensus 707 GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ee 753 (797)
T 4a2q_A 707 GIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 753 (797)
T ss_dssp ----CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHHH
T ss_pred CCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHHH
Confidence 9999999999999999999999999999 999 7899999998876543
No 34
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.4e-40 Score=370.93 Aligned_cols=385 Identities=18% Similarity=0.184 Sum_probs=261.9
Q ss_pred ccCCCCChH---HHHHHHHHHhcCCCCCCHHHHHHHHHHHcC-CCEEEEcCCCchhhHHHHHhhhcC-----CCeEEEEc
Q 012746 15 QKNKPLHEK---EALVKLLRWHFGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVS 85 (457)
Q Consensus 15 ~~~~~~~l~---~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~l~~l~~-----~~~~lvl~ 85 (457)
....+++++ +...+++.. .+|..|+|+|.++++.++++ +|++++||||||||++|.++++.. +++++|++
T Consensus 901 ldl~plp~s~L~~~~~e~l~~-~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~ 979 (1724)
T 4f92_B 901 LDLQPLPVSALRNSAFESLYQ-DKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYIT 979 (1724)
T ss_dssp CCCCCCBGGGSCCHHHHTTTT-TTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred ccCCCCCcccccCHHHHHHHH-hcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEc
Confidence 344444443 344555554 37999999999999999865 689999999999999999998653 67899999
Q ss_pred chHHHHHHHHHHHHH-----cCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhh----hhc
Q 012746 86 PLIALMENQVIGLKE-----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI----HSR 156 (457)
Q Consensus 86 P~~~L~~q~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~----~~~ 156 (457)
|+++|+.|.++.|++ +|..+..+.+....... . .. ..+++++| |+.+..+.+. ..+
T Consensus 980 P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~--~---~~----~~~IiV~T------PEkld~llr~~~~~~~l 1044 (1724)
T 4f92_B 980 PMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK--L---LG----KGNIIIST------PEKWDILSRRWKQRKNV 1044 (1724)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH--H---HH----HCSEEEEC------HHHHHHHHTTTTTCHHH
T ss_pred ChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchh--h---cC----CCCEEEEC------HHHHHHHHhCccccccc
Confidence 999999999998875 34455555544322211 1 11 14555555 4555444332 224
Q ss_pred CCccEEEEeccccccccC-CCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEec-CCCCCc-e
Q 012746 157 GLLNLVAIDEAHCISSWG-HDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPN-L 232 (457)
Q Consensus 157 ~~l~~lViDEah~~~~~~-~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-i 232 (457)
.++++||+||+|.+.+.. ..++..+.++..+....+ +.|+|+||||+++. .++.+|++......... +..||. +
T Consensus 1045 ~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~--~dla~WL~~~~~~~~~~~~~~RPvpL 1122 (1724)
T 4f92_B 1045 QNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNA--KDVAHWLGCSATSTFNFHPNVRPVPL 1122 (1724)
T ss_dssp HSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH--HHHHHHHTCCSTTEEECCGGGCSSCE
T ss_pred ceeeEEEeechhhcCCCCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH--HHHHHHhCCCCCCeEEeCCCCCCCCe
Confidence 568999999999987532 111222233333444443 78999999999875 57899998776544433 333332 2
Q ss_pred EEEEEEe--CchhhHH----HHHHHHHH-hcCCccEEEEeCCcccHHHHHHHHHhC------------------------
Q 012746 233 FYEVRYK--DLLDDAY----ADLCSVLK-ANGDTCAIVYCLERTTCDELSAYLSAG------------------------ 281 (457)
Q Consensus 233 ~~~~~~~--~~~~~~~----~~l~~~l~-~~~~~~~iIf~~s~~~~~~l~~~L~~~------------------------ 281 (457)
...+... ....... ..+...+. ...++++||||+|+..|+.++..|...
T Consensus 1123 ~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~ 1202 (1724)
T 4f92_B 1123 ELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEK 1202 (1724)
T ss_dssp EEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTT
T ss_pred EEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhh
Confidence 2222211 1111111 11222332 346778999999999998888766321
Q ss_pred ----------CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEE----------ecCCCCHHH
Q 012746 282 ----------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----------FNIPKSMEA 341 (457)
Q Consensus 282 ----------g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~----------~~~p~s~~~ 341 (457)
..++.+||++|++.+|..+++.|++|.++|||||+++++|||+|..++||. ...|.++.+
T Consensus 1203 ~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~ 1282 (1724)
T 4f92_B 1203 LSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYD 1282 (1724)
T ss_dssp CCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHH
T ss_pred cccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHH
Confidence 135889999999999999999999999999999999999999999999883 234678999
Q ss_pred HHHHhcccCCCCC--CceEEEEeccchHHHHHHHHHhcccCCCCccchh-----hhhhHHHHHhHHHHHHHhhcCcchHH
Q 012746 342 FYQESGRAGRDQL--PSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR-----ERSSKKSISDFSQMVDYCEGSGCRRK 414 (457)
Q Consensus 342 ~~Qr~GRagR~g~--~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~c~r~ 414 (457)
|+||+|||||.|. .|.+++++...+...++.++....+..+...... .++........++..+|+..+...|+
T Consensus 1283 ~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r 1362 (1724)
T 4f92_B 1283 VLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRR 1362 (1724)
T ss_dssp HHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTTSCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHH
T ss_pred HHHhhccccCCCCCCceEEEEEecchHHHHHHHHhCCCCceeeecccchHHHHHHHHHhcccCCHHHHHHHHHhhHHHHH
Confidence 9999999999986 6899999999999999988876654433322111 12222333445667777777666555
Q ss_pred HHH
Q 012746 415 KIL 417 (457)
Q Consensus 415 ~l~ 417 (457)
...
T Consensus 1363 ~~~ 1365 (1724)
T 4f92_B 1363 MTQ 1365 (1724)
T ss_dssp HHH
T ss_pred Hhc
Confidence 443
No 35
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.1e-39 Score=332.51 Aligned_cols=315 Identities=17% Similarity=0.157 Sum_probs=227.8
Q ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc---CCCeEEEEcchHHHHHHHHHHHHH----cCCce
Q 012746 33 HFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE----KGIAG 105 (457)
Q Consensus 33 ~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~---~~~~~lvl~P~~~L~~q~~~~~~~----~~~~~ 105 (457)
.+|+ .|+|+|..+++.+++|+ ++.++||+|||++|.+|++. .+..++|++||++||.|..+.+.. +|+.+
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v 155 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTV 155 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCE
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeE
Confidence 4799 89999999999999998 99999999999999999873 377899999999999998887765 57888
Q ss_pred eEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhH-HHH-Hh-------hhhcCCccEEEEecccccc-ccCC
Q 012746 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM-SKL-KK-------IHSRGLLNLVAIDEAHCIS-SWGH 175 (457)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~-~~l-~~-------~~~~~~l~~lViDEah~~~-~~~~ 175 (457)
..+.++.........+. ++| +++||+.+ .++ .+ ...++.+.++|+||||.++ +.+.
T Consensus 156 ~~i~gg~~~~~r~~~~~--------~dI------v~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~ 221 (844)
T 1tf5_A 156 GLNLNSMSKDEKREAYA--------ADI------TYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEAR 221 (844)
T ss_dssp EECCTTSCHHHHHHHHH--------SSE------EEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTT
T ss_pred EEEeCCCCHHHHHHhcC--------CCE------EEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccc
Confidence 87777766544332211 445 45555554 122 21 2345678999999999997 6542
Q ss_pred C----------CHHHHHHHHHHHHhCC----------CccEE-----------------EEeccCCh---hHHHHHHHH-
Q 012746 176 D----------FRPSYRKLSSLRNYLP----------DVPIL-----------------ALTATAAP---KVQKDVMES- 214 (457)
Q Consensus 176 ~----------~~~~~~~l~~~~~~~~----------~~~~v-----------------~lSAT~~~---~~~~~~~~~- 214 (457)
. -...|..+..+...++ +.++. ++|||.+. .+...+...
T Consensus 222 tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~ 301 (844)
T 1tf5_A 222 TPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHV 301 (844)
T ss_dssp CEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHH
T ss_pred cchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHH
Confidence 1 0123556666666664 34554 67777542 111111110
Q ss_pred cCCCC--C------------------------------------------------------------------------
Q 012746 215 LCLQN--P------------------------------------------------------------------------ 220 (457)
Q Consensus 215 ~~~~~--~------------------------------------------------------------------------ 220 (457)
+...+ +
T Consensus 302 l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~ 381 (844)
T 1tf5_A 302 AMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEE 381 (844)
T ss_dssp TCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGH
T ss_pred HhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhH
Confidence 10000 0
Q ss_pred ---------eEEecCCCCCceEEEE--EEeCchhhHHHHHHHHHHh--cCCccEEEEeCCcccHHHHHHHHHhCCCceEe
Q 012746 221 ---------LVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAA 287 (457)
Q Consensus 221 ---------~~~~~~~~~~~i~~~~--~~~~~~~~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~ 287 (457)
.++..+.+++.+.... .......+|+..+.+.+.. ..+.++||||+|++.++.++..|++.|+++..
T Consensus 382 ~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~v 461 (844)
T 1tf5_A 382 EEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQV 461 (844)
T ss_dssp HHHHHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEE
T ss_pred HHHHHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEE
Confidence 0111122233322110 1112345788888887764 35668999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCC--------CccEEEEecCCCCHHHHHHHhcccCCCCCCceEE
Q 012746 288 YHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK--------DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSL 359 (457)
Q Consensus 288 ~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip--------~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~ 359 (457)
+||++.+.+|..+.+.|+.| .|+|||++++||+||+ ++.+||+|+.|.|...|.||+||+||.|.+|.++
T Consensus 462 Lhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~ 539 (844)
T 1tf5_A 462 LNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQ 539 (844)
T ss_dssp ECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEE
T ss_pred eeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEE
Confidence 99999888887766666555 6999999999999999 7889999999999999999999999999999999
Q ss_pred EEeccch
Q 012746 360 LYYGMDD 366 (457)
Q Consensus 360 ~~~~~~~ 366 (457)
+|++..|
T Consensus 540 ~~vs~eD 546 (844)
T 1tf5_A 540 FYLSMED 546 (844)
T ss_dssp EEEETTS
T ss_pred EEecHHH
Confidence 9998765
No 36
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=3.8e-40 Score=353.30 Aligned_cols=316 Identities=19% Similarity=0.260 Sum_probs=185.7
Q ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC--------CCeEEEEcchHHHHHHHHHHHHHc---
Q 012746 33 HFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKEK--- 101 (457)
Q Consensus 33 ~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~--------~~~~lvl~P~~~L~~q~~~~~~~~--- 101 (457)
.+|+.+|+|+|.++++.+++|+++++.+|||+|||++|+++++.. ++++||++|+++|+.|+.+.++++
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 322 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 357889999999999999999999999999999999999998765 778999999999999999999885
Q ss_pred -CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhh--h-hcCCccEEEEeccccccccCCCC
Q 012746 102 -GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--H-SRGLLNLVAIDEAHCISSWGHDF 177 (457)
Q Consensus 102 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~--~-~~~~l~~lViDEah~~~~~~~~~ 177 (457)
++....+.++............ ..+++++||+ .+...... . .+..+++||+||||++...+. +
T Consensus 323 ~~~~v~~~~G~~~~~~~~~~~~~------~~~IvI~Tp~------~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~-~ 389 (936)
T 4a2w_A 323 QGYSVQGISGENFSNVSVEKVIE------DSDIIVVTPQ------ILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-Y 389 (936)
T ss_dssp TTCCEEEECCC-----CCHHHHH------HCSEEEECHH------HHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCH-H
T ss_pred cCceEEEEECCcchhhHHHHhcc------CCCEEEecHH------HHHHHHHcCccccccCCCEEEEECccccCCCcc-H
Confidence 6777776666533221111111 1456555554 44443322 1 345589999999999987542 2
Q ss_pred HHHHHHHHHHHHh-----CCCccEEEEeccCCh----------hHHHHHHHHcCCCCCeEEecC---------CCCCceE
Q 012746 178 RPSYRKLSSLRNY-----LPDVPILALTATAAP----------KVQKDVMESLCLQNPLVLKSS---------FNRPNLF 233 (457)
Q Consensus 178 ~~~~~~l~~~~~~-----~~~~~~v~lSAT~~~----------~~~~~~~~~~~~~~~~~~~~~---------~~~~~i~ 233 (457)
... +..+... .+..+++++|||+.. .....+...++.. .+.... ..++...
T Consensus 390 ~~i---~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~--~i~~~~~~~~~l~~~~~~p~~~ 464 (936)
T 4a2w_A 390 NVL---MTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ--AISTVRENIQELQRFMNKPEID 464 (936)
T ss_dssp HHH---HHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCS--EEECCCSSHHHHHHHSCCCCEE
T ss_pred HHH---HHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCc--eeecccccHHHHHHhccCCcce
Confidence 222 2222222 456889999999963 1122222333211 000000 0111111
Q ss_pred EEEEE------------------------------------e---C----------------------------------
Q 012746 234 YEVRY------------------------------------K---D---------------------------------- 240 (457)
Q Consensus 234 ~~~~~------------------------------------~---~---------------------------------- 240 (457)
+.... . .
T Consensus 465 ~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~ 544 (936)
T 4a2w_A 465 VRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFI 544 (936)
T ss_dssp EEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHH
T ss_pred EEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 10000 0 0
Q ss_pred -----------------------------------------------------------------chhhHHHHHHHHHHh
Q 012746 241 -----------------------------------------------------------------LLDDAYADLCSVLKA 255 (457)
Q Consensus 241 -----------------------------------------------------------------~~~~~~~~l~~~l~~ 255 (457)
....|+..|.+++..
T Consensus 545 ~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~ 624 (936)
T 4a2w_A 545 CTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDD 624 (936)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHH
Confidence 001244445555554
Q ss_pred ----cCCccEEEEeCCcccHHHHHHHHHhC------------CCceEeecCCCCHHHHHHHHHHHhc-CCceEEEEeccc
Q 012746 256 ----NGDTCAIVYCLERTTCDELSAYLSAG------------GISCAAYHAGLNDKARSSVLDDWIS-SRKQVVVATVAF 318 (457)
Q Consensus 256 ----~~~~~~iIf~~s~~~~~~l~~~L~~~------------g~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~ 318 (457)
..+.++||||+++..++.+++.|.+. |.....+||+|++.+|..++++|++ |+++|||||+++
T Consensus 625 ~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~ 704 (936)
T 4a2w_A 625 AYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVA 704 (936)
T ss_dssp TTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC-
T ss_pred HhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCch
Confidence 35689999999999999999999986 5556677899999999999999998 999999999999
Q ss_pred cccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHH
Q 012746 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (457)
Q Consensus 319 ~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~ 368 (457)
++|||+|++++||+||+|+|+..|+||+|| ||. +.|.++.+++..+.+
T Consensus 705 ~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 705 DEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp -----CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred hcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 999999999999999999999999999999 998 788999998887654
No 37
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=2.5e-40 Score=357.47 Aligned_cols=325 Identities=16% Similarity=0.214 Sum_probs=231.2
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc----CCCeEEEEcchHHHHHHHHHHHH
Q 012746 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLK 99 (457)
Q Consensus 24 ~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~----~~~~~lvl~P~~~L~~q~~~~~~ 99 (457)
+++.+.+.+.+||. | |+|.++++.+++|+|++++||||+|||+ |.+|++. .+++++|++||++|+.|+.+.++
T Consensus 44 ~~~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~ 120 (1054)
T 1gku_B 44 KEFVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIR 120 (1054)
T ss_dssp HHHHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHH
Confidence 34557777779999 9 9999999999999999999999999998 7777664 47899999999999999999998
Q ss_pred Hc----CC----ceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEecccccc
Q 012746 100 EK----GI----AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (457)
Q Consensus 100 ~~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~ 171 (457)
.+ ++ ....+.++............+.. .+++ ++||+++..+... +..+++||+||||+++
T Consensus 121 ~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~----~~Il------V~TP~~L~~~l~~--L~~l~~lViDEah~~l 188 (1054)
T 1gku_B 121 KYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN----FKIV------ITTTQFLSKHYRE--LGHFDFIFVDDVDAIL 188 (1054)
T ss_dssp HHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG----CSEE------EEEHHHHHHCSTT--SCCCSEEEESCHHHHH
T ss_pred HHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC----CCEE------EEcHHHHHHHHHH--hccCCEEEEeChhhhh
Confidence 74 33 45555665554443333333332 4554 4555554443322 5579999999999999
Q ss_pred ccCCCCHHHHHHHHHHH----Hh-CCCccEEEEeccCChhHH----HHHHHHcCCCCCeEEecCCCCCceEEEEEEeCch
Q 012746 172 SWGHDFRPSYRKLSSLR----NY-LPDVPILALTATAAPKVQ----KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLL 242 (457)
Q Consensus 172 ~~~~~~~~~~~~l~~~~----~~-~~~~~~v~lSAT~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 242 (457)
+|+.+++..+..+.... .. .+..+++++|||+++. . ..+....... +.......+++...+..
T Consensus 189 ~~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~---v~~~~~~~~~i~~~~~~---- 260 (1054)
T 1gku_B 189 KASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFD---IGSSRITVRNVEDVAVN---- 260 (1054)
T ss_dssp TSTHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCC---CSCCEECCCCEEEEEES----
T ss_pred hccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEE---ccCcccCcCCceEEEec----
Confidence 97744333322211000 00 1257899999999876 2 1112222211 00111223344443332
Q ss_pred hhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEE----eccc
Q 012746 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA----TVAF 318 (457)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLva----T~~~ 318 (457)
..+...|.++++.. ++++||||+++..++.+++.|+.. +.+..+||++. .+++.|++|+.+|||| |+++
T Consensus 261 ~~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~ 333 (1054)
T 1gku_B 261 DESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTL 333 (1054)
T ss_dssp CCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC-----
T ss_pred hhHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCee
Confidence 23445566666654 467999999999999999999988 99999999983 6789999999999999 8999
Q ss_pred cccCCCCCc-cEEEEecCC-------------------------------------------------------------
Q 012746 319 GMGIDRKDV-RLVCHFNIP------------------------------------------------------------- 336 (457)
Q Consensus 319 ~~Gldip~v-~~Vi~~~~p------------------------------------------------------------- 336 (457)
++|||+|+| ++||++|+|
T Consensus 334 ~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 413 (1054)
T 1gku_B 334 VRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKD 413 (1054)
T ss_dssp -CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSS
T ss_pred EeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 999999995 999999999
Q ss_pred ----------CCHHHHHHHhcccCCCCCCc--eEEEEeccchHHHHHHHHHhcc
Q 012746 337 ----------KSMEAFYQESGRAGRDQLPS--KSLLYYGMDDRRRMEFILSKNQ 378 (457)
Q Consensus 337 ----------~s~~~~~Qr~GRagR~g~~g--~~~~~~~~~~~~~~~~i~~~~~ 378 (457)
.+..+|+||+||+||.|..| .+++++..++...++.+.+...
T Consensus 414 ~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~ 467 (1054)
T 1gku_B 414 VVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAK 467 (1054)
T ss_dssp SEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHH
T ss_pred eeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHh
Confidence 79999999999999987775 4788887778777777766554
No 38
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.1e-39 Score=361.58 Aligned_cols=331 Identities=19% Similarity=0.222 Sum_probs=233.9
Q ss_pred CCCCCCHHHHHHHHHHHc-CCCEEEEcCCCchhhHHHHHhhhcC--------------CCeEEEEcchHHHHHHHHHHHH
Q 012746 35 GHAQFRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCYQIPALAK--------------PGIVLVVSPLIALMENQVIGLK 99 (457)
Q Consensus 35 g~~~~~~~Q~~~i~~~~~-~~~~lv~a~TGsGKT~~~~l~~l~~--------------~~~~lvl~P~~~L~~q~~~~~~ 99 (457)
||++|+++|.++++.+++ ++|++++||||+|||++|.++++.. +.++||++|+++|+.|.++.|.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 799999999999999885 6899999999999999999988632 5689999999999999999887
Q ss_pred H----cCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh----hhhcCCccEEEEecccccc
Q 012746 100 E----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK----IHSRGLLNLVAIDEAHCIS 171 (457)
Q Consensus 100 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~----~~~~~~l~~lViDEah~~~ 171 (457)
+ +|+.+....++...... .....+++++||| .+..+.+ ...+..+++|||||+|.+.
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---------~~~~~~IlVtTpE------kld~llr~~~~~~~l~~v~~vIiDEvH~l~ 220 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---------EISATQIIVCTPE------KWDIITRKGGERTYTQLVRLIILDEIHLLH 220 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---------TGGGCSEEEECHH------HHHHHTTSSTTHHHHTTEEEEEETTGGGGG
T ss_pred HHHhhCCCEEEEEECCCCCCcc---------ccCCCCEEEECHH------HHHHHHcCCccchhhcCcCEEEEecchhcC
Confidence 6 46666666655432110 0112566666665 4433322 1224569999999999886
Q ss_pred c-cCCCCHHHHHHHHHHH-HhCCCccEEEEeccCChhHHHHHHHHcCCCCC--eEEecCCCCCc-eEEEEEE--eCchhh
Q 012746 172 S-WGHDFRPSYRKLSSLR-NYLPDVPILALTATAAPKVQKDVMESLCLQNP--LVLKSSFNRPN-LFYEVRY--KDLLDD 244 (457)
Q Consensus 172 ~-~~~~~~~~~~~l~~~~-~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-i~~~~~~--~~~~~~ 244 (457)
+ +|...+..+.++.+.. ...++.|+|++|||+++. .++.+|++...+ ..+..+..||. +...+.. ......
T Consensus 221 d~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~--~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~ 298 (1724)
T 4f92_B 221 DDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNY--EDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIK 298 (1724)
T ss_dssp STTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTH--HHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHH
T ss_pred CccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCH--HHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhh
Confidence 4 2211112222222222 233578999999999875 567888875422 22323333332 2211111 111112
Q ss_pred HHHHH----HHHHHh-cCCccEEEEeCCcccHHHHHHHHHhC-------------------------------------C
Q 012746 245 AYADL----CSVLKA-NGDTCAIVYCLERTTCDELSAYLSAG-------------------------------------G 282 (457)
Q Consensus 245 ~~~~l----~~~l~~-~~~~~~iIf~~s~~~~~~l~~~L~~~-------------------------------------g 282 (457)
....+ .+.+.+ ..++++||||+|++.|+.++..|.+. .
T Consensus 299 ~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 378 (1724)
T 4f92_B 299 RFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLP 378 (1724)
T ss_dssp HHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhh
Confidence 22222 222222 34568999999999999998887531 1
Q ss_pred CceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEE----ec------CCCCHHHHHHHhcccCCC
Q 012746 283 ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN------IPKSMEAFYQESGRAGRD 352 (457)
Q Consensus 283 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~----~~------~p~s~~~~~Qr~GRagR~ 352 (457)
.+++++||+|+..+|..+++.|++|.++|||||+++++|||+|..++||. |+ .|.++.+|+||+|||||.
T Consensus 379 ~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~ 458 (1724)
T 4f92_B 379 YGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRP 458 (1724)
T ss_dssp TTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCT
T ss_pred cCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCC
Confidence 25789999999999999999999999999999999999999999999995 44 356899999999999998
Q ss_pred CC--CceEEEEeccchHHHHHHHHHhcccCCC
Q 012746 353 QL--PSKSLLYYGMDDRRRMEFILSKNQSKNS 382 (457)
Q Consensus 353 g~--~g~~~~~~~~~~~~~~~~i~~~~~~~~~ 382 (457)
|. .|.++++....+...+..++....+..+
T Consensus 459 g~d~~G~~ii~~~~~~~~~~~~ll~~~~pieS 490 (1724)
T 4f92_B 459 QYDTKGEGILITSHGELQYYLSLLNQQLPIES 490 (1724)
T ss_dssp TTCSCEEEEEEEESTTCCHHHHHTTTCSCCCC
T ss_pred CCCCccEEEEEecchhHHHHHHHHcCCCcchh
Confidence 74 6899999999998888888776554443
No 39
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=8.5e-40 Score=324.57 Aligned_cols=283 Identities=14% Similarity=0.095 Sum_probs=201.5
Q ss_pred CCCCCCHHHHHHHHHHHcCCCE-EEEcCCCchhhHHHHHhhhc----CCCeEEEEcchHHHHHHHHHHHHHcCCceeEec
Q 012746 35 GHAQFRDKQLDAIQAVLSGRDC-FCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLS 109 (457)
Q Consensus 35 g~~~~~~~Q~~~i~~~~~~~~~-lv~a~TGsGKT~~~~l~~l~----~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~ 109 (457)
|+.+++|.|+ +++.+++++++ ++.+|||||||++|++|++. .+.+++|++||++|+.|+.+.+..+.+ ....
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~~v--~~~~ 77 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALRGLPI--RYQT 77 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCE--EECC
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhcCcee--eeee
Confidence 7889999985 79999998877 88999999999999988764 477999999999999999998864322 1111
Q ss_pred CCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhH-HHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHH
Q 012746 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM-SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (457)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~-~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~ 188 (457)
..... ...+...+ .+.|++.+ ..+.+...+.++++||+||||++ +.+ +......+ ...
T Consensus 78 ~~~~~-----------~~~~~~~i------~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~--~~~~~~~~-~~~ 136 (451)
T 2jlq_A 78 PAVKS-----------DHTGREIV------DLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT-DPC--SVAARGYI-STR 136 (451)
T ss_dssp TTCSC-----------CCCSSCCE------EEEEHHHHHHHHHHCSCCCCCSEEEEETTTCC-SHH--HHHHHHHH-HHH
T ss_pred ccccc-----------cCCCCceE------EEEChHHHHHHhhCcccccCCCEEEEeCCccC-Ccc--hHHHHHHH-HHh
Confidence 11100 01111223 33455533 33444455678999999999987 222 12211112 222
Q ss_pred HhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCCceEEEEEEeCchhhHHHHHHHHHHhcCCccEEEEeCCc
Q 012746 189 NYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268 (457)
Q Consensus 189 ~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~ 268 (457)
...++.++++||||++..... .. ..++.++......+... +..+...+... .+++||||+++
T Consensus 137 ~~~~~~~~i~~SAT~~~~~~~----~~-~~~~~~~~~~~~~p~~~------------~~~~~~~l~~~-~~~~lVF~~s~ 198 (451)
T 2jlq_A 137 VEMGEAAAIFMTATPPGSTDP----FP-QSNSPIEDIEREIPERS------------WNTGFDWITDY-QGKTVWFVPSI 198 (451)
T ss_dssp HHTTSCEEEEECSSCTTCCCS----SC-CCSSCEEEEECCCCSSC------------CSSSCHHHHHC-CSCEEEECSSH
T ss_pred hcCCCceEEEEccCCCccchh----hh-cCCCceEecCccCCchh------------hHHHHHHHHhC-CCCEEEEcCCH
Confidence 344689999999999875432 11 12222222111111100 01122333333 55899999999
Q ss_pred ccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEec--------------
Q 012746 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN-------------- 334 (457)
Q Consensus 269 ~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~-------------- 334 (457)
+.++.+++.|++.|+.+..+|+++. ..+++.|++|+.+|||||+++++|+|+|+ ++||+||
T Consensus 199 ~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~ 273 (451)
T 2jlq_A 199 KAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPER 273 (451)
T ss_dssp HHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCE
T ss_pred HHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccce
Confidence 9999999999999999999999764 46889999999999999999999999999 9999998
Q ss_pred ------CCCCHHHHHHHhcccCCCCC-CceEEEEecc
Q 012746 335 ------IPKSMEAFYQESGRAGRDQL-PSKSLLYYGM 364 (457)
Q Consensus 335 ------~p~s~~~~~Qr~GRagR~g~-~g~~~~~~~~ 364 (457)
.|.|..+|+||+||+||.|. +|.+++++..
T Consensus 274 l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 274 VILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred eeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999998 8888888643
No 40
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=4.6e-40 Score=336.03 Aligned_cols=305 Identities=13% Similarity=0.088 Sum_probs=212.9
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc----CCCeEEEEcchHHHHHHHH
Q 012746 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQV 95 (457)
Q Consensus 20 ~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~----~~~~~lvl~P~~~L~~q~~ 95 (457)
+++++.+.+++.+ ....++|+|+.+++.+++|+++++.||||||||++|++|++. .+.++||++||++|+.|+.
T Consensus 155 l~~~~~~~~~l~~--~~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~ 232 (618)
T 2whx_A 155 VTKSGDYVSAITQ--AERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEME 232 (618)
T ss_dssp -------CEECBC--CCCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHH
T ss_pred ccchHHHHHHHhh--ccccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHH
Confidence 5566666666654 247788988888999999999999999999999999988874 4679999999999999999
Q ss_pred HHHHHcCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCC---cccCchhH-HHHHhhhhcCCccEEEEecccccc
Q 012746 96 IGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE---LTATPGFM-SKLKKIHSRGLLNLVAIDEAHCIS 171 (457)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~---~i~t~~~~-~~l~~~~~~~~l~~lViDEah~~~ 171 (457)
+.+....+ ....... . .++||. .+.+.+.+ ..+.....+.++++||+||||++
T Consensus 233 ~~l~~~~v--~~~~~~l------------~--------~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~- 289 (618)
T 2whx_A 233 EALRGLPI--RYQTPAV------------K--------SDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT- 289 (618)
T ss_dssp HHTTTSCE--EECCTTS------------S--------CCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCC-
T ss_pred HHhcCCce--eEecccc------------e--------eccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCC-
Confidence 88874322 1111000 0 012222 12233332 23334445678999999999997
Q ss_pred ccCCCCHHHHHHHHHHHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCCceEEEEEEeCchhhHHHHHHH
Q 012746 172 SWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCS 251 (457)
Q Consensus 172 ~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~ 251 (457)
+.+ |...+..+..... .++.++++||||++..... ... .++..+......+ ......+..
T Consensus 290 ~~~--~~~~~~~i~~~l~-~~~~q~il~SAT~~~~~~~----~~~-~~~~~~~v~~~~~------------~~~~~~ll~ 349 (618)
T 2whx_A 290 DPC--SVAARGYISTRVE-MGEAAAIFMTATPPGSTDP----FPQ-SNSPIEDIEREIP------------ERSWNTGFD 349 (618)
T ss_dssp SHH--HHHHHHHHHHHHH-HTSCEEEEECSSCTTCCCS----SCC-CSSCEEEEECCCC------------SSCCSSSCH
T ss_pred Ccc--HHHHHHHHHHHhc-ccCccEEEEECCCchhhhh----hhc-cCCceeeecccCC------------HHHHHHHHH
Confidence 322 4434444433332 1578999999999877431 111 2222221111100 011112233
Q ss_pred HHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEE-
Q 012746 252 VLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV- 330 (457)
Q Consensus 252 ~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~V- 330 (457)
.+... .+++||||++++.++.+++.|++.|+++..+||+ +|.++++.|++|+.+|||||+++++|+|+| +++|
T Consensus 350 ~l~~~-~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VI 423 (618)
T 2whx_A 350 WITDY-QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVI 423 (618)
T ss_dssp HHHHC-CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEE
T ss_pred HHHhC-CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEE
Confidence 33333 5689999999999999999999999999999984 678899999999999999999999999997 8887
Q ss_pred -------------------EEecCCCCHHHHHHHhcccCCCCC-CceEEEEec---cchHHHHHHHHH
Q 012746 331 -------------------CHFNIPKSMEAFYQESGRAGRDQL-PSKSLLYYG---MDDRRRMEFILS 375 (457)
Q Consensus 331 -------------------i~~~~p~s~~~~~Qr~GRagR~g~-~g~~~~~~~---~~~~~~~~~i~~ 375 (457)
|+|+.|.+.++|+||+||+||.|. .|.+++|++ +.|...++.+..
T Consensus 424 d~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~ 491 (618)
T 2whx_A 424 DPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEA 491 (618)
T ss_dssp ECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHH
T ss_pred ECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHh
Confidence 788889999999999999999965 899999997 666655555554
No 41
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.6e-39 Score=329.17 Aligned_cols=299 Identities=13% Similarity=0.074 Sum_probs=213.5
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc----CCCeEEEEcchHHHHHHHHHHHHHcCCc----eeEec
Q 012746 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGIA----GEFLS 109 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~----~~~~~lvl~P~~~L~~q~~~~~~~~~~~----~~~~~ 109 (457)
+|+|+|.++++.+++++++++++|||+|||++++.++.. ..++++|++|+++|+.|+.+++++++.. ...+.
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~ 192 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIG 192 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECG
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEe
Confidence 699999999999999999999999999999999887765 3459999999999999999999986432 33333
Q ss_pred CCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHH
Q 012746 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (457)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~ 189 (457)
+....... .....+++++|++.+..... .....+++||+||||++.. ..+..+..
T Consensus 193 ~~~~~~~~---------~~~~~~I~i~T~~~l~~~~~-------~~~~~~~liIiDE~H~~~~---------~~~~~il~ 247 (510)
T 2oca_A 193 GGASKDDK---------YKNDAPVVVGTWQTVVKQPK-------EWFSQFGMMMNDECHLATG---------KSISSIIS 247 (510)
T ss_dssp GGCCTTGG---------GCTTCSEEEEEHHHHTTSCG-------GGGGGEEEEEEETGGGCCH---------HHHHHHGG
T ss_pred cCCccccc---------cccCCcEEEEeHHHHhhchh-------hhhhcCCEEEEECCcCCCc---------ccHHHHHH
Confidence 33221110 11347888888876544321 2234589999999999864 33455555
Q ss_pred hC-CCccEEEEeccCChhHHHHHHHHcCCCCCeEEecCC--------CCCceEEEEEEeC-----------chh------
Q 012746 190 YL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF--------NRPNLFYEVRYKD-----------LLD------ 243 (457)
Q Consensus 190 ~~-~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~~~~~~~-----------~~~------ 243 (457)
.+ +..++++||||++..... ......+..+..+.... ..+.......... ...
T Consensus 248 ~~~~~~~~l~lSATp~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (510)
T 2oca_A 248 GLNNCMFKFGLSGSLRDGKAN-IMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKII 326 (510)
T ss_dssp GCTTCCEEEEEESCGGGCSSC-HHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHH
T ss_pred hcccCcEEEEEEeCCCCCccc-HHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHH
Confidence 55 467899999999665322 11111111222221111 1111111111100 001
Q ss_pred ----hHHHHHHHHHHhc---CCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEe-
Q 012746 244 ----DAYADLCSVLKAN---GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT- 315 (457)
Q Consensus 244 ----~~~~~l~~~l~~~---~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT- 315 (457)
.+...+.+++... .+.++|||++ ...++.+++.|.+.+..+..+||+++..+|..+++.|++|+.+|||||
T Consensus 327 ~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~ 405 (510)
T 2oca_A 327 TGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASY 405 (510)
T ss_dssp HTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEH
T ss_pred hccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEc
Confidence 1222344444432 4555666666 888999999999998899999999999999999999999999999999
Q ss_pred ccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEec
Q 012746 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG 363 (457)
Q Consensus 316 ~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~ 363 (457)
+++++|+|+|++++||+++.|+++..|.||+||+||.|+.+..+++++
T Consensus 406 ~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 406 GVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred ChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999999999999999999999999999998775555554
No 42
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=2.3e-39 Score=324.96 Aligned_cols=291 Identities=18% Similarity=0.149 Sum_probs=215.1
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcCCCeEEEEcchHHHHHHHHHHHHHcCCc-eeEecCCCcHHH
Q 012746 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIA-GEFLSSTQTMQV 116 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~~~~~lvl~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~ 116 (457)
+|+|+|.++++.+++++++++.+|||+|||++|+.++...+.++||++|+++|+.||.+++..++.. ...+.+....
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-- 170 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-- 170 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC--
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC--
Confidence 5899999999999999999999999999999999998888899999999999999999999998887 6666655421
Q ss_pred HHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccE
Q 012746 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196 (457)
Q Consensus 117 ~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 196 (457)
..+++++|++.+ ....... ...+++||+||||++.+.+ |+ .+...++..++
T Consensus 171 -------------~~~Ivv~T~~~l------~~~~~~~-~~~~~liIvDEaH~~~~~~--~~-------~~~~~~~~~~~ 221 (472)
T 2fwr_A 171 -------------LKPLTVSTYDSA------YVNAEKL-GNRFMLLIFDEVHHLPAES--YV-------QIAQMSIAPFR 221 (472)
T ss_dssp -------------CCSEEEEEHHHH------HHTHHHH-TTTCSEEEEETGGGTTSTT--TH-------HHHHTCCCSEE
T ss_pred -------------cCCEEEEEcHHH------HHHHHHh-cCCCCEEEEECCcCCCChH--HH-------HHHHhcCCCeE
Confidence 245666655433 2222211 2348999999999998754 32 24556678889
Q ss_pred EEEeccCChhHHH--HHHHHcC---------------CCCCeEE--ecCCC-------------------CCceE-----
Q 012746 197 LALTATAAPKVQK--DVMESLC---------------LQNPLVL--KSSFN-------------------RPNLF----- 233 (457)
Q Consensus 197 v~lSAT~~~~~~~--~~~~~~~---------------~~~~~~~--~~~~~-------------------~~~i~----- 233 (457)
+++|||+...... .+...++ +..+... ..... ..++.
T Consensus 222 l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 301 (472)
T 2fwr_A 222 LGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAE 301 (472)
T ss_dssp EEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCS
T ss_pred EEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchh
Confidence 9999999742100 0111111 1111110 00000 00000
Q ss_pred -E-EE------EE---------------eCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecC
Q 012746 234 -Y-EV------RY---------------KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHA 290 (457)
Q Consensus 234 -~-~~------~~---------------~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~ 290 (457)
+ .. .. ......+...+.++++...++++||||++.+.++.+++.|. +..+||
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g 376 (472)
T 2fwr_A 302 DFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITH 376 (472)
T ss_dssp SSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCS
T ss_pred hHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeC
Confidence 0 00 00 00112466778888888888899999999999999999883 678999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCC-ceEEE--Eecc
Q 012746 291 GLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP-SKSLL--YYGM 364 (457)
Q Consensus 291 ~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~-g~~~~--~~~~ 364 (457)
+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|+|+..|.||+||+||.|+. +.+++ +++.
T Consensus 377 ~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~ 453 (472)
T 2fwr_A 377 RTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 453 (472)
T ss_dssp SSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999865 44443 4443
No 43
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=2.7e-37 Score=314.19 Aligned_cols=317 Identities=18% Similarity=0.141 Sum_probs=211.7
Q ss_pred HHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc---CCCeEEEEcchHHHHHHHHHHHHH----cCC
Q 012746 31 RWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE----KGI 103 (457)
Q Consensus 31 ~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~---~~~~~lvl~P~~~L~~q~~~~~~~----~~~ 103 (457)
...+|. .|+|+|..+++.++.|+ ++.++||+|||++|.+|++. .+..++|++||++||.|..+.+.. +|+
T Consensus 68 ~R~lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl 144 (853)
T 2fsf_A 68 KRVFGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGL 144 (853)
T ss_dssp HHHHSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHcCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCC
Confidence 334676 69999999999999998 99999999999999999874 367899999999999998887765 578
Q ss_pred ceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhH-HH-HHhh-------hhcCCccEEEEecccccc-cc
Q 012746 104 AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM-SK-LKKI-------HSRGLLNLVAIDEAHCIS-SW 173 (457)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~-~~-l~~~-------~~~~~l~~lViDEah~~~-~~ 173 (457)
.+..+.++.........+ .++| +++||+++ .+ +... ..++.+.++|+||||.++ +.
T Consensus 145 ~v~~i~GG~~~~~r~~~~--------~~dI------vvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~ 210 (853)
T 2fsf_A 145 TVGINLPGMPAPAKREAY--------AADI------TYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDE 210 (853)
T ss_dssp CEEECCTTCCHHHHHHHH--------HSSE------EEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTT
T ss_pred eEEEEeCCCCHHHHHHhc--------CCCE------EEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhc
Confidence 887777776654332221 1344 56666665 22 2222 345679999999999998 44
Q ss_pred CCC----------CHHHHHHHHHHHHhCC---------------------CccEE------------------------E
Q 012746 174 GHD----------FRPSYRKLSSLRNYLP---------------------DVPIL------------------------A 198 (457)
Q Consensus 174 ~~~----------~~~~~~~l~~~~~~~~---------------------~~~~v------------------------~ 198 (457)
+.. -...|..+..+...++ +.++. +
T Consensus 211 a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~L 290 (853)
T 2fsf_A 211 ARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESL 290 (853)
T ss_dssp TTCEEEEEEC----------------------------------------------------------------------
T ss_pred CcccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccc
Confidence 310 0011233333333333 22322 6
Q ss_pred EeccCChh---HHHHHHH-H-cC-------------------------------CCCC----------------------
Q 012746 199 LTATAAPK---VQKDVME-S-LC-------------------------------LQNP---------------------- 220 (457)
Q Consensus 199 lSAT~~~~---~~~~~~~-~-~~-------------------------------~~~~---------------------- 220 (457)
+|||.+.. +...+.. . +. +..+
T Consensus 291 fsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~q 370 (853)
T 2fsf_A 291 YSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQ 370 (853)
T ss_dssp ------------------------------------------------------------------CCCCCEEEEEEEHH
T ss_pred cCcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehH
Confidence 78886431 1000000 0 00 0000
Q ss_pred -----------------------------eEEecCCCCCceEEEE--EEeCchhhHHHHHHHHHHh--cCCccEEEEeCC
Q 012746 221 -----------------------------LVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKA--NGDTCAIVYCLE 267 (457)
Q Consensus 221 -----------------------------~~~~~~~~~~~i~~~~--~~~~~~~~~~~~l~~~l~~--~~~~~~iIf~~s 267 (457)
.++..+.++|...... .......+|+..+.+.++. ..+.++||||+|
T Consensus 371 nyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~s 450 (853)
T 2fsf_A 371 NYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTIS 450 (853)
T ss_dssp HHHTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred HHHhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECc
Confidence 0011112222221110 1112335788888888765 356789999999
Q ss_pred cccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCc--------------------
Q 012746 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV-------------------- 327 (457)
Q Consensus 268 ~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v-------------------- 327 (457)
++.++.++..|++.|+++..+||++.+.++..+.+.|+.| .|+|||++++||+||+..
T Consensus 451 ie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~ 528 (853)
T 2fsf_A 451 IEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEK 528 (853)
T ss_dssp HHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHH
Confidence 9999999999999999999999999999998888888888 599999999999999973
Q ss_pred -----------------cEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccch
Q 012746 328 -----------------RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (457)
Q Consensus 328 -----------------~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~ 366 (457)
.+||+|+.|.|...|.||+||+||.|.+|.+++|++..|
T Consensus 529 ~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 529 IKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred HHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccH
Confidence 699999999999999999999999999999999998766
No 44
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=9.9e-40 Score=335.48 Aligned_cols=287 Identities=13% Similarity=0.082 Sum_probs=200.7
Q ss_pred CCCHHHH-----HHHHHHH------cCCCEEEEcCCCchhhHHHHHhhhc----CCCeEEEEcchHHHHHHHHHHHHHcC
Q 012746 38 QFRDKQL-----DAIQAVL------SGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKG 102 (457)
Q Consensus 38 ~~~~~Q~-----~~i~~~~------~~~~~lv~a~TGsGKT~~~~l~~l~----~~~~~lvl~P~~~L~~q~~~~~~~~~ 102 (457)
.|+++|+ ++++.++ +++++++++|||+|||++|+++++. .+.+++|++||++|+.|+.+.++.++
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~~~ 294 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGLP 294 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSC
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhcCC
Confidence 8999999 9999888 8999999999999999999888874 36799999999999999999988764
Q ss_pred CceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCccc---Cch-hHHHHHhhhhcCCccEEEEeccccccccCCCCH
Q 012746 103 IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA---TPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 178 (457)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~---t~~-~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~ 178 (457)
+... ... .. .++||..+. +.+ ....+.....+.++++||+||||++.. .+.
T Consensus 295 i~~~--~~~-------------------l~-~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~---~~~ 349 (673)
T 2wv9_A 295 VRYL--TPA-------------------VQ-REHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDP---ASI 349 (673)
T ss_dssp CEEC--CC-----------------------CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCH---HHH
T ss_pred eeee--ccc-------------------cc-ccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCc---cHH
Confidence 4311 000 00 033343221 222 222333334567799999999999721 111
Q ss_pred HHHHHHHHHHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCCceEEEEEEeCchhhHHHHHHHHHHhcCC
Q 012746 179 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258 (457)
Q Consensus 179 ~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~ 258 (457)
.....+..+.. .++.++++||||+++.... ......+...... ... ......+...+.. .+
T Consensus 350 ~~~~~l~~~~~-~~~~~vl~~SAT~~~~i~~----~~~~~~~i~~v~~----------~~~---~~~~~~~l~~l~~-~~ 410 (673)
T 2wv9_A 350 AARGYIATRVE-AGEAAAIFMTATPPGTSDP----FPDTNSPVHDVSS----------EIP---DRAWSSGFEWITD-YA 410 (673)
T ss_dssp HHHHHHHHHHH-TTSCEEEEECSSCTTCCCS----SCCCSSCEEEEEC----------CCC---SSCCSSCCHHHHS-CC
T ss_pred HHHHHHHHhcc-ccCCcEEEEcCCCChhhhh----hcccCCceEEEee----------ecC---HHHHHHHHHHHHh-CC
Confidence 22222333322 2578999999999876321 1111111111000 000 0111112233333 46
Q ss_pred ccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEE------
Q 012746 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH------ 332 (457)
Q Consensus 259 ~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~------ 332 (457)
+++||||++++.++.+++.|++.++.+..+||+ +|..+++.|++|+.+|||||+++++|||+| +++||+
T Consensus 411 ~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~ 485 (673)
T 2wv9_A 411 GKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVK 485 (673)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECC
T ss_pred CCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCccc
Confidence 789999999999999999999999999999994 788999999999999999999999999999 999998
Q ss_pred --------------ecCCCCHHHHHHHhcccCCC-CCCceEEEEe---ccchHHHHHHH
Q 012746 333 --------------FNIPKSMEAFYQESGRAGRD-QLPSKSLLYY---GMDDRRRMEFI 373 (457)
Q Consensus 333 --------------~~~p~s~~~~~Qr~GRagR~-g~~g~~~~~~---~~~~~~~~~~i 373 (457)
|+.|.+.++|+||+||+||. |+.|.|++|+ ++.+...++.+
T Consensus 486 p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~i 544 (673)
T 2wv9_A 486 PTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWT 544 (673)
T ss_dssp EEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHH
T ss_pred ceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHH
Confidence 56899999999999999999 7899999996 45554433333
No 45
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=1.5e-36 Score=308.90 Aligned_cols=320 Identities=17% Similarity=0.128 Sum_probs=232.1
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc---CCCeEEEEcchHHHHHHHHHHHHH----c
Q 012746 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE----K 101 (457)
Q Consensus 29 ~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~---~~~~~lvl~P~~~L~~q~~~~~~~----~ 101 (457)
+.+..+|+ .|+|+|..+++.+++|+ ++.++||+|||++|.+|++. .+..++|++||++||.|..+.+.. +
T Consensus 103 a~~R~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~l 179 (922)
T 1nkt_A 103 AAWRVLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFL 179 (922)
T ss_dssp HHHHHHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 34445799 79999999999999998 99999999999999999863 377899999999999988877665 5
Q ss_pred CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhH--HHHHh-------hhhcCCccEEEEecccccc-
Q 012746 102 GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM--SKLKK-------IHSRGLLNLVAIDEAHCIS- 171 (457)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~--~~l~~-------~~~~~~l~~lViDEah~~~- 171 (457)
|+.+..+.++.....+...+. ++|+ ++||+.+ ..+.+ ...++.+.++||||||.++
T Consensus 180 GLsv~~i~gg~~~~~r~~~y~--------~DIv------ygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLi 245 (922)
T 1nkt_A 180 GLQVGVILATMTPDERRVAYN--------ADIT------YGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILI 245 (922)
T ss_dssp TCCEEECCTTCCHHHHHHHHH--------SSEE------EEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHT
T ss_pred CCeEEEEeCCCCHHHHHHhcC--------CCEE------EECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHH
Confidence 888888877776544333221 4554 4555554 22222 2345668999999999997
Q ss_pred ccCC----------CCHHHHHHHHHHHHhCC----------CccEE-----------------EEeccCChh---HHHHH
Q 012746 172 SWGH----------DFRPSYRKLSSLRNYLP----------DVPIL-----------------ALTATAAPK---VQKDV 211 (457)
Q Consensus 172 ~~~~----------~~~~~~~~l~~~~~~~~----------~~~~v-----------------~lSAT~~~~---~~~~~ 211 (457)
+.+. .-...|..+..+...++ +.++. ++|||.+.. +...+
T Consensus 246 DeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL 325 (922)
T 1nkt_A 246 DEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNAL 325 (922)
T ss_dssp TGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHH
T ss_pred hcCccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHH
Confidence 4321 11345677777787775 34565 778987642 11111
Q ss_pred HH-HcCCCC-------C-eE------------------------------------------------------------
Q 012746 212 ME-SLCLQN-------P-LV------------------------------------------------------------ 222 (457)
Q Consensus 212 ~~-~~~~~~-------~-~~------------------------------------------------------------ 222 (457)
.. .+...+ . ++
T Consensus 326 ~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa 405 (922)
T 1nkt_A 326 KAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTA 405 (922)
T ss_dssp HHHHHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCC
T ss_pred HHHHHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCc
Confidence 11 111000 0 00
Q ss_pred ---------------EecCCCCCceEEEE--EEeCchhhHHHHHHHHHHh--cCCccEEEEeCCcccHHHHHHHHHhCCC
Q 012746 223 ---------------LKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGI 283 (457)
Q Consensus 223 ---------------~~~~~~~~~i~~~~--~~~~~~~~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~g~ 283 (457)
+..+.++|...... .......+|+..+.+.+.. ..+.++||||+|++.++.++..|++.|+
T Consensus 406 ~te~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi 485 (922)
T 1nkt_A 406 QTEAAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRI 485 (922)
T ss_dssp GGGHHHHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCC
Confidence 01111112111100 0112235688888887754 3567899999999999999999999999
Q ss_pred ceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCc------------------------------------
Q 012746 284 SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV------------------------------------ 327 (457)
Q Consensus 284 ~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v------------------------------------ 327 (457)
++..+||+..+.++..+.+.|+.| .|+|||++++||+||+..
