Query 012749
Match_columns 457
No_of_seqs 492 out of 2941
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 05:54:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012749.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012749hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01802 AN1_N ubiquitin-like d 99.8 9.8E-21 2.1E-25 152.1 11.7 97 360-456 7-103 (103)
2 KOG0003 Ubiquitin/60s ribosoma 99.8 9E-22 1.9E-26 150.6 1.0 76 1-76 1-76 (128)
3 cd01802 AN1_N ubiquitin-like d 99.8 3.5E-20 7.5E-25 148.9 9.7 99 54-152 5-103 (103)
4 cd01793 Fubi Fubi ubiquitin-li 99.8 1.3E-19 2.7E-24 137.8 8.8 74 381-456 1-74 (74)
5 PTZ00044 ubiquitin; Provisiona 99.8 9.2E-19 2E-23 134.1 9.0 76 381-456 1-76 (76)
6 KOG0004 Ubiquitin/40S ribosoma 99.8 1.4E-19 3E-24 150.0 4.3 76 1-76 1-76 (156)
7 cd01810 ISG15_repeat2 ISG15 ub 99.8 1.4E-18 3E-23 132.1 8.6 74 383-456 1-74 (74)
8 cd01807 GDX_N ubiquitin-like d 99.8 1.3E-18 2.8E-23 132.2 7.4 73 1-73 1-73 (74)
9 cd01793 Fubi Fubi ubiquitin-li 99.8 1.6E-18 3.6E-23 131.6 7.7 74 1-76 1-74 (74)
10 cd01807 GDX_N ubiquitin-like d 99.7 5.4E-18 1.2E-22 128.8 8.6 73 381-453 1-73 (74)
11 cd01803 Ubiquitin Ubiquitin. U 99.7 6.1E-18 1.3E-22 129.6 8.9 76 381-456 1-76 (76)
12 PTZ00044 ubiquitin; Provisiona 99.7 6.1E-18 1.3E-22 129.5 8.0 75 1-75 1-75 (76)
13 cd01797 NIRF_N amino-terminal 99.7 5.7E-18 1.2E-22 129.3 7.4 74 1-74 1-76 (78)
14 cd01806 Nedd8 Nebb8-like ubiq 99.7 1.3E-17 2.8E-22 127.8 9.4 76 381-456 1-76 (76)
15 cd01804 midnolin_N Ubiquitin-l 99.7 3.3E-17 7.1E-22 125.5 9.1 77 380-457 1-77 (78)
16 cd01810 ISG15_repeat2 ISG15 ub 99.7 2.5E-17 5.5E-22 125.1 7.2 73 3-75 1-73 (74)
17 cd01797 NIRF_N amino-terminal 99.7 4.1E-17 8.9E-22 124.6 8.2 74 381-454 1-76 (78)
18 KOG0003 Ubiquitin/60s ribosoma 99.7 3.2E-18 6.8E-23 131.2 0.2 76 381-456 1-76 (128)
19 cd01798 parkin_N amino-termina 99.7 1.2E-16 2.6E-21 120.1 7.7 70 383-452 1-70 (70)
20 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 1.9E-16 4.2E-21 119.0 8.4 72 380-451 1-72 (73)
21 KOG0004 Ubiquitin/40S ribosoma 99.7 4.1E-17 8.9E-22 135.4 4.5 77 381-457 1-77 (156)
22 cd01806 Nedd8 Nebb8-like ubiq 99.7 2.3E-16 4.9E-21 120.8 8.2 75 1-75 1-75 (76)
23 cd01803 Ubiquitin Ubiquitin. U 99.7 2.2E-16 4.7E-21 120.9 8.0 76 1-76 1-76 (76)
24 KOG0005 Ubiquitin-like protein 99.7 7.4E-17 1.6E-21 109.9 4.0 70 1-70 1-70 (70)
25 cd01798 parkin_N amino-termina 99.7 1.8E-16 4E-21 119.1 6.4 70 3-72 1-70 (70)
26 cd01791 Ubl5 UBL5 ubiquitin-li 99.6 2.5E-16 5.4E-21 118.3 6.6 70 1-70 2-71 (73)
27 cd01763 Sumo Small ubiquitin-r 99.6 9.2E-16 2E-20 120.1 10.0 79 378-456 9-87 (87)
28 cd01794 DC_UbP_C dendritic cel 99.6 5.6E-16 1.2E-20 115.7 7.6 68 384-451 2-69 (70)
29 cd01805 RAD23_N Ubiquitin-like 99.6 9.6E-16 2.1E-20 117.6 9.0 73 381-453 1-75 (77)
30 cd01800 SF3a120_C Ubiquitin-li 99.6 6.6E-16 1.4E-20 117.8 7.5 70 388-457 5-74 (76)
31 cd01794 DC_UbP_C dendritic cel 99.6 5.1E-16 1.1E-20 115.9 6.5 67 5-71 3-69 (70)
32 KOG0005 Ubiquitin-like protein 99.6 2.1E-16 4.6E-21 107.7 3.7 70 77-146 1-70 (70)
33 cd01804 midnolin_N Ubiquitin-l 99.6 9.8E-16 2.1E-20 117.3 7.7 77 76-153 1-77 (78)
34 cd01809 Scythe_N Ubiquitin-lik 99.6 1.6E-15 3.5E-20 114.8 8.4 72 381-452 1-72 (72)
35 cd01805 RAD23_N Ubiquitin-like 99.6 1.6E-15 3.4E-20 116.4 7.9 72 1-72 1-74 (77)
36 cd01809 Scythe_N Ubiquitin-lik 99.6 1.5E-15 3.3E-20 114.9 7.4 72 1-72 1-72 (72)
37 PF00240 ubiquitin: Ubiquitin 99.6 1.9E-15 4.1E-20 113.4 7.8 69 386-454 1-69 (69)
38 cd01792 ISG15_repeat1 ISG15 ub 99.6 1.9E-15 4.2E-20 116.5 7.8 73 380-452 2-76 (80)
39 cd01808 hPLIC_N Ubiquitin-like 99.6 2.5E-15 5.4E-20 113.2 8.0 71 381-452 1-71 (71)
40 cd01808 hPLIC_N Ubiquitin-like 99.6 4E-15 8.7E-20 112.1 7.1 71 1-72 1-71 (71)
41 cd01792 ISG15_repeat1 ISG15 ub 99.6 2.7E-15 5.8E-20 115.7 6.2 72 1-72 3-76 (80)
42 cd01796 DDI1_N DNA damage indu 99.6 5.6E-15 1.2E-19 111.0 7.5 68 383-450 1-70 (71)
43 cd01796 DDI1_N DNA damage indu 99.5 1.4E-14 3E-19 108.8 6.1 68 3-70 1-70 (71)
44 PF00240 ubiquitin: Ubiquitin 99.5 3.3E-14 7.1E-19 106.6 7.1 68 6-73 1-68 (69)
45 cd01790 Herp_N Homocysteine-re 99.5 4.1E-14 8.9E-19 106.7 7.5 72 380-451 1-78 (79)
46 cd01800 SF3a120_C Ubiquitin-li 99.5 3E-14 6.4E-19 108.7 6.5 68 8-75 5-72 (76)
47 cd01812 BAG1_N Ubiquitin-like 99.5 5.4E-14 1.2E-18 106.0 7.4 70 381-451 1-70 (71)
48 cd01790 Herp_N Homocysteine-re 99.5 4.3E-14 9.3E-19 106.6 6.2 71 1-71 2-78 (79)
49 cd01763 Sumo Small ubiquitin-r 99.5 8.7E-14 1.9E-18 108.9 8.2 76 1-76 12-87 (87)
50 cd01812 BAG1_N Ubiquitin-like 99.4 3.8E-13 8.3E-18 101.4 6.6 70 77-147 1-70 (71)
51 cd01813 UBP_N UBP ubiquitin pr 99.4 5.6E-13 1.2E-17 100.7 7.2 69 381-450 1-72 (74)
52 smart00213 UBQ Ubiquitin homol 99.4 7.1E-13 1.5E-17 97.6 6.9 64 381-445 1-64 (64)
53 cd01813 UBP_N UBP ubiquitin pr 99.4 7.4E-13 1.6E-17 100.0 6.7 69 77-146 1-72 (74)
54 cd01799 Hoil1_N Ubiquitin-like 99.4 1.2E-12 2.7E-17 98.9 7.4 65 386-451 8-74 (75)
55 cd01799 Hoil1_N Ubiquitin-like 99.4 1.1E-12 2.4E-17 99.1 6.7 69 2-71 2-74 (75)
56 cd01815 BMSC_UbP_N Ubiquitin-l 99.3 1.7E-12 3.7E-17 96.4 5.1 55 397-451 16-74 (75)
57 smart00213 UBQ Ubiquitin homol 99.3 4E-12 8.6E-17 93.6 6.5 64 1-65 1-64 (64)
58 cd01815 BMSC_UbP_N Ubiquitin-l 99.3 2.7E-12 5.8E-17 95.3 4.7 53 171-223 19-74 (75)
59 cd01814 NTGP5 Ubiquitin-like N 99.3 2.6E-12 5.7E-17 101.8 4.2 76 75-150 3-92 (113)
60 cd01814 NTGP5 Ubiquitin-like N 99.3 3.8E-12 8.3E-17 100.9 4.3 73 2-74 6-92 (113)
61 TIGR00601 rad23 UV excision re 99.3 1.1E-11 2.4E-16 122.0 8.6 72 381-452 1-75 (378)
62 TIGR00601 rad23 UV excision re 99.3 8.1E-12 1.8E-16 123.0 7.5 72 1-72 1-75 (378)
63 cd01769 UBL Ubiquitin-like dom 99.2 1E-10 2.2E-15 87.4 7.8 67 385-451 2-68 (69)
64 PF11976 Rad60-SLD: Ubiquitin- 99.2 1E-10 2.2E-15 88.3 7.6 71 381-451 1-72 (72)
65 cd01795 USP48_C USP ubiquitin- 99.2 5.3E-11 1.1E-15 91.3 5.4 62 316-377 16-78 (107)
66 cd01795 USP48_C USP ubiquitin- 99.1 8.8E-11 1.9E-15 90.1 6.5 62 392-453 16-78 (107)
67 KOG0010 Ubiquitin-like protein 99.1 1.2E-10 2.5E-15 114.7 6.8 73 380-453 15-87 (493)
68 KOG0010 Ubiquitin-like protein 99.1 2E-10 4.4E-15 113.0 6.7 74 152-226 15-88 (493)
69 cd01769 UBL Ubiquitin-like dom 99.0 4.9E-10 1.1E-14 83.7 6.6 67 81-147 2-68 (69)
70 KOG0001 Ubiquitin and ubiquiti 99.0 1.2E-09 2.5E-14 82.4 7.8 73 2-74 1-73 (75)
71 PF11976 Rad60-SLD: Ubiquitin- 99.0 6.6E-10 1.4E-14 83.8 6.3 71 1-71 1-72 (72)
72 KOG0011 Nucleotide excision re 99.0 6E-10 1.3E-14 104.2 6.5 73 1-73 1-75 (340)
73 KOG0011 Nucleotide excision re 99.0 7.8E-10 1.7E-14 103.5 6.2 74 77-150 1-76 (340)
74 KOG0001 Ubiquitin and ubiquiti 98.9 6.8E-09 1.5E-13 78.2 9.5 74 383-456 2-75 (75)
75 cd01789 Alp11_N Ubiquitin-like 98.9 7.2E-09 1.6E-13 80.3 8.8 69 382-450 3-79 (84)
76 cd01788 ElonginB Ubiquitin-lik 98.8 1.1E-08 2.4E-13 80.8 7.2 72 382-453 2-81 (119)
77 PF14560 Ubiquitin_2: Ubiquiti 98.8 2.8E-08 6.1E-13 77.8 8.2 70 381-450 2-81 (87)
78 cd01789 Alp11_N Ubiquitin-like 98.7 7.4E-08 1.6E-12 74.7 7.7 70 78-147 3-80 (84)
79 PLN02560 enoyl-CoA reductase 98.6 1E-07 2.2E-12 91.9 7.8 69 381-449 1-80 (308)
80 cd01811 OASL_repeat1 2'-5' oli 98.6 2.1E-07 4.6E-12 67.4 7.3 73 153-226 1-78 (80)
81 cd01788 ElonginB Ubiquitin-lik 98.6 1.1E-07 2.4E-12 75.2 6.4 73 1-73 1-81 (119)
82 PF13881 Rad60-SLD_2: Ubiquiti 98.5 3.4E-07 7.5E-12 74.4 7.7 75 76-150 2-90 (111)
83 KOG1769 Ubiquitin-like protein 98.5 9E-07 1.9E-11 68.5 9.4 79 379-457 19-97 (99)
84 PLN02560 enoyl-CoA reductase 98.5 2E-07 4.4E-12 89.9 6.8 69 1-69 1-80 (308)
85 PF13881 Rad60-SLD_2: Ubiquiti 98.5 7.2E-07 1.6E-11 72.5 8.9 74 153-226 3-90 (111)
86 PF11543 UN_NPL4: Nuclear pore 98.5 2.2E-07 4.9E-12 70.9 5.6 71 379-450 3-78 (80)
87 KOG4248 Ubiquitin-like protein 98.5 2.3E-07 4.9E-12 98.6 6.3 73 154-227 4-76 (1143)
88 PF14560 Ubiquitin_2: Ubiquiti 98.4 8.7E-07 1.9E-11 69.3 8.0 71 154-224 3-83 (87)
89 KOG4248 Ubiquitin-like protein 98.4 3.5E-07 7.6E-12 97.2 6.8 72 382-454 4-75 (1143)
90 cd01801 Tsc13_N Ubiquitin-like 98.4 1E-06 2.2E-11 67.2 6.4 52 398-449 20-74 (77)
91 cd01811 OASL_repeat1 2'-5' oli 98.3 1.8E-06 3.9E-11 62.6 6.3 70 77-147 1-75 (80)
92 cd00196 UBQ Ubiquitin-like pro 98.2 7.6E-06 1.6E-10 58.9 7.4 63 389-451 6-68 (69)
93 cd01801 Tsc13_N Ubiquitin-like 98.1 5.4E-06 1.2E-10 63.2 5.6 52 94-145 20-74 (77)
94 PF11543 UN_NPL4: Nuclear pore 98.1 6.8E-06 1.5E-10 62.8 5.2 71 75-146 3-78 (80)
95 KOG1872 Ubiquitin-specific pro 98.0 6.6E-06 1.4E-10 81.1 6.0 70 305-375 4-74 (473)
96 KOG3493 Ubiquitin-like protein 98.0 2.1E-06 4.5E-11 60.2 1.4 69 382-450 3-71 (73)
97 cd00196 UBQ Ubiquitin-like pro 97.9 4.3E-05 9.4E-10 54.8 6.3 65 7-71 4-68 (69)
98 KOG0006 E3 ubiquitin-protein l 97.9 2.4E-05 5.2E-10 72.8 5.6 72 381-452 1-76 (446)
99 KOG0006 E3 ubiquitin-protein l 97.8 2.7E-05 5.9E-10 72.4 5.8 63 87-149 14-77 (446)
100 COG5227 SMT3 Ubiquitin-like pr 97.8 3.2E-05 6.9E-10 58.3 4.0 78 380-457 24-101 (103)
101 KOG4495 RNA polymerase II tran 97.7 3.3E-05 7.1E-10 58.9 3.8 52 391-442 12-65 (110)
102 PF13019 Telomere_Sde2: Telome 97.7 0.00018 3.9E-09 61.7 8.5 76 381-456 1-88 (162)
103 PF11470 TUG-UBL1: GLUT4 regul 97.6 0.00021 4.6E-09 51.9 5.8 63 235-297 3-65 (65)
104 KOG1769 Ubiquitin-like protein 97.5 0.00073 1.6E-08 52.6 8.8 76 229-304 21-96 (99)
105 KOG4495 RNA polymerase II tran 97.4 0.00029 6.4E-09 53.8 4.4 61 1-61 1-64 (110)
106 KOG3493 Ubiquitin-like protein 97.2 0.00014 3.1E-09 51.1 1.6 67 231-297 4-70 (73)
107 PF11470 TUG-UBL1: GLUT4 regul 97.2 0.0012 2.5E-08 48.1 6.1 63 387-449 3-65 (65)
108 PF08817 YukD: WXG100 protein 97.2 0.0011 2.3E-08 50.8 5.8 69 381-449 3-78 (79)
109 KOG1872 Ubiquitin-specific pro 97.1 0.0013 2.9E-08 65.2 6.8 70 381-451 4-74 (473)
110 PF00789 UBX: UBX domain; Int 96.7 0.013 2.9E-07 45.0 8.6 72 379-450 5-81 (82)
111 PF13019 Telomere_Sde2: Telome 96.7 0.0073 1.6E-07 52.0 7.5 74 1-74 1-86 (162)
112 PF08817 YukD: WXG100 protein 96.5 0.0071 1.5E-07 46.2 6.0 68 230-297 4-78 (79)
113 PF00789 UBX: UBX domain; Int 96.5 0.02 4.3E-07 43.9 8.4 72 151-222 5-81 (82)
114 PF10302 DUF2407: DUF2407 ubiq 96.3 0.0092 2E-07 47.3 5.3 57 79-135 3-64 (97)
115 KOG0013 Uncharacterized conser 96.3 0.0059 1.3E-07 54.1 4.6 62 84-145 154-215 (231)
116 smart00166 UBX Domain present 96.1 0.029 6.3E-07 42.9 7.4 70 152-221 4-78 (80)
117 smart00166 UBX Domain present 96.1 0.044 9.5E-07 41.9 8.1 72 379-450 3-79 (80)
118 PF10302 DUF2407: DUF2407 ubiq 96.0 0.014 3.1E-07 46.2 5.3 49 163-211 12-64 (97)
119 cd01767 UBX UBX (ubiquitin reg 95.7 0.087 1.9E-06 39.9 8.4 69 380-450 2-75 (77)
120 cd01770 p47_UBX p47-like ubiqu 95.7 0.075 1.6E-06 40.5 7.8 68 379-446 3-74 (79)
121 KOG1639 Steroid reductase requ 95.7 0.019 4.1E-07 52.3 5.2 69 381-449 1-76 (297)
122 cd01772 SAKS1_UBX SAKS1-like U 95.5 0.099 2.2E-06 39.8 7.9 68 153-221 5-77 (79)
123 COG5417 Uncharacterized small 95.3 0.13 2.9E-06 37.7 7.5 65 385-449 11-80 (81)
124 cd01772 SAKS1_UBX SAKS1-like U 95.3 0.087 1.9E-06 40.1 7.1 68 306-374 6-78 (79)
125 cd01774 Faf1_like2_UBX Faf1 ik 95.2 0.18 4E-06 38.9 8.5 71 379-450 3-83 (85)
126 KOG0013 Uncharacterized conser 95.1 0.035 7.6E-07 49.3 4.9 63 390-452 156-218 (231)
127 cd01767 UBX UBX (ubiquitin reg 95.0 0.14 3E-06 38.7 7.3 67 305-373 3-74 (77)
128 cd01773 Faf1_like1_UBX Faf1 ik 94.9 0.29 6.2E-06 37.4 8.6 74 378-452 3-81 (82)
129 cd01770 p47_UBX p47-like ubiqu 94.8 0.12 2.6E-06 39.3 6.6 65 304-368 4-72 (79)
130 PF14533 USP7_C2: Ubiquitin-sp 94.6 0.39 8.5E-06 44.1 10.6 123 315-439 34-193 (213)
131 COG5417 Uncharacterized small 94.5 0.2 4.4E-06 36.8 6.5 67 231-297 9-80 (81)
132 cd01771 Faf1_UBX Faf1 UBX doma 94.4 0.37 8E-06 36.7 8.4 73 379-452 3-80 (80)
133 cd01774 Faf1_like2_UBX Faf1 ik 94.4 0.28 6.1E-06 37.9 7.8 70 151-221 3-82 (85)
134 PF11620 GABP-alpha: GA-bindin 94.3 0.29 6.3E-06 37.1 7.3 57 241-297 5-61 (88)
135 PRK06437 hypothetical protein; 94.3 0.38 8.3E-06 35.3 8.0 59 389-456 9-67 (67)
136 cd01773 Faf1_like1_UBX Faf1 ik 94.1 0.34 7.5E-06 37.0 7.5 70 305-375 6-80 (82)
137 PF14533 USP7_C2: Ubiquitin-sp 94.1 0.4 8.7E-06 44.1 9.5 103 163-267 34-161 (213)
138 cd01771 Faf1_UBX Faf1 UBX doma 93.9 0.35 7.5E-06 36.9 7.3 70 304-374 4-78 (80)
139 COG5227 SMT3 Ubiquitin-like pr 93.8 0.25 5.5E-06 37.7 6.1 69 229-297 25-93 (103)
140 KOG3206 Alpha-tubulin folding 93.4 0.24 5.1E-06 44.1 6.3 58 393-450 15-79 (234)
141 PF12436 USP7_ICP0_bdg: ICP0-b 92.5 0.66 1.4E-05 43.8 8.5 106 243-348 89-223 (249)
142 PRK08364 sulfur carrier protei 92.5 1.3 2.7E-05 32.8 8.3 66 381-456 5-70 (70)
143 PF09379 FERM_N: FERM N-termin 92.4 0.79 1.7E-05 34.6 7.5 68 385-452 1-75 (80)
144 PF12436 USP7_ICP0_bdg: ICP0-b 92.4 1.1 2.4E-05 42.3 9.9 107 319-425 89-224 (249)
145 cd00754 MoaD Ubiquitin domain 92.4 0.57 1.2E-05 35.4 6.6 60 392-456 17-80 (80)
146 PF15044 CLU_N: Mitochondrial 92.0 0.3 6.6E-06 36.8 4.5 56 397-452 1-58 (76)
147 PRK06488 sulfur carrier protei 91.5 1.1 2.4E-05 32.5 7.0 65 381-456 1-65 (65)
148 PF15044 CLU_N: Mitochondrial 91.3 0.38 8.2E-06 36.3 4.4 57 169-225 1-59 (76)
149 PF11620 GABP-alpha: GA-bindin 91.2 0.73 1.6E-05 35.0 5.7 61 392-452 4-64 (88)
150 cd06406 PB1_P67 A PB1 domain i 90.8 1.1 2.3E-05 34.0 6.3 37 392-428 12-48 (80)
151 PF09379 FERM_N: FERM N-termin 90.6 1.4 3E-05 33.3 7.1 58 233-290 1-65 (80)
152 PLN02799 Molybdopterin synthas 90.3 1.2 2.5E-05 34.1 6.5 71 381-456 2-82 (82)
153 KOG1639 Steroid reductase requ 90.3 0.39 8.6E-06 44.0 4.3 70 77-146 1-77 (297)
154 PF14453 ThiS-like: ThiS-like 90.0 1.1 2.5E-05 31.5 5.5 55 381-451 1-55 (57)
155 cd06409 PB1_MUG70 The MUG70 pr 89.5 1.1 2.3E-05 34.6 5.5 43 383-425 3-48 (86)
156 cd06409 PB1_MUG70 The MUG70 pr 88.7 1.2 2.6E-05 34.3 5.3 44 231-274 3-49 (86)
157 PF12754 Blt1: Cell-cycle cont 88.2 0.14 3.1E-06 48.7 0.0 58 400-457 103-182 (309)
158 PRK06944 sulfur carrier protei 87.9 3 6.6E-05 30.1 7.0 57 394-456 9-65 (65)
159 cd01760 RBD Ubiquitin-like dom 87.6 1.5 3.2E-05 32.7 5.0 45 3-47 2-46 (72)
160 smart00455 RBD Raf-like Ras-bi 87.0 1.8 3.8E-05 32.1 5.2 44 232-275 3-46 (70)
161 smart00455 RBD Raf-like Ras-bi 87.0 1.7 3.7E-05 32.2 5.1 45 3-47 2-46 (70)
