Query 012747
Match_columns 457
No_of_seqs 117 out of 132
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 15:27:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012747.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012747hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tzt_A Glycosyl transferase fa 77.8 2.5 8.4E-05 40.5 5.1 95 188-291 34-136 (276)
2 1g9r_A Glycosyl transferase; a 71.5 7.2 0.00025 37.5 6.7 47 242-290 84-130 (311)
3 3u2u_A Glycogenin-1, GN-1, GN1 19.3 1E+02 0.0034 29.5 4.4 39 236-275 79-117 (263)
4 1o7q_A N-acetyllactosaminide a 17.3 24 0.00082 35.1 -0.5 113 147-271 34-156 (289)
5 4ayl_A BOGT-metal-independent 17.2 25 0.00085 34.2 -0.4 67 190-271 36-105 (246)
6 2lxi_A RNA-binding protein 10; 8.0 2.9E+02 0.0099 21.1 3.2 53 143-205 5-62 (91)
7 2ope_A PILX; type IV pilin, mi 7.8 1.5E+02 0.005 26.3 1.5 11 253-263 85-95 (128)
8 3ioh_A Histo-blood group ABO s 7.6 74 0.0025 31.8 -0.5 110 147-271 44-165 (298)
9 1ll2_A Glycogenin-1; protein-s 6.6 1.4E+02 0.0047 29.3 0.8 34 241-275 83-116 (333)
10 2hg7_A Phage-like element PBSX 6.3 5.5E+02 0.019 21.9 4.2 23 355-377 42-67 (110)
No 1
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=77.77 E-value=2.5 Score=40.45 Aligned_cols=95 Identities=11% Similarity=0.182 Sum_probs=56.0
Q ss_pred CceeEEEEeeccchhhhcc-ccccccccCcccccceEEEEecCC-CcCCCcccccc-----cceeeccccCC-CCCeEEE
Q 012747 188 ETVCFFMFVDDTTLKGLEH-HHLIYEKSNEFKIGAWRIVKVSSK-NLYENPAMNGV-----IPKYLVHRLFP-NSKFSIW 259 (457)
Q Consensus 188 d~VCF~mFtDe~tl~~l~~-~g~~~~~~~~~~~g~WrIV~V~~~-nLy~D~rrngR-----ipKiLpHrLFP-ny~ySIW 259 (457)
..++|++++|+.+.+..+. ...+. ..| .+|..+... +.+.+...+.+ +.|++...+|| +++--||
T Consensus 34 ~~~~~~il~~~is~~~~~~L~~~~~------~~~-~~i~~~~~~~~~~~~~~~~~~~s~~~~~rl~~~~l~p~~~~kvly 106 (276)
T 3tzt_A 34 RIFDVYLIHSRISEDKLKDLGEDLK------KFS-YTLYPIRATDDLFSFAKVTDRYPKEMYYRLLAGEFLPENLGEILY 106 (276)
T ss_dssp CCEEEEEEESCCCHHHHHHHHHHHH------TTT-CEEEEEECC-------------CHHHHHHHTHHHHSCTTCCEEEE
T ss_pred CceEEEEEeCCCCHHHHHHHHHHHH------HcC-CEEEEEEeCHHHHhcCccccccCHHHHHHHHHHHHcccccCeEEE
Confidence 4688888999766543321 01111 011 344444311 11222111223 56788889999 6999999
Q ss_pred EeCceeEecCHHHHHHHHHhcCCCcEEEecCC
Q 012747 260 VDAKLQLTADPLLLIHALVVSENVDMAISKHP 291 (457)
Q Consensus 260 IDgkiqL~~DP~~lIe~~L~r~~~~~AiskHp 291 (457)
+|+-+.+++|+..|.+. ..++..+|+..+.