T Consensus 486 ~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (922)
T 1nkt_A 486 PHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIV 563 (922)
T ss_dssp CCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHH
T ss_pred CEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHH
Confidence 999999999888888888888877 699999999999999975
Q ss_pred ----------------cEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchH
Q 012746 328 ----------------RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (457)
Q Consensus 328 ----------------~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~ 367 (457)
.+||+|+.|.|...|.||+||+||.|.+|.+++|++..|.
T Consensus 564 ~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 564 KEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 5999999999999999999999999999999999987664
No 46
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=2.2e-39 Score=320.18 Aligned_cols=277 Identities=13% Similarity=0.091 Sum_probs=186.8
Q ss_pred HHcCCCEEEEcCCCchhhHHHHHhhhc----CCCeEEEEcchHHHHHHHHHHHHHcCCceeEecCCCcHHHHHHHHHHhh
Q 012746 50 VLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLD 125 (457)
Q Consensus 50 ~~~~~~~lv~a~TGsGKT~~~~l~~l~----~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (457)
+++|+++++++|||||||++|++|++. .+.+++|++||++|+.|+++.++.+++.. ....
T Consensus 5 l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~~~v~~--~~~~-------------- 68 (440)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVKF--HTQA-------------- 68 (440)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCEEE--ESSC--------------
T ss_pred hhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhcCCeEE--eccc--------------
Confidence 457899999999999999999888775 36799999999999999999988654321 1000
Q ss_pred cCCCcccEEEECCCccc---Cchh-HHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEec
Q 012746 126 SGKPSLRLLYVTPELTA---TPGF-MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201 (457)
Q Consensus 126 ~~~~~~~i~~~t~~~i~---t~~~-~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSA 201 (457)
.. .++||..+. +.+. ...+.+...+.++++||+||+|++ +.+ +...+..+..+.. .++.++++|||
T Consensus 69 -----~~-~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~--~~~~~~~~~~~~~-~~~~~~l~~SA 138 (440)
T 1yks_A 69 -----FS-AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPA--SIAARGWAAHRAR-ANESATILMTA 138 (440)
T ss_dssp -----CC-CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHH--HHHHHHHHHHHHH-TTSCEEEEECS
T ss_pred -----ce-eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-Ccc--hHHHHHHHHHHhc-cCCceEEEEeC
Confidence 00 134443222 1111 112222334677999999999998 211 2222333333332 35789999999
Q ss_pred cCChhHHHHHHHHcCCCCCeEEecCCCCCceEEEEEEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhC
Q 012746 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG 281 (457)
Q Consensus 202 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~ 281 (457)
|+++.... ......+...... ... ......+...+... ++++||||++++.++.+++.|++.
T Consensus 139 T~~~~~~~----~~~~~~~~~~~~~----------~~~---~~~~~~~~~~l~~~-~~~~lVF~~s~~~a~~l~~~L~~~ 200 (440)
T 1yks_A 139 TPPGTSDE----FPHSNGEIEDVQT----------DIP---SEPWNTGHDWILAD-KRPTAWFLPSIRAANVMAASLRKA 200 (440)
T ss_dssp SCTTCCCS----SCCCSSCEEEEEC----------CCC---SSCCSSSCHHHHHC-CSCEEEECSCHHHHHHHHHHHHHT
T ss_pred CCCchhhh----hhhcCCCeeEeee----------ccC---hHHHHHHHHHHHhc-CCCEEEEeCCHHHHHHHHHHHHHc
Confidence 99877432 1111111111000 000 00011122233332 568999999999999999999999
Q ss_pred CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEE-------------------ecCCCCHHHH
Q 012746 282 GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH-------------------FNIPKSMEAF 342 (457)
Q Consensus 282 g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~-------------------~~~p~s~~~~ 342 (457)
|+.+..+|| ++|..+++.|++|+.+|||||+++++|+|+| +++||+ ++.|.+..+|
T Consensus 201 ~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~ 275 (440)
T 1yks_A 201 GKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSA 275 (440)
T ss_dssp TCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHH
T ss_pred CCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHH
Confidence 999999999 3688899999999999999999999999999 999986 8999999999
Q ss_pred HHHhcccCCC-CCCceEEEEe---ccchHHHHHHHHH
Q 012746 343 YQESGRAGRD-QLPSKSLLYY---GMDDRRRMEFILS 375 (457)
Q Consensus 343 ~Qr~GRagR~-g~~g~~~~~~---~~~~~~~~~~i~~ 375 (457)
+||+||+||. |+.|.|++++ ++.+...++.+..
T Consensus 276 ~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~ 312 (440)
T 1yks_A 276 AQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEA 312 (440)
T ss_dssp HHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHH
T ss_pred HHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhH
Confidence 9999999997 6899999996 5666555555544
No 47
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=7.8e-37 Score=314.60 Aligned_cols=295 Identities=18% Similarity=0.190 Sum_probs=189.6
Q ss_pred CCCHHHHHHHHHHHc----C-CCEEEEcCCCchhhHHHHHhhh---c---------CCCeEEEEcchHHHHHHHH-HHHH
Q 012746 38 QFRDKQLDAIQAVLS----G-RDCFCLMPTGGGKSMCYQIPAL---A---------KPGIVLVVSPLIALMENQV-IGLK 99 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~----~-~~~lv~a~TGsGKT~~~~l~~l---~---------~~~~~lvl~P~~~L~~q~~-~~~~ 99 (457)
.|+|+|.++++.+++ + +++++++|||+|||++++..+. . ..+++||++|+++|+.|+. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 699999999999875 4 5689999999999998764432 1 4589999999999999999 7888
Q ss_pred HcCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHH
Q 012746 100 EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 179 (457)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~ 179 (457)
.++.....+.... .....+++++|++.+.................+++||+||||++...+.
T Consensus 258 ~~~~~~~~~~~~~--------------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~---- 319 (590)
T 3h1t_A 258 PFGDARHKIEGGK--------------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDN---- 319 (590)
T ss_dssp TTCSSEEECCC----------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC-----------
T ss_pred hcchhhhhhhccC--------------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccch----
Confidence 7776554443211 1234688888887665432111112233345689999999999865321
Q ss_pred HHHHHHHHHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEe------cCCCCCceEEEEEEe--------------
Q 012746 180 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLK------SSFNRPNLFYEVRYK-------------- 239 (457)
Q Consensus 180 ~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~~~~~-------------- 239 (457)
..+..+...+++.++++|||||...........++... ..+. .....+.....+...
T Consensus 320 --~~~~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~~~~-~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (590)
T 3h1t_A 320 --SNWREILEYFEPAFQIGMTATPLREDNRDTYRYFGNPI-YTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVD 396 (590)
T ss_dssp ----CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHSCSCS-EEECHHHHHHHTSSCCEEEEEEEETTCC-----------
T ss_pred --HHHHHHHHhCCcceEEEeccccccccchhHHHHcCCce-EecCHHHHhhCCccCCcEEEEeeeeeecccccccccccc
Confidence 34455667778889999999998765555555544211 0000 001111111111100
Q ss_pred -------------Cch----------hhHHHHHHHHHHh-cCCccEEEEeCCcccHHHHHHHHHhCCC--------ceEe
Q 012746 240 -------------DLL----------DDAYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAGGI--------SCAA 287 (457)
Q Consensus 240 -------------~~~----------~~~~~~l~~~l~~-~~~~~~iIf~~s~~~~~~l~~~L~~~g~--------~~~~ 287 (457)
... ......+.++++. ...+++||||+++.+++.+++.|.+.+. .+..
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~ 476 (590)
T 3h1t_A 397 RFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVAR 476 (590)
T ss_dssp ------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEE
T ss_pred ccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEE
Confidence 000 0111234444444 3457899999999999999999987543 2678
Q ss_pred ecCCCCHHHHHHHHHHHhcCCce---EEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCC
Q 012746 288 YHAGLNDKARSSVLDDWISSRKQ---VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 354 (457)
Q Consensus 288 ~~~~~~~~~r~~~~~~f~~g~~~---vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~ 354 (457)
+||++++ +|..++++|++|+.+ |||||+++++|+|+|++++||++++|+|+..|+||+||+||.+.
T Consensus 477 i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 477 VTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp CSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred EeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 8998754 799999999998766 88999999999999999999999999999999999999999875
No 48
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=4e-37 Score=321.94 Aligned_cols=327 Identities=16% Similarity=0.123 Sum_probs=234.2
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHc-CCCEEEEcCCCchhhHHHHHhhh--c----C--CCeEEE
Q 012746 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCYQIPAL--A----K--PGIVLV 83 (457)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~-~~~~lv~a~TGsGKT~~~~l~~l--~----~--~~~~lv 83 (457)
....|+.+++++.+.+.++.. | ..|.+.|+++++.++. +++++++||||+|||.. +|++ . . +..+++
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r-~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtl--lp~ll~~~~~~~~~g~~ilv 145 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIR-R-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQ--IPQFVLFDEMPHLENTQVAC 145 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHH-T-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHH--HHHHHHHHHCGGGGTCEEEE
T ss_pred CCCCccccCCCHHHHHHHHHh-h-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHH--HHHHHHHhccccCCCceEEe
Confidence 356799999999999999985 6 6788899999988775 56799999999999982 3322 1 1 567999
Q ss_pred EcchHHHHHHHHHHHHH-cCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHH-HhhhhcCCccE
Q 012746 84 VSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIHSRGLLNL 161 (457)
Q Consensus 84 l~P~~~L~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l-~~~~~~~~l~~ 161 (457)
++|+++|+.|+.+++.. ++.......+.... .........++ +++|++.+... .....+.++++
T Consensus 146 l~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~--------~~~~~~~~~~I------~v~T~G~l~r~l~~~~~l~~~~~ 211 (773)
T 2xau_A 146 TQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIR--------FENKTSNKTIL------KYMTDGMLLREAMEDHDLSRYSC 211 (773)
T ss_dssp EESCHHHHHHHHHHHHHHTTCCBTTTEEEEET--------TEEECCTTCSE------EEEEHHHHHHHHHHSTTCTTEEE
T ss_pred cCchHHHHHHHHHHHHHHhCCchhheecceec--------cccccCCCCCE------EEECHHHHHHHHhhCccccCCCE
Confidence 99999999999887765 33322111100000 00001122344 44555554433 33445677999
Q ss_pred EEEecccc-ccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCCceEEEEEEeC
Q 012746 162 VAIDEAHC-ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD 240 (457)
Q Consensus 162 lViDEah~-~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 240 (457)
||+||+|. .++ ....+..+..+....++.+++++|||++.. .+..+++ ..+.+..... ...+...+....
T Consensus 212 lIlDEah~R~ld----~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~---~l~~~~~-~~~vi~v~gr-~~pv~~~~~~~~ 282 (773)
T 2xau_A 212 IILDEAHERTLA----TDILMGLLKQVVKRRPDLKIIIMSATLDAE---KFQRYFN-DAPLLAVPGR-TYPVELYYTPEF 282 (773)
T ss_dssp EEECSGGGCCHH----HHHHHHHHHHHHHHCTTCEEEEEESCSCCH---HHHHHTT-SCCEEECCCC-CCCEEEECCSSC
T ss_pred EEecCccccccc----hHHHHHHHHHHHHhCCCceEEEEeccccHH---HHHHHhc-CCCcccccCc-ccceEEEEecCC
Confidence 99999996 333 112234456666677889999999999754 3444443 2333322222 122222222111
Q ss_pred c---hhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHh-----------CCCceEeecCCCCHHHHHHHHHHHh-
Q 012746 241 L---LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSA-----------GGISCAAYHAGLNDKARSSVLDDWI- 305 (457)
Q Consensus 241 ~---~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~-----------~g~~~~~~~~~~~~~~r~~~~~~f~- 305 (457)
. ....+..+.+......++++||||+++.+++.+++.|.+ .++.+..+||++++++|..+++.|.
T Consensus 283 ~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~ 362 (773)
T 2xau_A 283 QRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPE 362 (773)
T ss_dssp CSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCC
T ss_pred chhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhccc
Confidence 1 123344555555555678999999999999999999985 5788999999999999999999999
Q ss_pred ----cCCceEEEEeccccccCCCCCccEEEEecC------------------CCCHHHHHHHhcccCCCCCCceEEEEec
Q 012746 306 ----SSRKQVVVATVAFGMGIDRKDVRLVCHFNI------------------PKSMEAFYQESGRAGRDQLPSKSLLYYG 363 (457)
Q Consensus 306 ----~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~------------------p~s~~~~~Qr~GRagR~g~~g~~~~~~~ 363 (457)
+|..+|||||+++++|||+|++++||+++. |.|..+|+||+|||||. .+|.|+.+++
T Consensus 363 ~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~ 441 (773)
T 2xau_A 363 SHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYT 441 (773)
T ss_dssp CSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSC
T ss_pred ccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEec
Confidence 999999999999999999999999999887 88999999999999999 7999999998
Q ss_pred cchH
Q 012746 364 MDDR 367 (457)
Q Consensus 364 ~~~~ 367 (457)
..+.
T Consensus 442 ~~~~ 445 (773)
T 2xau_A 442 EEAF 445 (773)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7665
No 49
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=5.5e-38 Score=312.03 Aligned_cols=272 Identities=14% Similarity=0.108 Sum_probs=185.0
Q ss_pred HHHHcCCCEEEEcCCCchhhHHHHHhhhc----CCCeEEEEcchHHHHHHHHHHHHHcCCceeEecCCCcHHHHHHHHHH
Q 012746 48 QAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYED 123 (457)
Q Consensus 48 ~~~~~~~~~lv~a~TGsGKT~~~~l~~l~----~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (457)
..+.+++++++++|||+|||++|++|++. .+.++||++||++|+.|+.+.+..+.+ ..........
T Consensus 16 ~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~~v--~~~~~~~~~~-------- 85 (459)
T 2z83_A 16 NMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALRGLPV--RYQTSAVQRE-------- 85 (459)
T ss_dssp GGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTTTSCE--EECC--------------
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhcCceE--eEEecccccC--------
Confidence 34556789999999999999999999875 578999999999999999999874322 2211111000
Q ss_pred hhcCCCcccEEEECCCcccCch-hHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEecc
Q 012746 124 LDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202 (457)
Q Consensus 124 ~~~~~~~~~i~~~t~~~i~t~~-~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT 202 (457)
..+...+ .+.|.+ ....+.....+.++++|||||||.+... +......+.. ....++.++++||||
T Consensus 86 ---~t~~~~i------~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~---~~~~~~~~~~-~~~~~~~~~il~SAT 152 (459)
T 2z83_A 86 ---HQGNEIV------DVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPA---SIAARGYIAT-KVELGEAAAIFMTAT 152 (459)
T ss_dssp -----CCCSE------EEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHH---HHHHHHHHHH-HHHTTSCEEEEECSS
T ss_pred ---CCCCcEE------EEEchHHHHHHhhccccccCCcEEEEECCccCCch---hhHHHHHHHH-HhccCCccEEEEEcC
Confidence 0011111 123333 2333444455778999999999984110 0000111111 223468999999999
Q ss_pred CChhHHHHHHHHcCCCCCeEEecCCCCCceEEEEEEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCC
Q 012746 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG 282 (457)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g 282 (457)
++..... ......+...... .........+..++... ++++||||+++..++.+++.|++.|
T Consensus 153 ~~~~~~~----~~~~~~pi~~~~~-------------~~~~~~~~~~~~~l~~~-~~~~LVF~~s~~~~~~l~~~L~~~g 214 (459)
T 2z83_A 153 PPGTTDP----FPDSNAPIHDLQD-------------EIPDRAWSSGYEWITEY-AGKTVWFVASVKMGNEIAMCLQRAG 214 (459)
T ss_dssp CTTCCCS----SCCCSSCEEEEEC-------------CCCSSCCSSCCHHHHHC-CSCEEEECSCHHHHHHHHHHHHHTT
T ss_pred CCcchhh----hccCCCCeEEecc-------------cCCcchhHHHHHHHHhc-CCCEEEEeCChHHHHHHHHHHHhcC
Confidence 9876321 1111223222110 00001111122333333 5689999999999999999999999
Q ss_pred CceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEE--------------------ecCCCCHHHH
Q 012746 283 ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH--------------------FNIPKSMEAF 342 (457)
Q Consensus 283 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~--------------------~~~p~s~~~~ 342 (457)
+.+..+|++ +|..+++.|++|+.+|||||+++++|+|+|+ ++||+ |+.|.|..+|
T Consensus 215 ~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~ 289 (459)
T 2z83_A 215 KKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASA 289 (459)
T ss_dssp CCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHH
T ss_pred CcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHH
Confidence 999999995 6778899999999999999999999999999 99999 7799999999
Q ss_pred HHHhcccCCCCC-CceEEEEeccc
Q 012746 343 YQESGRAGRDQL-PSKSLLYYGMD 365 (457)
Q Consensus 343 ~Qr~GRagR~g~-~g~~~~~~~~~ 365 (457)
+||+||+||.|+ +|.+++|+...
T Consensus 290 ~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 290 AQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHHHTTSSCCTTCCCEEEEECSCC
T ss_pred HHhccccCCCCCCCCeEEEEEccc
Confidence 999999999997 89999998774
No 50
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=9.9e-36 Score=319.49 Aligned_cols=314 Identities=16% Similarity=0.166 Sum_probs=221.0
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEcCCCchhhHHHHHhhhc---C--CCeEEEEcchHHHHHHHHHHHHH-cCCceeEec
Q 012746 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALA---K--PGIVLVVSPLIALMENQVIGLKE-KGIAGEFLS 109 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~l~~l~---~--~~~~lvl~P~~~L~~q~~~~~~~-~~~~~~~~~ 109 (457)
+|+|+|.+++..++.. .++++.++||+|||++++..+.. . .+++|||+|+ +|+.||.+++.+ ++.....+.
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~v~~ 231 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFALFD 231 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCEECC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEEEEc
Confidence 6899999999998864 47899999999999988765532 2 3489999999 999999999954 776665554
Q ss_pred CCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCc-hhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHH
Q 012746 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP-GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (457)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~-~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~ 188 (457)
+... ..............+++++|++.+... .....+ ....+++||+||||++...+......+..+..+.
T Consensus 232 ~~~~----~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l----~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~ 303 (968)
T 3dmq_A 232 DERY----AEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHL----CEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLA 303 (968)
T ss_dssp HHHH----HHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHH----HTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHH
T ss_pred cchh----hhhhhhcccccccCCEEEEcHHHHhhCHHHHHHh----hhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHh
Confidence 3221 111111112223468888888766442 222222 2345899999999999766544434455555554
Q ss_pred HhCCCccEEEEeccCChhHHHHHH---HHcCC----------------------------C-------------------
Q 012746 189 NYLPDVPILALTATAAPKVQKDVM---ESLCL----------------------------Q------------------- 218 (457)
Q Consensus 189 ~~~~~~~~v~lSAT~~~~~~~~~~---~~~~~----------------------------~------------------- 218 (457)
.. ..+++++||||......++. ..+.. .
T Consensus 304 ~~--~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~ 381 (968)
T 3dmq_A 304 EH--VPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQD 381 (968)
T ss_dssp TT--CSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTC
T ss_pred hc--CCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchh
Confidence 32 44699999998541111000 00000 0
Q ss_pred --------------------------------CCeEEec------CCCCCce-EEEEE----------------------
Q 012746 219 --------------------------------NPLVLKS------SFNRPNL-FYEVR---------------------- 237 (457)
Q Consensus 219 --------------------------------~~~~~~~------~~~~~~i-~~~~~---------------------- 237 (457)
....+.. .+..... .+.+.
T Consensus 382 ~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (968)
T 3dmq_A 382 IEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAE 461 (968)
T ss_dssp SSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGG
T ss_pred hHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhH
Confidence 0000000 0000000 00000
Q ss_pred ---------------------EeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHh-CCCceEeecCCCCHH
Q 012746 238 ---------------------YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSA-GGISCAAYHAGLNDK 295 (457)
Q Consensus 238 ---------------------~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~-~g~~~~~~~~~~~~~ 295 (457)
.......|...+.++++...++++||||+++..++.+++.|.. .|+++..+||++++.
T Consensus 462 ~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~ 541 (968)
T 3dmq_A 462 DRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSII 541 (968)
T ss_dssp GGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTT
T ss_pred HHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHH
Confidence 0011235778888888888888999999999999999999995 599999999999999
Q ss_pred HHHHHHHHHhcCC--ceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEe
Q 012746 296 ARSSVLDDWISSR--KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362 (457)
Q Consensus 296 ~r~~~~~~f~~g~--~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~ 362 (457)
+|..+++.|++|+ ++|||||+++++|+|+|++++||+||+|+++..|.||+||+||.|+.+.++++.
T Consensus 542 ~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~ 610 (968)
T 3dmq_A 542 ERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHV 610 (968)
T ss_dssp HHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEE
T ss_pred HHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEE
Confidence 9999999999998 999999999999999999999999999999999999999999999988665553
No 51
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=3.1e-37 Score=312.18 Aligned_cols=275 Identities=23% Similarity=0.231 Sum_probs=196.6
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcCCCeEEEEcchHHHHHHHHHHHHH-cCCceeEecCCCcHHH
Q 012746 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQV 116 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~~~~~lvl~P~~~L~~q~~~~~~~-~~~~~~~~~~~~~~~~ 116 (457)
.++++|.++++.+.++++++++||||+|||.+|.++++.++.+++|++|||+|+.|+.+++.+ ++.......+...
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~--- 293 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRT--- 293 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE---
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHCCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEe---
Confidence 366777777777778899999999999999999999999888999999999999999988765 4544443332221
Q ss_pred HHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC---C
Q 012746 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---D 193 (457)
Q Consensus 117 ~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~---~ 193 (457)
.....+++++| |+++. -.......++++|||||||.+.. + |... +..+....+ .
T Consensus 294 ----------~~~~~~IlV~T------PGrLl-~~~~l~l~~l~~lVlDEAH~l~~-~--~~~~---l~~Il~~l~~~~~ 350 (666)
T 3o8b_A 294 ----------ITTGAPVTYST------YGKFL-ADGGCSGGAYDIIICDECHSTDS-T--TILG---IGTVLDQAETAGA 350 (666)
T ss_dssp ----------ECCCCSEEEEE------HHHHH-HTTSCCTTSCSEEEETTTTCCSH-H--HHHH---HHHHHHHTTTTTC
T ss_pred ----------ccCCCCEEEEC------cHHHH-hCCCcccCcccEEEEccchhcCc-c--HHHH---HHHHHHhhhhcCC
Confidence 11224555554 55431 11233455699999999987632 2 4433 444555554 2
Q ss_pred ccEEEEeccCChhHHHHHHHHcCCCCCeEEe--cCCCCCceEEEEEEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccH
Q 012746 194 VPILALTATAAPKVQKDVMESLCLQNPLVLK--SSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTC 271 (457)
Q Consensus 194 ~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~ 271 (457)
..++++|||++... ....+.... ..... .+... ... .. ++...++++||||++++.+
T Consensus 351 ~llil~SAT~~~~i--------~~~~p~i~~v~~~~~~-~i~~~--~~~---~~-------l~~~~~~~vLVFv~Tr~~a 409 (666)
T 3o8b_A 351 RLVVLATATPPGSV--------TVPHPNIEEVALSNTG-EIPFY--GKA---IP-------IEAIRGGRHLIFCHSKKKC 409 (666)
T ss_dssp SEEEEEESSCTTCC--------CCCCTTEEEEECBSCS-SEEET--TEE---EC-------GGGSSSSEEEEECSCHHHH
T ss_pred ceEEEECCCCCccc--------ccCCcceEEEeecccc-hhHHH--Hhh---hh-------hhhccCCcEEEEeCCHHHH
Confidence 33788899998742 122222211 11111 11100 000 00 1233577899999999999
Q ss_pred HHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEE----------Eec-------
Q 012746 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC----------HFN------- 334 (457)
Q Consensus 272 ~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi----------~~~------- 334 (457)
+.+++.|++.|+.+..+||++++++ |.++..+|||||+++++|||+| +++|| |||
T Consensus 410 e~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl 481 (666)
T 3o8b_A 410 DELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTI 481 (666)
T ss_dssp HHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEE
T ss_pred HHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccccccccc
Confidence 9999999999999999999999865 4566679999999999999997 99988 677
Q ss_pred ----CCCCHHHHHHHhcccCCCCCCceEEEEeccchHHH
Q 012746 335 ----IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (457)
Q Consensus 335 ----~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~ 369 (457)
.|.+.++|+||+||+|| |++|. +.|+++.+...
T Consensus 482 ~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 482 ETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp EEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred ccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 89999999999999999 89999 88888766443
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=2.4e-36 Score=297.76 Aligned_cols=265 Identities=15% Similarity=0.084 Sum_probs=179.7
Q ss_pred cCCCEEEEcCCCchhhHHHHHhhh----cCCCeEEEEcchHHHHHHHHHHHHHcCCceeEecCCCcHHHHHHHHHHhhcC
Q 012746 52 SGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSG 127 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~l~~l----~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (457)
+|+++++++|||+|||++|+++++ ..+.+++|++||++|+.|+.+.+.. .......+... .. .
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~~--~~v~~~~~~~~---------~~--~ 67 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALRG--EPIRYMTPAVQ---------SE--R 67 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT--SCEEEC-------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhCC--CeEEEEecCcc---------cc--C
Confidence 478999999999999999988877 4577999999999999999988763 33332222110 00 0
Q ss_pred CCcccEEEECCCcccCchh-HHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCChh
Q 012746 128 KPSLRLLYVTPELTATPGF-MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (457)
Q Consensus 128 ~~~~~i~~~t~~~i~t~~~-~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~ 206 (457)
.+...+ .+.+.+. ...+.....+.++++||+||+|++..+ +......+..+. ..++.++++||||+++.
T Consensus 68 ~~~~~~------~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~---~~~~~~~l~~~~-~~~~~~~l~~SAT~~~~ 137 (431)
T 2v6i_A 68 TGNEIV------DFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPA---SVAARGYIETRV-SMGDAGAIFMTATPPGT 137 (431)
T ss_dssp -CCCSE------EEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHH---HHHHHHHHHHHH-HTTSCEEEEEESSCTTC
T ss_pred CCCceE------EEEchHHHHHHHhcCccccCCCEEEEeCCccCCcc---HHHHHHHHHHHh-hCCCCcEEEEeCCCCcc
Confidence 011111 1223332 233344445778999999999997321 222223333332 23579999999999875
Q ss_pred HHHHHHHHcCCCCCeEEecCCCCCceEEEEEEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceE
Q 012746 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCA 286 (457)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~ 286 (457)
... ......+... ...... ......+...+... ++++||||++++.++.+++.|++.++.+.
T Consensus 138 ~~~----~~~~~~~i~~----------~~~~~~---~~~~~~~~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~v~ 199 (431)
T 2v6i_A 138 TEA----FPPSNSPIID----------EETRIP---DKAWNSGYEWITEF-DGRTVWFVHSIKQGAEIGTCLQKAGKKVL 199 (431)
T ss_dssp CCS----SCCCSSCCEE----------EECCCC---SSCCSSCCHHHHSC-SSCEEEECSSHHHHHHHHHHHHHTTCCEE
T ss_pred hhh----hcCCCCceee----------ccccCC---HHHHHHHHHHHHcC-CCCEEEEeCCHHHHHHHHHHHHHcCCeEE
Confidence 311 0001111111 000000 11112233444443 56899999999999999999999999999
Q ss_pred eecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccE-----------------EEEecCCCCHHHHHHHhccc
Q 012746 287 AYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL-----------------VCHFNIPKSMEAFYQESGRA 349 (457)
Q Consensus 287 ~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~-----------------Vi~~~~p~s~~~~~Qr~GRa 349 (457)
.+||+ +|..+++.|++|+.+|||||+++++|+|+| +.. ||+++.|.+..+|+||+||+
T Consensus 200 ~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~ 274 (431)
T 2v6i_A 200 YLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRI 274 (431)
T ss_dssp EESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTS
T ss_pred EeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhcc
Confidence 99997 577899999999999999999999999999 544 68889999999999999999
Q ss_pred CCCCCCc-eEEEEe
Q 012746 350 GRDQLPS-KSLLYY 362 (457)
Q Consensus 350 gR~g~~g-~~~~~~ 362 (457)
||.|..+ .++++.
T Consensus 275 GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 275 GRNPEKLGDIYAYS 288 (431)
T ss_dssp SCCTTCCCCEEEEC
T ss_pred CCCCCCCCeEEEEc
Confidence 9998544 445554
No 53
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=3e-34 Score=293.94 Aligned_cols=291 Identities=15% Similarity=0.165 Sum_probs=201.3
Q ss_pred HHHHHcCCCEEEEcCCCchhhHHHHHhhhcCCCeEEEEcchHHHHHHHHHHHHHcCCceeEecCCCcHHHHHHHHHHhhc
Q 012746 47 IQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDS 126 (457)
Q Consensus 47 i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (457)
....++|++++++||||+|||..++..+. ..+..+|++|+++|+.|++++++..|..+..+.+.... ....
T Consensus 149 ~ar~l~rk~vlv~apTGSGKT~~al~~l~-~~~~gl~l~PtR~LA~Qi~~~l~~~g~~v~lltG~~~~--------iv~T 219 (677)
T 3rc3_A 149 DARAMQRKIIFHSGPTNSGKTYHAIQKYF-SAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERV--------TVQP 219 (677)
T ss_dssp HHHTSCCEEEEEECCTTSSHHHHHHHHHH-HSSSEEEEESSHHHHHHHHHHHHHTTCCEEEECSSCEE--------CCST
T ss_pred HHHhcCCCEEEEEcCCCCCHHHHHHHHHH-hcCCeEEEeCHHHHHHHHHHHHHhcCCcEEEEECCeeE--------EecC
Confidence 34456889999999999999985444443 34566999999999999999999998887766654321 0000
Q ss_pred CCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC--CccEEEEeccCC
Q 012746 127 GKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP--DVPILALTATAA 204 (457)
Q Consensus 127 ~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~--~~~~v~lSAT~~ 204 (457)
.....+++.+|++.+. ....+++|||||||++.+.+ +... +..+....+ +.+++++|||.
T Consensus 220 pGr~~~il~~T~e~~~------------l~~~v~lvVIDEaH~l~d~~--~g~~---~~~~l~~l~~~~i~il~~SAT~- 281 (677)
T 3rc3_A 220 NGKQASHVSCTVEMCS------------VTTPYEVAVIDEIQMIRDPA--RGWA---WTRALLGLCAEEVHLCGEPAAI- 281 (677)
T ss_dssp TCCCCSEEEEEGGGCC------------SSSCEEEEEECSGGGGGCTT--THHH---HHHHHHHCCEEEEEEEECGGGH-
T ss_pred CCcccceeEecHhHhh------------hcccCCEEEEecceecCCcc--chHH---HHHHHHccCccceEEEeccchH-
Confidence 0012445555544332 13447999999999997755 3333 333444444 67889999994
Q ss_pred hhHHHHHHHHcCCCCCeEEecCCCCCceEEEEEEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCc
Q 012746 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (457)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~ 284 (457)
.....+....+ ....+.......... .... .+ ..+.... ...+|||+++++++.+++.|.+.++.
T Consensus 282 -~~i~~l~~~~~--~~~~v~~~~r~~~l~--~~~~-----~l----~~l~~~~-~g~iIf~~s~~~ie~la~~L~~~g~~ 346 (677)
T 3rc3_A 282 -DLVMELMYTTG--EEVEVRDYKRLTPIS--VLDH-----AL----ESLDNLR-PGDCIVCFSKNDIYSVSRQIEIRGLE 346 (677)
T ss_dssp -HHHHHHHHHHT--CCEEEEECCCSSCEE--ECSS-----CC----CSGGGCC-TTEEEECSSHHHHHHHHHHHHHTTCC
T ss_pred -HHHHHHHHhcC--CceEEEEeeecchHH--HHHH-----HH----HHHHhcC-CCCEEEEcCHHHHHHHHHHHHhcCCC
Confidence 33344444432 222221111111111 1000 00 0111222 34589999999999999999999999
Q ss_pred eEeecCCCCHHHHHHHHHHHhc--CCceEEEEeccccccCCCCCccEEEEecC--------------CCCHHHHHHHhcc
Q 012746 285 CAAYHAGLNDKARSSVLDDWIS--SRKQVVVATVAFGMGIDRKDVRLVCHFNI--------------PKSMEAFYQESGR 348 (457)
Q Consensus 285 ~~~~~~~~~~~~r~~~~~~f~~--g~~~vLvaT~~~~~Gldip~v~~Vi~~~~--------------p~s~~~~~Qr~GR 348 (457)
+..+||+|++++|..+++.|++ |..+|||||+++++|||+ ++++||+++. |.|..+|+||+||
T Consensus 347 v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GR 425 (677)
T 3rc3_A 347 SAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGR 425 (677)
T ss_dssp CEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTT
T ss_pred eeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcC
Confidence 9999999999999999999999 889999999999999999 8999999999 7899999999999
Q ss_pred cCCCCCC---ceEEEEeccchHHHHHHHHHhcccCC
Q 012746 349 AGRDQLP---SKSLLYYGMDDRRRMEFILSKNQSKN 381 (457)
Q Consensus 349 agR~g~~---g~~~~~~~~~~~~~~~~i~~~~~~~~ 381 (457)
|||.|.. |.++.+ ...+...++.+........
T Consensus 426 AGR~g~~g~~G~v~~l-~~~d~~~~~~~~~~~~~~i 460 (677)
T 3rc3_A 426 AGRFSSRFKEGEVTTM-NHEDLSLLKEILKRPVDPI 460 (677)
T ss_dssp BTCTTSSCSSEEEEES-STTHHHHHHHHHHSCCCCC
T ss_pred CCCCCCCCCCEEEEEE-ecchHHHHHHHHhcCcchh
Confidence 9999965 555444 4556666677766554433
No 54
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=3e-34 Score=289.90 Aligned_cols=302 Identities=14% Similarity=0.123 Sum_probs=207.8
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEcCCCchhhHHHHHhhhc-----CCCeEEEEcchHHHHHHHHHHHHHcCC--cee
Q 012746 38 QFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKEKGI--AGE 106 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~l~~l~-----~~~~~lvl~P~~~L~~q~~~~~~~~~~--~~~ 106 (457)
+|+|+|.++++++. .++++++.++||+|||+.++..+.. ...++||++| .+|+.||.++++++.. ...
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~~~~v~ 115 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICP-LSVLKNWEEELSKFAPHLRFA 115 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCTTSCEE
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEcc-HHHHHHHHHHHHHHCCCceEE
Confidence 69999999998874 5788999999999999886543322 2468999999 5688999999998643 333
Q ss_pred EecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHH
Q 012746 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (457)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~ 186 (457)
...+.... ....+.+++++|++.+..... .....+++||+||||++.+.+. ....
T Consensus 116 ~~~g~~~~-----------~~~~~~~ivi~t~~~l~~~~~-------l~~~~~~~vIvDEaH~~kn~~~-------~~~~ 170 (500)
T 1z63_A 116 VFHEDRSK-----------IKLEDYDIILTTYAVLLRDTR-------LKEVEWKYIVIDEAQNIKNPQT-------KIFK 170 (500)
T ss_dssp ECSSSTTS-----------CCGGGSSEEEEEHHHHTTCHH-------HHTCCEEEEEEETGGGGSCTTS-------HHHH
T ss_pred EEecCchh-----------ccccCCcEEEeeHHHHhccch-------hcCCCcCEEEEeCccccCCHhH-------HHHH
Confidence 33322210 111236788888776655332 2233589999999999976442 2233
Q ss_pred HHHhCCCccEEEEeccCChhHHHHHHHHcCCC----------------------------------CCeEEecC------
Q 012746 187 LRNYLPDVPILALTATAAPKVQKDVMESLCLQ----------------------------------NPLVLKSS------ 226 (457)
Q Consensus 187 ~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~------ 226 (457)
....++..+++++||||..+...++...+.+- .+..+...
T Consensus 171 ~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~ 250 (500)
T 1z63_A 171 AVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAI 250 (500)
T ss_dssp HHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHH
T ss_pred HHHhhccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccch
Confidence 34445667789999999765444333221110 12222111
Q ss_pred -CCCCceEEEEEEeCc--------------------------------------------------------hhhHHHHH
Q 012746 227 -FNRPNLFYEVRYKDL--------------------------------------------------------LDDAYADL 249 (457)
Q Consensus 227 -~~~~~i~~~~~~~~~--------------------------------------------------------~~~~~~~l 249 (457)
...|........... ...|+..+
T Consensus 251 ~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l 330 (500)
T 1z63_A 251 INDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRT 330 (500)
T ss_dssp HTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHH
T ss_pred hhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHH
Confidence 112222222211110 01233444
Q ss_pred HHHHHh--cCCccEEEEeCCcccHHHHHHHHHhC-CCceEeecCCCCHHHHHHHHHHHhcC-Cce-EEEEeccccccCCC
Q 012746 250 CSVLKA--NGDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISS-RKQ-VVVATVAFGMGIDR 324 (457)
Q Consensus 250 ~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-vLvaT~~~~~Gldi 324 (457)
.++++. ..+.++|||+++...++.+++.|... |+.+..+||+++..+|..+++.|++| ..+ +|++|+++++|+|+
T Consensus 331 ~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl 410 (500)
T 1z63_A 331 MEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINL 410 (500)
T ss_dssp HHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCC
T ss_pred HHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCch
Confidence 455544 25678999999999999999999886 99999999999999999999999988 555 79999999999999
Q ss_pred CCccEEEEecCCCCHHHHHHHhcccCCCCCCceEE--EEeccc
Q 012746 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSL--LYYGMD 365 (457)
Q Consensus 325 p~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~--~~~~~~ 365 (457)
|.+++||++|+|+|+..|.||+||++|.|+.+.+. .++..+
T Consensus 411 ~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 411 TSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp TTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred hhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 99999999999999999999999999999877654 344544
No 55
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.7e-31 Score=274.41 Aligned_cols=368 Identities=12% Similarity=0.113 Sum_probs=228.3
Q ss_pred CCCHHHHHHHHHHH---------cCCCEEEEcCCCchhhHHHHHhhh---cC-------CCeEEEEcchHHHHHHHHHHH
Q 012746 38 QFRDKQLDAIQAVL---------SGRDCFCLMPTGGGKSMCYQIPAL---AK-------PGIVLVVSPLIALMENQVIGL 98 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~---------~~~~~lv~a~TGsGKT~~~~l~~l---~~-------~~~~lvl~P~~~L~~q~~~~~ 98 (457)
.|+|||.+++.++. .+...|+..+||+|||+.++..+. .. ..++|||+|+ +|+.||.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 69999999999875 345688999999999987654432 11 2469999997 8889999999
Q ss_pred HHcC---CceeEecCCCcHHHHHHHHHHhhcC--CCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEecccccccc
Q 012746 99 KEKG---IAGEFLSSTQTMQVKTKIYEDLDSG--KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (457)
Q Consensus 99 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~ 173 (457)
.++. .....+.++................ ....+++++|++.+ ...........+++||+||||++.+.
T Consensus 134 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l------~~~~~~l~~~~~~~vI~DEaH~ikn~ 207 (644)
T 1z3i_X 134 GKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETF------RLHAEVLHKGKVGLVICDEGHRLKNS 207 (644)
T ss_dssp HHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHH------HHHTTTTTTSCCCEEEETTGGGCCTT
T ss_pred HHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHH------HhhHHHhhcCCccEEEEECceecCCh
Confidence 8852 2233333333222222222211111 12345655555543 22223333456899999999999753
Q ss_pred CCCCHHHHHHHHHHHHhCCCccEEEEeccCChhHHHHHHHHcCC------------------------------------
Q 012746 174 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCL------------------------------------ 217 (457)
Q Consensus 174 ~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~------------------------------------ 217 (457)
. .........+.....+++||||-.+...++...+.+
T Consensus 208 ~-------~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~ 280 (644)
T 1z3i_X 208 D-------NQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAG 280 (644)
T ss_dssp C-------HHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHH
T ss_pred h-------hHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHH
Confidence 3 222223333456678999999865432111110000
Q ss_pred ----------CCCeEEecC-----CCCCceEEEEEEeC------------------------------------------
Q 012746 218 ----------QNPLVLKSS-----FNRPNLFYEVRYKD------------------------------------------ 240 (457)
Q Consensus 218 ----------~~~~~~~~~-----~~~~~i~~~~~~~~------------------------------------------ 240 (457)
-.+.+++.. ...|.....+....
T Consensus 281 ~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c 360 (644)
T 1z3i_X 281 EQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLC 360 (644)
T ss_dssp HHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHh
Confidence 000011000 00111111111000
Q ss_pred -----------------------------------chhhHHHHHHHHH---HhcCCccEEEEeCCcccHHHHHHHHHhCC
Q 012746 241 -----------------------------------LLDDAYADLCSVL---KANGDTCAIVYCLERTTCDELSAYLSAGG 282 (457)
Q Consensus 241 -----------------------------------~~~~~~~~l~~~l---~~~~~~~~iIf~~s~~~~~~l~~~L~~~g 282 (457)
....|+..+..++ +...+.++|||+++...++.++..|...|
T Consensus 361 ~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g 440 (644)
T 1z3i_X 361 NHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRR 440 (644)
T ss_dssp HCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCC
Confidence 0012222333333 33457899999999999999999999999
Q ss_pred CceEeecCCCCHHHHHHHHHHHhcCCce---EEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEE
Q 012746 283 ISCAAYHAGLNDKARSSVLDDWISSRKQ---VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSL 359 (457)
Q Consensus 283 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~ 359 (457)
+.+..+||+++.++|..++++|++|... +|++|+++++|+|++++++||+||+|+|+..+.|++||++|.|+...+.
T Consensus 441 ~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~ 520 (644)
T 1z3i_X 441 YLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCY 520 (644)
T ss_dssp CCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceE
Confidence 9999999999999999999999998654 8999999999999999999999999999999999999999999876544
Q ss_pred --EEeccc--hHHHHHHHHHhcccCCCCccchhhhhhHHHHHhHHHHHHHhhcCcchHHHHHhh
Q 012746 360 --LYYGMD--DRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILES 419 (457)
Q Consensus 360 --~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~r~~l~~~ 419 (457)
.++..+ |...+..+..+....................+++.++..+.++..|-....+++
T Consensus 521 v~~lv~~~tiEe~i~~~~~~K~~l~~~v~~~~~~~~~~~~~~~l~~Lf~~~~~~~~~t~~~~~c 584 (644)
T 1z3i_X 521 IYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVERHFSLGELRELFSLNEKTLSDTHDRFRC 584 (644)
T ss_dssp EEEEEETTSHHHHHHHHHHHHHHTSCCCCSCSSSCCCSSCHHHHHHHTCCCSSCSCHHHHHHTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHhcCcchhhcCCCHHHHHHHhCCCCCccchhhhhhhC
Confidence 345544 444444444443322211111111122333456666666666666665555444
No 56
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=8.7e-31 Score=261.19 Aligned_cols=178 Identities=18% Similarity=0.210 Sum_probs=140.2
Q ss_pred EEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCCceEEEE--EEeCchhhHHHHHHHHHHhc--CCccEEEEeCCcccH
Q 012746 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKAN--GDTCAIVYCLERTTC 271 (457)
Q Consensus 196 ~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~l~~~l~~~--~~~~~iIf~~s~~~~ 271 (457)
+.+||+|+..+. ..+.+..++. ++..+.++|...... .......+|...+.+.+... .+.++||||+|++.+
T Consensus 412 L~GMTGTa~te~-~Ef~~iY~l~---vv~IPtnkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~s 487 (822)
T 3jux_A 412 LAGMTGTAKTEE-SEFVQVYGME---VVVIPTHKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKS 487 (822)
T ss_dssp EEEEESSCGGGH-HHHHHHSCCC---EEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHH
T ss_pred HeEECCCCchHH-HHHHHHhCCe---EEEECCCCCcceeecCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHH
Confidence 789999998764 5566666543 444566666544332 22334467888888887753 567899999999999
Q ss_pred HHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCC--------CccEEEEecCCCCHHHHH
Q 012746 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK--------DVRLVCHFNIPKSMEAFY 343 (457)
Q Consensus 272 ~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip--------~v~~Vi~~~~p~s~~~~~ 343 (457)
+.++..|.+.|+++..+||+..++++..+.+.++.| .|+|||++++||+||+ +..+||+++.|.|...|.
T Consensus 488 E~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~ 565 (822)
T 3jux_A 488 ELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDN 565 (822)
T ss_dssp HHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHH
T ss_pred HHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHH
Confidence 999999999999999999997666666666666666 5999999999999998 567999999999999999
Q ss_pred HHhcccCCCCCCceEEEEeccch-------HHHHHHHHHhccc
Q 012746 344 QESGRAGRDQLPSKSLLYYGMDD-------RRRMEFILSKNQS 379 (457)
Q Consensus 344 Qr~GRagR~g~~g~~~~~~~~~~-------~~~~~~i~~~~~~ 379 (457)
||+||+||.|.+|.+++|++.+| -+.+..+.+....
T Consensus 566 qriGRTGRqG~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~~~ 608 (822)
T 3jux_A 566 QLRGRAGRQGDPGESIFFLSLEDDLLRIFGSEQIGKVMNILKI 608 (822)
T ss_dssp HHHTTSSCSSCCCEEEEEEETTSHHHHHTTHHHHHHHHHHSSC
T ss_pred HhhCccccCCCCeeEEEEechhHHHHHhhhHHHHHHHHHHcCC
Confidence 99999999999999999998876 2344455555443
No 57
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.3e-31 Score=281.71 Aligned_cols=327 Identities=18% Similarity=0.165 Sum_probs=219.9
Q ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCCchhhHHHHHhhh------cCCCeEEEEcchHHHHHHHHHHHHHcCCc--
Q 012746 37 AQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPAL------AKPGIVLVVSPLIALMENQVIGLKEKGIA-- 104 (457)
Q Consensus 37 ~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~l~~l------~~~~~~lvl~P~~~L~~q~~~~~~~~~~~-- 104 (457)
.+|+|||.+++.++. +++++++..+||+|||+.++..+. ...+++||||| .+|+.||.+++.++...
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~ 313 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPDLN 313 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTTCC
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCCce
Confidence 369999999998876 778999999999999987654332 23678999999 68889999999986433
Q ss_pred eeEecCCCcHHHHHHHHHHh------hcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCH
Q 012746 105 GEFLSSTQTMQVKTKIYEDL------DSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 178 (457)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~ 178 (457)
.....+.............. .......+++++|++.+... ........+++||+||||++...+
T Consensus 314 v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~------~~~l~~~~w~~vIvDEaH~lkn~~---- 383 (800)
T 3mwy_W 314 CICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKD------RAELGSIKWQFMAVDEAHRLKNAE---- 383 (800)
T ss_dssp EEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHT------HHHHHTSEEEEEEETTGGGGCCSS----
T ss_pred EEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhh------HHHHhcCCcceeehhhhhhhcCch----
Confidence 33333333222111111100 01223467888888766432 112223348999999999996544
Q ss_pred HHHHHHHHHHHhCCCccEEEEeccCChhHHHHHHHHcCCC-------------------------------CCeEEecC-
Q 012746 179 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ-------------------------------NPLVLKSS- 226 (457)
Q Consensus 179 ~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~- 226 (457)
.........+.....+++||||-.+...++...+.+- .+.+++..