162 PRK05659 sulfur carrier protei 86.9 3 6.4E-05 30.2 6.4 58 394-456 9-66 (66)
163 cd01760 RBD Ubiquitin-like dom 86.9 1.7 3.6E-05 32.4 5.0 45 232-276 3-47 (72)
164 PRK05863 sulfur carrier protei 86.7 2.7 5.9E-05 30.5 6.0 57 394-456 9-65 (65)
165 TIGR01682 moaD molybdopterin c 86.6 4.1 8.9E-05 30.8 7.3 59 393-456 18-80 (80)
166 PRK08053 sulfur carrier protei 86.3 4.4 9.6E-05 29.4 7.0 66 381-456 1-66 (66)
167 cd00565 ThiS ThiaminS ubiquiti 86.0 3.4 7.3E-05 29.9 6.3 59 393-456 7-65 (65)
168 TIGR01687 moaD_arch MoaD famil 85.6 5.1 0.00011 30.9 7.5 61 392-456 17-88 (88)
169 TIGR01683 thiS thiamine biosyn 85.6 4.1 8.9E-05 29.4 6.5 58 394-456 7-64 (64)
170 KOG4583 Membrane-associated ER 85.1 0.46 1E-05 45.4 1.5 72 76-147 9-86 (391)
171 PF02597 ThiS: ThiS family; I 85.0 3.5 7.5E-05 30.7 6.2 63 392-456 13-77 (77)
172 smart00666 PB1 PB1 domain. Pho 85.0 3.6 7.7E-05 31.1 6.2 45 382-427 3-47 (81)
173 cd06406 PB1_P67 A PB1 domain i 84.8 5.4 0.00012 30.3 6.8 37 88-124 12-48 (80)
174 PRK06083 sulfur carrier protei 84.6 4.3 9.4E-05 31.2 6.5 67 380-456 18-84 (84)
175 KOG3206 Alpha-tubulin folding 84.5 2.1 4.6E-05 38.2 5.2 92 89-183 15-120 (234)
176 PRK07440 hypothetical protein; 84.2 5.5 0.00012 29.4 6.7 67 380-456 4-70 (70)
177 cd01818 TIAM1_RBD Ubiquitin do 83.6 2.9 6.3E-05 31.1 4.8 50 232-281 3-52 (77)
178 TIGR03028 EpsE polysaccharide 83.6 38 0.00083 31.6 14.8 139 286-449 1-159 (239)
179 smart00295 B41 Band 4.1 homolo 83.1 9.7 0.00021 34.2 9.5 74 379-452 2-83 (207)
180 PF14836 Ubiquitin_3: Ubiquiti 83.0 10 0.00022 29.4 7.8 65 391-456 14-84 (88)
181 cd06407 PB1_NLP A PB1 domain i 82.5 3.3 7.3E-05 31.7 5.1 42 236-277 7-49 (82)
182 KOG4583 Membrane-associated ER 82.5 0.59 1.3E-05 44.8 1.1 74 152-225 9-88 (391)
183 KOG0012 DNA damage inducible p 82.3 1.6 3.4E-05 42.4 3.9 63 389-451 11-75 (380)
184 PF10790 DUF2604: Protein of U 82.0 6.4 0.00014 28.1 5.8 65 389-453 4-72 (76)
185 PF02196 RBD: Raf-like Ras-bin 81.9 5.4 0.00012 29.6 5.9 45 3-47 3-47 (71)
186 KOG4598 Putative ubiquitin-spe 81.7 1.8 3.9E-05 45.6 4.3 182 164-348 878-1105(1203)
187 PRK06437 hypothetical protein; 79.6 13 0.00028 27.1 7.2 54 237-299 9-62 (67)
188 KOG2982 Uncharacterized conser 79.0 2.9 6.3E-05 40.1 4.3 58 393-450 350-415 (418)
189 PF14836 Ubiquitin_3: Ubiquiti 78.9 8.6 0.00019 29.8 6.2 64 87-151 14-83 (88)
190 PF00564 PB1: PB1 domain; Int 78.9 8.6 0.00019 29.1 6.4 46 381-426 2-47 (84)
191 PF02196 RBD: Raf-like Ras-bin 78.4 8.3 0.00018 28.6 5.9 53 383-435 3-57 (71)
192 KOG4261 Talin [Cytoskeleton] 77.5 3.6 7.7E-05 44.0 4.9 100 241-343 15-123 (1003)
193 PRK07696 sulfur carrier protei 77.1 13 0.00028 27.2 6.5 61 389-456 6-67 (67)
194 smart00295 B41 Band 4.1 homolo 75.5 17 0.00038 32.5 8.6 63 228-290 3-72 (207)
195 PF14453 ThiS-like: ThiS-like 75.4 6.4 0.00014 27.8 4.2 46 1-57 1-46 (57)
196 PF10790 DUF2604: Protein of U 75.4 11 0.00024 27.0 5.3 65 312-376 3-71 (76)
197 cd06407 PB1_NLP A PB1 domain i 75.1 11 0.00023 28.9 5.8 70 382-452 2-81 (82)
198 cd00754 MoaD Ubiquitin domain 75.0 12 0.00025 28.1 6.1 59 164-227 17-79 (80)
199 KOG2086 Protein tyrosine phosp 74.9 6.9 0.00015 38.6 5.9 68 378-445 303-374 (380)
200 cd01777 SNX27_RA Ubiquitin dom 73.9 7.8 0.00017 29.8 4.7 39 230-268 3-41 (87)
201 COG2104 ThiS Sulfur transfer p 73.4 29 0.00063 25.5 7.5 59 393-456 10-68 (68)
202 cd06408 PB1_NoxR The PB1 domai 72.2 14 0.0003 28.5 5.8 40 312-352 9-48 (86)
203 TIGR03028 EpsE polysaccharide 72.1 85 0.0018 29.2 21.3 213 210-452 1-237 (239)
204 smart00666 PB1 PB1 domain. Pho 70.9 22 0.00047 26.7 6.8 45 78-123 3-47 (81)
205 TIGR02958 sec_mycoba_snm4 secr 70.9 18 0.00038 37.4 8.1 71 382-453 4-81 (452)
206 cd01817 RGS12_RBD Ubiquitin do 70.2 12 0.00027 27.7 4.9 44 5-48 4-47 (73)
207 cd06411 PB1_p51 The PB1 domain 70.0 8.5 0.00018 29.0 4.1 35 392-426 8-42 (78)
208 PF14732 UAE_UbL: Ubiquitin/SU 68.9 16 0.00034 28.3 5.6 56 395-450 2-67 (87)
209 KOG0012 DNA damage inducible p 68.1 6.4 0.00014 38.4 3.9 67 161-227 11-79 (380)
210 cd01777 SNX27_RA Ubiquitin dom 67.2 13 0.00027 28.7 4.5 39 2-40 3-41 (87)
211 cd06408 PB1_NoxR The PB1 domai 66.6 33 0.00071 26.5 6.7 46 381-428 3-48 (86)
212 PTZ00380 microtubule-associate 65.4 7 0.00015 32.2 3.1 48 391-438 41-88 (121)
213 KOG4250 TANK binding protein k 65.2 12 0.00026 40.0 5.5 44 7-50 321-364 (732)
214 PRK11130 moaD molybdopterin sy 64.8 38 0.00083 25.6 7.0 58 394-456 18-81 (81)
215 cd01817 RGS12_RBD Ubiquitin do 64.0 22 0.00047 26.5 5.1 45 387-431 6-52 (73)
216 cd01818 TIAM1_RBD Ubiquitin do 63.7 26 0.00056 26.2 5.4 42 384-425 3-44 (77)
217 KOG2086 Protein tyrosine phosp 63.6 14 0.00031 36.5 5.4 66 229-294 306-375 (380)
218 cd05992 PB1 The PB1 domain is 63.4 25 0.00054 26.3 5.8 43 383-426 3-46 (81)
219 PF12754 Blt1: Cell-cycle cont 62.8 2.4 5.3E-05 40.5 0.0 61 76-136 78-158 (309)
220 cd06410 PB1_UP2 Uncharacterize 62.8 25 0.00054 27.8 5.7 40 385-425 17-56 (97)
221 KOG4261 Talin [Cytoskeleton] 62.7 20 0.00043 38.7 6.5 102 314-418 12-122 (1003)
222 PF08337 Plexin_cytopl: Plexin 62.7 12 0.00026 39.1 4.9 63 391-453 202-290 (539)
223 PF14847 Ras_bdg_2: Ras-bindin 62.3 22 0.00048 28.6 5.4 36 3-38 3-38 (105)
224 PRK11840 bifunctional sulfur c 61.5 26 0.00056 34.2 6.6 59 394-457 9-67 (326)
225 PRK06488 sulfur carrier protei 61.3 57 0.0012 23.4 7.1 58 161-226 6-63 (65)
226 PF08337 Plexin_cytopl: Plexin 61.1 18 0.00039 37.9 5.9 65 162-226 201-291 (539)
227 COG5100 NPL4 Nuclear pore prot 57.4 38 0.00083 33.6 7.0 70 381-451 1-78 (571)
228 cd06411 PB1_p51 The PB1 domain 57.3 16 0.00035 27.5 3.5 35 316-350 8-42 (78)
229 PRK08364 sulfur carrier protei 56.4 54 0.0012 24.0 6.3 51 240-299 15-65 (70)
230 KOG2689 Predicted ubiquitin re 55.7 26 0.00055 33.0 5.3 70 305-374 211-285 (290)
231 cd01768 RA RA (Ras-associating 55.5 89 0.0019 23.7 8.3 35 390-424 12-48 (87)
232 PF14451 Ub-Mut7C: Mut7-C ubiq 55.4 54 0.0012 25.0 6.2 53 390-451 22-75 (81)
233 PF10209 DUF2340: Uncharacteri 55.1 23 0.0005 29.1 4.4 54 396-449 21-105 (122)
234 PF02597 ThiS: ThiS family; I 54.9 48 0.0011 24.3 6.0 62 164-227 13-76 (77)
235 PF11069 DUF2870: Protein of u 54.8 9.5 0.00021 30.0 2.0 30 118-147 3-33 (98)
236 PLN02799 Molybdopterin synthas 54.4 43 0.00092 25.3 5.7 57 163-224 19-78 (82)
237 cd06396 PB1_NBR1 The PB1 domai 54.1 34 0.00073 26.1 4.8 37 235-273 6-44 (81)
238 cd05992 PB1 The PB1 domain is 54.0 36 0.00078 25.4 5.2 39 237-275 8-47 (81)
239 PF14847 Ras_bdg_2: Ras-bindin 54.0 21 0.00044 28.8 3.9 36 307-342 3-38 (105)
240 smart00144 PI3K_rbd PI3-kinase 53.1 83 0.0018 25.3 7.4 64 390-453 28-105 (108)
241 smart00144 PI3K_rbd PI3-kinase 53.0 81 0.0018 25.4 7.3 63 11-73 29-105 (108)
242 TIGR01682 moaD molybdopterin c 52.7 76 0.0016 23.7 6.8 58 164-226 17-78 (80)
243 PF00788 RA: Ras association ( 51.2 51 0.0011 25.1 5.9 33 240-272 18-52 (93)
244 TIGR03027 pepcterm_export puta 51.0 1.7E+02 0.0036 25.5 12.8 143 287-451 1-162 (165)
245 PF00788 RA: Ras association ( 50.7 53 0.0012 25.0 5.9 33 392-424 18-52 (93)
246 PF11069 DUF2870: Protein of u 50.6 15 0.00032 28.9 2.4 28 42-70 3-30 (98)
247 KOG4250 TANK binding protein k 50.4 40 0.00086 36.3 6.3 44 83-126 321-364 (732)
248 cd01768 RA RA (Ras-associating 50.3 1.1E+02 0.0024 23.1 7.9 29 9-37 11-39 (87)
249 TIGR01687 moaD_arch MoaD famil 49.4 1.1E+02 0.0023 23.3 7.3 61 163-227 16-87 (88)
250 PF02991 Atg8: Autophagy prote 49.0 32 0.0007 27.6 4.3 43 396-438 38-81 (104)
251 cd01764 Urm1 Urm1-like ubuitin 49.0 40 0.00086 26.5 4.8 60 395-456 23-94 (94)
252 PRK01777 hypothetical protein; 48.9 1.3E+02 0.0028 23.7 7.8 65 380-453 3-77 (95)
253 PRK07440 hypothetical protein; 48.5 68 0.0015 23.6 5.7 62 304-375 4-65 (70)
254 PF02017 CIDE-N: CIDE-N domain 48.2 49 0.0011 25.0 4.9 49 401-452 21-71 (78)
255 cd01766 Ufm1 Urm1-like ubiquit 48.0 1.1E+02 0.0024 22.7 6.4 64 393-456 18-82 (82)
256 cd01775 CYR1_RA Ubiquitin doma 48.0 85 0.0018 24.7 6.3 37 383-419 5-41 (97)
257 PF00564 PB1: PB1 domain; Int 47.1 68 0.0015 24.0 5.9 44 79-123 4-48 (84)
258 cd01787 GRB7_RA RA (RAS-associ 47.0 78 0.0017 24.4 5.8 66 383-448 5-81 (85)
259 smart00314 RA Ras association 46.5 53 0.0012 25.1 5.2 38 2-39 6-44 (90)
260 cd06396 PB1_NBR1 The PB1 domai 45.7 66 0.0014 24.5 5.3 36 388-425 7-44 (81)
261 cd00565 ThiS ThiaminS ubiquiti 45.2 1E+02 0.0022 22.0 6.2 56 167-227 9-64 (65)
262 cd06410 PB1_UP2 Uncharacterize 45.1 73 0.0016 25.2 5.7 41 81-122 17-57 (97)
263 PF06234 TmoB: Toluene-4-monoo 44.2 1.4E+02 0.0031 22.9 6.8 61 392-452 16-84 (85)
264 PF00794 PI3K_rbd: PI3-kinase 44.1 95 0.0021 24.7 6.5 72 380-451 16-101 (106)
265 PF10787 YfmQ: Uncharacterised 44.1 60 0.0013 27.4 5.2 87 19-105 23-123 (149)
266 smart00314 RA Ras association 43.0 79 0.0017 24.2 5.7 36 237-272 14-51 (90)
267 cd01764 Urm1 Urm1-like ubuitin 42.9 32 0.0007 27.0 3.4 59 167-227 23-93 (94)
268 KOG3439 Protein conjugation fa 42.7 77 0.0017 25.6 5.4 39 164-202 46-84 (116)
269 cd01611 GABARAP Ubiquitin doma 42.2 36 0.00077 27.7 3.7 58 395-452 45-106 (112)
270 PF14732 UAE_UbL: Ubiquitin/SU 41.4 1.4E+02 0.0031 23.0 6.7 52 248-299 8-68 (87)
271 TIGR02958 sec_mycoba_snm4 secr 41.2 1.1E+02 0.0023 31.7 7.8 71 230-301 4-81 (452)
272 PF10209 DUF2340: Uncharacteri 41.0 59 0.0013 26.8 4.7 56 169-224 22-108 (122)
273 KOG2982 Uncharacterized conser 38.5 47 0.001 32.2 4.3 56 319-374 352-415 (418)
274 PF03671 Ufm1: Ubiquitin fold 38.2 1E+02 0.0022 22.8 4.9 57 393-449 18-75 (76)
275 KOG2689 Predicted ubiquitin re 38.1 79 0.0017 29.9 5.6 71 151-221 209-284 (290)
276 PF08825 E2_bind: E2 binding d 37.9 41 0.00088 25.9 3.2 55 395-450 1-69 (84)
277 PRK08453 fliD flagellar cappin 37.9 93 0.002 33.8 6.9 85 312-398 135-237 (673)
278 cd01787 GRB7_RA RA (RAS-associ 37.4 1.1E+02 0.0023 23.6 5.3 56 79-134 5-67 (85)
279 KOG4572 Predicted DNA-binding 37.4 45 0.00098 36.3 4.3 62 389-450 3-68 (1424)
280 cd06397 PB1_UP1 Uncharacterize 36.8 77 0.0017 24.0 4.3 38 388-425 7-44 (82)
281 smart00266 CAD Domains present 36.4 58 0.0013 24.3 3.7 49 324-375 18-68 (74)
282 PF14451 Ub-Mut7C: Mut7-C ubiq 36.3 1.4E+02 0.0029 22.8 5.8 53 238-299 22-75 (81)
283 cd06398 PB1_Joka2 The PB1 doma 35.6 1.6E+02 0.0034 23.0 6.2 65 389-453 8-88 (91)
284 TIGR01683 thiS thiamine biosyn 35.4 1.6E+02 0.0035 20.9 6.3 59 161-226 4-62 (64)
285 PF11834 DUF3354: Domain of un 34.9 50 0.0011 24.3 3.1 43 401-449 26-68 (69)
286 KOG3439 Protein conjugation fa 34.9 61 0.0013 26.1 3.7 40 11-50 45-84 (116)
287 cd06398 PB1_Joka2 The PB1 doma 34.8 1.1E+02 0.0023 23.9 5.2 40 236-275 7-52 (91)
288 smart00266 CAD Domains present 34.0 52 0.0011 24.6 3.1 34 401-434 19-54 (74)
289 KOG0007 Splicing factor 3a, su 33.2 21 0.00045 35.4 1.2 50 83-132 289-339 (341)
290 PRK08453 fliD flagellar cappin 32.8 1.3E+02 0.0027 32.8 6.9 86 235-321 134-236 (673)
291 PTZ00380 microtubule-associate 32.5 48 0.001 27.4 2.9 48 88-135 42-89 (121)
292 PRK05738 rplW 50S ribosomal pr 32.4 75 0.0016 24.8 4.0 39 390-428 20-59 (92)
293 PF02017 CIDE-N: CIDE-N domain 32.3 93 0.002 23.5 4.2 49 325-376 21-71 (78)
294 PF02192 PI3K_p85B: PI3-kinase 32.3 83 0.0018 23.8 4.0 33 241-273 2-42 (78)
295 PF00794 PI3K_rbd: PI3-kinase 32.1 1.8E+02 0.0039 23.1 6.3 70 230-299 18-101 (106)
296 PRK15078 polysaccharide export 31.5 5.5E+02 0.012 25.8 11.9 141 285-450 83-250 (379)
297 KOG0007 Splicing factor 3a, su 31.2 24 0.00053 34.9 1.3 51 387-437 289-340 (341)
298 cd01612 APG12_C Ubiquitin-like 31.0 83 0.0018 24.3 3.9 59 393-452 18-81 (87)
299 PF02824 TGS: TGS domain; Int 30.9 99 0.0021 21.8 4.1 58 3-69 1-58 (60)
300 KOG4572 Predicted DNA-binding 30.3 67 0.0015 35.0 4.3 53 9-61 3-57 (1424)
301 PF02505 MCR_D: Methyl-coenzym 30.1 2.2E+02 0.0048 24.5 6.5 106 320-439 9-120 (153)
302 cd01615 CIDE_N CIDE_N domain, 29.7 64 0.0014 24.4 3.0 34 401-434 21-56 (78)
303 TIGR03636 L23_arch archaeal ri 29.2 89 0.0019 23.6 3.7 33 391-423 15-47 (77)
304 PF02991 Atg8: Autophagy prote 29.0 2.2E+02 0.0048 22.8 6.2 44 242-285 36-80 (104)
305 PF00276 Ribosomal_L23: Riboso 28.8 62 0.0013 25.2 2.9 39 391-429 21-60 (91)
306 PF02505 MCR_D: Methyl-coenzym 28.5 3.8E+02 0.0082 23.1 7.7 110 13-136 6-121 (153)
307 TIGR00038 efp translation elon 28.3 69 0.0015 28.6 3.5 86 3-95 38-126 (184)
308 cd06539 CIDE_N_A CIDE_N domain 27.8 77 0.0017 23.9 3.1 34 401-434 21-56 (78)
309 PF10407 Cytokin_check_N: Cdc1 27.7 2E+02 0.0043 21.4 5.3 61 391-452 3-70 (73)
310 KOG2507 Ubiquitin regulatory p 27.0 1.5E+02 0.0032 30.0 5.7 78 151-228 313-395 (506)
311 PRK05738 rplW 50S ribosomal pr 26.6 81 0.0017 24.7 3.2 39 314-352 20-59 (92)
312 cd01775 CYR1_RA Ubiquitin doma 26.1 2.2E+02 0.0048 22.5 5.5 40 233-272 7-47 (97)
313 cd01615 CIDE_N CIDE_N domain, 26.1 1E+02 0.0022 23.3 3.5 49 324-375 20-70 (78)
314 PF11816 DUF3337: Domain of un 25.7 1.5E+02 0.0033 29.1 5.8 63 393-455 250-330 (331)
315 cd01776 Rin1_RA Ubiquitin doma 25.1 1E+02 0.0022 23.5 3.3 34 240-273 15-49 (87)
316 TIGR03636 L23_arch archaeal ri 24.8 91 0.002 23.5 3.1 31 314-344 14-44 (77)
317 KOG4598 Putative ubiquitin-spe 24.0 1.1E+02 0.0024 32.9 4.5 58 392-451 878-941 (1203)
318 KOG3784 Sorting nexin protein 23.9 1.3E+02 0.0029 30.0 4.8 44 3-50 112-155 (407)
319 PRK14548 50S ribosomal protein 23.5 1.3E+02 0.0029 23.1 3.8 34 390-423 21-54 (84)
320 cd06536 CIDE_N_ICAD CIDE_N dom 23.3 93 0.002 23.6 2.8 34 401-434 21-58 (80)
321 cd01782 AF6_RA_repeat1 Ubiquit 23.1 3.6E+02 0.0078 21.8 6.2 46 379-424 22-74 (112)
322 COG0299 PurN Folate-dependent 23.1 1.5E+02 0.0032 26.8 4.5 47 58-110 126-173 (200)
323 PF02192 PI3K_p85B: PI3-kinase 22.2 93 0.002 23.5 2.7 21 317-337 2-22 (78)
324 KOG2561 Adaptor protein NUB1, 21.9 52 0.0011 33.4 1.6 52 394-445 53-104 (568)
325 cd06536 CIDE_N_ICAD CIDE_N dom 21.8 1.2E+02 0.0027 23.0 3.3 49 324-375 20-72 (80)
326 PF14085 DUF4265: Domain of un 21.1 3.8E+02 0.0083 21.8 6.4 55 204-260 17-76 (117)
327 KOG3076 5'-phosphoribosylglyci 20.9 1.4E+02 0.0031 26.7 3.9 44 62-111 139-182 (206)
328 CHL00030 rpl23 ribosomal prote 20.5 1.3E+02 0.0028 23.6 3.3 34 390-423 19-52 (93)
