Query 012747
Match_columns 457
No_of_seqs 117 out of 132
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 05:53:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012747.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012747hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04765 DUF616: Protein of un 100.0 2E-111 4E-116 837.7 27.4 295 106-407 1-305 (305)
2 cd04194 GT8_A4GalT_like A4GalT 81.9 2 4.4E-05 41.0 4.5 94 189-290 30-130 (248)
3 PF01501 Glyco_transf_8: Glyco 79.9 2.5 5.4E-05 39.0 4.3 116 239-383 84-204 (250)
4 PF03407 Nucleotid_trans: Nucl 72.1 11 0.00023 35.3 6.3 103 253-398 66-172 (212)
5 cd00505 Glyco_transf_8 Members 65.3 9.1 0.0002 36.9 4.4 161 189-385 30-201 (246)
6 cd06429 GT8_like_1 GT8_like_1 46.1 34 0.00073 34.3 4.9 97 188-290 28-148 (257)
7 PF03452 Anp1: Anp1; InterPro 35.5 37 0.00079 34.8 3.3 46 245-293 134-179 (269)
8 PLN02718 Probable galacturonos 34.4 74 0.0016 36.1 5.7 97 188-290 341-452 (603)
9 cd06431 GT8_LARGE_C LARGE cata 30.6 46 0.001 33.6 3.1 99 188-290 29-135 (280)
10 PF05637 Glyco_transf_34: gala 28.8 40 0.00087 33.2 2.3 45 339-384 143-193 (239)
No 1
>PF04765 DUF616: Protein of unknown function (DUF616); InterPro: IPR006852 The entry represents a protein of unknown function. The function of is unknown although a number of the members are thought to be glycosyltransferases.
Probab=100.00 E-value=2.1e-111 Score=837.66 Aligned_cols=295 Identities=51% Similarity=0.842 Sum_probs=284.4
Q ss_pred ceeeecCC-------CCCCCCCCchhhhhhhhhcccCcccccccccc--CCCCCHhhHHHHhccCcEEEEEEeeCCCCcC
Q 012747 106 VLKYMQGN-------ADSFGGHFGTKKSIAYFDHQNNSLDLPCGFFK--KFPISDSDRTAMENCHGVVVVSAIFNNHDKI 176 (457)
Q Consensus 106 ~l~y~~~~-------~~~FgG~~s~~~R~~sf~~~~~~~~vhCGF~~--~F~i~~~d~~~m~~c~kvVVyTAIFG~YD~L 176 (457)
+|+|+.++ .++|||||||+||++||++ .++|+|||||++ ||||+|.|+.+|++|+ |||||||||+||+|
T Consensus 1 nl~y~~~~~~~~~~~~~~f~g~~s~~~R~~sf~~-~~~~~v~Cgf~~~~gf~i~~~d~~~m~~c~-vvV~saIFG~yD~l 78 (305)
T PF04765_consen 1 NLTYIEEENKPESGRGPSFGGNQSLEERESSFDI-QEDMTVHCGFVKNTGFDISESDRRYMEKCR-VVVYSAIFGNYDKL 78 (305)
T ss_pred CCcccccccccccCCCCCcCCcCCHHHHHHhcCC-CCCceeccccccCCCCCCCHHHHHHHhcCC-EEEEEEecCCCccc
Confidence 35666555 5999999999999999995 688999999999 9999999999999995 99999999999999
Q ss_pred CCCCCCCCCCCCceeEEEEeeccchhhhccccccccccCcccccceEEEEecCCCc-CCCcccccccceeeccccCCCCC
Q 012747 177 RQPRGLGSKTLETVCFFMFVDDTTLKGLEHHHLIYEKSNEFKIGAWRIVKVSSKNL-YENPAMNGVIPKYLVHRLFPNSK 255 (457)