T Consensus 107 lD~D~iv~~di~~L~~~--dl~~~~~aav~d~ 136 (276)
T 3tzt_A 107 LDPDMLVINPLDDLLRT--DISDYILAAASHT 136 (276)
T ss_dssp ECSSEEECSCSHHHHTC--CCTTSSEEEEEC-
T ss_pred EeCCeeecCCHHHHhhc--CCCCCeEEEEEec
Confidence 99999999999988763 3346779998763
No 2
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=71.49 E-value=7.2 Score=37.48 Aligned_cols=47 Identities=6% Similarity=0.039 Sum_probs=37.7
Q ss_pred cceeeccccCCCCCeEEEEeCceeEecCHHHHHHHHHhcCCCcEEEecC
Q 012747 242 IPKYLVHRLFPNSKFSIWVDAKLQLTADPLLLIHALVVSENVDMAISKH 290 (457)
Q Consensus 242 ipKiLpHrLFPny~ySIWIDgkiqL~~DP~~lIe~~L~r~~~~~AiskH 290 (457)
+.|++...+||+++-.||||+-+.+.+|+..|.+. ..++..+|+..+
T Consensus 84 y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~--~l~~~~~aav~d 130 (311)
T 1g9r_A 84 YARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDT--DLGDNWLGASID 130 (311)
T ss_dssp GGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTC--CCTTCSEEEEEC
T ss_pred HHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhcc--CCCCcEEEEEec
Confidence 55777778889999999999999999999887763 234667887664
No 3
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=19.29 E-value=1e+02 Score=29.52 Aligned_cols=39 Identities=18% Similarity=0.182 Sum_probs=30.9
Q ss_pred cccccccceeeccccCCCCCeEEEEeCceeEecCHHHHHH
Q 012747 236 PAMNGVIPKYLVHRLFPNSKFSIWVDAKLQLTADPLLLIH 275 (457)
Q Consensus 236 ~rrngRipKiLpHrLFPny~ySIWIDgkiqL~~DP~~lIe 275 (457)
++...-+.|++.-++. +|+--||+|+-+.+..|+..|.+
T Consensus 79 p~~~~~~~kl~~~~l~-~~~~vlylD~D~~v~~~~~~Lf~ 117 (263)
T 3u2u_A 79 PELGVTLTKLHCWSLT-QYSKCVFMDADTLVLANIDDLFD 117 (263)
T ss_dssp TTGGGGGGGGGGGGCT-TCSEEEEECTTEEECSCCGGGGG
T ss_pred cchhHHhHHHHhcccc-CcceEEEEcCCEeeccCHHHHhC
Confidence 3334567899999875 69999999999999999866543
No 4
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=17.27 E-value=24 Score=35.12 Aligned_cols=113 Identities=11% Similarity=0.077 Sum_probs=62.6
Q ss_pred CCCCHhhHHHHhccCcEEEEEEeeCCCC-cCCCCC-------CCCCCCCCceeEEEEeeccchhhhccccccccccCccc
Q 012747 147 FPISDSDRTAMENCHGVVVVSAIFNNHD-KIRQPR-------GLGSKTLETVCFFMFVDDTTLKGLEHHHLIYEKSNEFK 218 (457)
Q Consensus 147 F~i~~~d~~~m~~c~kvVVyTAIFG~YD-~L~~P~-------~i~~~s~d~VCF~mFtDe~tl~~l~~~g~~~~~~~~~~ 218 (457)
|+.+=-+..+-.+.-+|.+.---+|.|- ...+.- .+-. -.|-|++|||+... +|...-+ .