329 cd06538 CIDE_N_FSP27 CIDE_N do 20.1 1.3E+02 0.0028 22.8 3.0 34 401-434 21-55 (79)
330 PRK06083 sulfur carrier protei 20.1 4.1E+02 0.0088 20.3 7.1 57 161-224 24-80 (84)
No 1
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.85 E-value=9.8e-21 Score=152.11 Aligned_cols=97 Identities=43% Similarity=0.627 Sum_probs=92.5
Q ss_pred ccccccccCceEEEEEEecCceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCccccc
Q 012749 360 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439 (457)
Q Consensus 360 L~~~~i~~~~~l~l~~~~~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~ 439 (457)
...+++.+-+++++..+.++.|+|+|++..|+++.++|++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy 86 (103)
T cd01802 7 PPFFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDY 86 (103)
T ss_pred CCccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHc
Confidence 34566778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEecCCC
Q 012749 440 NIQKESTLHLVLRLRGG 456 (457)
Q Consensus 440 ~i~~~~~i~l~~rl~GG 456 (457)
+|+++++|++++|++||
T Consensus 87 ~I~~~stL~l~~~l~GG 103 (103)
T cd01802 87 NISEGCTLKLVLAMRGG 103 (103)
T ss_pred CCCCCCEEEEEEecCCC
Confidence 99999999999999998
No 2
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=9e-22 Score=150.63 Aligned_cols=76 Identities=99% Similarity=1.337 Sum_probs=74.7
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecCc
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~~ 76 (457)
||+|++++.|+|++++|+|||||+++|++|++++|+|+++|+|+|+|++|+|++||++|+|+..||+|++++++++
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998877
No 3
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.82 E-value=3.5e-20 Score=148.93 Aligned_cols=99 Identities=42% Similarity=0.623 Sum_probs=93.7
Q ss_pred CccccccccccccceEEEeecCceEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCcEEEecCcccCCCCccc
Q 012749 54 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133 (457)
Q Consensus 54 ~tl~~y~I~~~sti~l~~~~~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~ 133 (457)
+.-..+++.+.+++|+++++.+.|+|+|++.+|+.+.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~ 84 (103)
T cd01802 5 KEPPFFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLN 84 (103)
T ss_pred cCCCccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHH
Confidence 34557889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcceEEEEeecc
Q 012749 134 DYNIQKESTLHLVLRLRGG 152 (457)
Q Consensus 134 ~y~i~~~s~i~l~~~~~~~ 152 (457)
+|+|.++++||+.++.+||
T Consensus 85 dy~I~~~stL~l~~~l~GG 103 (103)
T cd01802 85 DYNISEGCTLKLVLAMRGG 103 (103)
T ss_pred HcCCCCCCEEEEEEecCCC
Confidence 9999999999999987664
No 4
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.80 E-value=1.3e-19 Score=137.78 Aligned_cols=74 Identities=41% Similarity=0.618 Sum_probs=71.7
Q ss_pred eeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
|+|+|++. ++++++|++++||++||++|++.+|+|+++|+|+|+|++|+|+.||++|||+++++|++++|++||
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 78999984 689999999999999999999999999999999999999999999999999999999999999998
No 5
>PTZ00044 ubiquitin; Provisional
Probab=99.78 E-value=9.2e-19 Score=134.05 Aligned_cols=76 Identities=50% Similarity=0.822 Sum_probs=74.9
Q ss_pred eeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
|+|+|++.+|+++++++++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|+++++++|++.++++||
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~gg 76 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998
No 6
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=1.4e-19 Score=150.01 Aligned_cols=76 Identities=96% Similarity=1.328 Sum_probs=74.5
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecCc
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~~ 76 (457)
|+|||+++.|++++++|+++|||+++|+|||+++|||+++|+|+|.|++|+|+++|+||+|+.+||+|++++++++
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg 76 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998875
No 7
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.77 E-value=1.4e-18 Score=132.06 Aligned_cols=74 Identities=32% Similarity=0.618 Sum_probs=72.8
Q ss_pred eEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 383 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
|||++..|+++++++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|||+++++|++++|++||
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~gg 74 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRGG 74 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999998
No 8
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.76 E-value=1.3e-18 Score=132.24 Aligned_cols=73 Identities=36% Similarity=0.653 Sum_probs=71.6
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEee
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~ 73 (457)
|+|+|++++|++++++|++++||.++|++|+++.|+|+++|+|+|+|++|+|+++|++|+|.+++++|+++++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999875
No 9
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.76 E-value=1.6e-18 Score=131.63 Aligned_cols=74 Identities=41% Similarity=0.618 Sum_probs=70.8
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecCc
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~~ 76 (457)
|||||++. ++++++|++++||.++|++|++++|+|+++|+|+|+|+.|+|+++|++|+|.+++|+|+++++.++
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 89999984 799999999999999999999999999999999999999999999999999999999999987653
No 10
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.74 E-value=5.4e-18 Score=128.84 Aligned_cols=73 Identities=36% Similarity=0.653 Sum_probs=71.4
Q ss_pred eeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 012749 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 453 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl 453 (457)
|+|+|++.+|+++.++|++++||++||++|++++|+|+++|+|+|+|++|+|+.+|++|||+++++|++++|.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999885
No 11
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.74 E-value=6.1e-18 Score=129.58 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=74.8
Q ss_pred eeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
|+|+|++.+|+++.+++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++||+++|++|++.+|++||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998
No 12
>PTZ00044 ubiquitin; Provisional
Probab=99.74 E-value=6.1e-18 Score=129.50 Aligned_cols=75 Identities=49% Similarity=0.803 Sum_probs=73.0
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecC
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~ 75 (457)
|||||++++|+++++++++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|++.+++++|+++++++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~g 75 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRG 75 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999998765
No 13
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.74 E-value=5.7e-18 Score=129.31 Aligned_cols=74 Identities=36% Similarity=0.634 Sum_probs=71.0
Q ss_pred CeEEEEcCCCcE-EEEE-ecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeec
Q 012749 1 MQIFVKTLTGKT-ITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (457)
Q Consensus 1 ~~i~~~~~~g~~-~~~~-v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~ 74 (457)
|||||++++|++ ++++ +.+++||.++|++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|+++++.
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 999999999997 7895 8999999999999999999999999999999999999999999999999999999864
No 14
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.74 E-value=1.3e-17 Score=127.81 Aligned_cols=76 Identities=55% Similarity=0.965 Sum_probs=74.7
Q ss_pred eeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
|+|+|+..+|+++.++++++.||++||++|++..|+|++.|+|+|+|+.|+|+.+|++||+++|++|++.++++||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~gg 76 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998
No 15
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.72 E-value=3.3e-17 Score=125.49 Aligned_cols=77 Identities=25% Similarity=0.480 Sum_probs=74.8
Q ss_pred ceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012749 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 457 (457)
+|+|+|+...|+.+.+++++++||++||++|+++.++|+++|+|+|.|+.|+|+ +|++|||++|++|+++..++||.
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~~ 77 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAGL 77 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeeccccC
Confidence 589999999999999999999999999999999999999999999999999999 99999999999999999999994
No 16
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.70 E-value=2.5e-17 Score=125.10 Aligned_cols=73 Identities=32% Similarity=0.597 Sum_probs=70.7
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecC
Q 012749 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (457)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~ 75 (457)
|||++++|++++++|++++||.++|++|+++.|+|+++|+|+|+|+.|+|+++|++|+|.+++++++++++.+
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~g 73 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRG 73 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999988754
No 17
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.70 E-value=4.1e-17 Score=124.59 Aligned_cols=74 Identities=36% Similarity=0.634 Sum_probs=70.7
Q ss_pred eeeEEEeCCCCE-EEEE-ecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecC
Q 012749 381 MQIFVKTLTGKT-ITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 454 (457)
Q Consensus 381 ~~i~v~~~~g~~-~~l~-v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~ 454 (457)
|+|+|++.+|++ +.++ +.+++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++.+|+-
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 799999999997 6885 8999999999999999999999999999999999999999999999999999999874
No 18
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=3.2e-18 Score=131.25 Aligned_cols=76 Identities=99% Similarity=1.337 Sum_probs=74.6
Q ss_pred eeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
|++|+++..|++.+++|.|++||..+|++|.+..||||++|+|+|+|++|+|+.||++|||+..|||+++.|++||
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999999
No 19
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.68 E-value=1.2e-16 Score=120.06 Aligned_cols=70 Identities=39% Similarity=0.733 Sum_probs=68.1
Q ss_pred eEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 012749 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 383 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
|+|++..|+++.++|++++||++||++|++++|+|+++|+|+|+|++|+|+.+|++|||++||+|+++.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 6889999999999999999999999999999999999999999999999999999999999999999876
No 20
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.67 E-value=1.9e-16 Score=118.95 Aligned_cols=72 Identities=24% Similarity=0.356 Sum_probs=69.3
Q ss_pred ceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012749 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
.|.|+|++..|+.+.++|+|++||++||++|++..|+|+++|+|+|+|+.|+|+.||++|||++|++|||..
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 478999999999999999999999999999999999999999999999999999999999999999999864
No 21
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=4.1e-17 Score=135.39 Aligned_cols=77 Identities=95% Similarity=1.301 Sum_probs=75.5
Q ss_pred eeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012749 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 457 (457)
|+|||+.+.|++..++|.+++||..+|++|++.+|||+++|+|+|.|++|+|..+|+||+|+..+||+|++|++||.
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~ 77 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGA 77 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999995
No 22
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.67 E-value=2.3e-16 Score=120.84 Aligned_cols=75 Identities=55% Similarity=0.948 Sum_probs=72.9
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecC
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~ 75 (457)
|+|+|++++|+++.+++++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|++.+++++|++++.++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~g 75 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRG 75 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999998765
No 23
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.66 E-value=2.2e-16 Score=120.91 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=73.4
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecCc
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~~ 76 (457)
|+|+|++++|+++.+++++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|++.+++++|+++++.++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987653
No 24
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=7.4e-17 Score=109.91 Aligned_cols=70 Identities=54% Similarity=0.911 Sum_probs=68.1
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEE
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~ 70 (457)
|-|-|++++|+-+.++++|.|+|+.||++|++++||||.+|+|+|.|+++.|+.|-++|+...+|.+|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 7789999999999999999999999999999999999999999999999999999999999999999984
No 25
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.65 E-value=1.8e-16 Score=119.08 Aligned_cols=70 Identities=39% Similarity=0.733 Sum_probs=67.9
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEe
Q 012749 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (457)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~ 72 (457)
|||++++|++++++|++++||.++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++|++|++.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999764
No 26
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.65 E-value=2.5e-16 Score=118.35 Aligned_cols=70 Identities=24% Similarity=0.383 Sum_probs=68.4
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEE
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~ 70 (457)
|+|+|++..|+.+.+++++++||.++|++|+++.|+|+++|+|+|.|+.|+|+.+|++|+|.+++++||.