Q Consensus 177 ~~P~~i~~~s~d~VCF~mFtDe~tl~~l~~~g~~~~~~~~~~~g~WrIV~V~~~nL-y~D~rrngRipKiLpHrLFPny~ 255 (457)
+||+++++.++++|||+||||+.|+++|+++|.++ ++++++|+||||+|+ ++ |.|+||+||+||+|||+|||||+
T Consensus 79 ~qP~~i~~~s~~~vcf~mF~D~~t~~~l~~~~~~~--~~~~~ig~WrIv~v~--~lp~~d~rr~~r~~K~lpHrlfp~y~ 154 (305)
T PF04765_consen 79 RQPKNISEYSKKNVCFFMFVDEETLKSLESEGHIP--DENKKIGIWRIVVVK--NLPYDDPRRNGRIPKLLPHRLFPNYD 154 (305)
T ss_pred cCchhhCHHHhcCccEEEEEehhhHHHHHhcCCcc--ccccccCceEEEEec--CCCCcchhhcCcccceeccccCCCCc
Confidence 99999999999999999999999999999999986 788899999999996 78 99999999999999999999999
Q ss_pred eEEEEeCceeEecCHHHHHHHHHhcCCCcEEEecCCCCCChHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCCCCCCC
Q 012747 256 FSIWVDAKLQLTADPLLLIHALVVSENVDMAISKHPFFIHTMEEAMATARWKKWRDVNALLMQMETYCENGLQPWSSNKL 335 (457)
Q Consensus 256 ySIWIDgkiqL~~DP~~lIe~~L~r~~~~~AiskHp~R~ciYEEA~ac~r~~Kydd~~~I~~Qm~~Yk~eGlp~~s~~kl 335 (457)
|||||||||+|++||++||+++||+++++|||++||.|+||||||+||++++|++ ++.|++||++|+++|||+|+++|+
T Consensus 155 ySIWID~ki~L~~Dp~~lie~~l~~~~~~~Ai~~H~~R~cvyeEa~a~~~~~k~~-~~~I~~Qm~~Y~~eGlp~~s~~k~ 233 (305)
T PF04765_consen 155 YSIWIDGKIQLIVDPLLLIERFLWRKNADIAISKHPERNCVYEEAEACKRLGKYD-PERIDEQMEFYKQEGLPPWSPAKL 233 (305)
T ss_pred eEEEEeeeEEEecCHHHHHHHHHhcCCCcEEEeCCCCcccHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCCccccccc
Confidence 9999999999999999999999999999999999999999999999999999965 699999999999999999999999
Q ss_pred CCCCCCCcccEEEeccCCcchhhHHHHHHHHhhCCCCCCchHHHHHHhhCCCcccccchhHHHHHHHHhhcc
Q 012747 336 PYPSDVPDSALILRKHGLRSNLFSCLMFSELEAFNPRDQLAFAYVRDNMSPKLKLNMFEEQVFEDIAVEYRH 407 (457)
Q Consensus 336 P~~sgLpE~~vIIR~Ht~~snlfmclWfnEv~rfs~RDQLSF~YVl~k~~~~~~lnmF~~~~~~~~~~~~rH 407 (457)
|+.+|||||+||||+|++++|+|||+|||||++||+||||||+||+||+++++++|||++|+|++++++|+|
T Consensus 234 ~l~s~v~E~~iIiR~H~~~~nlf~clWfnEv~rfs~RDQLSF~Yv~wk~~~~~~~~mf~~~~~~~~~~~~~h 305 (305)
T PF04765_consen 234 PLPSDVPEGNIIIRKHNPMSNLFMCLWFNEVERFSPRDQLSFPYVLWKLGPKFKLNMFKDCERRQLVVLYRH 305 (305)
T ss_pred ccccCCccceEEEecCCchhHHHHHHHHHHHhcCCCcccchHHHHHHHhCCcccchhhhHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
No 2
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=81.92 E-value=2 Score=41.04 Aligned_cols=94 Identities=15% Similarity=0.250 Sum_probs=58.1
Q ss_pred ceeEEEEeeccchhhhccc-cccccccCcccccceEEEEecCCCcCCCcc-ccccc-----ceeeccccCCCCCeEEEEe
