Query 012747
Match_columns 457
No_of_seqs 117 out of 132
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 15:27:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012747.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012747hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ga8a_ c.68.1.4 (A:) Galactos 76.3 1.1 8.4E-05 39.6 4.6 108 242-382 84-197 (282)
2 d1lzia_ c.68.1.9 (A:) Glycosyl 28.4 15 0.0011 34.1 3.0 124 147-292 38-173 (283)
3 d1xjha_ g.81.1.1 (A:) HSP33, C 20.1 12 0.0009 26.7 0.4 36 122-158 22-58 (62)
4 d1o7qa_ c.68.1.9 (A:) alpha-1, 15.5 13 0.00092 34.7 -0.6 113 147-271 32-154 (287)
5 d1x0fa1 d.58.7.1 (A:183-257) N 13.2 47 0.0035 23.6 2.2 49 147-205 9-59 (75)
6 d1wg5a_ d.58.7.1 (A:) Heteroge 11.7 1.4E+02 0.01 21.8 4.8 51 143-202 19-71 (104)
7 d1vzya2 g.81.1.1 (A:234-290) H 11.2 29 0.0021 24.2 0.4 35 123-158 18-53 (57)
8 d1hd0a_ d.58.7.1 (A:) Heteroge 10.7 68 0.005 22.3 2.4 49 143-201 3-54 (75)
9 d1vq0a2 g.81.1.1 (A:231-287) H 10.4 44 0.0032 23.3 1.2 35 122-158 16-51 (57)
10 d1ll2a_ c.68.1.14 (A:) Glycoge 10.4 36 0.0026 29.0 0.8 33 242-275 84-116 (263)
No 1
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]}
Probab=76.25 E-value=1.1 Score=39.55 Aligned_cols=108 Identities=8% Similarity=0.006 Sum_probs=68.5
Q ss_pred cceeeccccCCCCCeEEEEeCceeEecCHHHHHHHHHhcCCCcEEEecCCCCCChHHHHHHHHHhhccCChHHHHHHHHH
Q 012747 242 IPKYLVHRLFPNSKFSIWVDAKLQLTADPLLLIHALVVSENVDMAISKHPFFIHTMEEAMATARWKKWRDVNALLMQMET 321 (457)
Q Consensus 242 ipKiLpHrLFPny~ySIWIDgkiqL~~DP~~lIe~~L~r~~~~~AiskHp~R~ciYEEA~ac~r~~Kydd~~~I~~Qm~~ 321 (457)
+.|++.+.+||+++-.||||+=+.+..|+..|.+. ..++..+|+..+... ... -..
T Consensus 84 y~Rl~l~~~lp~~~kiiyLD~D~iv~~dl~~L~~~--~~~~~~~aa~~d~~~------------~~~----------~~~ 139 (282)
T d1ga8a_ 84 YARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDT--DLGDNWLGASIDLFV------------ERQ----------EGY 139 (282)
T ss_dssp GGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTC--CCTTCSEEEEECHHH------------HTS----------TTH
T ss_pred HHHHHHhhhCCccceEEEecCCEEEecchHHHHhc--ccccceeeeehhhhh------------hhh----------hhh
Confidence 35677888899999999999999999999887763 235677888765210 001 112
Q ss_pred HHHcCCCCCCCCCCCCCCCCCcccEEEeccC-----CcchhhHHHHHHHH-hhCCCCCCchHHHHHH
Q 012747 322 YCENGLQPWSSNKLPYPSDVPDSALILRKHG-----LRSNLFSCLMFSEL-EAFNPRDQLAFAYVRD 382 (457)
Q Consensus 322 Yk~eGlp~~s~~klP~~sgLpE~~vIIR~Ht-----~~snlfmclWfnEv-~rfs~RDQLSF~YVl~ 382 (457)
....|+++ ....+-+||++-... .....+++ |.++. ....--||=.++.+..