T Consensus 34 f~~~~l~~~~~~~n~tIGl~vfa~GkY~~~fl~~Fl~SAEk~Fm~g---~~v~YYVFTD~~~~--------~p~v~l~-~ 101 (289)
T 1o7q_A 34 YNRAVLDNYYAKQKITVGLTVFAVGRYIEHYLEEFLTSANKHFMVG---HPVIFYIMVDDVSR--------MPLIELG-P 101 (289)
T ss_dssp BCHHHHHHHHHHHTCCEEEEEEECTTHHHHHHHHHHHHHHHHBSTT---SCEEEEEEESCGGG--------CCCCCCC-T
T ss_pred CCHHHHHHHHHhhCCeEEEEEEEecccHHHHHHHHHHHHHHhccCC---CeEEEEEEeCChhh--------CCccccC-C
Confidence 5555555555555556766666678885 211110 1211 25789999998752 1110000 0
Q ss_pred ccceEEEEecCCCcCC--CcccccccceeeccccCCCCCeEEEEeCceeEecCHH
Q 012747 219 IGAWRIVKVSSKNLYE--NPAMNGVIPKYLVHRLFPNSKFSIWVDAKLQLTADPL 271 (457)
Q Consensus 219 ~g~WrIV~V~~~nLy~--D~rrngRipKiLpHrLFPny~ySIWIDgkiqL~~DP~ 271 (457)
.-.=+|+.|..+.... ..+|..-+-+...-+++-++||-+.+|+++.+..+..
T Consensus 102 ~r~~~V~~i~~~~~W~d~sm~Rm~~i~~~~~~~~~~evDYLf~~dvd~~F~~~vG 156 (289)
T 1o7q_A 102 LRSFKVFKIKPEKRWQDISMMRMKTIGEHIVAHIQHEVDFLFCMDVDQVFQDKFG 156 (289)
T ss_dssp TEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHTHHHHCSEEEEECSSEEECSCBC
T ss_pred CCeEEEEEeccccCCchhHHHHHHHHHHHHHHHHhhcCCEEEEeeCCcEeeccCC
Confidence 0112445554322222 3344444444444567899999999999999988764
No 5
>4ayl_A BOGT-metal-independent glycosyltransferase; histo-blood group enzyme; HET: EPE; 1.92A {Bacteroides ovatus} PDB: 4ayj_A*
Probab=17.18 E-value=25 Score=34.24 Aligned_cols=67 Identities=18% Similarity=0.299 Sum_probs=42.1
Q ss_pred eeEEEEeeccchhhhccccccccccCcccccceEEEEecCCCc-CCCc--ccccccceeeccccCCCCCeEEEEeCceeE
Q 012747 190 VCFFMFVDDTTLKGLEHHHLIYEKSNEFKIGAWRIVKVSSKNL-YENP--AMNGVIPKYLVHRLFPNSKFSIWVDAKLQL 266 (457)
Q Consensus 190 VCF~mFtDe~tl~~l~~~g~~~~~~~~~~~g~WrIV~V~~~nL-y~D~--rrngRipKiLpHrLFPny~ySIWIDgkiqL 266 (457)
|=|++|||+... +|. ++.++++++..+.. ..|. +|..-+-+. -.++--++||-+-.|+++.+
T Consensus 36 V~yYVFTD~~~~--------vp~------~~~~~v~~~~~~~~~Wqd~sm~Rm~~i~~~-~~~~~~evDyLf~~dvd~~F 100 (246)
T 4ayl_A 36 IEYYVFTDSPKL--------YDE------ENNKHIHRIKQKNLGWPDNTLKRFHIFLRI-KEQLERETDYLFFFNANLLF 100 (246)
T ss_dssp EEEEEEESCSCC--------TTT------TTCTTEEEEECCCCCTTHHHHTHHHHHHTT-HHHHHHHCSEEEEECTTEEE
T ss_pred eEEEEEeCChhh--------CCc------CCCceEEEEeCCcCCCcccchHHHHHHHHH-HHHHHhhCCEEEEEeCCcee
Confidence 678999998763 221 22334444432333 4433 444444443 45667779999999999999
Q ss_pred ecCHH
Q 012747 267 TADPL 271 (457)
Q Consensus 267 ~~DP~ 271 (457)
..+..