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999999999985
No 27
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.65 E-value=9.2e-16 Score=120.07 Aligned_cols=79 Identities=18% Similarity=0.439 Sum_probs=76.8
Q ss_pred cCceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
...|+|+|++.+|+...++|.+++|++.||.+++++.|+|+++|+|+|+|+.|+++.|+++||+++|++|++.+|++||
T Consensus 9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG 87 (87)
T cd01763 9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG 87 (87)
T ss_pred CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999999999998
No 28
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.64 E-value=5.6e-16 Score=115.70 Aligned_cols=68 Identities=37% Similarity=0.581 Sum_probs=65.8
Q ss_pred EEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012749 384 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 384 ~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
.|+...|+++.++|++++||++||++|++.+|+|+++|+|+|+|++|+|+.+|++|||+++++|+|.+
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 57888999999999999999999999999999999999999999999999999999999999999976
No 29
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.64 E-value=9.6e-16 Score=117.61 Aligned_cols=73 Identities=38% Similarity=0.705 Sum_probs=70.6
Q ss_pred eeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCC--CCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 012749 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 453 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~i--p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl 453 (457)
|+|+|++.+|+++.+++++++||++||++|++.+|+ |+++|+|+|+|+.|+|+.+|++|||++|++|++.++-
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence 789999999999999999999999999999999999 9999999999999999999999999999999998764
No 30
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.63 E-value=6.6e-16 Score=117.82 Aligned_cols=70 Identities=33% Similarity=0.652 Sum_probs=67.7
Q ss_pred CCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012749 388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 388 ~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 457 (457)
++|+++++++++++||++||.+|+..+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++.++++||-
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg~ 74 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGGR 74 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCCc
Confidence 5789999999999999999999999999999999999999999999999999999999999999999983
No 31
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.63 E-value=5.1e-16 Score=115.95 Aligned_cols=67 Identities=37% Similarity=0.606 Sum_probs=65.1
Q ss_pred EEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEE
Q 012749 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (457)
Q Consensus 5 ~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~ 71 (457)
|+.++|++++++|++++||.++|++|++++|+|+++|+|+|+|+.|+|+.++++|+|.+++++|+.+
T Consensus 3 vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 3 VRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred EEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 6889999999999999999999999999999999999999999999999999999999999999975
No 32
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.1e-16 Score=107.68 Aligned_cols=70 Identities=54% Similarity=0.911 Sum_probs=67.5
Q ss_pred eEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCcEEEecCcccCCCCcccccccccCCcceEE
Q 012749 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (457)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~ 146 (457)
|.|.|++++|+.+.+++++.|+|+.+|+++++++||||.+|+|+|+|+++.|+.|-++|++..||++|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 5688999999999999999999999999999999999999999999999999999999999999999974
No 33
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.63 E-value=9.8e-16 Score=117.30 Aligned_cols=77 Identities=25% Similarity=0.483 Sum_probs=73.1
Q ss_pred ceEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCcEEEecCcccCCCCcccccccccCCcceEEEEeecce
Q 012749 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (457)
Q Consensus 76 ~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~~~~ 153 (457)
+|+|+|++..|+.+.+++++++||++||++|+++.++|+++|+|+|+|+.|+|+ +|++|||.++++|+++....+|+
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~~ 77 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAGL 77 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeeccccC
Confidence 489999999999999999999999999999999999999999999999999999 99999999999999998876653
No 34
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.62 E-value=1.6e-15 Score=114.79 Aligned_cols=72 Identities=44% Similarity=0.704 Sum_probs=69.8
Q ss_pred eeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 012749 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
|+|+|+..+|+++.+++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++||+++|++|++..|
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999875
No 35
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.61 E-value=1.6e-15 Score=116.41 Aligned_cols=72 Identities=39% Similarity=0.725 Sum_probs=70.0
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCC--CCccceEeeccEEccCCCccccccccccccceEEEe
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gi--p~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~ 72 (457)
|+|+|++++|+++++++++++||.++|++|+++.|+ |+++|+|+|+|+.|+|+.+|++|+|.+++++++.++
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~ 74 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVS 74 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEe
Confidence 899999999999999999999999999999999999 999999999999999999999999999999998765
No 36
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.61 E-value=1.5e-15 Score=114.94 Aligned_cols=72 Identities=44% Similarity=0.704 Sum_probs=69.9
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEe
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~ 72 (457)
|+|+|++++|+++++++++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|++.+++++|++.+
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999763
No 37
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.61 E-value=1.9e-15 Score=113.39 Aligned_cols=69 Identities=57% Similarity=0.970 Sum_probs=66.3
Q ss_pred EeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecC
Q 012749 386 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 454 (457)
Q Consensus 386 ~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~ 454 (457)
++.+|+.+.++|++++||.+||.+|++..++|++.|+|+|+|+.|+|+.+|++|||++|++|++..|.|
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~~ 69 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKPR 69 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESSE
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEecC
Confidence 467899999999999999999999999999999999999999999999999999999999999999865
No 38
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.61 E-value=1.9e-15 Score=116.49 Aligned_cols=73 Identities=33% Similarity=0.474 Sum_probs=70.6
Q ss_pred ceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEE--EEcCeecCCCCcccccCCCCCCEEEEEEe
Q 012749 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l--~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
+|+|+|+...|+++.+++++++||++||.+|++..|+|+++|+| .|+|+.|+|+.+|++|||++|++|+++++
T Consensus 2 ~~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 2 GWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQ 76 (80)
T ss_pred ceEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEE
Confidence 48999999999999999999999999999999999999999999 88999999999999999999999999988
No 39
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.60 E-value=2.5e-15 Score=113.20 Aligned_cols=71 Identities=34% Similarity=0.489 Sum_probs=67.6
Q ss_pred eeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 012749 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
+.|+|++.+|+ ..+++++++||++||++|++..|+|+++|+|.|+|+.|+|+.+|++||+++|++|++++|
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 46899999997 599999999999999999999999999999999999999999999999999999999986
No 40
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.58 E-value=4e-15 Score=112.06 Aligned_cols=71 Identities=34% Similarity=0.489 Sum_probs=67.8
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEe
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~ 72 (457)
|.|+|++.+|+ .++++++++||.++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|++.+++++|++++
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 67999999997 599999999999999999999999999999999999999999999999999999999874
No 41
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.58 E-value=2.7e-15 Score=115.68 Aligned_cols=72 Identities=32% Similarity=0.451 Sum_probs=70.0
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceE--eeccEEccCCCccccccccccccceEEEe
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l--~~~g~~L~~~~tl~~y~I~~~sti~l~~~ 72 (457)
|+|+|++.+|+++++++++++||.++|++|+++.|+|+++|+| +|+|+.|+|+.+|++|++.+++++|++++
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQ 76 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEE
Confidence 7899999999999999999999999999999999999999999 89999999999999999999999999886
No 42
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.58 E-value=5.6e-15 Score=111.02 Aligned_cols=68 Identities=35% Similarity=0.543 Sum_probs=64.2
Q ss_pred eEEEeC-CCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCC-CcccccCCCCCCEEEEE
Q 012749 383 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLV 450 (457)
Q Consensus 383 i~v~~~-~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~-~tL~~~~i~~~~~i~l~ 450 (457)
|+|++. .|+++.++|++++||++||.+|++.+|+|+++|+|+|+|++|+|+ .+|++|||++|++|++.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 568888 899999999999999999999999999999999999999999987 58999999999999875
No 43
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.53 E-value=1.4e-14 Score=108.85 Aligned_cols=68 Identities=35% Similarity=0.543 Sum_probs=64.6
Q ss_pred EEEEcC-CCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCC-CccccccccccccceEE
Q 012749 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLV 70 (457)
Q Consensus 3 i~~~~~-~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~-~tl~~y~I~~~sti~l~ 70 (457)
|+|++. +|++++++|++++||.++|++|++++|+|+++|+|+|+|+.|+|+ .+|++|+|.+++++|+.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 578999 999999999999999999999999999999999999999999887 68999999999999874
No 44
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.52 E-value=3.3e-14 Score=106.60 Aligned_cols=68 Identities=56% Similarity=0.962 Sum_probs=65.7
Q ss_pred EcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEee
Q 012749 6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 6 ~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~ 73 (457)
++++|++++++|.+++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|.+|+|.+++++++++++
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 57899999999999999999999999999999999999999999999999999999999999998865
No 45
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.51 E-value=4.1e-14 Score=106.69 Aligned_cols=72 Identities=25% Similarity=0.267 Sum_probs=64.4
Q ss_pred ceeeEEEeCCCCEE--EEEecCCchHHHHHHHHhhhcC--CCCCCeEEEEcCeecCCCCcccccC--CCCCCEEEEEE
Q 012749 380 GMQIFVKTLTGKTI--TLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLVL 451 (457)
Q Consensus 380 ~~~i~v~~~~g~~~--~l~v~~~~tV~~lK~~i~~~~~--ip~~~q~l~~~g~~L~d~~tL~~~~--i~~~~~i~l~~ 451 (457)
++.++|++.+++.+ .+++++++||.+||++|++..+ .|+++|+|+|.|+.|+|+.||++|+ +.+|.+|||+.
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 47899999999984 5555899999999999999874 4579999999999999999999996 99999999985
No 46
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.51 E-value=3e-14 Score=108.70 Aligned_cols=68 Identities=32% Similarity=0.655 Sum_probs=65.5
Q ss_pred CCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecC
Q 012749 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (457)
Q Consensus 8 ~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~ 75 (457)
++|++++++|++++||.++|++|+...|+|++.|+|+|+|+.|+|+++|++|++.+++++|+++++++
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~g 72 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERG 72 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCC
Confidence 68999999999999999999999999999999999999999999999999999999999999998765
No 47
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.50 E-value=5.4e-14 Score=106.04 Aligned_cols=70 Identities=29% Similarity=0.469 Sum_probs=66.3
Q ss_pred eeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012749 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
++|+|++. |+.+.+++++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++..
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 46889987 89999999999999999999999999999999999999999999999999999999998863
No 48
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.49 E-value=4.3e-14 Score=106.59 Aligned_cols=71 Identities=25% Similarity=0.282 Sum_probs=63.7
Q ss_pred CeEEEEcCCCcE--EEEEecCCCcHHHHHHHHhhhhC--CCCccceEeeccEEccCCCcccccc--ccccccceEEE
Q 012749 1 MQIFVKTLTGKT--ITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLVL 71 (457)
Q Consensus 1 ~~i~~~~~~g~~--~~~~v~~~dtv~~ik~ki~~~~g--ip~~~q~l~~~g~~L~~~~tl~~y~--I~~~sti~l~~ 71 (457)
|.++|++++|+. |++++++++||.++|++|.+..+ .|+++|+|+|.|+.|+|+.||++|. +.++.|+|||.
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 578999999999 55566899999999999998874 5579999999999999999999995 99999999974
No 49
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.49 E-value=8.7e-14 Score=108.88 Aligned_cols=76 Identities=18% Similarity=0.467 Sum_probs=73.2
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecCc
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~~ 76 (457)
|+|+|++++|+..+++|++++|+..||++++++.|+|+++|+|+|+|+.|+++.|+++|++.++++|++++++.++
T Consensus 12 i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG 87 (87)
T cd01763 12 INLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG 87 (87)
T ss_pred EEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999887653
No 50
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.42 E-value=3.8e-13 Score=101.37 Aligned_cols=70 Identities=29% Similarity=0.469 Sum_probs=65.9
Q ss_pred eEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCcEEEecCcccCCCCcccccccccCCcceEEE
Q 012749 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (457)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~ 147 (457)
|+|+|++. |+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|++.+|++|+++.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 57889886 89999999999999999999999999999999999999999999999999999999998863
No 51
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.41 E-value=5.6e-13 Score=100.66 Aligned_cols=69 Identities=23% Similarity=0.440 Sum_probs=63.3
Q ss_pred eeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEE---cCeecCCCCcccccCCCCCCEEEEE
Q 012749 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~---~g~~L~d~~tL~~~~i~~~~~i~l~ 450 (457)
|.|.|+ ..|+++.++|++++||++||++|++.+|+|+++|+|+| .|+.+.|+.+|++|+|++|+.|.|.
T Consensus 1 ~~i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVK-WGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 346666 46889999999999999999999999999999999996 8999999999999999999999875
No 52
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.40 E-value=7.1e-13 Score=97.64 Aligned_cols=64 Identities=61% Similarity=0.864 Sum_probs=61.2
Q ss_pred eeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCC
Q 012749 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 445 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~ 445 (457)
|+|+|++.+ +.+.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 689999988 6899999999999999999999999999999999999999999999999999885
No 53
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.39 E-value=7.4e-13 Score=100.00 Aligned_cols=69 Identities=23% Similarity=0.440 Sum_probs=64.1
Q ss_pred eEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCcEEEe---cCcccCCCCcccccccccCCcceEE
Q 012749 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLV 146 (457)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~---~g~~L~d~~tl~~y~i~~~s~i~l~ 146 (457)
|.|.|+ .+|+.+.++|++++||++||++|++..|+|+++|+|+| .|+.|+|+.+|++|+|.+|+.|+++
T Consensus 1 ~~i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVK-WGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 456776 68899999999999999999999999999999999996 8999999999999999999998876
No 54
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.38 E-value=1.2e-12 Score=98.86 Aligned_cols=65 Identities=29% Similarity=0.364 Sum_probs=59.3
Q ss_pred EeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecC-CCCcccccCCC-CCCEEEEEE
Q 012749 386 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQ-KESTLHLVL 451 (457)
Q Consensus 386 ~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~-d~~tL~~~~i~-~~~~i~l~~ 451 (457)
+...|.+++++|++++||++||.+|++++|+||++|+| |+|+.|. |+.+|++||++ +|++++|.+
T Consensus 8 ~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 8 AQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred cccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 34567899999999999999999999999999999999 9999995 66899999999 889999864
No 55
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.37 E-value=1.1e-12 Score=99.12 Aligned_cols=69 Identities=29% Similarity=0.372 Sum_probs=62.1
Q ss_pred eEEEEc--CCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEcc-CCCcccccccc-ccccceEEE
Q 012749 2 QIFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQ-KESTLHLVL 71 (457)
Q Consensus 2 ~i~~~~--~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~-~~~tl~~y~I~-~~sti~l~~ 71 (457)
.++|++ ..|++++++|++++||.+||++|++++|+|++.|+| |+|+.|. |+++|++|++. +++++||.+
T Consensus 2 ~~~~~~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 2 NVSVEDAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred EEEEeccccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 466765 578999999999999999999999999999999999 9999995 67999999998 779999864
No 56
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.33 E-value=1.7e-12 Score=96.42 Aligned_cols=55 Identities=33% Similarity=0.549 Sum_probs=50.0
Q ss_pred ec-CCchHHHHHHHHhhhc--CCC-CCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012749 397 VE-SSDTIDNVKAKIQDKE--GIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 397 v~-~~~tV~~lK~~i~~~~--~ip-~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
|+ .++||.+||++|+++. |++ +++|+|+|.|+.|+|++||++|||++|++|+|+.
T Consensus 16 ~~~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 16 VSPGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred cCCccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 44 4679999999999995 575 9999999999999999999999999999999975
No 57
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.31 E-value=4e-12 Score=93.60 Aligned_cols=64 Identities=61% Similarity=0.864 Sum_probs=61.5
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccc
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 65 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~s 65 (457)
|+|+|++.+ +++.++|++++||.++|++|+++.|+|++.|+|+|+|+.|.|+.+|++|++.+++
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 899999998 7999999999999999999999999999999999999999999999999998775
No 58
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.30 E-value=2.7e-12 Score=95.35 Aligned_cols=53 Identities=32% Similarity=0.547 Sum_probs=49.0
Q ss_pred CCchHHHHHHHHhhhh--CCC-CCceEEEECCeecccCccccccCcCcCcEEEEEE
Q 012749 171 SSDTIDNVKAKIQDKE--GIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223 (457)
Q Consensus 171 ~~~tV~~lK~~I~~~~--gip-~~~q~L~~~g~~L~d~~tL~~y~I~~~~~i~l~~ 223 (457)
.++||.+||++|+++. |++ +++|||+|+|+.|+|++||++|||++|++|||+.
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 5789999999999995 575 9999999999999999999999999999999874
No 59
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.28 E-value=2.6e-12 Score=101.85 Aligned_cols=76 Identities=28% Similarity=0.401 Sum_probs=65.7
Q ss_pred CceEEEEEccCCcEE-EEEEcCCCCHHHHHHHHh-----hhhCCC--CCCcEEEecCcccCCCCcccccc------cccC
Q 012749 75 GGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQ-----DKEGIP--PDQQRLIFAGKQLEDGRTLADYN------IQKE 140 (457)
Q Consensus 75 ~~~~i~vk~~~g~~~-~l~v~~~~tV~~lK~~i~-----~~~gip--~~~q~L~~~g~~L~d~~tl~~y~------i~~~ 140 (457)
+.+.|.++..+|..+ +..+.+++||+++|++|+ +++|+| +++|+|+|+||.|+|++||++|+ +...
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~ 82 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGV 82 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCc
Confidence 356778888888765 678899999999999999 555666 99999999999999999999999 7777
Q ss_pred CcceEEEEee
Q 012749 141 STLHLVLRLR 150 (457)
Q Consensus 141 s~i~l~~~~~ 150 (457)
.|+|+++++.
T Consensus 83 ~TmHvvlr~~ 92 (113)
T cd01814 83 ITMHVVVQPP 92 (113)
T ss_pred eEEEEEecCC
Confidence 8999999864
No 60
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.27 E-value=3.8e-12 Score=100.93 Aligned_cols=73 Identities=27% Similarity=0.375 Sum_probs=64.0
Q ss_pred eEEEEcCCCcE-EEEEecCCCcHHHHHHHHh-----hhhCCC--CccceEeeccEEccCCCcccccc------ccccccc
Q 012749 2 QIFVKTLTGKT-ITLEVESSDTIDNVKAKIQ-----DKEGIP--PDQQRLIFAGKQLEDGRTLADYN------IQKESTL 67 (457)
Q Consensus 2 ~i~~~~~~g~~-~~~~v~~~dtv~~ik~ki~-----~~~gip--~~~q~l~~~g~~L~~~~tl~~y~------I~~~sti 67 (457)
.|-|+..+|.- =+..+.++|||.++|++|+ +++|+| +++|+|+|+|++|+|++||++|+ +...+|+
T Consensus 6 e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~Tm 85 (113)
T cd01814 6 EIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVITM 85 (113)
T ss_pred EEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceEE
Confidence 46677888853 3578889999999999999 666777 99999999999999999999999 8889999
Q ss_pred eEEEeec
Q 012749 68 HLVLRLR 74 (457)
Q Consensus 68 ~l~~~~~ 74 (457)
|+++++.
T Consensus 86 Hvvlr~~ 92 (113)
T cd01814 86 HVVVQPP 92 (113)
T ss_pred EEEecCC
Confidence 9999865
No 61
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.27 E-value=1.1e-11 Score=121.99 Aligned_cols=72 Identities=31% Similarity=0.618 Sum_probs=69.4
Q ss_pred eeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcC---CCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 012749 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~---ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
|+|+||+..|+++.++|++++||.+||.+|++..| +|+++|+|+|.|+.|+|+++|++|||+++++|++.+.
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~ 75 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVS 75 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEec
Confidence 78999999999999999999999999999999998 9999999999999999999999999999999988765
No 62
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.26 E-value=8.1e-12 Score=123.00 Aligned_cols=72 Identities=31% Similarity=0.618 Sum_probs=69.6
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhC---CCCccceEeeccEEccCCCccccccccccccceEEEe
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~g---ip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~ 72 (457)
|+|+||+++|++++++|++++||.+||++|++..| +|+++|+|+|+|+.|+|+++|++|+|.+++++++.+.
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~ 75 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVS 75 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEec
Confidence 89999999999999999999999999999999998 9999999999999999999999999999999888765
No 63
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.17 E-value=1e-10 Score=87.37 Aligned_cols=67 Identities=67% Similarity=0.992 Sum_probs=63.2
Q ss_pred EEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012749 385 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 385 v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
|+..+|+.+.+.+++++||.+||.+|+..+|+|++.|+|.|+|+.|+|+.+|++|++.+++.|++..
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 5666899999999999999999999999999999999999999999999999999999999999864
No 64
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.17 E-value=1e-10 Score=88.28 Aligned_cols=71 Identities=34% Similarity=0.633 Sum_probs=66.0
Q ss_pred eeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCC-CCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012749 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~-~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
|+|++++.+|+.+.+.|.+++++..|+..+++..|+|+ +.++|.|+|+.|+++.|++++|+++|++|++.+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 67999999999999999999999999999999999999 999999999999999999999999999999864
No 65
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.15 E-value=5.3e-11 Score=91.32 Aligned_cols=62 Identities=27% Similarity=0.328 Sum_probs=57.2
Q ss_pred EEEEEeecCccHHHHHHHhhcccCCCCCCceEEecCeec-cCCCcccccccccCceEEEEEEe
Q 012749 316 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKESTLHLVLRL 377 (457)
Q Consensus 316 ~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L-~d~~~L~~~~i~~~~~l~l~~~~ 377 (457)
..+++|++++||++||.+|.+++++||+.|+|.++|..| +|++||++||+.++|+++|..+.
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llide 78 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADE 78 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecC
Confidence 356889999999999999999999999999999999988 77899999999999999998653
No 66
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.15 E-value=8.8e-11 Score=90.11 Aligned_cols=62 Identities=27% Similarity=0.314 Sum_probs=57.2
Q ss_pred EEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCC-CCcccccCCCCCCEEEEEEec
Q 012749 392 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLRL 453 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d-~~tL~~~~i~~~~~i~l~~rl 453 (457)
...++|++++||.+||.+|+..+++||.+|+|.|+|+.|.| ..||++|||.++|.|.|.+..
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llide 78 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADE 78 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecC
Confidence 46789999999999999999999999999999999999975 569999999999999998753
No 67
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.10 E-value=1.2e-10 Score=114.66 Aligned_cols=73 Identities=37% Similarity=0.565 Sum_probs=69.7
Q ss_pred ceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 012749 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 453 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl 453 (457)
.++|.|++.++ .+.+.|..+.||.+||+.|...+++|+++++|+|.||.|+|+.||..|||++|+||||+.+.
T Consensus 15 ~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~ 87 (493)
T KOG0010|consen 15 LIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKS 87 (493)
T ss_pred eeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEecc
Confidence 46799999988 79999999999999999999999999999999999999999999999999999999999875
No 68
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.07 E-value=2e-10 Score=112.98 Aligned_cols=74 Identities=36% Similarity=0.565 Sum_probs=69.9
Q ss_pred ceeeeeeecCCceEEEeecCCchHHHHHHHHhhhhCCCCCceEEEECCeecccCccccccCcCcCcEEEEEEEec
Q 012749 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (457)
Q Consensus 152 ~~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~I~~~~~i~l~~~~~ 226 (457)
.+.|+||+.+. ...+.|..+.||.+||+.|...+++|+++++|||+||+|+|+.||..|||++|.||||+.+..
T Consensus 15 ~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 15 LIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred eeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence 46789999888 789999999999999999999999999999999999999999999999999999999999854
No 69
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.04 E-value=4.9e-10 Score=83.65 Aligned_cols=67 Identities=67% Similarity=0.992 Sum_probs=62.9
Q ss_pred EEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCcEEEecCcccCCCCcccccccccCCcceEEE
Q 012749 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (457)
Q Consensus 81 vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~ 147 (457)
|+..+|+.+.++++++.||.+||++|+...|+|++.|+|.|+|+.|+|+.+|.+|++.+++.|++..
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 5667899999999999999999999999999999999999999999999999999999999988764
No 70
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.02 E-value=1.2e-09 Score=82.43 Aligned_cols=73 Identities=84% Similarity=1.127 Sum_probs=69.4
Q ss_pred eEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeec
Q 012749 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (457)
Q Consensus 2 ~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~ 74 (457)
++++.+..|+++++++.++++|..+|.+|..+.|+|.+.|++.+.|+.|+|+.++.+|+|..+++++++.++.