T Consensus 140 ~~~~~~~~--------~~~yfNsGVml~n~~~~r~~~~~~~~~~-~~~~~~~~~~~~DQd~LN~~f~ 197 (282)
T d1ga8a_ 140 KQKIGMAD--------GEYYFNAGVLLINLKKWRRHDIFKMSSE-WVEQYKDVMQYQDQDILNGLFK 197 (282)
T ss_dssp HHHTTCCT--------TSCCEEEEEEEECHHHHTTSCHHHHHHH-HHHHHTTTCSSTHHHHHHHHHT
T ss_pred HHHhCCCC--------CCceeecceeeechhhhhhhhHHHHHHH-HHHhcccCcccCchhHHHHHhc
Confidence 23445543 235577888885321 23344443 34444 3345589999998764
No 2
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.44 E-value=15 Score=34.09 Aligned_cols=124 Identities=10% Similarity=0.128 Sum_probs=61.5
Q ss_pred CCCCHhhHHHHhccCcEEEEEEeeCCCCcCCCCC-------CCCCCCCCceeEEEEeeccchhhhccccccccccCcccc
Q 012747 147 FPISDSDRTAMENCHGVVVVSAIFNNHDKIRQPR-------GLGSKTLETVCFFMFVDDTTLKGLEHHHLIYEKSNEFKI 219 (457)
Q Consensus 147 F~i~~~d~~~m~~c~kvVVyTAIFG~YD~L~~P~-------~i~~~s~d~VCF~mFtDe~tl~~l~~~g~~~~~~~~~~~ 219 (457)
|+.+=-+..+-.+-=.|.|..--+|.|-...+.- .+- + -.+=|++|||+... +|.... .
T Consensus 38 ~~~~~l~~~~~~~~~tIgl~vfATGkY~~Fl~~f~eSaek~Fmp--g-~~v~yyvFTD~~~~--------vP~i~l---~ 103 (283)
T d1lzia_ 38 FNIDILNEQFRLQNTTIGLTVFAIKKYVAFLKLFLETAEKHFMV--G-HRVHYYVFTDQPAA--------VPRVTL---G 103 (283)
T ss_dssp CCHHHHHHHHHTTTCEEEEEEEECGGGGGGHHHHHHHHHHHBST--T-SEEEEEEEESCGGG--------SCCCCC---C
T ss_pred CCHHHHHHHHhhCCceEEEEEEEeChHHHHHHHHHHHHHHhcCC--C-CeeEEEEEECCCcc--------CCcccc---c
Confidence 5554455555554435555555568886543221 221 2 24678999997542 121100 0
Q ss_pred cceEE--EEecCCCc-CCCc--ccccccceeeccccCCCCCeEEEEeCceeEecCHHHHHHHHHhcCCCcEEEecCCC
Q 012747 220 GAWRI--VKVSSKNL-YENP--AMNGVIPKYLVHRLFPNSKFSIWVDAKLQLTADPLLLIHALVVSENVDMAISKHPF 292 (457)
Q Consensus 220 g~WrI--V~V~~~nL-y~D~--rrngRipKiLpHrLFPny~ySIWIDgkiqL~~DP~~lIe~~L~r~~~~~AiskHp~ 292 (457)
..-++ +.|. +.. ..+. .|..-+-|...-+++-++||-+++|+++.++..... | .| .++-.-.||.