Q 012747 189 TVCFFMFVDDTTLKGLEHH-HLIYEKSNEFKIGAWRIVKVSSKNLYENPA-MNGVI-----PKYLVHRLFPNSKFSIWVD 261 (457)
Q Consensus 189 ~VCF~mFtDe~tl~~l~~~-g~~~~~~~~~~~g~WrIV~V~~~nLy~D~r-rngRi-----pKiLpHrLFPny~ySIWID 261 (457)
.+.|++++|+.+...++.- ..+. . ....-+++.++... ..+.. ...++ .|++...+||+++--||||
T Consensus 30 ~~~~~il~~~is~~~~~~L~~~~~----~-~~~~i~~~~i~~~~-~~~~~~~~~~~~~~~y~rl~l~~ll~~~~rvlylD 103 (248)
T cd04194 30 DYDFYILNDDISEENKKKLKELLK----K-YNSSIEFIKIDNDD-FKFFPATTDHISYATYYRLLIPDLLPDYDKVLYLD 103 (248)
T ss_pred ceEEEEEeCCCCHHHHHHHHHHHH----h-cCCeEEEEEcCHHH-HhcCCcccccccHHHHHHHHHHHHhcccCEEEEEe
Confidence 5778889987554433321 1111 0 01223555554211 22211 22333 3788899999999999999
Q ss_pred CceeEecCHHHHHHHHHhcCCCcEEEecC
Q 012747 262 AKLQLTADPLLLIHALVVSENVDMAISKH 290 (457)
Q Consensus 262 gkiqL~~DP~~lIe~~L~r~~~~~AiskH 290 (457)
+-+.+.+|+..|.+.-+ ++..+|+..|
T Consensus 104 ~D~lv~~di~~L~~~~~--~~~~~aa~~d 130 (248)
T cd04194 104 ADIIVLGDLSELFDIDL--GDNLLAAVRD 130 (248)
T ss_pred CCEEecCCHHHHhcCCc--CCCEEEEEec
Confidence 99999999998876322 4677888776
No 3
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=79.85 E-value=2.5 Score=39.01 Aligned_cols=116 Identities=17% Similarity=0.142 Sum_probs=66.2
Q ss_pred ccccceeeccccCCCCCeEEEEeCceeEecCHHHHHHHHHhcCCCcEEEecCCCCCChHHHHHHHHHhhccCChHHHHHH
Q 012747 239 NGVIPKYLVHRLFPNSKFSIWVDAKLQLTADPLLLIHALVVSENVDMAISKHPFFIHTMEEAMATARWKKWRDVNALLMQ 318 (457)
Q Consensus 239 ngRipKiLpHrLFPny~ySIWIDgkiqL~~DP~~lIe~~L~r~~~~~AiskHp~R~ciYEEA~ac~r~~Kydd~~~I~~Q 318 (457)
..-+.|++.+.+||+++--||+|+-+.+++|+..+.+..+ ++..+|+... ++...... +.
T Consensus 84 ~~~~~rl~i~~ll~~~drilyLD~D~lv~~dl~~lf~~~~--~~~~~~a~~~-------~~~~~~~~-~~---------- 143 (250)
T PF01501_consen 84 PATFARLFIPDLLPDYDRILYLDADTLVLGDLDELFDLDL--QGKYLAAVED-------ESFDNFPN-KR---------- 143 (250)
T ss_dssp GGGGGGGGHHHHSTTSSEEEEE-TTEEESS-SHHHHC-----TTSSEEEEE-----------HHHHT-ST----------
T ss_pred HHHHHHhhhHHHHhhcCeEEEEcCCeeeecChhhhhcccc--hhhhcccccc-------chhhhhhh-cc----------
Confidence 3445789999999999999999999999999998886433 3666777666 11111111 10
Q ss_pred HHHHHHcCCCCCCCCCCCCCCCCCcccEEEeccCCcc-hhhHHHHHHHHhh----CCCCCCchHHHHHHh
Q 012747 319 METYCENGLQPWSSNKLPYPSDVPDSALILRKHGLRS-NLFSCLMFSELEA----FNPRDQLAFAYVRDN 383 (457)
Q Consensus 319 m~~Yk~eGlp~~s~~klP~~sgLpE~~vIIR~Ht~~s-nlfmclWfnEv~r----fs~RDQLSF~YVl~k 383 (457)
........+...+.+-+||++=+-.... +.+...+-+.++. ..-.||=-++++...