T Consensus 1 ~~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 1 QIFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred CEEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 4788999999999999999999999999999999999999999999999999999999999999999987754
No 71
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.01 E-value=6.6e-10 Score=83.83 Aligned_cols=71 Identities=34% Similarity=0.633 Sum_probs=66.1
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCC-ccceEeeccEEccCCCccccccccccccceEEE
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~-~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~ 71 (457)
|+|+|+..+|+.+.+.|.+++++..++++..++.|+|+ +..+|+|+|+.|+++.|+++|++.+++++++++
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 78999999999999999999999999999999999999 999999999999999999999999999999864
No 72
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.00 E-value=6e-10 Score=104.21 Aligned_cols=73 Identities=38% Similarity=0.667 Sum_probs=69.1
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhC--CCCccceEeeccEEccCCCccccccccccccceEEEee
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~g--ip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~ 73 (457)
|.|+|||+.|.+|++++.|++||.++|.+|+...| .|..+|.|+|+|+.|.|+.++.+|+|..++-+.+.+.-
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK 75 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSK 75 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEec
Confidence 89999999999999999999999999999999988 99999999999999999999999999999987776643
No 73
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=98.97 E-value=7.8e-10 Score=103.45 Aligned_cols=74 Identities=38% Similarity=0.657 Sum_probs=70.1
Q ss_pred eEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhC--CCCCCcEEEecCcccCCCCcccccccccCCcceEEEEee
Q 012749 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (457)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~g--ip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~ 150 (457)
|.|+||++.+..|++++.+++||.++|.+|+...| .|+.+|+|+|+|+.|.|+.++.+|++.+++.|-+++...
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence 68999999999999999999999999999999988 999999999999999999999999999999888887543
No 74
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.94 E-value=6.8e-09 Score=78.18 Aligned_cols=74 Identities=84% Similarity=1.159 Sum_probs=70.2
Q ss_pred eEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 383 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
+++.+..|+...+++.+..+|..+|.+|+...|+|++.|++.+.|+.|+|+.+|++|+|..++++++..+++++
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~~~ 75 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLRGG 75 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 56777899999999999999999999999999999999999999999999999999999999999999998764
No 75
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.91 E-value=7.2e-09 Score=80.35 Aligned_cols=69 Identities=22% Similarity=0.401 Sum_probs=57.0
Q ss_pred eeEEEeC-CCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEE-EcCe-----ec-CCCCcccccCCCCCCEEEEE
Q 012749 382 QIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK-----QL-EDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 382 ~i~v~~~-~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~-~~g~-----~L-~d~~tL~~~~i~~~~~i~l~ 450 (457)
.|+|... +....+.+++++.||++||.+++..+|+||+.|+|. |.|+ .| +|+.+|++||+++|++||+.
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 4555543 333455669999999999999999999999999995 7877 56 57789999999999999986
No 76
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.83 E-value=1.1e-08 Score=80.78 Aligned_cols=72 Identities=29% Similarity=0.432 Sum_probs=61.5
Q ss_pred eeEEEeCC-CCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCC-------CCCCEEEEEEec
Q 012749 382 QIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-------QKESTLHLVLRL 453 (457)
Q Consensus 382 ~i~v~~~~-g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i-------~~~~~i~l~~rl 453 (457)
.+|++-.. ..++.+++.+++||.+||.+|+.....||++|+|+..+..|+|++||++||+ +...++-|.+|.
T Consensus 2 dvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r~ 81 (119)
T cd01788 2 DVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFRS 81 (119)
T ss_pred ceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEec
Confidence 34554333 3357779999999999999999999999999999987888999999999999 678899888884
No 77
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.78 E-value=2.8e-08 Score=77.80 Aligned_cols=70 Identities=27% Similarity=0.565 Sum_probs=56.8
Q ss_pred eeeEEEeCCC--CEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEc----Ce---ec-CCCCcccccCCCCCCEEEEE
Q 012749 381 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----GK---QL-EDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 381 ~~i~v~~~~g--~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~----g~---~L-~d~~tL~~~~i~~~~~i~l~ 450 (457)
+.|+|..... .....+++++.||++||.+|+..+|+|++.|+|.+. +. .+ +|+.+|.+||+++|+.|++.
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 3567766544 588999999999999999999999999999999886 11 34 36789999999999999985
No 78
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.68 E-value=7.4e-08 Score=74.67 Aligned_cols=70 Identities=21% Similarity=0.377 Sum_probs=57.5
Q ss_pred EEEEEcc-CCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCcEEE-ecCc-----cc-CCCCcccccccccCCcceEEE
Q 012749 78 QIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK-----QL-EDGRTLADYNIQKESTLHLVL 147 (457)
Q Consensus 78 ~i~vk~~-~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~-~~g~-----~L-~d~~tl~~y~i~~~s~i~l~~ 147 (457)
.|+|... +.......++++.||.+||++++...|+||..|+|. |.|+ .| +|+.+|++|++.+|++||+.-
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD 80 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID 80 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence 4555432 233455669999999999999999999999999995 7887 45 688999999999999999874
No 79
>PLN02560 enoyl-CoA reductase
Probab=98.60 E-value=1e-07 Score=91.87 Aligned_cols=69 Identities=32% Similarity=0.560 Sum_probs=61.6
Q ss_pred eeeEEEeCCCCEE---EEEecCCchHHHHHHHHhhhcCC-CCCCeEEEEc---C----eecCCCCcccccCCCCCCEEEE
Q 012749 381 MQIFVKTLTGKTI---TLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA---G----KQLEDGRTLADYNIQKESTLHL 449 (457)
Q Consensus 381 ~~i~v~~~~g~~~---~l~v~~~~tV~~lK~~i~~~~~i-p~~~q~l~~~---g----~~L~d~~tL~~~~i~~~~~i~l 449 (457)
|+|.|+..+|+.. ++++++++||+|||.+|++..++ ++++|+|.+. | +.|+|+++|++||+++|++|++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 6788998888887 79999999999999999999987 8999999983 3 4789999999999999998775
No 80
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.60 E-value=2.1e-07 Score=67.40 Aligned_cols=73 Identities=27% Similarity=0.395 Sum_probs=64.8
Q ss_pred eeeeeeecCCceEEEeecCCchHHHHHHHHhhhhCCCCCceEEEEC---C--eecccCccccccCcCcCcEEEEEEEec
Q 012749 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLRLR 226 (457)
Q Consensus 153 ~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~---g--~~L~d~~tL~~y~I~~~~~i~l~~~~~ 226 (457)
++|+|+..++...++.|+|..+|..+|++|...+|++- .|||.|. | ..|.+..+|++|||..+..|.++.+.+
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT~p 78 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLETFP 78 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEecCC
Confidence 47889999999999999999999999999999999998 8999986 2 457899999999999999888876543
No 81
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.60 E-value=1.1e-07 Score=75.18 Aligned_cols=73 Identities=32% Similarity=0.458 Sum_probs=63.3
Q ss_pred CeEEEEcCCCc-EEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccc-------cccccceEEEe
Q 012749 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-------QKESTLHLVLR 72 (457)
Q Consensus 1 ~~i~~~~~~g~-~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I-------~~~sti~l~~~ 72 (457)
|.+|+..-.-| |+.+++++++||.++|++|+.-...|++.|+|+-.+..|+|++||.||++ +.-.++-|.++
T Consensus 1 MdvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r 80 (119)
T cd01788 1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFR 80 (119)
T ss_pred CceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEe
Confidence 78999886655 67799999999999999999999999999999977888999999999999 45556666665
Q ss_pred e
Q 012749 73 L 73 (457)
Q Consensus 73 ~ 73 (457)
-
T Consensus 81 ~ 81 (119)
T cd01788 81 S 81 (119)
T ss_pred c
Confidence 3
No 82
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.53 E-value=3.4e-07 Score=74.36 Aligned_cols=75 Identities=29% Similarity=0.492 Sum_probs=56.2
Q ss_pred ceEEEEEccCCc-EEEEEEcCCCCHHHHHHHHhhhhC-------CCCCCcEEEecCcccCCCCcccccccccCC------
Q 012749 76 GMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEG-------IPPDQQRLIFAGKQLEDGRTLADYNIQKES------ 141 (457)
Q Consensus 76 ~~~i~vk~~~g~-~~~l~v~~~~tV~~lK~~i~~~~g-------ip~~~q~L~~~g~~L~d~~tl~~y~i~~~s------ 141 (457)
.+.|.++..+|+ ...+..++++||++||+.|...+. ..++..+|+|.||.|+|+.+|++|.+..++
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~ 81 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPT 81 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--E
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCE
Confidence 356677778998 788999999999999999987542 135678999999999999999999987766
Q ss_pred cceEEEEee
Q 012749 142 TLHLVLRLR 150 (457)
Q Consensus 142 ~i~l~~~~~ 150 (457)
++|+++++.
T Consensus 82 vmHlvvrp~ 90 (111)
T PF13881_consen 82 VMHLVVRPN 90 (111)
T ss_dssp EEEEEE-SS
T ss_pred EEEEEecCC
Confidence 678877653
No 83
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=9e-07 Score=68.53 Aligned_cols=79 Identities=18% Similarity=0.451 Sum_probs=74.2
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 457 (457)
..+++.|+..+|....+.|..+++..-|+..-+++.|++.+..|+.|+|+.+.+.+|-++.++++|+.|.+.....||+
T Consensus 19 ~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG~ 97 (99)
T KOG1769|consen 19 EHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGGF 97 (99)
T ss_pred ceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccCC
Confidence 3456778888888889999999999999999999999999999999999999999999999999999999999999996
No 84
>PLN02560 enoyl-CoA reductase
Probab=98.50 E-value=2e-07 Score=89.87 Aligned_cols=69 Identities=32% Similarity=0.560 Sum_probs=62.6
Q ss_pred CeEEEEcCCCcEE---EEEecCCCcHHHHHHHHhhhhCC-CCccceEeec---c----EEccCCCccccccccccccceE
Q 012749 1 MQIFVKTLTGKTI---TLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA---G----KQLEDGRTLADYNIQKESTLHL 69 (457)
Q Consensus 1 ~~i~~~~~~g~~~---~~~v~~~dtv~~ik~ki~~~~gi-p~~~q~l~~~---g----~~L~~~~tl~~y~I~~~sti~l 69 (457)
|+|.|+..+|+++ ++++++++||++||.+|+++.++ ++++|+|.+. | ..|+|+.+|++|++.+++++++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 8999999999998 79999999999999999999986 8999999983 3 3889999999999999998665
No 85
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.50 E-value=7.2e-07 Score=72.48 Aligned_cols=74 Identities=30% Similarity=0.504 Sum_probs=55.1
Q ss_pred eeeeeeecCCc-eEEEeecCCchHHHHHHHHhhhhC-------CCCCceEEEECCeecccCccccccCcCcCc------E
Q 012749 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEG-------IPPDQQRLIFAGKQLEDGRTLADYNIQKES------T 218 (457)
Q Consensus 153 ~~i~V~~~~g~-~~~~~v~~~~tV~~lK~~I~~~~g-------ip~~~q~L~~~g~~L~d~~tL~~y~I~~~~------~ 218 (457)
+.+.+...+|. ..++.+++++||++||+.|...|. ..+...||||.||.|+|+.+|+++.+..+. +
T Consensus 3 i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~v 82 (111)
T PF13881_consen 3 IELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTV 82 (111)
T ss_dssp EEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EE
T ss_pred EEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEE
Confidence 34455566888 778999999999999999998762 234678999999999999999999987765 6
Q ss_pred EEEEEEec
Q 012749 219 LHLVLRLR 226 (457)
Q Consensus 219 i~l~~~~~ 226 (457)
+||+++++
T Consensus 83 mHlvvrp~ 90 (111)
T PF13881_consen 83 MHLVVRPN 90 (111)
T ss_dssp EEEEE-SS
T ss_pred EEEEecCC
Confidence 78888765
No 86
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.50 E-value=2.2e-07 Score=70.91 Aligned_cols=71 Identities=28% Similarity=0.426 Sum_probs=45.4
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcC---eec--CCCCcccccCCCCCCEEEEE
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQL--EDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g---~~L--~d~~tL~~~~i~~~~~i~l~ 450 (457)
..|-|.|++.+| .+-+++++++|+.+|+++|++..++|+..|.|+.+. ..+ .++.||+++|++.||.|+|.
T Consensus 3 ~~milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 3 SSMILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp ---EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred ccEEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 467888999988 688899999999999999999999999999987542 245 46789999999999999874
No 87
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=2.3e-07 Score=98.61 Aligned_cols=73 Identities=34% Similarity=0.592 Sum_probs=69.8
Q ss_pred eeeeeecCCceEEEeecCCchHHHHHHHHhhhhCCCCCceEEEECCeecccCccccccCcCcCcEEEEEEEecC
Q 012749 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (457)
Q Consensus 154 ~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~I~~~~~i~l~~~~~~ 227 (457)
.|.||+++.++.++.+...+||.++|..|..+.+|+.+.||+||.||+|.|++++++|+| +|.+|||+-|++.
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp 76 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPP 76 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCC
Confidence 378999999999999999999999999999999999999999999999999999999999 9999999999653
No 88
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.45 E-value=8.7e-07 Score=69.35 Aligned_cols=71 Identities=27% Similarity=0.535 Sum_probs=55.7
Q ss_pred eeeeeecCC--ceEEEeecCCchHHHHHHHHhhhhCCCCCceEEEEC----C---eec-ccCccccccCcCcCcEEEEEE
Q 012749 154 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----G---KQL-EDGRTLADYNIQKESTLHLVL 223 (457)
Q Consensus 154 ~i~V~~~~g--~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~----g---~~L-~d~~tL~~y~I~~~~~i~l~~ 223 (457)
.|+|..... ......++++.||++||.+++...|+|++.|+|.+. + ..+ +|..+|.+||+.+|.+||+.-
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D 82 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVD 82 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEe
Confidence 445544433 478899999999999999999999999999999865 1 223 567999999999999999875
Q ss_pred E
Q 012749 224 R 224 (457)
Q Consensus 224 ~ 224 (457)
.
T Consensus 83 ~ 83 (87)
T PF14560_consen 83 T 83 (87)
T ss_dssp -
T ss_pred C
Confidence 4
No 89
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=3.5e-07 Score=97.18 Aligned_cols=72 Identities=35% Similarity=0.607 Sum_probs=68.9
Q ss_pred eeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecC
Q 012749 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 454 (457)
Q Consensus 382 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~ 454 (457)
++.||+++.++.++.+...+||.+||..|.++.+|+.+.||++|+|+.|.|++++.+||| +|-+|||+-|..
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverpp 75 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPP 75 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCC
Confidence 488999999999999999999999999999999999999999999999999999999999 999999998843
No 90
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.37 E-value=1e-06 Score=67.21 Aligned_cols=52 Identities=29% Similarity=0.379 Sum_probs=47.3
Q ss_pred cCCchHHHHHHHHhhhcC-CCCCCeEEE--EcCeecCCCCcccccCCCCCCEEEE
Q 012749 398 ESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL 449 (457)
Q Consensus 398 ~~~~tV~~lK~~i~~~~~-ip~~~q~l~--~~g~~L~d~~tL~~~~i~~~~~i~l 449 (457)
+++.||.+||..|+...+ ++++.|+|. +.|+.|.|+.+|++||+.+|++|++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 588999999999999875 589999996 7899999999999999999999986
No 91
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.32 E-value=1.8e-06 Score=62.62 Aligned_cols=70 Identities=27% Similarity=0.372 Sum_probs=61.3
Q ss_pred eEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCcEEEecC-----cccCCCCcccccccccCCcceEEE
Q 012749 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-----KQLEDGRTLADYNIQKESTLHLVL 147 (457)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g-----~~L~d~~tl~~y~i~~~s~i~l~~ 147 (457)
++|+|+-..+....+.|+|..+|..+|++|....|++- .|+|.|.. +.|.+..+|++|||-.+..|.|.-
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lle 75 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLE 75 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEe
Confidence 47899999999999999999999999999999999988 99999863 447899999999998777666653
No 92
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.19 E-value=7.6e-06 Score=58.88 Aligned_cols=63 Identities=46% Similarity=0.697 Sum_probs=59.2
Q ss_pred CCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012749 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 389 ~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
+|....+.++++.|+.+||.+++++.|++++.+.|+++|..+.+...+.++++.+++.|++..
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 677889999999999999999999999999999999999999999888999999999998864
No 93
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.12 E-value=5.4e-06 Score=63.21 Aligned_cols=52 Identities=29% Similarity=0.379 Sum_probs=46.4
Q ss_pred cCCCCHHHHHHHHhhhhC-CCCCCcEEE--ecCcccCCCCcccccccccCCcceE
Q 012749 94 ESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL 145 (457)
Q Consensus 94 ~~~~tV~~lK~~i~~~~g-ip~~~q~L~--~~g~~L~d~~tl~~y~i~~~s~i~l 145 (457)
+++.||.+||..|+...+ +++++|+|. +.|+.|.|+.+|++||+.+|+++++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 478899999999998875 689999995 7899999999999999999998765
No 94
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.07 E-value=6.8e-06 Score=62.76 Aligned_cols=71 Identities=28% Similarity=0.426 Sum_probs=43.3
Q ss_pred CceEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCcEEEec---Cccc--CCCCcccccccccCCcceEE
Q 012749 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQL--EDGRTLADYNIQKESTLHLV 146 (457)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~---g~~L--~d~~tl~~y~i~~~s~i~l~ 146 (457)
+.|-|.|++.+| ...+++++++|+.+|+++|++..++|.+.|.|+.+ ...+ .++.+|+++|+++|+.++|.
T Consensus 3 ~~milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 3 SSMILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp ---EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred ccEEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 457788887776 55778999999999999999999999999988643 2345 47899999999999988764
No 95
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=6.6e-06 Score=81.09 Aligned_cols=70 Identities=24% Similarity=0.424 Sum_probs=65.2
Q ss_pred eeeEEEecCCcEEEEE-eecCccHHHHHHHhhcccCCCCCCceEEecCeeccCCCcccccccccCceEEEEE
Q 012749 305 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 375 (457)
Q Consensus 305 ~~i~i~~~~g~~~~l~-v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~L~~~~i~~~~~l~l~~ 375 (457)
++|.|| |.|+.+.++ ++.++|+..+|+++...||+||++|+++..|+.+.|+..+.+++|+++.+++++-
T Consensus 4 ~~v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmG 74 (473)
T KOG1872|consen 4 DTVIVK-WGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMG 74 (473)
T ss_pred ceEeee-ecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeec
Confidence 356665 999999988 9999999999999999999999999999999999999999999999999999974
No 96
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=2.1e-06 Score=60.24 Aligned_cols=69 Identities=26% Similarity=0.398 Sum_probs=63.5
Q ss_pred eeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 012749 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 382 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~ 450 (457)
++.+.+.-|+...+.+.+++||.|+|..|++.+|-.++...|--|+..+.|.-+|++|.|.+|-.+.+.
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence 456667779999999999999999999999999999999999999999999999999999999988775
No 97
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=97.87 E-value=4.3e-05 Score=54.78 Aligned_cols=65 Identities=45% Similarity=0.653 Sum_probs=59.6
Q ss_pred cCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEE
Q 012749 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (457)
Q Consensus 7 ~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~ 71 (457)
..+|+...+.+.+++|+.++|+++.++.|++++.|.|+++|..+.+...+.+|.+..++++++..
T Consensus 4 ~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 4 LNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred ecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 34788999999999999999999999999999999999999999998888899999999988753
No 98
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=2.4e-05 Score=72.81 Aligned_cols=72 Identities=32% Similarity=0.623 Sum_probs=61.8
Q ss_pred eeeEEEeC---CCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEE-Ee
Q 012749 381 MQIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV-LR 452 (457)
Q Consensus 381 ~~i~v~~~---~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~-~r 452 (457)
|.++|+.. ....++++|+.+..|.+||+.++...|+|+++.+++|.|++|.|+.|+..|.+...|.+++. +|
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lR 76 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLR 76 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhccC
Confidence 34556543 33457889999999999999999999999999999999999999999999999988888866 44
No 99
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=2.7e-05 Score=72.43 Aligned_cols=63 Identities=33% Similarity=0.651 Sum_probs=58.0
Q ss_pred cEEEEEEcCCCCHHHHHHHHhhhhCCCCCCcEEEecCcccCCCCcccccccccCCcceEE-EEe
Q 012749 87 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV-LRL 149 (457)
Q Consensus 87 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~-~~~ 149 (457)
..++++|+.+.+|.+||+-++...|+|+++.+++|+||+|.|+.++..+.+..-|.+|++ +||
T Consensus 14 h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP 77 (446)
T KOG0006|consen 14 HGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRP 77 (446)
T ss_pred CceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhccCc
Confidence 357889999999999999999999999999999999999999999999999999999987 454
No 100
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=3.2e-05 Score=58.25 Aligned_cols=78 Identities=17% Similarity=0.359 Sum_probs=73.4
Q ss_pred ceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012749 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 457 (457)
.+.+.|...+|....+++..+++...|....+.+.|-..+..|+.|+|+.++.++|-+++++++++.|.++....||+
T Consensus 24 hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG~ 101 (103)
T COG5227 24 HINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGGA 101 (103)
T ss_pred ccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcCc
Confidence 456777788899999999999999999999999999999999999999999999999999999999999999999986
No 101
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.74 E-value=3.3e-05 Score=58.90 Aligned_cols=52 Identities=31% Similarity=0.416 Sum_probs=45.6
Q ss_pred CEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEE-cC-eecCCCCcccccCCC
Q 012749 391 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AG-KQLEDGRTLADYNIQ 442 (457)
Q Consensus 391 ~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~-~g-~~L~d~~tL~~~~i~ 442 (457)
.++-++..++.||.+||.+++....-|+++|+|+. .. ..|+|.+||++||..
