Query 012748
Match_columns 457
No_of_seqs 185 out of 1461
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 05:54:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012748.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012748hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01453 B_lectin: D-mannose b 100.0 7.1E-31 1.5E-35 226.2 3.3 110 69-180 1-114 (114)
2 cd00028 B_lectin Bulb-type man 99.9 2.6E-26 5.6E-31 198.4 15.3 115 30-148 2-116 (116)
3 smart00108 B_lectin Bulb-type 99.9 6E-25 1.3E-29 189.2 14.5 113 30-147 2-114 (114)
4 PF00954 S_locus_glycop: S-loc 99.9 1.2E-24 2.7E-29 186.2 9.9 99 206-304 1-110 (110)
5 PF08276 PAN_2: PAN-like domai 99.6 2.7E-15 6E-20 116.6 5.5 58 337-395 4-66 (66)
6 cd01098 PAN_AP_plant Plant PAN 99.5 1E-13 2.2E-18 112.0 7.8 72 338-410 12-84 (84)
7 cd00129 PAN_APPLE PAN/APPLE-li 99.4 1.9E-13 4.2E-18 110.0 6.4 68 337-409 8-80 (80)
8 smart00108 B_lectin Bulb-type 98.8 2E-08 4.3E-13 86.4 9.2 87 89-209 24-112 (114)
9 cd00028 B_lectin Bulb-type man 98.7 6.7E-08 1.4E-12 83.3 9.4 88 89-210 24-114 (116)
10 smart00473 PAN_AP divergent su 98.6 1.5E-07 3.2E-12 74.2 7.7 71 337-408 3-77 (78)
11 PF01453 B_lectin: D-mannose b 98.2 2.3E-05 5.1E-10 67.4 12.3 99 36-148 12-113 (114)
12 cd01100 APPLE_Factor_XI_like S 97.5 0.00014 3.1E-09 57.3 4.0 46 344-389 10-57 (73)
13 smart00223 APPLE APPLE domain. 91.9 0.23 4.9E-06 39.9 4.0 47 343-389 6-57 (79)
14 PF00024 PAN_1: PAN domain Thi 91.7 0.19 4.1E-06 39.1 3.3 50 340-389 4-56 (79)
15 PF08693 SKG6: Transmembrane a 88.6 0.36 7.8E-06 33.5 2.1 9 439-447 32-40 (40)
16 PF14295 PAN_4: PAN domain; PD 88.4 0.45 9.7E-06 33.9 2.7 28 359-386 17-50 (51)
17 PF02009 Rifin_STEVOR: Rifin/s 87.8 0.36 7.8E-06 48.5 2.5 21 431-451 268-288 (299)
18 smart00605 CW CW domain. 87.4 2.7 5.8E-05 34.5 7.2 54 359-412 23-77 (94)
19 PF04478 Mid2: Mid2 like cell 87.2 0.37 7.9E-06 43.3 1.9 8 423-430 52-59 (154)
20 PF08277 PAN_3: PAN-like domai 86.0 2.9 6.2E-05 32.1 6.3 38 359-397 21-58 (71)
21 PF01102 Glycophorin_A: Glycop 85.1 0.36 7.8E-06 42.0 0.8 15 434-448 81-95 (122)
22 PRK11138 outer membrane biogen 84.6 18 0.00039 37.4 13.3 57 88-144 122-186 (394)
23 cd00053 EGF Epidermal growth f 80.6 1.3 2.9E-05 28.3 2.1 29 274-302 2-31 (36)
24 PF07645 EGF_CA: Calcium-bindi 79.2 0.63 1.4E-05 32.4 0.1 31 272-302 3-35 (42)
25 cd01099 PAN_AP_HGF Subfamily o 78.0 6.8 0.00015 31.1 5.8 31 359-389 26-59 (80)
26 PF01683 EB: EB module; Inter 76.0 2.2 4.8E-05 30.9 2.2 34 268-304 16-49 (52)
27 PF05568 ASFV_J13L: African sw 75.2 1.8 3.9E-05 38.4 1.8 29 425-453 34-62 (189)
28 smart00179 EGF_CA Calcium-bind 74.4 2.6 5.6E-05 27.9 2.1 30 272-301 3-33 (39)
29 PF15050 SCIMP: SCIMP protein 74.0 2.7 5.8E-05 36.2 2.4 28 426-453 15-42 (133)
30 PF09064 Tme5_EGF_like: Thromb 69.7 2.7 5.8E-05 28.1 1.2 18 285-302 11-28 (34)
31 PF02439 Adeno_E3_CR2: Adenovi 69.0 3.1 6.8E-05 28.5 1.4 9 441-449 28-36 (38)
32 cd00054 EGF_CA Calcium-binding 68.5 4.1 9E-05 26.4 2.0 30 272-301 3-33 (38)
33 PF05393 Hum_adeno_E3A: Human 68.5 5.7 0.00012 32.3 3.0 22 429-450 41-62 (94)
34 PF07974 EGF_2: EGF-like domai 68.4 4.3 9.3E-05 26.7 2.0 24 278-302 6-29 (32)
35 PF05454 DAG1: Dystroglycan (D 68.3 1.6 3.6E-05 43.6 0.0 21 431-451 159-179 (290)
36 PF12661 hEGF: Human growth fa 65.4 1.4 3E-05 23.1 -0.6 9 293-301 1-9 (13)
37 TIGR01477 RIFIN variant surfac 64.3 3.2 6.9E-05 42.5 1.1 8 291-298 126-133 (353)
38 TIGR03300 assembly_YfgL outer 64.2 26 0.00057 35.7 7.9 20 93-112 73-93 (377)
39 PF15330 SIT: SHP2-interacting 63.2 7.6 0.00016 33.0 3.1 22 431-452 11-32 (107)
40 PTZ00046 rifin; Provisional 63.0 5.2 0.00011 41.1 2.4 18 432-449 328-345 (358)
41 PHA03265 envelope glycoprotein 62.8 6.3 0.00014 40.1 2.9 24 423-446 352-376 (402)
42 PF14610 DUF4448: Protein of u 62.6 4 8.7E-05 38.1 1.4 26 423-448 162-187 (189)
43 PRK11138 outer membrane biogen 61.9 22 0.00047 36.7 6.9 63 80-143 64-145 (394)
44 TIGR01478 STEVOR variant surfa 61.2 5.3 0.00011 39.6 2.0 14 435-448 274-287 (295)
45 PF12662 cEGF: Complement Clr- 60.8 4 8.7E-05 25.1 0.7 11 293-303 3-13 (24)
46 KOG4649 PQQ (pyrrolo-quinoline 60.1 37 0.00079 33.7 7.4 47 68-114 167-218 (354)
47 PF13360 PQQ_2: PQQ-like domai 59.9 21 0.00046 33.3 5.9 51 94-144 2-62 (238)
48 PTZ00370 STEVOR; Provisional 59.3 5.9 0.00013 39.3 2.0 14 435-448 270-283 (296)
49 TIGR03300 assembly_YfgL outer 55.6 60 0.0013 33.1 8.8 55 89-144 245-305 (377)
50 PF13360 PQQ_2: PQQ-like domai 55.0 66 0.0014 29.9 8.4 75 69-144 12-102 (238)
51 PF01034 Syndecan: Syndecan do 53.4 4.2 9E-05 31.2 -0.1 20 431-450 23-42 (64)
52 PF01299 Lamp: Lysosome-associ 52.9 3.3 7.1E-05 41.7 -1.0 18 431-448 284-301 (306)
53 cd05845 Ig2_L1-CAM_like Second 52.3 24 0.00052 29.2 4.2 33 67-100 31-63 (95)
54 PF01102 Glycophorin_A: Glycop 49.6 18 0.00038 31.6 3.1 25 427-451 71-95 (122)
55 smart00181 EGF Epidermal growt 49.5 13 0.00029 23.9 1.9 24 278-302 6-30 (35)
56 PF12947 EGF_3: EGF domain; I 49.2 3.4 7.4E-05 27.9 -1.1 25 277-301 5-30 (36)
57 cd00216 PQQ_DH Dehydrogenases 49.2 53 0.0011 35.2 7.5 75 68-144 37-136 (488)
58 PF08114 PMP1_2: ATPase proteo 48.9 26 0.00057 24.4 3.2 19 431-449 19-37 (43)
59 PF12877 DUF3827: Domain of un 48.8 24 0.00052 38.9 4.6 8 406-413 254-261 (684)
60 PF00008 EGF: EGF-like domain 47.5 4.6 9.9E-05 26.4 -0.6 23 279-301 5-29 (32)
61 KOG3637 Vitronectin receptor, 46.4 13 0.00029 43.6 2.5 22 423-444 981-1002(1030)
62 PTZ00382 Variant-specific surf 44.4 14 0.0003 30.8 1.6 8 296-303 9-16 (96)
63 PF01436 NHL: NHL repeat; Int 43.9 34 0.00074 21.4 3.1 21 88-108 6-26 (28)
64 PF06365 CD34_antigen: CD34/Po 43.9 19 0.00041 34.2 2.6 23 431-453 114-136 (202)
65 PF10883 DUF2681: Protein of u 43.4 14 0.00031 30.2 1.5 24 431-454 12-35 (87)
66 PF14991 MLANA: Protein melan- 42.5 7.4 0.00016 33.3 -0.3 10 426-435 28-37 (118)
67 PF12768 Rax2: Cortical protei 42.1 31 0.00066 34.5 4.0 22 431-452 241-262 (281)
68 KOG1219 Uncharacterized conser 39.6 36 0.00078 43.1 4.5 26 278-303 3870-3897(4289)
69 PF15345 TMEM51: Transmembrane 37.8 43 0.00094 32.3 4.0 6 425-430 63-68 (233)
70 PF02009 Rifin_STEVOR: Rifin/s 32.7 20 0.00043 36.2 0.9 25 425-449 265-289 (299)
71 PF12669 P12: Virus attachment 31.9 53 0.0012 24.7 2.9 10 438-447 17-26 (58)
72 PF06697 DUF1191: Protein of u 31.4 42 0.00091 33.4 2.9 10 437-446 232-241 (278)
73 PF12191 stn_TNFRSF12A: Tumour 31.2 16 0.00035 31.9 0.0 8 438-445 97-104 (129)
74 PF14269 Arylsulfotran_2: Aryl 30.2 4E+02 0.0086 26.7 9.8 14 121-134 264-277 (299)
75 KOG1094 Discoidin domain recep 29.0 36 0.00078 37.5 2.1 18 431-448 402-419 (807)
76 PF13268 DUF4059: Protein of u 28.8 53 0.0011 25.8 2.5 19 434-452 22-40 (72)
77 PF05337 CSF-1: Macrophage col 28.2 19 0.00042 35.6 0.0 21 431-451 237-257 (285)
78 KOG1226 Integrin beta subunit 27.5 1.7E+02 0.0037 33.1 7.0 23 423-445 716-738 (783)
79 PF02480 Herpes_gE: Alphaherpe 26.4 22 0.00048 37.8 0.0 13 314-326 238-251 (439)
80 PF07354 Sp38: Zona-pellucida- 26.0 89 0.0019 30.9 4.1 35 67-102 10-44 (271)
81 PF02038 ATP1G1_PLM_MAT8: ATP1 25.8 47 0.001 24.3 1.6 20 426-445 20-39 (50)
82 PF05935 Arylsulfotrans: Aryls 25.1 2.4E+02 0.0051 30.3 7.6 63 69-135 136-208 (477)
83 PF12690 BsuPI: Intracellular 24.6 2.3E+02 0.005 22.6 5.7 16 96-111 27-42 (82)
84 PF04478 Mid2: Mid2 like cell 24.5 21 0.00046 32.3 -0.5 15 420-434 52-67 (154)
85 PHA02887 EGF-like protein; Pro 24.2 67 0.0014 27.8 2.5 58 243-301 53-117 (126)
86 TIGR03141 cytochro_ccmD heme e 24.2 31 0.00067 24.4 0.4 24 427-450 12-35 (45)
87 PF14870 PSII_BNR: Photosynthe 24.1 7.5E+02 0.016 24.9 13.4 13 243-255 290-302 (302)
88 PF07213 DAP10: DAP10 membrane 23.7 53 0.0011 26.3 1.7 11 444-454 61-71 (79)
89 PF14670 FXa_inhibition: Coagu 22.8 29 0.00062 23.5 0.0 14 290-303 17-30 (36)
90 PRK05886 yajC preprotein trans 22.6 52 0.0011 28.1 1.6 14 436-449 16-29 (109)
91 TIGR03075 PQQ_enz_alc_DH PQQ-d 22.3 3.7E+02 0.008 29.3 8.5 76 68-144 45-146 (527)
92 PF14575 EphA2_TM: Ephrin type 21.3 37 0.00081 26.8 0.4 10 437-446 19-28 (75)
93 COG1520 FOG: WD40-like repeat 21.1 5.5E+02 0.012 26.0 9.2 75 69-143 87-178 (370)
94 KOG0640 mRNA cleavage stimulat 20.7 3.2E+02 0.0069 27.9 6.8 71 72-143 250-333 (430)
95 PF10080 DUF2318: Predicted me 20.7 1.1E+02 0.0024 25.8 3.2 42 272-321 36-78 (102)
96 PF01011 PQQ: PQQ enzyme repea 20.0 99 0.0021 20.5 2.3 19 125-143 7-25 (38)
No 1
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=99.96 E-value=7.1e-31 Score=226.19 Aligned_cols=110 Identities=45% Similarity=0.766 Sum_probs=80.9