T Consensus 144 ---------~~~~~~~~~~~~~~fNsGv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DQ~~ln~~~~~ 204 (250)
T PF01501_consen 144 ---------FPFSERKQPGNKPYFNSGVMLFNPSKWRKENILQKLIEWLEQNGMKLGFPDQDILNIVFYG 204 (250)
T ss_dssp ---------TSSEEECESTTTTSEEEEEEEEEHHHHHHHHHHHHHHHHHHHTTTT-SSCHHHHHHHHHTT
T ss_pred ---------cchhhcccCcccccccCcEEEEeechhhhhhhhhhhhhhhhhcccccCcCchHHHhhhccc
Confidence 1111112233457788888884332222 2333333333333 345899999999873
No 4
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=72.06 E-value=11 Score=35.25 Aligned_cols=103 Identities=15% Similarity=0.188 Sum_probs=70.0
Q ss_pred CCCeEEEEeCceeEecCHHHHHHHHHhcCCCcEEEecCCCCCChHHHHHHHHHhhccCChHHHHHHHHHHHHcCCCCCCC
Q 012747 253 NSKFSIWVDAKLQLTADPLLLIHALVVSENVDMAISKHPFFIHTMEEAMATARWKKWRDVNALLMQMETYCENGLQPWSS 332 (457)
Q Consensus 253 ny~ySIWIDgkiqL~~DP~~lIe~~L~r~~~~~AiskHp~R~ciYEEA~ac~r~~Kydd~~~I~~Qm~~Yk~eGlp~~s~ 332 (457)
+++ -+++|+-+.+..||..+++ ..+.++.++.-...... .
T Consensus 66 G~~-vl~~D~Dvv~~~dp~~~~~----~~~~Di~~~~d~~~~~~--------------------------------~--- 105 (212)
T PF03407_consen 66 GYD-VLFSDADVVWLRDPLPYFE----NPDADILFSSDGWDGTN--------------------------------S--- 105 (212)
T ss_pred CCc-eEEecCCEEEecCcHHhhc----cCCCceEEecCCCcccc--------------------------------h---
Confidence 344 5789999999999998772 14677777663111000 0
Q ss_pred CCCCCCCCCCcccEEEeccCCcchhhHHHHHHHHhhCCC-CCCchHHHHHHhhC---CCcccccchhHHH
Q 012747 333 NKLPYPSDVPDSALILRKHGLRSNLFSCLMFSELEAFNP-RDQLAFAYVRDNMS---PKLKLNMFEEQVF 398 (457)
Q Consensus 333 ~klP~~sgLpE~~vIIR~Ht~~snlfmclWfnEv~rfs~-RDQLSF~YVl~k~~---~~~~lnmF~~~~~ 398 (457)
....+.+-++++.=+.++.+..|+..|-....+.+. .||-.|..++.... ..+++...+...|
T Consensus 106 ---~~~~~~~n~G~~~~r~t~~~~~~~~~w~~~~~~~~~~~DQ~~~n~~l~~~~~~~~~~~~~~L~~~~f 172 (212)
T PF03407_consen 106 ---DRNGNLVNTGFYYFRPTPRTIAFLEDWLERMAESPGCWDQQAFNELLREQAARYGGLRVRFLPPSLF 172 (212)
T ss_pred ---hhcCCccccceEEEecCHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHhcccCCcCcEEEEeCHHHe
Confidence 000122346777777799999999999999999955 79999999998875 3455555555444
No 5
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=65.29 E-value=9.1 Score=36.87 Aligned_cols=161 Identities=14% Similarity=0.075 Sum_probs=91.7
Q ss_pred ceeEEEEeeccchhhhccccccccccCcccccceEEEEecCCCc--CC---CcccccccceeeccccCCCCCeEEEEeCc
Q 012747 189 TVCFFMFVDDTTLKGLEHHHLIYEKSNEFKIGAWRIVKVSSKNL--YE---NPAMNGVIPKYLVHRLFPNSKFSIWVDAK 263 (457)