T Consensus 12 ttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gft 65 (110)
T KOG4495|consen 12 TTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFT 65 (110)
T ss_pred eeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhcccc
Confidence 35677899999999999999999999999999987 33 568999999999764
No 102
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=97.72 E-value=0.00018 Score=61.71 Aligned_cols=76 Identities=30% Similarity=0.517 Sum_probs=60.7
Q ss_pred eeeEEEeCCC----CEEEEEecCCchHHHHHHHHhhhcCCCCCCe-EEEEc-Ceec--CCCCcccccCCCCC----CEEE
Q 012749 381 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFA-GKQL--EDGRTLADYNIQKE----STLH 448 (457)
Q Consensus 381 ~~i~v~~~~g----~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q-~l~~~-g~~L--~d~~tL~~~~i~~~----~~i~ 448 (457)
|+|+|.+.+| .++.+.+++++||.+|+..|.+..++|+..| .|++. ++.| .++..++.+.-.+. -+++
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 5899999999 5889999999999999999999999999985 45553 5555 35555666654433 4789
Q ss_pred EEEecCCC
Q 012749 449 LVLRLRGG 456 (457)
Q Consensus 449 l~~rl~GG 456 (457)
+..|++||
T Consensus 81 l~~rl~GG 88 (162)
T PF13019_consen 81 LSLRLRGG 88 (162)
T ss_pred EEEeccCC
Confidence 99999998
No 103
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=97.57 E-value=0.00021 Score=51.95 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=47.4
Q ss_pred ccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEE
Q 012749 235 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 297 (457)
Q Consensus 235 ~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l 297 (457)
..++++.++.+.++.++.++-++.+.++|++++++.|.|+++.++-+.+++.-|+.+|+.+.|
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 568899999999999999999999999999999999999999999999999999999998754
No 104
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.00073 Score=52.58 Aligned_cols=76 Identities=17% Similarity=0.448 Sum_probs=67.9
Q ss_pred eeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEEEeecCc
Q 012749 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304 (457)
Q Consensus 229 ~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~~~~~~ 304 (457)
+++.|+..++.++.+.|..+.....|...-|++.|++.+..+|.|+|+.+.+.+|-.+.+..+++.|.++.-+.++
T Consensus 21 i~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG 96 (99)
T KOG1769|consen 21 INLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGG 96 (99)
T ss_pred EEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccC
Confidence 4455677778899999999999999999999999999999999999999999999999999999999887654443
No 105
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.35 E-value=0.00029 Score=53.80 Aligned_cols=61 Identities=30% Similarity=0.442 Sum_probs=52.5
Q ss_pred CeEEEEcCCC-cEEEEEecCCCcHHHHHHHHhhhhCCCCccceEee-cc-EEccCCCccccccc
Q 012749 1 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AG-KQLEDGRTLADYNI 61 (457)
Q Consensus 1 ~~i~~~~~~g-~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~-~g-~~L~~~~tl~~y~I 61 (457)
|++|++.-.- .++.+..++|.||.++|+++..-..=|++.|+|+. +- ..|+|+.||.|++.
T Consensus 1 ~~~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gf 64 (110)
T KOG4495|consen 1 MDVFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGF 64 (110)
T ss_pred CceeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccc
Confidence 6788887544 46779999999999999999999999999999998 33 56899999999965
No 106
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.00014 Score=51.15 Aligned_cols=67 Identities=27% Similarity=0.407 Sum_probs=59.4
Q ss_pred EEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEE
Q 012749 231 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 297 (457)
Q Consensus 231 i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l 297 (457)
+.+...-|+++++..++.|||+++|+.|....|-.++...|-.+...+.|.-+|++|.|.+|-.+.|
T Consensus 4 v~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lel 70 (73)
T KOG3493|consen 4 VVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLEL 70 (73)
T ss_pred ehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEE
Confidence 3444556899999999999999999999999999999999988888899999999999999877654
No 107
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=97.21 E-value=0.0012 Score=48.09 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=47.2
Q ss_pred eCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEE
Q 012749 387 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 449 (457)
Q Consensus 387 ~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l 449 (457)
..+++...+.|.|++++.++-+..+.++|++++.-.|.|+++.|+-+.++...|+-+|+.+.|
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 456889999999999999999999999999999999999999999999999999999999875
No 108
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.16 E-value=0.0011 Score=50.78 Aligned_cols=69 Identities=22% Similarity=0.386 Sum_probs=48.8
Q ss_pred eeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCC------eEEE-EcCeecCCCCcccccCCCCCCEEEE
Q 012749 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ------QRLI-FAGKQLEDGRTLADYNIQKESTLHL 449 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~------q~l~-~~g~~L~d~~tL~~~~i~~~~~i~l 449 (457)
..|.|...+|+.+.+.++.+.+|++|...+.+..+.+... ..|. -+|..|.++.||+++||.+|+.+.+
T Consensus 3 ~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 3 CRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 3566666557899999999999999999999988874433 2333 4688999999999999999999986
No 109
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0013 Score=65.19 Aligned_cols=70 Identities=24% Similarity=0.424 Sum_probs=62.8
Q ss_pred eeeEEEeCCCCEEEEE-ecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012749 381 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~-v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
..|.|+ ..|+.+.++ ++.++|+..||+++.+.+|+||+.|++.+.|..+.|+--+...+|++|.+|.+..
T Consensus 4 ~~v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmG 74 (473)
T KOG1872|consen 4 DTVIVK-WGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMG 74 (473)
T ss_pred ceEeee-ecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeec
Confidence 345555 568889888 9999999999999999999999999999999999999889999999999998753
No 110
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=96.71 E-value=0.013 Score=44.95 Aligned_cols=72 Identities=22% Similarity=0.325 Sum_probs=60.9
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCC-eEEE--EcCeecCCC--CcccccCCCCCCEEEEE
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FAGKQLEDG--RTLADYNIQKESTLHLV 450 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~-q~l~--~~g~~L~d~--~tL~~~~i~~~~~i~l~ 450 (457)
....|-|+..+|+...-...+++||.+|...|......+... ..|+ |-.+.+.++ .||++.|+.+.++|.|.
T Consensus 5 ~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 5 DVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp SEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred CEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 356788999999999999999999999999999998877765 7775 456777644 59999999999999874
No 111
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=96.68 E-value=0.0073 Score=52.00 Aligned_cols=74 Identities=28% Similarity=0.482 Sum_probs=53.9
Q ss_pred CeEEEEcCCC----cEEEEEecCCCcHHHHHHHHhhhhCCCCccc-eEeec-cEEcc--CCCccccccccccc----cce
Q 012749 1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFA-GKQLE--DGRTLADYNIQKES----TLH 68 (457)
Q Consensus 1 ~~i~~~~~~g----~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q-~l~~~-g~~L~--~~~tl~~y~I~~~s----ti~ 68 (457)
|+|||.++.| .++.+.+.++.||.+++..|.+..++|...| .|.+. +..|. ++..+..+.-...+ +++
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 7999999999 6999999999999999999999999998874 45553 55663 34445555433332 344
Q ss_pred EEEeec
Q 012749 69 LVLRLR 74 (457)
Q Consensus 69 l~~~~~ 74 (457)
+..++.
T Consensus 81 l~~rl~ 86 (162)
T PF13019_consen 81 LSLRLR 86 (162)
T ss_pred EEEecc
Confidence 444444
No 112
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=96.55 E-value=0.0071 Score=46.18 Aligned_cols=68 Identities=24% Similarity=0.405 Sum_probs=48.7
Q ss_pred eEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCC------CeEEE-eCCcccCCCccccccccCCCCeEEE
Q 012749 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD------QQRLI-FAGKQLEDGRTLADYNIQKESTLHL 297 (457)
Q Consensus 230 ~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~------~q~L~-~~g~~L~d~~tl~~~~i~~~~tl~l 297 (457)
.|+|...+|+.+.+.+..+-+|.+|...+.+..+++.. ...|. -+|..|++++||++++|.+|+.+++
T Consensus 4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 45555555789999999999999999999998886332 35666 5788999999999999999999876
No 113
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=96.51 E-value=0.02 Score=43.93 Aligned_cols=72 Identities=22% Similarity=0.325 Sum_probs=59.7
Q ss_pred cceeeeeeecCCceEEEeecCCchHHHHHHHHhhhhCCCCCc-eEEE--ECCeecccC--ccccccCcCcCcEEEEE
Q 012749 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FAGKQLEDG--RTLADYNIQKESTLHLV 222 (457)
Q Consensus 151 ~~~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~-q~L~--~~g~~L~d~--~tL~~y~I~~~~~i~l~ 222 (457)
....|.|+.++|+.+.-...+++||.+|...|......+... ..|+ |-.+.+.+. .||++.|+.+++++++-
T Consensus 5 ~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 5 DVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp SEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred CEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 346788899999999999999999999999999887766654 7776 557787554 69999999999998763
No 114
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=96.28 E-value=0.0092 Score=47.29 Aligned_cols=57 Identities=21% Similarity=0.339 Sum_probs=43.0
Q ss_pred EEEEccC-CcEEEEEEc--CCCCHHHHHHHHhhhhC--CCCCCcEEEecCcccCCCCccccc
Q 012749 79 IFVKTLT-GKTITLEVE--SSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADY 135 (457)
Q Consensus 79 i~vk~~~-g~~~~l~v~--~~~tV~~lK~~i~~~~g--ip~~~q~L~~~g~~L~d~~tl~~y 135 (457)
|+|+..+ -..+.+++. ...||..||..|.+..+ ..-.+++|+|+|+.|.|+..|+..
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 3444443 234677777 78999999999999873 445678999999999998877754
No 115
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.28 E-value=0.0059 Score=54.06 Aligned_cols=62 Identities=29% Similarity=0.446 Sum_probs=56.9
Q ss_pred cCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCcEEEecCcccCCCCcccccccccCCcceE
Q 012749 84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 145 (457)
Q Consensus 84 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l 145 (457)
.+++.+.+.+...+||.++|.+++...|+.+..|+++|+|+.|-|...|.+|+|..|+...+
T Consensus 154 tT~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvl 215 (231)
T KOG0013|consen 154 TTREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVL 215 (231)
T ss_pred hhhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEE
Confidence 46788999999999999999999999999999999999999999999999999999974443
No 116
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=96.14 E-value=0.029 Score=42.86 Aligned_cols=70 Identities=21% Similarity=0.243 Sum_probs=57.6
Q ss_pred ceeeeeeecCCceEEEeecCCchHHHHHHHHhhhhCCCCCceEEE--ECCeeccc---CccccccCcCcCcEEEE
Q 012749 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 221 (457)
Q Consensus 152 ~~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~d---~~tL~~y~I~~~~~i~l 221 (457)
...|.|+.++|+.+.-....++||.+|.+.+....+.+.....|+ |-.+.+.+ +.||.+.|+..++++.+
T Consensus 4 ~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 4 QCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred eEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 457888999999999999999999999999977667666677775 55677754 47999999998888865
No 117
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=96.08 E-value=0.044 Score=41.86 Aligned_cols=72 Identities=21% Similarity=0.228 Sum_probs=58.6
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEE--EcCeecCC---CCcccccCCCCCCEEEEE
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHLV 450 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~--~~g~~L~d---~~tL~~~~i~~~~~i~l~ 450 (457)
+...|-||..+|+...-..++++||++|.+.|....+.+.....|. |-.+.+.+ +.||.+.|+.+.+++.|.
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v~ 79 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVLE 79 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEEe
Confidence 3467889999999999999999999999999977677776777775 44566754 469999999988888763
No 118
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=96.03 E-value=0.014 Score=46.21 Aligned_cols=49 Identities=24% Similarity=0.411 Sum_probs=39.0
Q ss_pred ceEEEeec--CCchHHHHHHHHhhhhC--CCCCceEEEECCeecccCcccccc
Q 012749 163 KTITLEVE--SSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADY 211 (457)
Q Consensus 163 ~~~~~~v~--~~~tV~~lK~~I~~~~g--ip~~~q~L~~~g~~L~d~~tL~~y 211 (457)
..+.+++. ...||..||..|.+..+ .....+||||+|+.|.|...|+.-
T Consensus 12 pDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 12 PDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred CCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 44666666 78899999999999883 344568999999999998777653
No 119
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=95.75 E-value=0.087 Score=39.87 Aligned_cols=69 Identities=14% Similarity=0.228 Sum_probs=53.3
Q ss_pred ceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEE--cCeecCC---CCcccccCCCCCCEEEEE
Q 012749 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLED---GRTLADYNIQKESTLHLV 450 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~--~g~~L~d---~~tL~~~~i~~~~~i~l~ 450 (457)
...|-|+..+|+...-..+.++||++|.+-|.....- .....|.. -.+.+.+ +.||.+.|+. .+.+.+.
T Consensus 2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~-~s~~~~~ 75 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLV-NEVVFQR 75 (77)
T ss_pred cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCc-cceEEEE
Confidence 4578899999999999999999999999999876543 45566653 4566754 6799999999 4555443
No 120
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.70 E-value=0.075 Score=40.48 Aligned_cols=68 Identities=22% Similarity=0.288 Sum_probs=54.2
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCC-CCCCeEEE--EcCeecCC-CCcccccCCCCCCE
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLI--FAGKQLED-GRTLADYNIQKEST 446 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~i-p~~~q~l~--~~g~~L~d-~~tL~~~~i~~~~~ 446 (457)
+...|-|+..+|+.....++.++||++|.+.|....+- ....+.|. |-.+.|.| +.||.+.|+.+.+.
T Consensus 3 p~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v 74 (79)
T cd01770 3 PTTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVI 74 (79)
T ss_pred CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEE
Confidence 45678999999999999999999999999999987643 23556665 56777864 67999999986443
No 121
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=95.68 E-value=0.019 Score=52.27 Aligned_cols=69 Identities=28% Similarity=0.401 Sum_probs=51.6
Q ss_pred eeeEEEeCCC--CEEEEEecCCchHHHHHHHHhhh-cCCCCCCeEEEE----cCeecCCCCcccccCCCCCCEEEE
Q 012749 381 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDK-EGIPPDQQRLIF----AGKQLEDGRTLADYNIQKESTLHL 449 (457)
Q Consensus 381 ~~i~v~~~~g--~~~~l~v~~~~tV~~lK~~i~~~-~~ip~~~q~l~~----~g~~L~d~~tL~~~~i~~~~~i~l 449 (457)
|.|++...++ .......+...|+.|++.++..+ ..+.+..+|+.+ .|++|-|+++|++|+..+|.+|++
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 5667765555 23335677788999999666555 578886666554 799999999999999999987765
No 122
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.47 E-value=0.099 Score=39.81 Aligned_cols=68 Identities=16% Similarity=0.317 Sum_probs=55.2
Q ss_pred eeeeeeecCCceEEEeecCCchHHHHHHHHhhhhCCCCCceEEE--ECCeeccc---CccccccCcCcCcEEEE
Q 012749 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 221 (457)
Q Consensus 153 ~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~d---~~tL~~y~I~~~~~i~l 221 (457)
..|.|+.++|+.+.-..+.++|++++.+.+....+-+ ....|+ |-.+.+.+ +.||.+.|+.+.+++.|
T Consensus 5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 4678889999999999999999999999998765433 456776 55788853 47999999999888865
No 123
>COG5417 Uncharacterized small protein [Function unknown]
Probab=95.34 E-value=0.13 Score=37.68 Aligned_cols=65 Identities=18% Similarity=0.239 Sum_probs=54.1
Q ss_pred EEeCCCCEEEEEecCCchHHHHHHHHhhhcCC--CC---CCeEEEEcCeecCCCCcccccCCCCCCEEEE
Q 012749 385 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PP---DQQRLIFAGKQLEDGRTLADYNIQKESTLHL 449 (457)
Q Consensus 385 v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~i--p~---~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l 449 (457)
.+...|.++.+.++...+|..|-..+.+...+ ++ +.++..-.++.|.++..|.+|+|.+|+.+.+
T Consensus 11 ~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 11 FTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred eEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 35667999999999999999999888887755 33 3456777899999999999999999998764
No 124
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.31 E-value=0.087 Score=40.13 Aligned_cols=68 Identities=16% Similarity=0.320 Sum_probs=55.3
Q ss_pred eeEEEecCCcEEEEEeecCccHHHHHHHhhcccCCCCCCceEE--ecCeeccC---CCcccccccccCceEEEE
Q 012749 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHLV 374 (457)
Q Consensus 306 ~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L~d---~~~L~~~~i~~~~~l~l~ 374 (457)
.|.|+..+|..+.-..+.++|+.+|.+-|....+-+ ..-.|. |+.+.+.+ +.||.+.|+.|..+|.+.
T Consensus 6 ~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v~ 78 (79)
T cd01772 6 RIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIVT 78 (79)
T ss_pred EEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEEe
Confidence 578899999999999999999999999999765543 223444 78888743 689999999999888774
No 125
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.16 E-value=0.18 Score=38.94 Aligned_cols=71 Identities=11% Similarity=0.156 Sum_probs=57.4
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcC--eecC--------CCCcccccCCCCCCEEE
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLE--------DGRTLADYNIQKESTLH 448 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g--~~L~--------d~~tL~~~~i~~~~~i~ 448 (457)
...+|-++..+|+...-....++||++|..-|... +-.++...|..+= +.+. .+.||.+.|+.+..+|.
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~ 81 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLF 81 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEE
Confidence 35678899999999899999999999999999754 4566778887653 5665 25699999999988887
Q ss_pred EE
Q 012749 449 LV 450 (457)
Q Consensus 449 l~ 450 (457)
|.
T Consensus 82 V~ 83 (85)
T cd01774 82 VQ 83 (85)
T ss_pred Ee
Confidence 64
No 126
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.13 E-value=0.035 Score=49.32 Aligned_cols=63 Identities=27% Similarity=0.422 Sum_probs=56.3
Q ss_pred CCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 012749 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 390 g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
++.+-+.+...+|+.++|.++.+..++.+..|+|+|.|..|.|...|..|+|+.|.--.+-.+
T Consensus 156 ~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqvi 218 (231)
T KOG0013|consen 156 REDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQVI 218 (231)
T ss_pred hhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEEE
Confidence 456788899999999999999999999999999999999999999999999999965554443
No 127
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=94.95 E-value=0.14 Score=38.75 Aligned_cols=67 Identities=15% Similarity=0.258 Sum_probs=51.6
Q ss_pred eeeEEEecCCcEEEEEeecCccHHHHHHHhhcccCCCCCCceEE--ecCeecc---CCCcccccccccCceEEE
Q 012749 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHL 373 (457)
Q Consensus 305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L~---d~~~L~~~~i~~~~~l~l 373 (457)
..|.|+..+|..+.-..+.++|+++|.+-|.....- ...-.|. |+.+.+. .+.+|.+.|+.+ +.+.+
T Consensus 3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~-s~~~~ 74 (77)
T cd01767 3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVN-EVVFQ 74 (77)
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCcc-ceEEE
Confidence 357889999999999999999999999999876543 2323444 7777774 589999999984 54444
No 128
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.86 E-value=0.29 Score=37.41 Aligned_cols=74 Identities=15% Similarity=0.255 Sum_probs=61.0
Q ss_pred cCceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEE--cCeecC---CCCcccccCCCCCCEEEEEEe
Q 012749 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLE---DGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~--~g~~L~---d~~tL~~~~i~~~~~i~l~~r 452 (457)
.+..+|.|+.++|+...-....++++++|-..+.. .|.+++...|+- --+.+. .+.||.+.|+.+..+|.|.-|
T Consensus 3 ~~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~r 81 (82)
T cd01773 3 GPKARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQER 81 (82)
T ss_pred CCeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEecC
Confidence 34568999999999999999999999999999999 577888888863 234453 347999999999999988654
No 129
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.84 E-value=0.12 Score=39.32 Aligned_cols=65 Identities=22% Similarity=0.300 Sum_probs=50.9
Q ss_pred ceeeEEEecCCcEEEEEeecCccHHHHHHHhhcccCCCC-CCceEE--ecCeec-cCCCcccccccccC
Q 012749 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLI--FAGKQL-EDGRTLADYNIQKE 368 (457)
Q Consensus 304 ~~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~-~~q~l~--~~g~~L-~d~~~L~~~~i~~~ 368 (457)
.-.|.|+..+|+.++..++.++||.+|.+-|....+-+. ..-.|+ |+.+.+ +++.||.+.|+.+.