Q ss_pred CCeEEEEecCCCCCCCC--CcEEEEecCCcEEEEcCCCeEEEee-cCCCCC-CCceEEEEccCCCEEEEeccCCeEEEee
Q 012748 69 EKAVIWVANRDNPLKDS--SGIITISEDGNLVLVNGQKEVLWSS-NVSNLV-NNSTSAQLLDSGNLVLRDNINRAIVWES 144 (457)
Q Consensus 69 ~~tvVW~ANr~~Pv~~~--~~~l~l~~dG~L~l~d~~~~~vWst-~~~~~~-~~~~~a~LldsGNlVl~d~~~~~~lWQS 144 (457)
++||||+|||+.|+... ..+|.|+.||+|+|+|..++.+|++ ++.+.. .+. .|+|+|+|||||+|. .+.+||||
T Consensus 1 ~~tvvW~an~~~p~~~~s~~~~L~l~~dGnLvl~~~~~~~iWss~~t~~~~~~~~-~~~L~~~GNlvl~d~-~~~~lW~S 78 (114)
T PF01453_consen 1 PRTVVWVANRNSPLTSSSGNYTLILQSDGNLVLYDSNGSVIWSSNNTSGRGNSGC-YLVLQDDGNLVLYDS-SGNVLWQS 78 (114)
T ss_dssp ---------TTEEEEECETTEEEEEETTSEEEEEETTTEEEEE--S-TTSS-SSE-EEEEETTSEEEEEET-TSEEEEES
T ss_pred CcccccccccccccccccccccceECCCCeEEEEcCCCCEEEEecccCCccccCe-EEEEeCCCCEEEEee-cceEEEee
Confidence 46899999999999542 4789999999999999999999999 555543 356 999999999999997 78999999
Q ss_pred ccCCCCcCCCCceeeeeecCCceeEEEeccCCCCCC
Q 012748 145 FQEPTDSFLPGMHHGIDQRTGKKVQLTSWKSLSDPS 180 (457)
Q Consensus 145 Fd~PTDTLLPGq~L~~~~~tG~~~~L~Sw~s~~dps 180 (457)
|||||||+||||+|+.+..+|.+..|+||++.+|||
T Consensus 79 f~~ptdt~L~~q~l~~~~~~~~~~~~~sw~s~~dps 114 (114)
T PF01453_consen 79 FDYPTDTLLPGQKLGDGNVTGKNDSLTSWSSNTDPS 114 (114)
T ss_dssp TTSSS-EEEEEET--TSEEEEESTSSEEEESS----
T ss_pred cCCCccEEEeccCcccCCCccccceEEeECCCCCCC
Confidence 999999999999999877776666799999999996
No 2
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=99.94 E-value=2.6e-26 Score=198.41 Aligned_cols=115 Identities=43% Similarity=0.720 Sum_probs=100.5
Q ss_pred CcccCCCeEEeCCCeeEEEEECCCCCCceEEEEEEeCCCCCeEEEEecCCCCCCCCCcEEEEecCCcEEEEcCCCeEEEe
Q 012748 30 QLIRDPDAILSNGSNFKLGFFNPADSPYRYMGIWYDMPSEKAVIWVANRDNPLKDSSGIITISEDGNLVLVNGQKEVLWS 109 (457)
Q Consensus 30 ~~l~~~~~L~S~~g~F~lGF~~~~~~~~~ylgIwy~~~~~~tvVW~ANr~~Pv~~~~~~l~l~~dG~L~l~d~~~~~vWs 109 (457)
+.|..+++|+|+++.|++|||.+......+.+|||.+.+ .++||+||++.|. ...++|.|+.||+|+|+|.+|.++|+
T Consensus 2 ~~l~~~~~l~s~~~~f~~G~~~~~~q~~dgnlv~~~~~~-~~~vW~snt~~~~-~~~~~l~l~~dGnLvl~~~~g~~vW~ 79 (116)
T cd00028 2 NPLSSGQTLVSSGSLFELGFFKLIMQSRDYNLILYKGSS-RTVVWVANRDNPS-GSSCTLTLQSDGNLVIYDGSGTVVWS 79 (116)
T ss_pred cCcCCCCEEEeCCCcEEEecccCCCCCCeEEEEEEeCCC-CeEEEECCCCCCC-CCCEEEEEecCCCeEEEcCCCcEEEE
Confidence 567889999999999999999986543378999998876 7899999999984 35678999999999999999999999
Q ss_pred ecCCCCCCCceEEEEccCCCEEEEeccCCeEEEeeccCC
Q 012748 110 SNVSNLVNNSTSAQLLDSGNLVLRDNINRAIVWESFQEP 148 (457)
Q Consensus 110 t~~~~~~~~~~~a~LldsGNlVl~d~~~~~~lWQSFd~P 148 (457)
+++.+..... +|+|+|+|||||++. ++.+||||||||
T Consensus 80 S~~~~~~~~~-~~~L~ddGnlvl~~~-~~~~~W~Sf~~P 116 (116)
T cd00028 80 SNTTRVNGNY-VLVLLDDGNLVLYDS-DGNFLWQSFDYP 116 (116)
T ss_pred ecccCCCCce-EEEEeCCCCEEEECC-CCCEEEcCCCCC
Confidence 9987622346 899999999999998 688999999999
No 3
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=99.93 E-value=6e-25 Score=189.24 Aligned_cols=113 Identities=42% Similarity=0.713 Sum_probs=99.1
Q ss_pred CcccCCCeEEeCCCeeEEEEECCCCCCceEEEEEEeCCCCCeEEEEecCCCCCCCCCcEEEEecCCcEEEEcCCCeEEEe
Q 012748 30 QLIRDPDAILSNGSNFKLGFFNPADSPYRYMGIWYDMPSEKAVIWVANRDNPLKDSSGIITISEDGNLVLVNGQKEVLWS 109 (457)
Q Consensus 30 ~~l~~~~~L~S~~g~F~lGF~~~~~~~~~ylgIwy~~~~~~tvVW~ANr~~Pv~~~~~~l~l~~dG~L~l~d~~~~~vWs 109 (457)
+.|.++++|+|+++.|++|||.+... ..+.+|||...+ .++||+|||+.|+.+ ++.|.|++||+|+|+|.+|.++|+
T Consensus 2 ~~l~~~~~l~s~~~~f~~G~~~~~~q-~dgnlV~~~~~~-~~~vW~snt~~~~~~-~~~l~l~~dGnLvl~~~~g~~vW~ 78 (114)
T smart00108 2 NTLSSGQTLVSGNSLFELGFFTLIMQ-NDYNLILYKSSS-RTVVWVANRDNPVSD-SCTLTLQSDGNLVLYDGDGRVVWS 78 (114)
T ss_pred cccCCCCEEecCCCcEeeeccccCCC-CCEEEEEEECCC-CcEEEECCCCCCCCC-CEEEEEeCCCCEEEEeCCCCEEEE
Confidence 46788999999999999999998643 478899999876 889999999999875 478999999999999999999999
Q ss_pred ecCCCCCCCceEEEEccCCCEEEEeccCCeEEEeeccC
Q 012748 110 SNVSNLVNNSTSAQLLDSGNLVLRDNINRAIVWESFQE 147 (457)
Q Consensus 110 t~~~~~~~~~~~a~LldsGNlVl~d~~~~~~lWQSFd~ 147 (457)
+++....... .|+|+|+|||||++. .+++|||||||
T Consensus 79 S~t~~~~~~~-~~~L~ddGnlvl~~~-~~~~~W~Sf~~ 114 (114)
T smart00108 79 SNTTGANGNY-VLVLLDDGNLVIYDS-DGNFLWQSFDY 114 (114)
T ss_pred ecccCCCCce-EEEEeCCCCEEEECC-CCCEEeCCCCC
Confidence 9987223346 899999999999998 67899999997
No 4
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=99.91 E-value=1.2e-24 Score=186.20 Aligned_cols=99 Identities=48% Similarity=1.026 Sum_probs=88.2
Q ss_pred eecCCCCCceeeecccceeeeeeeEEEE---------EEeeCCeEE--EEEecCCCEEEEEEecCCCceEEEeeecCCCC
Q 012748 206 WRSGPWNGQIFIGIPELKSVYLFRHNFT---------FGFANDWTF--FALTAQGILEERIWIKWKDNWEVGFLNLRTEC 274 (457)
Q Consensus 206 w~sg~w~g~~~~~~~~~~~~~~~~~~~~---------~~~~~~s~~--~~Ld~dG~l~~y~~~~~~~~W~~~~~~p~d~C 274 (457)
||+|+|+|..|+++|+|....++.++|+ |...+.+++ ++||++|++++|.|++..++|...|.+|.|+|
T Consensus 1 wrsG~WnG~~f~g~p~~~~~~~~~~~fv~~~~e~~~t~~~~~~s~~~r~~ld~~G~l~~~~w~~~~~~W~~~~~~p~d~C 80 (110)
T PF00954_consen 1 WRSGPWNGQRFSGIPEMSSNSLYNYSFVSNNEEVYYTYSLSNSSVLSRLVLDSDGQLQRYIWNESTQSWSVFWSAPKDQC 80 (110)
T ss_pred CCccccCCeEECCcccccccceeEEEEEECCCeEEEEEecCCCceEEEEEEeeeeEEEEEEEecCCCcEEEEEEecccCC
Confidence 8999999999999999986666666665 444555554 99999999999999999999999999999999
Q ss_pred ccccccCCCcccCCCCCCccccCCCCCCCC
Q 012748 275 DVYGKCGAFGICNSQEKPICSCLEGFEPKN 304 (457)
Q Consensus 275 ~~~~~CG~~giC~~~~~~~C~C~~GF~p~~ 304 (457)
|+|+.||+||+|+.+..+.|+||+||+|++
T Consensus 81 d~y~~CG~~g~C~~~~~~~C~Cl~GF~P~n 110 (110)
T PF00954_consen 81 DVYGFCGPNGICNSNNSPKCSCLPGFEPKN 110 (110)
T ss_pred CCccccCCccEeCCCCCCceECCCCcCCCc
Confidence 999999999999988889999999999974
No 5
>PF08276 PAN_2: PAN-like domain; InterPro: IPR013227 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs
Probab=99.57 E-value=2.7e-15 Score=116.55 Aligned_cols=58 Identities=48% Similarity=1.110 Sum_probs=50.2
Q ss_pred CCCeEEeeeccCCCCcc-cCCCC-CHHHHHHHhhccCCeEEEEeC---CCCceEEeecCcccee
Q 012748 337 EDGFSKLNKMKVPDFTE-WTSPA-TEDECREQCLKNCSCIAYAFD---GGIGCMVWRSINLIDI 395 (457)
Q Consensus 337 ~~~f~~l~~~~~p~~~~-~~~~~-~~~~C~~~Cl~nCsC~A~~y~---~~~~C~~w~~~~l~~~ 395 (457)
+|+|++|++|++|+++. ....+ ++++||++||+||||+||+|. ++++|++|++ +|+|+
T Consensus 4 ~d~F~~l~~~~~p~~~~~~~~~~~s~~~C~~~Cl~nCsC~Ayay~~~~~~~~C~lW~~-~L~d~ 66 (66)
T PF08276_consen 4 GDGFLKLPNMKLPDFDNAIVDSSVSLEECEKACLSNCSCTAYAYSNLSGGGGCLLWYG-DLVDL 66 (66)
T ss_pred CCEEEEECCeeCCCCcceeeecCCCHHHHHhhcCCCCCEeeEEeeccCCCCEEEEEcC-EeecC
Confidence 68999999999999866 43333 899999999999999999993 5678999999 99875
No 6
>cd01098 PAN_AP_plant Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. S-receptor protein kinases and S-locus glycoproteins are involved in sporophytic self-incompatibility response in Brassica, one of probably many molecular mechanisms, by which hermaphrodite flowering plants avoid self-fertilization.
Probab=99.48 E-value=1e-13 Score=111.98 Aligned_cols=72 Identities=46% Similarity=0.956 Sum_probs=58.8
Q ss_pred CCeEEeeeccCCCCcccCCCCCHHHHHHHhhccCCeEEEEe-CCCCceEEeecCccceeeeccCCCeeEEEEEe
Q 012748 338 DGFSKLNKMKVPDFTEWTSPATEDECREQCLKNCSCIAYAF-DGGIGCMVWRSINLIDIQRLPFGGTDLYIRVA 410 (457)
Q Consensus 338 ~~f~~l~~~~~p~~~~~~~~~~~~~C~~~Cl~nCsC~A~~y-~~~~~C~~w~~~~l~~~~~~~~~~~~~yikv~ 410 (457)
++|+++.++++|+........++++|+++||+||+|+||+| +++++|++|.+ ++.+.+.....+.++||||+
T Consensus 12 ~~f~~~~~~~~~~~~~~~~~~s~~~C~~~Cl~nCsC~a~~~~~~~~~C~~~~~-~~~~~~~~~~~~~~~yiKv~ 84 (84)
T cd01098 12 DGFLKLPDVKLPDNASAITAISLEECREACLSNCSCTAYAYNNGSGGCLLWNG-LLNNLRSLSSGGGTLYLRLA 84 (84)
T ss_pred CEEEEeCCeeCCCchhhhccCCHHHHHHHHhcCCCcceeeecCCCCeEEEEec-eecceEeecCCCcEEEEEeC
Confidence 68999999999987552222289999999999999999999 44568999999 88887765545689999985
No 7
>cd00129 PAN_APPLE PAN/APPLE-like domain; present in N-terminal (N) domains of plasminogen/ hepatocyte growth factor proteins, plasma prekallikrein/coagulation factor XI and microneme antigen proteins, plant receptor-like protein kinases, and various nematode and leech anti-platelet proteins. Common structural features include two disulfide bonds that link the alpha-helix to the central region of the protein. PAN domains have significant functional versatility, fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=99.43 E-value=1.9e-13 Score=110.01 Aligned_cols=68 Identities=25% Similarity=0.372 Sum_probs=59.1
Q ss_pred CCCeEEeeeccCCCCcccCCCCCHHHHHHHhhc---cCCeEEEEe-CCCCceEEeecCcc-ceeeeccCCCeeEEEEE
Q 012748 337 EDGFSKLNKMKVPDFTEWTSPATEDECREQCLK---NCSCIAYAF-DGGIGCMVWRSINL-IDIQRLPFGGTDLYIRV 409 (457)
Q Consensus 337 ~~~f~~l~~~~~p~~~~~~~~~~~~~C~~~Cl~---nCsC~A~~y-~~~~~C~~w~~~~l-~~~~~~~~~~~~~yikv 409 (457)
+..|+++.++++|++.. .++++|++.|++ ||||.||+| +.+++|++|++ +| +|+++...++.++|||.