T Consensus 104 ~~~~v~v~~i~-~~~~Wp~iTL~R~~~i~k~i~~~~~~e~DyLf~~DaDm~f~~~vg~--E-~L----~~lvgv~HP~ 173 (283)
T d1lzia_ 104 TGRQLSVLEVR-AYKRWQDVSMRRMEMISDFCERRFLSEVDYLVCVDVDMEFRDHVGV--E-IL----TPLFGTLHPG 173 (283)
T ss_dssp TTEEEEEEECC--------------------CHHHHHHHCSEEEEECSSEEECSCBCG--G-GC----SSEEEEBCTT
T ss_pred cCCceEEEecc-CCCCCchHHHHHHHHHHHHHHHHhhhcCCEEEEeecceEEeccccc--E-Ee----cCeeeEeccc
Confidence 11233 3333 222 3333 444444444455678999999999999999776542 2 22 3455677873
No 3
>d1xjha_ g.81.1.1 (A:) HSP33, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.11 E-value=12 Score=26.70 Aligned_cols=36 Identities=8% Similarity=0.337 Sum_probs=28.8
Q ss_pred chhhhhhhhhcccCccccccccccC-CCCCHhhHHHHh
Q 012747 122 GTKKSIAYFDHQNNSLDLPCGFFKK-FPISDSDRTAME 158 (457)
Q Consensus 122 s~~~R~~sf~~~~~~~~vhCGF~~~-F~i~~~d~~~m~ 158 (457)
+.+|.++-++ .++..+|+|.|-+. +.+++.|...+-
T Consensus 22 ~~~El~~~~~-e~g~iev~C~fC~~~Y~f~~~dl~~l~ 58 (62)
T d1xjha_ 22 PDEEVDSILA-EDGEIDMHCDYCGNHYLFNAMDIAEIR 58 (62)
T ss_dssp CHHHHHHHHH-HHSEEEEECTTTCCEEEEEHHHHHHHT
T ss_pred CHHHHHHHHh-cCCCEEEEeeCCCCEEEECHHHHHHHH
Confidence 4677888888 57889999999875 788888887763
No 4
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=15.54 E-value=13 Score=34.66 Aligned_cols=113 Identities=11% Similarity=0.092 Sum_probs=61.2
Q ss_pred CCCCHhhHHHHhccCcEEEEEEeeCCC-C-cCCCCC------CCCCCCCCceeEEEEeeccchhhhccccccccccCccc
Q 012747 147 FPISDSDRTAMENCHGVVVVSAIFNNH-D-KIRQPR------GLGSKTLETVCFFMFVDDTTLKGLEHHHLIYEKSNEFK 218 (457)
Q Consensus 147 F~i~~~d~~~m~~c~kvVVyTAIFG~Y-D-~L~~P~------~i~~~s~d~VCF~mFtDe~tl~~l~~~g~~~~~~~~~~ 218 (457)
|+.+=-+..|-.+-=.|.|.+--+|.| + -|..=. .+. +. .|=|++|||+... +|....+ .
T Consensus 32 ~~~~~l~~~y~~~~~tIgl~vfAtgkY~~~Fl~~FleSaEk~Fm~--g~-~v~yyVFTD~~~~--------~P~i~l~-~ 99 (287)
T d1o7qa_ 32 YNRAVLDNYYAKQKITVGLTVFAVGRYIEHYLEEFLTSANKHFMV--GH-PVIFYIMVDDVSR--------MPLIELG-P 99 (287)
T ss_dssp BCHHHHHHHHHHHTCCEEEEEEECTTHHHHHHHHHHHHHHHHBST--TS-CEEEEEEESCGGG--------CCCCCCC-T
T ss_pred CCHHHHHHHHhhcCceEEEEEEEeChhHHHHHHHHHHHHHHhcCC--CC-eEEEEEEECCccc--------CCccccC-C
Confidence 555555666665554677777777988 5 232210 222 12 4778999998532 1211100 0
Q ss_pred ccceEEEEecCCCcCCCc--ccccccceeeccccCCCCCeEEEEeCceeEecCHH
Q 012747 219 IGAWRIVKVSSKNLYENP--AMNGVIPKYLVHRLFPNSKFSIWVDAKLQLTADPL 271 (457)
Q Consensus 219 ~g~WrIV~V~~~nLy~D~--rrngRipKiLpHrLFPny~ySIWIDgkiqL~~DP~ 271 (457)
.-.=+++.|..+.-..|. +|..-+-|...-++..++||-+.+|+++.++....