T Consensus 101 ~~~vG 105 (246)
T 4ayl_A 101 TSPIG 105 (246)
T ss_dssp CSCBC
T ss_pred eccCC
Confidence 88765
No 6
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=8.00 E-value=2.9e+02 Score=21.14 Aligned_cols=53 Identities=13% Similarity=0.179 Sum_probs=29.6
Q ss_pred cccC--CCCCHhhHHHH-hccCcEEEEEEeeC-CCCcCCCCCCCCCCCCCceeEEEEeeccch-hhhc
Q 012747 143 FFKK--FPISDSDRTAM-ENCHGVVVVSAIFN-NHDKIRQPRGLGSKTLETVCFFMFVDDTTL-KGLE 205 (457)
Q Consensus 143 F~~~--F~i~~~d~~~m-~~c~kvVVyTAIFG-~YD~L~~P~~i~~~s~d~VCF~mFtDe~tl-~~l~ 205 (457)
|++| ++++|+|+..+ +++ | .-..++-+..-.......+||+-|.+.+.. ++++
T Consensus 5 ~v~nLp~~~te~~l~~~F~~~----------G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~ 62 (91)
T 2lxi_A 5 MLRMLPQAATEDDIRGQLQSH----------GVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWME 62 (91)
T ss_dssp EEETCCSSCCHHHHHHHHHHH----------TCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHHh----------CCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 5666 68899988765 433 3 222333333211123467899999885443 3443
No 7
>2ope_A PILX; type IV pilin, minor pilin, bacterial pathogenesis, adhesion, aggregation, filament, cell adhesion; 2.40A {Neisseria meningitidis} PDB: 2opd_A
Probab=7.81 E-value=1.5e+02 Score=26.32 Aligned_cols=11 Identities=18% Similarity=0.706 Sum_probs=9.7
Q ss_pred CCCeEEEEeCc
Q 012747 253 NSKFSIWVDAK 263 (457)
Q Consensus 253 ny~ySIWIDgk 263 (457)
.|.||+|+|+.
T Consensus 85 gYtlsvwmdS~ 95 (128)
T 2ope_A 85 GYTLSVWMNSV 95 (128)
T ss_dssp SCCCEEEEETT
T ss_pred CeeEEEEEccC
Confidence 69999999984
No 8
>3ioh_A Histo-blood group ABO system transferase; GTA, cisab mutant, AA(Gly)B, rossman fold, unliganded, conformation, blood group antigen, glycoprotein; HET: GOL; 1.25A {Homo sapiens} SCOP: c.68.1.9 PDB: 3ioi_A* 3ioj_A* 3u0y_A* 3u0x_A* 1zhj_A* 2o1h_A* 2o1g_A* 3sx5_A* 3sx3_A* 2o1f_A 2rj6_A* 2rj5_A* 2rj7_A* 1zi4_A* 2y7a_A* 3sxb_A* 3sxa_A* 2riz_A 2rj0_A* 2rj1_A* ...
Probab=7.60 E-value=74 Score=31.77 Aligned_cols=110 Identities=9% Similarity=0.092 Sum_probs=61.4
Q ss_pred CCCCHhhHHHHhccCcEEEEEEeeCCCCcCCCCC-------CCCCCCCCceeEEEEeeccchhhhccccccccccCcccc
Q 012747 147 FPISDSDRTAMENCHGVVVVSAIFNNHDKIRQPR-------GLGSKTLETVCFFMFVDDTTLKGLEHHHLIYEKSNEFKI 219 (457)
Q Consensus 147 F~i~~~d~~~m~~c~kvVVyTAIFG~YD~L~~P~-------~i~~~s~d~VCF~mFtDe~tl~~l~~~g~~~~~~~~~~~ 219 (457)
|+.+--+..+-.+--+|.+...-+|.|-...+.- .+- + -.|=|++|||+... +|.... .