T Consensus 8 ~g~fl~~~~~klpd~~~----~s~~eC~~~Cl~~~~nCsC~Aya~~~~~~gC~~W~~-~l~~d~~~~~~~g~~Ly~r~ 80 (80)
T cd00129 8 AGTTLIKIALKIKTTKA----NTADECANRCEKNGLPFSCKAFVFAKARKQCLWFPF-NSMSGVRKEFSHGFDLYENK 80 (80)
T ss_pred CCeEEEeecccCCcccc----cCHHHHHHHHhcCCCCCCceeeeccCCCCCeEEecC-cchhhHHhccCCCceeEeEC
Confidence 56799999999998653 279999999999 999999999 34568999999 99 99988877799999983
No 8
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=98.82 E-value=2e-08 Score=86.35 Aligned_cols=87 Identities=29% Similarity=0.497 Sum_probs=64.4
Q ss_pred EEEecCCcEEEEcCC-CeEEEeecCCCCCC-CceEEEEccCCCEEEEeccCCeEEEeeccCCCCcCCCCceeeeeecCCc
Q 012748 89 ITISEDGNLVLVNGQ-KEVLWSSNVSNLVN-NSTSAQLLDSGNLVLRDNINRAIVWESFQEPTDSFLPGMHHGIDQRTGK 166 (457)
Q Consensus 89 l~l~~dG~L~l~d~~-~~~vWst~~~~~~~-~~~~a~LldsGNlVl~d~~~~~~lWQSFd~PTDTLLPGq~L~~~~~tG~ 166 (457)
+.+..||+||+++.. +.++|++++..+.. .. .++|+++|||||++. ++.++|+| .|
T Consensus 24 ~~~q~dgnlV~~~~~~~~~vW~snt~~~~~~~~-~l~l~~dGnLvl~~~-~g~~vW~S---~t----------------- 81 (114)
T smart00108 24 LIMQNDYNLILYKSSSRTVVWVANRDNPVSDSC-TLTLQSDGNLVLYDG-DGRVVWSS---NT----------------- 81 (114)
T ss_pred cCCCCCEEEEEEECCCCcEEEECCCCCCCCCCE-EEEEeCCCCEEEEeC-CCCEEEEe---cc-----------------
Confidence 455689999999865 57999999865432 25 889999999999998 67889987 11
Q ss_pred eeEEEeccCCCCCCCcceEEEeecCCcceEEecCCCcceeecC
Q 012748 167 KVQLTSWKSLSDPSTGSFSAGLIHQNIPEIFVWNVSRPYWRSG 209 (457)
Q Consensus 167 ~~~L~Sw~s~~dps~G~ysl~l~~~g~~~l~~~~~~~~yw~sg 209 (457)
....|.|.+.|+++|+.+++- ...++.|.|.
T Consensus 82 -----------~~~~~~~~~~L~ddGnlvl~~-~~~~~~W~Sf 112 (114)
T smart00108 82 -----------TGANGNYVLVLLDDGNLVIYD-SDGNFLWQSF 112 (114)
T ss_pred -----------cCCCCceEEEEeCCCCEEEEC-CCCCEEeCCC
Confidence 013456889999999977653 2346788763
No 9
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=98.72 E-value=6.7e-08 Score=83.35 Aligned_cols=88 Identities=25% Similarity=0.435 Sum_probs=64.6
Q ss_pred EEEec-CCcEEEEcCC-CeEEEeecCCCC-CCCceEEEEccCCCEEEEeccCCeEEEeeccCCCCcCCCCceeeeeecCC
Q 012748 89 ITISE-DGNLVLVNGQ-KEVLWSSNVSNL-VNNSTSAQLLDSGNLVLRDNINRAIVWESFQEPTDSFLPGMHHGIDQRTG 165 (457)
Q Consensus 89 l~l~~-dG~L~l~d~~-~~~vWst~~~~~-~~~~~~a~LldsGNlVl~d~~~~~~lWQSFd~PTDTLLPGq~L~~~~~tG 165 (457)
+.++. ||+|++++.. +.++|++++..+ .... .++|.++|||||++. ++.++|+|=-.
T Consensus 24 ~~~q~~dgnlv~~~~~~~~~vW~snt~~~~~~~~-~l~l~~dGnLvl~~~-~g~~vW~S~~~------------------ 83 (116)
T cd00028 24 LIMQSRDYNLILYKGSSRTVVWVANRDNPSGSSC-TLTLQSDGNLVIYDG-SGTVVWSSNTT------------------ 83 (116)
T ss_pred CCCCCCeEEEEEEeCCCCeEEEECCCCCCCCCCE-EEEEecCCCeEEEcC-CCcEEEEeccc------------------
Confidence 34455 9999999765 579999998653 2235 789999999999998 67889987110
Q ss_pred ceeEEEeccCCCCCCCcceEEEeecCCcceEEecCCCcceeecCC
Q 012748 166 KKVQLTSWKSLSDPSTGSFSAGLIHQNIPEIFVWNVSRPYWRSGP 210 (457)
Q Consensus 166 ~~~~L~Sw~s~~dps~G~ysl~l~~~g~~~l~~~~~~~~yw~sg~ 210 (457)
...+.+.+.|+++|+.+++-. ...+.|.|..
T Consensus 84 -------------~~~~~~~~~L~ddGnlvl~~~-~~~~~W~Sf~ 114 (116)
T cd00028 84 -------------RVNGNYVLVLLDDGNLVLYDS-DGNFLWQSFD 114 (116)
T ss_pred -------------CCCCceEEEEeCCCCEEEECC-CCCEEEcCCC
Confidence 024678899999999776533 3467888753
No 10
>smart00473 PAN_AP divergent subfamily of APPLE domains. Apple-like domains present in Plasminogen, C. elegans hypothetical ORFs and the extracellular portion of plant receptor-like protein kinases. Predicted to possess protein- and/or carbohydrate-binding functions.
Probab=98.61 E-value=1.5e-07 Score=74.16 Aligned_cols=71 Identities=39% Similarity=0.889 Sum_probs=54.7
Q ss_pred CCCeEEeeeccCCCCcc-cCCCCCHHHHHHHhhc-cCCeEEEEeCC-CCceEEee-cCccceeeeccCCCeeEEEE
Q 012748 337 EDGFSKLNKMKVPDFTE-WTSPATEDECREQCLK-NCSCIAYAFDG-GIGCMVWR-SINLIDIQRLPFGGTDLYIR 408 (457)
Q Consensus 337 ~~~f~~l~~~~~p~~~~-~~~~~~~~~C~~~Cl~-nCsC~A~~y~~-~~~C~~w~-~~~l~~~~~~~~~~~~~yik 408 (457)
...|..++++.+++... .....++++|++.|++ +|+|.||.|+. +.+|.+|. + ++.+.......+.++|.|
T Consensus 3 ~~~f~~~~~~~l~~~~~~~~~~~s~~~C~~~C~~~~~~C~s~~y~~~~~~C~l~~~~-~~~~~~~~~~~~~~~y~~ 77 (78)
T smart00473 3 DDCFVRLPNTKLPGFSRIVISVASLEECASKCLNSNCSCRSFTYNNGTKGCLLWSES-SLGDARLFPSGGVDLYEK 77 (78)
T ss_pred CceeEEecCccCCCCcceeEcCCCHHHHHHHhCCCCCceEEEEEcCCCCEEEEeeCC-ccccceecccCCceeEEe
Confidence 35688999999986544 2222289999999999 99999999953 56799999 7 777776555566777876
No 11
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=98.22 E-value=2.3e-05 Score=67.43 Aligned_cols=99 Identities=26% Similarity=0.472 Sum_probs=66.8
Q ss_pred CeEEeCCCeeEEEEECCCCCCceEEEEEEeCCCCCeEEEEe-cCCCCCCCCCcEEEEecCCcEEEEcCCCeEEEeecCCC
Q 012748 36 DAILSNGSNFKLGFFNPADSPYRYMGIWYDMPSEKAVIWVA-NRDNPLKDSSGIITISEDGNLVLVNGQKEVLWSSNVSN 114 (457)
Q Consensus 36 ~~L~S~~g~F~lGF~~~~~~~~~ylgIwy~~~~~~tvVW~A-Nr~~Pv~~~~~~l~l~~dG~L~l~d~~~~~vWst~~~~ 114 (457)
+.+.+.+|.+.|-|...++ | +.|.. ..++||.. +...... ..+.+.|..||||||+|..+.++|++...
T Consensus 12 ~p~~~~s~~~~L~l~~dGn-----L-vl~~~--~~~~iWss~~t~~~~~-~~~~~~L~~~GNlvl~d~~~~~lW~Sf~~- 81 (114)
T PF01453_consen 12 SPLTSSSGNYTLILQSDGN-----L-VLYDS--NGSVIWSSNNTSGRGN-SGCYLVLQDDGNLVLYDSSGNVLWQSFDY- 81 (114)
T ss_dssp EEEEECETTEEEEEETTSE-----E-EEEET--TTEEEEE--S-TTSS--SSEEEEEETTSEEEEEETTSEEEEESTTS-
T ss_pred cccccccccccceECCCCe-----E-EEEcC--CCCEEEEecccCCccc-cCeEEEEeCCCCEEEEeecceEEEeecCC-
Confidence 4565655889999987553 3 23443 35779999 4444332 35789999999999999999999999432
Q ss_pred CCCCceEEEEcc--CCCEEEEeccCCeEEEeeccCC
Q 012748 115 LVNNSTSAQLLD--SGNLVLRDNINRAIVWESFQEP 148 (457)
Q Consensus 115 ~~~~~~~a~Lld--sGNlVl~d~~~~~~lWQSFd~P 148 (457)
++ .+ .+.+++ .||++ +.. ...+.|.|=+.|
T Consensus 82 pt-dt-~L~~q~l~~~~~~-~~~-~~~~sw~s~~dp 113 (114)
T PF01453_consen 82 PT-DT-LLPGQKLGDGNVT-GKN-DSLTSWSSNTDP 113 (114)
T ss_dssp SS--E-EEEEET--TSEEE-EES-TSSEEEESS---
T ss_pred Cc-cE-EEeccCcccCCCc-ccc-ceEEeECCCCCC
Confidence 22 35 677777 89988 654 457899986666
No 12
>cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=97.45 E-value=0.00014 Score=57.29 Aligned_cols=46 Identities=13% Similarity=0.417 Sum_probs=33.0
Q ss_pred eeccCCCCcc-cCCCCCHHHHHHHhhccCCeEEEEeC-CCCceEEeec
Q 012748 344 NKMKVPDFTE-WTSPATEDECREQCLKNCSCIAYAFD-GGIGCMVWRS 389 (457)
Q Consensus 344 ~~~~~p~~~~-~~~~~~~~~C~~~Cl~nCsC~A~~y~-~~~~C~~w~~ 389 (457)
++++++..+. .....+.++|++.|+.+|+|.||.|+ +...|+++..
T Consensus 10 ~~~~~~g~d~~~~~~~s~~~Cq~~C~~~~~C~afT~~~~~~~C~lk~~ 57 (73)
T cd01100 10 SNVDFRGGDLSTVFASSAEQCQAACTADPGCLAFTYNTKSKKCFLKSS 57 (73)
T ss_pred CCCccccCCcceeecCCHHHHHHHcCCCCCceEEEEECCCCeEEcccC
Confidence 4555555433 22223799999999999999999994 3456999765
No 13
>smart00223 APPLE APPLE domain. Four-fold repeat in plasma kallikrein and coagulation factor XI. Factor XI apple 3 mediates binding to platelets. Factor XI apple 1 binds high-molecular-mass kininogen. Apple 4 in factor XI mediates dimer formation and binds to factor XIIa. Mutations in apple 4 cause factor XI deficiency, an inherited bleeding disorder.
Probab=91.88 E-value=0.23 Score=39.89 Aligned_cols=47 Identities=13% Similarity=0.357 Sum_probs=33.4
Q ss_pred eeeccCCCCcc-cCCCCCHHHHHHHhhccCCeEEEEe-CCCC---ceEEeec
Q 012748 343 LNKMKVPDFTE-WTSPATEDECREQCLKNCSCIAYAF-DGGI---GCMVWRS 389 (457)
Q Consensus 343 l~~~~~p~~~~-~~~~~~~~~C~~~Cl~nCsC~A~~y-~~~~---~C~~w~~ 389 (457)
+++++++..+. .....+.++|++.|..+=.|.+|.| .... .|+++..