T Consensus 100 ~r~~~v~~v~~~~~Wp~iTL~Rm~~i~~~i~~~~~~e~Dylf~~DaDm~f~~~vg 154 (287)
T d1o7qa_ 100 LRSFKVFKIKPEKRWQDISMMRMKTIGEHIVAHIQHEVDFLFCMDVDQVFQDKFG 154 (287)
T ss_dssp TEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHTHHHHCSEEEEECSSEEECSCBC
T ss_pred ccceEEEEccccCCCchhHHHHHHHHHHHHHHhhhccCCeEEEEeCCceEecccc
Confidence 111234444421112232 33333333334577889999999999999976543
No 5
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.15 E-value=47 Score=23.56 Aligned_cols=49 Identities=14% Similarity=0.257 Sum_probs=25.9
Q ss_pred CCCCHhhHHHH-hccCcEEEEEEeeCCCCcCCCCCCCCCCCCCceeEEEEeeccch-hhhc
Q 012747 147 FPISDSDRTAM-ENCHGVVVVSAIFNNHDKIRQPRGLGSKTLETVCFFMFVDDTTL-KGLE 205 (457)
Q Consensus 147 F~i~~~d~~~m-~~c~kvVVyTAIFG~YD~L~~P~~i~~~s~d~VCF~mFtDe~tl-~~l~ 205 (457)
++++|+|+..+ +++ |.-.+++-|..-.......+||+.|.|.... +.|+
T Consensus 9 ~~~te~~l~~~F~~~----------G~I~~v~i~~d~~t~~~rG~~FV~f~~~~~a~~al~ 59 (75)
T d1x0fa1 9 PDTPEEKIREYFGGF----------GEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 59 (75)
T ss_dssp SSCCHHHHHHHHHHH----------SCEEEEECCCCTTTCCTTCCEEEEESSSHHHHHHTT
T ss_pred CCCCHHHHHHHHHHh----------CCcccccccccccccccccEEEEEECCHHHHHHHHh
Confidence 57888887655 334 2222222222111112357899999986654 4443
No 6
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.74 E-value=1.4e+02 Score=21.81 Aligned_cols=51 Identities=10% Similarity=0.077 Sum_probs=30.0
Q ss_pred cccC--CCCCHhhHHHHhccCcEEEEEEeeCCCCcCCCCCCCCCCCCCceeEEEEeeccchh
Q 012747 143 FFKK--FPISDSDRTAMENCHGVVVVSAIFNNHDKIRQPRGLGSKTLETVCFFMFVDDTTLK 202 (457)
Q Consensus 143 F~~~--F~i~~~d~~~m~~c~kvVVyTAIFG~YD~L~~P~~i~~~s~d~VCF~mFtDe~tl~ 202 (457)
||++ |++++.|+..+=....+++ .+|. +..+.. .....+||+.|.+.+..+
T Consensus 19 ~v~nLP~~~te~dI~~~F~~~g~v~-~~v~-----~~~~~~---~~~kG~afV~F~~~e~a~ 71 (104)
T d1wg5a_ 19 RLRGLPFGCSKEEIVQFFSGLEIVP-NGMT-----LPVDFQ---GRSTGEAFVQFASQEIAE 71 (104)
T ss_dssp EEESCCTTCCHHHHHHHTTTCCEEE-EEEE-----CCBCSS---SCBCSEEEEEESSHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCce-EEEE-----EEeCCC---CCcceEEEEEeCCHHHHH
Confidence 7887 8999998776544435444 3331 111111 123579999999865543
No 7
>d1vzya2 g.81.1.1 (A:234-290) HSP33, C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=11.22 E-value=29 Score=24.25 Aligned_cols=35 Identities=9% Similarity=0.339 Sum_probs=26.9
Q ss_pred hhhhhhhhhcccCccccccccccC-CCCCHhhHHHHh
Q 012747 123 TKKSIAYFDHQNNSLDLPCGFFKK-FPISDSDRTAME 158 (457)
Q Consensus 123 ~~~R~~sf~~~~~~~~vhCGF~~~-F~i~~~d~~~m~ 158 (457)
.++.++-++ .++..+|+|-|-+. +.+++.|+..+-
T Consensus 18 ~~el~~~~~-e~g~iev~C~fC~~~Y~f~~~dl~~l~ 53 (57)
T d1vzya2 18 KKEIQDMIE-EDGQAEAVCHFCNEKYLFTKEELEGLR 53 (57)
T ss_dssp HHHHHHHHH-HHSEEEEECTTTCCEEEEEHHHHHHHH
T ss_pred HHHHHHHHH-cCCCEEEEeeCCCCEEEECHHHHHHHH
Confidence 566777787 57889999999875 777777776653
No 8
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.70 E-value=68 Score=22.35 Aligned_cols=49 Identities=16% Similarity=0.309 Sum_probs=25.8
Q ss_pred cccC--CCCCHhhHH-HHhccCcEEEEEEeeCCCCcCCCCCCCCCCCCCceeEEEEeeccch
Q 012747 143 FFKK--FPISDSDRT-AMENCHGVVVVSAIFNNHDKIRQPRGLGSKTLETVCFFMFVDDTTL 201 (457)
Q Consensus 143 F~~~--F~i~~~d~~-~m~~c~kvVVyTAIFG~YD~L~~P~~i~~~s~d~VCF~mFtDe~tl 201 (457)
||.+ ++++|+|+. +++++ +-| .++-. +..+. ......+||+.|.|....