Q Consensus 189 ~VCF~mFtDe~tl~~l~~~g~~~~~~~~~~~g~WrIV~V~~~nL--y~---D~rrngRipKiLpHrLFPny~ySIWIDgk 263 (457)
.+.|++++|+.+....+.-..+. .. .....+++.++.... .. ......-+.|++..++||+++--||+|+-
T Consensus 30 ~~~~~il~~~is~~~~~~L~~~~---~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~y~RL~i~~llp~~~kvlYLD~D 105 (246)
T cd00505 30 PLRFHVLTNPLSDTFKAALDNLR---KL-YNFNYELIPVDILDSVDSEHLKRPIKIVTLTKLHLPNLVPDYDKILYVDAD 105 (246)
T ss_pred CeEEEEEEccccHHHHHHHHHHH---hc-cCceEEEEeccccCcchhhhhcCccccceeHHHHHHHHhhccCeEEEEcCC
Confidence 57788898875543222110100 00 012345555541111 11 23344557899999999999999999999
Q ss_pred eeEecCHHHHHHHHHhcCCCcEEEecCCCCCChHHHHHHHHHhhccCChHHHHHHHHHH-HHcCCCCCCCCCCCCCCCCC
Q 012747 264 LQLTADPLLLIHALVVSENVDMAISKHPFFIHTMEEAMATARWKKWRDVNALLMQMETY-CENGLQPWSSNKLPYPSDVP 342 (457)
Q Consensus 264 iqL~~DP~~lIe~~L~r~~~~~AiskHp~R~ciYEEA~ac~r~~Kydd~~~I~~Qm~~Y-k~eGlp~~s~~klP~~sgLp 342 (457)
+.+.+|+..|.+--+ ++..+|+..-..- ....+ .| +..|++. ....+
T Consensus 106 ~iv~~di~~L~~~~l--~~~~~aav~d~~~----------~~~~~------------~~~~~~~~~~--------~~~yf 153 (246)
T cd00505 106 ILVLTDIDELWDTPL--GGQELAAAPDPGD----------RREGK------------YYRQKRSHLA--------GPDYF 153 (246)
T ss_pred eeeccCHHHHhhccC--CCCeEEEccCchh----------hhccc------------hhhcccCCCC--------CCCce
Confidence 999999998887433 5677888754210 00001 01 1223221 22345
Q ss_pred cccEEEeccCC-----cchhhHHHHHHHHhhCCCCCCchHHHHHHhhC
Q 012747 343 DSALILRKHGL-----RSNLFSCLMFSELEAFNPRDQLAFAYVRDNMS 385 (457)
Q Consensus 343 E~~vIIR~Ht~-----~snlfmclWfnEv~rfs~RDQLSF~YVl~k~~ 385 (457)
-++|++=+-.. ........|.+...+..--||=.++.+....+
T Consensus 154 NsGVmlinl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~LN~~~~~~~ 201 (246)
T cd00505 154 NSGVFVVNLSKERRNQLLKVALEKWLQSLSSLSGGDQDLLNTFFKQVP 201 (246)
T ss_pred eeeeEEEechHHHHHHHHHHHHHHHHhhcccCccCCcHHHHHHHhcCC
Confidence 67888832222 22233344555556788899999999987653
No 6
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=46.12 E-value=34 Score=34.26 Aligned_cols=97 Identities=13% Similarity=0.235 Sum_probs=60.3
Q ss_pred CceeEEEEeeccchhhhccccccccccCcccccceEEEEecCCCcCCC----c---------------ccccc-----cc
Q 012747 188 ETVCFFMFVDDTTLKGLEHHHLIYEKSNEFKIGAWRIVKVSSKNLYEN----P---------------AMNGV-----IP 243 (457)
Q Consensus 188 d~VCF~mFtDe~tl~~l~~~g~~~~~~~~~~~g~WrIV~V~~~nLy~D----~---------------rrngR-----ip 243 (457)
..+.|.+|||..+.+.++.--.. .....-..+++.++...+... + .+... +.