T Consensus 6 ~~~~df~G~Dl~~~~~~~~~~Cq~~Ct~~~~C~~FTf~~~~~~~~~C~LK~s 57 (79)
T smart00223 6 YKNVDFRGSDINTVYVPSAQVCQKRCTSHPRCLFFTFSTNEPPEEKCLLKDS 57 (79)
T ss_pred ccCccccCceeeeeecCCHHHHHHhhcCCCCccEEEeeCCCCCCCEeEeCcC
Confidence 34566666554 2223379999999999999999999 3333 7999643
No 14
>PF00024 PAN_1: PAN domain This Prosite entry concerns apple domains, a subset of PAN domains; InterPro: IPR003014 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs It has been shown that, the N-terminal N domains of members of the plasminogen/hepatocyte growth factor family, the apple domains of the plasma prekallikrein/coagulation factor XI family, and domains of various nematode proteins belong to the same module superfamily, the PAN module []. PAN contains a conserved core of three disulphide bridges. In some members of the family there is an additional fourth disulphide bridge that links the N and C termini of the domain.; PDB: 1GP9_C 2QJ2_B 1GMO_H 1NK1_B 3MKP_B 1BHT_B 3HN4_A 1GMN_A 3HMS_A 3HMT_B ....
Probab=91.71 E-value=0.19 Score=39.09 Aligned_cols=50 Identities=18% Similarity=0.488 Sum_probs=36.6
Q ss_pred eEEeeeccCCCCcc-cCCCCCHHHHHHHhhccCC-eEEEEeC-CCCceEEeec
Q 012748 340 FSKLNKMKVPDFTE-WTSPATEDECREQCLKNCS-CIAYAFD-GGIGCMVWRS 389 (457)
Q Consensus 340 f~~l~~~~~p~~~~-~~~~~~~~~C~~~Cl~nCs-C~A~~y~-~~~~C~~w~~ 389 (457)
|..+.+..+..... .....++++|.+.|+.+=. |.+|.|+ ....|.+...
T Consensus 4 f~~~~~~~l~~~~~~~~~v~s~~~C~~~C~~~~~~C~s~~y~~~~~~C~L~~~ 56 (79)
T PF00024_consen 4 FERIPGYRLSGHSIKEINVPSLEECAQLCLNEPRRCKSFNYDPSSKTCYLSSS 56 (79)
T ss_dssp EEEEEEEEEESCEEEEEEESSHHHHHHHHHHSTT-ESEEEEETTTTEEEEECS
T ss_pred eEEECCEEEeCCcceEEcCCCHHHHHhhcCcCcccCCeEEEECCCCEEEEcCC
Confidence 66677766665433 2222389999999999999 9999993 3456999655
No 15
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=88.60 E-value=0.36 Score=33.49 Aligned_cols=9 Identities=44% Similarity=0.896 Sum_probs=4.2
Q ss_pred HHHHHhhhh
Q 012748 439 LFLWRWIAK 447 (457)
Q Consensus 439 ~~~~r~~~~ 447 (457)
+++|+||+|
T Consensus 32 l~~~~rR~k 40 (40)
T PF08693_consen 32 LFFWYRRKK 40 (40)
T ss_pred hheEEeccC
Confidence 444555543
No 16
>PF14295 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A.
Probab=88.36 E-value=0.45 Score=33.89 Aligned_cols=28 Identities=25% Similarity=0.748 Sum_probs=17.2
Q ss_pred CHHHHHHHhhccCCeEEEEeCC------CCceEE
Q 012748 359 TEDECREQCLKNCSCIAYAFDG------GIGCMV 386 (457)
Q Consensus 359 ~~~~C~~~Cl~nCsC~A~~y~~------~~~C~~ 386 (457)
+.++|.++|..+=.|.+|.|.. ...|+|
T Consensus 17 s~~~C~~~C~~~~~C~~~~~~~~~~~~~~~~C~L 50 (51)
T PF14295_consen 17 SPEECQAACAADPGCQAFTFNPPGCPSSSGRCYL 50 (51)
T ss_dssp -HHHHHHHHHTSTT--EEEEETTEE---------
T ss_pred CHHHHHHHccCCCCCCEEEEECCCcccccccccC
Confidence 7999999999999999999932 334776
No 17
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=87.77 E-value=0.36 Score=48.48 Aligned_cols=21 Identities=14% Similarity=0.338 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhhhhcccc
Q 012748 431 MFALAICTLFLWRWIAKRKGN 451 (457)
Q Consensus 431 ~~~~~~~~~~~~r~~~~~~~~ 451 (457)
++++.+|+|++||.|||||-+
T Consensus 268 IVLIMvIIYLILRYRRKKKmk 288 (299)
T PF02009_consen 268 IVLIMVIIYLILRYRRKKKMK 288 (299)
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 444555777788877766544
No 18
>smart00605 CW CW domain.
Probab=87.43 E-value=2.7 Score=34.52 Aligned_cols=54 Identities=17% Similarity=0.477 Sum_probs=38.8
Q ss_pred CHHHHHHHhhccCCeEEEEeCCCCceEEeecCccceeeeccC-CCeeEEEEEecC
Q 012748 359 TEDECREQCLKNCSCIAYAFDGGIGCMVWRSINLIDIQRLPF-GGTDLYIRVANS 412 (457)
Q Consensus 359 ~~~~C~~~Cl~nCsC~A~~y~~~~~C~~w~~~~l~~~~~~~~-~~~~~yikv~~s 412 (457)
+.++|-+.|..+..|..+..+....|.++.-.++..+++... .+..+=+|+..+
T Consensus 23 sw~~Ci~~C~~~~~Cvlay~~~~~~C~~f~~~~~~~v~~~~~~~~~~VAfK~~~~ 77 (94)
T smart00605 23 SWDECIQKCYEDSNCVLAYGNSSETCYLFSYGTVLTVKKLSSSSGKKVAFKVSTD 77 (94)
T ss_pred CHHHHHHHHhCCCceEEEecCCCCceEEEEcCCeEEEEEccCCCCcEEEEEEeCC
Confidence 789999999999999988765446798754314666666543 466677887643
No 19
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=87.24 E-value=0.37 Score=43.33 Aligned_cols=8 Identities=13% Similarity=-0.118 Sum_probs=4.8
Q ss_pred EEEhhhHH
Q 012748 423 FVSPLIKG 430 (457)
Q Consensus 423 i~~~v~~~ 430 (457)
|+++|+++
T Consensus 52 IGvVVGVG 59 (154)
T PF04478_consen 52 IGVVVGVG 59 (154)
T ss_pred EEEEeccc
Confidence 66666554
No 20
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=86.00 E-value=2.9 Score=32.12 Aligned_cols=38 Identities=21% Similarity=0.586 Sum_probs=29.4
Q ss_pred CHHHHHHHhhccCCeEEEEeCCCCceEEeecCccceeee
Q 012748 359 TEDECREQCLKNCSCIAYAFDGGIGCMVWRSINLIDIQR 397 (457)
Q Consensus 359 ~~~~C~~~Cl~nCsC~A~~y~~~~~C~~w~~~~l~~~~~ 397 (457)
+.++|-+.|..+=.|.++.++ ...|.++.--++..+++
T Consensus 21 sw~~Cv~~C~~~~~C~la~~~-~~~C~~y~~~~i~~v~~ 58 (71)
T PF08277_consen 21 SWDDCVQKCYNDENCVLAYFD-SGKCYLYNYGSISTVQK 58 (71)
T ss_pred CHHHHhHHhCCCCEEEEEEeC-CCCEEEEEcCCEEEEEE
Confidence 789999999999999999997 67899864313434443
No 21
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=85.12 E-value=0.36 Score=42.00 Aligned_cols=15 Identities=13% Similarity=0.211 Sum_probs=5.6
Q ss_pred HHHHHHHHHHhhhhc
Q 012748 434 LAICTLFLWRWIAKR 448 (457)
Q Consensus 434 ~~~~~~~~~r~~~~~ 448 (457)
++++.|+++|+|||.
T Consensus 81 Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 81 ILLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHhccC
Confidence 334445454444443
No 22
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=84.63 E-value=18 Score=37.42 Aligned_cols=57 Identities=21% Similarity=0.349 Sum_probs=36.9
Q ss_pred EEEEe-cCCcEEEEcC-CCeEEEeecCCCCC--CCc----eEEEEccCCCEEEEeccCCeEEEee
Q 012748 88 IITIS-EDGNLVLVNG-QKEVLWSSNVSNLV--NNS----TSAQLLDSGNLVLRDNINRAIVWES 144 (457)
Q Consensus 88 ~l~l~-~dG~L~l~d~-~~~~vWst~~~~~~--~~~----~~a~LldsGNlVl~d~~~~~~lWQS 144 (457)
.+.+. .+|.|+-.|. +|+++|+.+..+.. ... ....-..+|.|+-.|..+++++|+-
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~ 186 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTV 186 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeee
Confidence 44443 5788887785 79999998764321 111 0223345677888887678899975
No 23
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=80.65 E-value=1.3 Score=28.33 Aligned_cols=29 Identities=24% Similarity=0.630 Sum_probs=21.7
Q ss_pred CccccccCCCcccCCC-CCCccccCCCCCC
Q 012748 274 CDVYGKCGAFGICNSQ-EKPICSCLEGFEP 302 (457)
Q Consensus 274 C~~~~~CG~~giC~~~-~~~~C~C~~GF~p 302 (457)
|.....|..++.|... ....|.|++||..
T Consensus 2 C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g 31 (36)
T cd00053 2 CAASNPCSNGGTCVNTPGSYRCVCPPGYTG 31 (36)
T ss_pred CCCCCCCCCCCEEecCCCCeEeECCCCCcc
Confidence 4435678888999764 3578999999964
No 24
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=79.19 E-value=0.63 Score=32.38 Aligned_cols=31 Identities=32% Similarity=0.657 Sum_probs=24.7
Q ss_pred CCCccc-cccCCCcccCCC-CCCccccCCCCCC
Q 012748 272 TECDVY-GKCGAFGICNSQ-EKPICSCLEGFEP 302 (457)
Q Consensus 272 d~C~~~-~~CG~~giC~~~-~~~~C~C~~GF~p 302 (457)
|+|... ..|..++.|... ++-.|.|++||+.
T Consensus 3 dEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~ 35 (42)
T PF07645_consen 3 DECAEGPHNCPENGTCVNTEGSYSCSCPPGYEL 35 (42)
T ss_dssp STTTTTSSSSSTTSEEEEETTEEEEEESTTEEE
T ss_pred cccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEE
Confidence 678774 489999999753 4568999999983
No 25
>cd01099 PAN_AP_HGF Subfamily of PAN/APPLE-like domains; present in N-terminal (N) domains of plasminogen/hepatocyte growth factor proteins, and various proteins found in Bilateria, such as leech anti-platelet proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=78.01 E-value=6.8 Score=31.14 Aligned_cols=31 Identities=19% Similarity=0.652 Sum_probs=25.6
Q ss_pred CHHHHHHHhhc--cCCeEEEEe-CCCCceEEeec
Q 012748 359 TEDECREQCLK--NCSCIAYAF-DGGIGCMVWRS 389 (457)
Q Consensus 359 ~~~~C~~~Cl~--nCsC~A~~y-~~~~~C~~w~~ 389 (457)
+.++|.++|++ +=.|.+|.| .....|.+-..
T Consensus 26 s~~~C~~~C~~~~~f~CrSf~y~~~~~~C~L~~~ 59 (80)
T cd01099 26 SLEECLRKCLEETEFTCRSFNYNYKSKECILSDE 59 (80)
T ss_pred CHHHHHHHhCCCCCceEeEEEEEcCCCEEEEeCC
Confidence 79999999999 999999999 33456988444
No 26
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=75.96 E-value=2.2 Score=30.93 Aligned_cols=34 Identities=18% Similarity=0.499 Sum_probs=27.8
Q ss_pred eecCCCCccccccCCCcccCCCCCCccccCCCCCCCC
Q 012748 268 LNLRTECDVYGKCGAFGICNSQEKPICSCLEGFEPKN 304 (457)
Q Consensus 268 ~~p~d~C~~~~~CG~~giC~~~~~~~C~C~~GF~p~~ 304 (457)
..|.+.|....-|-.+++|.. ..|.|++||.+..
T Consensus 16 ~~~g~~C~~~~qC~~~s~C~~---g~C~C~~g~~~~~ 49 (52)
T PF01683_consen 16 VQPGESCESDEQCIGGSVCVN---GRCQCPPGYVEVG 49 (52)
T ss_pred CCCCCCCCCcCCCCCcCEEcC---CEeECCCCCEecC
Confidence 446678999999999999954 6899999997653
No 27
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=75.19 E-value=1.8 Score=38.44 Aligned_cols=29 Identities=14% Similarity=0.057 Sum_probs=15.6
Q ss_pred EhhhHHHHHHHHHHHHHHHhhhhcccccc
Q 012748 425 SPLIKGMFALAICTLFLWRWIAKRKGNVL 453 (457)
Q Consensus 425 ~~v~~~~~~~~~~~~~~~r~~~~~~~~~~ 453 (457)
+.+++++++++|++++.|..+||||+-+.