T Consensus 3 fV~nl~~~~te~~l~~~F~~~-G~i-~~~~i-----~~d~~---t~~~kg~afV~f~~~~~a 54 (75)
T d1hd0a_ 3 FIGGLSWDTTKKDLKDYFSKF-GEV-VDCTL-----KLDPI---TGRSRGFGFVLFKESESV 54 (75)
T ss_dssp EEECCCTTCCHHHHHHHHHTT-SCE-EEEEC-----CCBTT---TTBCCSEEEEEESSHHHH
T ss_pred EEeCCCCcCCHHHHHHHHHhh-ccc-ccccc-----ccCCC---CCCcCceEEEEECCHHHH
Confidence 4444 578887765 55666 222 22221 11111 112357899999985543
No 9
>d1vq0a2 g.81.1.1 (A:231-287) HSP33, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=10.44 E-value=44 Score=23.33 Aligned_cols=35 Identities=9% Similarity=0.194 Sum_probs=26.7
Q ss_pred chhhhhhhhhcccCccccccccccC-CCCCHhhHHHHh
Q 012747 122 GTKKSIAYFDHQNNSLDLPCGFFKK-FPISDSDRTAME 158 (457)
Q Consensus 122 s~~~R~~sf~~~~~~~~vhCGF~~~-F~i~~~d~~~m~ 158 (457)
+.++.++-++ ++..+|+|-|-+. +.+++.|+..+-
T Consensus 16 ~~~el~~m~~--eg~iev~C~FC~~~Y~f~~~el~~l~ 51 (57)
T d1vq0a2 16 DKKELEDMRK--EGKGEVVCKWCNTRYVFSEEELEELL 51 (57)
T ss_dssp CHHHHHHHHH--HTCEEEECTTTCCEEEECHHHHHHHH
T ss_pred CHHHHHHHHH--cCCeEEEeECCCCEEEECHHHHHHHH
Confidence 4567777776 4668999999875 788888877663
No 10
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=10.39 E-value=36 Score=28.96 Aligned_cols=33 Identities=15% Similarity=0.142 Sum_probs=27.7
Q ss_pred cceeeccccCCCCCeEEEEeCceeEecCHHHHHH
Q 012747 242 IPKYLVHRLFPNSKFSIWVDAKLQLTADPLLLIH 275 (457)
Q Consensus 242 ipKiLpHrLFPny~ySIWIDgkiqL~~DP~~lIe 275 (457)
+.|++.-. +++|+-.||||+-+.++.|+..|.+
T Consensus 84 y~Kl~i~~-l~~ydkvlYLDaD~lv~~~id~Lf~ 116 (263)
T d1ll2a_ 84 LTKLHCWS-LTQYSKCVFMDADTLVLANIDDLFE 116 (263)
T ss_dssp HHHGGGGG-CTTCSEEEEECTTEEECSCCGGGGG
T ss_pred hHHHHHhh-hcccceEEEeCCCEEEecCHHHHhc
Confidence 56888777 5889999999999999999876543
Done!