T Consensus 44 f~~~il~~~y~~~n~tIGl~vfA~GkY~~fl~~Fl~SAek~Fm~--g-~~V~YYVFTD~~~~--------vP~v~l---~ 109 (298)
T 3ioh_A 44 FNIDILNEQFRLQNTTIGLTVFAIKKYVAFLKLFLETAEKHFMV--G-HRVHYYVFTDQPAA--------VPRVTL---G 109 (298)
T ss_dssp CCHHHHHHHHHHTTCEEEEEEEECGGGGGGHHHHHHHHHHHBST--T-SEEEEEEEESCGGG--------SCCCCC---C
T ss_pred CCHHHHHHHHHHhCCcEEEEEEEeCcHHHHHHHHHHhHHHhccC--C-ceEEEEEEeCChhh--------CCcccc---C
Confidence 5555555555555546666666668875433221 221 1 24778999998653 121110 1
Q ss_pred cceEEEE--ecCCCc-CC--CcccccccceeeccccCCCCCeEEEEeCceeEecCHH
Q 012747 220 GAWRIVK--VSSKNL-YE--NPAMNGVIPKYLVHRLFPNSKFSIWVDAKLQLTADPL 271 (457)
Q Consensus 220 g~WrIV~--V~~~nL-y~--D~rrngRipKiLpHrLFPny~ySIWIDgkiqL~~DP~ 271 (457)
...++++ |. +.. .. ..+|..-+-+...-+++-++||-+-.|+++.+..+..
T Consensus 110 ~~r~~~V~~v~-~~~~Wqd~sm~Rm~~i~~~~~~~~~~EvDyLfc~dvd~~F~~~vG 165 (298)
T 3ioh_A 110 TGRQLSVLEVR-AYKRWQDVSMRRMEMISDFCERRFLSEVDYLVCVDVDMEFRDHVG 165 (298)
T ss_dssp TTEEEEEEECC-CCSSHHHHHHHHHHHHHHHHHHTHHHHCSEEEEEESSEEECSCBC
T ss_pred CCCeEEEEEec-cccCCccccHHHHHHHHHHHHHHHhhcCCEEEEecCCCeeccCcc
Confidence 1234333 43 122 22 3334333333334467999999999999999988764
No 9
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=6.58 E-value=1.4e+02 Score=29.28 Aligned_cols=34 Identities=18% Similarity=0.158 Sum_probs=28.7
Q ss_pred ccceeeccccCCCCCeEEEEeCceeEecCHHHHHH
Q 012747 241 VIPKYLVHRLFPNSKFSIWVDAKLQLTADPLLLIH 275 (457)
Q Consensus 241 RipKiLpHrLFPny~ySIWIDgkiqL~~DP~~lIe 275 (457)
-+.|++...| ++|+-.||||+-+.++.|+..|.+
T Consensus 83 t~~Kl~i~~l-~~ydrvlYLDaD~lv~~di~eLf~ 116 (333)
T 1ll2_A 83 TLTKLHCWSL-TQYSKCVFMDADTLVLANIDDLFE 116 (333)
T ss_dssp HHHHGGGGGC-TTCSEEEEECTTEEECSCCGGGGG
T ss_pred HHHHHHHhHh-cCCCeEEEEeCCEEeccCHHHHhC
Confidence 4677888875 999999999999999999876554
No 10
>2hg7_A Phage-like element PBSX protein XKDW; dimer, GFT structural genomics, PSI, protein structure initiative; NMR {Bacillus subtilis} SCOP: d.186.2.1
Probab=6.29 E-value=5.5e+02 Score=21.92 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=11.9
Q ss_pred chhhHHHHHHHHhh---CCCCCCchH
Q 012747 355 SNLFSCLMFSELEA---FNPRDQLAF 377 (457)
Q Consensus 355 snlfmclWfnEv~r---fs~RDQLSF 377 (457)
+..=...||+|+.. |.+-|||++
T Consensus 42 T~~eL~~wwee~q~np~yepP~q~~~ 67 (110)
T 2hg7_A 42 TQAELETWWEELQKNPPYEPPDQVEL 67 (110)
T ss_dssp CHHHHHHHHHHHHHSCCCC-------
T ss_pred CHHHHHHHHHHHHhCCCCCCchHHHH
Confidence 44456899999987 555788875
Done!