T Consensus 34 ILiaIvVliiiiivli~lcssRKkKaaAA 62 (189)
T PF05568_consen 34 ILIAIVVLIIIIIVLIYLCSSRKKKAAAA 62 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHhh
Confidence 33444444445555566666666665544
No 28
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=74.39 E-value=2.6 Score=27.88 Aligned_cols=30 Identities=27% Similarity=0.629 Sum_probs=22.4
Q ss_pred CCCccccccCCCcccCCC-CCCccccCCCCC
Q 012748 272 TECDVYGKCGAFGICNSQ-EKPICSCLEGFE 301 (457)
Q Consensus 272 d~C~~~~~CG~~giC~~~-~~~~C~C~~GF~ 301 (457)
++|.....|...+.|... +...|.|++||.
T Consensus 3 ~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~ 33 (39)
T smart00179 3 DECASGNPCQNGGTCVNTVGSYRCECPPGYT 33 (39)
T ss_pred ccCcCCCCcCCCCEeECCCCCeEeECCCCCc
Confidence 567654578888899754 345799999996
No 29
>PF15050 SCIMP: SCIMP protein
Probab=73.99 E-value=2.7 Score=36.20 Aligned_cols=28 Identities=14% Similarity=0.223 Sum_probs=18.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhcccccc
Q 012748 426 PLIKGMFALAICTLFLWRWIAKRKGNVL 453 (457)
Q Consensus 426 ~v~~~~~~~~~~~~~~~r~~~~~~~~~~ 453 (457)
+|+++.+++++|+||++|++.|+.|+-+
T Consensus 15 aII~vS~~lglIlyCvcR~~lRqGkkwe 42 (133)
T PF15050_consen 15 AIILVSVVLGLILYCVCRWQLRQGKKWE 42 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccce
Confidence 3333356678888988888777666544
No 30
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=69.68 E-value=2.7 Score=28.06 Aligned_cols=18 Identities=28% Similarity=0.654 Sum_probs=13.8
Q ss_pred ccCCCCCCccccCCCCCC
Q 012748 285 ICNSQEKPICSCLEGFEP 302 (457)
Q Consensus 285 iC~~~~~~~C~C~~GF~p 302 (457)
.|+.+...+|.||.||..
T Consensus 11 ~CDpn~~~~C~CPeGyIl 28 (34)
T PF09064_consen 11 DCDPNSPGQCFCPEGYIL 28 (34)
T ss_pred ccCCCCCCceeCCCceEe
Confidence 565555678999999965
No 31
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=69.02 E-value=3.1 Score=28.47 Aligned_cols=9 Identities=11% Similarity=-0.064 Sum_probs=4.0
Q ss_pred HHHhhhhcc
Q 012748 441 LWRWIAKRK 449 (457)
Q Consensus 441 ~~r~~~~~~ 449 (457)
.++||.+++
T Consensus 28 Ccykk~~~~ 36 (38)
T PF02439_consen 28 CCYKKHRRQ 36 (38)
T ss_pred HHHcccccc
Confidence 444444433
No 32
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=68.54 E-value=4.1 Score=26.38 Aligned_cols=30 Identities=30% Similarity=0.651 Sum_probs=21.8
Q ss_pred CCCccccccCCCcccCCC-CCCccccCCCCC
Q 012748 272 TECDVYGKCGAFGICNSQ-EKPICSCLEGFE 301 (457)
Q Consensus 272 d~C~~~~~CG~~giC~~~-~~~~C~C~~GF~ 301 (457)
++|.....|...+.|... +...|.|++||.
T Consensus 3 ~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~ 33 (38)
T cd00054 3 DECASGNPCQNGGTCVNTVGSYRCSCPPGYT 33 (38)
T ss_pred ccCCCCCCcCCCCEeECCCCCeEeECCCCCc
Confidence 567654568888899754 345799999985
No 33
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=68.47 E-value=5.7 Score=32.34 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHhhhhccc
Q 012748 429 KGMFALAICTLFLWRWIAKRKG 450 (457)
Q Consensus 429 ~~~~~~~~~~~~~~r~~~~~~~ 450 (457)
.+++++.+++++.+.+||||.|
T Consensus 41 ~~iFil~VilwfvCC~kRkrsR 62 (94)
T PF05393_consen 41 CGIFILLVILWFVCCKKRKRSR 62 (94)
T ss_pred HHHHHHHHHHHHHHHHHhhhcc
Confidence 3355666666775555555544
No 34
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=68.36 E-value=4.3 Score=26.72 Aligned_cols=24 Identities=29% Similarity=0.685 Sum_probs=19.0
Q ss_pred cccCCCcccCCCCCCccccCCCCCC
Q 012748 278 GKCGAFGICNSQEKPICSCLEGFEP 302 (457)
Q Consensus 278 ~~CG~~giC~~~~~~~C~C~~GF~p 302 (457)
.+|...|.|... ...|.|.+||.-
T Consensus 6 ~~C~~~G~C~~~-~g~C~C~~g~~G 29 (32)
T PF07974_consen 6 NICSGHGTCVSP-CGRCVCDSGYTG 29 (32)
T ss_pred CccCCCCEEeCC-CCEEECCCCCcC
Confidence 478999999753 468999999863
No 35
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=68.34 E-value=1.6 Score=43.56 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhcccc
Q 012748 431 MFALAICTLFLWRWIAKRKGN 451 (457)
Q Consensus 431 ~~~~~~~~~~~~r~~~~~~~~ 451 (457)
++|+++|++|++||||+-|..
T Consensus 159 LLIA~iIa~icyrrkR~GK~~ 179 (290)
T PF05454_consen 159 LLIAGIIACICYRRKRKGKMS 179 (290)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHhhhhhhccccc
Confidence 555666666677755554443
No 36
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=65.44 E-value=1.4 Score=23.06 Aligned_cols=9 Identities=33% Similarity=1.106 Sum_probs=6.6
Q ss_pred ccccCCCCC
Q 012748 293 ICSCLEGFE 301 (457)
Q Consensus 293 ~C~C~~GF~ 301 (457)
.|.|++||.
T Consensus 1 ~C~C~~G~~ 9 (13)
T PF12661_consen 1 TCQCPPGWT 9 (13)
T ss_dssp EEEE-TTEE
T ss_pred CccCcCCCc
Confidence 489999985
No 37
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=64.35 E-value=3.2 Score=42.49 Aligned_cols=8 Identities=38% Similarity=1.053 Sum_probs=5.3
Q ss_pred CCccccCC
Q 012748 291 KPICSCLE 298 (457)
Q Consensus 291 ~~~C~C~~ 298 (457)
-|+|.|-+
T Consensus 126 IPTCvCEK 133 (353)
T TIGR01477 126 IPTCVCEK 133 (353)
T ss_pred Cccccccc
Confidence 47777754
No 38
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=64.25 E-value=26 Score=35.73 Aligned_cols=20 Identities=25% Similarity=0.635 Sum_probs=10.8
Q ss_pred cCCcEEEEc-CCCeEEEeecC
Q 012748 93 EDGNLVLVN-GQKEVLWSSNV 112 (457)
Q Consensus 93 ~dG~L~l~d-~~~~~vWst~~ 112 (457)
.+|.|+-.| .+|+++|+...
T Consensus 73 ~~g~v~a~d~~tG~~~W~~~~ 93 (377)
T TIGR03300 73 ADGTVVALDAETGKRLWRVDL 93 (377)
T ss_pred CCCeEEEEEccCCcEeeeecC
Confidence 345555555 35666666543
No 39
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=63.24 E-value=7.6 Score=33.05 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhhhhccccc
Q 012748 431 MFALAICTLFLWRWIAKRKGNV 452 (457)
Q Consensus 431 ~~~~~~~~~~~~r~~~~~~~~~ 452 (457)
++|+++..++.||.++|++|..
T Consensus 11 Lll~l~asl~~wr~~~rq~k~~ 32 (107)
T PF15330_consen 11 LLLSLAASLLAWRMKQRQKKAG 32 (107)
T ss_pred HHHHHHHHHHHHHHHhhhcccc
Confidence 4455556677888887777654
No 40
>PTZ00046 rifin; Provisional
Probab=62.96 E-value=5.2 Score=41.08 Aligned_cols=18 Identities=17% Similarity=0.397 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHhhhhcc
Q 012748 432 FALAICTLFLWRWIAKRK 449 (457)
Q Consensus 432 ~~~~~~~~~~~r~~~~~~ 449 (457)
+++.+|+|++.|.|||+|
T Consensus 328 VLIMvIIYLILRYRRKKK 345 (358)
T PTZ00046 328 VLIMVIIYLILRYRRKKK 345 (358)
T ss_pred HHHHHHHHHHHHhhhcch
Confidence 333445555555444444
No 41
>PHA03265 envelope glycoprotein D; Provisional
Probab=62.83 E-value=6.3 Score=40.09 Aligned_cols=24 Identities=8% Similarity=-0.018 Sum_probs=15.4
Q ss_pred EEEhhhHH-HHHHHHHHHHHHHhhh
Q 012748 423 FVSPLIKG-MFALAICTLFLWRWIA 446 (457)
Q Consensus 423 i~~~v~~~-~~~~~~~~~~~~r~~~ 446 (457)
+++..+++ +++++.|+|++||||+
T Consensus 352 ~~ig~~i~glv~vg~il~~~~rr~k 376 (402)
T PHA03265 352 ISVGLGIAGLVLVGVILYVCLRRKK 376 (402)
T ss_pred eEEccchhhhhhhhHHHHHHhhhhh
Confidence 34433333 6777778888888773
No 42
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=62.63 E-value=4 Score=38.11 Aligned_cols=26 Identities=23% Similarity=0.583 Sum_probs=15.2
Q ss_pred EEEhhhHHHHHHHHHHHHHHHhhhhc
Q 012748 423 FVSPLIKGMFALAICTLFLWRWIAKR 448 (457)
Q Consensus 423 i~~~v~~~~~~~~~~~~~~~r~~~~~ 448 (457)
|++.+++++++++++++++|+||+||
T Consensus 162 I~lPvvv~~~~~~~~~~~~~~R~~Rr 187 (189)
T PF14610_consen 162 IALPVVVVVLALIMYGFFFWNRKKRR 187 (189)
T ss_pred EEccHHHHHHHHHHHhhheeecccee
Confidence 55566555555556666666555544
No 43
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=61.88 E-value=22 Score=36.75 Aligned_cols=63 Identities=11% Similarity=0.254 Sum_probs=37.3
Q ss_pred CCCCCCCcEEEEecCCcEEEEcC-CCeEEEeecCCCC-------------CC-----CceEEEEccCCCEEEEeccCCeE
Q 012748 80 NPLKDSSGIITISEDGNLVLVNG-QKEVLWSSNVSNL-------------VN-----NSTSAQLLDSGNLVLRDNINRAI 140 (457)
Q Consensus 80 ~Pv~~~~~~l~l~~dG~L~l~d~-~~~~vWst~~~~~-------------~~-----~~~~a~LldsGNlVl~d~~~~~~ 140 (457)
.|+...+-....+.+|.|+=+|. +|+++|+...... .+ .. +..-..+|+|+-.|..+++.
T Consensus 64 sPvv~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-v~v~~~~g~l~ald~~tG~~ 142 (394)
T PRK11138 64 HPAVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGK-VYIGSEKGQVYALNAEDGEV 142 (394)
T ss_pred ccEEECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCE-EEEEcCCCEEEEEECCCCCC
Confidence 34443222233445677776775 6999999875431 00 01 12234678888888667889
Q ss_pred EEe
Q 012748 141 VWE 143 (457)
Q Consensus 141 lWQ 143 (457)
+|+
T Consensus 143 ~W~ 145 (394)
T PRK11138 143 AWQ 145 (394)
T ss_pred ccc
Confidence 996
No 44
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=61.17 E-value=5.3 Score=39.59 Aligned_cols=14 Identities=14% Similarity=0.752 Sum_probs=7.4
Q ss_pred HHHHHHHHHhhhhc
Q 012748 435 AICTLFLWRWIAKR 448 (457)
Q Consensus 435 ~~~~~~~~r~~~~~ 448 (457)
++|++++|-.|||+
T Consensus 274 vliiLYiWlyrrRK 287 (295)
T TIGR01478 274 VLIILYIWLYRRRK 287 (295)
T ss_pred HHHHHHHHHHHhhc
Confidence 34555566655544
No 45
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=60.80 E-value=4 Score=25.13 Aligned_cols=11 Identities=36% Similarity=0.999 Sum_probs=9.5
Q ss_pred ccccCCCCCCC
Q 012748 293 ICSCLEGFEPK 303 (457)
Q Consensus 293 ~C~C~~GF~p~ 303 (457)
.|+|++||+..