T Consensus 28 ~~~~fhvvtd~~s~~~~~~~~~~----~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y~ 103 (257)
T cd06429 28 SNLVFHIVTDNQNYGAMRSWFDL----NPLKIATVKVLNFDDFKLLGKVKVDSLMQLESEADTSNLKQRKPEYISLLNFA 103 (257)
T ss_pred CceEEEEecCccCHHHHHHHHHh----cCCCCceEEEEEeCcHHhhcccccchhhhhhccccccccccCCccccCHHHHH
Confidence 46889999998887655541110 011123467777752211011 1 11111 44
Q ss_pred eeeccccCCCCCeEEEEeCceeEecCHHHHHHHHHhcCCCcEEEecC
Q 012747 244 KYLVHRLFPNSKFSIWVDAKLQLTADPLLLIHALVVSENVDMAISKH 290 (457)
Q Consensus 244 KiLpHrLFPny~ySIWIDgkiqL~~DP~~lIe~~L~r~~~~~AiskH 290 (457)
+++.-.+||+.+--||+|+-+.+.+|..+|.+. ..++..+|+...
T Consensus 104 Rl~ip~llp~~~kvlYLD~Dviv~~dl~eL~~~--dl~~~~~aav~d 148 (257)
T cd06429 104 RFYLPELFPKLEKVIYLDDDVVVQKDLTELWNT--DLGGGVAGAVET 148 (257)
T ss_pred HHHHHHHhhhhCeEEEEeCCEEEeCCHHHHhhC--CCCCCEEEEEhh
Confidence 566667899999999999999999999988874 334667777655
No 7
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=35.51 E-value=37 Score=34.77 Aligned_cols=46 Identities=24% Similarity=0.401 Sum_probs=36.7
Q ss_pred eeccccCCCCCeEEEEeCceeEecCHHHHHHHHHhcCCCcEEEecCCCC
Q 012747 245 YLVHRLFPNSKFSIWVDAKLQLTADPLLLIHALVVSENVDMAISKHPFF 293 (457)
Q Consensus 245 iLpHrLFPny~ySIWIDgkiqL~~DP~~lIe~~L~r~~~~~AiskHp~R 293 (457)
+|.|-|=|..++.+|+|+-|. .-|-.||+.++ ..+.+|-+++=..+
T Consensus 134 LL~~aL~p~~swVlWlDaDIv--~~P~~lI~dli-~~~kdIivPn~~~~ 179 (269)
T PF03452_consen 134 LLSSALGPWHSWVLWLDADIV--ETPPTLIQDLI-AHDKDIIVPNCWRR 179 (269)
T ss_pred HHHhhcCCcccEEEEEecCcc--cCChHHHHHHH-hCCCCEEccceeec
Confidence 566777789999999999887 78888999987 46888887765433
No 8
>PLN02718 Probable galacturonosyltransferase
Probab=34.35 E-value=74 Score=36.11 Aligned_cols=97 Identities=12% Similarity=0.203 Sum_probs=59.0
Q ss_pred CceeEEEEeeccchhhhccccccccccCcccccceEEEEecC-CCc---CCC-----cccccc------cceeeccccCC
Q 012747 188 ETVCFFMFVDDTTLKGLEHHHLIYEKSNEFKIGAWRIVKVSS-KNL---YEN-----PAMNGV------IPKYLVHRLFP 252 (457)
Q Consensus 188 d~VCF~mFtDe~tl~~l~~~g~~~~~~~~~~~g~WrIV~V~~-~nL---y~D-----~rrngR------ipKiLpHrLFP 252 (457)
..++|.+|||..+...++.--... ......+.|+.++. ..+ |.+ +.++.+ +.+++...+||
T Consensus 341 ~~ivFHVvTD~is~~~mk~wf~l~----~~~~a~I~V~~Iddf~~lp~~~~~~lk~l~s~~~~~~S~~~y~Rl~ipellp 416 (603)
T PLN02718 341 EKIVFHVVTDSLNYPAISMWFLLN----PPGKATIQILNIDDMNVLPADYNSLLMKQNSHDPRYISALNHARFYLPDIFP 416 (603)
T ss_pred CcEEEEEEeCCCCHHHHHHHHHhC----CCCCcEEEEEecchhccccccchhhhhhccccccccccHHHHHHHHHHHHhc
Confidence 369999999988877665311111 01134566666641 011 000 011112 22455567899
Q ss_pred CCCeEEEEeCceeEecCHHHHHHHHHhcCCCcEEEecC
Q 012747 253 NSKFSIWVDAKLQLTADPLLLIHALVVSENVDMAISKH 290 (457)
Q Consensus 253 ny~ySIWIDgkiqL~~DP~~lIe~~L~r~~~~~AiskH 290 (457)
+.+--||+|+-+.+.+|...|.+- ..++.-+|+...