T Consensus 384 ---s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k 460 (800)
T 3mwy_W 384 ---SSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLK 460 (800)
T ss_dssp ---SHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCG
T ss_pred ---hHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhH
Confidence 2333344445566789999999544333333322211 11111110
Q ss_pred ----CCCCceEEEEEEeCc-------------------------------------------------------------
Q 012746 227 ----FNRPNLFYEVRYKDL------------------------------------------------------------- 241 (457)
Q Consensus 227 ----~~~~~i~~~~~~~~~------------------------------------------------------------- 241 (457)
...|...........
T Consensus 461 ~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~ 540 (800)
T 3mwy_W 461 KDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDG 540 (800)
T ss_dssp GGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC---
T ss_pred HhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccc
Confidence 001111111111000
Q ss_pred -------------hhhHHHHHHHHHHh--cCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhc
Q 012746 242 -------------LDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306 (457)
Q Consensus 242 -------------~~~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~ 306 (457)
...|+..|.+++.. ..+.++|||+.....+..+...|...|+.+..+||+++..+|..+++.|++
T Consensus 541 ~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~ 620 (800)
T 3mwy_W 541 KMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNS 620 (800)
T ss_dssp -CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSS
T ss_pred cccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhC
Confidence 01244445555554 256789999999999999999999999999999999999999999999998
Q ss_pred CCc---eEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEE--EEeccc--hHHHHHHHHHhc
Q 012746 307 SRK---QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSL--LYYGMD--DRRRMEFILSKN 377 (457)
Q Consensus 307 g~~---~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~--~~~~~~--~~~~~~~i~~~~ 377 (457)
+.. .+|++|+++++|+|++.+++||+||+|+|+..+.||+||++|.|+...+. .+++.+ |...+....++.
T Consensus 621 ~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~ 698 (800)
T 3mwy_W 621 PDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKM 698 (800)
T ss_dssp TTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHT
T ss_pred CCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHH
Confidence 654 49999999999999999999999999999999999999999999876554 445554 555555544443
No 58
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=2.9e-28 Score=251.42 Aligned_cols=200 Identities=22% Similarity=0.282 Sum_probs=144.6
Q ss_pred cEEEEeccccccc-cCCCCHHHHHHHHHHHHhC-------------------CCccEEEEeccCChhHHHHHHHHcCCCC
Q 012746 160 NLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYL-------------------PDVPILALTATAAPKVQKDVMESLCLQN 219 (457)
Q Consensus 160 ~~lViDEah~~~~-~~~~~~~~~~~l~~~~~~~-------------------~~~~~v~lSAT~~~~~~~~~~~~~~~~~ 219 (457)
.+||+||+|++.+ |+..++........+.... ...+++++|||+++..... .
T Consensus 327 ~llVlDEah~~~~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~SAT~~~~~~~~-----~--- 398 (664)
T 1c4o_A 327 FLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVFVSATPGPFELAH-----S--- 398 (664)
T ss_dssp CEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSSCCCHHHHHHTCSEEEEEESSCCHHHHHH-----C---
T ss_pred cEEEEecccccHHHHHHHHHHHHHHHHHHHHccccchhhhhcCcccHHHHHhhcCCEEEEecCCCHHHHHh-----h---
Confidence 4789999998753 3222232222222222210 1467899999998764221 0
Q ss_pred CeEEecC-----CCCCceEEEEEEeCchhhHHHHHHHHHHh--cCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCC
Q 012746 220 PLVLKSS-----FNRPNLFYEVRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGL 292 (457)
Q Consensus 220 ~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~ 292 (457)
...+... ...+. ..+... ..+...+...+.. ..+.++||||+|+..++.+++.|.+.|+.+..+||++
T Consensus 399 ~~~~~~~~r~~~l~~p~--i~v~~~---~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~ 473 (664)
T 1c4o_A 399 GRVVEQIIRPTGLLDPL--VRVKPT---ENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHEL 473 (664)
T ss_dssp SEEEEECSCTTCCCCCE--EEEECS---TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTC
T ss_pred hCeeeeeeccCCCCCCe--EEEecc---cchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCC
Confidence 1111111 11121 222211 2333444444433 2567899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEecC-----CCCHHHHHHHhcccCCCCCCceEEEEeccchH
Q 012746 293 NDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI-----PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (457)
Q Consensus 293 ~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~-----p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~ 367 (457)
++.+|..+++.|++|+.+|||||+++++|+|+|++++||++|. |.|..+|+||+|||||.+ .|.++++++..+.
T Consensus 474 ~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~ 552 (664)
T 1c4o_A 474 DAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSE 552 (664)
T ss_dssp CHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCH
T ss_pred CHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCH
Confidence 9999999999999999999999999999999999999999997 899999999999999995 7999999988765
Q ss_pred HHHHHH
Q 012746 368 RRMEFI 373 (457)
Q Consensus 368 ~~~~~i 373 (457)
...+.+
T Consensus 553 ~~~~~i 558 (664)
T 1c4o_A 553 AMQRAI 558 (664)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544444
No 59
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.96 E-value=4.3e-29 Score=266.07 Aligned_cols=319 Identities=13% Similarity=0.073 Sum_probs=199.5
Q ss_pred HHHHHHHHHHhcC------CCCCCHHHHHHHHHHHc--------------CCCEEEEcCCCchhhHHHHHhh--hc---C
Q 012746 23 KEALVKLLRWHFG------HAQFRDKQLDAIQAVLS--------------GRDCFCLMPTGGGKSMCYQIPA--LA---K 77 (457)
Q Consensus 23 ~~~~~~~l~~~~g------~~~~~~~Q~~~i~~~~~--------------~~~~lv~a~TGsGKT~~~~l~~--l~---~ 77 (457)
.+.+...+....- ...|||+|.+|++.+++ +++++++++||||||++++..+ +. .
T Consensus 250 ~~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~~ 329 (1038)
T 2w00_A 250 KHTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDF 329 (1038)
T ss_dssp HHHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCTT
T ss_pred hHHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcCC
Confidence 3455566655221 12599999999999875 3689999999999999874322 11 1
Q ss_pred CCeEEEEcchHHHHHHHHHHHHHcCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhh----
Q 012746 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI---- 153 (457)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~---- 153 (457)
..++|||+|+++|+.|+.+.+..++... ......... ....+... ..+++++|+ +.+..+.+.
T Consensus 330 ~~rvLvlvpr~eL~~Q~~~~f~~f~~~~-v~~~~s~~~----l~~~L~~~--~~~IiVtTi------qkl~~~l~~~~~~ 396 (1038)
T 2w00_A 330 IDKVFFVVDRKDLDYQTMKEYQRFSPDS-VNGSENTAG----LKRNLDKD--DNKIIVTTI------QKLNNLMKAESDL 396 (1038)
T ss_dssp CCEEEEEECGGGCCHHHHHHHHTTSTTC-SSSSCCCHH----HHHHHHCS--SCCEEEEEH------HHHHHHHHHCCCC
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhcccc-cccccCHHH----HHHHhcCC--CCCEEEEEH------HHHHHHHhcccch
Confidence 3689999999999999999999875431 111111111 11222222 245555544 444433221
Q ss_pred hhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCChhHH----HHHHHHcCC------------
Q 012746 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ----KDVMESLCL------------ 217 (457)
Q Consensus 154 ~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~----~~~~~~~~~------------ 217 (457)
.......+||+||||++.. | .....+...+|+.++++|||||..... ......++-
T Consensus 397 ~~~~~~~lvIiDEAHrs~~-~-------~~~~~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~ 468 (1038)
T 2w00_A 397 PVYNQQVVFIFDECHRSQF-G-------EAQKNLKKKFKRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIR 468 (1038)
T ss_dssp GGGGSCEEEEEESCCTTHH-H-------HHHHHHHHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHH
T ss_pred hccccccEEEEEccchhcc-h-------HHHHHHHHhCCcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHh
Confidence 1234578999999999753 1 224556778899999999999975321 111222221
Q ss_pred ---CCCeEEecCCCCCceE---EEEE--------E--eCchhhHHHHHH----HHHHhc--------CCccEEEEeCCcc
Q 012746 218 ---QNPLVLKSSFNRPNLF---YEVR--------Y--KDLLDDAYADLC----SVLKAN--------GDTCAIVYCLERT 269 (457)
Q Consensus 218 ---~~~~~~~~~~~~~~i~---~~~~--------~--~~~~~~~~~~l~----~~l~~~--------~~~~~iIf~~s~~ 269 (457)
.-|..+......+... .... . .-........+. +..... .+.++||||+|+.
T Consensus 469 dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~ 548 (1038)
T 2w00_A 469 DEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVD 548 (1038)
T ss_dssp HTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHH
T ss_pred CCCcCCeEEEEEeccchhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHH
Confidence 1111110000000000 0000 0 000011222222 222211 3457999999999
Q ss_pred cHHHHHHHHHhCC------------Cce-EeecCC----------C----------CH----------------------
Q 012746 270 TCDELSAYLSAGG------------ISC-AAYHAG----------L----------ND---------------------- 294 (457)
Q Consensus 270 ~~~~l~~~L~~~g------------~~~-~~~~~~----------~----------~~---------------------- 294 (457)
.|..+++.|.+.+ +++ ..+|++ + ++
T Consensus 549 ~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~ 628 (1038)
T 2w00_A 549 AAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFS 628 (1038)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhccccc
Confidence 9999999998754 455 455542 2 22
Q ss_pred -------HHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCC----ceEEEEec
Q 012746 295 -------KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP----SKSLLYYG 363 (457)
Q Consensus 295 -------~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~----g~~~~~~~ 363 (457)
..|..++++|++|+++|||+|+++.+|+|+|.+ .++++|.|.+...|+|++||++|.+.. |.++.|..
T Consensus 629 ~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 629 TDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp SSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred ccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 147889999999999999999999999999999 678899999999999999999998753 55665554
No 60
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.96 E-value=1.2e-27 Score=203.79 Aligned_cols=151 Identities=21% Similarity=0.369 Sum_probs=137.3
Q ss_pred CCCCceEEEEEEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhc
Q 012746 227 FNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306 (457)
Q Consensus 227 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~ 306 (457)
...+++...+.... ...|+..|.++++..+++++||||+++..++.+++.|...|+.+..+||++++.+|..+++.|++
T Consensus 5 ~~~~~i~~~~~~~~-~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 83 (163)
T 2hjv_A 5 LTTRNIEHAVIQVR-EENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR 83 (163)
T ss_dssp -CCCCEEEEEEECC-GGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCcccceEEEEECC-hHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 34556665555544 36788999999998888899999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhcc
Q 012746 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (457)
Q Consensus 307 g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~ 378 (457)
|+.+|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|+.|.+++++.+.+...++.+.+...
T Consensus 84 g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~ 155 (163)
T 2hjv_A 84 GEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIG 155 (163)
T ss_dssp TSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred CCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999999999999999999988888876544
No 61
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.96 E-value=8.6e-28 Score=218.83 Aligned_cols=195 Identities=18% Similarity=0.241 Sum_probs=148.8
Q ss_pred ccccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc-----------CCC
Q 012746 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----------KPG 79 (457)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~-----------~~~ 79 (457)
......|+++++++.+.+.+.+ +||.+|+|+|.++++.+++|+++++.+|||+|||++|++|++. .++
T Consensus 25 p~~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~ 103 (242)
T 3fe2_A 25 PKPVLNFYEANFPANVMDVIAR-QNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGP 103 (242)
T ss_dssp CCCCSSTTTTTCCHHHHHHHHT-TTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCC
T ss_pred CCccCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCC
Confidence 3445779999999999999998 7999999999999999999999999999999999999999874 267
Q ss_pred eEEEEcchHHHHHHHHHHHHHc----CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh--h
Q 012746 80 IVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--I 153 (457)
Q Consensus 80 ~~lvl~P~~~L~~q~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~--~ 153 (457)
+++|++||++|+.|+.+.++.+ +.....+.++........... . ..+++++ ||+.+..+.. .
T Consensus 104 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~---~~~I~v~------Tp~~l~~~l~~~~ 171 (242)
T 3fe2_A 104 ICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---R---GVEICIA------TPGRLIDFLECGK 171 (242)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---H---CCSEEEE------CHHHHHHHHHHTS
T ss_pred EEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---C---CCCEEEE------CHHHHHHHHHcCC
Confidence 8999999999999999888774 666666666655444332222 1 1455554 5555544432 3
Q ss_pred hhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhC-CCccEEEEeccCChhHHHHHHHHcCCCCCeEEec
Q 012746 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS 225 (457)
Q Consensus 154 ~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~ 225 (457)
..+.++++||+||||++.++| |++.+. .+...+ ++.|++++|||+++.+.......+ .+|..+..
T Consensus 172 ~~~~~~~~lViDEah~l~~~~--~~~~~~---~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l--~~~~~i~~ 237 (242)
T 3fe2_A 172 TNLRRTTYLVLDEADRMLDMG--FEPQIR---KIVDQIRPDRQTLMWSATWPKEVRQLAEDFL--KDYIHINI 237 (242)
T ss_dssp CCCTTCCEEEETTHHHHHHTT--CHHHHH---HHHTTSCSSCEEEEEESCCCHHHHHHHHHHC--SSCEEEEE
T ss_pred CCcccccEEEEeCHHHHhhhC--cHHHHH---HHHHhCCccceEEEEEeecCHHHHHHHHHHC--CCCEEEEe
Confidence 346679999999999999988 665544 445555 478999999999999877665554 46665543
No 62
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.95 E-value=7.1e-28 Score=217.43 Aligned_cols=192 Identities=21% Similarity=0.302 Sum_probs=139.0
Q ss_pred cccccCCC-CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc------------CC
Q 012746 12 SQTQKNKP-LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------------KP 78 (457)
Q Consensus 12 ~~~~~~~~-~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~------------~~ 78 (457)
.....|++ +++++++.++|.+ +||.+|+|+|.++++.+++|+|+++.+|||+|||++|++|++. .+
T Consensus 16 ~p~~~f~~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~ 94 (228)
T 3iuy_A 16 KPTCRFKDAFQQYPDLLKSIIR-VGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNG 94 (228)
T ss_dssp CCCCSHHHHHTTCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CC
T ss_pred CChhhHhhhhccCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCC
Confidence 34455666 7899999999998 6999999999999999999999999999999999999998875 46
Q ss_pred CeEEEEcchHHHHHHHHHHHHHc---CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh--h
Q 012746 79 GIVLVVSPLIALMENQVIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--I 153 (457)
Q Consensus 79 ~~~lvl~P~~~L~~q~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~--~ 153 (457)
++++|++|+++|+.|+.+.++.+ +.......++...... ...+.. ..+++++| |+.+..+.. .
T Consensus 95 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~iiv~T------p~~l~~~~~~~~ 162 (228)
T 3iuy_A 95 PGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQ---IEDISK---GVDIIIAT------PGRLNDLQMNNS 162 (228)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------C---HHHHHS---CCSEEEEC------HHHHHHHHHTTC
T ss_pred CcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHH---HHHhcC---CCCEEEEC------HHHHHHHHHcCC
Confidence 78999999999999999999986 3444444433322211 111211 14555554 555444422 2
Q ss_pred hhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEE
Q 012746 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (457)
Q Consensus 154 ~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~ 223 (457)
..+.++++||+||||++.+++ |+..+..+ ....+ +.+++++|||+++...+.... .+.+|..+
T Consensus 163 ~~~~~~~~lViDEah~~~~~~--~~~~~~~i---~~~~~~~~~~l~~SAT~~~~~~~~~~~--~l~~p~~i 226 (228)
T 3iuy_A 163 VNLRSITYLVIDEADKMLDME--FEPQIRKI---LLDVRPDRQTVMTSATWPDTVRQLALS--YLKDPMIV 226 (228)
T ss_dssp CCCTTCCEEEECCHHHHHHTT--CHHHHHHH---HHHSCSSCEEEEEESCCCHHHHHHHHT--TCSSCEEE
T ss_pred cCcccceEEEEECHHHHhccc--hHHHHHHH---HHhCCcCCeEEEEEeeCCHHHHHHHHH--HCCCCEEE
Confidence 345678999999999999887 66555444 44444 789999999999998774444 34556544
No 63
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.95 E-value=1.2e-26 Score=239.28 Aligned_cols=128 Identities=22% Similarity=0.328 Sum_probs=112.9
Q ss_pred HHHHHHHHHHh--cCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccC
Q 012746 245 AYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (457)
Q Consensus 245 ~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gl 322 (457)
....+...+.. ..+.++||||+|+..++.+++.|.+.|+++..+||++++.+|..+++.|++|+.+|||||+++++|+
T Consensus 430 ~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~Gl 509 (661)
T 2d7d_A 430 QIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGL 509 (661)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTC
T ss_pred hHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCc
Confidence 33444444433 2467899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEecC-----CCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHH
Q 012746 323 DRKDVRLVCHFNI-----PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373 (457)
Q Consensus 323 dip~v~~Vi~~~~-----p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i 373 (457)
|+|++++||+++. |.|..+|+||+||+||. ..|.+++++++.+....+.+
T Consensus 510 Dip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i 564 (661)
T 2d7d_A 510 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIAI 564 (661)
T ss_dssp CCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHHH
T ss_pred ccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHHH
Confidence 9999999999997 99999999999999998 68999999988765544433
No 64
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.95 E-value=1.4e-27 Score=214.07 Aligned_cols=196 Identities=17% Similarity=0.229 Sum_probs=143.4
Q ss_pred ccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC------CCeEEEEcchH
Q 012746 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (457)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~------~~~~lvl~P~~ 88 (457)
..|+++++++.+.+++++ +|+.+|+|+|.++++.+++|+++++.+|||+|||++|+++++.. +.+++|++|++
T Consensus 4 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 82 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKT-LRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTR 82 (219)
T ss_dssp CCGGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcH
Confidence 458899999999999997 79999999999999999999999999999999999999998753 56899999999
Q ss_pred HHHHHHHHHHHHc--------CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh--hhhcCC
Q 012746 89 ALMENQVIGLKEK--------GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGL 158 (457)
Q Consensus 89 ~L~~q~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~--~~~~~~ 158 (457)
+|+.|+.+.++.+ +.......++..... .........+++++|| +.+..+.. ......
T Consensus 83 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~------~~~~~~~~~~Iiv~Tp------~~l~~~l~~~~~~~~~ 150 (219)
T 1q0u_A 83 ELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQK------ALEKLNVQPHIVIGTP------GRINDFIREQALDVHT 150 (219)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHH------TTCCCSSCCSEEEECH------HHHHHHHHTTCCCGGG
T ss_pred HHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHH------HHHHcCCCCCEEEeCH------HHHHHHHHcCCCCcCc
Confidence 9999999998875 334444444432211 1111112345655554 44444322 223456
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCC
Q 012746 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP 230 (457)
Q Consensus 159 l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (457)
++++|+||||++.+++ |. ..+..+...++ +.+++++|||++++..+.+... +.+|..+.....++
T Consensus 151 ~~~lViDEah~~~~~~--~~---~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~--~~~p~~~~~~~~~~ 216 (219)
T 1q0u_A 151 AHILVVDEADLMLDMG--FI---TDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKY--MENPTFVHVLEHHH 216 (219)
T ss_dssp CCEEEECSHHHHHHTT--CH---HHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHH--CSSCEEEECC----
T ss_pred ceEEEEcCchHHhhhC--hH---HHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHH--cCCCeEEEeecccc
Confidence 8999999999999887 43 45566666665 6889999999999887755554 45777766555443
No 65
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=3.9e-27 Score=203.16 Aligned_cols=151 Identities=21% Similarity=0.331 Sum_probs=134.5
Q ss_pred CCceEEEEEEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCC
Q 012746 229 RPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308 (457)
Q Consensus 229 ~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~ 308 (457)
.+++...+...+....|+..|.++++..+.+++||||+++..++.++..|.+.|+.+..+||++++.+|..+++.|++|+
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~ 84 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK 84 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 34566666666655669999999999888889999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeccccccCCCCCccEEEEecCC------CCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhccc
Q 012746 309 KQVVVATVAFGMGIDRKDVRLVCHFNIP------KSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (457)
Q Consensus 309 ~~vLvaT~~~~~Gldip~v~~Vi~~~~p------~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 379 (457)
.+|||||+++++|+|+|++++||+||+| .+..+|+||+||+||.|+.|.+++++.+.+...++.+.+....
T Consensus 85 ~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 161 (175)
T 2rb4_A 85 EKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNS 161 (175)
T ss_dssp CSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTC
T ss_pred CeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcC
Confidence 9999999999999999999999999999 8999999999999999999999999999998888888776543
No 66
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=2.7e-27 Score=210.13 Aligned_cols=188 Identities=23% Similarity=0.240 Sum_probs=141.7
Q ss_pred ccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC------CCeEEEEcchH
Q 012746 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (457)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~------~~~~lvl~P~~ 88 (457)
..|+++++++++.+.|.+ +||.+|+|+|.++++.+++++++++.+|||+|||++|++|++.. +.+++|++|++
T Consensus 3 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~ 81 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFE-MGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTR 81 (206)
T ss_dssp SSGGGSCCCHHHHHHHHT-TTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCH
T ss_pred CChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcH
Confidence 469999999999999997 79999999999999999999999999999999999999988753 45899999999
Q ss_pred HHHHHHHHHHHHc-----CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh--hhhcCCccE
Q 012746 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNL 161 (457)
Q Consensus 89 ~L~~q~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~--~~~~~~l~~ 161 (457)
+|+.|+.+.++.+ +.......++........ .. ....+++++||+ .+..... ......+++
T Consensus 82 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~---~~~~~i~v~T~~------~l~~~~~~~~~~~~~~~~ 149 (206)
T 1vec_A 82 ELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RL---DDTVHVVIATPG------RILDLIKKGVAKVDHVQM 149 (206)
T ss_dssp HHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HT---TSCCSEEEECHH------HHHHHHHTTCSCCTTCCE
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hc---CCCCCEEEeCHH------HHHHHHHcCCcCcccCCE
Confidence 9999999999875 344444555544332211 11 123566666555 4333322 234567899
Q ss_pred EEEeccccccccCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeE
Q 012746 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLV 222 (457)
Q Consensus 162 lViDEah~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~ 222 (457)
+|+||||++.+++ |. ..+..+...++ +.+++++|||+++...+.+...+ .+|..
T Consensus 150 lViDEah~~~~~~--~~---~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l--~~p~~ 204 (206)
T 1vec_A 150 IVLDEADKLLSQD--FV---QIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHL--EKPYE 204 (206)
T ss_dssp EEEETHHHHTSTT--TH---HHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHC--SSCEE
T ss_pred EEEEChHHhHhhC--cH---HHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHc--CCCeE
Confidence 9999999998765 54 44555566666 78999999999998877666554 34543
No 67
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.95 E-value=4.4e-27 Score=209.01 Aligned_cols=139 Identities=27% Similarity=0.404 Sum_probs=129.8
Q ss_pred hhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEecccccc
Q 012746 242 LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (457)
Q Consensus 242 ~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 321 (457)
...|+..|.++++...++++||||+++..++.+++.|...|+.+..+||++++.+|..+++.|++|+.+|||||+++++|
T Consensus 15 ~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~G 94 (212)
T 3eaq_A 15 VRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARG 94 (212)
T ss_dssp TTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCS
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcC
Confidence 35789999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhcccC
Q 012746 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380 (457)
Q Consensus 322 ldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 380 (457)
+|+|++++||+||+|+++..|+||+||+||.|+.|.+++++++.+...++.+.+.....
T Consensus 95 idi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~ 153 (212)
T 3eaq_A 95 LDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRR 153 (212)
T ss_dssp SSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSC
T ss_pred CCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999988888765543
No 68
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.95 E-value=6.5e-27 Score=212.27 Aligned_cols=193 Identities=21% Similarity=0.307 Sum_probs=143.2
Q ss_pred cccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc----------CCCeE
Q 012746 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----------KPGIV 81 (457)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~----------~~~~~ 81 (457)
.....|+++++++.+.+.|++ +|+..|+|+|.++++.+++|+++++.+|||+|||++|++|++. .+.++
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~ 100 (236)
T 2pl3_A 22 NEITRFSDFPLSKKTLKGLQE-AQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGV 100 (236)
T ss_dssp GGCSBGGGSCCCHHHHHHHHH-TTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCE
T ss_pred cccCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceE
Confidence 345579999999999999997 7999999999999999999999999999999999999998764 26789
Q ss_pred EEEcchHHHHHHHHHHHHHcC----CceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHH-h--hh
Q 012746 82 LVVSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-K--IH 154 (457)
Q Consensus 82 lvl~P~~~L~~q~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~-~--~~ 154 (457)
+|++|+++|+.|+.+.++.++ .....+.++........ .. . ..+++++||+ .+.... + ..
T Consensus 101 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~--~--~~~iiv~Tp~------~l~~~l~~~~~~ 167 (236)
T 2pl3_A 101 LIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAE---RI--N--NINILVCTPG------RLLQHMDETVSF 167 (236)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHH---HH--T--TCSEEEECHH------HHHHHHHHCSSC
T ss_pred EEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHH---hC--C--CCCEEEECHH------HHHHHHHhcCCc
Confidence 999999999999999999865 34444444433222111 11 1 2556555554 443332 2 23
Q ss_pred hcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEec
Q 012746 155 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS 225 (457)
Q Consensus 155 ~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~ 225 (457)
....+++||+||||++.+++ |. ..+..+...++ +.+++++|||+++.... .....+.+|..+..
T Consensus 168 ~~~~~~~lViDEah~~~~~~--~~---~~~~~i~~~~~~~~~~l~~SAT~~~~~~~--~~~~~~~~p~~i~~ 232 (236)
T 2pl3_A 168 HATDLQMLVLDEADRILDMG--FA---DTMNAVIENLPKKRQTLLFSATQTKSVKD--LARLSLKNPEYVWV 232 (236)
T ss_dssp CCTTCCEEEETTHHHHHHTT--TH---HHHHHHHHTSCTTSEEEEEESSCCHHHHH--HHHHSCSSCEEEEC
T ss_pred ccccccEEEEeChHHHhcCC--cH---HHHHHHHHhCCCCCeEEEEEeeCCHHHHH--HHHHhCCCCEEEEe
Confidence 45678999999999999887 44 44555666665 67899999999998766 33334567766543
No 69
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.95 E-value=3.3e-27 Score=214.18 Aligned_cols=194 Identities=19% Similarity=0.268 Sum_probs=139.8
Q ss_pred cccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC------CCeEEEEc
Q 012746 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVS 85 (457)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~------~~~~lvl~ 85 (457)
.....|+++++++.+.++|.+ +||..|+|+|.++++.+++|+++++.+|||+|||++|+++++.. +.+++|++
T Consensus 27 ~~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~ 105 (237)
T 3bor_A 27 EIVDNFDDMNLKESLLRGIYA-YGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLA 105 (237)
T ss_dssp CCCCSGGGSCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEEC
T ss_pred CccCChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEE
Confidence 345679999999999999987 79999999999999999999999999999999999999988753 56899999
Q ss_pred chHHHHHHHHHHHHHcCC----ceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh--hhhcCCc
Q 012746 86 PLIALMENQVIGLKEKGI----AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLL 159 (457)
Q Consensus 86 P~~~L~~q~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~--~~~~~~l 159 (457)
|+++|+.|+.+.++.++. ......++.... .....+..+. .++ +++||+.+..+.. ......+
T Consensus 106 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~l~~~~--~~I------lv~Tp~~l~~~l~~~~~~~~~~ 174 (237)
T 3bor_A 106 PTRELAQQIQKVILALGDYMGATCHACIGGTNVR---NEMQKLQAEA--PHI------VVGTPGRVFDMLNRRYLSPKWI 174 (237)
T ss_dssp SSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CC--CSE------EEECHHHHHHHHHTTSSCSTTC
T ss_pred CcHHHHHHHHHHHHHHhhhcCceEEEEECCCchH---HHHHHHhcCC--CCE------EEECHHHHHHHHHhCCcCcccC
Confidence 999999999999998642 333333322111 1111121111 344 4555555544432 2345668
Q ss_pred cEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEe
Q 012746 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (457)
Q Consensus 160 ~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~ 224 (457)
++||+||||++.+++ |.. .+..+...++ +.+++++|||+++...+.+..++ .+|..+.
T Consensus 175 ~~lViDEah~~~~~~--~~~---~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l--~~p~~i~ 233 (237)
T 3bor_A 175 KMFVLDEADEMLSRG--FKD---QIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFM--RDPIRIL 233 (237)
T ss_dssp CEEEEESHHHHHHTT--CHH---HHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHC--SSCEEEC
T ss_pred cEEEECCchHhhccC--cHH---HHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHC--CCCEEEE
Confidence 999999999998877 443 3445555554 78999999999999877665554 4666553
No 70
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.95 E-value=5.6e-27 Score=214.01 Aligned_cols=194 Identities=23% Similarity=0.304 Sum_probs=146.5
Q ss_pred ccccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC------CCeEEEE
Q 012746 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVV 84 (457)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~------~~~~lvl 84 (457)
......|+++++++.+.++|++ +||..|+++|.++++.+++|+++++.+|||+|||++|+++++.. +.+++|+
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil 117 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQ-LGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVL 117 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEE
T ss_pred ccccCCHHHcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEE
Confidence 3446679999999999999997 79999999999999999999999999999999999999988753 5679999
Q ss_pred cchHHHHHHHHHHHHHc----CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh---hhhcC
Q 012746 85 SPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSRG 157 (457)
Q Consensus 85 ~P~~~L~~q~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~---~~~~~ 157 (457)
+|+++|+.|+.+.++.+ +.....+.++......... +. . ..+++++|| +.+..+.. ...+.
T Consensus 118 ~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~-~--~~~I~v~Tp------~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 118 TPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLA---LA-K--KPHIIIATP------GRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHH---HH-T--CCSEEEECH------HHHHHHHHHSTTCCCT
T ss_pred eCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHH---hc-C--CCCEEEECH------HHHHHHHHcCCCcCcc
Confidence 99999999999998875 5666666665544332211 11 1 245555554 44444322 23456
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEe
Q 012746 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (457)
Q Consensus 158 ~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~ 224 (457)
.+++||+||||++.+++ |+.. +..+...++ +.+++++|||+++.+.+.....+ .+|..+.
T Consensus 186 ~~~~lViDEah~l~~~~--~~~~---l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l--~~p~~i~ 246 (249)
T 3ber_A 186 ALKYLVMDEADRILNMD--FETE---VDKILKVIPRDRKTFLFSATMTKKVQKLQRAAL--KNPVKCA 246 (249)
T ss_dssp TCCEEEECSHHHHHHTT--CHHH---HHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHC--SSCEEEE
T ss_pred ccCEEEEcChhhhhccC--hHHH---HHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHC--CCCEEEE
Confidence 78999999999999876 5544 444555565 78999999999998876444443 5666553
No 71
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.95 E-value=3.7e-27 Score=201.25 Aligned_cols=144 Identities=19% Similarity=0.333 Sum_probs=127.1
Q ss_pred EEEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEe
Q 012746 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (457)
Q Consensus 236 ~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT 315 (457)
+......+.|...|.++++..+++++||||+++..++.++..|...|+.+..+||++++.+|..+++.|++|+.+|||||
T Consensus 8 ~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 87 (165)
T 1fuk_A 8 YVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST 87 (165)
T ss_dssp EEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE
T ss_pred EEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc
Confidence 33333334488999999998888899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhccc
Q 012746 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (457)
Q Consensus 316 ~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 379 (457)
+++++|+|+|++++||+||+|+++.+|+||+||+||.|+.|.+++++++.+...+..+.+....
T Consensus 88 ~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 151 (165)
T 1fuk_A 88 DLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYST 151 (165)
T ss_dssp GGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSC
T ss_pred ChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999999999999998888887765543
No 72
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.95 E-value=7.2e-27 Score=214.98 Aligned_cols=187 Identities=26% Similarity=0.329 Sum_probs=137.4
Q ss_pred ccccccCCCCC--hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc----------CC
Q 012746 11 TSQTQKNKPLH--EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----------KP 78 (457)
Q Consensus 11 ~~~~~~~~~~~--l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~----------~~ 78 (457)
......|++++ +++.+.+.|++ +||.+|+|+|.++++.+++|+|+++++|||+|||++|++|++. .+
T Consensus 48 ~~~~~~f~~l~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~ 126 (262)
T 3ly5_A 48 AFEDTSFASLCNLVNENTLKAIKE-MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNG 126 (262)
T ss_dssp BSGGGCC-----CCCHHHHHHHHH-TTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred ccccCChhHhccccCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCC
Confidence 33455677777 99999999998 7999999999999999999999999999999999999999874 37
Q ss_pred CeEEEEcchHHHHHHHHHHHHHcC----CceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh--
Q 012746 79 GIVLVVSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-- 152 (457)
Q Consensus 79 ~~~lvl~P~~~L~~q~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~-- 152 (457)
.+++|++||++|+.|+.+.++.++ .......++........ .+..+ .++++ +||+++..+..
T Consensus 127 ~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~---~~Iiv------~Tp~~l~~~~~~~ 194 (262)
T 3ly5_A 127 TGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ---KLGNG---INIIV------ATPGRLLDHMQNT 194 (262)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHH---HHHHC---CSEEE------ECHHHHHHHHHHC
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHH---HhcCC---CCEEE------EcHHHHHHHHHcc
Confidence 789999999999999999999853 33444444444333222 12221 45554 45555544432
Q ss_pred -hhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHc
Q 012746 153 -IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESL 215 (457)
Q Consensus 153 -~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~ 215 (457)
.....++++||+||||++.++| |++. +..+...++ +.|+++||||+++.+.......+
T Consensus 195 ~~~~~~~l~~lViDEah~l~~~~--~~~~---l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l 254 (262)
T 3ly5_A 195 PGFMYKNLQCLVIDEADRILDVG--FEEE---LKQIIKLLPTRRQTMLFSATQTRKVEDLARISL 254 (262)
T ss_dssp TTCCCTTCCEEEECSHHHHHHTT--CHHH---HHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHC
T ss_pred CCcccccCCEEEEcChHHHhhhh--HHHH---HHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHc
Confidence 2345679999999999999987 5544 445555565 68899999999999877554443
No 73
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.95 E-value=6.6e-27 Score=211.25 Aligned_cols=192 Identities=19% Similarity=0.264 Sum_probs=142.1
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC------CCeEEEEcc
Q 012746 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSP 86 (457)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~------~~~~lvl~P 86 (457)
....|+++++++.+.+.|++ +||..|+++|.++++.+++|+++++.+|||+|||++|+++++.. +.+++|++|
T Consensus 22 ~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~P 100 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLRA-AGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAP 100 (230)
T ss_dssp --CCGGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred CCCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeC
Confidence 44679999999999999997 79999999999999999999999999999999999999888643 468999999
Q ss_pred hHHHHHHHHHHHHHc-----CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh--hhhcCCc
Q 012746 87 LIALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLL 159 (457)
Q Consensus 87 ~~~L~~q~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~--~~~~~~l 159 (457)
+++|+.|+.+.++.+ +.......++......... .. ..+++++| |+.+..+.. .....++
T Consensus 101 t~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~----~~~Iiv~T------p~~l~~~~~~~~~~~~~~ 167 (230)
T 2oxc_A 101 TREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTR---LK----KCHIAVGS------PGRIKQLIELDYLNPGSI 167 (230)
T ss_dssp SHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHH---TT----SCSEEEEC------HHHHHHHHHTTSSCGGGC
T ss_pred CHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHh---cc----CCCEEEEC------HHHHHHHHhcCCcccccC
Confidence 999999999999986 3445555555544332221 11 24565555 444444432 2234568
Q ss_pred cEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEe
Q 012746 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (457)
Q Consensus 160 ~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~ 224 (457)
+++|+||||++.++|. |+.. +..+...++ +.+++++|||+++...+.+..+ +.+|..+.
T Consensus 168 ~~lViDEah~~~~~~~-~~~~---~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~--~~~p~~i~ 227 (230)
T 2oxc_A 168 RLFILDEADKLLEEGS-FQEQ---INWIYSSLPASKQMLAVSATYPEFLANALTKY--MRDPTFVR 227 (230)
T ss_dssp CEEEESSHHHHHSTTS-SHHH---HHHHHHHSCSSCEEEEEESCCCHHHHHHHTTT--CSSCEEEC
T ss_pred CEEEeCCchHhhcCcc-hHHH---HHHHHHhCCCCCeEEEEEeccCHHHHHHHHHH--cCCCeEEE
Confidence 9999999999998763 5544 445566666 7889999999998876544332 45666553
No 74
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.95 E-value=1.5e-26 Score=205.54 Aligned_cols=189 Identities=19% Similarity=0.232 Sum_probs=139.5
Q ss_pred cCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc---------CCCeEEEEcc
Q 012746 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---------KPGIVLVVSP 86 (457)
Q Consensus 16 ~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~---------~~~~~lvl~P 86 (457)
.|+++++++.+.+.|++ +|+.+|+|+|.++++.+++|+++++.+|||+|||++|+++++. .+++++|++|
T Consensus 2 ~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P 80 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHG-RGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTP 80 (207)
T ss_dssp CGGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECS
T ss_pred ChhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEEC
Confidence 48889999999999998 7999999999999999999999999999999999999988764 2568999999
Q ss_pred hHHHHHHHHHHHHHcC--CceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh--hhhcCCccEE
Q 012746 87 LIALMENQVIGLKEKG--IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNLV 162 (457)
Q Consensus 87 ~~~L~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~--~~~~~~l~~l 162 (457)
+++|+.|+.+.++.+. .......++.......... .. ..+++++|| +.+..+.. ......++++
T Consensus 81 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~i~v~T~------~~l~~~~~~~~~~~~~~~~i 148 (207)
T 2gxq_A 81 TRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEAL---LR---GADAVVATP------GRALDYLRQGVLDLSRVEVA 148 (207)
T ss_dssp SHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHH---HH---CCSEEEECH------HHHHHHHHHTSSCCTTCSEE
T ss_pred CHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHh---hC---CCCEEEECH------HHHHHHHHcCCcchhhceEE
Confidence 9999999999999864 3344444444322221111 11 145555554 44433322 3345678999
Q ss_pred EEeccccccccCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEe
Q 012746 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (457)
Q Consensus 163 ViDEah~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~ 224 (457)
|+||||++.+++ |.. .+..+....+ +.+++++|||+++...+.....+ .+|..+.
T Consensus 149 ViDEah~~~~~~--~~~---~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~p~~i~ 204 (207)
T 2gxq_A 149 VLDEADEMLSMG--FEE---EVEALLSATPPSRQTLLFSATLPSWAKRLAERYM--KNPVLIN 204 (207)
T ss_dssp EEESHHHHHHTT--CHH---HHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHC--SSCEEEE
T ss_pred EEEChhHhhccc--hHH---HHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHc--CCCeEEE
Confidence 999999998876 443 4445555555 78899999999988766444433 4566543
No 75
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=3.5e-26 Score=205.16 Aligned_cols=191 Identities=16% Similarity=0.241 Sum_probs=142.4
Q ss_pred cccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC------CCeEEEEcch
Q 012746 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPL 87 (457)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~------~~~~lvl~P~ 87 (457)
...|+++++++.+.+.|.+ +||..|+|+|.++++.+++++++++.+|||+|||++|+++++.. ..+++|++|+
T Consensus 13 ~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt 91 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHT 91 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHH-TTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSC
T ss_pred CCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCC
Confidence 3569999999999999998 79999999999999999999999999999999999999988754 4589999999
Q ss_pred HHHHHHHHHHHHHc-----CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh--hhhcCCcc
Q 012746 88 IALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLN 160 (457)
Q Consensus 88 ~~L~~q~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~--~~~~~~l~ 160 (457)
++|+.|+.+.++.+ +.....+.++......... +.... .+++++|| +.+..+.. ......++
T Consensus 92 ~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~~--~~i~v~T~------~~l~~~~~~~~~~~~~~~ 160 (220)
T 1t6n_A 92 RELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNC--PHIVVGTP------GRILALARNKSLNLKHIK 160 (220)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HHHSC--CSEEEECH------HHHHHHHHTTSSCCTTCC
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---HhcCC--CCEEEeCH------HHHHHHHHhCCCCcccCC
Confidence 99999999999886 5566666666554433222 22222 35555554 44444322 23456789
Q ss_pred EEEEecccccccc-CCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEE
Q 012746 161 LVAIDEAHCISSW-GHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (457)
Q Consensus 161 ~lViDEah~~~~~-~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~ 223 (457)
++|+||||++.++ + |+ ..+..+....+ +.+++++|||+++...+.... .+.+|..+
T Consensus 161 ~lViDEah~~~~~~~--~~---~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~--~~~~p~~i 218 (220)
T 1t6n_A 161 HFILDECDKMLEQLD--MR---RDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRK--FMQDPMEI 218 (220)
T ss_dssp EEEEESHHHHHSSHH--HH---HHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHT--TCSSCEEE
T ss_pred EEEEcCHHHHhcccC--cH---HHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHH--HcCCCeEE
Confidence 9999999999763 3 33 44555566665 789999999999987663333 34566544
No 76
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.94 E-value=1.2e-26 Score=201.57 Aligned_cols=151 Identities=21% Similarity=0.373 Sum_probs=121.8
Q ss_pred CCCceEEEEEEeCchhhHHHHHHHHHHhc-CCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhc
Q 012746 228 NRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306 (457)
Q Consensus 228 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~ 306 (457)
..+++...+..... .+|...|.++++.. +++++||||+++..++.+++.|+..|+.+..+||++++.+|..+++.|++
T Consensus 16 ~~~~i~q~~~~v~~-~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 16 TSENITQKVVWVEE-SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp CCTTEEEEEEECCG-GGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCceEEEEEeCc-HHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 34566666655443 57888999999886 57789999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhccc
Q 012746 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (457)
Q Consensus 307 g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 379 (457)
|+.+|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|+.|.+++++++.+...++.+.+....
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 167 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVE 167 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHH
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999988887777765543
No 77
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=1.5e-26 Score=198.52 Aligned_cols=136 Identities=18% Similarity=0.356 Sum_probs=126.5
Q ss_pred hhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccC
Q 012746 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (457)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gl 322 (457)
.+|...|.++++..+++++||||+++..++.+++.|...|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+
T Consensus 16 ~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gl 95 (172)
T 1t5i_A 16 NEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGM 95 (172)
T ss_dssp GGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTC
T ss_pred HHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCc
Confidence 57889999999988888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccc-hHHHHHHHHHhcc
Q 012746 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFILSKNQ 378 (457)
Q Consensus 323 dip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~-~~~~~~~i~~~~~ 378 (457)
|+|++++||+||+|+++..|+||+||+||.|+.|.+++++++. +...++.+.+...
T Consensus 96 di~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~ 152 (172)
T 1t5i_A 96 DIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFE 152 (172)
T ss_dssp CGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHC
T ss_pred chhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999876 4566666665443
No 78
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.94 E-value=1.5e-26 Score=208.07 Aligned_cols=192 Identities=20% Similarity=0.241 Sum_probs=139.1
Q ss_pred cccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc------CCCeEEEEc
Q 012746 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVS 85 (457)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~------~~~~~lvl~ 85 (457)
.....|+++++++.+.+.|++ +||..|+|+|.++++.+++|+++++.+|||+|||++|+++++. .+++++|++
T Consensus 11 ~~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 89 (224)
T 1qde_A 11 KVVYKFDDMELDENLLRGVFG-YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLA 89 (224)
T ss_dssp CCCCCGGGGTCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred cccCChhhcCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEE
Confidence 345679999999999999997 6999999999999999999999999999999999999998874 356899999
Q ss_pred chHHHHHHHHHHHHHcC----CceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh--hhhcCCc
Q 012746 86 PLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLL 159 (457)
Q Consensus 86 P~~~L~~q~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~--~~~~~~l 159 (457)
|+++|+.|+.+.++.++ .......++....... ..+ ...+++++||+ .+..... .....++
T Consensus 90 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~----~~~~iiv~Tp~------~l~~~~~~~~~~~~~~ 156 (224)
T 1qde_A 90 PTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDA---EGL----RDAQIVVGTPG------RVFDNIQRRRFRTDKI 156 (224)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------C----TTCSEEEECHH------HHHHHHHTTSSCCTTC
T ss_pred CCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHH---hcC----CCCCEEEECHH------HHHHHHHhCCcchhhC
Confidence 99999999999998853 3334444333221111 111 11456555554 4333322 2345668
Q ss_pred cEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEe
Q 012746 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (457)
Q Consensus 160 ~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~ 224 (457)
++||+||||++.+++ |.. .+..+....+ +.+++++|||+++...+.+...+ .+|..+.
T Consensus 157 ~~iViDEah~~~~~~--~~~---~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~--~~p~~i~ 215 (224)
T 1qde_A 157 KMFILDEADEMLSSG--FKE---QIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFM--RNPVRIL 215 (224)
T ss_dssp CEEEEETHHHHHHTT--CHH---HHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHC--SSCEEEC
T ss_pred cEEEEcChhHHhhhh--hHH---HHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHC--CCCEEEE
Confidence 999999999998877 443 3445555554 78899999999998877555544 4555543
No 79
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.94 E-value=6.3e-27 Score=219.31 Aligned_cols=189 Identities=19% Similarity=0.246 Sum_probs=140.6
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEcCCCchhhHHHHHhhhcC------CCeEEEE
Q 012746 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------PGIVLVV 84 (457)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~l~~l~~------~~~~lvl 84 (457)
....|+++++++.+.+.|.. +||..|+++|.++++.++.| +|++++||||+|||++|++|++.+ ++++||+
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil 168 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL 168 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred CcCCHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEE
Confidence 45689999999999999998 79999999999999999987 899999999999999999998853 4579999
Q ss_pred cchHHHHHHHHHHHHHcCC-----ceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh---hhhc
Q 012746 85 SPLIALMENQVIGLKEKGI-----AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSR 156 (457)
Q Consensus 85 ~P~~~L~~q~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~---~~~~ 156 (457)
+||++|+.|+.+.++.++. ......++..... ......++ +++||+++..+.. ...+
T Consensus 169 ~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~~I------lV~TP~~l~~~l~~~~~~~l 233 (300)
T 3fmo_B 169 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER---------GQKISEQI------VIGTPGTVLDWCSKLKFIDP 233 (300)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCT---------TCCCCCSE------EEECHHHHHHHHTTTCCCCG
T ss_pred cCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhh---------hhcCCCCE------EEECHHHHHHHHHhcCCCCh
Confidence 9999999999999888542 2222222221100 00112344 5566666655542 3345
Q ss_pred CCccEEEEeccccccc-cCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEe
Q 012746 157 GLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (457)
Q Consensus 157 ~~l~~lViDEah~~~~-~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~ 224 (457)
.++++|||||||++.+ +| |.. .+..+...++ +.|++++|||+++.+....... +.+|..+.