T Consensus 3 ~C~C~~Gy~l~ 13 (24)
T PF12662_consen 3 TCSCPPGYQLS 13 (24)
T ss_pred EeeCCCCCcCC
Confidence 69999999864
No 46
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=60.05 E-value=37 Score=33.70 Aligned_cols=47 Identities=21% Similarity=0.405 Sum_probs=35.6
Q ss_pred CCCeEEEEecCCCCCCCC----CcEEEE-ecCCcEEEEcCCCeEEEeecCCC
Q 012748 68 SEKAVIWVANRDNPLKDS----SGIITI-SEDGNLVLVNGQKEVLWSSNVSN 114 (457)
Q Consensus 68 ~~~tvVW~ANr~~Pv~~~----~~~l~l-~~dG~L~l~d~~~~~vWst~~~~ 114 (457)
.+.+..|-|.|..|+-.+ +..+.+ +-||+|.-.|+.|+.||...+.+
T Consensus 167 ~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~sG~qvwr~~t~G 218 (354)
T KOG4649|consen 167 YSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDESGRQVWRPATKG 218 (354)
T ss_pred CCcceehhhhcCCccccCceeccceEEEEEeccEEEEEcCCCcEEEeecCCC
Confidence 345899999999999754 123444 47999998999999999866543
No 47
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=59.95 E-value=21 Score=33.30 Aligned_cols=51 Identities=22% Similarity=0.372 Sum_probs=31.6
Q ss_pred CCcEEEEcC-CCeEEEeecCCCCCCCce---------EEEEccCCCEEEEeccCCeEEEee
Q 012748 94 DGNLVLVNG-QKEVLWSSNVSNLVNNST---------SAQLLDSGNLVLRDNINRAIVWES 144 (457)
Q Consensus 94 dG~L~l~d~-~~~~vWst~~~~~~~~~~---------~a~LldsGNlVl~d~~~~~~lWQS 144 (457)
+|.|...|. +|+.+|+.+......... ......+|+|+..|..+++.+|+-
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~ 62 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRF 62 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEe
Confidence 678888887 899999986521111110 111236677777775577888875
No 48
>PTZ00370 STEVOR; Provisional
Probab=59.29 E-value=5.9 Score=39.31 Aligned_cols=14 Identities=14% Similarity=0.752 Sum_probs=7.4
Q ss_pred HHHHHHHHHhhhhc
Q 012748 435 AICTLFLWRWIAKR 448 (457)
Q Consensus 435 ~~~~~~~~r~~~~~ 448 (457)
+++++++|-.|||+
T Consensus 270 vliilYiwlyrrRK 283 (296)
T PTZ00370 270 VLIILYIWLYRRRK 283 (296)
T ss_pred HHHHHHHHHHHhhc
Confidence 34555566655544
No 49
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=55.63 E-value=60 Score=33.06 Aligned_cols=55 Identities=20% Similarity=0.338 Sum_probs=35.7
Q ss_pred EEEecCCcEEEEcC-CCeEEEeecCCCCC-----CCceEEEEccCCCEEEEeccCCeEEEee
Q 012748 89 ITISEDGNLVLVNG-QKEVLWSSNVSNLV-----NNSTSAQLLDSGNLVLRDNINRAIVWES 144 (457)
Q Consensus 89 l~l~~dG~L~l~d~-~~~~vWst~~~~~~-----~~~~~a~LldsGNlVl~d~~~~~~lWQS 144 (457)
+..+.+|.|+..|. +|+.+|........ ... .....++|.++..|..+++.+|+.
T Consensus 245 y~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~~~~~-vyv~~~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 245 YAVSYQGRVAALDLRSGRVLWKRDASSYQGPAVDDNR-LYVTDADGVVVALDRRSGSELWKN 305 (377)
T ss_pred EEEEcCCEEEEEECCCCcEEEeeccCCccCceEeCCE-EEEECCCCeEEEEECCCCcEEEcc
Confidence 34456888888886 78899988643211 112 223456788888877567788873
No 50
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=55.00 E-value=66 Score=29.91 Aligned_cols=75 Identities=21% Similarity=0.438 Sum_probs=45.2
Q ss_pred CCeEEEEecC----CCCC----CCCCcEEEE-ecCCcEEEEcC-CCeEEEeecCCCCCC------CceEEEEccCCCEEE
Q 012748 69 EKAVIWVANR----DNPL----KDSSGIITI-SEDGNLVLVNG-QKEVLWSSNVSNLVN------NSTSAQLLDSGNLVL 132 (457)
Q Consensus 69 ~~tvVW~ANr----~~Pv----~~~~~~l~l-~~dG~L~l~d~-~~~~vWst~~~~~~~------~~~~a~LldsGNlVl 132 (457)
....+|..+- ..++ .+ +..+.+ +.+|.|+..|. +|+.+|+........ .........+|.|+.
T Consensus 12 tG~~~W~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~ 90 (238)
T PF13360_consen 12 TGKELWSYDLGPGIGGPVATAVPD-GGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYA 90 (238)
T ss_dssp TTEEEEEEECSSSCSSEEETEEEE-TTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEE
T ss_pred CCCEEEEEECCCCCCCccceEEEe-CCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEe
Confidence 5567787643 2222 12 233333 58899999996 899999988643211 110222334556777
Q ss_pred EeccCCeEEEee
Q 012748 133 RDNINRAIVWES 144 (457)
Q Consensus 133 ~d~~~~~~lWQS 144 (457)
.|..+++++|+.
T Consensus 91 ~d~~tG~~~W~~ 102 (238)
T PF13360_consen 91 LDAKTGKVLWSI 102 (238)
T ss_dssp EETTTSCEEEEE
T ss_pred cccCCcceeeee
Confidence 774488999995
No 51
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=53.40 E-value=4.2 Score=31.20 Aligned_cols=20 Identities=25% Similarity=0.612 Sum_probs=0.6
Q ss_pred HHHHHHHHHHHHHhhhhccc
Q 012748 431 MFALAICTLFLWRWIAKRKG 450 (457)
Q Consensus 431 ~~~~~~~~~~~~r~~~~~~~ 450 (457)
++++++++|+++|.|+|..+
T Consensus 23 l~ailLIlf~iyR~rkkdEG 42 (64)
T PF01034_consen 23 LFAILLILFLIYRMRKKDEG 42 (64)
T ss_dssp --------------S-----
T ss_pred HHHHHHHHHHHHHHHhcCCC
Confidence 34444556667776655443
No 52
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=52.86 E-value=3.3 Score=41.74 Aligned_cols=18 Identities=6% Similarity=0.217 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHhhhhc
Q 012748 431 MFALAICTLFLWRWIAKR 448 (457)
Q Consensus 431 ~~~~~~~~~~~~r~~~~~ 448 (457)
++|++++.|++.|||+++
T Consensus 284 lvlivLiaYli~Rrr~~~ 301 (306)
T PF01299_consen 284 LVLIVLIAYLIGRRRSRA 301 (306)
T ss_pred HHHHHHHhheeEeccccc
Confidence 333444555555555444
No 53
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=52.30 E-value=24 Score=29.24 Aligned_cols=33 Identities=12% Similarity=0.342 Sum_probs=22.3
Q ss_pred CCCCeEEEEecCCCCCCCCCcEEEEecCCcEEEE
Q 012748 67 PSEKAVIWVANRDNPLKDSSGIITISEDGNLVLV 100 (457)
Q Consensus 67 ~~~~tvVW~ANr~~Pv~~~~~~l~l~~dG~L~l~ 100 (457)
.|..++.|+-+....+. ....+.++.+|+|.+.
T Consensus 31 ~P~P~i~W~~~~~~~i~-~~~Ri~~~~~GnL~fs 63 (95)
T cd05845 31 AVPLRIYWMNSDLLHIT-QDERVSMGQNGNLYFA 63 (95)
T ss_pred CCCCEEEEECCCCcccc-ccccEEECCCceEEEE
Confidence 45678889844444444 3567888888888874
No 54
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=49.55 E-value=18 Score=31.59 Aligned_cols=25 Identities=16% Similarity=-0.037 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcccc
Q 012748 427 LIKGMFALAICTLFLWRWIAKRKGN 451 (457)
Q Consensus 427 v~~~~~~~~~~~~~~~r~~~~~~~~ 451 (457)
+++.+-++++|+++++..||+|||.
T Consensus 71 ~gv~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 71 FGVMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3333566788888899999999986
No 55
>smart00181 EGF Epidermal growth factor-like domain.
Probab=49.54 E-value=13 Score=23.90 Aligned_cols=24 Identities=29% Similarity=0.686 Sum_probs=17.5
Q ss_pred cccCCCcccCCC-CCCccccCCCCCC
Q 012748 278 GKCGAFGICNSQ-EKPICSCLEGFEP 302 (457)
Q Consensus 278 ~~CG~~giC~~~-~~~~C~C~~GF~p 302 (457)
..|... .|... +...|.|++||.-
T Consensus 6 ~~C~~~-~C~~~~~~~~C~C~~g~~g 30 (35)
T smart00181 6 GPCSNG-TCINTPGSYTCSCPPGYTG 30 (35)
T ss_pred CCCCCC-EEECCCCCeEeECCCCCcc
Confidence 456666 78654 4678999999964
No 56
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=49.24 E-value=3.4 Score=27.93 Aligned_cols=25 Identities=28% Similarity=0.760 Sum_probs=17.6
Q ss_pred ccccCCCcccCCC-CCCccccCCCCC
Q 012748 277 YGKCGAFGICNSQ-EKPICSCLEGFE 301 (457)
Q Consensus 277 ~~~CG~~giC~~~-~~~~C~C~~GF~ 301 (457)
.+-|.++..|... +.-.|.|.+||.
T Consensus 5 ~~~C~~nA~C~~~~~~~~C~C~~Gy~ 30 (36)
T PF12947_consen 5 NGGCHPNATCTNTGGSYTCTCKPGYE 30 (36)
T ss_dssp GGGS-TTCEEEE-TTSEEEEE-CEEE
T ss_pred CCCCCCCcEeecCCCCEEeECCCCCc
Confidence 4578999999764 356899999986
No 57
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=49.23 E-value=53 Score=35.25 Aligned_cols=75 Identities=23% Similarity=0.307 Sum_probs=46.3
Q ss_pred CCCeEEEEecCC-------CCCCCCCcEEEE-ecCCcEEEEcC-CCeEEEeecCCCC--------CC--------CceEE
Q 012748 68 SEKAVIWVANRD-------NPLKDSSGIITI-SEDGNLVLVNG-QKEVLWSSNVSNL--------VN--------NSTSA 122 (457)
Q Consensus 68 ~~~tvVW~ANr~-------~Pv~~~~~~l~l-~~dG~L~l~d~-~~~~vWst~~~~~--------~~--------~~~~a 122 (457)
...+++|..+-. .|+.. .+++.+ +.+|.|+-+|. +|+++|+...... .. .. +.
T Consensus 37 ~~~~~~W~~~~~~~~~~~~sPvv~-~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~-V~ 114 (488)
T cd00216 37 KKLKVAWTFSTGDERGQEGTPLVV-DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRK-VF 114 (488)
T ss_pred hcceeeEEEECCCCCCcccCCEEE-CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCe-EE
Confidence 445778887643 35543 244444 45798887785 7899999765321 00 01 11
Q ss_pred EEccCCCEEEEeccCCeEEEee
Q 012748 123 QLLDSGNLVLRDNINRAIVWES 144 (457)
Q Consensus 123 ~LldsGNlVl~d~~~~~~lWQS 144 (457)
.-..+|.++-.|..+++.+|+-
T Consensus 115 v~~~~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 115 FGTFDGRLVALDAETGKQVWKF 136 (488)
T ss_pred EecCCCeEEEEECCCCCEeeee
Confidence 1224678887887678999983
No 58
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=48.95 E-value=26 Score=24.41 Aligned_cols=19 Identities=32% Similarity=0.630 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHhhhhcc
Q 012748 431 MFALAICTLFLWRWIAKRK 449 (457)
Q Consensus 431 ~~~~~~~~~~~~r~~~~~~ 449 (457)
++.++++..+++|+-..||
T Consensus 19 lv~i~iva~~iYRKw~aRk 37 (43)
T PF08114_consen 19 LVGIGIVALFIYRKWQARK 37 (43)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444555443333
No 59
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=48.79 E-value=24 Score=38.92 Aligned_cols=8 Identities=13% Similarity=0.019 Sum_probs=3.6
Q ss_pred EEEEecCC
Q 012748 406 YIRVANSD 413 (457)
Q Consensus 406 yikv~~s~ 413 (457)
|.|.+...
T Consensus 254 v~~~a~P~ 261 (684)
T PF12877_consen 254 VEKQAEPP 261 (684)
T ss_pred cccccCCC
Confidence 44554443
No 60
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=47.47 E-value=4.6 Score=26.37 Aligned_cols=23 Identities=26% Similarity=0.644 Sum_probs=17.4
Q ss_pred ccCCCcccCCC--CCCccccCCCCC
Q 012748 279 KCGAFGICNSQ--EKPICSCLEGFE 301 (457)
Q Consensus 279 ~CG~~giC~~~--~~~~C~C~~GF~ 301 (457)
.|...|.|... ....|.|++||.
T Consensus 5 ~C~n~g~C~~~~~~~y~C~C~~G~~ 29 (32)
T PF00008_consen 5 PCQNGGTCIDLPGGGYTCECPPGYT 29 (32)
T ss_dssp SSTTTEEEEEESTSEEEEEEBTTEE
T ss_pred cCCCCeEEEeCCCCCEEeECCCCCc
Confidence 67777888642 457899999985
No 61
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=46.39 E-value=13 Score=43.64 Aligned_cols=22 Identities=27% Similarity=0.753 Sum_probs=15.7
Q ss_pred EEEhhhHHHHHHHHHHHHHHHh
Q 012748 423 FVSPLIKGMFALAICTLFLWRW 444 (457)
Q Consensus 423 i~~~v~~~~~~~~~~~~~~~r~ 444 (457)
|++++++++|++++|++++||.
T Consensus 981 Ii~svl~GLLlL~llv~~LwK~ 1002 (1030)
T KOG3637|consen 981 IILSVLGGLLLLALLVLLLWKC 1002 (1030)
T ss_pred ehHHHHHHHHHHHHHHHHHHhc
Confidence 3334444588888899999993
No 62
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=44.43 E-value=14 Score=30.79 Aligned_cols=8 Identities=25% Similarity=0.588 Sum_probs=5.0
Q ss_pred cCCCCCCC
Q 012748 296 CLEGFEPK 303 (457)
Q Consensus 296 C~~GF~p~ 303 (457)
|.+|+.|.