T Consensus 417 ~l~KvLYLD~DvVV~~DL~eL~~i--Dl~~~v~aaVed 452 (603)
T PLN02718 417 GLNKIVLFDHDVVVQRDLSRLWSL--DMKGKVVGAVET 452 (603)
T ss_pred ccCEEEEEECCEEecCCHHHHhcC--CCCCcEEEEecc
Confidence 999999999999999999887763 234666777654
No 9
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=30.56 E-value=46 Score=33.61 Aligned_cols=99 Identities=11% Similarity=0.183 Sum_probs=58.9
Q ss_pred CceeEEEEeeccchhhhccccccccccCcccccceEEEEecC--CCc--CCCccccccc--ceeeccccCC-CCCeEEEE
Q 012747 188 ETVCFFMFVDDTTLKGLEHHHLIYEKSNEFKIGAWRIVKVSS--KNL--YENPAMNGVI--PKYLVHRLFP-NSKFSIWV 260 (457)
Q Consensus 188 d~VCF~mFtDe~tl~~l~~~g~~~~~~~~~~~g~WrIV~V~~--~nL--y~D~rrngRi--pKiLpHrLFP-ny~ySIWI 260 (457)
..+.|.+++|+.+.+.++.--..- ......+..+.++. +.+ .......+.+ .+++.+.+|| +++--||+
T Consensus 29 ~~~~fhii~d~~s~~~~~~l~~~~----~~~~~~i~f~~i~~~~~~~~~~~~~~~s~~y~y~RL~ip~llp~~~dkvLYL 104 (280)
T cd06431 29 NPLHFHLITDEIARRILATLFQTW----MVPAVEVSFYNAEELKSRVSWIPNKHYSGIYGLMKLVLTEALPSDLEKVIVL 104 (280)
T ss_pred CCEEEEEEECCcCHHHHHHHHHhc----cccCcEEEEEEhHHhhhhhccCcccchhhHHHHHHHHHHHhchhhcCEEEEE
Confidence 458999999977655433311100 01123455555531 111 0111222211 4788999999 69999999
Q ss_pred eCceeEecCHHHHHHHHH-hcCCCcEEEecC
Q 012747 261 DAKLQLTADPLLLIHALV-VSENVDMAISKH 290 (457)
Q Consensus 261 DgkiqL~~DP~~lIe~~L-~r~~~~~AiskH 290 (457)
|+-+.+.+|+.+|.+-+. ..++.-+|+..+
T Consensus 105 D~Diiv~~di~eL~~~~~~~~~~~~~a~v~~ 135 (280)
T cd06431 105 DTDITFATDIAELWKIFHKFTGQQVLGLVEN 135 (280)
T ss_pred cCCEEEcCCHHHHHHHhhhcCCCcEEEEecc
Confidence 999999999998887542 223445666654
No 10
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=28.84 E-value=40 Score=33.21 Aligned_cols=45 Identities=13% Similarity=0.012 Sum_probs=0.0
Q ss_pred CCCCcccEEEeccCCcchhhHHHHHHHHhhCC------CCCCchHHHHHHhh
Q 012747 339 SDVPDSALILRKHGLRSNLFSCLMFSELEAFN------PRDQLAFAYVRDNM 384 (457)
Q Consensus 339 sgLpE~~vIIR~Ht~~snlfmclWfnEv~rfs------~RDQLSF~YVl~k~ 384 (457)
.||=-|.+|||.+ +-+..|.+.|+...-+.. ..||=+|.+.+...
T Consensus 143 ~gLNtGsFliRns-~ws~~fLd~w~~~~~~~~~~~~~~~~EQsAl~~ll~~~ 193 (239)
T PF05637_consen 143 NGLNTGSFLIRNS-PWSRDFLDAWADPLYRNYDWDQLEFDEQSALEHLLQWH 193 (239)
T ss_dssp ----------------------------------------------------
T ss_pred ccccccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence 4666678888885 545677899987665433 35688888887443
Done!