T Consensus 234 ~~l~~lVlDEad~l~~~~~--~~~---~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~--l~~p~~i~ 296 (300)
T 3fmo_B 234 KKIKVFVLDEADVMIATQG--HQD---QSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKV--VPDPNVIK 296 (300)
T ss_dssp GGCSEEEETTHHHHHHSTT--HHH---HHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHH--SSSCEEEE
T ss_pred hhceEEEEeCHHHHhhccC--cHH---HHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHH--CCCCeEEE
Confidence 6799999999999987 45 443 3444555555 6899999999999987755444 45666654
No 80
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.94 E-value=1.7e-26 Score=210.76 Aligned_cols=192 Identities=21% Similarity=0.195 Sum_probs=133.7
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc-------CCCeEEEEcchHHHHHH
Q 012746 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-------KPGIVLVVSPLIALMEN 93 (457)
Q Consensus 21 ~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~-------~~~~~lvl~P~~~L~~q 93 (457)
++++.+.+.+.+ +||..|+|+|.++++.+++|+++++.+|||+|||++|++|++. .+.+++|++|+++|+.|
T Consensus 35 ~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q 113 (245)
T 3dkp_A 35 KINSRLLQNILD-AGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQ 113 (245)
T ss_dssp CCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHH
T ss_pred CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHH
Confidence 799999999998 6999999999999999999999999999999999999999874 35589999999999999
Q ss_pred HHHHHHHcCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhh----hhcCCccEEEEecccc
Q 012746 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI----HSRGLLNLVAIDEAHC 169 (457)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~----~~~~~l~~lViDEah~ 169 (457)
+.+.++.++................. ...........+++++ ||+.+..+... ..+.++++||+||||+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~I~v~------Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~ 186 (245)
T 3dkp_A 114 IHRELIKISEGTGFRIHMIHKAAVAA-KKFGPKSSKKFDILVT------TPNRLIYLLKQDPPGIDLASVEWLVVDESDK 186 (245)
T ss_dssp HHHHHHHHTTTSCCCEECCCHHHHHH-TTTSTTSCCCCCEEEE------CHHHHHHHHHSSSCSCCCTTCCEEEESSHHH
T ss_pred HHHHHHHHhcccCceEEEEecCccHH-HHhhhhhcCCCCEEEE------CHHHHHHHHHhCCCCcccccCcEEEEeChHH
Confidence 99999986332211111111111110 0000111223455554 55555444322 3456789999999999
Q ss_pred ccccC-CCCHHHHHHHHHHHHhC--CCccEEEEeccCChhHHHHHHHHcCCCCCeEEec
Q 012746 170 ISSWG-HDFRPSYRKLSSLRNYL--PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS 225 (457)
Q Consensus 170 ~~~~~-~~~~~~~~~l~~~~~~~--~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~ 225 (457)
+.+++ ..|+..+ ..+.... ++.++++||||+++++.+..... +.+|..+..
T Consensus 187 ~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~--l~~p~~i~~ 240 (245)
T 3dkp_A 187 LFEDGKTGFRDQL---ASIFLACTSHKVRRAMFSATFAYDVEQWCKLN--LDNVISVSI 240 (245)
T ss_dssp HHHHC--CHHHHH---HHHHHHCCCTTCEEEEEESSCCHHHHHHHHHH--SSSCEEEEE
T ss_pred hcccccccHHHHH---HHHHHhcCCCCcEEEEEeccCCHHHHHHHHHh--CCCCEEEEe
Confidence 98865 2355444 4444443 36899999999999887744444 356665543
No 81
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.94 E-value=3.7e-26 Score=199.22 Aligned_cols=146 Identities=18% Similarity=0.353 Sum_probs=125.2
Q ss_pred CCceEEEEEEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCC
Q 012746 229 RPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308 (457)
Q Consensus 229 ~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~ 308 (457)
.+++...+..... ..|+..|.++++..+ +++||||+++..++.+++.|+..|+.+..+||++++.+|..+++.|++|+
T Consensus 27 ~~~i~q~~~~~~~-~~K~~~L~~~l~~~~-~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~ 104 (191)
T 2p6n_A 27 SLDVIQEVEYVKE-EAKMVYLLECLQKTP-PPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGK 104 (191)
T ss_dssp -CCSEEEEEECCG-GGHHHHHHHHHTTSC-SCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTS
T ss_pred CcCceEEEEEcCh-HHHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC
Confidence 4456555555433 578889999888754 57999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccc-hHHHHHHHHHh
Q 012746 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFILSK 376 (457)
Q Consensus 309 ~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~-~~~~~~~i~~~ 376 (457)
.+|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|+.|.+++|+++. +...++.+.+.
T Consensus 105 ~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~l~~~ 173 (191)
T 2p6n_A 105 KDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKAL 173 (191)
T ss_dssp CSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999876 55555555443
No 82
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.94 E-value=2e-27 Score=218.05 Aligned_cols=193 Identities=20% Similarity=0.268 Sum_probs=141.2
Q ss_pred cccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC--------------
Q 012746 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-------------- 77 (457)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~-------------- 77 (457)
.....|+++++++.+.++|.+ +||.+|+|+|.++++.+++|+++++.+|||+|||++|++|++..
T Consensus 20 ~~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~ 98 (253)
T 1wrb_A 20 NVIENFDELKLDPTIRNNILL-ASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKT 98 (253)
T ss_dssp SCCCSSGGGSCCCSTTTTTTT-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CC
T ss_pred CccCCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhcccccccccc
Confidence 355679999999999999987 79999999999999999999999999999999999999988642
Q ss_pred -CCeEEEEcchHHHHHHHHHHHHHcC----CceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh
Q 012746 78 -PGIVLVVSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK 152 (457)
Q Consensus 78 -~~~~lvl~P~~~L~~q~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~ 152 (457)
++++||++|+++|+.|+.+.++.++ .......++....... ..+. ...+++++|| +.+..+..
T Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~---~~~~Ivv~Tp------~~l~~~l~ 166 (253)
T 1wrb_A 99 AYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQI---REVQ---MGCHLLVATP------GRLVDFIE 166 (253)
T ss_dssp BCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHH---HHHS---SCCSEEEECH------HHHHHHHH
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHH---HHhC---CCCCEEEECH------HHHHHHHH
Confidence 3589999999999999999988753 3344444443322221 1111 1245655555 44444422
Q ss_pred --hhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHh--CC---CccEEEEeccCChhHHHHHHHHcCCCCCeEEe
Q 012746 153 --IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY--LP---DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (457)
Q Consensus 153 --~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~--~~---~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~ 224 (457)
...+..+++||+||||++.+++ |...+.. +... .+ +.+++++|||+++.........+ .++..+.
T Consensus 167 ~~~~~~~~~~~lViDEah~~~~~~--~~~~~~~---i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l--~~~~~i~ 238 (253)
T 1wrb_A 167 KNKISLEFCKYIVLDEADRMLDMG--FEPQIRK---IIEESNMPSGINRQTLMFSATFPKEIQKLAADFL--YNYIFMT 238 (253)
T ss_dssp TTSBCCTTCCEEEEETHHHHHHTT--CHHHHHH---HHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHC--SSCEEEE
T ss_pred cCCCChhhCCEEEEeCHHHHHhCc--hHHHHHH---HHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHc--CCCEEEE
Confidence 2345668999999999999887 5654444 4442 33 57899999999998876555544 4566554
No 83
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.94 E-value=1.1e-25 Score=209.13 Aligned_cols=138 Identities=25% Similarity=0.396 Sum_probs=126.1
Q ss_pred hhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccC
Q 012746 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (457)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gl 322 (457)
..|+..|.++++...++++||||+++..++.+++.|...|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+
T Consensus 13 ~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gi 92 (300)
T 3i32_A 13 RGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGL 92 (300)
T ss_dssp SSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCST
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCc
Confidence 57889999999888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhcccC
Q 012746 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380 (457)
Q Consensus 323 dip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 380 (457)
|+|++++||+||+|++...|+||+||+||.|+.|.+++++++.+...++.+.+.....
T Consensus 93 di~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~ 150 (300)
T 3i32_A 93 DIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRR 150 (300)
T ss_dssp TCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCC
T ss_pred cccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCc
Confidence 9999999999999999999999999999999999999999999999888888765543
No 84
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=7.4e-23 Score=208.07 Aligned_cols=316 Identities=21% Similarity=0.190 Sum_probs=218.5
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc---CCCeEEEEcchHHHHHHHHHHHHH---
Q 012746 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE--- 100 (457)
Q Consensus 27 ~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~---~~~~~lvl~P~~~L~~q~~~~~~~--- 100 (457)
..+.+..+|+ .|+++|..+++.++.|+ +..++||+|||++|.+|++. .+..++|++||++||.|..+.+..
T Consensus 69 REAs~R~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~ 145 (997)
T 2ipc_A 69 RESAKRYLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYR 145 (997)
T ss_dssp HHHHHHHTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHH
Confidence 3444456899 79999999999999998 99999999999999999853 367899999999999998888766
Q ss_pred -cCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhH-HH-HHhh-------hhcC---CccEEEEecc
Q 012746 101 -KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM-SK-LKKI-------HSRG---LLNLVAIDEA 167 (457)
Q Consensus 101 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~-~~-l~~~-------~~~~---~l~~lViDEa 167 (457)
+|+.+..+.++.........+. ++|+ ++||+.+ .+ +.+. ..++ .+.++|+||+
T Consensus 146 ~lGLsv~~i~Gg~~~~~r~~ay~--------~DIv------yGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEa 211 (997)
T 2ipc_A 146 GLGLSVGVIQHASTPAERRKAYL--------ADVT------YVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEV 211 (997)
T ss_dssp TTTCCEEECCTTCCHHHHHHHHT--------SSEE------EEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTH
T ss_pred hcCCeEEEEeCCCCHHHHHHHcC--------CCEE------EECchhhhhHHHHHhhhcchhhcccccCCCcceEEEech
Confidence 5788888777766443333221 4554 4555554 22 2222 2355 7899999999
Q ss_pred cccc-ccCCC----------CHHHHHHHHHHHHhC---------------------------------------------
Q 012746 168 HCIS-SWGHD----------FRPSYRKLSSLRNYL--------------------------------------------- 191 (457)
Q Consensus 168 h~~~-~~~~~----------~~~~~~~l~~~~~~~--------------------------------------------- 191 (457)
|.++ +.+.. -...|..+..+...+
T Consensus 212 DsmLiDeartPLIISgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~ 291 (997)
T 2ipc_A 212 DSILIDEARTPLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEG 291 (997)
T ss_dssp HHHTTSSTTSCEEEEESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHH
T ss_pred HHHHHhCCCCCeeeeCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCcc
Confidence 9986 21100 001111111111100
Q ss_pred -----------------------------------------------CC-------------------------------
Q 012746 192 -----------------------------------------------PD------------------------------- 193 (457)
Q Consensus 192 -----------------------------------------------~~------------------------------- 193 (457)
++
T Consensus 292 Ly~~~n~~l~~~i~~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~ 371 (997)
T 2ipc_A 292 LFSPENMELAHMLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITY 371 (997)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECH
T ss_pred ccCchhHHHHHHHHHHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeH
Confidence 00
Q ss_pred -------ccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCCceEEEE--EEeCchhhHHHHHHHHHHh--cCCccEE
Q 012746 194 -------VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKA--NGDTCAI 262 (457)
Q Consensus 194 -------~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~l~~~l~~--~~~~~~i 262 (457)
.++.+||+|...+. .++.+..++. ++..+.++|.+.... ........|+..+.+.+.. ..+.++|
T Consensus 372 QnyFr~Y~kLsGMTGTA~tE~-~Ef~~iY~l~---Vv~IPTn~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVL 447 (997)
T 2ipc_A 372 QNFFRLYEKRAGMTGTAKTEE-KEFQEIYGMD---VVVVPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVL 447 (997)
T ss_dssp HHHHTTSSEEEEEESSCGGGH-HHHHHHHCCC---EEECCCSSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHhChHheecCCCchHHH-HHHHHHhCCC---EEEcCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEE
Confidence 02678888887654 4566666654 445566666654322 2234446777777666654 2577899
Q ss_pred EEeCCcccHHHHHHHHH---------------------------------------------------------------
Q 012746 263 VYCLERTTCDELSAYLS--------------------------------------------------------------- 279 (457)
Q Consensus 263 If~~s~~~~~~l~~~L~--------------------------------------------------------------- 279 (457)
|+|.|.+.++.++..|+
T Consensus 448 VgT~SIe~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 527 (997)
T 2ipc_A 448 VGTISIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAW 527 (997)
T ss_dssp EECSSHHHHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccc
Confidence 99999999999999999
Q ss_pred -------------hCCCceEeecCCCCHHHHHHHHHHHhcC-CceEEEEeccccccCCCCCc------------------
Q 012746 280 -------------AGGISCAAYHAGLNDKARSSVLDDWISS-RKQVVVATVAFGMGIDRKDV------------------ 327 (457)
Q Consensus 280 -------------~~g~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vLvaT~~~~~Gldip~v------------------ 327 (457)
+.|++..++++....++-..+- +.| ...|-|||++++||.||.=-
T Consensus 528 ~~~~~~~~~~~~~~~gI~H~VLNAK~he~EAeIIA---qAG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~ 604 (997)
T 2ipc_A 528 EGLKRAVHTLAVLRQGIPHQVLNAKHHAREAEIVA---QAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDR 604 (997)
T ss_dssp HHHHHHHHHHHHHHHCCCCCEECSSSHHHHHHHHH---TTTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSST
T ss_pred cccchhhhhhHHHHcCCCeeeccccchHHHHHHHH---hcCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhcccc
Confidence 4566666777765443332222 233 34599999999999998522
Q ss_pred -c-------------------------------------------------------EEEEecCCCCHHHHHHHhcccCC
Q 012746 328 -R-------------------------------------------------------LVCHFNIPKSMEAFYQESGRAGR 351 (457)
Q Consensus 328 -~-------------------------------------------------------~Vi~~~~p~s~~~~~Qr~GRagR 351 (457)
. +||-...+.|..--.|-.||+||
T Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGR 684 (997)
T 2ipc_A 605 YEWKVELFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGR 684 (997)
T ss_dssp THHHHHHHHHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSC
T ss_pred cccccccccccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhccccc
Confidence 1 89999999999999999999999
Q ss_pred CCCCceEEEEeccch
Q 012746 352 DQLPSKSLLYYGMDD 366 (457)
Q Consensus 352 ~g~~g~~~~~~~~~~ 366 (457)
.|.+|.+..|++-+|
T Consensus 685 QGDPGsSrF~LSLeD 699 (997)
T 2ipc_A 685 QGDPGGSRFYVSFDD 699 (997)
T ss_dssp SSCCCEEEEEEESSS
T ss_pred CCCCCCeEEEEECCh
Confidence 999999988877654
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.88 E-value=1.6e-27 Score=204.47 Aligned_cols=135 Identities=24% Similarity=0.319 Sum_probs=125.7
Q ss_pred hhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccC
Q 012746 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (457)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gl 322 (457)
..|...|.++++...++++||||+++..++.+++.|+..|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+
T Consensus 15 ~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gi 94 (170)
T 2yjt_D 15 EHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGI 94 (170)
Confidence 46778888888877778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhc
Q 012746 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (457)
Q Consensus 323 dip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~ 377 (457)
|+|++++||+||+|+++.+|+||+||+||.|+.|.+++++...+...++.+.+..
T Consensus 95 d~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~ 149 (170)
T 2yjt_D 95 DIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYI 149 (170)
Confidence 9999999999999999999999999999999999999999988877776665543
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.90 E-value=6.1e-23 Score=207.64 Aligned_cols=75 Identities=17% Similarity=0.225 Sum_probs=61.6
Q ss_pred cCCCCCCHHHHHHHHH----HHcCCCEEEEcCCCchhhHHHHHhhhcCCCeEEEEcchHHHHHHHHHHHHHcCCceeEec
Q 012746 34 FGHAQFRDKQLDAIQA----VLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLS 109 (457)
Q Consensus 34 ~g~~~~~~~Q~~~i~~----~~~~~~~lv~a~TGsGKT~~~~l~~l~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~ 109 (457)
.|| ++||+|.+++.. +.+|+++++.||||+|||++|++|++...++++|++||++|+.|+.+.+..++.....+.
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~~~~~~~~~~t~~l~~q~~~~~~~l~~~~~~l~ 82 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQLKKKVLIFTRTHSQLDSIYKNAKLLGLKTGFLI 82 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHGGGTCCEEEC-
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHhcCCcEEEec
Confidence 477 699999998754 457899999999999999999999999999999999999999999999988776655544
No 87
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.86 E-value=9.8e-20 Score=184.87 Aligned_cols=316 Identities=15% Similarity=0.114 Sum_probs=192.3
Q ss_pred CCCCCCHHHHHHHHHH----HcCCCEEEEcCCCchhhHHHHHhhhcCCCeEEEEcchHHHHHHHHHHHHHc----CCcee
Q 012746 35 GHAQFRDKQLDAIQAV----LSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK----GIAGE 106 (457)
Q Consensus 35 g~~~~~~~Q~~~i~~~----~~~~~~lv~a~TGsGKT~~~~l~~l~~~~~~lvl~P~~~L~~q~~~~~~~~----~~~~~ 106 (457)
|| ++||+|.+++..+ .+|+++++.||||+|||++|++|++..+++++|++||++|+.|+.+.+..+ +++..
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~ 79 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEVKPKVLFVVRTHNEFYPIYRDLTKIREKRNITFS 79 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHHCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEE
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEE
Confidence 44 5999999987654 478999999999999999999999999999999999999999999988876 44444
Q ss_pred EecCCCc----------------------------------HHHHHH-----------HHHHhhcCCCcccEEEECCCcc
Q 012746 107 FLSSTQT----------------------------------MQVKTK-----------IYEDLDSGKPSLRLLYVTPELT 141 (457)
Q Consensus 107 ~~~~~~~----------------------------------~~~~~~-----------~~~~~~~~~~~~~i~~~t~~~i 141 (457)
.+.+... ...... .+..........+++++|+..+
T Consensus 80 ~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l 159 (551)
T 3crv_A 80 FLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYF 159 (551)
T ss_dssp ECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHH
T ss_pred EEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchHh
Confidence 4332110 000000 0000011112467887777766
Q ss_pred cCchhHHHHHhhhhcCCccEEEEeccccccccCCC---------------------------------------------
Q 012746 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD--------------------------------------------- 176 (457)
Q Consensus 142 ~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~--------------------------------------------- 176 (457)
..+..... ........++||||||++.+ ..+
T Consensus 160 ~~~~~~~~---~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~~~ 235 (551)
T 3crv_A 160 FIDRYREF---IDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEKYI 235 (551)
T ss_dssp HCHHHHTT---SCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSSCE
T ss_pred cCHHHHHh---cCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 55431111 11112467899999999876 200
Q ss_pred --------CHHHHH-------------------------HHHHHHH----------------------------hCCC--
Q 012746 177 --------FRPSYR-------------------------KLSSLRN----------------------------YLPD-- 193 (457)
Q Consensus 177 --------~~~~~~-------------------------~l~~~~~----------------------------~~~~-- 193 (457)
+..... .+..+.. .+.+
T Consensus 236 ~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~~~ 315 (551)
T 3crv_A 236 KVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLNDNE 315 (551)
T ss_dssp ECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGCTT
T ss_pred ccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhccC
Confidence 000000 0100100 0112
Q ss_pred ccEEEEeccCChhHHHHHHHHcCCCCCeE-------EecCCCCCceEEEEEEe-C-----chhhHHHHH----HHHHHhc
Q 012746 194 VPILALTATAAPKVQKDVMESLCLQNPLV-------LKSSFNRPNLFYEVRYK-D-----LLDDAYADL----CSVLKAN 256 (457)
Q Consensus 194 ~~~v~lSAT~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~~~~~~~-~-----~~~~~~~~l----~~~l~~~ 256 (457)
..+|++|||+.+ ...+...+++..+.. +..++ ..+....+... + ........+ .++++.
T Consensus 316 ~svIltSaTL~~--~~~~~~~lGl~~~~~~~~~~~~~~spf-~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~- 391 (551)
T 3crv_A 316 LSIILMSGTLPP--REYMEKVWGIKRNMLYLDVEREIQKRV-SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQ- 391 (551)
T ss_dssp CEEEEEESSCCC--HHHHHHTSCCCSCEEEEEHHHHTTSCC-SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHH-
T ss_pred ceEEEEeeCCCc--HHHHHHHhCCCCccccccceeecCCcC-CCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHh-
Confidence 578999999987 456778888874432 12233 33333322211 0 001223333 333333
Q ss_pred CCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEe--ccccccCCCC-----CccE
Q 012746 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT--VAFGMGIDRK-----DVRL 329 (457)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT--~~~~~Gldip-----~v~~ 329 (457)
.++.++||++|....+.+++ ..+..+..-..+++. ...++.|+.+...||++| ..+++|||+| .++.
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~---~~~~~v~~q~~~~~~---~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~ 465 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMS---RISLPKYVESEDSSV---EDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISD 465 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHT---TCCSSEEECCSSCCH---HHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEE
T ss_pred CCCCEEEEecCHHHHHHHHH---hcCCcEEEcCCCCCH---HHHHHHHHhcCCeEEEEEecceecccccccccCCcceeE
Confidence 45679999999999888886 234444433334553 456777854445799998 6999999999 4789
Q ss_pred EEEecCCCC---------------------H---------HHHHHHhcccCCCCCCceEEEEeccc
Q 012746 330 VCHFNIPKS---------------------M---------EAFYQESGRAGRDQLPSKSLLYYGMD 365 (457)
Q Consensus 330 Vi~~~~p~s---------------------~---------~~~~Qr~GRagR~g~~g~~~~~~~~~ 365 (457)
||..++|.. . ..+.|.+||+-|..+.--++++++..
T Consensus 466 viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 531 (551)
T 3crv_A 466 VVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKR 531 (551)
T ss_dssp EEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGG
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehh
Confidence 998887641 1 12368999999986544444555443
No 88
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.82 E-value=4e-20 Score=169.74 Aligned_cols=123 Identities=11% Similarity=0.107 Sum_probs=97.1
Q ss_pred hhHHHHHHHHHHhc--CCccEEEEeCCcccHHHHHHHHHhC-CCceEeecCCCCHHHHHHHHHHHhcC-Cce-EEEEecc
Q 012746 243 DDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISS-RKQ-VVVATVA 317 (457)
Q Consensus 243 ~~~~~~l~~~l~~~--~~~~~iIf~~s~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-vLvaT~~ 317 (457)
..|+..|.++++.. .+.++|||+++...+..++..|... |+.+..+||+++..+|..+++.|++| +.+ +|++|++
T Consensus 95 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~ 174 (271)
T 1z5z_A 95 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA 174 (271)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCT
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhh
Confidence 46888888887764 6789999999999999999999885 99999999999999999999999998 777 7899999
Q ss_pred ccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceE--EEEeccc
Q 012746 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKS--LLYYGMD 365 (457)
Q Consensus 318 ~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~--~~~~~~~ 365 (457)
+++|+|++.+++||+||+|+++..|.||+||++|.|+.+.+ +.++..+
T Consensus 175 ~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 175 GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp TCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 99999999999999999999999999999999999987755 4455554
No 89
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.80 E-value=1.1e-19 Score=162.17 Aligned_cols=156 Identities=22% Similarity=0.250 Sum_probs=95.3
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC---------CCeEEEEcchHHHHHH-HHHHHHHc--
Q 012746 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---------PGIVLVVSPLIALMEN-QVIGLKEK-- 101 (457)
Q Consensus 34 ~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~---------~~~~lvl~P~~~L~~q-~~~~~~~~-- 101 (457)
.+..+|+|+|.++++.+++++++++.+|||+|||++++++++.. .++++|++|+++|+.| +.+.+..+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 34557999999999999999999999999999999999887642 6789999999999999 66666664
Q ss_pred -CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhh--------hhcCCccEEEEeccccccc
Q 012746 102 -GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--------HSRGLLNLVAIDEAHCISS 172 (457)
Q Consensus 102 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~--------~~~~~l~~lViDEah~~~~ 172 (457)
+.....+.+........ ..... ..+++++||+ .+...... .....+++||+||||++.+
T Consensus 109 ~~~~v~~~~g~~~~~~~~---~~~~~---~~~i~v~T~~------~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~ 176 (216)
T 3b6e_A 109 KWYRVIGLSGDTQLKISF---PEVVK---SCDIIISTAQ------ILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK 176 (216)
T ss_dssp TTSCEEECCC---CCCCH---HHHHH---HCSEEEEEHH------HHHHHHHC-------CCCGGGCSEEEETTC-----
T ss_pred cCceEEEEeCCcccchhH---Hhhcc---CCCEEEECHH------HHHHHHhccCcccccccchhcccEEEEECchhhcc
Confidence 33444433322110000 00000 1456555554 43333221 3345689999999999976
Q ss_pred cCCCCHHHHHHHHHHH--Hh---------CCCccEEEEecc
Q 012746 173 WGHDFRPSYRKLSSLR--NY---------LPDVPILALTAT 202 (457)
Q Consensus 173 ~~~~~~~~~~~l~~~~--~~---------~~~~~~v~lSAT 202 (457)
.+. +...+..+.... .. .++.++++||||
T Consensus 177 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 177 EAV-YNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp --C-HHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred CCc-HHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 442 332222211111 11 157899999998
No 90
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.78 E-value=7.6e-19 Score=158.51 Aligned_cols=139 Identities=22% Similarity=0.139 Sum_probs=104.8
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcCCCeEEEEcchHHHHHHHHHHHHHcCCc-eeEecCCCcHHH
Q 012746 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIA-GEFLSSTQTMQV 116 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~~~~~lvl~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~ 116 (457)
+++++|.+++..+++++++++++|||+|||.+++.++...+.+++|++|+++|+.|+.+++..++.. ...+.+....
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~~-- 170 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-- 170 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCBC--
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCCC--
Confidence 6899999999999999899999999999999998888877899999999999999999999988776 5555544321
Q ss_pred HHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccE
Q 012746 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196 (457)
Q Consensus 117 ~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 196 (457)
..+++++|++. +....... ...+++|||||||.+.+.. + ..+...++..++
T Consensus 171 -------------~~~i~v~T~~~------l~~~~~~~-~~~~~llIiDEaH~l~~~~------~---~~i~~~~~~~~~ 221 (237)
T 2fz4_A 171 -------------LKPLTVSTYDS------AYVNAEKL-GNRFMLLIFDEVHHLPAES------Y---VQIAQMSIAPFR 221 (237)
T ss_dssp -------------CCSEEEEEHHH------HHHTHHHH-TTTCSEEEEECSSCCCTTT------H---HHHHHTCCCSEE
T ss_pred -------------cCCEEEEeHHH------HHhhHHHh-cccCCEEEEECCccCCChH------H---HHHHHhccCCEE
Confidence 24555555443 32222211 2348999999999997643 2 234556677889
Q ss_pred EEEeccCChhH
Q 012746 197 LALTATAAPKV 207 (457)
Q Consensus 197 v~lSAT~~~~~ 207 (457)
+++|||+....
T Consensus 222 l~LSATp~r~D 232 (237)
T 2fz4_A 222 LGLTATFERED 232 (237)
T ss_dssp EEEEESCC---
T ss_pred EEEecCCCCCC
Confidence 99999998764
No 91
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.78 E-value=6.1e-19 Score=163.97 Aligned_cols=145 Identities=17% Similarity=0.105 Sum_probs=104.6
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc----CCCeEEEEcchHHHHHHHHHHHHHcCCc----eeEec
Q 012746 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGIA----GEFLS 109 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~----~~~~~lvl~P~~~L~~q~~~~~~~~~~~----~~~~~ 109 (457)
+|+|+|.++++.++++++.++++|||+|||++++.++.. ..++++|++|+++|+.|+.+++++++.. ...+.
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~ 192 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIG 192 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECS
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEe
Confidence 699999999999998888999999999999998776653 2459999999999999999999987542 22222
Q ss_pred CCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHH
Q 012746 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (457)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~ 189 (457)
++..... ......+++++|++.+..... .....+++||+||||++.. ..+..+..
T Consensus 193 ~~~~~~~---------~~~~~~~I~v~T~~~l~~~~~-------~~~~~~~~vIiDEaH~~~~---------~~~~~il~ 247 (282)
T 1rif_A 193 GGASKDD---------KYKNDAPVVVGTWQTVVKQPK-------EWFSQFGMMMNDECHLATG---------KSISSIIS 247 (282)
T ss_dssp TTCSSTT---------CCCTTCSEEEECHHHHTTSCG-------GGGGGEEEEEEETGGGCCH---------HHHHHHTT
T ss_pred CCCcchh---------hhccCCcEEEEchHHHHhhHH-------HHHhhCCEEEEECCccCCc---------ccHHHHHH
Confidence 2221100 111346787777765543211 1234589999999999864 34455555
Q ss_pred hC-CCccEEEEeccCChhH
Q 012746 190 YL-PDVPILALTATAAPKV 207 (457)
Q Consensus 190 ~~-~~~~~v~lSAT~~~~~ 207 (457)
.+ +..+++++|||++...
T Consensus 248 ~~~~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 248 GLNNCMFKFGLSGSLRDGK 266 (282)
T ss_dssp TCTTCCEEEEECSSCCTTS
T ss_pred HhhcCCeEEEEeCCCCCcc
Confidence 55 4789999999998654
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.78 E-value=1e-17 Score=171.39 Aligned_cols=161 Identities=15% Similarity=0.131 Sum_probs=99.0
Q ss_pred EEEEeccCChhHHHHHHHHcCCCCCeEEe--cCCCCCceEEEEEEe------CchhhHHH----HHHHHHHhcCCccEEE
Q 012746 196 ILALTATAAPKVQKDVMESLCLQNPLVLK--SSFNRPNLFYEVRYK------DLLDDAYA----DLCSVLKANGDTCAIV 263 (457)
Q Consensus 196 ~v~lSAT~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~------~~~~~~~~----~l~~~l~~~~~~~~iI 263 (457)
+|++|||+.+ ...+...+++. ...+. .+++..+....+... ......+. .+.++++.. ++.++|
T Consensus 378 ~il~SaTL~p--~~~~~~~lGl~-~~~~~~~spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~-~g~~lv 453 (620)
T 4a15_A 378 TIHMSGTLDP--FDFYSDITGFE-IPFKKIGEIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKV-KKNTIV 453 (620)
T ss_dssp EEEEESSCCS--HHHHHHHHCCC-CCEEECCCCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHHH-CSCEEE
T ss_pred EEEEccCCCc--HHHHHHHhCCC-ceeeecCCCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhC-CCCEEE
Confidence 5899999997 46667888886 44333 234444443322211 11112222 344444444 456999
Q ss_pred EeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEec--cccccCCCCC--ccEEEEecCCCC-
Q 012746 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV--AFGMGIDRKD--VRLVCHFNIPKS- 338 (457)
Q Consensus 264 f~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~--~~~~Gldip~--v~~Vi~~~~p~s- 338 (457)
|++|....+.+++.|+. .... ...+++..+|..++++|+ ++..||+++. .+++|||+|+ .+.||..++|..
T Consensus 454 lF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~ 529 (620)
T 4a15_A 454 YFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPR 529 (620)
T ss_dssp EESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCC
T ss_pred EeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCC
Confidence 99999999999888762 2222 445566678999999999 8889999985 9999999986 678999888752
Q ss_pred ------------------H----------HHHHHHhcccCCCCCCceEEEEecc
Q 012746 339 ------------------M----------EAFYQESGRAGRDQLPSKSLLYYGM 364 (457)
Q Consensus 339 ------------------~----------~~~~Qr~GRagR~g~~g~~~~~~~~ 364 (457)
. ....|.+||+-|....--++++++.
T Consensus 530 ~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 530 PDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp CCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred CCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 1 1237999999998554444445543
No 93
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.72 E-value=5.6e-17 Score=146.40 Aligned_cols=158 Identities=15% Similarity=0.102 Sum_probs=106.1
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC--------CCeEEEEcchHHHHHHHHHHHHHc-CCceeEe
Q 012746 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKEK-GIAGEFL 108 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~--------~~~~lvl~P~~~L~~q~~~~~~~~-~~~~~~~ 108 (457)
.++++|.++++.+.+|+++++.||||+|||..+.++++.. ...++++.|+++++.|..+.+... +......
T Consensus 61 p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~ 140 (235)
T 3llm_A 61 PVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKS 140 (235)
T ss_dssp GGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSS
T ss_pred ChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCce
Confidence 4789999999999999999999999999998777665532 338999999999999999888763 2211000
Q ss_pred cCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccc-cccCCCCHHHHHHHHHH
Q 012746 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCI-SSWGHDFRPSYRKLSSL 187 (457)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~-~~~~~~~~~~~~~l~~~ 187 (457)
.+... ...........++ +++||+.+..+... .+.++++||+||||.+ .+.+ | ....+..+
T Consensus 141 ~g~~~-------~~~~~~~~~~~~I------vv~Tpg~l~~~l~~-~l~~~~~lVlDEah~~~~~~~--~--~~~~l~~i 202 (235)
T 3llm_A 141 CGYSV-------RFESILPRPHASI------MFCTVGVLLRKLEA-GIRGISHVIVDEIHERDINTD--F--LLVVLRDV 202 (235)
T ss_dssp EEEEE-------TTEEECCCSSSEE------EEEEHHHHHHHHHH-CCTTCCEEEECCTTSCCHHHH--H--HHHHHHHH
T ss_pred EEEee-------chhhccCCCCCeE------EEECHHHHHHHHHh-hhcCCcEEEEECCccCCcchH--H--HHHHHHHH
Confidence 00000 0000000112334 45566666555432 4677999999999985 3322 1 12356667
Q ss_pred HHhCCCccEEEEeccCChhHHHHHHHHcC
Q 012746 188 RNYLPDVPILALTATAAPKVQKDVMESLC 216 (457)
Q Consensus 188 ~~~~~~~~~v~lSAT~~~~~~~~~~~~~~ 216 (457)
....++.+++++|||++.+. +.++++
T Consensus 203 ~~~~~~~~~il~SAT~~~~~---~~~~~~ 228 (235)
T 3llm_A 203 VQAYPEVRIVLMSATIDTSM---FCEYFF 228 (235)
T ss_dssp HHHCTTSEEEEEECSSCCHH---HHHHTT
T ss_pred HhhCCCCeEEEEecCCCHHH---HHHHcC
Confidence 77778999999999999886 445543
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.70 E-value=8e-08 Score=98.17 Aligned_cols=78 Identities=18% Similarity=0.091 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhh--HHHHHhhhc-----CCCeEEEEcchHHHHHHHH
Q 012746 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKS--MCYQIPALA-----KPGIVLVVSPLIALMENQV 95 (457)
Q Consensus 23 ~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT--~~~~l~~l~-----~~~~~lvl~P~~~L~~q~~ 95 (457)
...+...|.+.|+-..-.+.|.++++.++.++.+++.|++||||| +.++++.+. .+.++++++||..++.+..
T Consensus 134 ~~~~~~~l~~~~~~~~~~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~ 213 (608)
T 1w36_D 134 EALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 (608)
T ss_dssp HHHHHHHHHTTCCCTTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHH
Confidence 345666777654423337899999999999999999999999999 566676664 2458999999999998877
Q ss_pred HHHHH
Q 012746 96 IGLKE 100 (457)
Q Consensus 96 ~~~~~ 100 (457)
+.+..
T Consensus 214 e~~~~ 218 (608)
T 1w36_D 214 ESLGK 218 (608)
T ss_dssp HHHTH
T ss_pred HHHHH
Confidence 66543
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.24 E-value=3.5e-06 Score=86.98 Aligned_cols=70 Identities=21% Similarity=0.144 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHHHcCCC-EEEEcCCCchhhHHHH---HhhhcCCCeEEEEcchHHHHHHHHHHHHHcCCceeE
Q 012746 38 QFRDKQLDAIQAVLSGRD-CFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEF 107 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~~~~-~lv~a~TGsGKT~~~~---l~~l~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~ 107 (457)
.+++.|.+|+..++..++ .+++||+|||||.+.. ..++..+.++|+++||..-+.+..+++...+.....
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~~ilR 262 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILR 262 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCCceEE
Confidence 588999999999887664 6889999999996533 223456889999999999999999999876655433
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.15 E-value=2.1e-05 Score=80.61 Aligned_cols=69 Identities=22% Similarity=0.308 Sum_probs=55.9
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHH--Hhhh-c-CCCeEEEEcchHHHHHHHHHHHHHcCCc
Q 012746 36 HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPAL-A-KPGIVLVVSPLIALMENQVIGLKEKGIA 104 (457)
Q Consensus 36 ~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~--l~~l-~-~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 104 (457)
+..+++.|.+++..++.+.-.++.||+|||||.+.. +..+ . .+.++++++||...+.+..+++...+..
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~~~ 250 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLK 250 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTTCC
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcCCe
Confidence 346899999999999887778999999999996533 2222 2 4779999999999999999998876654
No 97
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.00 E-value=4.4e-05 Score=80.12 Aligned_cols=69 Identities=23% Similarity=0.334 Sum_probs=55.9
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHH--Hhhh-c-CCCeEEEEcchHHHHHHHHHHHHHcCCc
Q 012746 36 HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPAL-A-KPGIVLVVSPLIALMENQVIGLKEKGIA 104 (457)
Q Consensus 36 ~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~--l~~l-~-~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 104 (457)
+..+++.|.+|+..++.+.-.++.||+|||||.+.. +..+ . .+.++++++||...+.+..+++.+.+..
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~g~~ 430 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLK 430 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhhCcc
Confidence 346889999999999887778999999999996533 2222 2 4789999999999999999999887654
No 98
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.97 E-value=5.1e-05 Score=79.59 Aligned_cols=69 Identities=23% Similarity=0.316 Sum_probs=55.8
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHH--Hhhhc--CCCeEEEEcchHHHHHHHHHHHHHcCCce
Q 012746 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPALA--KPGIVLVVSPLIALMENQVIGLKEKGIAG 105 (457)
Q Consensus 37 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~--l~~l~--~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 105 (457)
..+++.|.+++..++.+.-.++.||+|||||.+.. +..+. .+.++++++||..-+.+..+++...+...
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~g~~v 427 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKV 427 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTTTCCE
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHhCcce
Confidence 45789999999999887778999999999996533 22222 46799999999999999999988766543
No 99
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.91 E-value=2.6e-05 Score=76.98 Aligned_cols=65 Identities=17% Similarity=0.157 Sum_probs=48.0
Q ss_pred cCCCCCCHHHHHHHHHHHc----CC-CEEEEcCCCchhhHHHH--Hhhhc-CCC-eEEEEcchHHHHHHHHHHH
Q 012746 34 FGHAQFRDKQLDAIQAVLS----GR-DCFCLMPTGGGKSMCYQ--IPALA-KPG-IVLVVSPLIALMENQVIGL 98 (457)
Q Consensus 34 ~g~~~~~~~Q~~~i~~~~~----~~-~~lv~a~TGsGKT~~~~--l~~l~-~~~-~~lvl~P~~~L~~q~~~~~ 98 (457)
..|..+++.|.+++..++. ++ .+++.|+.|||||.+.. +..+. .+. .+++++||...+....+.+
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhh
Confidence 5788999999999987753 23 89999999999996432 22232 343 7999999988776655443
No 100
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.88 E-value=2.9e-05 Score=78.49 Aligned_cols=60 Identities=13% Similarity=-0.017 Sum_probs=47.6
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHH--Hhhh-cCCCeEEEEcchHHHHHHHHHH
Q 012746 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPAL-AKPGIVLVVSPLIALMENQVIG 97 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~--l~~l-~~~~~~lvl~P~~~L~~q~~~~ 97 (457)
.+++.|.+++..++.++.+++.||+|+|||.+.. +..+ ..+.++++++||...+....+.
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhh
Confidence 4889999999999988899999999999996432 2222 3477899999999887765543
No 101
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.80 E-value=0.00024 Score=65.30 Aligned_cols=126 Identities=11% Similarity=0.049 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHh--cCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEecccccc
Q 012746 244 DAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (457)
Q Consensus 244 ~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 321 (457)
.|+..|.+++.. ..+.+++||++......-+..+|...|++...+.|.....++. -.++...+-+.|.+.+-|
T Consensus 109 GKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag~~g 183 (328)
T 3hgt_A 109 GKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEGINF 183 (328)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCCCT
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECCCCCC
Confidence 566666655543 3567999999999999999999999999999999985543211 124556666667777777
Q ss_pred CC-----CCCccEEEEecCCCCHHHH-HHHhcccCCCC--C--CceEEEEeccchHHHHHHHH
Q 012746 322 ID-----RKDVRLVCHFNIPKSMEAF-YQESGRAGRDQ--L--PSKSLLYYGMDDRRRMEFIL 374 (457)
Q Consensus 322 ld-----ip~v~~Vi~~~~p~s~~~~-~Qr~GRagR~g--~--~g~~~~~~~~~~~~~~~~i~ 374 (457)
+| +...+.||.||..+++..= +|.+-|+.|.| + .-.++-+++....+......
T Consensus 184 in~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~ 246 (328)
T 3hgt_A 184 TKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFF 246 (328)
T ss_dssp TTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHH
T ss_pred cCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHc
Confidence 86 6789999999999999874 99999998873 2 34566677777666555444
No 102
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.67 E-value=0.0033 Score=64.73 Aligned_cols=63 Identities=17% Similarity=0.202 Sum_probs=49.2
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHH--h-hhcC----CCeEEEEcchHHHHHHHHHHHHHc
Q 012746 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQI--P-ALAK----PGIVLVVSPLIALMENQVIGLKEK 101 (457)
Q Consensus 37 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l--~-~l~~----~~~~lvl~P~~~L~~q~~~~~~~~ 101 (457)
..+++-|.+++.. .+..++|.|+.|||||.+..- . .+.. ..+++++++|+..+.+..+++...
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 4689999999972 356799999999999976442 1 2222 358999999999999999988763
No 103
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.09 E-value=0.0011 Score=63.82 Aligned_cols=43 Identities=14% Similarity=-0.065 Sum_probs=32.9
Q ss_pred EEEEcCCCchhhHHHHHhhhcCCCeEEEEcchHHHHHHHHHHHHH
Q 012746 56 CFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKE 100 (457)
Q Consensus 56 ~lv~a~TGsGKT~~~~l~~l~~~~~~lvl~P~~~L~~q~~~~~~~ 100 (457)
.++.|+.|+|||....- .+. ....+|++||++++.++.+.+..
T Consensus 164 ~~I~G~aGsGKTt~I~~-~~~-~~~~lVlTpT~~aa~~l~~kl~~ 206 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILS-RVN-FEEDLILVPGRQAAEMIRRRANA 206 (446)
T ss_dssp EEEEECTTSCHHHHHHH-HCC-TTTCEEEESCHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHH-Hhc-cCCeEEEeCCHHHHHHHHHHhhh
Confidence 57899999999975432 222 25679999999999988877754
No 104
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.86 E-value=0.0098 Score=56.50 Aligned_cols=63 Identities=22% Similarity=0.187 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhh----h-cCCCeEEEEcchHHHHHHHHHHHHH
Q 012746 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA----L-AKPGIVLVVSPLIALMENQVIGLKE 100 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~----l-~~~~~~lvl~P~~~L~~q~~~~~~~ 100 (457)
.++|+|...+..+...+-+++..+-+.|||.+....+ + ..+..+++++|+..-+....+.++.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~ 230 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 5899999999877555668889999999997644322 2 2356899999999988877766654
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.79 E-value=0.012 Score=49.56 Aligned_cols=30 Identities=20% Similarity=0.171 Sum_probs=21.8
Q ss_pred HHHHHHHHHHH---------cCCCEEEEcCCCchhhHHH
Q 012746 41 DKQLDAIQAVL---------SGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 41 ~~Q~~~i~~~~---------~~~~~lv~a~TGsGKT~~~ 70 (457)
+.|.+++..+. .|+.+++.+|+|+|||..+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 17 VSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp HHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 45666555443 3678999999999999654
No 106
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.025 Score=52.27 Aligned_cols=18 Identities=6% Similarity=-0.084 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCchhhHHH
Q 012746 53 GRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~ 70 (457)
+.++++.||+|+|||.+.
T Consensus 45 ~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLV 62 (318)
T ss_dssp CCEEEEECCCSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 468999999999999765
No 107
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.38 E-value=0.029 Score=53.39 Aligned_cols=17 Identities=29% Similarity=0.274 Sum_probs=14.7
Q ss_pred CCEEEEcCCCchhhHHH
Q 012746 54 RDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~ 70 (457)
+.+++.+|+|+|||..+
T Consensus 46 ~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 46999999999999754
No 108
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.25 E-value=0.015 Score=54.20 Aligned_cols=55 Identities=16% Similarity=0.091 Sum_probs=33.3
Q ss_pred cccccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHH-----cCCCEEEEcCCCchhhHHHH
Q 012746 10 STSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVL-----SGRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 10 ~~~~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~-----~~~~~lv~a~TGsGKT~~~~ 71 (457)
.......|+++.-.+...+.|.+...+ |. ..+.+. ..+.+++.+|+|+|||..+.
T Consensus 10 ~~~~~~~~~di~G~~~~~~~l~~~i~~----~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 10 SEKPNVKWEDVAGLEGAKEALKEAVIL----PV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHTHH----HH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred ecCCCCCHHHhcChHHHHHHHHHHHHH----HH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 344556677777777777777764210 00 001111 13579999999999997654
No 109
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.22 E-value=0.066 Score=46.17 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.5
Q ss_pred CCEEEEcCCCchhhHHH
Q 012746 54 RDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~ 70 (457)
..+++.||+|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 36999999999999654
No 110
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.19 E-value=0.0028 Score=55.41 Aligned_cols=37 Identities=24% Similarity=0.052 Sum_probs=25.6
Q ss_pred cCCCEEEEcCCCchhhHHHHHhh---hcCCCeEEEEcchH
Q 012746 52 SGRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLI 88 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~l~~---l~~~~~~lvl~P~~ 88 (457)
.|.-+++.+++|+|||...+-.+ ..++.+++++.|..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 34457788999999997654322 23467888887764
No 111
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.13 E-value=0.024 Score=57.49 Aligned_cols=63 Identities=21% Similarity=0.171 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHh----hhcC-CCeEEEEcchHHHHHHHHHHHHH
Q 012746 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIP----ALAK-PGIVLVVSPLIALMENQVIGLKE 100 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~----~l~~-~~~~lvl~P~~~L~~q~~~~~~~ 100 (457)
.++|+|...+..+...+.+++..+-|+|||.+.... ++.. +..+++++|+...+.+..+.++.
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~ 230 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 489999999988755677889999999999654322 1222 45899999999999888777665
No 112
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.09 E-value=0.016 Score=54.25 Aligned_cols=33 Identities=12% Similarity=0.121 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHH----cCC---CEEEEcCCCchhhHHHH
Q 012746 39 FRDKQLDAIQAVL----SGR---DCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 39 ~~~~Q~~~i~~~~----~~~---~~lv~a~TGsGKT~~~~ 71 (457)
+.|||.+++..+. +|+ .+++.||.|+|||..+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 4688988876654 343 48999999999997653
No 113
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.01 E-value=0.011 Score=56.82 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=21.8
Q ss_pred CCCEEEEcCCCchhhHHHHHhhhcCCCeEEEEc
Q 012746 53 GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~l~~l~~~~~~lvl~ 85 (457)
.+++++.+|+|+|||..+...+-..+..++.+.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~ 180 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNIS 180 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEC
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEEee
Confidence 368999999999999766433333344444443
No 114
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.94 E-value=0.037 Score=51.18 Aligned_cols=16 Identities=19% Similarity=0.071 Sum_probs=14.1
Q ss_pred CEEEEcCCCchhhHHH
Q 012746 55 DCFCLMPTGGGKSMCY 70 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~ 70 (457)
++++.||+|+|||..+
T Consensus 44 ~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSV 59 (323)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 5999999999999754
No 115
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.87 E-value=0.017 Score=52.24 Aligned_cols=18 Identities=17% Similarity=0.115 Sum_probs=15.4
Q ss_pred CCEEEEcCCCchhhHHHH
Q 012746 54 RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~ 71 (457)
..+++.+|+|+|||..+.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 479999999999997654
No 116
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.85 E-value=0.034 Score=44.78 Aligned_cols=21 Identities=10% Similarity=-0.037 Sum_probs=17.2
Q ss_pred HcCCCEEEEcCCCchhhHHHH
Q 012746 51 LSGRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 51 ~~~~~~lv~a~TGsGKT~~~~ 71 (457)
..+.++++.+|+|+|||..+.
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHG
T ss_pred CCCCcEEEECCCCccHHHHHH
Confidence 345789999999999997653
No 117
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.77 E-value=0.011 Score=53.92 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=31.8
Q ss_pred cccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHH--HcCCCEEEEcCCCchhhHHHH
Q 012746 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAV--LSGRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~--~~~~~~lv~a~TGsGKT~~~~ 71 (457)
...|+++.-.++..+.+.+..... -...+.+..+ ...+.+++.||+|+|||..+-
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELP---LKHPELFEKVGIEPPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHH---HHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHH---hhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 445667776666666666532100 0011122222 234679999999999997654
No 118
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.69 E-value=0.012 Score=57.31 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=15.7
Q ss_pred CCEEEEcCCCchhhHHHHH
Q 012746 54 RDCFCLMPTGGGKSMCYQI 72 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~l 72 (457)
.++++.+|+|+|||..+-.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ 69 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEV 69 (447)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHH
Confidence 3699999999999976643
No 119
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.68 E-value=0.027 Score=47.78 Aligned_cols=132 Identities=17% Similarity=0.141 Sum_probs=66.3
Q ss_pred CCEEEEcCCCchhhHHHHH---hhhcCCCeEEEEcchHH-HHHHHHHHHHHcCCceeEecCCCc--HHHHHHHHHHhhcC
Q 012746 54 RDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIA-LMENQVIGLKEKGIAGEFLSSTQT--MQVKTKIYEDLDSG 127 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~l---~~l~~~~~~lvl~P~~~-L~~q~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 127 (457)
..+++..++|.|||.+++- -+..++.+|+|+.-.+. .-..-.+.+..+++.......+.. .......