T Consensus 9 C~~g~~~~ 16 (96)
T PTZ00382 9 CDSDKKPN 16 (96)
T ss_pred CCCCCccC
Confidence 66777653
No 63
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=43.92 E-value=34 Score=21.36 Aligned_cols=21 Identities=14% Similarity=0.344 Sum_probs=15.5
Q ss_pred EEEEecCCcEEEEcCCCeEEE
Q 012748 88 IITISEDGNLVLVNGQKEVLW 108 (457)
Q Consensus 88 ~l~l~~dG~L~l~d~~~~~vW 108 (457)
-+.++.+|++++.|.++.-||
T Consensus 6 gvav~~~g~i~VaD~~n~rV~ 26 (28)
T PF01436_consen 6 GVAVDSDGNIYVADSGNHRVQ 26 (28)
T ss_dssp EEEEETTSEEEEEECCCTEEE
T ss_pred EEEEeCCCCEEEEECCCCEEE
Confidence 367778899988887665554
No 64
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=43.91 E-value=19 Score=34.17 Aligned_cols=23 Identities=9% Similarity=-0.171 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhhhhcccccc
Q 012748 431 MFALAICTLFLWRWIAKRKGNVL 453 (457)
Q Consensus 431 ~~~~~~~~~~~~r~~~~~~~~~~ 453 (457)
++++++.+|++|.||..+++..+
T Consensus 114 la~~~~~~Y~~~~Rrs~~~~~~r 136 (202)
T PF06365_consen 114 LAILLGAGYCCHQRRSWSKKGQR 136 (202)
T ss_pred HHHHHHHHHHhhhhccCCcchhh
Confidence 33344566778877776665543
No 65
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=43.41 E-value=14 Score=30.17 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHhhhhccccccc
Q 012748 431 MFALAICTLFLWRWIAKRKGNVLV 454 (457)
Q Consensus 431 ~~~~~~~~~~~~r~~~~~~~~~~~ 454 (457)
.++++++++++||-++=++++.+|
T Consensus 12 ~v~~~i~~y~~~k~~ka~~~~~kL 35 (87)
T PF10883_consen 12 AVVALILAYLWWKVKKAKKQNAKL 35 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666778888888777666554
No 66
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=42.50 E-value=7.4 Score=33.26 Aligned_cols=10 Identities=10% Similarity=-0.114 Sum_probs=1.1
Q ss_pred hhhHHHHHHH
Q 012748 426 PLIKGMFALA 435 (457)
Q Consensus 426 ~v~~~~~~~~ 435 (457)
.|++.++|++
T Consensus 28 GIGiL~VILg 37 (118)
T PF14991_consen 28 GIGILIVILG 37 (118)
T ss_dssp SSS-------
T ss_pred cceeHHHHHH
Confidence 3333333333
No 67
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=42.09 E-value=31 Score=34.50 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHhhhhccccc
Q 012748 431 MFALAICTLFLWRWIAKRKGNV 452 (457)
Q Consensus 431 ~~~~~~~~~~~~r~~~~~~~~~ 452 (457)
+++++++.+++-|.+|||.+..
T Consensus 241 v~ll~l~Gii~~~~~r~~~~~~ 262 (281)
T PF12768_consen 241 VFLLVLIGIILAYIRRRRQGYV 262 (281)
T ss_pred HHHHHHHHHHHHHHHhhhccCc
Confidence 4455555555666555555443
No 68
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=39.65 E-value=36 Score=43.07 Aligned_cols=26 Identities=27% Similarity=0.534 Sum_probs=19.5
Q ss_pred cccCCCcccCCCC--CCccccCCCCCCC
Q 012748 278 GKCGAFGICNSQE--KPICSCLEGFEPK 303 (457)
Q Consensus 278 ~~CG~~giC~~~~--~~~C~C~~GF~p~ 303 (457)
..|---|.|+..+ .-+|.||+.|.-.
T Consensus 3870 npCqhgG~C~~~~~ggy~CkCpsqysG~ 3897 (4289)
T KOG1219|consen 3870 NPCQHGGTCISQPKGGYKCKCPSQYSGN 3897 (4289)
T ss_pred CcccCCCEecCCCCCceEEeCcccccCc
Confidence 5688888997653 4579999988643
No 69
>PF15345 TMEM51: Transmembrane protein 51
Probab=37.80 E-value=43 Score=32.32 Aligned_cols=6 Identities=17% Similarity=0.041 Sum_probs=2.5
Q ss_pred EhhhHH
Q 012748 425 SPLIKG 430 (457)
Q Consensus 425 ~~v~~~ 430 (457)
+.|+++
T Consensus 63 VLVG~G 68 (233)
T PF15345_consen 63 VLVGSG 68 (233)
T ss_pred ehhhHH
Confidence 344444
No 70
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=32.67 E-value=20 Score=36.19 Aligned_cols=25 Identities=16% Similarity=0.034 Sum_probs=12.7
Q ss_pred EhhhHHHHHHHHHHHHHHHhhhhcc
Q 012748 425 SPLIKGMFALAICTLFLWRWIAKRK 449 (457)
Q Consensus 425 ~~v~~~~~~~~~~~~~~~r~~~~~~ 449 (457)
++|++++++++.+++-++|+|+.+|
T Consensus 265 IliIVLIMvIIYLILRYRRKKKmkK 289 (299)
T PF02009_consen 265 ILIIVLIMVIIYLILRYRRKKKMKK 289 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 3455564444444455666554444
No 71
>PF12669 P12: Virus attachment protein p12 family
Probab=31.87 E-value=53 Score=24.66 Aligned_cols=10 Identities=10% Similarity=-0.253 Sum_probs=4.7
Q ss_pred HHHHHHhhhh
Q 012748 438 TLFLWRWIAK 447 (457)
Q Consensus 438 ~~~~~r~~~~ 447 (457)
+.-++|.+++
T Consensus 17 ~r~~~k~~K~ 26 (58)
T PF12669_consen 17 IRKFIKDKKK 26 (58)
T ss_pred HHHHHHHhhc
Confidence 3445555443
No 72
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=31.43 E-value=42 Score=33.40 Aligned_cols=10 Identities=20% Similarity=0.215 Sum_probs=3.7
Q ss_pred HHHHHHHhhh
Q 012748 437 CTLFLWRWIA 446 (457)
Q Consensus 437 ~~~~~~r~~~ 446 (457)
++++.-|.||
T Consensus 232 lv~~~vr~kr 241 (278)
T PF06697_consen 232 LVAMLVRYKR 241 (278)
T ss_pred HHHhhhhhhH
Confidence 3333333333
No 73
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=31.16 E-value=16 Score=31.85 Aligned_cols=8 Identities=25% Similarity=0.871 Sum_probs=0.0
Q ss_pred HHHHHHhh
Q 012748 438 TLFLWRWI 445 (457)
Q Consensus 438 ~~~~~r~~ 445 (457)
++++|||.
T Consensus 97 g~lv~rrc 104 (129)
T PF12191_consen 97 GFLVWRRC 104 (129)
T ss_dssp --------
T ss_pred HHHHHhhh
Confidence 34444433
No 74
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=30.25 E-value=4e+02 Score=26.73 Aligned_cols=14 Identities=43% Similarity=0.475 Sum_probs=10.5
Q ss_pred EEEEccCCCEEEEe
Q 012748 121 SAQLLDSGNLVLRD 134 (457)
Q Consensus 121 ~a~LldsGNlVl~d 134 (457)
.+++|.+||..+-.
T Consensus 264 ~~Q~L~nGn~li~~ 277 (299)
T PF14269_consen 264 SAQRLPNGNVLIGW 277 (299)
T ss_pred cceECCCCCEEEec
Confidence 56788888888743
No 75
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=28.98 E-value=36 Score=37.52 Aligned_cols=18 Identities=33% Similarity=0.748 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHhhhhc
Q 012748 431 MFALAICTLFLWRWIAKR 448 (457)
Q Consensus 431 ~~~~~~~~~~~~r~~~~~ 448 (457)
++++.++.+++||+||.+
T Consensus 402 ~iva~ii~~~L~R~rr~~ 419 (807)
T KOG1094|consen 402 LIVALIIALMLWRWRRLL 419 (807)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555666788855433
No 76
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=28.80 E-value=53 Score=25.79 Aligned_cols=19 Identities=26% Similarity=0.482 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhhhhccccc
Q 012748 434 LAICTLFLWRWIAKRKGNV 452 (457)
Q Consensus 434 ~~~~~~~~~r~~~~~~~~~ 452 (457)
+..+.+..||.+||+.|-+
T Consensus 22 ~~~~~wi~~Ra~~~~DKT~ 40 (72)
T PF13268_consen 22 LVSGIWILWRALRKKDKTA 40 (72)
T ss_pred HHHHHHHHHHHHHcCCCcH
Confidence 3335567888888877754
No 77
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=28.21 E-value=19 Score=35.56 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhcccc
Q 012748 431 MFALAICTLFLWRWIAKRKGN 451 (457)
Q Consensus 431 ~~~~~~~~~~~~r~~~~~~~~ 451 (457)
++++++..++++|+|||..++
T Consensus 237 LVLLaVGGLLfYr~rrRs~~e 257 (285)
T PF05337_consen 237 LVLLAVGGLLFYRRRRRSHRE 257 (285)
T ss_dssp ---------------------
T ss_pred hhhhhccceeeeccccccccc
Confidence 444555555666666555443
No 78
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]
Probab=27.55 E-value=1.7e+02 Score=33.12 Aligned_cols=23 Identities=17% Similarity=0.671 Sum_probs=15.2
Q ss_pred EEEhhhHHHHHHHHHHHHHHHhh
Q 012748 423 FVSPLIKGMFALAICTLFLWRWI 445 (457)
Q Consensus 423 i~~~v~~~~~~~~~~~~~~~r~~ 445 (457)
|++.++.+|++++++++++||..
T Consensus 716 i~lgvv~~ivligl~llliwkll 738 (783)
T KOG1226|consen 716 IVLGVVAGIVLIGLALLLIWKLL 738 (783)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444777788888899854
No 79
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=26.36 E-value=22 Score=37.84 Aligned_cols=13 Identities=15% Similarity=0.375 Sum_probs=8.1
Q ss_pred CCCcccC-Cccccc
Q 012748 314 TSGCIRR-SKLQCE 326 (457)
Q Consensus 314 ~~GC~~~-~~l~C~ 326 (457)
..+|.+. -+..|.
T Consensus 238 y~~C~~~~~~~~C~ 251 (439)
T PF02480_consen 238 YANCSPSGWPRRCP 251 (439)
T ss_dssp EEEEBTTC-TTTTE
T ss_pred hcCCCCCCCcCCCC
Confidence 4688876 355684
No 80
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=26.04 E-value=89 Score=30.89 Aligned_cols=35 Identities=23% Similarity=0.499 Sum_probs=27.1
Q ss_pred CCCCeEEEEecCCCCCCCCCcEEEEecCCcEEEEcC
Q 012748 67 PSEKAVIWVANRDNPLKDSSGIITISEDGNLVLVNG 102 (457)
Q Consensus 67 ~~~~tvVW~ANr~~Pv~~~~~~l~l~~dG~L~l~d~ 102 (457)
+.+++..|+--.+.++.+ ++.++||+.|.|++.|-
T Consensus 10 ~iDP~y~W~GP~g~~l~g-n~~~nIT~TG~L~~~~F 44 (271)
T PF07354_consen 10 LIDPTYLWTGPNGKPLSG-NSYVNITETGKLMFKNF 44 (271)
T ss_pred cCCCceEEECCCCcccCC-CCeEEEccCceEEeecc
Confidence 446677888888888886 46788888888888664
No 81
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=25.83 E-value=47 Score=24.27 Aligned_cols=20 Identities=15% Similarity=0.133 Sum_probs=10.6
Q ss_pred hhhHHHHHHHHHHHHHHHhh
Q 012748 426 PLIKGMFALAICTLFLWRWI 445 (457)
Q Consensus 426 ~v~~~~~~~~~~~~~~~r~~ 445 (457)
+++.+++++++++++.-|.|
T Consensus 20 i~A~vlfi~Gi~iils~kck 39 (50)
T PF02038_consen 20 IFAGVLFILGILIILSGKCK 39 (50)
T ss_dssp HHHHHHHHHHHHHHCTTHHH
T ss_pred HHHHHHHHHHHHHHHcCccc
Confidence 34444666666656544433
No 82
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=25.13 E-value=2.4e+02 Score=30.31 Aligned_cols=63 Identities=19% Similarity=0.289 Sum_probs=29.5
Q ss_pred CCeEEEEecCCCCCCCCCcEEEEecCCcE--------EEEcCCCeEEEeecCCCC--CCCceEEEEccCCCEEEEec
Q 012748 69 EKAVIWVANRDNPLKDSSGIITISEDGNL--------VLVNGQKEVLWSSNVSNL--VNNSTSAQLLDSGNLVLRDN 135 (457)
Q Consensus 69 ~~tvVW~ANr~~Pv~~~~~~l~l~~dG~L--------~l~d~~~~~vWst~~~~~--~~~~~~a~LldsGNlVl~d~ 135 (457)
...|+|.-..+..... .+.+..+|+| ...|-.|+++|.-...+. .... ....+++||+.++..