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s 72 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNA 72 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCc
Confidence 346889999999999999999999999999998754322 223454 677766 55889999999853
No 130
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=94.56 E-value=0.39 Score=44.12 Aligned_cols=123 Identities=20% Similarity=0.286 Sum_probs=64.6
Q ss_pred cEEEEEeecCccHHHHHHHhhcccCCCCC-CceEE----ecCe---eccCCCcccccccccCceEEEEEEe------c--
Q 012749 315 KTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI----FAGK---QLEDGRTLADYNIQKESTLHLVLRL------R-- 378 (457)
Q Consensus 315 ~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~-~q~l~----~~g~---~L~d~~~L~~~~i~~~~~l~l~~~~------~-- 378 (457)
+.+.+.++.+.||.||.+.++.+.+++.. .++|. ++++ .++.+.++... .....+++..-+ .
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~ 111 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDE 111 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhcccc
Confidence 46889999999999999999999999776 33443 3444 46778888777 222244443211 1
Q ss_pred --CceeeEEEeC-------CCCEEEEEecCCchHHHHHHHHhhhcCCCCCCe-----EEEEcC-----eecCCCC--ccc
Q 012749 379 --GGMQIFVKTL-------TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-----RLIFAG-----KQLEDGR--TLA 437 (457)
Q Consensus 379 --~~~~i~v~~~-------~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q-----~l~~~g-----~~L~d~~--tL~ 437 (457)
..+-|.|... -|-.|.+.|.+++|..++|.+|++++|++...+ .++-++ ..++|+. .|.
T Consensus 112 ~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~keF~K~Kfaiv~~~~~~~~~yl~d~~~~il~ 191 (213)
T PF14533_consen 112 SEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDKEFEKWKFAIVQNSRYSKPRYLEDDDDLILF 191 (213)
T ss_dssp --TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HHHHTT-EEEEEETTEE---EE--TT-T----
T ss_pred cccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChhhheeEEEEEEecCCcccceeccccchhhhh
Confidence 1233544321 255788999999999999999999999986543 233333 4566654 444
Q ss_pred cc
Q 012749 438 DY 439 (457)
Q Consensus 438 ~~ 439 (457)
+-
T Consensus 192 ~~ 193 (213)
T PF14533_consen 192 DE 193 (213)
T ss_dssp GG
T ss_pred hh
Confidence 44
No 131
>COG5417 Uncharacterized small protein [Function unknown]
Probab=94.48 E-value=0.2 Score=36.78 Aligned_cols=67 Identities=18% Similarity=0.225 Sum_probs=55.2
Q ss_pred EEEEccCCceEEEEeecCccHHHHHHHHhhhcCC--CC---CCeEEEeCCcccCCCccccccccCCCCeEEE
Q 012749 231 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PP---DQQRLIFAGKQLEDGRTLADYNIQKESTLHL 297 (457)
Q Consensus 231 i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~i--p~---~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l 297 (457)
|-.+..+|.++.+.+....++..+...+.+.+.+ ++ ++.+.+-+++.|.++..|.+|+|.+|+.+.+
T Consensus 9 vD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 9 VDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 3345678999999999999999999988887764 22 2456777899999999999999999998754
No 132
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.41 E-value=0.37 Score=36.75 Aligned_cols=73 Identities=21% Similarity=0.252 Sum_probs=59.2
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEE--cCeecC---CCCcccccCCCCCCEEEEEEe
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLE---DGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~--~g~~L~---d~~tL~~~~i~~~~~i~l~~r 452 (457)
+..+|-++..+|+...-....++++++|-..|... |.+++...|.- --+.+. .+.||.+.|+.+..+|.|--|
T Consensus 3 ~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Veer 80 (80)
T cd01771 3 PISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILEER 80 (80)
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEEcC
Confidence 45678899999999999999999999999999875 77778888763 344553 346999999999999987543
No 133
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.40 E-value=0.28 Score=37.89 Aligned_cols=70 Identities=11% Similarity=0.182 Sum_probs=56.1
Q ss_pred cceeeeeeecCCceEEEeecCCchHHHHHHHHhhhhCCCCCceEEEEC--Ceecc--------cCccccccCcCcCcEEE
Q 012749 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE--------DGRTLADYNIQKESTLH 220 (457)
Q Consensus 151 ~~~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~--g~~L~--------d~~tL~~y~I~~~~~i~ 220 (457)
+.+.|.++.++|+.+.-....++||++|...|.. .+..++.+.|+.+ .+.+. .+.||.+.|+.+..++.
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~ 81 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLF 81 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEE
Confidence 3467888999999999999999999999999964 4455577888754 47775 36799999999887775
Q ss_pred E
Q 012749 221 L 221 (457)
Q Consensus 221 l 221 (457)
+
T Consensus 82 V 82 (85)
T cd01774 82 V 82 (85)
T ss_pred E
Confidence 4
No 134
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=94.33 E-value=0.29 Score=37.09 Aligned_cols=57 Identities=21% Similarity=0.344 Sum_probs=41.5
Q ss_pred EEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEE
Q 012749 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 297 (457)
Q Consensus 241 ~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l 297 (457)
+...++-...+..||..++.+.+++.+.+.+...+..|+++++|.+.|++-+.++.+
T Consensus 5 I~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQl 61 (88)
T PF11620_consen 5 IMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQL 61 (88)
T ss_dssp EEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEE
T ss_pred EEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEE
Confidence 455667778899999999999999999999999998899999999999998888866
No 135
>PRK06437 hypothetical protein; Provisional
Probab=94.30 E-value=0.38 Score=35.28 Aligned_cols=59 Identities=20% Similarity=0.372 Sum_probs=47.6
Q ss_pred CCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 389 ~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
.++...++++.+.||++|-+. .|+++....+..||+.+. .++-+++|+.|.+.--.-||
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~V~GG 67 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEVFSGG 67 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEecccCC
Confidence 345577888999999998765 488999999999999997 55567789999988777776
No 136
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.10 E-value=0.34 Score=36.99 Aligned_cols=70 Identities=16% Similarity=0.320 Sum_probs=59.3
Q ss_pred eeeEEEecCCcEEEEEeecCccHHHHHHHhhcccCCCCCCceEE--ecCeec---cCCCcccccccccCceEEEEE
Q 012749 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVL 375 (457)
Q Consensus 305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L---~d~~~L~~~~i~~~~~l~l~~ 375 (457)
-.|.|+..+|+...-.....+|+.+|-.-+.. .|.+++...|+ |+-+.+ +.+.||.+.|+.+..+|.+.-
T Consensus 6 t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~ 80 (82)
T cd01773 6 ARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 80 (82)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEec
Confidence 46889999999999999999999999999998 46777777777 777766 446899999999999988753
No 137
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=94.06 E-value=0.4 Score=44.07 Aligned_cols=103 Identities=20% Similarity=0.302 Sum_probs=57.7
Q ss_pred ceEEEeecCCchHHHHHHHHhhhhCCCCC---ceEE--EECCee---cccCccccccCcCcCcEEEEEEEec--------
Q 012749 163 KTITLEVESSDTIDNVKAKIQDKEGIPPD---QQRL--IFAGKQ---LEDGRTLADYNIQKESTLHLVLRLR-------- 226 (457)
Q Consensus 163 ~~~~~~v~~~~tV~~lK~~I~~~~gip~~---~q~L--~~~g~~---L~d~~tL~~y~I~~~~~i~l~~~~~-------- 226 (457)
+.+.+.|+.+.||++|.++++++.+++.+ ..|+ +++++. +..+.++.+. .+...+.+-.-+.
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~ 111 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDE 111 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhcccc
Confidence 45788999999999999999999998765 3454 356654 5666666664 3333333321111
Q ss_pred --CCeeEEEEc-------cCCceEEEEeecCccHHHHHHHHhhhcCCCCC
Q 012749 227 --GGMQIFVKT-------LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 267 (457)
Q Consensus 227 --~~~~i~V~~-------~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~ 267 (457)
+...|.|-- ..|-.+.+.|.++.|+.++|++|++++|+|..
T Consensus 112 ~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~k 161 (213)
T PF14533_consen 112 SEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDK 161 (213)
T ss_dssp --TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HH
T ss_pred cccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChh
Confidence 112233322 23778889999999999999999999998755
No 138
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.86 E-value=0.35 Score=36.90 Aligned_cols=70 Identities=20% Similarity=0.305 Sum_probs=57.9
Q ss_pred ceeeEEEecCCcEEEEEeecCccHHHHHHHhhcccCCCCCCceEE--ecCeec---cCCCcccccccccCceEEEE
Q 012749 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLV 374 (457)
Q Consensus 304 ~~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L---~d~~~L~~~~i~~~~~l~l~ 374 (457)
...|.++..+|..+.-....++|+++|-.-+..+ |.++..-.|+ |+-+.+ +.+.+|.+.|+.+..+|.+.
T Consensus 4 ~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 4 ISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 3468889999999999999999999999999875 6666666676 777776 44689999999998888774
No 139
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=93.78 E-value=0.25 Score=37.66 Aligned_cols=69 Identities=14% Similarity=0.366 Sum_probs=62.0
Q ss_pred eeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEE
Q 012749 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 297 (457)
Q Consensus 229 ~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l 297 (457)
++..|...+|.++-+.+....+...|-..-+.+.|=.-+..|++|+|+..+.++|-.+.+..+++.|..
T Consensus 25 inLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEa 93 (103)
T COG5227 25 INLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEA 93 (103)
T ss_pred cceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHH
Confidence 455566778999999999999999999999999999999999999999999999999999998887644
No 140
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=93.43 E-value=0.24 Score=44.08 Aligned_cols=58 Identities=19% Similarity=0.349 Sum_probs=48.9
Q ss_pred EEEEecCCchHHHHHHHHhhhcCCCCCCeEEE-EcC-----eecC-CCCcccccCCCCCCEEEEE
Q 012749 393 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 393 ~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~-~~g-----~~L~-d~~tL~~~~i~~~~~i~l~ 450 (457)
..-+.+++.||++||.+++-.+|.+++.+.|. |.| -.|. ++..|..|+..+|..||++
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihvi 79 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVI 79 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEE
Confidence 45678899999999999999999999999884 444 2565 4568999999999999876
No 141
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=92.50 E-value=0.66 Score=43.75 Aligned_cols=106 Identities=17% Similarity=0.352 Sum_probs=70.9
Q ss_pred EEeecCccHHHHHHHHhhhcCCCCCCeEEEeCC------cccCCCccccccccCCCCeEEEEEeecC------c------
Q 012749 243 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG------KQLEDGRTLADYNIQKESTLHLVLRLRG------G------ 304 (457)
Q Consensus 243 ~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g------~~L~d~~tl~~~~i~~~~tl~l~~~~~~------~------ 304 (457)
+.|..+++|+++-..|.++.|+|++...++|.- ..++...|+....+.+|+.|-+-..... .
T Consensus 89 ~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~~~~~~~~~~~~~~v~~ 168 (249)
T PF12436_consen 89 VYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRAPSEDLDKSSRYPDVKE 168 (249)
T ss_dssp EEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE--GG--GGGSSS-SHHH
T ss_pred EEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEeccccccccccCCCCHHH
Confidence 667899999999999999999999988877742 3478899999999999999855442211 0
Q ss_pred --------eeeEEEe---cCCcEEEEEeecCccHHHHHHHhhcccCCCCCCceEE
Q 012749 305 --------MQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348 (457)
Q Consensus 305 --------~~i~i~~---~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~ 348 (457)
+.|.++. ..+..+++.++...|-.+|.+.|.+++++.|..-++.
T Consensus 169 Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 169 YYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp HHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred HHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 2344433 2346899999999999999999999999999876665
No 142
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=92.46 E-value=1.3 Score=32.82 Aligned_cols=66 Identities=14% Similarity=0.234 Sum_probs=49.7
Q ss_pred eeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
|+|.+... +....++++++.||.+|-+.+ ++++....+..||..+.. +.-+++|+.|.+.-...||
T Consensus 5 m~v~vng~-~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~~V~GG 70 (70)
T PRK08364 5 IRVKVIGR-GIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE-----DDPVKDGDYVEVIPVVSGG 70 (70)
T ss_pred EEEEEecc-ccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC-----CcCcCCCCEEEEEccccCC
Confidence 55665432 225678889999999998776 677777788889999854 4557779999988777776
No 143
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=92.43 E-value=0.79 Score=34.64 Aligned_cols=68 Identities=25% Similarity=0.363 Sum_probs=50.7
Q ss_pred EEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCC-CCeEEEE----cC--eecCCCCcccccCCCCCCEEEEEEe
Q 012749 385 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF----AG--KQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 385 v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~-~~q~l~~----~g--~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
|+.++|...+++|++++|+.+|-..|++..|+.. +.+-|.+ +| .-|+.+++|.++.........+.+|
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~fr 75 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYFR 75 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEEE
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEEE
Confidence 4568899999999999999999999999999864 3446777 22 2467888999998873444444443
No 144
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=92.40 E-value=1.1 Score=42.26 Aligned_cols=107 Identities=17% Similarity=0.346 Sum_probs=73.8
Q ss_pred EEeecCccHHHHHHHhhcccCCCCCCceEEec----C--eeccCCCcccccccccCceEEEEEEecC-------------
Q 012749 319 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----G--KQLEDGRTLADYNIQKESTLHLVLRLRG------------- 379 (457)
Q Consensus 319 l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~----g--~~L~d~~~L~~~~i~~~~~l~l~~~~~~------------- 379 (457)
+-++..++|.+|-..|.++.|+|++..-++|. + ..++.+.++....+..|+.|-+......
T Consensus 89 ~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~~~~~~~~~~~~~~v~~ 168 (249)
T PF12436_consen 89 VYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRAPSEDLDKSSRYPDVKE 168 (249)
T ss_dssp EEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE--GG--GGGSSS-SHHH
T ss_pred EEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEeccccccccccCCCCHHH
Confidence 67899999999999999999999987666643 2 2479999999999999999998764321
Q ss_pred -------ceeeEEEe---CCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEE
Q 012749 380 -------GMQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 425 (457)
Q Consensus 380 -------~~~i~v~~---~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~ 425 (457)
.+.|.++. ..+..+++.++..+|-.+|-++|++..+++|+..+|+-
T Consensus 169 Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~~ 224 (249)
T PF12436_consen 169 YYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFFT 224 (249)
T ss_dssp HHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE-
T ss_pred HHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE
Confidence 14555543 23457999999999999999999999999999998863
No 145
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=92.35 E-value=0.57 Score=35.43 Aligned_cols=60 Identities=13% Similarity=0.243 Sum_probs=47.4
Q ss_pred EEEEEecCCchHHHHHHHHhhhcCC----CCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 392 TITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~~i----p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
...++++.+.||.+|.+.+....+- ......+..||+... .+.-+++|+.|.+.-+..||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~GG 80 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVSGG 80 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCCCC
Confidence 3567787889999999999987642 344567778999887 34557889999999999988
No 146
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=92.02 E-value=0.3 Score=36.81 Aligned_cols=56 Identities=23% Similarity=0.331 Sum_probs=47.0
Q ss_pred ecCCchHHHHHHHHhhhcC-CCCCCeEEEEcCeecCCCCccccc-CCCCCCEEEEEEe
Q 012749 397 VESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADY-NIQKESTLHLVLR 452 (457)
Q Consensus 397 v~~~~tV~~lK~~i~~~~~-ip~~~q~l~~~g~~L~d~~tL~~~-~i~~~~~i~l~~r 452 (457)
|+++++|.|+++.+..... -.-.+..|.++|+.|++...|++. |+++|+++.++..
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~ 58 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEE 58 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEec
Confidence 6789999999999998764 566677899999999988888877 4888999988754
No 147
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=91.46 E-value=1.1 Score=32.48 Aligned_cols=65 Identities=18% Similarity=0.399 Sum_probs=45.9
Q ss_pred eeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
|+|.+. |+.+.+ + ..|+.+|...+ ++++....+-.|+..+.. ..-++.-+++||.|.+.-..-||
T Consensus 1 m~i~~N---g~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~~-~~~~~~~L~dgD~Ieiv~~V~GG 65 (65)
T PRK06488 1 MKLFVN---GETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVHK-EARAQFVLHEGDRIEILSPMQGG 65 (65)
T ss_pred CEEEEC---CeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcCH-HHcCccccCCCCEEEEEEeccCC
Confidence 445443 655555 3 46999998765 677766677888888763 23445667889999998888887
No 148
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=91.33 E-value=0.38 Score=36.29 Aligned_cols=57 Identities=23% Similarity=0.312 Sum_probs=46.1
Q ss_pred ecCCchHHHHHHHHhhhhC-CCCCceEEEECCeecccCcccccc-CcCcCcEEEEEEEe
Q 012749 169 VESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADY-NIQKESTLHLVLRL 225 (457)
Q Consensus 169 v~~~~tV~~lK~~I~~~~g-ip~~~q~L~~~g~~L~d~~tL~~y-~I~~~~~i~l~~~~ 225 (457)
|.+.++|.+++..+..... ..-..+.|.++|..|++...+++. |+.+++++.++.++
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~p 59 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEEP 59 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEecC
Confidence 5688999999999987643 455668899999999999888887 58888888877654
No 149
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=91.23 E-value=0.73 Score=35.00 Aligned_cols=61 Identities=20% Similarity=0.328 Sum_probs=44.7
Q ss_pred EEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 012749 392 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
.....++-.+++..||..++.+.++..+.-.+......|+++++|-+-+|+-.-++.+++-
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQ 64 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQ 64 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEE
Confidence 3455678889999999999999999999999888898899999999999998888888764
No 150
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=90.85 E-value=1.1 Score=34.00 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=34.6
Q ss_pred EEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCe
Q 012749 392 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 428 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~ 428 (457)
++.+.|++..+..+|..+|.++.++|+++..|.|...
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde 48 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE 48 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence 8999999999999999999999999999999999543
No 151
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=90.60 E-value=1.4 Score=33.26 Aligned_cols=58 Identities=26% Similarity=0.358 Sum_probs=46.0
Q ss_pred EEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCC-eEEEe----CCc--ccCCCccccccccC
Q 012749 233 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF----AGK--QLEDGRTLADYNIQ 290 (457)
Q Consensus 233 V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~-q~L~~----~g~--~L~d~~tl~~~~i~ 290 (457)
|..++|...+++++++.|+++|-++|+++.||...+ .-|.+ +|. =|+.++++..+...
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~ 65 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKK 65 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBT
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCC
Confidence 456889999999999999999999999999986554 45667 121 26888899998777
No 152
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=90.34 E-value=1.2 Score=34.06 Aligned_cols=71 Identities=20% Similarity=0.286 Sum_probs=48.7
Q ss_pred eeeEEEeC------CC-CEEEEEecCCchHHHHHHHHhhhc-CCCC--CCeEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 012749 381 MQIFVKTL------TG-KTITLEVESSDTIDNVKAKIQDKE-GIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 381 ~~i~v~~~------~g-~~~~l~v~~~~tV~~lK~~i~~~~-~ip~--~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~ 450 (457)
|+|.|+.. .| ....++++...|+++|...+.... ++.. ....+..||+...++ .-+++|+.|.+.