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~------- 101 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREAD------- 101 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHH-------
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHH-------
Confidence 4789999999999987763 34456888888843321 000001112223222221111100 0000000
Q ss_pred CCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCChhH
Q 012746 128 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (457)
Q Consensus 128 ~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~ 207 (457)
.......+....+......+++||+||+-....+|. .+. ..+..++...|...-+.+|+-.++..
T Consensus 102 ------------~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~--l~~-~ev~~~l~~Rp~~~~vIlTGr~ap~~ 166 (196)
T 1g5t_A 102 ------------TAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDY--LPL-EEVISALNARPGHQTVIITGRGCHRD 166 (196)
T ss_dssp ------------HHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTS--SCH-HHHHHHHHTSCTTCEEEEECSSCCHH
T ss_pred ------------HHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCC--CCH-HHHHHHHHhCcCCCEEEEECCCCcHH
Confidence 000112333444454456799999999976555552 211 44555666666555666666655543
No 120
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.60 E-value=0.062 Score=49.34 Aligned_cols=55 Identities=13% Similarity=0.119 Sum_probs=30.4
Q ss_pred cccCCCCChHHHHHHHHHHhcCCCCCCHHHH-HHHHH--HHcCCCEEEEcCCCchhhHHHHH
Q 012746 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQL-DAIQA--VLSGRDCFCLMPTGGGKSMCYQI 72 (457)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~-~~i~~--~~~~~~~lv~a~TGsGKT~~~~l 72 (457)
...|+++.-.++..+.|.+.... |... +.+.. +..++.+++.||+|+|||..+-.
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~----~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~a 68 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQY----PVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKA 68 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHH----HHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHH----HhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHH
Confidence 34566666556666666553110 1000 01111 12356799999999999976543
No 121
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.50 E-value=0.047 Score=55.40 Aligned_cols=55 Identities=16% Similarity=0.128 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHHHc--CCCEEEEcCCCchhhHHHHHhhhcCCCeEEEEcchHHHHH
Q 012746 38 QFRDKQLDAIQAVLS--GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALME 92 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~--~~~~lv~a~TGsGKT~~~~l~~l~~~~~~lvl~P~~~L~~ 92 (457)
.++.-|.+++..+.+ ....++.|+-|.|||.+.-+.+-.-...++|.+|+.+=+.
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~~~~~vtAP~~~a~~ 231 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIAGRAIVTAPAKASTD 231 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSSSCEEEECSSCCSCH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHHhCcEEECCCHHHHH
Confidence 578899999998886 3347889999999996655444333456799999976543
No 122
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.50 E-value=0.035 Score=46.52 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCchhhHHH
Q 012746 53 GRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~ 70 (457)
..++++.+|+|+|||..+
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 357999999999999654
No 123
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.50 E-value=0.05 Score=53.08 Aligned_cols=118 Identities=12% Similarity=0.014 Sum_probs=54.6
Q ss_pred CCCEEEEcCCCchhhHHHH-Hh--hhc-CCCeEEEEcchHHHHHHHHHHHHH--cCCceeEec-CCCcHHHHHHHHHHhh
Q 012746 53 GRDCFCLMPTGGGKSMCYQ-IP--ALA-KPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLS-STQTMQVKTKIYEDLD 125 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~-l~--~l~-~~~~~lvl~P~~~L~~q~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~ 125 (457)
|.-+++.|++|+|||...+ +. +.. .+..+++++.-.. ..|...++.. .++....+. +...............
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~-~~~l~~R~~~~~~~i~~~~l~~g~l~~~~~~~~~~a~~ 278 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP-AAQLTLRMMCSEARIDMNRVRLGQLTDRDFSRLVDVAS 278 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC-HHHHHHHHHHHHTTCCTTTCCGGGCCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC-HHHHHHHHHHHHcCCCHHHHhCCCCCHHHHHHHHHHHH
Confidence 3457889999999995443 21 122 3557888764322 2233334322 333322121 1222222222211111
Q ss_pred cCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccc
Q 012746 126 SGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (457)
Q Consensus 126 ~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~ 172 (457)
... ...+++..+.-+........+.+......+++||||..+.+..
T Consensus 279 ~l~-~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 279 RLS-EAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp HHH-TSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEECGGGCBC
T ss_pred HHh-cCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcChhhcCC
Confidence 000 0234433222122222333334443344689999999999864
No 124
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.49 E-value=0.078 Score=49.19 Aligned_cols=19 Identities=26% Similarity=0.247 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 012746 53 GRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~ 71 (457)
+..+++.||+|+|||..+.
T Consensus 37 ~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 3579999999999996543
No 125
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.49 E-value=0.03 Score=52.11 Aligned_cols=54 Identities=17% Similarity=-0.022 Sum_probs=29.9
Q ss_pred cccCCCCChHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHH
Q 012746 14 TQKNKPLHEKEALVKLLRWHFG--HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~~g--~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~ 71 (457)
...|++++-.++..+.|++... ...+..++ ......+.+++.+|+|+|||..+-
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~----~~~~~~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFT----GKRTPWRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSC----TTCCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHh----CCCCCCceEEEECCCCccHHHHHH
Confidence 4567777766666666665310 00000000 000122679999999999997653
No 126
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.46 E-value=0.037 Score=50.62 Aligned_cols=19 Identities=21% Similarity=0.481 Sum_probs=16.2
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 012746 53 GRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~ 71 (457)
++.+++.||+|+|||..+-
T Consensus 54 ~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 4689999999999997653
No 127
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.42 E-value=0.064 Score=52.46 Aligned_cols=116 Identities=15% Similarity=0.092 Sum_probs=53.9
Q ss_pred cCCCEEEEcCCCchhhHHHHHhh---h-cCCCeEEEEcchHHHHHHHHHHHH--HcCCceeEec-CCCcHHHHHHHH---
Q 012746 52 SGRDCFCLMPTGGGKSMCYQIPA---L-AKPGIVLVVSPLIALMENQVIGLK--EKGIAGEFLS-STQTMQVKTKIY--- 121 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~l~~---l-~~~~~~lvl~P~~~L~~q~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~--- 121 (457)
.|.-+++.|++|+|||...+-.+ . ..+..+++++.-..- .+...++. ..++....+. +...........
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~-~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~a~ 280 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSA-QQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAM 280 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCH-HHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH-HHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 34568889999999996544221 1 235578887643221 33344432 2233222111 112222221111
Q ss_pred HHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccc
Q 012746 122 EDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (457)
Q Consensus 122 ~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~ 172 (457)
..+.. ..+++..+.-+........+........+++||||+.+.+..
T Consensus 281 ~~l~~----~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 281 GSLSN----AGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp HHHHS----SCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCC
T ss_pred HHHhc----CCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhcc
Confidence 11111 234433322121122223333333334689999999999864
No 128
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.41 E-value=0.019 Score=49.43 Aligned_cols=36 Identities=17% Similarity=-0.083 Sum_probs=24.8
Q ss_pred CCEEEEcCCCchhhHHHHHhh---hcCCCeEEEEcchHH
Q 012746 54 RDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIA 89 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~l~~---l~~~~~~lvl~P~~~ 89 (457)
+=.++.++.|+|||...+-.+ ..++.+++++.|...
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d 67 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID 67 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC--
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC
Confidence 335578999999997655332 345888999998764
No 129
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.41 E-value=0.31 Score=40.60 Aligned_cols=17 Identities=18% Similarity=0.170 Sum_probs=14.9
Q ss_pred CCEEEEcCCCchhhHHH
Q 012746 54 RDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~ 70 (457)
..+++.||+|+|||..+
T Consensus 44 ~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CceEEECCCCCCHHHHH
Confidence 57999999999999754
No 130
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.39 E-value=0.1 Score=49.53 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCchhhHHH
Q 012746 53 GRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~ 70 (457)
+..+++.||+|+|||...
T Consensus 44 ~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCEEECBCTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 467999999999999754
No 131
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.38 E-value=0.015 Score=60.10 Aligned_cols=62 Identities=13% Similarity=0.148 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHh---hhc----CCCeEEEEcchHHHHHHHHHHHHHc
Q 012746 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIP---ALA----KPGIVLVVSPLIALMENQVIGLKEK 101 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~---~l~----~~~~~lvl~P~~~L~~q~~~~~~~~ 101 (457)
.+++-|.+++.. .+..++|.|+.|||||.+..-- .+. ....+++++.|+..+.+..+++...
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~ 70 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQT 70 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 478999999975 3568999999999999764421 121 2468999999999999999988763
No 132
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.38 E-value=0.042 Score=51.20 Aligned_cols=143 Identities=20% Similarity=0.170 Sum_probs=67.2
Q ss_pred cCCCEEEEcCCCchhhHHHHHh---hhcCCCeEEEEcchHHHHHHHHHHHHH--cCCceeEe-cCCCcHHHHHHHH---H
Q 012746 52 SGRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFL-SSTQTMQVKTKIY---E 122 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~l~---~l~~~~~~lvl~P~~~L~~q~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~---~ 122 (457)
.|.-+++.|++|+|||..++-. +...+..+++++.-.. ..|...++.. .++....+ .+.........+. .
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms-~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a~~ 123 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMS-AEQLALRALSDLTSINMHDLESGRLDDDQWENLAKCFD 123 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSC-HHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC-HHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHHHHH
Confidence 3455788899999999654321 2225778888864322 2333333322 12221111 1122222222211 1
Q ss_pred HhhcCCCcccEEEE-CCCcccCch-hHHHHHhhhhcC-CccEEEEeccccccccC------CCCHHHHHHHHHHHHhCCC
Q 012746 123 DLDSGKPSLRLLYV-TPELTATPG-FMSKLKKIHSRG-LLNLVAIDEAHCISSWG------HDFRPSYRKLSSLRNYLPD 193 (457)
Q Consensus 123 ~~~~~~~~~~i~~~-t~~~i~t~~-~~~~l~~~~~~~-~l~~lViDEah~~~~~~------~~~~~~~~~l~~~~~~~~~ 193 (457)
.+.. ..+++. +|. + +.. ....+.+..... .+++||||-.+.+...+ .........|+.+.+.+ +
T Consensus 124 ~l~~----~~l~I~d~~~-~-si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAkel-~ 196 (338)
T 4a1f_A 124 HLSQ----KKLFFYDKSY-V-RIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLAREL-E 196 (338)
T ss_dssp HHHH----SCEEEECCTT-C-CHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHHH-T
T ss_pred HHhc----CCeEEeCCCC-C-cHHHHHHHHHHHHHhcCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHHc-C
Confidence 1111 234332 222 1 222 223333333333 69999999999885311 11222233344444332 6
Q ss_pred ccEEEEecc
Q 012746 194 VPILALTAT 202 (457)
Q Consensus 194 ~~~v~lSAT 202 (457)
++++++|-.
T Consensus 197 vpVi~lsQl 205 (338)
T 4a1f_A 197 IPIIALVQL 205 (338)
T ss_dssp SCEEEEEEC
T ss_pred CeEEEEEec
Confidence 788888765
No 133
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.37 E-value=0.057 Score=52.65 Aligned_cols=18 Identities=33% Similarity=0.473 Sum_probs=15.6
Q ss_pred CCEEEEcCCCchhhHHHH
Q 012746 54 RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~ 71 (457)
+.+++.||+|+|||..+-
T Consensus 168 ~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 579999999999997664
No 134
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.36 E-value=0.041 Score=51.93 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.6
Q ss_pred CCEEEEcCCCchhhHHHH
Q 012746 54 RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~ 71 (457)
+.+++.+|+|+|||..+-
T Consensus 85 ~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCEEEECSTTSCHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 579999999999997664
No 135
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.30 E-value=0.02 Score=59.73 Aligned_cols=63 Identities=16% Similarity=0.221 Sum_probs=48.6
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHH--Hh-hhc----CCCeEEEEcchHHHHHHHHHHHHHc
Q 012746 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IP-ALA----KPGIVLVVSPLIALMENQVIGLKEK 101 (457)
Q Consensus 37 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~--l~-~l~----~~~~~lvl~P~~~L~~q~~~~~~~~ 101 (457)
..+++-|.+++.. .+..++|.|+.|||||.+.. +. ++. ....+++++.|+..+.++.+++...
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 4689999999975 35689999999999996543 22 222 2357999999999999988887763
No 136
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.30 E-value=0.2 Score=46.84 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=14.7
Q ss_pred CCEEEEcCCCchhhHHH
Q 012746 54 RDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~ 70 (457)
.++++.||+|+|||..+
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46999999999999754
No 137
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.29 E-value=0.025 Score=53.77 Aligned_cols=55 Identities=9% Similarity=0.112 Sum_probs=33.9
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCCCCCHHH-HHHHHHH--HcCCCEEEEcCCCchhhHHHH
Q 012746 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQ-LDAIQAV--LSGRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q-~~~i~~~--~~~~~~lv~a~TGsGKT~~~~ 71 (457)
....|++.+=-++..+.|++..- .|.. -+.+..+ ...+.+|+.||+|+|||+.+-
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~----~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAk 200 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIE----LPVKHPELFESLGIAQPKGVILYGPPGTGKTLLAR 200 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTH----HHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH----HHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHH
Confidence 35678888877777777776411 1111 1111111 123689999999999998763
No 138
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.26 E-value=0.027 Score=50.45 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=15.8
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 012746 53 GRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~ 71 (457)
.+.+++.+|+|+|||..+.
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3579999999999997653
No 139
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.21 E-value=0.2 Score=46.26 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=14.3
Q ss_pred CEEEEcCCCchhhHHH
Q 012746 55 DCFCLMPTGGGKSMCY 70 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~ 70 (457)
++++.||+|+|||..+
T Consensus 48 ~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAA 63 (327)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 6999999999999765
No 140
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.20 E-value=0.2 Score=42.62 Aligned_cols=17 Identities=18% Similarity=0.210 Sum_probs=15.0
Q ss_pred CCEEEEcCCCchhhHHH
Q 012746 54 RDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~ 70 (457)
+.+++.+|+|+|||..+
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 67999999999999654
No 141
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.19 E-value=0.19 Score=45.99 Aligned_cols=17 Identities=18% Similarity=0.043 Sum_probs=14.9
Q ss_pred CCEEEEcCCCchhhHHH
Q 012746 54 RDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~ 70 (457)
.++++.||+|+|||..+
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46999999999999765
No 142
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.19 E-value=0.077 Score=49.19 Aligned_cols=40 Identities=25% Similarity=0.249 Sum_probs=22.8
Q ss_pred CccEEEEecccccc-ccCCCCHHHHHHHHHHHHhCC-CccEEEEeccCC
Q 012746 158 LLNLVAIDEAHCIS-SWGHDFRPSYRKLSSLRNYLP-DVPILALTATAA 204 (457)
Q Consensus 158 ~l~~lViDEah~~~-~~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~ 204 (457)
..++++|||+|.+. .. ....+..+....+ +.++|+ +++.+
T Consensus 105 ~~~vliiDEi~~l~~~~------~~~~L~~~le~~~~~~~iI~-~~n~~ 146 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAE------SQRHLRSFMEAYSSNCSIII-TANNI 146 (324)
T ss_dssp CEEEEEEESCCCGGGHH------HHHHHHHHHHHHGGGCEEEE-EESSG
T ss_pred CCeEEEEECCcccCcHH------HHHHHHHHHHhCCCCcEEEE-EeCCc
Confidence 46799999999985 31 2244444444433 344444 44433
No 143
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.15 E-value=0.049 Score=50.11 Aligned_cols=41 Identities=7% Similarity=0.111 Sum_probs=24.7
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccC
Q 012746 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (457)
Q Consensus 157 ~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~ 203 (457)
+..+++||||+|.+... ..+.+.......|..-++++.++-
T Consensus 81 ~~~kvviIdead~lt~~------a~naLLk~LEep~~~t~fIl~t~~ 121 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQ------AANAFLKALEEPPEYAVIVLNTRR 121 (305)
T ss_dssp SSSEEEEETTGGGBCHH------HHHHTHHHHHSCCTTEEEEEEESC
T ss_pred CCceEEEeccHHHhCHH------HHHHHHHHHhCCCCCeEEEEEECC
Confidence 44789999999998542 234555555655543344444443
No 144
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.14 E-value=0.057 Score=43.83 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=16.3
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~ 70 (457)
.++.+++.+|+|+|||...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6788999999999999643
No 145
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.02 E-value=0.029 Score=62.03 Aligned_cols=61 Identities=23% Similarity=0.271 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHH---hhhcC------CCeEEEEcchHHHHHHHHHHHHH
Q 012746 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQI---PALAK------PGIVLVVSPLIALMENQVIGLKE 100 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l---~~l~~------~~~~lvl~P~~~L~~q~~~~~~~ 100 (457)
++++-|.+++..- +++++|.|+.|||||.+.+- -.+.. ..+++++++|++.+.++.+++..
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 4899999999753 77999999999999977542 22222 34799999999999988877665
No 146
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.01 E-value=0.061 Score=53.54 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=26.5
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCC
Q 012746 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (457)
Q Consensus 159 l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~ 204 (457)
-.+|+|||+|.+..... .....+..+... .+.++++++++..
T Consensus 149 ~~vliIDEid~l~~~~~---~~l~~L~~~l~~-~~~~iIli~~~~~ 190 (516)
T 1sxj_A 149 HFVIIMDEVDGMSGGDR---GGVGQLAQFCRK-TSTPLILICNERN 190 (516)
T ss_dssp SEEEEECSGGGCCTTST---THHHHHHHHHHH-CSSCEEEEESCTT
T ss_pred CeEEEEECCCccchhhH---HHHHHHHHHHHh-cCCCEEEEEcCCC
Confidence 56899999999865321 112344444444 4677888888754
No 147
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.94 E-value=0.017 Score=49.20 Aligned_cols=36 Identities=22% Similarity=0.073 Sum_probs=25.5
Q ss_pred CCCEEEEcCCCchhhHHHHHhhh---cCCCeEEEEcchH
Q 012746 53 GRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLI 88 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~l~~l---~~~~~~lvl~P~~ 88 (457)
|+=.++.+|+|+|||...+-.+. .++.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 44467889999999976553322 3578899998874
No 148
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.82 E-value=0.06 Score=56.19 Aligned_cols=77 Identities=12% Similarity=0.025 Sum_probs=65.3
Q ss_pred CccEEEEeCCcccHHHHHHHHHhC----CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEecc-ccccCCCCCccEEEE
Q 012746 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVCH 332 (457)
Q Consensus 258 ~~~~iIf~~s~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~~~Gldip~v~~Vi~ 332 (457)
+.+++|.++++.-+.+.++.+.+. |+.+..+||+++..+|...++.+.+|+.+|+|+|.. +...+++.++.+||.
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 568999999999888888777653 789999999999999999999999999999999975 344678888888885
Q ss_pred ec
Q 012746 333 FN 334 (457)
Q Consensus 333 ~~ 334 (457)
-.
T Consensus 497 DE 498 (780)
T 1gm5_A 497 DE 498 (780)
T ss_dssp ES
T ss_pred cc
Confidence 43
No 149
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.79 E-value=0.034 Score=53.64 Aligned_cols=57 Identities=14% Similarity=0.111 Sum_probs=32.7
Q ss_pred cccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHH--HcCCCEEEEcCCCchhhHHHH
Q 012746 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAV--LSGRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~--~~~~~~lv~a~TGsGKT~~~~ 71 (457)
.....|++.+-.++..+.|++..-+.-.+| +.+..+ .-.+.+|+.||+|+|||+.+-
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p---~~f~~~g~~~prGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNP---EIFQRVGIKPPKGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCH---HHHHHHCCCCCCEEEEESCTTSSHHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCH---HHHHhCCCCCCCeEEEECCCCCcHHHHHH
Confidence 345668888766666666665311100011 111111 123679999999999998763
No 150
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.79 E-value=0.26 Score=46.67 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=14.2
Q ss_pred CEEEEcCCCchhhHHH
Q 012746 55 DCFCLMPTGGGKSMCY 70 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~ 70 (457)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6999999999999654
No 151
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.78 E-value=0.034 Score=52.52 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=20.8
Q ss_pred CCCEEEEcCCCchhhHHHHHhhhcCCCeEEEE
Q 012746 53 GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~l~~l~~~~~~lvl 84 (457)
.+.+++.+|+|+|||..+-..+-..+...+.+
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~i 148 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQSGATFFSI 148 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCeEEEE
Confidence 35799999999999976643333333333333
No 152
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.72 E-value=0.057 Score=49.74 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=14.2
Q ss_pred CEEEEcCCCchhhHHH
Q 012746 55 DCFCLMPTGGGKSMCY 70 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~ 70 (457)
++++.||+|+|||..+
T Consensus 40 ~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA 55 (319)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred eEEEECcCCcCHHHHH
Confidence 5999999999999755
No 153
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.69 E-value=0.37 Score=44.39 Aligned_cols=35 Identities=11% Similarity=-0.051 Sum_probs=23.5
Q ss_pred cCCCEEEEcCCCchhhHHHH-Hh--hhcCCCeEEEEcc
Q 012746 52 SGRDCFCLMPTGGGKSMCYQ-IP--ALAKPGIVLVVSP 86 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~-l~--~l~~~~~~lvl~P 86 (457)
.|.-+++.|++|+|||..++ ++ +...+..+++++.
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 34568889999999995433 22 2234567888874
No 154
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.65 E-value=0.42 Score=41.46 Aligned_cols=16 Identities=19% Similarity=0.098 Sum_probs=13.8
Q ss_pred CEEEEcCCCchhhHHH
Q 012746 55 DCFCLMPTGGGKSMCY 70 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~ 70 (457)
.+++.||+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999654
No 155
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.64 E-value=0.046 Score=56.93 Aligned_cols=70 Identities=10% Similarity=0.039 Sum_probs=41.5
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcCCCeEEE
Q 012746 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83 (457)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~~~~~lv 83 (457)
....|++.+..++..+.|++..-+...+|.+..-+ .+...+.+++.+|+|+|||+.+-..+-+.+...+.
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~-g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~ 541 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF-GMTPSKGVLFYGPPGCGKTLLAKAIANECQANFIS 541 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS-CCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEE
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc-CCCCCceEEEecCCCCCchHHHHHHHHHhCCceEE
Confidence 45678888888888888887533322222211100 00123579999999999998765444444444333
No 156
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.61 E-value=0.049 Score=47.83 Aligned_cols=18 Identities=11% Similarity=0.194 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCchhhHHH
Q 012746 53 GRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~ 70 (457)
+..+++.||+|+|||..+
T Consensus 52 ~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999654
No 157
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.61 E-value=0.046 Score=50.43 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCchhhHHH
Q 012746 53 GRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~ 70 (457)
++++++.||+|+|||..+
T Consensus 152 ~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999654
No 158
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.60 E-value=0.044 Score=52.94 Aligned_cols=57 Identities=12% Similarity=0.183 Sum_probs=36.1
Q ss_pred cccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHH--cCCCEEEEcCCCchhhHHHH
Q 012746 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~--~~~~~lv~a~TGsGKT~~~~ 71 (457)
.....|++.+-.++..+.|++..-+.-.+| +.+..+- -.+.+|+.+|+|+|||+.+-
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~p---e~f~~~Gi~pprGILLyGPPGTGKTlLAk 261 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSP---ERFATLGIDPPKGILLYGPPGTGKTLCAR 261 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCH---HHHHHHTCCCCSEEEECSCTTSSHHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCH---HHHHHCCCCCCCceEeeCCCCCcHHHHHH
Confidence 345789999988888888877411100011 1222221 23689999999999998763
No 159
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.58 E-value=0.065 Score=48.99 Aligned_cols=18 Identities=22% Similarity=-0.025 Sum_probs=14.9
Q ss_pred CCEEEEcCCCchhhHHHH
Q 012746 54 RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~ 71 (457)
..+++.+|+|+|||..+-
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468889999999997654
No 160
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.55 E-value=0.058 Score=51.62 Aligned_cols=57 Identities=12% Similarity=0.068 Sum_probs=34.0
Q ss_pred cccccCCCCChHHHHHHHHHHhc--CCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHH
Q 012746 12 SQTQKNKPLHEKEALVKLLRWHF--GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~l~~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~ 71 (457)
.....|++.+=-++..+.|++.. .+..+--++...+ .-.+.+|+.+|+|+|||+.+-
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLAk 234 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLAK 234 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHHH
Confidence 45677888886666666666531 1111211111111 123679999999999998763
No 161
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.40 E-value=0.034 Score=53.58 Aligned_cols=57 Identities=12% Similarity=0.089 Sum_probs=35.3
Q ss_pred cccccCCCCChHHHHHHHHHHhc--CCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHH
Q 012746 12 SQTQKNKPLHEKEALVKLLRWHF--GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~l~~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~ 71 (457)
.....|++.+-.++..+.|.+.. .+..|--++...+ .-.+.+++.||+|+|||+.+-
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTllAk 233 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLLAR 233 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHHHH
Confidence 45667888888888777777631 1111211211111 123689999999999998763
No 162
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.34 E-value=0.28 Score=47.57 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=14.9
Q ss_pred CCEEEEcCCCchhhHHH
Q 012746 54 RDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~ 70 (457)
+.+++.||+|+|||..+
T Consensus 131 ~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp CCEEEECSSSSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57999999999999654
No 163
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.34 E-value=0.063 Score=52.90 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=16.1
Q ss_pred CCEEEEcCCCchhhHHHHH
Q 012746 54 RDCFCLMPTGGGKSMCYQI 72 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~l 72 (457)
..+++.+|+|+|||..+-.
T Consensus 239 ~~vLL~GppGtGKT~lAra 257 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARA 257 (489)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred CcEEEECcCCCCHHHHHHH
Confidence 5799999999999987643
No 164
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.29 E-value=0.087 Score=45.86 Aligned_cols=37 Identities=22% Similarity=0.026 Sum_probs=26.6
Q ss_pred CCCEEEEcCCCchhhHHHHHhh---hcCCCeEEEEcchHH
Q 012746 53 GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIA 89 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~l~~---l~~~~~~lvl~P~~~ 89 (457)
|+=.++.++.|+|||...+-.+ ..++.+++++-|...
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCC
Confidence 4556778999999996654332 345788999988754
No 165
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.16 E-value=0.059 Score=51.87 Aligned_cols=56 Identities=14% Similarity=0.135 Sum_probs=31.7
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHH--HcCCCEEEEcCCCchhhHHHH
Q 012746 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAV--LSGRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~--~~~~~~lv~a~TGsGKT~~~~ 71 (457)
....|++.+--++..+.|.+..-+.-.+| +.+..+ .-.+.+++.||+|+|||+.+-
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p---~~~~~~g~~~prGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQA---DLYEQIGIDPPRGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCH---HHHHHHCCCCCCEEEEESCTTTTHHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCH---HHHHhCCCCCCceEEEECCCCCCHHHHHH
Confidence 34577787766666666665311000011 111111 123679999999999998763
No 166
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.98 E-value=0.14 Score=47.76 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=15.6
Q ss_pred CCEEEEcCCCchhhHHHH
Q 012746 54 RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~ 71 (457)
.++++.||+|+|||..+.
T Consensus 56 ~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 479999999999997653
No 167
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.96 E-value=0.39 Score=45.22 Aligned_cols=16 Identities=19% Similarity=0.098 Sum_probs=13.8
Q ss_pred CEEEEcCCCchhhHHH
Q 012746 55 DCFCLMPTGGGKSMCY 70 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~ 70 (457)
.+++.||+|+|||..+
T Consensus 40 ~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIA 55 (373)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999754
No 168
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.95 E-value=0.45 Score=44.32 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=24.2
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCC
Q 012746 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (457)
Q Consensus 159 l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~ 204 (457)
.+++|+||+|.+... ....+..+....+....+.+.++.+
T Consensus 111 ~~viiiDe~~~l~~~------~~~~L~~~le~~~~~~~~il~~n~~ 150 (340)
T 1sxj_C 111 FKLIILDEADAMTNA------AQNALRRVIERYTKNTRFCVLANYA 150 (340)
T ss_dssp CEEEEETTGGGSCHH------HHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred ceEEEEeCCCCCCHH------HHHHHHHHHhcCCCCeEEEEEecCc
Confidence 679999999998531 2345556666655433444444443
No 169
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.89 E-value=0.25 Score=46.71 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCchhhHHH
Q 012746 53 GRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~ 70 (457)
+..+++.||+|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999654
No 170
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.74 E-value=0.12 Score=49.81 Aligned_cols=79 Identities=8% Similarity=0.086 Sum_probs=64.7
Q ss_pred cCCccEEEEeCCcccHHHHHHHHHh---CCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEecccc----ccCCCCCcc
Q 012746 256 NGDTCAIVYCLERTTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG----MGIDRKDVR 328 (457)
Q Consensus 256 ~~~~~~iIf~~s~~~~~~l~~~L~~---~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~----~Gldip~v~ 328 (457)
..+.+++|.++++.-+.++++.+++ .++.+..+||+.+..++....+.+..|..+|+|+|.-.- .-++..+++
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcccccc
Confidence 3567899999999999999999988 588999999999999988889999999999999996422 124556777
Q ss_pred EEEEec
Q 012746 329 LVCHFN 334 (457)
Q Consensus 329 ~Vi~~~ 334 (457)
+||.-.
T Consensus 142 ~iViDE 147 (414)
T 3oiy_A 142 FVFVDD 147 (414)
T ss_dssp EEEESC
T ss_pred EEEEeC
Confidence 777533
No 171
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.71 E-value=0.72 Score=44.43 Aligned_cols=45 Identities=18% Similarity=0.036 Sum_probs=26.9
Q ss_pred CEEEEcCCCchhhHHHH-Hh-hh-cCCCeEEEEc--chHHHHHHHHHHHH
Q 012746 55 DCFCLMPTGGGKSMCYQ-IP-AL-AKPGIVLVVS--PLIALMENQVIGLK 99 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~-l~-~l-~~~~~~lvl~--P~~~L~~q~~~~~~ 99 (457)
-+++.+++|+|||.+.. ++ .+ .++.+++++. |.+.-+.++...+.
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~ 151 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLL 151 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHH
Confidence 46788999999996543 22 22 3356666665 55554444444443
No 172
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.61 E-value=0.21 Score=43.10 Aligned_cols=35 Identities=20% Similarity=0.081 Sum_probs=23.9
Q ss_pred cCCCEEEEcCCCchhhHHHHHhhhcCCCeEEEEcc
Q 012746 52 SGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~l~~l~~~~~~lvl~P 86 (457)
.|.-+++.+|+|+|||..+...+...+..++++.-
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~ 53 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDT 53 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEES
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEEC
Confidence 35568899999999996544322245667777763
No 173
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.60 E-value=0.13 Score=45.80 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=14.9
Q ss_pred CCEEEEcCCCchhhHHH
Q 012746 54 RDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~ 70 (457)
+.+++.+|+|+|||..+
T Consensus 46 ~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 56999999999999765
No 174
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.36 E-value=1 Score=43.24 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=27.9
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHh-CCCccEEEEeccCChhHH
Q 012746 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQ 208 (457)
Q Consensus 157 ~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~lSAT~~~~~~ 208 (457)
...+++|||++-+... +. -......+..+... .|..-++.++|+......
T Consensus 178 ~~~DvvIIDTaGr~~~-~~-d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~ 228 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGY-GE-ETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY 228 (433)
T ss_dssp TTCSEEEEEECCCSSS-CC-TTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH
T ss_pred cCCCEEEEECCCCccc-cC-CHHHHHHHHHHHHhhCCcceEEEEeCccchHHH
Confidence 3578999999976430 01 11222344443332 345567778888765443
No 175
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.32 E-value=0.49 Score=40.97 Aligned_cols=34 Identities=21% Similarity=0.112 Sum_probs=22.2
Q ss_pred cCCCEEEEcCCCchhhHHHH-Hhh--hcCCCeEEEEc
Q 012746 52 SGRDCFCLMPTGGGKSMCYQ-IPA--LAKPGIVLVVS 85 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~-l~~--l~~~~~~lvl~ 85 (457)
.|.-+++.+|+|+|||.... +.. ...++.++++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45678899999999995433 221 22356666665
No 176
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.25 E-value=0.98 Score=39.46 Aligned_cols=51 Identities=14% Similarity=-0.008 Sum_probs=31.5
Q ss_pred cCCCEEEEcCCCchhhHHHH-H--hhhcCCCeEEEEcchHHHHHHHHHHHHHcCC
Q 012746 52 SGRDCFCLMPTGGGKSMCYQ-I--PALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~-l--~~l~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 103 (457)
.|.-+++.+|+|+|||..++ + .....+..++++.-... ..+..+++..++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~-~~~~~~~~~~~g~ 75 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH-PVQVRQNMAQFGW 75 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC-HHHHHHHHHTTTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC-HHHHHHHHHHcCC
Confidence 45678899999999996533 2 22334667777764332 3455555555443
No 177
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.20 E-value=1.1 Score=41.79 Aligned_cols=17 Identities=24% Similarity=0.297 Sum_probs=14.3
Q ss_pred CEEEEcCCCchhhHHHH
Q 012746 55 DCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~ 71 (457)
++++.||+|+|||..+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCM 54 (354)
T ss_dssp CEEEECSTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 49999999999996543
No 178
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.90 E-value=0.25 Score=51.48 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=19.8
Q ss_pred CCEEEEcCCCchhhHHHHHhhhcCCCeEE
Q 012746 54 RDCFCLMPTGGGKSMCYQIPALAKPGIVL 82 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~l~~l~~~~~~l 82 (457)
+.+++.+|+|+|||+.+-..+-+.+...+
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~elg~~~~ 267 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANETGAFFF 267 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTTTTCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 57999999999999876433333333333
No 179
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=92.86 E-value=0.65 Score=42.70 Aligned_cols=17 Identities=24% Similarity=0.299 Sum_probs=15.2
Q ss_pred CCEEEEcCCCchhhHHH
Q 012746 54 RDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~ 70 (457)
..+++.||+|+|||..+
T Consensus 39 ~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCEEECCTTCCCHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 68999999999999765
No 180
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=92.55 E-value=0.16 Score=43.74 Aligned_cols=37 Identities=22% Similarity=0.025 Sum_probs=24.6
Q ss_pred CCCEEEEcCCCchhhHHHHHhh---hcCCCeEEEEcchHH
Q 012746 53 GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIA 89 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~l~~---l~~~~~~lvl~P~~~ 89 (457)
|.=.++.+|.|+|||...+-.+ ..++.+++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccC
Confidence 4446788999999996544222 234778899988654
No 181
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.53 E-value=0.28 Score=45.83 Aligned_cols=50 Identities=6% Similarity=-0.069 Sum_probs=29.1
Q ss_pred CCEEEEcCCCchhhHHHHHhhh---c------CCCeEEEEcchHHH-HHHHHHHHHHcCC
Q 012746 54 RDCFCLMPTGGGKSMCYQIPAL---A------KPGIVLVVSPLIAL-MENQVIGLKEKGI 103 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~l~~l---~------~~~~~lvl~P~~~L-~~q~~~~~~~~~~ 103 (457)
.-+++.+|+|+|||..++-.+. . .++.++++.-...+ ..+....+..++.
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~ 182 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNV 182 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCC
Confidence 4578899999999965442222 1 35678888754321 2233344455543
No 182
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.40 E-value=1.7 Score=41.38 Aligned_cols=17 Identities=18% Similarity=0.145 Sum_probs=13.8
Q ss_pred CCEEE--EcCCCchhhHHH
Q 012746 54 RDCFC--LMPTGGGKSMCY 70 (457)
Q Consensus 54 ~~~lv--~a~TGsGKT~~~ 70 (457)
..+++ .||+|+|||...
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 35777 899999999754
No 183
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=92.23 E-value=0.21 Score=54.46 Aligned_cols=78 Identities=6% Similarity=0.062 Sum_probs=65.3
Q ss_pred cCCccEEEEeCCcccHHHHHHHHHh---CCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEecc-----ccccCCCCCc
Q 012746 256 NGDTCAIVYCLERTTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGMGIDRKDV 327 (457)
Q Consensus 256 ~~~~~~iIf~~s~~~~~~l~~~L~~---~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~Gldip~v 327 (457)
..+.++||.+++++-+.++++.+++ .++.+..+||+.+..+|....+.+.+|..+|+|+|.- +.. +++.++
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l 197 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRF 197 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCC
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCc
Confidence 3567899999999999999999998 4678999999999988888899999999999999963 222 556788
Q ss_pred cEEEEec
Q 012746 328 RLVCHFN 334 (457)
Q Consensus 328 ~~Vi~~~ 334 (457)
++||.-.
T Consensus 198 ~~lViDE 204 (1104)
T 4ddu_A 198 DFVFVDD 204 (1104)
T ss_dssp SEEEESC
T ss_pred CEEEEeC
Confidence 8888644
No 184
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.57 E-value=2.3 Score=41.09 Aligned_cols=36 Identities=11% Similarity=-0.088 Sum_probs=24.1
Q ss_pred cCCCEEEEcCCCchhhHHHHH---hhhcCCCeEEEEcch
Q 012746 52 SGRDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPL 87 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~l---~~l~~~~~~lvl~P~ 87 (457)
.|.-+++.|++|+|||..++- .+...+..+++++.-
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 345588899999999965432 222346788888753
No 185
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=91.41 E-value=0.27 Score=48.12 Aligned_cols=18 Identities=22% Similarity=0.475 Sum_probs=15.4
Q ss_pred CCEEEEcCCCchhhHHHH
Q 012746 54 RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~ 71 (457)
+.+++.+|+|+|||..+-
T Consensus 50 ~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 569999999999997653
No 186
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=91.12 E-value=3.9 Score=37.62 Aligned_cols=18 Identities=22% Similarity=-0.116 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCchhhHHH
Q 012746 53 GRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~ 70 (457)
++.+++.||.|+|||...
T Consensus 31 ~~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp CSEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCcCCHHHHH
Confidence 577899999999999653
No 187
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=91.02 E-value=0.61 Score=41.24 Aligned_cols=56 Identities=14% Similarity=0.092 Sum_probs=29.3
Q ss_pred cccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHH--cCCCEEEEcCCCchhhHHHH
Q 012746 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~--~~~~~lv~a~TGsGKT~~~~ 71 (457)
.....|+++.-.++....+++... . + .....+..+- -.+.+++.+|+|+|||...-
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~-~-~--~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVE-F-L--KNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHH-H-H--HCHHHHHHTTCCCCSEEEEECCTTSSHHHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHH-H-H--HCHHHHHHcCCCCCCeEEEECCCCCCHHHHHH
Confidence 344566666655555555544210 0 0 0012222221 12358999999999996543
No 188
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=90.94 E-value=0.71 Score=50.56 Aligned_cols=77 Identities=9% Similarity=0.098 Sum_probs=64.7
Q ss_pred cCCccEEEEeCCcccHHHHHHHHHhC----CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEecc-ccccCCCCCccEE
Q 012746 256 NGDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLV 330 (457)
Q Consensus 256 ~~~~~~iIf~~s~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~~~Gldip~v~~V 330 (457)
..+.+++|.++|+.-+.+.++.+.+. ++.+..+++..+..++...++.+.+|+.+|+|+|.. +...+++.++.+|
T Consensus 650 ~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lv 729 (1151)
T 2eyq_A 650 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLL 729 (1151)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEE
T ss_pred HhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceE
Confidence 34568999999999998888888743 578899999999999999999999999999999954 5556888888887
Q ss_pred EE
Q 012746 331 CH 332 (457)
Q Consensus 331 i~ 332 (457)
|.
T Consensus 730 Ii 731 (1151)
T 2eyq_A 730 IV 731 (1151)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 189
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=90.87 E-value=0.6 Score=48.79 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCchhhHHH
Q 012746 53 GRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~ 70 (457)
+.++++.+|+|+|||..+
T Consensus 207 ~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEcCCCCCHHHHH
Confidence 468999999999999765
No 190
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=90.77 E-value=0.22 Score=42.08 Aligned_cols=35 Identities=23% Similarity=0.050 Sum_probs=24.3
Q ss_pred CCCEEEEcCCCchhhHHHHHhh---hcCCCeEEEEcch
Q 012746 53 GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPL 87 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~l~~---l~~~~~~lvl~P~ 87 (457)
|+=.++.+|+|+|||.-.+-.+ ..++.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 4557789999999994433222 2347788999887
No 191
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=90.74 E-value=0.39 Score=44.12 Aligned_cols=20 Identities=10% Similarity=0.007 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCchhhHHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~ 71 (457)
.+..+++.+|+|+|||..++
T Consensus 122 ~gsviLI~GpPGsGKTtLAl 141 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVH 141 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 44567899999999996543
No 192
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=90.47 E-value=0.2 Score=40.23 Aligned_cols=20 Identities=10% Similarity=0.135 Sum_probs=17.1
Q ss_pred cCCCEEEEcCCCchhhHHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~ 71 (457)
.+.++++.+|+|+|||..+-
T Consensus 23 ~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHH
Confidence 45789999999999997664
No 193
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=90.36 E-value=0.7 Score=42.71 Aligned_cols=51 Identities=14% Similarity=0.045 Sum_probs=29.7
Q ss_pred CCCEEEEcCCCchhhHHHHHhhh---cC------CCeEEEEcchHHH-HHHHHHHHHHcCC
Q 012746 53 GRDCFCLMPTGGGKSMCYQIPAL---AK------PGIVLVVSPLIAL-MENQVIGLKEKGI 103 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~l~~l---~~------~~~~lvl~P~~~L-~~q~~~~~~~~~~ 103 (457)
|.-+++.+|+|+|||..++-.+. .. +..++++.--..+ ..+..+.+..++.
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~ 167 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGL 167 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTC
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCC
Confidence 35688999999999965442222 12 5678887654322 2334444455544
No 194
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.21 E-value=0.059 Score=47.71 Aligned_cols=50 Identities=16% Similarity=0.013 Sum_probs=30.0
Q ss_pred cCCCEEEEcCCCchhhHHHH-Hh---hhcCCCeEEEEcchHHHHHHHHHHHHHcC
Q 012746 52 SGRDCFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVSPLIALMENQVIGLKEKG 102 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~-l~---~l~~~~~~lvl~P~~~L~~q~~~~~~~~~ 102 (457)
.|.-+++.|++|+|||..++ +. +...+..+++++-.. -..+..+++...+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~-~~~~~~~~~~~~~ 82 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE-RARDLRREMASFG 82 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS-CHHHHHHHHHTTT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccC-CHHHHHHHHHHcC
Confidence 45668899999999995433 22 223356677776432 2345555555543
No 195
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=89.85 E-value=3.4 Score=37.65 Aligned_cols=32 Identities=13% Similarity=0.172 Sum_probs=19.7
Q ss_pred CCEEEEcCCCchhhHHHH-Hhhh--cCCCeEEEEc
Q 012746 54 RDCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVS 85 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~-l~~l--~~~~~~lvl~ 85 (457)
+-+++.+|+|+|||.... ++.. ..+++++++.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 346789999999995443 3322 2355555544
No 196
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=89.81 E-value=5.7 Score=36.55 Aligned_cols=17 Identities=24% Similarity=0.032 Sum_probs=14.4
Q ss_pred CCEEEEcCCCchhhHHH
Q 012746 54 RDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~ 70 (457)
..+++.||.|+|||...
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57889999999999653
No 197
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=89.77 E-value=0.83 Score=42.94 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=16.8
Q ss_pred CCCEEEEcCCCchhhHHHHH
Q 012746 53 GRDCFCLMPTGGGKSMCYQI 72 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~l 72 (457)
..++++.+|+|+|||..+-.
T Consensus 51 ~~~vll~GppGtGKT~la~~ 70 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAET 70 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46899999999999987643
No 198
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.60 E-value=0.46 Score=54.35 Aligned_cols=44 Identities=20% Similarity=0.170 Sum_probs=31.1
Q ss_pred HHHHHc------CCCEEEEcCCCchhhHHHH---HhhhcCCCeEEEEcchHHH
Q 012746 47 IQAVLS------GRDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIAL 90 (457)
Q Consensus 47 i~~~~~------~~~~lv~a~TGsGKT~~~~---l~~l~~~~~~lvl~P~~~L 90 (457)
+..++. ++++++.+|+|+|||..+. ..+..++.+++++..-..+
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 1467 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccccc
Confidence 555555 6789999999999996553 2334457788888866443
No 199
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=89.36 E-value=1.8 Score=37.69 Aligned_cols=20 Identities=15% Similarity=0.042 Sum_probs=16.0
Q ss_pred cCCCEEEEcCCCchhhHHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~ 71 (457)
.|.-+.+.+|+|+|||....
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHH
Confidence 45678899999999996544
No 200
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=89.17 E-value=1.7 Score=38.28 Aligned_cols=73 Identities=18% Similarity=0.302 Sum_probs=51.6
Q ss_pred cCCccEEEEeCCcccHHHHHHHHHhC----CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEecc-----cc--ccCCC
Q 012746 256 NGDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FG--MGIDR 324 (457)
Q Consensus 256 ~~~~~~iIf~~s~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~--~Gldi 324 (457)
..+.++||.+++++-+.++++.+++. ++.+..++|+.+...+...+ .+..+|+|+|.- +. .++++
T Consensus 109 ~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l 184 (249)
T 3ber_A 109 PQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNL 184 (249)
T ss_dssp CCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCC
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCc
Confidence 34567999999999999888877654 78889999998865543322 356789999952 11 24556
Q ss_pred CCccEEEE
Q 012746 325 KDVRLVCH 332 (457)
Q Consensus 325 p~v~~Vi~ 332 (457)
.++++||.
T Consensus 185 ~~~~~lVi 192 (249)
T 3ber_A 185 RALKYLVM 192 (249)
T ss_dssp TTCCEEEE
T ss_pred cccCEEEE
Confidence 66666664
No 201
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=88.91 E-value=0.88 Score=40.89 Aligned_cols=54 Identities=13% Similarity=0.035 Sum_probs=28.8
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCCCCCHHH-HHHHHHHH--cCCCEEEEcCCCchhhHHHH
Q 012746 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQ-LDAIQAVL--SGRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q-~~~i~~~~--~~~~~lv~a~TGsGKT~~~~ 71 (457)
....|+++.-.++....+++..- .+. ...+..+- -.+.+++.+|+|+|||..+-
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~-----~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVE-----FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHH-----HHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHH-----HHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHH
Confidence 34556666655665555554210 010 11222221 12358999999999996543
No 202
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=88.88 E-value=1.4 Score=46.77 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=15.3
Q ss_pred CCEEEEcCCCchhhHHHH
Q 012746 54 RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~ 71 (457)
.++++.||+|+|||....
T Consensus 192 ~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CCCEEEECTTSCHHHHHH
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 579999999999997553
No 203
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=88.67 E-value=0.85 Score=47.90 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=16.6
Q ss_pred CCCEEEEcCCCchhhHHHHH
Q 012746 53 GRDCFCLMPTGGGKSMCYQI 72 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~l 72 (457)
++.+++.+|+|+|||..+-.
T Consensus 238 ~~~vLL~Gp~GtGKTtLara 257 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARA 257 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHH
Confidence 56799999999999976543
No 204
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=88.54 E-value=0.75 Score=45.69 Aligned_cols=59 Identities=10% Similarity=0.137 Sum_probs=54.6
Q ss_pred CccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEec
Q 012746 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (457)
Q Consensus 258 ~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~ 316 (457)
.+.+||.++++.-+....+.|++.|+.+..+|++.+..++......+..|..+|+++|.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 46799999999999999999999999999999999999999999999999999999995
No 205
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=88.46 E-value=1.1 Score=44.13 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=15.1
Q ss_pred CCEEEEcCCCchhhHHHH
Q 012746 54 RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~ 71 (457)
+.+++.+|+|+|||..+-
T Consensus 65 ~GvLL~GppGtGKTtLar 82 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLAR 82 (499)
T ss_dssp SEEEEECSSSSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 459999999999997653
No 206
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=88.37 E-value=1.4 Score=37.73 Aligned_cols=72 Identities=17% Similarity=0.210 Sum_probs=51.6
Q ss_pred CccEEEEeCCcccHHHHHHHHHhC-----CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccc------cccCCCCC
Q 012746 258 DTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------GMGIDRKD 326 (457)
Q Consensus 258 ~~~~iIf~~s~~~~~~l~~~L~~~-----g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~------~~Gldip~ 326 (457)
..+++|.+++++-+.++++.+++. +..+..++|+.+...+.. .+.++..+|+|+|.-. ...+++.+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 347999999999999988887764 678999999988765543 4455777899999521 12345555
Q ss_pred ccEEEE
Q 012746 327 VRLVCH 332 (457)
Q Consensus 327 v~~Vi~ 332 (457)
++++|.