T Consensus 136 ~G~Vrw~~~~~~~~~~---~~~~l~nG~ll~~~~~~~~e~D~~G~v~~~~~l~~~~~~~HH-D~~~l~nGn~L~l~~ 208 (477)
T PF05935_consen 136 NGDVRWYLPLDSGSDN---SFKQLPNGNLLIGSGNRLYEIDLLGKVIWEYDLPGGYYDFHH-DIDELPNGNLLILAS 208 (477)
T ss_dssp TS-EEEEE-GGGT--S---SEEE-TTS-EEEEEBTEEEEE-TT--EEEEEE--TTEE-B-S--EEE-TTS-EEEEEE
T ss_pred CccEEEEEccCccccc---eeeEcCCCCEEEecCCceEEEcCCCCEEEeeecCCccccccc-ccEECCCCCEEEEEe
Confidence 4567887765543221 1444445544 455778999998665432 1134 678899999998754
No 83
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=24.60 E-value=2.3e+02 Score=22.65 Aligned_cols=16 Identities=13% Similarity=0.461 Sum_probs=9.3
Q ss_pred cEEEEcCCCeEEEeec
Q 012748 96 NLVLVNGQKEVLWSSN 111 (457)
Q Consensus 96 ~L~l~d~~~~~vWst~ 111 (457)
+++|+|.+|..||.-.
T Consensus 27 D~~v~d~~g~~vwrwS 42 (82)
T PF12690_consen 27 DFVVKDKEGKEVWRWS 42 (82)
T ss_dssp EEEEE-TT--EEEETT
T ss_pred EEEEECCCCCEEEEec
Confidence 5777788888887743
No 84
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=24.54 E-value=21 Score=32.26 Aligned_cols=15 Identities=13% Similarity=-0.376 Sum_probs=8.3
Q ss_pred eeE-EEEhhhHHHHHH
Q 012748 420 KDV-FVSPLIKGMFAL 434 (457)
Q Consensus 420 ~~~-i~~~v~~~~~~~ 434 (457)
-.. +++.+.++++++
T Consensus 52 IGvVVGVGg~ill~il 67 (154)
T PF04478_consen 52 IGVVVGVGGPILLGIL 67 (154)
T ss_pred EEEEecccHHHHHHHH
Confidence 356 667666554333
No 85
>PHA02887 EGF-like protein; Provisional
Probab=24.24 E-value=67 Score=27.78 Aligned_cols=58 Identities=14% Similarity=0.293 Sum_probs=34.3
Q ss_pred EEEecCCCEEEEEEecCCC--ceEEEeeecCCCCcc--ccccCCCcccCCC---CCCccccCCCCC
Q 012748 243 FALTAQGILEERIWIKWKD--NWEVGFLNLRTECDV--YGKCGAFGICNSQ---EKPICSCLEGFE 301 (457)
Q Consensus 243 ~~Ld~dG~l~~y~~~~~~~--~W~~~~~~p~d~C~~--~~~CG~~giC~~~---~~~~C~C~~GF~ 301 (457)
++-+..|++....+.+... .-...++.--++|.- -++|= +|.|.+- ..|.|.|++||.
T Consensus 53 i~rn~e~h~s~~~y~en~~~~~~~rk~~~hf~pC~~eyk~YCi-HG~C~yI~dL~epsCrC~~GYt 117 (126)
T PHA02887 53 IKRNFESHISKFNYKENANAQNFKRKNSMFFEKCKNDFNDFCI-NGECMNIIDLDEKFCICNKGYT 117 (126)
T ss_pred eecccccceeeeehhccccccchhhccccCccccChHhhCEee-CCEEEccccCCCceeECCCCcc
Confidence 4444555555555543321 112223333467854 57887 7999752 468999999995
No 86
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=24.17 E-value=31 Score=24.43 Aligned_cols=24 Identities=13% Similarity=-0.201 Sum_probs=9.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhhccc
Q 012748 427 LIKGMFALAICTLFLWRWIAKRKG 450 (457)
Q Consensus 427 v~~~~~~~~~~~~~~~r~~~~~~~ 450 (457)
.++.+++++.+++..++++|+..+
T Consensus 12 Yg~t~l~l~~li~~~~~~~r~~~~ 35 (45)
T TIGR03141 12 YGITALVLAGLILWSLLDRRRLLR 35 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334433333333344444444333
No 87
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=24.13 E-value=7.5e+02 Score=24.92 Aligned_cols=13 Identities=31% Similarity=0.598 Sum_probs=9.6
Q ss_pred EEEecCCCEEEEE
Q 012748 243 FALTAQGILEERI 255 (457)
Q Consensus 243 ~~Ld~dG~l~~y~ 255 (457)
+.|..+|.|-.|.
T Consensus 290 f~lG~~G~ll~~~ 302 (302)
T PF14870_consen 290 FVLGQDGVLLRYV 302 (302)
T ss_dssp EEE-STTEEEEE-
T ss_pred EEECCCcEEEEeC
Confidence 8899999987773
No 88
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=23.70 E-value=53 Score=26.35 Aligned_cols=11 Identities=9% Similarity=-0.121 Sum_probs=4.8
Q ss_pred hhhhccccccc
Q 012748 444 WIAKRKGNVLV 454 (457)
Q Consensus 444 ~~~~~~~~~~~ 454 (457)
+||++.++.+|
T Consensus 61 r~r~~~~~~kv 71 (79)
T PF07213_consen 61 RRRPTQEDDKV 71 (79)
T ss_pred ccCCcccCCEE
Confidence 33444444444
No 89
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=22.80 E-value=29 Score=23.47 Aligned_cols=14 Identities=29% Similarity=0.629 Sum_probs=9.8
Q ss_pred CCCccccCCCCCCC
Q 012748 290 EKPICSCLEGFEPK 303 (457)
Q Consensus 290 ~~~~C~C~~GF~p~ 303 (457)
....|+|++||...
T Consensus 17 g~~~C~C~~Gy~L~ 30 (36)
T PF14670_consen 17 GSYRCSCPPGYKLA 30 (36)
T ss_dssp TSEEEE-STTEEE-
T ss_pred CceEeECCCCCEEC
Confidence 35689999999864
No 90
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=22.57 E-value=52 Score=28.11 Aligned_cols=14 Identities=21% Similarity=-0.036 Sum_probs=5.9
Q ss_pred HHHHHHHHhhhhcc
Q 012748 436 ICTLFLWRWIAKRK 449 (457)
Q Consensus 436 ~~~~~~~r~~~~~~ 449 (457)
+..|++.|.++||.
T Consensus 16 i~yF~~iRPQkKr~ 29 (109)
T PRK05886 16 GFMYFASRRQRKAM 29 (109)
T ss_pred HHHHHHccHHHHHH
Confidence 33344444444433
No 91
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=22.33 E-value=3.7e+02 Score=29.28 Aligned_cols=76 Identities=14% Similarity=0.218 Sum_probs=44.1
Q ss_pred CCCeEEEEecCC-------CCCCCCCcEEEEe-cCCcEEEEcC-CCeEEEeecCCCCC-------------CCce----E
Q 012748 68 SEKAVIWVANRD-------NPLKDSSGIITIS-EDGNLVLVNG-QKEVLWSSNVSNLV-------------NNST----S 121 (457)
Q Consensus 68 ~~~tvVW~ANr~-------~Pv~~~~~~l~l~-~dG~L~l~d~-~~~~vWst~~~~~~-------------~~~~----~ 121 (457)
..-+++|...-. .|+.. .++|.+. .+|.|+=+|. +|+++|+....... +.+. +
T Consensus 45 ~~L~~~W~~~~g~~~g~~stPvv~-~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v 123 (527)
T TIGR03075 45 KKLQPAWTFSLGKLRGQESQPLVV-DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKV 123 (527)
T ss_pred ccceEEEEEECCCCCCcccCCEEE-CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEE
Confidence 344567765442 35543 3455554 5677776675 68999997642110 0000 1
Q ss_pred EEEccCCCEEEEeccCCeEEEee
Q 012748 122 AQLLDSGNLVLRDNINRAIVWES 144 (457)
Q Consensus 122 a~LldsGNlVl~d~~~~~~lWQS 144 (457)
..-.-+|.|+-.|..+++++|+-
T Consensus 124 ~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 124 FFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred EEEcCCCEEEEEECCCCCEEeec
Confidence 11124677887887689999984
No 92
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=21.28 E-value=37 Score=26.84 Aligned_cols=10 Identities=10% Similarity=0.185 Sum_probs=3.4
Q ss_pred HHHHHHHhhh
Q 012748 437 CTLFLWRWIA 446 (457)
Q Consensus 437 ~~~~~~r~~~ 446 (457)
++++++|+++
T Consensus 19 ~~~~~~rr~~ 28 (75)
T PF14575_consen 19 IVIVCFRRCK 28 (75)
T ss_dssp HHHCCCTT--
T ss_pred eEEEEEeeEc
Confidence 3344444443
No 93
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=21.14 E-value=5.5e+02 Score=26.03 Aligned_cols=75 Identities=23% Similarity=0.415 Sum_probs=45.9
Q ss_pred CCeEEEEecC-------CCCCCCCCcEEEEe-cCCcEEEEcC-CCeEEEeecCCC---CCCCce----EEEEc-cCCCEE
Q 012748 69 EKAVIWVANR-------DNPLKDSSGIITIS-EDGNLVLVNG-QKEVLWSSNVSN---LVNNST----SAQLL-DSGNLV 131 (457)
Q Consensus 69 ~~tvVW~ANr-------~~Pv~~~~~~l~l~-~dG~L~l~d~-~~~~vWst~~~~---~~~~~~----~a~Ll-dsGNlV 131 (457)
..+++|.-.- ..|+....+++-+. .+|.|.-+|. +|+.+|+.+... -....+ ..... ++|+++
T Consensus 87 ~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~ 166 (370)
T COG1520 87 TGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLY 166 (370)
T ss_pred CCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEE
Confidence 4456783322 23444334555555 4676777788 899999988765 111110 11222 679998
Q ss_pred EEeccCCeEEEe
Q 012748 132 LRDNINRAIVWE 143 (457)
Q Consensus 132 l~d~~~~~~lWQ 143 (457)
-.+.+++..+|+
T Consensus 167 al~~~tG~~~W~ 178 (370)
T COG1520 167 ALNADTGTLKWT 178 (370)
T ss_pred EEEccCCcEEEE
Confidence 888866888997
No 94
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=20.66 E-value=3.2e+02 Score=27.91 Aligned_cols=71 Identities=20% Similarity=0.316 Sum_probs=45.5
Q ss_pred EEEEecCCCCCCCCCcEEEEecCCcEEEEcC-CCe-EEEeecC----------CCCCCCceEEEEccCCCEEEEeccCCe
Q 012748 72 VIWVANRDNPLKDSSGIITISEDGNLVLVNG-QKE-VLWSSNV----------SNLVNNSTSAQLLDSGNLVLRDNINRA 139 (457)
Q Consensus 72 vVW~ANr~~Pv~~~~~~l~l~~dG~L~l~d~-~~~-~vWst~~----------~~~~~~~~~a~LldsGNlVl~d~~~~~ 139 (457)
..=.||.+.-+++.-..+.-.+.|+|+++.+ +|. -+|.--. .+.+... +|+...+|..+|....++.
T Consensus 250 cfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevc-Sa~Ftkn~kyiLsSG~DS~ 328 (430)
T KOG0640|consen 250 CFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVC-SAVFTKNGKYILSSGKDST 328 (430)
T ss_pred EeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceee-eEEEccCCeEEeecCCcce
Confidence 3456888877665444677888888888754 343 4676321 1122235 8899999999998653322
Q ss_pred -EEEe
Q 012748 140 -IVWE 143 (457)
Q Consensus 140 -~lWQ 143 (457)
-||+
T Consensus 329 vkLWE 333 (430)
T KOG0640|consen 329 VKLWE 333 (430)
T ss_pred eeeee
Confidence 3775
No 95
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=20.65 E-value=1.1e+02 Score=25.75 Aligned_cols=42 Identities=24% Similarity=0.602 Sum_probs=22.2
Q ss_pred CCCccccccCCCcccCCCCCCccc-cCCCCCCCChhhhcCCCCCCCcccCC
Q 012748 272 TECDVYGKCGAFGICNSQEKPICS-CLEGFEPKNAEEWNRGNWTSGCIRRS 321 (457)
Q Consensus 272 d~C~~~~~CG~~giC~~~~~~~C~-C~~GF~p~~~~~w~~~~~~~GC~~~~ 321 (457)
|.|+ +||+-|+=.....-.|. |-.-|....- +...+||.|-.
T Consensus 36 daCe---iC~~~GY~q~g~~lvC~~C~~~~~~~~i-----g~~~GGCNP~P 78 (102)
T PF10080_consen 36 DACE---ICGPKGYYQEGDQLVCKNCGVRFNLPTI-----GGKSGGCNPIP 78 (102)
T ss_pred Eecc---ccCCCceEEECCEEEEecCCCEEehhhc-----ccccCCCCccC
Confidence 5676 47777754333334454 5444433222 22478998743
No 96
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=20.02 E-value=99 Score=20.54 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=14.7
Q ss_pred ccCCCEEEEeccCCeEEEe
Q 012748 125 LDSGNLVLRDNINRAIVWE 143 (457)
Q Consensus 125 ldsGNlVl~d~~~~~~lWQ 143 (457)
..+|.|+-.|..+++.+|+
T Consensus 7 ~~~g~l~AlD~~TG~~~W~ 25 (38)
T PF01011_consen 7 TPDGYLYALDAKTGKVLWK 25 (38)
T ss_dssp TTTSEEEEEETTTTSEEEE
T ss_pred CCCCEEEEEECCCCCEEEe
Confidence 5678888888767888885
Done!