BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012747
(457 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NYS|A Chain A, X-Ray Structure Of The K185a Mutant Of Wbpe (Wlbe) From
Pseudomonas Aeruginosa In Complex With Plp At 1.45
Angstrom Resolution
pdb|3NYT|A Chain A, X-Ray Crystal Structure Of The Wlbe (Wpbe)
Aminotransferase From Pseudomonas Aeruginosa, Mutation
K185a, In Complex With The Plp External Aldimine Adduct
With Udp-3-Amino-2-N-Acetyl-Glucuronic Acid, At 1.3
Angstrom Resolution
Length = 367
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Query: 389 KLNMFEEQVF--EDIAVEYRHSLKRVGIG 415
KL +FEE++ + +A EY SLK+VGIG
Sbjct: 241 KLEIFEEEIALRQKVAAEYDLSLKQVGIG 269
>pdb|3NU8|A Chain A, Wbpe, An Aminotransferase From Pseudomonas Aeruginosa
Involved In O- Antigen Assembly In Complex With The
Internal Aldimine
pdb|3NU8|B Chain B, Wbpe, An Aminotransferase From Pseudomonas Aeruginosa
Involved In O- Antigen Assembly In Complex With The
Internal Aldimine
Length = 359
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Query: 389 KLNMFEEQVF--EDIAVEYRHSLKRVGIG 415
KL +FEE++ + +A EY SLK+VGIG
Sbjct: 241 KLEIFEEEIALRQKVAAEYDLSLKQVGIG 269
>pdb|3NU7|A Chain A, Wbpe, An Aminotransferase From Pseudomonas Aeruginosa
Involved In O- Antigen Assembly In Complex With The
Cofactor Pmp
pdb|3NU7|B Chain B, Wbpe, An Aminotransferase From Pseudomonas Aeruginosa
Involved In O- Antigen Assembly In Complex With The
Cofactor Pmp
pdb|3NUB|A Chain A, Wbpe, An Aminotransferase From Pseudomonas Aeruginosa
Involved In O- Antigen Assembly In Complex With Product
As The External Aldimine
pdb|3NUB|B Chain B, Wbpe, An Aminotransferase From Pseudomonas Aeruginosa
Involved In O- Antigen Assembly In Complex With Product
As The External Aldimine
Length = 359
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Query: 389 KLNMFEEQVF--EDIAVEYRHSLKRVGIG 415
KL +FEE++ + +A EY SLK+VGIG
Sbjct: 241 KLEIFEEEIALRQKVAAEYDLSLKQVGIG 269
>pdb|3NYU|A Chain A, X-Ray Crystal Structure Of The Wbpe (Wlbe)
Aminotransferase From Pseudomonas Aeruginosa As The Plp
Internal Aldimine Adduct With Lysine 185
pdb|3NYU|B Chain B, X-Ray Crystal Structure Of The Wbpe (Wlbe)
Aminotransferase From Pseudomonas Aeruginosa As The Plp
Internal Aldimine Adduct With Lysine 185
pdb|3NYU|C Chain C, X-Ray Crystal Structure Of The Wbpe (Wlbe)
Aminotransferase From Pseudomonas Aeruginosa As The Plp
Internal Aldimine Adduct With Lysine 185
pdb|3NYU|D Chain D, X-Ray Crystal Structure Of The Wbpe (Wlbe)
Aminotransferase From Pseudomonas Aeruginosa As The Plp
Internal Aldimine Adduct With Lysine 185
Length = 367
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Query: 389 KLNMFEEQVF--EDIAVEYRHSLKRVGIG 415
KL +FEE++ + +A EY SLK+VGIG
Sbjct: 241 KLEIFEEEIALRQKVAAEYDLSLKQVGIG 269
>pdb|2DCH|X Chain X, Crystal Structure Of Archaeal Intron-Encoded Homing
Endonuclease I- Tsp061i
Length = 216
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 23/51 (45%), Gaps = 10/51 (19%)
Query: 213 KSNEFKI---------GAWRIVKVSSKNLYENPAMNGVIPKYLVHRLFPNS 254
KS E KI G W+I KV + LY NGVIP H L P S