T Consensus 159 ~~~lVi 164 (220)
T 1t6n_A 159 IKHFIL 164 (220)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 666554
No 207
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.35 E-value=6.4 Score=35.13 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=17.4
Q ss_pred HHcCCCEEEEcCCCchhhHHHH
Q 012746 50 VLSGRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 50 ~~~~~~~lv~a~TGsGKT~~~~ 71 (457)
+..|.-+++.+|+|+|||..+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~ 48 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLAL 48 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHH
Confidence 4467778999999999996543
No 208
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.19 E-value=2.6 Score=38.10 Aligned_cols=34 Identities=18% Similarity=0.069 Sum_probs=21.9
Q ss_pred cCCCEEEEcCCCchhhHHHH-Hhhh--cC-CCeEEEEc
Q 012746 52 SGRDCFCLMPTGGGKSMCYQ-IPAL--AK-PGIVLVVS 85 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~-l~~l--~~-~~~~lvl~ 85 (457)
.|.-+++.||+|+|||.... +... .. +..++++.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 56678899999999996543 2221 12 43676665
No 209
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=87.86 E-value=2.2 Score=35.06 Aligned_cols=80 Identities=15% Similarity=0.161 Sum_probs=59.4
Q ss_pred EEEcCCCchhhHHHHHhhhc--CCCeEEEEcchHHHHHHHHHHHHHcCCceeEecCCCcHHHHHHHHHHhhcCCCcccEE
Q 012746 57 FCLMPTGGGKSMCYQIPALA--KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLL 134 (457)
Q Consensus 57 lv~a~TGsGKT~~~~l~~l~--~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 134 (457)
.+..+....|-. .+..++. ..+++||.++++..+....+.+...|.....+++......+.........+. .+++
T Consensus 12 ~~~~~~~~~K~~-~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~--~~vL 88 (175)
T 2rb4_A 12 YVLCEHRKDKYQ-ALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK--EKVL 88 (175)
T ss_dssp EEECSSHHHHHH-HHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS--CSEE
T ss_pred EEEcCChHhHHH-HHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC--CeEE
Confidence 334444334543 2333333 3678999999999999999999999999999999998888888877777665 7788
Q ss_pred EECCC
Q 012746 135 YVTPE 139 (457)
Q Consensus 135 ~~t~~ 139 (457)
++|..
T Consensus 89 vaT~~ 93 (175)
T 2rb4_A 89 ITTNV 93 (175)
T ss_dssp EECCS
T ss_pred EEecc
Confidence 88743
No 210
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=87.73 E-value=2.3 Score=34.55 Aligned_cols=60 Identities=12% Similarity=0.210 Sum_probs=50.9
Q ss_pred CCCeEEEEcchHHHHHHHHHHHHHcCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECC
Q 012746 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (457)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~ 138 (457)
..+++||.++++.-+....+.+...|.....+++......+.........+. .+++++|.
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~--~~vlv~T~ 93 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGE--YRYLVATD 93 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS--CSEEEECG
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC--CeEEEECC
Confidence 3678999999999999999999999999999999988888887777777665 67777773
No 211
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=87.54 E-value=2.1 Score=42.14 Aligned_cols=46 Identities=13% Similarity=-0.088 Sum_probs=27.5
Q ss_pred cCCCEEEEcCCCchhhHHHH-H--hhhcC-CCeEEEEcchHHHHHHHHHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCYQ-I--PALAK-PGIVLVVSPLIALMENQVIGL 98 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~-l--~~l~~-~~~~lvl~P~~~L~~q~~~~~ 98 (457)
.|.-+++.|++|+|||...+ + .+... +..+++++--.. ..|...++
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s-~~~l~~r~ 290 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDL 290 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC-HHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC-HHHHHHHH
Confidence 44568889999999996543 2 22223 567888764322 23444444
No 212
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=87.52 E-value=0.79 Score=46.28 Aligned_cols=59 Identities=19% Similarity=0.180 Sum_probs=53.7
Q ss_pred CccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHH--hcCCceEEEEec
Q 012746 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDW--ISSRKQVVVATV 316 (457)
Q Consensus 258 ~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f--~~g~~~vLvaT~ 316 (457)
.+.+||.++++.-+++..+.|.+.|+.+..++|+.+..++..+...+ ..+..+|+++|.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 46799999999999999999999999999999999999998888888 478899999997
No 213
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=87.06 E-value=4.9 Score=33.61 Aligned_cols=72 Identities=24% Similarity=0.255 Sum_probs=55.4
Q ss_pred CchhhHHHHHhhhc-CCCeEEEEcchHHHHHHHHHHHHHcCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEEC
Q 012746 63 GGGKSMCYQIPALA-KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137 (457)
Q Consensus 63 GsGKT~~~~l~~l~-~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t 137 (457)
...|.. +++..+. .++++||.++++.-+....+.++..|..+..+++......+.........+. .+++++|
T Consensus 39 ~~~K~~-~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~--~~vLvaT 111 (191)
T 2p6n_A 39 EEAKMV-YLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGK--KDVLVAT 111 (191)
T ss_dssp GGGHHH-HHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTS--CSEEEEC
T ss_pred hHHHHH-HHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC--CEEEEEc
Confidence 356653 3344443 3678999999999999999999999999999999988888887777777665 5666655
No 214
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=87.02 E-value=3.3 Score=37.56 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=20.3
Q ss_pred CCCEEEEcCCCchhhHHHH-Hhh-hc--CCCeEEEEc
Q 012746 53 GRDCFCLMPTGGGKSMCYQ-IPA-LA--KPGIVLVVS 85 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~-l~~-l~--~~~~~lvl~ 85 (457)
++-+.+.+|+|+|||.... ++. +. .+.+++++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3467789999999996543 322 22 344555543
No 215
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=86.76 E-value=5.8 Score=38.68 Aligned_cols=30 Identities=13% Similarity=0.132 Sum_probs=19.4
Q ss_pred CEEEEcCCCchhhHHHH-Hhhh--cCCCeEEEE
Q 012746 55 DCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVV 84 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~-l~~l--~~~~~~lvl 84 (457)
-+.+.+++|+|||...- +..+ ..++.+++.
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 46789999999996432 2222 235666665
No 216
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=86.70 E-value=0.86 Score=45.47 Aligned_cols=19 Identities=26% Similarity=0.214 Sum_probs=16.2
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 012746 53 GRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~ 71 (457)
+..+++.+|+|+|||..+-
T Consensus 108 g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp SCEEEEESSSSSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5679999999999997653
No 217
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=86.56 E-value=1.7 Score=37.97 Aligned_cols=72 Identities=8% Similarity=0.111 Sum_probs=51.6
Q ss_pred CCccEEEEeCCcccHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEec-----cccc-cCCCCC
Q 012746 257 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGM-GIDRKD 326 (457)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~----~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~-Gldip~ 326 (457)
.+.++||.+++++-+.++++.+++ .++.+..++|+.+...+...+.. ..+|+|+|. .+.. .+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCccc
Confidence 356799999999999888777765 37889999999987765544432 478999995 2222 345666
Q ss_pred ccEEEE
Q 012746 327 VRLVCH 332 (457)
Q Consensus 327 v~~Vi~ 332 (457)
++++|.
T Consensus 177 ~~~lVi 182 (242)
T 3fe2_A 177 TTYLVL 182 (242)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 776664
No 218
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=86.34 E-value=2.3 Score=39.95 Aligned_cols=43 Identities=19% Similarity=0.166 Sum_probs=27.1
Q ss_pred HHHHHHHc------CCCEEEEcCCCchhhHHHHHhh---hcCCCeEEEEcch
Q 012746 45 DAIQAVLS------GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPL 87 (457)
Q Consensus 45 ~~i~~~~~------~~~~lv~a~TGsGKT~~~~l~~---l~~~~~~lvl~P~ 87 (457)
..+..++. |.-+++.+|+|+|||..++-.+ ...+..++++..-
T Consensus 60 ~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 60 LSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 34555555 3467889999999996543221 2345677777654
No 219
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=86.33 E-value=3.1 Score=34.17 Aligned_cols=61 Identities=11% Similarity=0.053 Sum_probs=51.9
Q ss_pred CCCeEEEEcchHHHHHHHHHHHHHcCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCC
Q 012746 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139 (457)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~ 139 (457)
...++||.++++.-+....+.+...+..+..+++......+.........+. .+++++|..
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~--~~vLvaT~~ 90 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ--RRILVATNL 90 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS--CSEEEESSC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC--CcEEEECCc
Confidence 3578999999999999999999999999999999998888887777777665 778888843
No 220
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=86.04 E-value=1.4 Score=39.91 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=16.2
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 012746 53 GRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~ 71 (457)
..++++.||+|+|||..+-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5689999999999997653
No 221
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=86.01 E-value=0.94 Score=48.00 Aligned_cols=16 Identities=38% Similarity=0.426 Sum_probs=14.3
Q ss_pred CEEEEcCCCchhhHHH
Q 012746 55 DCFCLMPTGGGKSMCY 70 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~ 70 (457)
.+++.||||+|||..+
T Consensus 590 ~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEBSCSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999765
No 222
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=85.53 E-value=0.39 Score=43.28 Aligned_cols=55 Identities=15% Similarity=0.144 Sum_probs=30.2
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCCCCCHHH-HHHHHHHH--cCCCEEEEcCCCchhhHHHH
Q 012746 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQ-LDAIQAVL--SGRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q-~~~i~~~~--~~~~~lv~a~TGsGKT~~~~ 71 (457)
....|++++-.+++.+.|++.. ..|+. .+++..+- -.+.+++.+|+|+|||..+-
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i----~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLak 62 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAI----LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAK 62 (274)
T ss_dssp -------CCHHHHHHHHHHHHH----THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH----HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHH
Confidence 4567899998888888887642 12222 12333221 12349999999999997653
No 223
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=85.41 E-value=2.8 Score=34.08 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=50.5
Q ss_pred CCCeEEEEcchHHHHHHHHHHHHHcCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECC
Q 012746 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (457)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~ 138 (457)
..+++||.++++.-+....+.+...+.....+++......+.........+. .+++++|.
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vlv~T~ 88 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS--SRILISTD 88 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS--CSEEEEEG
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCC--CEEEEEcC
Confidence 4678999999999999999999999999999999988888887777777665 67777763
No 224
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=85.41 E-value=0.85 Score=44.87 Aligned_cols=28 Identities=36% Similarity=0.411 Sum_probs=21.6
Q ss_pred HHHHHHHHcCCCEEEEcCCCchhhHHHH
Q 012746 44 LDAIQAVLSGRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 44 ~~~i~~~~~~~~~lv~a~TGsGKT~~~~ 71 (457)
..+...+..+.++++.||+|+|||..+-
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHHHH
Confidence 3344555678899999999999997654
No 225
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=85.38 E-value=2.5 Score=39.39 Aligned_cols=43 Identities=23% Similarity=0.231 Sum_probs=27.4
Q ss_pred HHHHHHHc------CCCEEEEcCCCchhhHHHHHh---hhcCCCeEEEEcch
Q 012746 45 DAIQAVLS------GRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPL 87 (457)
Q Consensus 45 ~~i~~~~~------~~~~lv~a~TGsGKT~~~~l~---~l~~~~~~lvl~P~ 87 (457)
..+..++. |.-+++.+|+|+|||..++-. +...++.++++.--
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 34555665 355888999999999654322 22346677777643
No 226
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=85.23 E-value=1.4 Score=38.27 Aligned_cols=55 Identities=15% Similarity=0.262 Sum_probs=43.1
Q ss_pred CCccEEEEeCCcccHHHHHHHHHhC-----CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEec
Q 012746 257 GDTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (457)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~-----g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~ 316 (457)
.+.++||.+++++-+.++++.+++. ++.+..++|+.+..++...+ ...+|+|+|.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp 150 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSP 150 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECH
Confidence 4568999999999999999888764 67788999998876654432 3578999986
No 227
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=85.21 E-value=1 Score=38.60 Aligned_cols=35 Identities=23% Similarity=0.180 Sum_probs=27.6
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHH
Q 012746 36 HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 36 ~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 70 (457)
+..-+..|..++..+..|.-+.+.+|.|+|||...
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 34445567778888888888999999999999643
No 228
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=85.08 E-value=1.4 Score=43.49 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=22.8
Q ss_pred CCHHHHHHHHH-HHcCCCEEEEcCCCchhhHH
Q 012746 39 FRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMC 69 (457)
Q Consensus 39 ~~~~Q~~~i~~-~~~~~~~lv~a~TGsGKT~~ 69 (457)
+.+.+...+.. +..|..+++.+|||||||..
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 45555555544 34678899999999999954
No 229
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=85.03 E-value=3.4 Score=35.32 Aligned_cols=61 Identities=20% Similarity=0.267 Sum_probs=52.6
Q ss_pred CCCeEEEEcchHHHHHHHHHHHHHcCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCC
Q 012746 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139 (457)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~ 139 (457)
.++++||.+|++.-+....+.+...|.....+++......+.........+. .+++++|..
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~--~~vlvaT~~ 90 (212)
T 3eaq_A 30 SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGE--VRVLVATDV 90 (212)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSS--CCEEEECTT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCC--CeEEEecCh
Confidence 4789999999999999999999999999999999999888888887777765 778888753
No 230
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=84.89 E-value=1.3 Score=40.53 Aligned_cols=46 Identities=13% Similarity=0.041 Sum_probs=29.1
Q ss_pred CEEEEcCCCchhhHHHHHh---hhcC--CCeEEEEcchHHHHHHHHHHHHHcCC
Q 012746 55 DCFCLMPTGGGKSMCYQIP---ALAK--PGIVLVVSPLIALMENQVIGLKEKGI 103 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~l~---~l~~--~~~~lvl~P~~~L~~q~~~~~~~~~~ 103 (457)
-+++.+|+|+|||...+-. +... +++++++..-.++.. .+++++|+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~---~ra~~lGv 80 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITP---AYLRSMGV 80 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCH---HHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhH---HHHHHhCC
Confidence 5788999999999654322 2222 678888876555432 23555654
No 231
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=84.61 E-value=1.8 Score=39.87 Aligned_cols=18 Identities=17% Similarity=0.006 Sum_probs=14.4
Q ss_pred CCEEEEcCCCchhhHHHH
Q 012746 54 RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~ 71 (457)
.-+++.+|+|+|||..++
T Consensus 99 ~i~~i~G~~gsGKT~la~ 116 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMH 116 (322)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457889999999996543
No 232
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=84.29 E-value=2.9 Score=39.05 Aligned_cols=61 Identities=13% Similarity=0.106 Sum_probs=36.4
Q ss_pred HHHHHHHhcCCCCCCHHH-------------HHHHHHHHc------CCCEEEEcCCCchhhHHHHHhh---hcCCCeEEE
Q 012746 26 LVKLLRWHFGHAQFRDKQ-------------LDAIQAVLS------GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLV 83 (457)
Q Consensus 26 ~~~~l~~~~g~~~~~~~Q-------------~~~i~~~~~------~~~~lv~a~TGsGKT~~~~l~~---l~~~~~~lv 83 (457)
....+.+.||-..+.+.. ...+..++. |.-+++.+++|+|||..++-.+ ...+..+++
T Consensus 17 ~~~~i~~~~~~~~~~~l~~~~~~~~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vly 96 (356)
T 1u94_A 17 ALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAF 96 (356)
T ss_dssp HHHHHHHHHCTTSSCCTTCCCBCCCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHhhCCCCceEccccccccCCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 344455557766543322 134555564 3568889999999996554222 234567777
Q ss_pred Ecc
Q 012746 84 VSP 86 (457)
Q Consensus 84 l~P 86 (457)
+..
T Consensus 97 id~ 99 (356)
T 1u94_A 97 IDA 99 (356)
T ss_dssp EES
T ss_pred EeC
Confidence 765
No 233
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=84.24 E-value=1.5 Score=42.84 Aligned_cols=76 Identities=13% Similarity=0.003 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCC
Q 012746 246 YADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325 (457)
Q Consensus 246 ~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip 325 (457)
+..|..+++.. +.+++|.+.|...++++.+.|.+.|+.+..... .. .+..| .|.++...++.|.-+|
T Consensus 371 ~~~L~~~~~~~-~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~-~~---------~~~~g--~v~i~~g~L~~GF~~p 437 (483)
T 3hjh_A 371 LDALRKFLETF-DGPVVFSVESEGRREALGELLARIKIAPQRIMR-LD---------EASDR--GRYLMIGAAEHGFVDT 437 (483)
T ss_dssp THHHHHHHHHC-CSCEEEEESCSSTTTTTHHHHGGGTCCCEECSC-GG---------GCCTT--CEEEEESCCCSCEEET
T ss_pred HHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHHHHcCCCceecCc-hh---------hcCCC--cEEEEEcccccCcccC
Confidence 45666666543 467999999999999999999988876544322 11 11233 4677778899999999
Q ss_pred CccEEEEec
Q 012746 326 DVRLVCHFN 334 (457)
Q Consensus 326 ~v~~Vi~~~ 334 (457)
+.++++..+
T Consensus 438 ~~klaVITE 446 (483)
T 3hjh_A 438 VRNLALICE 446 (483)
T ss_dssp TTTEEEEEH
T ss_pred CCCEEEEEc
Confidence 888888764
No 234
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=84.23 E-value=4.6 Score=39.11 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=19.5
Q ss_pred HHHHHH---cCCCEEEEcCCCchhhHHH
Q 012746 46 AIQAVL---SGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 46 ~i~~~~---~~~~~lv~a~TGsGKT~~~ 70 (457)
++..+. +|+.+++.+|.|+|||...
T Consensus 141 ~ID~L~pi~kGq~~~i~G~sGvGKTtL~ 168 (473)
T 1sky_E 141 VVDLLAPYIKGGKIGLFGGAGVGKTVLI 168 (473)
T ss_dssp HHHHHSCEETTCEEEEECCSSSCHHHHH
T ss_pred HHHHHhhhccCCEEEEECCCCCCccHHH
Confidence 454443 6889999999999999654
No 235
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=83.65 E-value=1.2 Score=41.16 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=19.1
Q ss_pred HHHHcCCCEEEEcCCCchhhHHHH
Q 012746 48 QAVLSGRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 48 ~~~~~~~~~lv~a~TGsGKT~~~~ 71 (457)
..+..++++++.+|+|+|||..+.
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHHH
Confidence 344467899999999999997553
No 236
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=83.52 E-value=6.7 Score=37.24 Aligned_cols=34 Identities=18% Similarity=0.113 Sum_probs=22.0
Q ss_pred CCCEEEEcCCCchhhHHHH-Hh--hhc------CCCeEEEEcc
Q 012746 53 GRDCFCLMPTGGGKSMCYQ-IP--ALA------KPGIVLVVSP 86 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~-l~--~l~------~~~~~lvl~P 86 (457)
|.-+.+.+|+|+|||.... +. ... .+..++++.-
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 4568889999999996544 22 121 2456777754
No 237
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=82.70 E-value=1.9 Score=37.43 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=40.3
Q ss_pred CCccEEEEeCCcccHHHHHHHHHhC----CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEec
Q 012746 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (457)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~ 316 (457)
.+.+++|.+++++-+.++++.+++. ++.+..++|+.+.......+ +..+|+|+|.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp 154 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTP 154 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECH
Confidence 4567999999999999999888764 47788899987654433322 4678999995
No 238
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=82.60 E-value=2.8 Score=35.33 Aligned_cols=56 Identities=21% Similarity=0.159 Sum_probs=41.9
Q ss_pred CCccEEEEeCCcccHHHHHHHHHhC-----CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEec
Q 012746 257 GDTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (457)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~-----g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~ 316 (457)
.+.+++|.++++.-+.++++.+++. +..+..++|+.+..+.... ..+..+|+|+|.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~i~v~T~ 130 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR----LDDTVHVVIATP 130 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH----TTSCCSEEEECH
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh----cCCCCCEEEeCH
Confidence 3457999999999999988888653 5778889998876544322 235678999996
No 239
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=82.38 E-value=0.78 Score=42.41 Aligned_cols=18 Identities=28% Similarity=0.157 Sum_probs=14.7
Q ss_pred CCEEEEcCCCchhhHHHH
Q 012746 54 RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~ 71 (457)
+-+++.+|||+|||....
T Consensus 41 ~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458899999999997653
No 240
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=82.34 E-value=1.8 Score=37.76 Aligned_cols=73 Identities=19% Similarity=0.276 Sum_probs=44.0
Q ss_pred CCccEEEEeCCcccHHHHHHHHHhC----CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEec-----ccccc-CCCCC
Q 012746 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGMG-IDRKD 326 (457)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G-ldip~ 326 (457)
.+.++||.+++++-+.++++.+++. +..+..++|+.+... ..+.+..+..+|+|+|. .+..+ +++.+
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 4568999999999999998888764 566777888765433 23445567789999994 33332 45556
Q ss_pred ccEEEE
Q 012746 327 VRLVCH 332 (457)
Q Consensus 327 v~~Vi~ 332 (457)
+++||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 666654
No 241
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=82.23 E-value=0.9 Score=43.91 Aligned_cols=41 Identities=22% Similarity=0.252 Sum_probs=31.1
Q ss_pred cCCCEEEEcCCCchhhHHH--HHhh-hcCCCeEEEEcchHHHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCY--QIPA-LAKPGIVLVVSPLIALME 92 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~--~l~~-l~~~~~~lvl~P~~~L~~ 92 (457)
...++++.|+||+|||... +++- +..+..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchhH
Confidence 3468999999999999865 3332 345778888889888754
No 242
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=82.14 E-value=3.4 Score=34.38 Aligned_cols=73 Identities=18% Similarity=0.150 Sum_probs=47.2
Q ss_pred CchhhHHHHHhhh---cCCCeEEEEcchHHHHHHHHHHHHHcCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECC
Q 012746 63 GGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (457)
Q Consensus 63 GsGKT~~~~l~~l---~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~ 138 (457)
...|... ++.++ ..+.++||.++++.-+....+.++..|..+..+++......+.........+. .+++++|.
T Consensus 29 ~~~K~~~-L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~--~~vLvaT~ 104 (185)
T 2jgn_A 29 ESDKRSF-LLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK--SPILVATA 104 (185)
T ss_dssp GGGHHHH-HHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTS--SSEEEEEC
T ss_pred cHHHHHH-HHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCC--CeEEEEcC
Confidence 4566532 33333 24678999999999999999999999999988888877776666666666655 66766663
No 243
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=81.94 E-value=3.5 Score=38.75 Aligned_cols=20 Identities=30% Similarity=0.497 Sum_probs=16.5
Q ss_pred CCCEEEEcCCCchhhHHHHH
Q 012746 53 GRDCFCLMPTGGGKSMCYQI 72 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~l 72 (457)
..++++.+|+|+|||..+..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~ 91 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQT 91 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHH
Confidence 35799999999999976643
No 244
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=81.93 E-value=6 Score=44.75 Aligned_cols=35 Identities=14% Similarity=0.042 Sum_probs=23.3
Q ss_pred CCCEEEEcCCCchhhHHHHHhh---hcCCCeEEEEcch
Q 012746 53 GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPL 87 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~l~~---l~~~~~~lvl~P~ 87 (457)
|..+++.+|+|+|||..++-.+ ...+..++++.--
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~E 769 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 769 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEecc
Confidence 4578899999999996544222 2345577777643
No 245
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=81.80 E-value=2.2 Score=39.83 Aligned_cols=43 Identities=16% Similarity=0.099 Sum_probs=27.3
Q ss_pred HHHHHHc------CCCEEEEcCCCchhhHHHHHhh---hcCCCeEEEEcchH
Q 012746 46 AIQAVLS------GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLI 88 (457)
Q Consensus 46 ~i~~~~~------~~~~lv~a~TGsGKT~~~~l~~---l~~~~~~lvl~P~~ 88 (457)
.+..++. |.-+++.+|+|+|||...+-.+ ...++.++++..-.
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 4555555 3457889999999996443222 12466787876543
No 246
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=81.68 E-value=3.2 Score=34.92 Aligned_cols=72 Identities=19% Similarity=0.143 Sum_probs=49.3
Q ss_pred CCccEEEEeCCcccHHHHHHHHHhC--CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEecc-----ccc-cCCCCCcc
Q 012746 257 GDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGM-GIDRKDVR 328 (457)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~-Gldip~v~ 328 (457)
.+.+++|.++++.-+.++++.+++. ++.+..++|+.+.......+. ...+|+|+|.- +.. .+++.+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 4567999999999999999999876 467888898876554433222 25789999952 222 34555666
Q ss_pred EEEE
Q 012746 329 LVCH 332 (457)
Q Consensus 329 ~Vi~ 332 (457)
+||.
T Consensus 147 ~iVi 150 (207)
T 2gxq_A 147 VAVL 150 (207)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6554
No 247
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=81.42 E-value=2.5 Score=36.38 Aligned_cols=72 Identities=13% Similarity=0.117 Sum_probs=45.5
Q ss_pred CCccEEEEeCCcccHHHHHHHHHhC---CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEecc-----c-cccCCCCCc
Q 012746 257 GDTCAIVYCLERTTCDELSAYLSAG---GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----F-GMGIDRKDV 327 (457)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~---g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~-~~Gldip~v 327 (457)
.+.++||.+++++-+.++++.+++. ++.+..++|+.+...+... +. ...+|+|+|.- + ...+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4567999999999999999988874 6788888888765543322 22 34789999952 1 123445556
Q ss_pred cEEEE
Q 012746 328 RLVCH 332 (457)
Q Consensus 328 ~~Vi~ 332 (457)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 65554
No 248
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=80.73 E-value=22 Score=32.58 Aligned_cols=17 Identities=18% Similarity=0.112 Sum_probs=13.7
Q ss_pred CCCEEEEcCCCchhhHH
Q 012746 53 GRDCFCLMPTGGGKSMC 69 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~ 69 (457)
|.-+.+.+|+|+|||..
T Consensus 129 g~vi~lvG~nGaGKTTl 145 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTT 145 (328)
T ss_dssp SEEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34577899999999964
No 249
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=80.54 E-value=2.1 Score=35.52 Aligned_cols=53 Identities=9% Similarity=-0.058 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHcC--CCEEEEcCCCchhhHHH---HHhh-hcCCCeEEEEcchHHHHHH
Q 012746 41 DKQLDAIQAVLSG--RDCFCLMPTGGGKSMCY---QIPA-LAKPGIVLVVSPLIALMEN 93 (457)
Q Consensus 41 ~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~---~l~~-l~~~~~~lvl~P~~~L~~q 93 (457)
+-|..++..++.. +-.++.++-|++|+... ++.+ -+.+..+.+++|+..-...
T Consensus 37 ~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~~~ 95 (189)
T 2l8b_A 37 AGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMN 95 (189)
T ss_dssp HHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHHHHH
T ss_pred ccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHHHHH
Confidence 5688888888643 34677889999999763 2323 2348899999999775543
No 250
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=80.45 E-value=1 Score=40.14 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=16.7
Q ss_pred cCCCEEEEcCCCchhhHHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~ 71 (457)
.+.++++.+|+|+|||..+-
T Consensus 28 ~~~~vll~G~~GtGKt~la~ 47 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIAS 47 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHH
T ss_pred CCCCEEEECCCCCcHHHHHH
Confidence 45789999999999997653
No 251
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=80.43 E-value=5.9 Score=35.01 Aligned_cols=72 Identities=15% Similarity=0.097 Sum_probs=50.3
Q ss_pred CCccEEEEeCCcccHHHHHHHHHhC----CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEec-----ccc--ccCCCC
Q 012746 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFG--MGIDRK 325 (457)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~--~Gldip 325 (457)
.+.++||.+++++-+.++++.+++. +..+..++|+......... +..| .+|+|+|. .+. .++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 4567999999999999998888763 5677888888876554332 3334 78999994 121 235666
Q ss_pred CccEEEE
Q 012746 326 DVRLVCH 332 (457)
Q Consensus 326 ~v~~Vi~ 332 (457)
++++||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 6766664
No 252
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=80.39 E-value=1.3 Score=36.96 Aligned_cols=36 Identities=22% Similarity=0.096 Sum_probs=25.5
Q ss_pred CCCEEEEcCCCchhhHHHHHhh---hcCCCeEEEEcchH
Q 012746 53 GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLI 88 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~l~~---l~~~~~~lvl~P~~ 88 (457)
|+-.++.+|+|+|||...+-.+ ..++.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 4557789999999997654222 23567888888874
No 253
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=78.53 E-value=1.4 Score=41.13 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=18.4
Q ss_pred HHHHHcCCC--EEEEcCCCchhhHHHH
Q 012746 47 IQAVLSGRD--CFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 47 i~~~~~~~~--~lv~a~TGsGKT~~~~ 71 (457)
+..+++|.| ++.-+.||||||.+..
T Consensus 97 v~~~l~G~N~tifAYGQTGSGKTyTM~ 123 (359)
T 3nwn_A 97 VSQALDGYNGTIMCYGQTGAGKTYTMM 123 (359)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHhCCCCEEEEEeCCCCCCccEEeC
Confidence 344567876 5566799999998754
No 254
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=78.48 E-value=23 Score=36.13 Aligned_cols=82 Identities=29% Similarity=0.239 Sum_probs=64.2
Q ss_pred CCCeEEEEcchHHHHHHHHHHHHHcCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhc
Q 012746 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR 156 (457)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~ 156 (457)
.+.++||.++++.-+....+.+...|+.+..+++......+.........+. .+++++|..+ ..| .+.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~--~~VLVaT~~l--~~G--------lDi 511 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGK--YDVLVGINLL--REG--------LDI 511 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTS--CSEEEESCCC--STT--------CCC
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCC--eEEEEecchh--hCC--------ccc
Confidence 4779999999999999999999999999988898888888877777776665 7788877532 222 234
Q ss_pred CCccEEEEeccccc
Q 012746 157 GLLNLVAIDEAHCI 170 (457)
Q Consensus 157 ~~l~~lViDEah~~ 170 (457)
..+++||+-|++..
T Consensus 512 p~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 512 PEVSLVAILDADKE 525 (661)
T ss_dssp TTEEEEEETTTTCC
T ss_pred CCCCEEEEeCcccc
Confidence 45788999888764
No 255
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=78.38 E-value=1.4 Score=40.25 Aligned_cols=17 Identities=24% Similarity=0.085 Sum_probs=13.7
Q ss_pred CEEEEcCCCchhhHHHH
Q 012746 55 DCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~ 71 (457)
-+++.+|||+|||..+.
T Consensus 5 ~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCcCCHHHHHH
Confidence 46789999999997653
No 256
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=78.28 E-value=1.6 Score=41.74 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHc--CCCEEEEcCCCchhhHH
Q 012746 39 FRDKQLDAIQAVLS--GRDCFCLMPTGGGKSMC 69 (457)
Q Consensus 39 ~~~~Q~~~i~~~~~--~~~~lv~a~TGsGKT~~ 69 (457)
+.+.+..++..++. +.-+++.+|||||||..
T Consensus 151 ~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 151 MTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp CCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 34556666666553 34578999999999954
No 257
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=77.81 E-value=1.1 Score=37.22 Aligned_cols=19 Identities=16% Similarity=0.104 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~ 70 (457)
.|+-+.+.+|+|+|||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4566889999999999654
No 258
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=77.79 E-value=1.4 Score=40.12 Aligned_cols=15 Identities=33% Similarity=0.481 Sum_probs=12.9
Q ss_pred EEEEcCCCchhhHHH
Q 012746 56 CFCLMPTGGGKSMCY 70 (457)
Q Consensus 56 ~lv~a~TGsGKT~~~ 70 (457)
+++.+|||+|||..+
T Consensus 13 i~i~GptgsGKt~la 27 (316)
T 3foz_A 13 IFLMGPTASGKTALA 27 (316)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCccCHHHHH
Confidence 678999999999765
No 259
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=77.54 E-value=1.9 Score=36.98 Aligned_cols=71 Identities=14% Similarity=0.071 Sum_probs=42.9
Q ss_pred CCccEEEEeCCcccHHHHHHHHHhC----CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccc------cccCCCCC
Q 012746 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------GMGIDRKD 326 (457)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~------~~Gldip~ 326 (457)
.+.++||.++++.-+.++++.+++. +..+..++|+.+..++... +. ..+|+|+|.-. ...+++.+
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 4568999999999999888888753 6778889998765443322 22 37899998521 22344555
Q ss_pred ccEEEE
Q 012746 327 VRLVCH 332 (457)
Q Consensus 327 v~~Vi~ 332 (457)
+++||.
T Consensus 156 ~~~iVi 161 (224)
T 1qde_A 156 IKMFIL 161 (224)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 666554
No 260
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=77.25 E-value=2.2 Score=38.02 Aligned_cols=47 Identities=13% Similarity=0.179 Sum_probs=32.4
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHH-HHHHHHcCC-----CEEEEcCCCchhhHHHH
Q 012746 21 HEKEALVKLLRWHFGHAQFRDKQLD-AIQAVLSGR-----DCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 21 ~l~~~~~~~l~~~~g~~~~~~~Q~~-~i~~~~~~~-----~~lv~a~TGsGKT~~~~ 71 (457)
+--+.+.+-|+-. |++ |.+.. ++..+++++ .+++.+|+|+|||+.+.
T Consensus 70 ~~~n~i~~~l~~q-g~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 70 ISSNRIYKILELN-GYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp GGGCHHHHHHHHT-TCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred CchHHHHHHHHHc-CCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 3455677777653 654 66654 456666653 48899999999998663
No 261
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=77.05 E-value=1.8 Score=39.81 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=18.1
Q ss_pred HHHHcCCC--EEEEcCCCchhhHHHH
Q 012746 48 QAVLSGRD--CFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 48 ~~~~~~~~--~lv~a~TGsGKT~~~~ 71 (457)
..+++|.| ++..++||||||.+..
T Consensus 71 ~~~l~G~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 71 KDVLEGYNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHhCCCeEEEEEECCCCCCCceEec
Confidence 34567876 5667799999998764
No 262
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=77.01 E-value=29 Score=31.71 Aligned_cols=76 Identities=17% Similarity=0.101 Sum_probs=58.0
Q ss_pred CCCeEEEEcchHHHHHHHHHHHHHcCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhc
Q 012746 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR 156 (457)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~ 156 (457)
.+.+++|+++++.-+....+.++..+.....+++......+.........+. .+++++|.. +..-.+.
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~vlv~T~~----------~~~Gid~ 304 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKK--IRILIATDV----------MSRGIDV 304 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTS--SSEEEECTT----------HHHHCCC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCC--CeEEEECCh----------hhcCCCc
Confidence 3678999999999999999999999999999999988888887777777665 667776642 1223344
Q ss_pred CCccEEEE
Q 012746 157 GLLNLVAI 164 (457)
Q Consensus 157 ~~l~~lVi 164 (457)
..+++||.
T Consensus 305 ~~~~~Vi~ 312 (367)
T 1hv8_A 305 NDLNCVIN 312 (367)
T ss_dssp SCCSEEEE
T ss_pred ccCCEEEE
Confidence 45677765
No 263
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=76.85 E-value=4.7 Score=35.28 Aligned_cols=71 Identities=8% Similarity=0.016 Sum_probs=49.4
Q ss_pred CccEEEEeCCcccHHHHHHHHHhC----CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEecc-----ccc-cCCCCCc
Q 012746 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGM-GIDRKDV 327 (457)
Q Consensus 258 ~~~~iIf~~s~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~-Gldip~v 327 (457)
+.++||.+++++-+.++++.+++. ++.+..++|+.+....... + ....+|+|+|.- +.. .+++.++
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIRE---V-QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHH---H-SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---h-CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 457999999999999988887653 5677888888765543322 2 346789999962 112 3566677
Q ss_pred cEEEE
Q 012746 328 RLVCH 332 (457)
Q Consensus 328 ~~Vi~ 332 (457)
+++|.
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 77664
No 264
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=76.62 E-value=1.5 Score=37.11 Aligned_cols=20 Identities=20% Similarity=0.085 Sum_probs=16.9
Q ss_pred cCCCEEEEcCCCchhhHHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~ 71 (457)
.++.+++.+++|+|||...-
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 56789999999999997654
No 265
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=76.55 E-value=1.3 Score=41.55 Aligned_cols=21 Identities=29% Similarity=0.208 Sum_probs=17.3
Q ss_pred HHcCCCEEEEcCCCchhhHHH
Q 012746 50 VLSGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 50 ~~~~~~~lv~a~TGsGKT~~~ 70 (457)
+..|..+++.+|||+|||...
T Consensus 172 i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHH
T ss_pred HhcCCEEEEECCCCCCHHHHH
Confidence 346889999999999999643
No 266
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=76.54 E-value=10 Score=34.28 Aligned_cols=61 Identities=20% Similarity=0.269 Sum_probs=52.3
Q ss_pred CCCeEEEEcchHHHHHHHHHHHHHcCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCC
Q 012746 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139 (457)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~ 139 (457)
.++++||.++++.-+....+.+...+.....+++......+.........+. .+++++|..
T Consensus 27 ~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~--~~vLVaT~v 87 (300)
T 3i32_A 27 SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGE--VRVLVATDV 87 (300)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTS--CCEEEECST
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCC--ceEEEEech
Confidence 3789999999999999999999999999999999988888887777777765 778888854
No 267
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=76.09 E-value=1.5 Score=39.98 Aligned_cols=34 Identities=24% Similarity=0.221 Sum_probs=22.8
Q ss_pred cCCCEEEEcCCCchhhHHH-HHhhhcCCCeEEEEcc
Q 012746 52 SGRDCFCLMPTGGGKSMCY-QIPALAKPGIVLVVSP 86 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~-~l~~l~~~~~~lvl~P 86 (457)
.|+-+.+++|+|+|||... ++.-+. .+.++..+|
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I~~~v~ 159 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL-GGSVLSFAN 159 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH-TCEEECGGG
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc-CceEEEEec
Confidence 5677889999999999543 233233 666655444
No 268
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=76.02 E-value=1.8 Score=40.16 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=17.3
Q ss_pred HHHHcCCC--EEEEcCCCchhhHHH
Q 012746 48 QAVLSGRD--CFCLMPTGGGKSMCY 70 (457)
Q Consensus 48 ~~~~~~~~--~lv~a~TGsGKT~~~ 70 (457)
..+++|.| ++..++||||||.+.
T Consensus 88 ~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 88 DKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hHhhCCCceEEEEecCCCCCCCeEE
Confidence 34457876 566779999999875
No 269
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=75.95 E-value=1.2 Score=37.84 Aligned_cols=18 Identities=28% Similarity=0.224 Sum_probs=14.7
Q ss_pred CCCEEEEcCCCchhhHHH
Q 012746 53 GRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~ 70 (457)
++-+++.+|||+|||..+
T Consensus 34 g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TEEEEEECCCTTTTHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 456889999999999544
No 270
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=75.48 E-value=1.4 Score=37.28 Aligned_cols=19 Identities=32% Similarity=0.385 Sum_probs=14.7
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~ 70 (457)
.|+-+.+++|+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677899999999999643
No 271
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=75.44 E-value=1.7 Score=36.23 Aligned_cols=34 Identities=18% Similarity=0.012 Sum_probs=23.8
Q ss_pred EEEEcCCCchhhHHHHHhhhcCCCeEEEEcchHHH
Q 012746 56 CFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIAL 90 (457)
Q Consensus 56 ~lv~a~TGsGKT~~~~l~~l~~~~~~lvl~P~~~L 90 (457)
+++.+++|||||.-+.-.+.. +..++++......
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~~ 35 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQIL 35 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC-
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCCC
Confidence 688999999999655433334 6678888875443
No 272
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=75.38 E-value=3.9 Score=46.21 Aligned_cols=90 Identities=16% Similarity=0.177 Sum_probs=56.2
Q ss_pred CCCEEEEcCCCchhhHHHHHh---hhcCCCeEEEEcchHHHHHHHHHHHHHcCCceeEecCCCcHHHHHHHHHHhhcCCC
Q 012746 53 GRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKP 129 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~l~---~l~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (457)
|+-+.+.+|.|+|||..++-. +-.+++.++++.+-.+|-... ++++|++...
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~---~~~~Gv~~~~---------------------- 1485 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDIDN---------------------- 1485 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH---HHHTTCCGGG----------------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHH---HHHcCCCHHH----------------------
Confidence 456889999999999765432 234588999999877765433 6667765432
Q ss_pred cccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccc
Q 012746 130 SLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (457)
Q Consensus 130 ~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~ 172 (457)
+++.-|+.- ...+...........+++||||.+-.+..
T Consensus 1486 ---l~~~~p~~~--e~~l~~~~~~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1486 ---LLCSQPDTG--EQALEICDALARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp ---CEEECCSSH--HHHHHHHHHHHHHTCCSEEEESCSTTCCC
T ss_pred ---eEEeCCCcH--HHHHHHHHHHHHcCCCCEEEEccHHhCCc
Confidence 222222211 11222234444455689999999988754
No 273
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=75.32 E-value=2.1 Score=40.04 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=17.8
Q ss_pred HHHHcCCC--EEEEcCCCchhhHHHH
Q 012746 48 QAVLSGRD--CFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 48 ~~~~~~~~--~lv~a~TGsGKT~~~~ 71 (457)
..+++|.| ++.-++||||||.+..
T Consensus 78 ~~~l~G~n~tifAYGqTGSGKTyTm~ 103 (365)
T 2y65_A 78 TDVLAGYNGTIFAYGQTSSGKTHTME 103 (365)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHhCCCceEEEeecCCCCCCceEEe
Confidence 34557876 5567799999998753
No 274
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=75.31 E-value=36 Score=33.30 Aligned_cols=32 Identities=13% Similarity=0.099 Sum_probs=20.2
Q ss_pred CEEEEcCCCchhhHHHH-Hh-hh-cCCCeEEEEcc
Q 012746 55 DCFCLMPTGGGKSMCYQ-IP-AL-AKPGIVLVVSP 86 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~-l~-~l-~~~~~~lvl~P 86 (457)
.+++++++|+|||..+. ++ .+ ..+.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 47788999999996543 22 22 23566666653
No 275
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=75.30 E-value=21 Score=41.24 Aligned_cols=44 Identities=14% Similarity=0.052 Sum_probs=27.9
Q ss_pred HHHHHHHc------CCCEEEEcCCCchhhHHHHHhh---hcCCCeEEEEcchH
Q 012746 45 DAIQAVLS------GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLI 88 (457)
Q Consensus 45 ~~i~~~~~------~~~~lv~a~TGsGKT~~~~l~~---l~~~~~~lvl~P~~ 88 (457)
..+..++. |.-+++.+|+|+|||..++-.+ ...+..++++.--.
T Consensus 369 ~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~ 421 (2050)
T 3cmu_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 421 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred HHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCC
Confidence 34555554 4568889999999996544222 23356777776543
No 276
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=75.29 E-value=2.2 Score=39.75 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=24.9
Q ss_pred cCCC---CCCHHHHHHH--------HHHHcCCC--EEEEcCCCchhhHHHH
Q 012746 34 FGHA---QFRDKQLDAI--------QAVLSGRD--CFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 34 ~g~~---~~~~~Q~~~i--------~~~~~~~~--~lv~a~TGsGKT~~~~ 71 (457)
|.|. .+..-|.+++ ..+++|.| ++..++||||||.+..
T Consensus 58 f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 108 (350)
T 2vvg_A 58 FTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMG 108 (350)
T ss_dssp EECSEEECTTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred eeCCEEECCCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEee
Confidence 5555 2344565555 34567876 5567799999998753
No 277
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=75.26 E-value=13 Score=35.00 Aligned_cols=60 Identities=18% Similarity=0.158 Sum_probs=50.3
Q ss_pred CCCeEEEEcchHHHHHHHHHHHHHcCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECC
Q 012746 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (457)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~ 138 (457)
.++++||+++++.-+....+.+...+..+..+++......+.........+. .+++++|.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vlvaT~ 334 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK--SPILVATA 334 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTS--SCEEEECH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCC--CCEEEECC
Confidence 4678999999999999999999999999999999998888887777777665 56666653
No 278
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=75.00 E-value=2.2 Score=39.63 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=17.2
Q ss_pred HHHHcCCC--EEEEcCCCchhhHHH
Q 012746 48 QAVLSGRD--CFCLMPTGGGKSMCY 70 (457)
Q Consensus 48 ~~~~~~~~--~lv~a~TGsGKT~~~ 70 (457)
..+++|.| ++..++||||||.+.
T Consensus 77 ~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 77 EAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCeeEEEecccCCCceEee
Confidence 34457876 556779999999875
No 279
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=74.98 E-value=1.7 Score=36.09 Aligned_cols=20 Identities=15% Similarity=0.132 Sum_probs=16.3
Q ss_pred CCCEEEEcCCCchhhHHHHH
Q 012746 53 GRDCFCLMPTGGGKSMCYQI 72 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~l 72 (457)
++.+++.+++|+|||.....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 45789999999999976543
No 280
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=74.88 E-value=2.3 Score=39.28 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=19.7
Q ss_pred HHHHHHcCCC--EEEEcCCCchhhHHHH
Q 012746 46 AIQAVLSGRD--CFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 46 ~i~~~~~~~~--~lv~a~TGsGKT~~~~ 71 (457)
.+..+++|.| ++..++||||||.+..
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTME 99 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEEe
Confidence 4556678877 5567799999998753
No 281
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=74.83 E-value=2.3 Score=31.42 Aligned_cols=37 Identities=19% Similarity=0.413 Sum_probs=32.5
Q ss_pred CCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCC
Q 012746 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293 (457)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~ 293 (457)
++.++++||.+-..+...+..|...|+++..+.|++.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 4567999999988999999999999999999988864
No 282
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=74.82 E-value=2.1 Score=40.20 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=17.7
Q ss_pred HHHHcCCC--EEEEcCCCchhhHHHH
Q 012746 48 QAVLSGRD--CFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 48 ~~~~~~~~--~lv~a~TGsGKT~~~~ 71 (457)
..+++|.| ++..++||||||.+..
T Consensus 95 ~~~l~G~n~tifAYGqTGSGKTyTM~ 120 (372)
T 3b6u_A 95 DSVLQGFNGTIFAYGQTGTGKTYTME 120 (372)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHhCCCeeeEEeecCCCCCCCEeEe
Confidence 34567876 5566799999998753
No 283
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=74.49 E-value=1.2 Score=41.66 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=15.4
Q ss_pred CCEEEEcCCCchhhHHHH
Q 012746 54 RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~ 71 (457)
+.+++.||+|+|||..+.
T Consensus 71 ~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CEEEEEESTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 479999999999997654
No 284
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=74.43 E-value=2.2 Score=39.89 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=18.2
Q ss_pred HHHHHcCCC--EEEEcCCCchhhHHHH
Q 012746 47 IQAVLSGRD--CFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 47 i~~~~~~~~--~lv~a~TGsGKT~~~~ 71 (457)
+..+++|.| ++..++||+|||.+..
T Consensus 96 v~~~l~G~N~tIfAYGqTGSGKTyTM~ 122 (358)
T 2nr8_A 96 VSQALDGYNGTIMCYGQTGAGKTYTMM 122 (358)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHhCCCceEEEEECCCCCCCceEec
Confidence 344567877 4556799999998753
No 285
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=74.40 E-value=2.1 Score=39.94 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=17.3
Q ss_pred HHHcCCC--EEEEcCCCchhhHHHH
Q 012746 49 AVLSGRD--CFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 49 ~~~~~~~--~lv~a~TGsGKT~~~~ 71 (457)
.+++|.| ++..++||+|||.+..
T Consensus 75 ~~l~G~n~tifAYGqTGSGKTyTm~ 99 (355)
T 1goj_A 75 DILNGYNGTVFAYGQTGAGKSYTMM 99 (355)
T ss_dssp HHTTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHhCCCcceEEEECCCCCCcceEee
Confidence 3457876 5667799999998754
No 286
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=74.37 E-value=1.4 Score=39.18 Aligned_cols=18 Identities=33% Similarity=0.292 Sum_probs=15.3
Q ss_pred cCCCEEEEcCCCchhhHH
Q 012746 52 SGRDCFCLMPTGGGKSMC 69 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~ 69 (457)
.|.-+.+.+|||+|||..
T Consensus 24 ~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp SSEEEEEECSTTCSHHHH
T ss_pred CCCEEEEECCCCccHHHH
Confidence 566788999999999954
No 287
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=74.35 E-value=1.9 Score=39.34 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=16.6
Q ss_pred cCCCEEEEcCCCchhhHHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~ 71 (457)
.+.++++.+|+|+|||..+-
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr 43 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVAR 43 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHH
T ss_pred CCCcEEEECCCCchHHHHHH
Confidence 34689999999999997653
No 288
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=74.33 E-value=2.3 Score=39.83 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=18.3
Q ss_pred HHHHHcCCC--EEEEcCCCchhhHHHH
Q 012746 47 IQAVLSGRD--CFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 47 i~~~~~~~~--~lv~a~TGsGKT~~~~ 71 (457)
+..+++|.| ++..++||||||.+..
