BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012747
         (457 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q02959|HOS3_YEAST Histone deacetylase HOS3 OS=Saccharomyces cerevisiae (strain ATCC
           204508 / S288c) GN=HOS3 PE=1 SV=1
          Length = 697

 Score = 35.4 bits (80), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 60/165 (36%), Gaps = 23/165 (13%)

Query: 23  LYLASTLFFALRNSLSPSQCG----FKDPPFDPIQTPLFTYPHSYGEH-KYALPA----- 72
           +YL+S    AL+ ++   + G    FK P  + I    F      G H  Y  P+     
Sbjct: 149 IYLSSKTIKALQGTIGAIETGVDSIFKGPSAEHISNRAFVAIRPPGHHCHYGTPSGFCLL 208

Query: 73  RRSSCSSSVLFSDYKVVFKEI-----------QDLCGNSSAFPPVLKYMQGNADSFGGHF 121
             +  +    +  Y V    +           QD+C   + F P  +    + D FG  F
Sbjct: 209 NNAHVAIEYAYDTYNVTHVVVLDFDLHHGDGTQDICWKRAGFKPEEEPEDSSYDDFGKKF 268

Query: 122 GTKKSIAYFD-HQNNSLDLPCGFFKKFPISDSDRTAMENCHGVVV 165
                + YF  H  NS     GF  K  I ++  T + N H + +
Sbjct: 269 AEFPKVGYFSMHDINSFPTESGFATKENIKNAS-TCIMNSHDLNI 312


>sp|Q3IF27|PLSB_PSEHT Glycerol-3-phosphate acyltransferase OS=Pseudoalteromonas
           haloplanktis (strain TAC 125) GN=plsB PE=3 SV=1
          Length = 812

 Score = 35.0 bits (79), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 315 LLMQMETYCENGLQPWSSNKLPYPSDVPDSALILRKHGLRSNLFSCLM--FSELEAFNPR 372
           LL Q++ Y         SNK+  P + P+  L    H L+ N F  +   F E+ A N +
Sbjct: 548 LLAQLDFYLRLQRDASYSNKVTAPEETPEQLL---THALKLNKFDVISDEFGEIIAINDK 604

Query: 373 DQLAFAYVRDNM 384
           ++  F Y R+N+
Sbjct: 605 EKTLFNYYRNNI 616


>sp|O77203|PIAA_DICDI Protein pianissimo A OS=Dictyostelium discoideum GN=piaA PE=1 SV=1
          Length = 1148

 Score = 33.5 bits (75), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 14/116 (12%)

Query: 32  ALRNSLSPSQCGFKDPPFDPIQTPLFTYPHSYGEHKYALPARRSSCSSSVLFSDYKVVFK 91
           A+  SLSPS   FK+ P     + ++  PH +GE    L      C      ++Y+   K
Sbjct: 885 AVSESLSPSVWRFKEAPDGSSTSGVYLPPHFFGE----LAKTEKGCQLIRKSNNYQRFLK 940

Query: 92  EIQDLCGNSSAFPPVLKYMQGNADSFG-GHFGTKKSIAYFDHQNNSLDLPCGFFKK 146
            IQD         P  K +   A     GH G+      F  +++++ L  G  +K
Sbjct: 941 IIQD---------PTAKQLDKRASLIAIGHIGSSVDGYSFVKESDTIKLLIGIAEK 987


>sp|Q8K9I3|UUP_BUCAP ABC transporter ATP-binding protein uup OS=Buchnera aphidicola
           subsp. Schizaphis graminum (strain Sg) GN=uup PE=3 SV=1
          Length = 592

 Score = 33.5 bits (75), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 8/66 (12%)

Query: 75  SSCSSSVLFSDYKVVFKEIQDLCGNSSAFPPVLKYMQGNADSFGG--HFGTKKSIAYFDH 132
            S SS + + D      +I  +  N S    ++K + G      G  HFGTK +IAYFD 
Sbjct: 305 QSFSSIIQYGD------KIGLIGNNGSGKSTMIKILMGEKKIQKGSIHFGTKLNIAYFDQ 358

Query: 133 QNNSLD 138
             ++LD
Sbjct: 359 DRSTLD 364


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.136    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,408,925
Number of Sequences: 539616
Number of extensions: 7164748
Number of successful extensions: 13955
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 13955
Number of HSP's gapped (non-prelim): 5
length of query: 457
length of database: 191,569,459
effective HSP length: 121
effective length of query: 336
effective length of database: 126,275,923
effective search space: 42428710128
effective search space used: 42428710128
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)