Sbjct: 61 KSAEIKISSLFYDKGAGVWKI-KVKDERLYRYLVNNGVIPGKKAHVLRPPS 110
>pdb|2IXO|A Chain A, Crystal Structure Of The Pp2a Phosphatase Activator Ypa1
Ptpa1
pdb|2IXO|B Chain B, Crystal Structure Of The Pp2a Phosphatase Activator Ypa1
Ptpa1
Length = 323
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 53 QTPLFTYPHSYG-----EHKYALPARRXXXXXXVLFSDYKVVFKEIQDLCGNSSAFPPVL 107
+TP P YG E + L R +L S+Y V E+Q GNS L
Sbjct: 83 ETPPLPGPRRYGNLACREWHHKLDERLPQWLQEMLPSEYHEVVPELQYYLGNSFGSSTRL 142
Query: 108 KYMQGNADSFGGHFGTKKSIAYFDHQNNS 136
Y G+ SF + F H +
Sbjct: 143 DYGTGHELSFMATVAALDMLGMFPHHRGA 171
>pdb|2OBP|A Chain A, Crystal Structure Of A Putative Dna-Binding Protein
(Reut_b4095) From Ralstonia Eutropha Jmp134 At 1.70 A
Resolution
pdb|2OBP|B Chain B, Crystal Structure Of A Putative Dna-Binding Protein
(Reut_b4095) From Ralstonia Eutropha Jmp134 At 1.70 A
Resolution
Length = 96
Score = 28.5 bits (62), Expect = 8.6, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 312 VNALLMQMETYCENGLQPWSSNKLPYPSDVPDSAL 346
V LL+ E ENG PWS K+ + +P S L
Sbjct: 19 VEVLLVLREAGIENGATPWSLPKIAKRAQLPXSVL 53
>pdb|3MVP|A Chain A, The Crystal Structure Of A TetrACRR TRANSCRIPTIONAL
REGULAT Streptococcus Mutans To 1.85a
pdb|3MVP|B Chain B, The Crystal Structure Of A TetrACRR TRANSCRIPTIONAL
REGULAT Streptococcus Mutans To 1.85a
Length = 217
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 12/114 (10%)
Query: 307 KKWRDVNALLMQMETYCENGLQPWSSNKLPYPSDVPDSALILRKHG--LRSNLFSCLMFS 364
K+W +N L+ Q+ E+ + L Y +P + +L +H L++ + CL++
Sbjct: 107 KEW--LNVLINQL-LAAEDKIFHAQIEXLAYA--IPQAKALLEEHNNNLKNLTYKCLLYY 161
Query: 365 ELEAFNPRDQLAFAYVRDNMSPKLKLNMFEEQVFEDIAVEYRHSLKRVGIGAND 418
+A NP + V D +S + +E ++ + E H +K+ GI + D
Sbjct: 162 SDQAANPSFKTLSLVVFDFISA-----LVDELLYHEHTQEEAHQIKKTGIDSLD 210
>pdb|2IXP|A Chain A, Crystal Structure Of The Pp2a Phosphatase Activator Ypa1
Ptpa1 In Complex With Model Substrate
pdb|2IXP|B Chain B, Crystal Structure Of The Pp2a Phosphatase Activator Ypa1
Ptpa1 In Complex With Model Substrate
pdb|2IXP|C Chain C, Crystal Structure Of The Pp2a Phosphatase Activator Ypa1
Ptpa1 In Complex With Model Substrate
pdb|2IXP|D Chain D, Crystal Structure Of The Pp2a Phosphatase Activator Ypa1
Ptpa1 In Complex With Model Substrate
Length = 323
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 53 QTPLFTYPHSYG-----EHKYALPARRXXXXXXVLFSDYKVVFKEIQDLCGNSSAFPPVL 107
+TP P YG E + L R +L S+Y V E+Q GNS L
Sbjct: 83 ETPPLPGPRRYGNLACREWHHKLDERLPQWLQEMLPSEYHEVVPELQYYLGNSFGSSTRL 142
Query: 108 KYMQGNADSFGGHFGTKKSIAYFDHQNNS 136
Y G+ SF + F H +
Sbjct: 143 DYGTGHELSFMATVAALDMLGMFPHMRGA 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,791,310
Number of Sequences: 62578
Number of extensions: 555350
Number of successful extensions: 1012
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1011
Number of HSP's gapped (non-prelim): 9
length of query: 457
length of database: 14,973,337
effective HSP length: 102
effective length of query: 355
effective length of database: 8,590,381
effective search space: 3049585255
effective search space used: 3049585255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)