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyTm~ 108 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYTMM 108 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceEee
Confidence 344568876 5567799999998753
No 289
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=74.31 E-value=2.2 Score=39.77 Aligned_cols=25 Identities=32% Similarity=0.495 Sum_probs=18.5
Q ss_pred HHHHHcCCC--EEEEcCCCchhhHHHH
Q 012746 47 IQAVLSGRD--CFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 47 i~~~~~~~~--~lv~a~TGsGKT~~~~ 71 (457)
+..+++|.| ++.-++||||||.+..
T Consensus 85 v~~~l~G~n~tifAYGqTGSGKTyTm~ 111 (354)
T 3gbj_A 85 LQNAFDGYNACIFAYGQTGSGKSYTMM 111 (354)
T ss_dssp HHHHHTTCCEEEEEEECTTSSHHHHHT
T ss_pred HHHHhCCceeEEEeeCCCCCCCceEEe
Confidence 345568877 4566799999998753
No 290
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=74.26 E-value=44 Score=31.91 Aligned_cols=39 Identities=26% Similarity=0.156 Sum_probs=23.1
Q ss_pred CEEEEcCCCchhhHHHH-Hh-hh-cC-CCeEEEEc--chHHHHHH
Q 012746 55 DCFCLMPTGGGKSMCYQ-IP-AL-AK-PGIVLVVS--PLIALMEN 93 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~-l~-~l-~~-~~~~lvl~--P~~~L~~q 93 (457)
.+++.+++|+|||.+.. ++ .+ .+ +.+++++. |.+..+.+
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ 146 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIK 146 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHH
Confidence 46678999999996543 22 22 23 56666654 44444433
No 291
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=74.19 E-value=2.3 Score=31.90 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=33.2
Q ss_pred CCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCH
Q 012746 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLND 294 (457)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~ 294 (457)
++.++++||.+-..+...+..|++.|+++..+.||+..
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~~ 91 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQS 91 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHHH
Confidence 45679999999888999999999999999999998753
No 292
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=74.18 E-value=2.2 Score=39.68 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=17.8
Q ss_pred HHHHcCCC--EEEEcCCCchhhHHHH
Q 012746 48 QAVLSGRD--CFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 48 ~~~~~~~~--~lv~a~TGsGKT~~~~ 71 (457)
..+++|.| ++..++||||||.+..
T Consensus 71 ~~~l~G~n~tifAYGqTGSGKTyTM~ 96 (349)
T 1t5c_A 71 DSAIQGYNGTIFAYGQTASGKTYTMM 96 (349)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHcCCccceeeecCCCCCCCeEEe
Confidence 44567876 5567799999998753
No 293
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=74.15 E-value=21 Score=25.36 Aligned_cols=107 Identities=15% Similarity=0.111 Sum_probs=71.6
Q ss_pred EEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCCceEEEEEEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHH
Q 012746 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELS 275 (457)
Q Consensus 196 ~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~ 275 (457)
++.+-.|-..+....+.... .+..|.+......++.-..+..+-...+-.+++|..|.+.-...+-
T Consensus 3 ililintnndelikkikkev--------------enqgyqvrdvndsdelkkemkklaeeknfekiliisndkqllkeml 68 (134)
T 2lci_A 3 ILILINTNNDELIKKIKKEV--------------ENQGYQVRDVNDSDELKKEMKKLAEEKNFEKILIISNDKQLLKEML 68 (134)
T ss_dssp CEEEEECSCHHHHHHHHHHT--------------TTTTCEEEEECSHHHHHHHHHHHHHCCSCCCEEEEESCHHHHHHHH
T ss_pred EEEEEcCCcHHHHHHHHHHH--------------HccCeeeeecCchHHHHHHHHHHHhhcCcceEEEEcCcHHHHHHHH
Confidence 44555666666655554433 2334555555444455555666666677889999999998888888
Q ss_pred HHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEec
Q 012746 276 AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (457)
Q Consensus 276 ~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~ 316 (457)
+.+.+.|+++..+--+.+..+-.+.-....+..+.|--.|+
T Consensus 69 elisklgykvflllqdqdeneleefkrkiesqgyevrkvtd 109 (134)
T 2lci_A 69 ELISKLGYKVFLLLQDQDENELEEFKRKIESQGYEVRKVTD 109 (134)
T ss_dssp HHHHHHTCCEEEEEECSCHHHHHHHHHHHHTTTCEEEEECC
T ss_pred HHHHHhCceeEEEeecCchhHHHHHHHHHHhCCeeeeecCC
Confidence 88889999999998888887755555555555555555554
No 294
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=74.06 E-value=2.2 Score=39.82 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=17.6
Q ss_pred HHHHcCCC--EEEEcCCCchhhHHHH
Q 012746 48 QAVLSGRD--CFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 48 ~~~~~~~~--~lv~a~TGsGKT~~~~ 71 (457)
..+++|.| ++.-++||||||.+..
T Consensus 99 ~~~l~G~n~tifAYGqTGSGKTyTm~ 124 (355)
T 3lre_A 99 RSFLNGYNCTVLAYGATGAGKTHTML 124 (355)
T ss_dssp HHHTTTCCEEEEEECCTTSSHHHHHT
T ss_pred HHHhCCCceEEEEeCCCCCCceeeec
Confidence 34457876 5567799999998753
No 295
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=74.03 E-value=1.5 Score=35.99 Aligned_cols=19 Identities=21% Similarity=0.022 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 012746 53 GRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~ 71 (457)
+.-+++.+++|+|||.+.-
T Consensus 3 ~~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3458899999999997653
No 296
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=73.93 E-value=2.5 Score=40.15 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=19.4
Q ss_pred HHHHHHcCCC--EEEEcCCCchhhHHHH
Q 012746 46 AIQAVLSGRD--CFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 46 ~i~~~~~~~~--~lv~a~TGsGKT~~~~ 71 (457)
.+..+++|.| ++..++||||||.+..
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 4455678877 5566799999998764
No 297
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=73.87 E-value=1.9 Score=36.76 Aligned_cols=20 Identities=25% Similarity=0.235 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCchhhHHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~ 71 (457)
.|.-+++.||+|+|||...-
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 35567889999999996543
No 298
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=73.74 E-value=1.5 Score=37.33 Aligned_cols=45 Identities=27% Similarity=0.343 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC----CCEEEEcCCCchhhHHH
Q 012746 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSG----RDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 23 ~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~----~~~lv~a~TGsGKT~~~ 70 (457)
-..+.+-|+-. |++ +-.. ...+..++++ +.+++.+|+|+|||..+
T Consensus 27 w~~I~~~l~yq-~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 27 WRPIVQFLRYQ-QIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp SHHHHHHHHHT-TCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHHHc-CcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 34555555532 322 3333 4455555554 35889999999999654
No 299
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=73.52 E-value=2.3 Score=40.36 Aligned_cols=24 Identities=33% Similarity=0.664 Sum_probs=17.9
Q ss_pred HHHHcCCC--EEEEcCCCchhhHHHH
Q 012746 48 QAVLSGRD--CFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 48 ~~~~~~~~--~lv~a~TGsGKT~~~~ 71 (457)
..+++|.| ++..+.||||||.+..
T Consensus 148 ~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 148 QTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHhcCCceeEEeecCCCCCCCeEee
Confidence 44567876 5566799999998754
No 300
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=73.32 E-value=1.6 Score=35.63 Aligned_cols=18 Identities=22% Similarity=0.152 Sum_probs=14.3
Q ss_pred CEEEEcCCCchhhHHHHH
Q 012746 55 DCFCLMPTGGGKSMCYQI 72 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~l 72 (457)
-+++.||+|+|||...-.
T Consensus 3 ~I~l~G~~GsGKsT~a~~ 20 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKL 20 (179)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367899999999976543
No 301
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=73.19 E-value=2.4 Score=36.93 Aligned_cols=34 Identities=18% Similarity=0.103 Sum_probs=21.9
Q ss_pred cCCCEEEEcCCCchhhHHHH-Hh--hh-cCCCeEEEEc
Q 012746 52 SGRDCFCLMPTGGGKSMCYQ-IP--AL-AKPGIVLVVS 85 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~-l~--~l-~~~~~~lvl~ 85 (457)
.|.-+.+.+|+|+|||.... +. .+ ..+..++++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 56778899999999996543 22 22 3444455544
No 302
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=73.18 E-value=12 Score=27.36 Aligned_cols=50 Identities=12% Similarity=0.239 Sum_probs=40.0
Q ss_pred EEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCce
Q 012746 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (457)
Q Consensus 261 ~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 310 (457)
.++|.+..+-...+...++..|..+..++++.+.+.|.+-++.|.....+
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvd 54 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVD 54 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCc
Confidence 35666666777788888888999999999999999999989999754443
No 303
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=73.18 E-value=2.2 Score=39.85 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=17.8
Q ss_pred HHHHcCCC--EEEEcCCCchhhHHHH
Q 012746 48 QAVLSGRD--CFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 48 ~~~~~~~~--~lv~a~TGsGKT~~~~ 71 (457)
..+++|.| ++..++||||||.+..
T Consensus 82 ~~~l~G~n~tifAYGqTGSGKTyTM~ 107 (359)
T 1x88_A 82 DEVIMGYNCTIFAYGQTGTGKTFTME 107 (359)
T ss_dssp HHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred HHHhCCCceEEEEeCCCCCCCceEEe
Confidence 34567876 5566799999998764
No 304
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=73.12 E-value=2.3 Score=31.23 Aligned_cols=37 Identities=14% Similarity=0.406 Sum_probs=32.4
Q ss_pred CCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCC
Q 012746 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293 (457)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~ 293 (457)
++.++++||.+-..+...+..|++.|+++..+.|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 4567999999988899999999999999999988864
No 305
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=72.87 E-value=2.5 Score=39.88 Aligned_cols=24 Identities=33% Similarity=0.664 Sum_probs=17.9
Q ss_pred HHHHcCCC--EEEEcCCCchhhHHHH
Q 012746 48 QAVLSGRD--CFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 48 ~~~~~~~~--~lv~a~TGsGKT~~~~ 71 (457)
..+++|.| ++..+.||||||.+..
T Consensus 128 ~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 128 QTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHHhcCCceEEEEecCCCCCCCeEec
Confidence 44567876 5667799999998753
No 306
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=72.85 E-value=2.4 Score=39.85 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=17.3
Q ss_pred HHHcCCC--EEEEcCCCchhhHHHH
Q 012746 49 AVLSGRD--CFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 49 ~~~~~~~--~lv~a~TGsGKT~~~~ 71 (457)
.+++|.| ++..+.||||||.+..
T Consensus 95 ~~l~G~n~tifAYGqTGSGKTyTm~ 119 (373)
T 2wbe_C 95 EVLNGYNCTVFAYGQTGTGKTHTMV 119 (373)
T ss_dssp HHHHTCCEEEEEECSTTSSHHHHHT
T ss_pred HHhCCceEEEEeecCCCCCcceecc
Confidence 3557876 5567799999998754
No 307
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=72.83 E-value=2.1 Score=39.59 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=16.5
Q ss_pred HcCCCEEEEcCCCchhhHH
Q 012746 51 LSGRDCFCLMPTGGGKSMC 69 (457)
Q Consensus 51 ~~~~~~lv~a~TGsGKT~~ 69 (457)
..|+.+.+.+|||+|||..
T Consensus 169 ~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHTCCEEEEESTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3688999999999999964
No 308
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=72.74 E-value=2.4 Score=40.44 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=19.7
Q ss_pred HHHHHHcCCC--EEEEcCCCchhhHHHH
Q 012746 46 AIQAVLSGRD--CFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 46 ~i~~~~~~~~--~lv~a~TGsGKT~~~~ 71 (457)
.+..+++|.| ++..++||||||.+..
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 157 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTMD 157 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEec
Confidence 4566678877 5566799999998753
No 309
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=72.56 E-value=2.3 Score=39.05 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=13.8
Q ss_pred CEEEEcCCCchhhHHH
Q 012746 55 DCFCLMPTGGGKSMCY 70 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~ 70 (457)
.+++.+|||+|||..+
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999765
No 310
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=72.49 E-value=1.8 Score=36.07 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=16.4
Q ss_pred cCCCEEEEcCCCchhhHHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~ 71 (457)
++..+++.+++|+|||.+.-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35678999999999997654
No 311
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=72.13 E-value=2.2 Score=40.05 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=19.3
Q ss_pred HHHHHHcCCC--EEEEcCCCchhhHHHH
Q 012746 46 AIQAVLSGRD--CFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 46 ~i~~~~~~~~--~lv~a~TGsGKT~~~~ 71 (457)
.+..+++|.| ++..++||||||.+..
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 98 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTIY 98 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEeec
Confidence 4456678876 5556799999998753
No 312
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=72.06 E-value=1.4 Score=36.75 Aligned_cols=20 Identities=25% Similarity=0.214 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCchhhHHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~ 71 (457)
+|.-+++.+|+|+|||...-
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~ 27 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAE 27 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 46678899999999997543
No 313
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=72.03 E-value=2.1 Score=38.95 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=15.1
Q ss_pred CCEEEEcCCCchhhHHHH
Q 012746 54 RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~ 71 (457)
..+++.+|+|+|||..+-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 368999999999997653
No 314
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=71.95 E-value=2.5 Score=34.82 Aligned_cols=20 Identities=15% Similarity=-0.004 Sum_probs=16.6
Q ss_pred cCCCEEEEcCCCchhhHHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~ 71 (457)
.+..+++.+++|+|||....
T Consensus 10 ~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHH
Confidence 45679999999999997654
No 315
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=71.72 E-value=2.1 Score=37.87 Aligned_cols=15 Identities=27% Similarity=0.220 Sum_probs=12.9
Q ss_pred EEEEcCCCchhhHHH
Q 012746 56 CFCLMPTGGGKSMCY 70 (457)
Q Consensus 56 ~lv~a~TGsGKT~~~ 70 (457)
+++.+|+|||||..+
T Consensus 4 i~I~G~~GSGKSTla 18 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCcCHHHHH
Confidence 678999999999755
No 316
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=71.49 E-value=2.1 Score=36.21 Aligned_cols=20 Identities=20% Similarity=0.100 Sum_probs=16.4
Q ss_pred HcCCCEEEEcCCCchhhHHH
Q 012746 51 LSGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 51 ~~~~~~lv~a~TGsGKT~~~ 70 (457)
..|+-+++.+|+|+|||...
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHH
Confidence 35678899999999999654
No 317
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=71.48 E-value=2 Score=36.34 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=15.8
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~ 70 (457)
.|+-+++.+|+|+|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 5677889999999999653
No 318
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=71.44 E-value=3.2 Score=30.85 Aligned_cols=37 Identities=19% Similarity=0.413 Sum_probs=31.8
Q ss_pred CCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCC
Q 012746 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293 (457)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~ 293 (457)
++.++++||.+-..+...+..|.+.|+++..+.||+.
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 4567999999988899999999999999888888763
No 319
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=71.38 E-value=2.9 Score=40.21 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=17.8
Q ss_pred HHHHcCCC--EEEEcCCCchhhHHHH
Q 012746 48 QAVLSGRD--CFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 48 ~~~~~~~~--~lv~a~TGsGKT~~~~ 71 (457)
..+++|.| ++..+.||+|||.+..
T Consensus 130 ~~~l~GyN~tIfAYGQTGSGKTyTM~ 155 (443)
T 2owm_A 130 DHNFEGYHTCIFAYGQTGSGKSYTMM 155 (443)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred HHhhcCCceEEEEeCCCCCCCCEEee
Confidence 33467876 5567799999998764
No 320
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=71.05 E-value=2.1 Score=41.59 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=15.7
Q ss_pred CCEEEEcCCCchhhHHHH
Q 012746 54 RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~ 71 (457)
+++++.+|+|+|||..+.
T Consensus 64 ~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcCCHHHHHH
Confidence 579999999999997663
No 321
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=71.05 E-value=13 Score=34.92 Aligned_cols=59 Identities=15% Similarity=0.178 Sum_probs=51.5
Q ss_pred CCeEEEEcchHHHHHHHHHHHHHcCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECC
Q 012746 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (457)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~ 138 (457)
.+++||+++++.-+....+.+...+.....+++......+.........+. .+++++|.
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vlv~T~ 324 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK--EKVLVTTN 324 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTS--CSEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCC--CcEEEEcC
Confidence 678999999999999999999999999999999999888888888877765 67777775
No 322
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=71.03 E-value=36 Score=34.65 Aligned_cols=82 Identities=23% Similarity=0.191 Sum_probs=63.1
Q ss_pred CCCeEEEEcchHHHHHHHHHHHHHcCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhc
Q 012746 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR 156 (457)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~ 156 (457)
.+.++||.++++.-+....+.+...|+.+..+++......+.........+. .+++++|..+- .| .+.
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~--~~VLvaT~~l~--~G--------lDi 505 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGH--YDCLVGINLLR--EG--------LDI 505 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTS--CSEEEESCCCC--TT--------CCC
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCC--ceEEEccChhh--cC--------ccC
Confidence 4789999999999999999999999999988898888888877777777665 77888774321 12 233
Q ss_pred CCccEEEEeccccc
Q 012746 157 GLLNLVAIDEAHCI 170 (457)
Q Consensus 157 ~~l~~lViDEah~~ 170 (457)
..+++||+=+++..
T Consensus 506 p~v~lVI~~d~d~~ 519 (664)
T 1c4o_A 506 PEVSLVAILDADKE 519 (664)
T ss_dssp TTEEEEEETTTTSC
T ss_pred CCCCEEEEeCCccc
Confidence 44778888777654
No 323
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=70.82 E-value=2.7 Score=34.26 Aligned_cols=19 Identities=37% Similarity=0.534 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 012746 53 GRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~ 71 (457)
+..+.+.+|+|+|||...-
T Consensus 4 ~~~i~l~G~~GsGKSTl~~ 22 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGR 22 (173)
T ss_dssp CCCEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4578999999999997554
No 324
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=70.74 E-value=2.1 Score=36.15 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~ 70 (457)
.|.-+.+.||+|+|||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4566788999999999654
No 325
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=70.49 E-value=1.1 Score=39.75 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCchhhHHH
Q 012746 53 GRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~ 70 (457)
.+.+++.||+|+|||..+
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 356999999999999765
No 326
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=70.43 E-value=3.1 Score=39.36 Aligned_cols=38 Identities=18% Similarity=0.305 Sum_probs=26.9
Q ss_pred cCCCEEEEcCCCchhhHHHHHh---hhcCCCeEEEEcchHH
Q 012746 52 SGRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIA 89 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~l~---~l~~~~~~lvl~P~~~ 89 (457)
.+.++++.+|||+|||...-.. ....+.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcC
Confidence 4568999999999999653321 2234777888877655
No 327
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=70.39 E-value=6 Score=47.00 Aligned_cols=49 Identities=12% Similarity=0.149 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHH-HH---HHHHcCCCEEEEcCCCchhhHHHHH
Q 012746 22 EKEALVKLLRWHFGHAQFRDKQLD-AI---QAVLSGRDCFCLMPTGGGKSMCYQI 72 (457)
Q Consensus 22 l~~~~~~~l~~~~g~~~~~~~Q~~-~i---~~~~~~~~~lv~a~TGsGKT~~~~l 72 (457)
+.+.+.+...+ .|+. +.+.+.. ++ ..+..++.++++||||+|||.++-.
T Consensus 890 l~~~i~~~~~~-~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 890 IVQCLKDAGQR-SGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHH-HTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHH-cCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 55666777766 4766 6666533 33 3334567899999999999987653
No 328
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=70.32 E-value=2.3 Score=40.06 Aligned_cols=33 Identities=30% Similarity=0.468 Sum_probs=23.4
Q ss_pred CCHHHHHHHHH--------HHcCCC--EEEEcCCCchhhHHHH
Q 012746 39 FRDKQLDAIQA--------VLSGRD--CFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 39 ~~~~Q~~~i~~--------~~~~~~--~lv~a~TGsGKT~~~~ 71 (457)
+..-|.+++.. +++|.| ++..++||||||.+..
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM~ 117 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTML 117 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHHT
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEee
Confidence 44567777653 457876 5567799999998753
No 329
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=70.14 E-value=2.4 Score=39.43 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=18.1
Q ss_pred HHHHHcCCC--EEEEcCCCchhhHHHH
Q 012746 47 IQAVLSGRD--CFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 47 i~~~~~~~~--~lv~a~TGsGKT~~~~ 71 (457)
+..+++|.| ++..++||||||.+..
T Consensus 78 v~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 78 VQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 344457876 5567799999998764
No 330
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=69.85 E-value=2.4 Score=36.42 Aligned_cols=19 Identities=21% Similarity=0.111 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~ 70 (457)
.|+-+.+.+|+|+|||...
T Consensus 22 ~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp CCCCEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6778899999999999643
No 331
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=69.73 E-value=2.5 Score=35.82 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=13.5
Q ss_pred EEEEcCCCchhhHHHH
Q 012746 56 CFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 56 ~lv~a~TGsGKT~~~~ 71 (457)
.++.|++|||||..+.
T Consensus 8 ~l~tG~pGsGKT~~a~ 23 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMV 23 (199)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEEeCCCCCHHHHHH
Confidence 5789999999997654
No 332
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=69.44 E-value=2.3 Score=39.49 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=16.7
Q ss_pred HHcCCC--EEEEcCCCchhhHHHH
Q 012746 50 VLSGRD--CFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 50 ~~~~~~--~lv~a~TGsGKT~~~~ 71 (457)
+++|.| ++..++||||||.+..
T Consensus 80 ~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 80 SLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp GGGTCCEEEEEECCTTSSHHHHHH
T ss_pred hcCCceeEEEEECCCCCCCcEecc
Confidence 357776 5567799999998764
No 333
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=69.44 E-value=16 Score=33.90 Aligned_cols=61 Identities=11% Similarity=0.053 Sum_probs=51.7
Q ss_pred CCCeEEEEcchHHHHHHHHHHHHHcCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCC
Q 012746 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139 (457)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~ 139 (457)
..+++||+++++.-+....+.+...+.....+++......+.........+. .+++++|..
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~vlv~T~~ 309 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ--RRILVATNL 309 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTC--CSEEEESCC
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCC--CcEEEECCh
Confidence 4679999999999999999999999999999999988888887777777665 678887743
No 334
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=69.35 E-value=2.2 Score=35.02 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=13.8
Q ss_pred CEEEEcCCCchhhHHHH
Q 012746 55 DCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~ 71 (457)
-+++.|++|||||..+-
T Consensus 4 ~I~i~G~~GsGKST~a~ 20 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAR 20 (181)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEecCCCCCHHHHHH
Confidence 36789999999997553
No 335
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=69.31 E-value=15 Score=34.16 Aligned_cols=79 Identities=15% Similarity=0.154 Sum_probs=60.4
Q ss_pred CCeEEEEcchHHHHHHHHHHHHHcCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcC
Q 012746 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRG 157 (457)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~ 157 (457)
.+++||+++++.-+....+.++..+.....+++......+.........+. .+++++|...- .-.+..
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vlv~T~~~~----------~Gidip 310 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGR--SKVLITTNVLA----------RGIDIP 310 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTS--CCEEEECGGGS----------SSCCCT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCC--CCEEEECChhh----------cCCCcc
Confidence 578999999999999999999999999999999998888888888777765 67777774321 122334
Q ss_pred CccEEEEeccc
Q 012746 158 LLNLVAIDEAH 168 (457)
Q Consensus 158 ~l~~lViDEah 168 (457)
.+++||.-+..
T Consensus 311 ~~~~Vi~~~~p 321 (395)
T 3pey_A 311 TVSMVVNYDLP 321 (395)
T ss_dssp TEEEEEESSCC
T ss_pred cCCEEEEcCCC
Confidence 46777764443
No 336
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=69.18 E-value=2.3 Score=35.89 Aligned_cols=19 Identities=26% Similarity=0.223 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~ 70 (457)
.|.-+.+.||+|+|||...
T Consensus 5 ~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCEEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667889999999999654
No 337
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=69.11 E-value=3 Score=38.62 Aligned_cols=16 Identities=25% Similarity=0.191 Sum_probs=13.5
Q ss_pred CEEEEcCCCchhhHHH
Q 012746 55 DCFCLMPTGGGKSMCY 70 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~ 70 (457)
-+++.||||+|||..+
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 4678999999999755
No 338
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=69.10 E-value=11 Score=36.15 Aligned_cols=72 Identities=17% Similarity=0.137 Sum_probs=53.3
Q ss_pred cCCccEEEEeCCcccHHHHHHHHHhC-CC---ceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccc------cccCCCC
Q 012746 256 NGDTCAIVYCLERTTCDELSAYLSAG-GI---SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------GMGIDRK 325 (457)
Q Consensus 256 ~~~~~~iIf~~s~~~~~~l~~~L~~~-g~---~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~------~~Gldip 325 (457)
..+.++||.++++.-+.+.++.+.+. +. .+..+||+....++..... ..+|+|+|.-. ...++..
T Consensus 50 ~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~ 124 (494)
T 1wp9_A 50 KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLE 124 (494)
T ss_dssp HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTT
T ss_pred cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchh
Confidence 35678999999999999888888875 55 8999999998877654433 36799999521 1235666
Q ss_pred CccEEEE
Q 012746 326 DVRLVCH 332 (457)
Q Consensus 326 ~v~~Vi~ 332 (457)
+.++||.
T Consensus 125 ~~~~vIi 131 (494)
T 1wp9_A 125 DVSLIVF 131 (494)
T ss_dssp SCSEEEE
T ss_pred hceEEEE
Confidence 7777774
No 339
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=68.79 E-value=2.5 Score=35.13 Aligned_cols=17 Identities=35% Similarity=0.409 Sum_probs=13.7
Q ss_pred CCEEEEcCCCchhhHHH
Q 012746 54 RDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~ 70 (457)
+-+.+.+|+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 44678999999999654
No 340
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=68.68 E-value=16 Score=34.21 Aligned_cols=60 Identities=13% Similarity=0.210 Sum_probs=51.2
Q ss_pred CCeEEEEcchHHHHHHHHHHHHHcCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCC
Q 012746 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139 (457)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~ 139 (457)
.+++||+++++.-+....+.+...+.....+++......+.........+. .+++++|..
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vLv~T~~ 317 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGK--VRTLVCSDL 317 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTS--SSEEEESSC
T ss_pred CCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCC--CcEEEEcCc
Confidence 578999999999999999999999999999999988888887777777665 778888753
No 341
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=68.52 E-value=2.2 Score=34.63 Aligned_cols=17 Identities=18% Similarity=-0.214 Sum_probs=13.9
Q ss_pred CEEEEcCCCchhhHHHH
Q 012746 55 DCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~ 71 (457)
-+++.|+.|+|||...-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46889999999997653
No 342
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=68.47 E-value=2.6 Score=35.27 Aligned_cols=17 Identities=35% Similarity=0.409 Sum_probs=14.1
Q ss_pred CCEEEEcCCCchhhHHH
Q 012746 54 RDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~ 70 (457)
+-+++.||+|+|||...
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45889999999999643
No 343
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=68.40 E-value=46 Score=31.70 Aligned_cols=31 Identities=23% Similarity=0.221 Sum_probs=19.2
Q ss_pred CEEEEcCCCchhhHHHH-Hhh-h-cCCCeEEEEc
Q 012746 55 DCFCLMPTGGGKSMCYQ-IPA-L-AKPGIVLVVS 85 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~-l~~-l-~~~~~~lvl~ 85 (457)
-+.+.+++|+|||.... ++. + ..+++++++.
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd 133 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEee
Confidence 46678999999996543 222 2 2355665554
No 344
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=68.36 E-value=1.9 Score=40.31 Aligned_cols=18 Identities=33% Similarity=0.364 Sum_probs=14.7
Q ss_pred cCCCEEEEcCCCchhhHH
Q 012746 52 SGRDCFCLMPTGGGKSMC 69 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~ 69 (457)
.+..+++.+|||+|||..
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 345788999999999954
No 345
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=68.27 E-value=2.1 Score=35.16 Aligned_cols=20 Identities=20% Similarity=0.140 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCchhhHHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~ 71 (457)
.|.-+.+.+|+|+|||..+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 35567899999999996543
No 346
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=68.25 E-value=2.5 Score=35.64 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCchhhHHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~ 71 (457)
.|.-+++.+|.|+|||..+-
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45678899999999996543
No 347
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=67.64 E-value=1.7 Score=40.24 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=15.9
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 012746 53 GRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~ 71 (457)
..++++.||+|+|||..+-
T Consensus 45 ~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GCCEEEECCGGGCTTHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4579999999999997653
No 348
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=67.41 E-value=3.6 Score=29.71 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=30.9
Q ss_pred ccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCC
Q 012746 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293 (457)
Q Consensus 259 ~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~ 293 (457)
.++++||.+-..+...+..|++.|+.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 67999999988889999999999999888888864
No 349
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=67.39 E-value=2.2 Score=35.01 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 012746 53 GRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~ 71 (457)
|..+++.++.|+|||..+-
T Consensus 8 g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4568899999999997543
No 350
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=67.20 E-value=2.6 Score=34.91 Aligned_cols=19 Identities=16% Similarity=0.100 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 012746 53 GRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~ 71 (457)
+.-+++.+++|+|||...-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999997543
No 351
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=67.12 E-value=2.4 Score=39.87 Aligned_cols=18 Identities=33% Similarity=0.292 Sum_probs=15.2
Q ss_pred cCCCEEEEcCCCchhhHH
Q 012746 52 SGRDCFCLMPTGGGKSMC 69 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~ 69 (457)
.|..+++.+|||+|||..
T Consensus 135 ~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSEEEEEECSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466789999999999954
No 352
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=66.99 E-value=5.1 Score=43.43 Aligned_cols=75 Identities=8% Similarity=0.101 Sum_probs=56.5
Q ss_pred CCccEEEEeCCcccHHHHHHHHHhC----CC----ceEeecCCCCHHHHHHHHHHHhcCCceEEEEecc-ccccCC-CCC
Q 012746 257 GDTCAIVYCLERTTCDELSAYLSAG----GI----SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGID-RKD 326 (457)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~----g~----~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~~~Gld-ip~ 326 (457)
.+.+++|.++++.-+.++++.+++. ++ .+..++|+.+..++....+.+.+ .+|+|+|+- +..-+. +.+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 4568999999999999988888753 56 78999999998888777777766 899999962 111121 557
Q ss_pred ccEEEEe
Q 012746 327 VRLVCHF 333 (457)
Q Consensus 327 v~~Vi~~ 333 (457)
+++||.-
T Consensus 176 l~~lViD 182 (1054)
T 1gku_B 176 FDFIFVD 182 (1054)
T ss_dssp CSEEEES
T ss_pred CCEEEEe
Confidence 7777753
No 353
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=66.91 E-value=2.7 Score=39.50 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=24.4
Q ss_pred cCCCC---CCHHHHHHHHH-------HHcCCC--EEEEcCCCchhhHHHH
Q 012746 34 FGHAQ---FRDKQLDAIQA-------VLSGRD--CFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 34 ~g~~~---~~~~Q~~~i~~-------~~~~~~--~lv~a~TGsGKT~~~~ 71 (457)
|.|.. +..-|.+++.. +++|.| ++.-++||+|||.+..
T Consensus 85 F~FD~Vf~~~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~ 134 (376)
T 2rep_A 85 FSFDRVFPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTME 134 (376)
T ss_dssp EECSEEECTTCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHHT
T ss_pred eeecEEcCCcccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEee
Confidence 55552 34456555533 346776 5566799999998754
No 354
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=66.75 E-value=6.2 Score=39.01 Aligned_cols=72 Identities=10% Similarity=0.081 Sum_probs=48.3
Q ss_pred CccEEEEeCCcccHHHHHHHHHhC----CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEecc-----cccc-C-CCCC
Q 012746 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGMG-I-DRKD 326 (457)
Q Consensus 258 ~~~~iIf~~s~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~G-l-dip~ 326 (457)
+.++||.++++.-+.+.++.+++. ++.+..++|+.+...+...+. ...+|+|+|.- +..| + ++.+
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 678999999999988888887764 889999999986655432221 23679999953 2222 3 5677
Q ss_pred ccEEEEe
Q 012746 327 VRLVCHF 333 (457)
Q Consensus 327 v~~Vi~~ 333 (457)
+++||.-
T Consensus 131 ~~~vViD 137 (556)
T 4a2p_A 131 FTLMIFD 137 (556)
T ss_dssp CSEEEEE
T ss_pred CCEEEEE
Confidence 8887753
No 355
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=66.69 E-value=4 Score=35.97 Aligned_cols=21 Identities=29% Similarity=0.475 Sum_probs=17.8
Q ss_pred cCCCEEEEcCCCchhhHHHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCYQI 72 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~l 72 (457)
.|..+++.+++|+|||...-+
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~~ 67 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGKI 67 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 488999999999999976543
No 356
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=66.66 E-value=2.8 Score=39.75 Aligned_cols=16 Identities=31% Similarity=0.102 Sum_probs=13.1
Q ss_pred EEEEcCCCchhhHHHH
Q 012746 56 CFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 56 ~lv~a~TGsGKT~~~~ 71 (457)
+++.||||+|||..+.
T Consensus 5 i~i~GptgsGKttla~ 20 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEECSSSSHHHHHH
T ss_pred EEEECcchhhHHHHHH
Confidence 6788999999996653
No 357
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=66.41 E-value=2.8 Score=35.54 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=16.2
Q ss_pred HHHcCCCEEEEcCCCchhhHHH
Q 012746 49 AVLSGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 49 ~~~~~~~~lv~a~TGsGKT~~~ 70 (457)
.+..|+-+.+.+|+|+|||...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 4557788889999999999644
No 358
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=66.29 E-value=7.8 Score=40.56 Aligned_cols=71 Identities=10% Similarity=0.103 Sum_probs=47.6
Q ss_pred CccEEEEeCCcccHHHHHHHHHhC----CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEecc-----cccc-C-CCCC
Q 012746 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGMG-I-DRKD 326 (457)
Q Consensus 258 ~~~~iIf~~s~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~G-l-dip~ 326 (457)
+.++||.++++.-+.+..+.+++. ++.+..+||+.+...+...+. +..+|+|+|.- +..+ + ++.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 678999999999988888877765 899999999987655432221 35789999952 2222 3 4566
Q ss_pred ccEEEE
Q 012746 327 VRLVCH 332 (457)
Q Consensus 327 v~~Vi~ 332 (457)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777774
No 359
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=66.02 E-value=4.8 Score=39.76 Aligned_cols=71 Identities=11% Similarity=0.166 Sum_probs=49.4
Q ss_pred CccEEEEeCCcccHHHHHHHHHhC----CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEecc-----cccc-C-CCCC
Q 012746 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGMG-I-DRKD 326 (457)
Q Consensus 258 ~~~~iIf~~s~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~G-l-dip~ 326 (457)
+.++||.++++.-+.+.++.+++. ++.+..++|+.+...+...+. +..+|+|+|.- +..+ + ++.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 678999999998888877777654 889999999986554322221 23679999952 2222 3 5566
Q ss_pred ccEEEE
Q 012746 327 VRLVCH 332 (457)
Q Consensus 327 v~~Vi~ 332 (457)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777774
No 360
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=65.82 E-value=4.9 Score=38.70 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=16.1
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 012746 53 GRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~ 71 (457)
.+++++.+|+|+|||..+-
T Consensus 50 ~~~iLl~GppGtGKT~lar 68 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIAR 68 (444)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 3689999999999997654
No 361
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=65.78 E-value=18 Score=33.96 Aligned_cols=59 Identities=12% Similarity=0.129 Sum_probs=50.6
Q ss_pred CCeEEEEcchHHHHHHHHHHHHHcCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECC
Q 012746 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (457)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~ 138 (457)
.+++||.++++.-+....+.+...+.....+++......+.........+. .+++++|.
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vlv~T~ 334 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGA--SRVLISTD 334 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTS--SCEEEECG
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCC--CCEEEECC
Confidence 568999999999999999999999999999999998888888877777665 67777775
No 362
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=65.72 E-value=4.8 Score=34.80 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.5
Q ss_pred CEEEEcCCCchhhHHHH
Q 012746 55 DCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~ 71 (457)
++++.++.|+|||..++
T Consensus 8 ~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAML 24 (228)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 68899999999997654
No 363
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=65.60 E-value=8.1 Score=30.66 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=31.2
Q ss_pred CCccEEEEeCCcccHHHHHHHHHhCCC-ceEeecCCCC
Q 012746 257 GDTCAIVYCLERTTCDELSAYLSAGGI-SCAAYHAGLN 293 (457)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~g~-~~~~~~~~~~ 293 (457)
++.++++||.+-..+...+..|...|+ ++..+.|++.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 456799999998889999999999999 5899999884
No 364
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=65.48 E-value=3.6 Score=40.06 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCchhhHHH
Q 012746 53 GRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~ 70 (457)
..++++.||+|+|||..+
T Consensus 201 ~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 358999999999999765
No 365
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=65.22 E-value=7.2 Score=30.06 Aligned_cols=37 Identities=16% Similarity=0.335 Sum_probs=31.8
Q ss_pred ccEEEEe-CCcccHHHHHHHHHhCCCceEeecCCCCHH
Q 012746 259 TCAIVYC-LERTTCDELSAYLSAGGISCAAYHAGLNDK 295 (457)
Q Consensus 259 ~~~iIf~-~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 295 (457)
.++++|| .+-..+...+..|+..|+++..+.|++..-
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~W 127 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKAY 127 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHHH
Confidence 6899999 577788899999999999999999988643
No 366
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=65.19 E-value=4 Score=31.39 Aligned_cols=38 Identities=16% Similarity=0.123 Sum_probs=32.1
Q ss_pred CCccEEEEeCCccc--HHHHHHHHHhCCCceEeecCCCCH
Q 012746 257 GDTCAIVYCLERTT--CDELSAYLSAGGISCAAYHAGLND 294 (457)
Q Consensus 257 ~~~~~iIf~~s~~~--~~~l~~~L~~~g~~~~~~~~~~~~ 294 (457)
++.++++||.+-.. +...+..|++.|+++..+.||+..
T Consensus 70 ~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~~ 109 (124)
T 3flh_A 70 PAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEG 109 (124)
T ss_dssp TTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHHH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHHH
Confidence 45679999998877 889999999999998888898643
No 367
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=65.14 E-value=5.3 Score=33.08 Aligned_cols=17 Identities=29% Similarity=0.276 Sum_probs=13.7
Q ss_pred CEEEEcCCCchhhHHHH
Q 012746 55 DCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~ 71 (457)
-+++.+|+|+|||...-
T Consensus 4 ii~l~G~~GaGKSTl~~ 20 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCK 20 (189)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 46789999999997554
No 368
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=64.89 E-value=4.6 Score=37.68 Aligned_cols=20 Identities=35% Similarity=0.600 Sum_probs=16.1
Q ss_pred cCCC--EEEEcCCCchhhHHHH
Q 012746 52 SGRD--CFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 52 ~~~~--~lv~a~TGsGKT~~~~ 71 (457)
.|.+ ++..++||||||.+..
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEEe
Confidence 4766 6788999999998764
No 369
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=64.60 E-value=2.3 Score=35.23 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=16.2
Q ss_pred cCCCEEEEcCCCchhhHHHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCYQI 72 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~l 72 (457)
.|..+++.+++|||||...-.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~ 23 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASR 23 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 345688999999999976543
No 370
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=64.57 E-value=4.5 Score=36.84 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=19.9
Q ss_pred CCCEEEEcCCCchhhHHHH-Hhhhc--CCCeEEEEc
Q 012746 53 GRDCFCLMPTGGGKSMCYQ-IPALA--KPGIVLVVS 85 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~-l~~l~--~~~~~lvl~ 85 (457)
+.-+.+.+|+|+|||...- +..+. .++.+.+..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3457789999999995432 32222 245555543
No 371
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=64.45 E-value=3.7 Score=37.90 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=15.0
Q ss_pred CCEEEEcCCCchhhHHH
Q 012746 54 RDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~ 70 (457)
..+++.+|+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 57999999999999765
No 372
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=64.44 E-value=3.3 Score=35.66 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=15.9
Q ss_pred HHcCCCEEEEcCCCchhhHHH
Q 012746 50 VLSGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 50 ~~~~~~~lv~a~TGsGKT~~~ 70 (457)
+-.|+-+.+.+|.|+|||...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 335677889999999999654
No 373
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=64.12 E-value=3.9 Score=33.18 Aligned_cols=19 Identities=26% Similarity=0.139 Sum_probs=16.1
Q ss_pred CCEEEEcCCCchhhHHHHH
Q 012746 54 RDCFCLMPTGGGKSMCYQI 72 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~l 72 (457)
+++++.++.|||||...-.
T Consensus 8 ~~i~l~G~~GsGKSTva~~ 26 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQE 26 (168)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 6789999999999976644
No 374
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=63.76 E-value=4.4 Score=36.48 Aligned_cols=18 Identities=17% Similarity=0.095 Sum_probs=14.4
Q ss_pred CCEEEEcCCCchhhHHHH
Q 012746 54 RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~ 71 (457)
.-+++.||+|+|||..+-
T Consensus 34 ~livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp EEEEEECCTTSCTHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 347889999999997543
No 375
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=63.67 E-value=34 Score=29.74 Aligned_cols=18 Identities=17% Similarity=0.115 Sum_probs=14.6
Q ss_pred CCEEEEcCCCchhhHHHH
Q 012746 54 RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~ 71 (457)
..+++.|++|+|||..+-
T Consensus 33 ~~i~l~G~~GsGKSTla~ 50 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHR 50 (253)
T ss_dssp EEEEEESCGGGTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357899999999997654
No 376
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=63.44 E-value=4.6 Score=35.10 Aligned_cols=73 Identities=16% Similarity=0.161 Sum_probs=46.1
Q ss_pred CCccEEEEeCCcccHHHHHHHHHhC----CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEecc-----ccc---cCCC
Q 012746 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGM---GIDR 324 (457)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~---Gldi 324 (457)
.+.+++|.+++++-+.++++.+++. ++.+..++++.....+ ......+..+|+|+|.- +.. ++++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK---FGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH---hhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 3457999999999999999888764 5666666664322111 11223456789999842 112 3566
Q ss_pred CCccEEEE
Q 012746 325 KDVRLVCH 332 (457)
Q Consensus 325 p~v~~Vi~ 332 (457)
.+++++|.
T Consensus 174 ~~~~~lVi 181 (245)
T 3dkp_A 174 ASVEWLVV 181 (245)
T ss_dssp TTCCEEEE
T ss_pred ccCcEEEE
Confidence 66766664
No 377
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=62.88 E-value=6.4 Score=30.85 Aligned_cols=39 Identities=13% Similarity=0.273 Sum_probs=33.3
Q ss_pred cCCccEEEEeCCcccHHHHHHHHHhCCC-ceEeecCCCCH
Q 012746 256 NGDTCAIVYCLERTTCDELSAYLSAGGI-SCAAYHAGLND 294 (457)
Q Consensus 256 ~~~~~~iIf~~s~~~~~~l~~~L~~~g~-~~~~~~~~~~~ 294 (457)
.++.++++||.+-..+...+..|.+.|+ ++..+.|++..
T Consensus 80 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~ 119 (137)
T 1qxn_A 80 DPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDK 119 (137)
T ss_dssp CTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHHH
Confidence 3566899999999999999999999999 58899998743
No 378
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=62.74 E-value=3.7 Score=34.57 Aligned_cols=19 Identities=26% Similarity=0.233 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~ 70 (457)
.|.-+.+.+|+|+|||..+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4566888999999999654
No 379
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=62.68 E-value=4.6 Score=32.98 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=15.3
Q ss_pred CCEEEEcCCCchhhHHHHH
Q 012746 54 RDCFCLMPTGGGKSMCYQI 72 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~l 72 (457)
+.+++.+++|+|||..+-.
T Consensus 5 ~~i~i~G~~GsGKsTla~~ 23 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARA 23 (175)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHH
Confidence 3688999999999976543
No 380
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=62.61 E-value=4.1 Score=36.97 Aligned_cols=69 Identities=12% Similarity=0.010 Sum_probs=46.6
Q ss_pred CCccEEEEeCCcccHHHHHHHHHhC-----CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccc------c-ccCCC
Q 012746 257 GDTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------G-MGIDR 324 (457)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~-----g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~------~-~Gldi 324 (457)
.+.++||.+++++-+.++++.++.. ++.+..++++.....+ .....+|+|+|.-- . ..+++
T Consensus 161 ~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l 233 (300)
T 3fmo_B 161 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDP 233 (300)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCG
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCCh
Confidence 3447999999999999988888763 4567777776543211 13456899999632 1 24667
Q ss_pred CCccEEEE
Q 012746 325 KDVRLVCH 332 (457)
Q Consensus 325 p~v~~Vi~ 332 (457)
.+++++|.
T Consensus 234 ~~l~~lVl 241 (300)
T 3fmo_B 234 KKIKVFVL 241 (300)
T ss_dssp GGCSEEEE
T ss_pred hhceEEEE
Confidence 77777774
No 381
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=62.59 E-value=3.4 Score=34.78 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=14.9
Q ss_pred CCEEEEcCCCchhhHHHH
Q 012746 54 RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~ 71 (457)
.-+++.|+.|+|||..+-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999997653
No 382
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=62.11 E-value=3.8 Score=32.76 Aligned_cols=15 Identities=27% Similarity=0.246 Sum_probs=12.5
Q ss_pred CEEEEcCCCchhhHH
Q 012746 55 DCFCLMPTGGGKSMC 69 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~ 69 (457)
-.++.+|+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 357899999999965
No 383
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=61.93 E-value=81 Score=27.51 Aligned_cols=39 Identities=10% Similarity=0.186 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCc-cEEEEeCCcccHHHHHHHHHhCCCc
Q 012746 246 YADLCSVLKANGDT-CAIVYCLERTTCDELSAYLSAGGIS 284 (457)
Q Consensus 246 ~~~l~~~l~~~~~~-~~iIf~~s~~~~~~l~~~L~~~g~~ 284 (457)
...+.++++..+.. ...|||.+...+..+.+.|++.|+.
T Consensus 187 ~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 226 (298)
T 3tb6_A 187 LEKVKATLEKNSKHMPTAILCYNDEIALKVIDMLREMDLK 226 (298)
T ss_dssp HHHHHHHHHHTTTSCCSEEECSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCCCCCeEEEEeCcHHHHHHHHHHHHcCCC
Confidence 56677777766542 5788888888888888888887653
No 384
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=61.72 E-value=8.4 Score=46.43 Aligned_cols=64 Identities=14% Similarity=0.303 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHH-HHHH---HHcCCCEEEEcCCCchhhHHHHH--hhhcC----CCeEEEEcch
Q 012746 22 EKEALVKLLRWHFGHAQFRDKQLD-AIQA---VLSGRDCFCLMPTGGGKSMCYQI--PALAK----PGIVLVVSPL 87 (457)
Q Consensus 22 l~~~~~~~l~~~~g~~~~~~~Q~~-~i~~---~~~~~~~lv~a~TGsGKT~~~~l--~~l~~----~~~~lvl~P~ 87 (457)
+.+.+.++.++ .|+. +.+.|.. +++. +.-.+.++++||||+|||.++-. .++.+ .....++-|.
T Consensus 873 l~~ai~~~~~~-~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~~al~~l~~~~~~~~~iNPK 946 (3245)
T 3vkg_A 873 LRKKIQEIAKQ-RHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDPK 946 (3245)
T ss_dssp HHHHHHHHHHH-TTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHHHHHTTTTTCEEEEEEECTT
T ss_pred HHHHHHHHHHH-cCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHHHHHHHhhCCCceEEEECCC
Confidence 55667777766 4765 6665544 4432 22456799999999999988753 23322 2234566664
No 385
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=61.72 E-value=3.1 Score=41.90 Aligned_cols=17 Identities=24% Similarity=0.219 Sum_probs=15.0
Q ss_pred CEEEEcCCCchhhHHHH
Q 012746 55 DCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~ 71 (457)
++++.||+|+|||..+-
T Consensus 329 ~vLL~GppGtGKT~LAr 345 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQ 345 (595)
T ss_dssp CEEEEESSCCTHHHHHH
T ss_pred ceEEECCCchHHHHHHH
Confidence 89999999999997553
No 386
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=61.67 E-value=4.8 Score=29.89 Aligned_cols=38 Identities=16% Similarity=0.229 Sum_probs=31.9
Q ss_pred CCccEEEEeCCcccHHHHHHHHHhCCCc-eEeecCCCCH
Q 012746 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLND 294 (457)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~g~~-~~~~~~~~~~ 294 (457)
++.++++||.+-..+...+..|...|+. +..+.|++..
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 89 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAA 89 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHHH
Confidence 4567999999888899999999999995 8888888643
No 387
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=61.61 E-value=13 Score=26.06 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=29.6
Q ss_pred cCCccEEEEeCCcccHHHHHHHHHhCCCc-eEeecCCCC
Q 012746 256 NGDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (457)
Q Consensus 256 ~~~~~~iIf~~s~~~~~~l~~~L~~~g~~-~~~~~~~~~ 293 (457)
.++.++++||.+-..+...+..|++.|+. +..+ |++.
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 35678999999988899999999999986 5555 7654
No 388
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=61.55 E-value=34 Score=32.55 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=50.7
Q ss_pred CCeEEEEcchHHHHHHHHHHHHHcCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECC
Q 012746 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (457)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~ 138 (457)
...+||.++++.-+....+.+...+..+..+++......+.........+. .+++++|.
T Consensus 300 ~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~--~~vLvaT~ 358 (434)
T 2db3_A 300 ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGS--MKVLIATS 358 (434)
T ss_dssp CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSS--CSEEEECG
T ss_pred CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCC--CcEEEEch
Confidence 445999999999999999999999999999999999888888888877765 67777775
No 389
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=61.27 E-value=7.1 Score=39.38 Aligned_cols=24 Identities=33% Similarity=0.308 Sum_probs=19.3
Q ss_pred HHHHcCCCEEEEcCCCchhhHHHH
Q 012746 48 QAVLSGRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 48 ~~~~~~~~~lv~a~TGsGKT~~~~ 71 (457)
..+..|..+++.+|+|+|||..+-
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHHHH
Confidence 344578899999999999997654
No 390
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=61.19 E-value=5.7 Score=31.50 Aligned_cols=38 Identities=16% Similarity=0.303 Sum_probs=32.3
Q ss_pred CCccEEEEeCCc--ccHHHHHHHHHhCCCceEeecCCCCH
Q 012746 257 GDTCAIVYCLER--TTCDELSAYLSAGGISCAAYHAGLND 294 (457)
Q Consensus 257 ~~~~~iIf~~s~--~~~~~l~~~L~~~g~~~~~~~~~~~~ 294 (457)
++.++++||.+- ..+...+..|+..|+++..+.||+..
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~~ 110 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEY 110 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHHH
Confidence 456789999987 57889999999999999999998743
No 391
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=61.08 E-value=21 Score=35.16 Aligned_cols=50 Identities=12% Similarity=0.039 Sum_probs=28.6
Q ss_pred cCCCEEEEcCCCchhhHHHH-Hhh--hcCCCeEEEEcchHHHHHHHHHHHHHcC
Q 012746 52 SGRDCFCLMPTGGGKSMCYQ-IPA--LAKPGIVLVVSPLIALMENQVIGLKEKG 102 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~-l~~--l~~~~~~lvl~P~~~L~~q~~~~~~~~~ 102 (457)
.|.-+++.+|+|+|||.... +.. ...+.+++++++... ..+....+..++
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~-~~~l~~~~~~~g 332 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEES-RAQLLRNAYSWG 332 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC-HHHHHHHHHTTS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcC
Confidence 45678899999999995433 221 123556777765432 224444444443
No 392
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=61.03 E-value=3.8 Score=34.09 Aligned_cols=20 Identities=20% Similarity=0.229 Sum_probs=16.3
Q ss_pred cCCCEEEEcCCCchhhHHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~ 71 (457)
++.-+++.+++|+|||...-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45678899999999997654
No 393
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=60.74 E-value=3.6 Score=34.15 Aligned_cols=18 Identities=17% Similarity=-0.018 Sum_probs=14.6
Q ss_pred CCEEEEcCCCchhhHHHH
Q 012746 54 RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~ 71 (457)
.-+++.+++|+|||...-
T Consensus 6 ~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457889999999997553
No 394
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=60.68 E-value=3.3 Score=35.13 Aligned_cols=18 Identities=22% Similarity=0.049 Sum_probs=14.1
Q ss_pred CCCEEEEcCCCchhhHHH
Q 012746 53 GRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~ 70 (457)
|.-+.+.+|+|+|||...
T Consensus 22 g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445778999999999543
No 395
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=60.44 E-value=4.7 Score=33.23 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=14.8
Q ss_pred CCEEEEcCCCchhhHHHH
Q 012746 54 RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~ 71 (457)
..+++.+++|||||..+-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 358899999999997654
No 396
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=60.41 E-value=2.9 Score=36.12 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=11.2
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~ 70 (457)
.|+-+.+.+|+|+|||...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4566788999999999543
No 397
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=60.36 E-value=6.1 Score=36.15 Aligned_cols=31 Identities=16% Similarity=0.076 Sum_probs=18.3
Q ss_pred EEEEcCCCchhhHHHH-HhhhcCCCeEEEEcc
Q 012746 56 CFCLMPTGGGKSMCYQ-IPALAKPGIVLVVSP 86 (457)
Q Consensus 56 ~lv~a~TGsGKT~~~~-l~~l~~~~~~lvl~P 86 (457)
+++.++.|+|||...- +.-...+.++.|+.|
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~ 38 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQHGYKIAVIEN 38 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSCCCCCEEEECS
T ss_pred EEEEecCCCCHHHHHHHHHhhcCCCcEEEEEe
Confidence 6788999999996432 222223344444444
No 398
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=60.29 E-value=5.6 Score=29.53 Aligned_cols=38 Identities=21% Similarity=0.355 Sum_probs=32.5
Q ss_pred CCccEEEEeCCcccHHHHHHHHHhCCCc-eEeecCCCCH
Q 012746 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLND 294 (457)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~g~~-~~~~~~~~~~ 294 (457)
++.++++||.+-..+...+..|.+.|+. +..+.|++..
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHH
Confidence 4567999999988899999999999995 8889998754
No 399
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=60.14 E-value=4 Score=34.86 Aligned_cols=56 Identities=11% Similarity=0.128 Sum_probs=39.0
Q ss_pred CCccEEEEeCCcccHHHHHHHHHhC--------CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEec
Q 012746 257 GDTCAIVYCLERTTCDELSAYLSAG--------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (457)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~--------g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~ 316 (457)
.+.+++|.+++++-+.++++.+++. +..+..++|+.+..+... . ..+..+|+|+|.
T Consensus 71 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~-~~~~~~Iiv~Tp 134 (219)
T 1q0u_A 71 AEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---K-LNVQPHIVIGTP 134 (219)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---C-CSSCCSEEEECH
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---H-cCCCCCEEEeCH
Confidence 3567999999999998888877653 567788888875433211 1 124567888884
No 400
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=59.92 E-value=4.2 Score=33.72 Aligned_cols=18 Identities=28% Similarity=0.270 Sum_probs=14.7
Q ss_pred CCEEEEcCCCchhhHHHH
Q 012746 54 RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~ 71 (457)
.-+++.+++|||||..+-
T Consensus 4 ~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457899999999997653
No 401
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=59.36 E-value=4.2 Score=34.57 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=14.4
Q ss_pred CEEEEcCCCchhhHHHHH
Q 012746 55 DCFCLMPTGGGKSMCYQI 72 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~l 72 (457)
.+++.||+|||||..+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378899999999976543
No 402
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=59.16 E-value=6.9 Score=33.59 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCchhhHHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~ 71 (457)
++..+++.|++|+|||...-
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~ 25 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSS 25 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHH
Confidence 34568899999999997654
No 403
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=59.16 E-value=4.9 Score=32.59 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=14.8
Q ss_pred CCEEEEcCCCchhhHHHH
Q 012746 54 RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~ 71 (457)
+.+++.+++|+|||...-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 357899999999997654
No 404
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=58.77 E-value=4.8 Score=33.72 Aligned_cols=20 Identities=15% Similarity=-0.039 Sum_probs=16.0
Q ss_pred cCCCEEEEcCCCchhhHHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~ 71 (457)
++.-+++.|+.|+|||...-
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 35668899999999997654
No 405
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=58.76 E-value=4.2 Score=38.10 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=13.2
Q ss_pred CEEEEcCCCchhhHHH
Q 012746 55 DCFCLMPTGGGKSMCY 70 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~ 70 (457)
-.++.+|+|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999654
No 406
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=58.65 E-value=6.6 Score=33.32 Aligned_cols=18 Identities=17% Similarity=0.113 Sum_probs=14.5
Q ss_pred CEEEEcCCCchhhHHHHH
Q 012746 55 DCFCLMPTGGGKSMCYQI 72 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~l 72 (457)
.+++.||+|||||..+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGER 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378899999999976543
No 407
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=58.35 E-value=4.9 Score=34.32 Aligned_cols=19 Identities=21% Similarity=0.252 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 012746 53 GRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~ 71 (457)
+..+++.+++|||||...-
T Consensus 4 ~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568899999999997653
No 408
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=58.34 E-value=4.2 Score=33.63 Aligned_cols=17 Identities=24% Similarity=0.050 Sum_probs=13.7
Q ss_pred CEEEEcCCCchhhHHHH
Q 012746 55 DCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~ 71 (457)
-+++.|+.|+|||...-
T Consensus 3 ~I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36889999999996543
No 409
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=58.33 E-value=8.3 Score=33.98 Aligned_cols=18 Identities=22% Similarity=-0.012 Sum_probs=14.6
Q ss_pred CCEEEEcCCCchhhHHHH
Q 012746 54 RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~ 71 (457)
.-+++.|++|+|||..+-
T Consensus 5 ~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHH
Confidence 457899999999997553
No 410
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=58.31 E-value=6.5 Score=30.39 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=32.6
Q ss_pred CCccEEEEeCCcccHHHHHHHHHhCCCc-eEeecCCCCH
Q 012746 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLND 294 (457)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~g~~-~~~~~~~~~~ 294 (457)
++.++++||.+-..+...+..|.+.|+. +..+.|++..
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 119 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSA 119 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHHH
Confidence 4568999999988899999999999985 8889998754
No 411
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=58.31 E-value=11 Score=41.36 Aligned_cols=46 Identities=17% Similarity=0.149 Sum_probs=34.3
Q ss_pred CEEEEcCCCchhhHHHH---Hhhh-c-----------CCCeEEEEcchHHHHHHHHHHHHH
Q 012746 55 DCFCLMPTGGGKSMCYQ---IPAL-A-----------KPGIVLVVSPLIALMENQVIGLKE 100 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~---l~~l-~-----------~~~~~lvl~P~~~L~~q~~~~~~~ 100 (457)
..+|.|..|||||.+.. +-.+ . ....+|+|+=|++-+.++.+++..
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~ 78 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHH
Confidence 45999999999996543 2222 2 134699999999999988887765
No 412
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=58.06 E-value=26 Score=36.46 Aligned_cols=71 Identities=4% Similarity=0.048 Sum_probs=52.6
Q ss_pred cCCccEEEEeCCcccHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEecc-c------------
Q 012746 256 NGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-F------------ 318 (457)
Q Consensus 256 ~~~~~~iIf~~s~~~~~~l~~~L~~----~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~------------ 318 (457)
..+..++|.++|+.-|.+.++.+.. .|+++..+.|+++..+|.... ..+|+++|+- +
T Consensus 122 L~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~~ 195 (844)
T 1tf5_A 122 LTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVLY 195 (844)
T ss_dssp TTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSS
T ss_pred HcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhcc
Confidence 3456799999999999888877754 589999999999987665432 3789999962 1
Q ss_pred cccCCCCCccEEEE
Q 012746 319 GMGIDRKDVRLVCH 332 (457)
Q Consensus 319 ~~Gldip~v~~Vi~ 332 (457)
...++...+.++|.
T Consensus 196 ~~~l~lr~~~~lVl 209 (844)
T 1tf5_A 196 KEQMVQRPLHFAVI 209 (844)
T ss_dssp GGGCCCCCCCEEEE
T ss_pred hhhhcccCCCEEEE
Confidence 11356677777774
No 413
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=57.87 E-value=4.8 Score=33.54 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=16.0
Q ss_pred cCCCEEEEcCCCchhhHHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~ 71 (457)
.+.-+++.+++|+|||..+-
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45668899999999997653
No 414
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=57.83 E-value=6.5 Score=40.92 Aligned_cols=19 Identities=16% Similarity=0.144 Sum_probs=16.1
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 012746 53 GRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~ 71 (457)
..++++.+|+|+|||..+-
T Consensus 201 ~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 3589999999999997654
No 415
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=57.59 E-value=4.5 Score=48.08 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=17.8
Q ss_pred HHcCCCEEEEcCCCchhhHHH
Q 012746 50 VLSGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 50 ~~~~~~~lv~a~TGsGKT~~~ 70 (457)
+..++.++++||||+|||..+
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 335789999999999999765
No 416
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=57.58 E-value=10 Score=28.25 Aligned_cols=38 Identities=8% Similarity=0.082 Sum_probs=32.3
Q ss_pred cCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCC
Q 012746 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293 (457)
Q Consensus 256 ~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~ 293 (457)
.++.++++||.+-..+...+..|+..|+....+.|++.
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 45678999999988899999999999986677888875
No 417
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=57.52 E-value=4.4 Score=33.26 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=15.2
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~ 70 (457)
+|..+.+.++.|+|||...
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3556789999999999654
No 418
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=57.41 E-value=4.5 Score=33.23 Aligned_cols=16 Identities=25% Similarity=0.052 Sum_probs=13.1
Q ss_pred CEEEEcCCCchhhHHH
Q 012746 55 DCFCLMPTGGGKSMCY 70 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~ 70 (457)
-.++.+|+|+|||...
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4578999999999654
No 419
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=57.21 E-value=7 Score=32.67 Aligned_cols=42 Identities=12% Similarity=-0.001 Sum_probs=23.7
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccC
Q 012746 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (457)
Q Consensus 157 ~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~ 203 (457)
...+++|+||+..+..... .....+..+... ..++++-|.|.
T Consensus 104 ~~~dvlilDE~g~~~~~~~---~~~~~l~~~l~~--~~~~ilgti~v 145 (189)
T 2i3b_A 104 PGQRVCVIDEIGKMELFSQ---LFIQAVRQTLST--PGTIILGTIPV 145 (189)
T ss_dssp SCCCCEEECCCSTTTTTCS---HHHHHHHHHHHC--SSCCEEEECCC
T ss_pred cCCCEEEEeCCCccccccH---HHHHHHHHHHhC--CCcEEEEEeec
Confidence 3468999999877632211 223555555553 23455546665
No 420
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=57.04 E-value=4 Score=34.53 Aligned_cols=18 Identities=17% Similarity=-0.201 Sum_probs=14.1
Q ss_pred CCCEEEEcCCCchhhHHH
Q 012746 53 GRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~ 70 (457)
|.-+.+.+|+|||||...
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 345678999999999654
No 421
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=56.91 E-value=5.9 Score=33.86 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=14.5
Q ss_pred CCEEEEcCCCchhhHHHH
Q 012746 54 RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~ 71 (457)
..+.+.+|+|||||..+-
T Consensus 6 ~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457889999999997554
No 422
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=56.73 E-value=13 Score=34.57 Aligned_cols=72 Identities=15% Similarity=0.105 Sum_probs=51.6
Q ss_pred CCccEEEEeCCcccHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEecc-----cc-ccCCCCC
Q 012746 257 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FG-MGIDRKD 326 (457)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~----~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~-~Gldip~ 326 (457)
.+.+++|.++++.-+.++++.+.+ .++.+..++|+.+..+....+. ..+|+|+|.- +. ..++..+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 456899999999999888887765 3678899999988766554433 4679999942 12 2345667
Q ss_pred ccEEEEe
Q 012746 327 VRLVCHF 333 (457)
Q Consensus 327 v~~Vi~~ 333 (457)
+++||.-
T Consensus 163 ~~~vIiD 169 (394)
T 1fuu_A 163 IKMFILD 169 (394)
T ss_dssp CCEEEEE
T ss_pred CcEEEEE
Confidence 7777753
No 423
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=56.70 E-value=5.5 Score=33.40 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=14.7
Q ss_pred CCEEEEcCCCchhhHHHH
Q 012746 54 RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~ 71 (457)
..+++.+++|+|||..+-
T Consensus 21 ~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 358889999999997654
No 424
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=56.69 E-value=6.3 Score=32.55 Aligned_cols=16 Identities=19% Similarity=0.117 Sum_probs=13.1
Q ss_pred CEEEEcCCCchhhHHH
Q 012746 55 DCFCLMPTGGGKSMCY 70 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~ 70 (457)
.+.+.+|.|+|||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999643
No 425
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=56.40 E-value=4.7 Score=33.34 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 012746 53 GRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~ 71 (457)
+..+++.++.|+|||...-
T Consensus 13 ~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4467899999999996543
No 426
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=56.20 E-value=4.8 Score=33.29 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=14.0
Q ss_pred CEEEEcCCCchhhHHHH
Q 012746 55 DCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~ 71 (457)
-+++.+++|||||...-
T Consensus 8 ~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47789999999997654
No 427
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=56.09 E-value=6.6 Score=33.53 Aligned_cols=19 Identities=11% Similarity=0.025 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 012746 53 GRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~ 71 (457)
+..+++.|++|+|||...-
T Consensus 5 ~~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCE 23 (222)
T ss_dssp SCCEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3568999999999997654
No 428
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=56.08 E-value=4.6 Score=33.17 Aligned_cols=20 Identities=20% Similarity=0.122 Sum_probs=12.0
Q ss_pred CCCEEEEcCCCchhhHHHHH
Q 012746 53 GRDCFCLMPTGGGKSMCYQI 72 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~l 72 (457)
+.-+++.++.|+|||..+-.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~ 24 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHT 24 (183)
T ss_dssp CCEEEEECCC----CHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45688999999999976543
No 429
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=56.04 E-value=5.5 Score=34.65 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~ 70 (457)
.|+-+.+.+|.|+|||...
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTML 48 (235)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 4667889999999999643
No 430
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=55.76 E-value=5.4 Score=33.82 Aligned_cols=30 Identities=13% Similarity=0.066 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHcCCCEEEEcCCCchhhHHH
Q 012746 40 RDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 40 ~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 70 (457)
++.++... ....|.-+++.+++|+|||...
T Consensus 13 ~~~~r~~~-~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 13 TRSERTEL-RNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CHHHHHHH-HTSSCEEEEEECSTTSSHHHHH
T ss_pred CHHHhhcc-cCCCCCEEEEECCCCCCHHHHH
Confidence 34444442 2335667888999999999654
No 431
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=55.72 E-value=31 Score=34.37 Aligned_cols=78 Identities=10% Similarity=-0.006 Sum_probs=58.6
Q ss_pred CCeEEEEcchHHHHHHHHHHHHHc---CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhh
Q 012746 78 PGIVLVVSPLIALMENQVIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH 154 (457)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~ 154 (457)
+.++||.++++.-+....+.++.. +..+..+++......+.........+. .+++++|...- .-.
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~--~~vLVaT~~~~----------~Gi 355 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDE--SGILVCTDVGA----------RGM 355 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCS--SEEEEECGGGT----------SSC
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCC--CeEEEEcchhh----------cCC
Confidence 678999999999999999999876 788888999998888888887777765 67777775322 122
Q ss_pred hcCCccEEEEecc
Q 012746 155 SRGLLNLVAIDEA 167 (457)
Q Consensus 155 ~~~~l~~lViDEa 167 (457)
+...+++||.-..
T Consensus 356 Dip~v~~VI~~~~ 368 (579)
T 3sqw_A 356 DFPNVHEVLQIGV 368 (579)
T ss_dssp CCTTCCEEEEESC
T ss_pred CcccCCEEEEcCC
Confidence 3444777775443
No 432
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=55.61 E-value=21 Score=37.14 Aligned_cols=56 Identities=9% Similarity=0.038 Sum_probs=43.8
Q ss_pred cCCccEEEEeCCcccHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEecc
Q 012746 256 NGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (457)
Q Consensus 256 ~~~~~~iIf~~s~~~~~~l~~~L~~----~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~ 317 (457)
..+..++|.++|+.-|.+.++.+.. .|+++..+.|+++...|.... ..+|+|+|+.
T Consensus 113 l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpg 172 (853)
T 2fsf_A 113 LTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNN 172 (853)
T ss_dssp TTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHH
T ss_pred HcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCc
Confidence 3456799999999999888777654 589999999999986654432 3789999963
No 433
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=55.45 E-value=5.3 Score=33.63 Aligned_cols=16 Identities=19% Similarity=0.032 Sum_probs=13.2
Q ss_pred EEEEcCCCchhhHHHH
Q 012746 56 CFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 56 ~lv~a~TGsGKT~~~~ 71 (457)
+.+.||.|||||...-
T Consensus 5 i~l~G~~GsGKST~~~ 20 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIAN 20 (206)
T ss_dssp EEEECSTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6788999999997653
No 434
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=55.38 E-value=5.6 Score=32.08 Aligned_cols=17 Identities=18% Similarity=0.063 Sum_probs=14.0
Q ss_pred CEEEEcCCCchhhHHHH
Q 012746 55 DCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~ 71 (457)
.+++.++.|||||..+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 37889999999997654
No 435
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=55.25 E-value=31 Score=34.05 Aligned_cols=61 Identities=11% Similarity=0.092 Sum_probs=50.6
Q ss_pred CCCeEEEEcchHHHHHHHHHHHHHc---CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCC
Q 012746 77 KPGIVLVVSPLIALMENQVIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139 (457)
Q Consensus 77 ~~~~~lvl~P~~~L~~q~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~ 139 (457)
.+.++||.++++.-+....+.+... +..+..+++......+.........+. .+++++|..
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~--~~vLvaT~~ 401 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDE--SGILVCTDV 401 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCS--SEEEEECGG
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCC--CCEEEEcch
Confidence 3679999999999999999998876 788888999998888888888777765 677777753
No 436
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=55.05 E-value=6.7 Score=33.32 Aligned_cols=16 Identities=31% Similarity=0.409 Sum_probs=13.1
Q ss_pred EEEEcCCCchhhHHHH
Q 012746 56 CFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 56 ~lv~a~TGsGKT~~~~ 71 (457)
+++.+|+||||+..+.
T Consensus 3 Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6788999999996543
No 437
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=60.00 E-value=2.5 Score=34.55 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=42.6
Q ss_pred CCeEEEEcchHHHHHHHHHHHHHcCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEEC
Q 012746 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137 (457)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t 137 (457)
.+++||.++++.-+....+.+...+..+..+++......+.........+. .+++++|
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~--~~vLvaT 87 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR--VNVLVAT 87 (170)
Confidence 567899999999999999999888888877877776666655555554443 5555555
No 438
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=54.82 E-value=7 Score=34.31 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=16.2
Q ss_pred cCCCEEEEcCCCchhhHHHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCYQI 72 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~l 72 (457)
.+..+.+.+|+|+|||...-+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~ 46 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKA 46 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 345688999999999976543
No 439
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=54.77 E-value=6.4 Score=34.01 Aligned_cols=20 Identities=30% Similarity=0.358 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCchhhHHHHH
Q 012746 53 GRDCFCLMPTGGGKSMCYQI 72 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~l 72 (457)
+..+++.+++|+|||..+-.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~ 35 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPK 35 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45789999999999976543
No 440
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=54.63 E-value=5.7 Score=33.33 Aligned_cols=16 Identities=31% Similarity=0.331 Sum_probs=13.7
Q ss_pred CEEEEcCCCchhhHHH
Q 012746 55 DCFCLMPTGGGKSMCY 70 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~ 70 (457)
-+++.++.|||||...
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999765
No 441
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=54.46 E-value=5.5 Score=34.05 Aligned_cols=20 Identities=15% Similarity=0.041 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCchhhHHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~ 71 (457)
.|.-+.+.+|+|+|||....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45568899999999996543
No 442
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=54.45 E-value=5.2 Score=33.68 Aligned_cols=18 Identities=28% Similarity=0.012 Sum_probs=14.7
Q ss_pred CCCEEEEcCCCchhhHHH
Q 012746 53 GRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~ 70 (457)
+.-+++.|+.|||||...
T Consensus 4 ~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 445789999999999754
No 443
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=54.42 E-value=5.4 Score=33.50 Aligned_cols=17 Identities=29% Similarity=0.044 Sum_probs=13.9
Q ss_pred CEEEEcCCCchhhHHHH
Q 012746 55 DCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~ 71 (457)
.+.+.+++|+|||...-
T Consensus 3 ~i~i~G~~GsGKSTl~~ 19 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQ 19 (204)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 46789999999997654
No 444
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=54.39 E-value=8.2 Score=39.85 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=19.7
Q ss_pred HHHHHHcCCC--EEEEcCCCchhhHHH
Q 012746 46 AIQAVLSGRD--CFCLMPTGGGKSMCY 70 (457)
Q Consensus 46 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 70 (457)
.+..+++|.| ++.-+.||||||.+.
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 5677788977 555679999999875
No 445
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=53.75 E-value=5.3 Score=37.49 Aligned_cols=15 Identities=27% Similarity=0.193 Sum_probs=12.5
Q ss_pred CEEEEcCCCchhhHH
Q 012746 55 DCFCLMPTGGGKSMC 69 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~ 69 (457)
-.++.|+||+|||.+
T Consensus 27 l~vi~G~NGaGKT~i 41 (371)
T 3auy_A 27 IVAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 357899999999964
No 446
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=53.68 E-value=6 Score=33.03 Aligned_cols=16 Identities=25% Similarity=0.212 Sum_probs=13.3
Q ss_pred CEEEEcCCCchhhHHH
Q 012746 55 DCFCLMPTGGGKSMCY 70 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~ 70 (457)
.+++.|++|+|||...
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3678999999999754
No 447
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=53.63 E-value=6.4 Score=34.29 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~ 70 (457)
++.-+.+.||.|+|||...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3467889999999999654
No 448
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=53.53 E-value=7.3 Score=33.39 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=14.1
Q ss_pred CCEEEEcCCCchhhHHHH
Q 012746 54 RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~ 71 (457)
+-+++.+|+|+||+..+.
T Consensus 30 kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp EEEEEECCTTCCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 457788999999986543
No 449
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=53.16 E-value=8.8 Score=29.98 Aligned_cols=38 Identities=26% Similarity=0.384 Sum_probs=32.1
Q ss_pred CCccEEEEeCCcccHHHHHHHHHhCCCc-eEeecCCCCH
Q 012746 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLND 294 (457)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~g~~-~~~~~~~~~~ 294 (457)
++.++++||.+-..+...+..|.+.|+. +..+.|++..
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 128 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMND 128 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHHH
Confidence 4567999999988889999999999995 8888998743
No 450
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=53.04 E-value=11 Score=29.14 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=31.8
Q ss_pred CCccEEEEeCCcccHHHHHHHHHhCCCc-eEeecCCCC
Q 012746 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (457)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~g~~-~~~~~~~~~ 293 (457)
++.++++||.+-..+...+..|.+.|+. +..+.|++.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 4567999999988899999999999995 888889884
No 451
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=53.02 E-value=7 Score=30.53 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=32.3
Q ss_pred CCccEEEEeCCcccHHHHHHHHHhCCCc-eEeecCCCCH
Q 012746 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLND 294 (457)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~g~~-~~~~~~~~~~ 294 (457)
++.++++||.+-..+...+..|+..|+. +..+.|++..
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~ 123 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFGA 123 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHHH
Confidence 4567999999988888999999999995 8899998743
No 452
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=52.83 E-value=7.6 Score=33.19 Aligned_cols=19 Identities=26% Similarity=0.251 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~ 70 (457)
.|+-+.+.+|.|+|||...
T Consensus 34 ~Ge~~~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLL 52 (214)
T ss_dssp TTCCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677889999999999643
No 453
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=52.78 E-value=6.1 Score=33.29 Aligned_cols=19 Identities=21% Similarity=0.020 Sum_probs=15.3
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~ 70 (457)
.+.-+++.|+.|+|||...
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 3456889999999999754
No 454
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=52.77 E-value=6.3 Score=33.22 Aligned_cols=19 Identities=16% Similarity=-0.192 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 012746 53 GRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~ 71 (457)
+.-+.+.+++|+|||..+-
T Consensus 21 ~~~i~i~G~~GsGKSTl~~ 39 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAK 39 (207)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4457789999999997543
No 455
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=52.48 E-value=6.8 Score=34.10 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~ 70 (457)
.|+-+.+.+|.|+|||...
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLL 48 (237)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667889999999999643
No 456
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=52.19 E-value=14 Score=32.70 Aligned_cols=53 Identities=9% Similarity=-0.031 Sum_probs=33.2
Q ss_pred cCCCEEEEcCCCchhh-HHHH--HhhhcCCCeEEEEcchHHHHHHHHHHHHHcCCce
Q 012746 52 SGRDCFCLMPTGGGKS-MCYQ--IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAG 105 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT-~~~~--l~~l~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 105 (457)
.|..+++.+.+|+||| +++. ...+.++.++++++-... ..+..+.++.+|...
T Consensus 20 ~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e~-~~~l~~~~~~~G~dl 75 (260)
T 3bs4_A 20 HSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISYP-LQLIIRILSRFGVDV 75 (260)
T ss_dssp TCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSSC-HHHHHHHHHHTTCCH
T ss_pred CCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeCC-HHHHHHHHHHcCCCH
Confidence 3456778756665555 4433 345667888888876433 356677778877654
No 457
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=52.11 E-value=6.5 Score=33.18 Aligned_cols=19 Identities=21% Similarity=-0.036 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~ 70 (457)
++.-+++.++.|||||...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3566889999999999754
No 458
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=51.84 E-value=31 Score=36.21 Aligned_cols=55 Identities=9% Similarity=0.098 Sum_probs=44.0
Q ss_pred cCCccEEEEeCCcccHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEec
Q 012746 256 NGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (457)
Q Consensus 256 ~~~~~~iIf~~s~~~~~~l~~~L~~----~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~ 316 (457)
..+..++|.++|+.-|.+.++.+.. .|+++..+.|+++..+|.... ..+|+++|+
T Consensus 150 L~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTp 208 (922)
T 1nkt_A 150 LAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTN 208 (922)
T ss_dssp TTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred HhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 3456799999999998888777654 589999999999987665543 378999996
No 459
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=51.65 E-value=6.7 Score=32.41 Aligned_cols=15 Identities=20% Similarity=0.003 Sum_probs=12.8
Q ss_pred EEEEcCCCchhhHHH
Q 012746 56 CFCLMPTGGGKSMCY 70 (457)
Q Consensus 56 ~lv~a~TGsGKT~~~ 70 (457)
+++.|+.|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999754
No 460
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=51.60 E-value=8.1 Score=32.91 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 012746 53 GRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~ 71 (457)
+..+++.+++|||||...-
T Consensus 5 ~~~I~l~G~~GsGKsT~a~ 23 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCE 23 (217)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3468899999999997654
No 461
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=51.53 E-value=19 Score=33.72 Aligned_cols=60 Identities=10% Similarity=0.080 Sum_probs=45.3
Q ss_pred CCeEEEEcchHHHHHHHHHHHHHcCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCC
Q 012746 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139 (457)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~ 139 (457)
.+++||+++++.-+....+.+...+.....+++......+.........+. .+++++|..
T Consensus 280 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vlv~T~~ 339 (414)
T 3eiq_A 280 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGS--SRVLITTDL 339 (414)
T ss_dssp CSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC-----CEEECSS
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCC--CcEEEECCc
Confidence 568999999999999999999999999999998888888777777776655 667777753
No 462
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=51.48 E-value=9.8 Score=39.55 Aligned_cols=16 Identities=38% Similarity=0.405 Sum_probs=14.3
Q ss_pred CEEEEcCCCchhhHHH
Q 012746 55 DCFCLMPTGGGKSMCY 70 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~ 70 (457)
++++.||||+|||..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4999999999999765
No 463
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=51.19 E-value=9 Score=36.00 Aligned_cols=19 Identities=21% Similarity=0.177 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~ 70 (457)
.|+-+++.+|+|+|||...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp TCCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3567889999999999654
No 464
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=51.14 E-value=6.4 Score=33.43 Aligned_cols=17 Identities=24% Similarity=0.079 Sum_probs=13.9
Q ss_pred CEEEEcCCCchhhHHHH
Q 012746 55 DCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~ 71 (457)
.+++.+++|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999997653
No 465
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=50.84 E-value=5.6 Score=32.64 Aligned_cols=16 Identities=13% Similarity=-0.004 Sum_probs=12.8
Q ss_pred CEEEEcCCCchhhHHH
Q 012746 55 DCFCLMPTGGGKSMCY 70 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~ 70 (457)
-+.+++++|+|||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4668899999999654
No 466
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=50.84 E-value=10 Score=35.18 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=21.5
Q ss_pred CCCEEEEcCCCchhhHHHH-Hhhhc--C------CCeEEEEcc
Q 012746 53 GRDCFCLMPTGGGKSMCYQ-IPALA--K------PGIVLVVSP 86 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~-l~~l~--~------~~~~lvl~P 86 (457)
|.-+.+.+|+|+|||.... +.... . ++.++++.-
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~ 173 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 173 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC
Confidence 3457789999999995443 33322 1 256677653
No 467
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=50.63 E-value=7.5 Score=34.07 Aligned_cols=19 Identities=26% Similarity=0.191 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~ 70 (457)
.|+-+.+.+|.|+|||...
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl 52 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLT 52 (247)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667889999999999644
No 468
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=50.47 E-value=7.4 Score=32.87 Aligned_cols=16 Identities=25% Similarity=0.231 Sum_probs=12.9
Q ss_pred CEEEEcCCCchhhHHH
Q 012746 55 DCFCLMPTGGGKSMCY 70 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~ 70 (457)
-.++.+|+|+|||.+.
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4578899999999653
No 469
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=50.45 E-value=19 Score=43.47 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=16.9
Q ss_pred HHcCCCEEEEcCCCchhhHH
Q 012746 50 VLSGRDCFCLMPTGGGKSMC 69 (457)
Q Consensus 50 ~~~~~~~lv~a~TGsGKT~~ 69 (457)
+..++.++++||||+|||..
T Consensus 1301 l~~~~pvLL~GptGtGKT~l 1320 (3245)
T 3vkg_A 1301 LSEHRPLILCGPPGSGKTMT 1320 (3245)
T ss_dssp HHTTCCCEEESSTTSSHHHH
T ss_pred HHCCCcEEEECCCCCCHHHH
Confidence 34678999999999999954
No 470
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=50.29 E-value=7.3 Score=33.40 Aligned_cols=16 Identities=25% Similarity=0.362 Sum_probs=13.5
Q ss_pred EEEEcCCCchhhHHHH
Q 012746 56 CFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 56 ~lv~a~TGsGKT~~~~ 71 (457)
+++.+++|+|||...-
T Consensus 3 I~l~G~~GsGKsT~a~ 18 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGN 18 (223)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999997554
No 471
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=50.24 E-value=7 Score=38.36 Aligned_cols=18 Identities=22% Similarity=0.178 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCchhhHH
Q 012746 52 SGRDCFCLMPTGGGKSMC 69 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~ 69 (457)
++.++++.++||||||.+
T Consensus 166 ~~pHlLIaG~TGSGKSt~ 183 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVG 183 (512)
T ss_dssp GSCSEEEECCTTSSHHHH
T ss_pred cCceEEEECCCCCCHHHH
Confidence 356899999999999964
No 472
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=50.23 E-value=7.6 Score=34.69 Aligned_cols=19 Identities=32% Similarity=0.312 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~ 70 (457)
+|.-+.+.+|.|+|||...
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl 51 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLF 51 (275)
T ss_dssp TTSEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667889999999999643
No 473
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=50.21 E-value=7.9 Score=33.45 Aligned_cols=19 Identities=26% Similarity=0.244 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~ 70 (457)
.|+-+.+.+|.|+|||...
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl 51 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLL 51 (229)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667889999999999643
No 474
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=50.02 E-value=8.2 Score=32.15 Aligned_cols=18 Identities=22% Similarity=0.027 Sum_probs=14.4
Q ss_pred CEEEEcCCCchhhHHHHH
Q 012746 55 DCFCLMPTGGGKSMCYQI 72 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~l 72 (457)
.+.+.+++|||||...-.
T Consensus 10 ~I~i~G~~GsGKST~~~~ 27 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAAL 27 (203)
T ss_dssp EEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 477889999999976544
No 475
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=50.01 E-value=7.9 Score=35.19 Aligned_cols=19 Identities=32% Similarity=0.492 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~ 70 (457)
.|+-+.+++|+|+|||...
T Consensus 79 ~Ge~vaivG~sGsGKSTLl 97 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTIL 97 (306)
T ss_dssp TTCEEEEESSSCHHHHHHH
T ss_pred CCCEEEEECCCCchHHHHH
Confidence 4677889999999999644
No 476
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=49.95 E-value=9.8 Score=31.93 Aligned_cols=56 Identities=7% Similarity=-0.006 Sum_probs=34.2
Q ss_pred CCccEEEEeCCcccHHH-HHHHHHh---CCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEec
Q 012746 257 GDTCAIVYCLERTTCDE-LSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (457)
Q Consensus 257 ~~~~~iIf~~s~~~~~~-l~~~L~~---~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~ 316 (457)
.+.+++|.++++..+.+ +.+.+.. .++.+..++|+.....+..... +..+|+|+|.
T Consensus 81 ~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 81 EPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 36789999999988777 5555544 3678888888764332211111 2467888885
No 477
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=49.82 E-value=7.5 Score=33.89 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 012746 53 GRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~ 71 (457)
+..+++.+|.|+|||..+-
T Consensus 29 ~~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3468899999999997654
No 478
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=49.72 E-value=7.9 Score=34.24 Aligned_cols=19 Identities=42% Similarity=0.546 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~ 70 (457)
.|+-+.+.+|.|+|||...
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl 63 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIA 63 (260)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677889999999999643
No 479
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=49.64 E-value=7.6 Score=32.19 Aligned_cols=16 Identities=31% Similarity=0.106 Sum_probs=13.0
Q ss_pred EEEEcCCCchhhHHHH
Q 012746 56 CFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 56 ~lv~a~TGsGKT~~~~ 71 (457)
+++.|+.|+|||...-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 5788999999996543
No 480
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=49.38 E-value=23 Score=31.38 Aligned_cols=39 Identities=18% Similarity=0.195 Sum_probs=33.8
Q ss_pred cCCccEEEEeCCcccHHHHHHHHHhCCC-ceEeecCCCCH
Q 012746 256 NGDTCAIVYCLERTTCDELSAYLSAGGI-SCAAYHAGLND 294 (457)
Q Consensus 256 ~~~~~~iIf~~s~~~~~~l~~~L~~~g~-~~~~~~~~~~~ 294 (457)
.++.++++||.+-..+...+..|...|+ ++..|.|++..
T Consensus 228 ~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~ 267 (280)
T 1urh_A 228 SYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSE 267 (280)
T ss_dssp CSSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC
T ss_pred CCCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHH
Confidence 3567899999999999999999999999 48999999865
No 481
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=49.29 E-value=8.1 Score=35.05 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=19.8
Q ss_pred CCEEEEcCCCchhhHHHH-Hhhhc--CCCeEEEEc
Q 012746 54 RDCFCLMPTGGGKSMCYQ-IPALA--KPGIVLVVS 85 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~-l~~l~--~~~~~lvl~ 85 (457)
.-+.+.+|+|+|||...- +..+. .++.+.+..
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 346789999999996432 32221 355665554
No 482
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=49.00 E-value=8.3 Score=34.25 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~ 70 (457)
.|+-+.+.+|.|+|||...
T Consensus 36 ~Ge~~~liG~nGsGKSTLl 54 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLL 54 (266)
T ss_dssp TTCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 4667889999999999644
No 483
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=48.95 E-value=10 Score=39.42 Aligned_cols=17 Identities=29% Similarity=0.305 Sum_probs=14.8
Q ss_pred CEEEEcCCCchhhHHHH
Q 012746 55 DCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~ 71 (457)
++++.+|||+|||..+-
T Consensus 490 ~~ll~G~~GtGKT~la~ 506 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTV 506 (758)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 58999999999997653
No 484
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=48.60 E-value=33 Score=36.12 Aligned_cols=58 Identities=12% Similarity=0.080 Sum_probs=45.4
Q ss_pred HhcCCccEEEEeCCcccHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEecc
Q 012746 254 KANGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (457)
Q Consensus 254 ~~~~~~~~iIf~~s~~~~~~l~~~L~~----~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~ 317 (457)
....+..++|.++|..-|.+.++.+.. .|+++..+.|+++..+|.... ..+|+++|..
T Consensus 116 ~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTpg 177 (997)
T 2ipc_A 116 NALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTNS 177 (997)
T ss_dssp HHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEHH
T ss_pred HHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECch
Confidence 334556799999999988887776654 589999999999987766544 3789999964
No 485
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=48.58 E-value=8 Score=33.30 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=14.8
Q ss_pred cCCCEEEEcCCCchhhHH
Q 012746 52 SGRDCFCLMPTGGGKSMC 69 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~ 69 (457)
.|.-+.+.+|.|+|||..
T Consensus 29 ~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp TTCEEEEEECTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456678999999999964
No 486
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=48.47 E-value=7.6 Score=31.35 Aligned_cols=18 Identities=17% Similarity=0.124 Sum_probs=14.4
Q ss_pred cCCCEEEEcCCCchhhHH
Q 012746 52 SGRDCFCLMPTGGGKSMC 69 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~ 69 (457)
.|.-+.+.+|.|+|||..
T Consensus 32 ~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SCEEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455677899999999954
No 487
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=48.13 E-value=21 Score=32.21 Aligned_cols=70 Identities=19% Similarity=0.122 Sum_probs=50.1
Q ss_pred CccEEEEeCCcccHHHHHHHHHhC----CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccc-----cc-cCCCCCc
Q 012746 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-----GM-GIDRKDV 327 (457)
Q Consensus 258 ~~~~iIf~~s~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~-----~~-Gldip~v 327 (457)
+.+++|.++++.-+.+.++.+++. +..+..++|+.+..+.... +. ..+|+|+|.-. .. .+++.++
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 567999999999999999888753 5788899999887654332 22 37899999521 22 3456667
Q ss_pred cEEEE
Q 012746 328 RLVCH 332 (457)
Q Consensus 328 ~~Vi~ 332 (457)
++||.
T Consensus 131 ~~iVi 135 (337)
T 2z0m_A 131 EIVII 135 (337)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 77764
No 488
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=48.06 E-value=8.7 Score=33.88 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~ 70 (457)
.|.-+.+.+|.|+|||...
T Consensus 32 ~Ge~~~liG~nGsGKSTLl 50 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLI 50 (257)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667889999999999643
No 489
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=48.04 E-value=10 Score=29.83 Aligned_cols=38 Identities=16% Similarity=0.229 Sum_probs=31.5
Q ss_pred CCccEEEEeCCcccHHHHHHHHHhCCCc-eEeecCCCCH
Q 012746 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLND 294 (457)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~g~~-~~~~~~~~~~ 294 (457)
++.++++||.+-..+...+..|...|+. +..+.||+..
T Consensus 55 ~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~ 93 (141)
T 3ilm_A 55 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAA 93 (141)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHHH
T ss_pred CCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHHH
Confidence 4567899999888888999999999985 8888888643
No 490
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=47.91 E-value=7.9 Score=32.51 Aligned_cols=16 Identities=13% Similarity=-0.259 Sum_probs=13.1
Q ss_pred CEEEEcCCCchhhHHH
Q 012746 55 DCFCLMPTGGGKSMCY 70 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~ 70 (457)
-+.+.+++|+|||...
T Consensus 24 ~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLA 39 (201)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999654
No 491
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=47.90 E-value=8.5 Score=32.21 Aligned_cols=39 Identities=15% Similarity=-0.074 Sum_probs=22.8
Q ss_pred CEEEEcCCCchhhHHHHHhhhcCCCeEEEEcchHHHHHHHHH
Q 012746 55 DCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVI 96 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~l~~l~~~~~~lvl~P~~~L~~q~~~ 96 (457)
.+.+.+++|||||.+.-..+-..+ +.+..+-.++.+...
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg---~~vid~D~~~~~~~~ 52 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYG---AHVVNVDRIGHEVLE 52 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC---CEEEECcHHHHHHHH
Confidence 366889999999976543332212 233455555555443
No 492
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=47.88 E-value=8.8 Score=33.42 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~ 70 (457)
.|.-+.+.+|.|+|||...
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl 49 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTL 49 (240)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667889999999999643
No 493
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=47.62 E-value=12 Score=41.07 Aligned_cols=32 Identities=6% Similarity=-0.088 Sum_probs=25.9
Q ss_pred ccEEEEeCCcc-cHHHHHHHHHhCCCceEeecC
Q 012746 259 TCAIVYCLERT-TCDELSAYLSAGGISCAAYHA 290 (457)
Q Consensus 259 ~~~iIf~~s~~-~~~~l~~~L~~~g~~~~~~~~ 290 (457)
+.+.|.+.+.. .+..+...|.+.|+++....+
T Consensus 343 ~diAVL~R~~~~~~~~i~~~L~~~gIP~~~~~~ 375 (1166)
T 3u4q_B 343 KDVAILARQPEDYKDMVKEVFADYEIPYFIDGK 375 (1166)
T ss_dssp GGEEEEESCGGGTHHHHHHHHHHTTCCEEESSC
T ss_pred hheEEEeCChHHHHHHHHHHHHHcCCCEEECCC
Confidence 45888999874 788999999999999766544
No 494
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=47.61 E-value=7.6 Score=33.91 Aligned_cols=19 Identities=32% Similarity=0.450 Sum_probs=15.3
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~ 70 (457)
.|+-+.+.+|.|+|||...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl 45 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIF 45 (243)
T ss_dssp TTEEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4566889999999999643
No 495
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=47.34 E-value=9.2 Score=33.84 Aligned_cols=19 Identities=26% Similarity=0.323 Sum_probs=15.2
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~ 70 (457)
.|.-+.+.+|.|+|||...
T Consensus 31 ~Ge~~~liG~nGsGKSTLl 49 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFL 49 (262)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4566789999999999643
No 496
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=47.26 E-value=8.7 Score=32.62 Aligned_cols=17 Identities=24% Similarity=0.047 Sum_probs=13.9
Q ss_pred CEEEEcCCCchhhHHHH
Q 012746 55 DCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~ 71 (457)
-+.+.++.|||||...-
T Consensus 6 ~I~i~G~~GSGKST~~~ 22 (218)
T 1vht_A 6 IVALTGGIGSGKSTVAN 22 (218)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47789999999997654
No 497
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=46.99 E-value=9.5 Score=33.48 Aligned_cols=19 Identities=32% Similarity=0.433 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~ 70 (457)
.|.-+.+.+|.|+|||...
T Consensus 25 ~Ge~~~liG~NGsGKSTLl 43 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLL 43 (249)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 4667889999999999643
No 498
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=46.89 E-value=8.8 Score=34.59 Aligned_cols=16 Identities=38% Similarity=0.434 Sum_probs=12.7
Q ss_pred CEEEEcCCCchhhHHH
Q 012746 55 DCFCLMPTGGGKSMCY 70 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~ 70 (457)
-+.+.|++|+|||..+
T Consensus 33 ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3567899999999654
No 499
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=46.75 E-value=17 Score=37.07 Aligned_cols=71 Identities=8% Similarity=0.139 Sum_probs=49.5
Q ss_pred ccEEEEeCCcccHHHHHHHHHhC----CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEecc-----cccc-C-CCCCc
Q 012746 259 TCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGMG-I-DRKDV 327 (457)
Q Consensus 259 ~~~iIf~~s~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~G-l-dip~v 327 (457)
+++||.++++.-+.+..+.+++. ++.+..++|+.+...+...+ . ...+|+|+|.- +..| + ++.++
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~-~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQI---V-ENNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHH---H-HTCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHh---c-cCCCEEEECHHHHHHHHhcCcccccccc
Confidence 68999999998888888877764 78899999988643322222 1 24789999952 2333 3 56677
Q ss_pred cEEEEe
Q 012746 328 RLVCHF 333 (457)
Q Consensus 328 ~~Vi~~ 333 (457)
++||.-
T Consensus 138 ~~vViD 143 (696)
T 2ykg_A 138 TLMIFD 143 (696)
T ss_dssp SEEEEE
T ss_pred cEEEEe
Confidence 888753
No 500
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=46.68 E-value=9.6 Score=33.60 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 012746 52 SGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~ 70 (457)
.|.-+.+.+|.|+|||...
T Consensus 40 ~Gei~~l~G~NGsGKSTLl 58 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTL 58 (256)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4667889999999999643
Done!