T Consensus 2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~~-----~~l~dgDeVai~ 76 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTES-----AALKDGDELAII 76 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCCC-----cCcCCCCEEEEe
Confidence 55666542 24 457788888999999999997765 1111 122456788876533 446779999999
Q ss_pred EecCCC
Q 012749 451 LRLRGG 456 (457)
Q Consensus 451 ~rl~GG 456 (457)
-+..||
T Consensus 77 PpvsGG 82 (82)
T PLN02799 77 PPISGG 82 (82)
T ss_pred CCCCCC
Confidence 888887
No 153
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=90.31 E-value=0.39 Score=43.97 Aligned_cols=70 Identities=29% Similarity=0.369 Sum_probs=49.1
Q ss_pred eEEEEEccCC-cEEE-EEEcCCCCHHHHHHHHhhh-hCCCCCCcEEE----ecCcccCCCCcccccccccCCcceEE
Q 012749 77 MQIFVKTLTG-KTIT-LEVESSDTIDNVKAKIQDK-EGIPPDQQRLI----FAGKQLEDGRTLADYNIQKESTLHLV 146 (457)
Q Consensus 77 ~~i~vk~~~g-~~~~-l~v~~~~tV~~lK~~i~~~-~gip~~~q~L~----~~g~~L~d~~tl~~y~i~~~s~i~l~ 146 (457)
|.|++...++ -..+ ...+..+|+.++++++..+ ..+-+..+++. -+|+.|-|+.+|++|+..+++++.+.
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~vK 77 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYVK 77 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEEe
Confidence 4566655443 2333 5567788999999777664 45666554443 46999999999999999888766553
No 154
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=90.01 E-value=1.1 Score=31.49 Aligned_cols=55 Identities=20% Similarity=0.303 Sum_probs=41.6
Q ss_pred eeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012749 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
|+|++. | ..+++..+.|+.+||.++.. +.=.++++|-+..++..|. +||.|.+.-
T Consensus 1 M~I~vN---~--k~~~~~~~~tl~~lr~~~k~------~~DI~I~NGF~~~~d~~L~-----e~D~v~~Ik 55 (57)
T PF14453_consen 1 MKIKVN---E--KEIETEENTTLFELRKESKP------DADIVILNGFPTKEDIELK-----EGDEVFLIK 55 (57)
T ss_pred CEEEEC---C--EEEEcCCCcCHHHHHHhhCC------CCCEEEEcCcccCCccccC-----CCCEEEEEe
Confidence 556654 3 45888999999999999765 3338899999998876655 478887754
No 155
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=89.47 E-value=1.1 Score=34.64 Aligned_cols=43 Identities=14% Similarity=0.286 Sum_probs=37.9
Q ss_pred eEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCC---CCeEEEE
Q 012749 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLIF 425 (457)
Q Consensus 383 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~---~~q~l~~ 425 (457)
..+++.+|+++-+.+.|+..+.+|+..|.++.|+.. ....|.|
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 456788999999999999999999999999999997 4667766
No 156
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=88.74 E-value=1.2 Score=34.32 Aligned_cols=44 Identities=14% Similarity=0.280 Sum_probs=38.1
Q ss_pred EEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCC---CCeEEEeC
Q 012749 231 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLIFA 274 (457)
Q Consensus 231 i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~---~~q~L~~~ 274 (457)
+..+.+.|+++++.+.++..+.+|++.|.+++|+.. ....|.|-
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Yl 49 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYV 49 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEE
Confidence 346788999999999999999999999999999876 46777773
No 157
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=88.23 E-value=0.14 Score=48.65 Aligned_cols=58 Identities=21% Similarity=0.433 Sum_probs=0.0
Q ss_pred CchHHHHHHHHhh----------hcCCCCCCeE-----EEEcCeecCCCCcccccCCC-------CCCEEEEEEecCCCC
Q 012749 400 SDTIDNVKAKIQD----------KEGIPPDQQR-----LIFAGKQLEDGRTLADYNIQ-------KESTLHLVLRLRGGF 457 (457)
Q Consensus 400 ~~tV~~lK~~i~~----------~~~ip~~~q~-----l~~~g~~L~d~~tL~~~~i~-------~~~~i~l~~rl~GG~ 457 (457)
+.+|.++|..++. .+++|.+..+ |.|+-+++.|++||.+..-. .+.++.+.+=..||.
T Consensus 103 ttSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l~~~~~~l~~~~~~vE~gvMVlGGa 182 (309)
T PF12754_consen 103 TTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVLADSESRLLSGGKEVEFGVMVLGGA 182 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHHhcccchhccCCceEEEEEEEECCc
Confidence 6899999999999 8999999999 99999999999998887544 467777777677763
No 158
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=87.94 E-value=3 Score=30.05 Aligned_cols=57 Identities=19% Similarity=0.232 Sum_probs=40.1
Q ss_pred EEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
.+++++..|+++|...+. ++ ....+..||.....+. -.+.-+++||.|.+.-...||
T Consensus 9 ~~~~~~~~tl~~ll~~l~----~~-~~~~v~vN~~~v~~~~-~~~~~L~~gD~vei~~~v~GG 65 (65)
T PRK06944 9 TLSLPDGATVADALAAYG----AR-PPFAVAVNGDFVARTQ-HAARALAAGDRLDLVQPVAGG 65 (65)
T ss_pred EEECCCCCcHHHHHHhhC----CC-CCeEEEECCEEcCchh-cccccCCCCCEEEEEeeccCC
Confidence 466778889999988763 33 2356778888875321 223337789999999888887
No 159
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=87.59 E-value=1.5 Score=32.68 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=40.2
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeecc
Q 012749 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (457)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g 47 (457)
+.|-.+||+.-.+.|.|+.||.++=+++-++.|+.++.-.+++.|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 567789999999999999999999999999999999887776654
No 160
>smart00455 RBD Raf-like Ras-binding domain.
Probab=87.04 E-value=1.8 Score=32.08 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=39.8
Q ss_pred EEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCC
Q 012749 232 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 275 (457)
Q Consensus 232 ~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g 275 (457)
.|-.++|+...+.+.++.|+.++=+.++++.|+.++...+...|
T Consensus 3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 45678999999999999999999999999999999998888754
No 161
>smart00455 RBD Raf-like Ras-binding domain.
Probab=86.98 E-value=1.7 Score=32.15 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=39.6
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeecc
Q 012749 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (457)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g 47 (457)
..|-.++|++..+.+.|+.||.++=+++-++.|+.++.=.+++.|
T Consensus 2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 456789999999999999999999999999999988876666644
No 162
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=86.87 E-value=3 Score=30.24 Aligned_cols=58 Identities=17% Similarity=0.345 Sum_probs=43.2
Q ss_pred EEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
.++++...||.+|-.. .++++....+..||..+.... -.+.-+++|+.|.+..-.-||
T Consensus 9 ~~~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~~-~~~~~l~~gD~vei~~~vgGG 66 (66)
T PRK05659 9 PRELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRSQ-HASTALREGDVVEIVHALGGG 66 (66)
T ss_pred EEEcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHHH-cCcccCCCCCEEEEEEEecCC
Confidence 4567778899988765 588898888899998776332 223336789999998877776
No 163
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=86.85 E-value=1.7 Score=32.38 Aligned_cols=45 Identities=22% Similarity=0.307 Sum_probs=40.2
Q ss_pred EEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCc
Q 012749 232 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 276 (457)
Q Consensus 232 ~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~ 276 (457)
.|-.++|+.-.+.+.++.|+.++=+.++++.|+.+..+.+...|.
T Consensus 3 ~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~ 47 (72)
T cd01760 3 RVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGL 47 (72)
T ss_pred EEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecC
Confidence 466789999999999999999999999999999999988887653
No 164
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=86.65 E-value=2.7 Score=30.50 Aligned_cols=57 Identities=19% Similarity=0.310 Sum_probs=43.1
Q ss_pred EEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
..+++++.|+.+|-.. .++++....+.+++..+..+. .+.+ +++||.|.+....-||
T Consensus 9 ~~~~~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~-~~~~-L~~gD~ieIv~~VgGG 65 (65)
T PRK05863 9 QVEVDEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSD-WATK-LRDGARLEVVTAVQGG 65 (65)
T ss_pred EEEcCCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhH-hhhh-cCCCCEEEEEeeccCC
Confidence 3455678898887665 588999999999999876432 1235 8999999998877776
No 165
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=86.58 E-value=4.1 Score=30.83 Aligned_cols=59 Identities=17% Similarity=0.299 Sum_probs=45.4
Q ss_pred EEEEecCC-chHHHHHHHHhhhcC-C-C-CCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 393 ITLEVESS-DTIDNVKAKIQDKEG-I-P-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 393 ~~l~v~~~-~tV~~lK~~i~~~~~-i-p-~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
..++++.+ .||.+|+..+.+.+. + . .....+..||+...+ +.-+++|+.|.+.-+..||
T Consensus 18 ~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~PpvsGG 80 (80)
T TIGR01682 18 ETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVSGG 80 (80)
T ss_pred EEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCCCC
Confidence 57788877 899999999999874 1 1 133467778888775 4567789999999988888
No 166
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=86.25 E-value=4.4 Score=29.44 Aligned_cols=66 Identities=15% Similarity=0.259 Sum_probs=46.1
Q ss_pred eeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
|+|+|. |+ .+++....|+.+|...+ +.+.....+-.|+..+..+ .-++.-+++||.|.+.-..-||
T Consensus 1 m~i~vN---g~--~~~~~~~~tl~~ll~~l----~~~~~~vaVavN~~iv~r~-~w~~~~L~~gD~Ieii~~v~GG 66 (66)
T PRK08053 1 MQILFN---DQ--PMQCAAGQTVHELLEQL----NQLQPGAALAINQQIIPRE-QWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_pred CEEEEC---Ce--EEEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEeChH-HcCccccCCCCEEEEEEEccCC
Confidence 445444 53 35567788999988764 5566667888899988522 2334457889999998888887
No 167
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=86.04 E-value=3.4 Score=29.92 Aligned_cols=59 Identities=20% Similarity=0.368 Sum_probs=45.2
Q ss_pred EEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 393 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 393 ~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
..++++...||.+|...+ ++++....+..||+.+..+ .-.+.-+++||.|.+.-...||
T Consensus 7 ~~~~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~~v~GG 65 (65)
T cd00565 7 EPREVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVTAVGGG 65 (65)
T ss_pred eEEEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence 346667788999998876 4778888888999988643 1223447889999999888887
No 168
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=85.61 E-value=5.1 Score=30.86 Aligned_cols=61 Identities=11% Similarity=0.264 Sum_probs=45.4
Q ss_pred EEEEEecCCchHHHHHHHHhhhcCC-----------CCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 392 TITLEVESSDTIDNVKAKIQDKEGI-----------PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~~i-----------p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
...++++ ..||.+|.+.+.+.+.- .-....+..||+...++.. .-+++|+.|.+.-+..||
T Consensus 17 ~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsGG 88 (88)
T TIGR01687 17 SEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSGG 88 (88)
T ss_pred eEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcCC
Confidence 4567776 89999999999988631 0123566778888765432 557889999999999998
No 169
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=85.60 E-value=4.1 Score=29.38 Aligned_cols=58 Identities=19% Similarity=0.363 Sum_probs=43.9
Q ss_pred EEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
.++++.+.|+.+|...+ ++++....+..||+.+..+ .-.++-+++||.|.+.-..-||
T Consensus 7 ~~~~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~~V~GG 64 (64)
T TIGR01683 7 PVEVEDGLTLAALLESL----GLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVTFVGGG 64 (64)
T ss_pred EEEcCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence 45567788999998865 5778888888999988532 2334568889999998888887
No 170
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=85.06 E-value=0.46 Score=45.42 Aligned_cols=72 Identities=26% Similarity=0.380 Sum_probs=53.2
Q ss_pred ceEEEEEccCC--cEEEEEEcCCCCHHHHHHHHhhhhC--CCCCCcEEEecCcccCCCCcccccccc--cCCcceEEE
Q 012749 76 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQ--KESTLHLVL 147 (457)
Q Consensus 76 ~~~i~vk~~~g--~~~~l~v~~~~tV~~lK~~i~~~~g--ip~~~q~L~~~g~~L~d~~tl~~y~i~--~~s~i~l~~ 147 (457)
+..++||..+. +...|..+...||++||..++.... --+..|||+|.||.|.|...+.|.-++ +..++||+.
T Consensus 9 ~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlvc 86 (391)
T KOG4583|consen 9 PVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLVC 86 (391)
T ss_pred ceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHhc
Confidence 45677777664 4577888889999999999887653 224579999999999999999887543 334555554
No 171
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=85.00 E-value=3.5 Score=30.70 Aligned_cols=63 Identities=14% Similarity=0.249 Sum_probs=50.7
Q ss_pred EEEEEecCCchHHHHHHHHhhhcCC--CCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 392 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~~i--p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
...+.+....||.+|...+.....- ......+..||+...+ .-.+.-+++|+.|.+.-...||
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvsGG 77 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVSGG 77 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTSTS
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCCCC
Confidence 5778899999999999999888621 2367788889999988 2445556789999999888887
No 172
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=84.95 E-value=3.6 Score=31.11 Aligned_cols=45 Identities=16% Similarity=0.334 Sum_probs=38.2
Q ss_pred eeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcC
Q 012749 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 427 (457)
Q Consensus 382 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g 427 (457)
.+.++. .|.++.+.++++.|..+|+.+|+.+.+++.....|.|..
T Consensus 3 ~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 3 DVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred cEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 455555 567899999999999999999999999988888888853
No 173
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=84.81 E-value=5.4 Score=30.25 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=34.2
Q ss_pred EEEEEEcCCCCHHHHHHHHhhhhCCCCCCcEEEecCc
Q 012749 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 124 (457)
Q Consensus 88 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~ 124 (457)
++.|.|.+..+..+|.++|.++.++|++...|.|...
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde 48 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE 48 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence 8999999999999999999999999999989988753
No 174
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=84.62 E-value=4.3 Score=31.21 Aligned_cols=67 Identities=12% Similarity=0.237 Sum_probs=49.3
Q ss_pred ceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
.|+|+|. |+ ..+++.+.||.+|-.. .++++....+-.||..+.- ..-+.+-+++||.|.+..-.-||
T Consensus 18 ~m~I~VN---G~--~~~~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVpr-~~w~~t~L~egD~IEIv~~VgGG 84 (84)
T PRK06083 18 LITISIN---DQ--SIQVDISSSLAQIIAQ----LSLPELGCVFAINNQVVPR-SEWQSTVLSSGDAISLFQAIAGG 84 (84)
T ss_pred eEEEEEC---Ce--EEEcCCCCcHHHHHHH----cCCCCceEEEEECCEEeCH-HHcCcccCCCCCEEEEEEEecCC
Confidence 3555544 54 4556778899988775 4788888888899998853 24556668889999998887777
No 175
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=84.45 E-value=2.1 Score=38.23 Aligned_cols=92 Identities=17% Similarity=0.278 Sum_probs=62.1
Q ss_pred EEEEEcCCCCHHHHHHHHhhhhCCCCCCcEEE-ecC-----ccc-CCCCcccccccccCCcceEEEEeecceeeeeeecC
Q 012749 89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG-----KQL-EDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLT 161 (457)
Q Consensus 89 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~-~~g-----~~L-~d~~tl~~y~i~~~s~i~l~~~~~~~~~i~V~~~~ 161 (457)
.....+++.||.++|.|++...|.+++...|. |.| ..| +++..|..|...+|-.||++-.....+.= +.+
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~~~~~~~~---~~d 91 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDSNAQSISN---TED 91 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEecCcccccc---ccc
Confidence 34557889999999999999999999999986 554 335 45678999999999888887543222210 111
Q ss_pred CceE-EEee------cCCchHHHHHHHHh
Q 012749 162 GKTI-TLEV------ESSDTIDNVKAKIQ 183 (457)
Q Consensus 162 g~~~-~~~v------~~~~tV~~lK~~I~ 183 (457)
.... .+++ ..+++|...|++-.
T Consensus 92 ~s~veky~iSee~Y~qRtdSvr~~kk~~~ 120 (234)
T KOG3206|consen 92 ESIVEKYEISEEDYLQRTDSVRRFKKKHG 120 (234)
T ss_pred cccceeeecCHHHHhhhhHHHHHHHHHhc
Confidence 1111 1222 35778888887653
No 176
>PRK07440 hypothetical protein; Provisional
Probab=84.20 E-value=5.5 Score=29.43 Aligned_cols=67 Identities=19% Similarity=0.328 Sum_probs=49.5
Q ss_pred ceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
.|.|.+. |+ ..++....||.+|-.. .++++....+-.||..+.-+ .-++.-+++||.|.+..-.-||
T Consensus 4 ~m~i~vN---G~--~~~~~~~~tl~~lL~~----l~~~~~~vav~~N~~iv~r~-~w~~~~L~~gD~IEIv~~v~GG 70 (70)
T PRK07440 4 PITLQVN---GE--TRTCSSGTSLPDLLQQ----LGFNPRLVAVEYNGEILHRQ-FWEQTQVQPGDRLEIVTIVGGG 70 (70)
T ss_pred ceEEEEC---CE--EEEcCCCCCHHHHHHH----cCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEecCC
Confidence 4666655 54 3667788999988754 57888888889999988632 2345557889999998888777
No 177
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=83.64 E-value=2.9 Score=31.12 Aligned_cols=50 Identities=8% Similarity=0.139 Sum_probs=41.4
Q ss_pred EEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCC
Q 012749 232 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 281 (457)
Q Consensus 232 ~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~ 281 (457)
.|-.++|+..++.+.+++|+.++=+.++++.++.|..+.|-..-..++|.
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrlk~~~~e~~ 52 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRLKFLRMENH 52 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeEEEEEecCCc
Confidence 35578899999999999999999999999999999988776554444443
No 178
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=83.61 E-value=38 Score=31.58 Aligned_cols=139 Identities=16% Similarity=0.226 Sum_probs=77.1
Q ss_pred ccccCCCCeEEEEEeecCceeeEEEecCCcEEEEEe----e-cCccHHHHHHHhhcccCCCCCCceEEecCeeccCCCcc
Q 012749 286 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEV----E-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360 (457)
Q Consensus 286 ~~~i~~~~tl~l~~~~~~~~~i~i~~~~g~~~~l~v----~-~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~L 360 (457)
+|-+.+||+|.+...-.+........-.+-++++.. . .+.|+.++.+.|.+++.-.
T Consensus 1 ~Y~l~pGD~l~I~v~~~~~l~~~~~V~~dG~I~~P~iG~v~v~G~T~~e~~~~I~~~l~~~------------------- 61 (239)
T TIGR03028 1 DYRLGPGDVLRITVFQQPDLTTDTRVSESGSITFPLIGEVKLGGETPAAAERKIASRLSKG------------------- 61 (239)
T ss_pred CcEeCCCCEEEEEEecCcccceeEEECCCCeEEeeecceEEECCCCHHHHHHHHHHHHhhc-------------------
Confidence 477888888877665444433222222222333332 2 6899999999999873210
Q ss_pred cccccccCceEEEEEEecCceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCC--C-eEE--EEcCee------
Q 012749 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD--Q-QRL--IFAGKQ------ 429 (457)
Q Consensus 361 ~~~~i~~~~~l~l~~~~~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~--~-q~l--~~~g~~------ 429 (457)
.|- .+..+.+......+..++|...-.+.=.+.+.+..|+.++-.+.- |+.+. . ..+ ..+|+.
T Consensus 62 -~~~--~~p~V~V~v~~~~~~~V~V~GeV~~PG~~~l~~~~tl~~ai~~AG---G~~~~~~~~~~i~~~~~g~~~~~~id 135 (239)
T TIGR03028 62 -GFV--KQPQVTINVLQYRGQQVSVLGQVNRPGRYPLETAGRVSDVLALAG---GVTPDGADVITLVREREGKIFRKQID 135 (239)
T ss_pred -Ccc--cCCEEEEEEEeccceEEEEEEEecCCceEEcCCCCcHHHHHHHcC---CCCccCCCeEEEEEecCCeEEEEEEE
Confidence 011 112233333333466788876555555567777888888665543 34332 2 112 234553
Q ss_pred ----cCCCCcccccCCCCCCEEEE
Q 012749 430 ----LEDGRTLADYNIQKESTLHL 449 (457)
Q Consensus 430 ----L~d~~tL~~~~i~~~~~i~l 449 (457)
+.....-.++-+++||+|++
T Consensus 136 l~~l~~~g~~~~ni~L~~GD~I~V 159 (239)
T TIGR03028 136 FPALFNPGGDNENILVAGGDIIYV 159 (239)
T ss_pred HHHHHhcCCCcCCcEEcCCCEEEE
Confidence 22333445677889999876
No 179
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=83.13 E-value=9.7 Score=34.24 Aligned_cols=74 Identities=27% Similarity=0.350 Sum_probs=53.4
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCC-eEEEE--c-C---eecCCCCcccccCCC-CCCEEEEE
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF--A-G---KQLEDGRTLADYNIQ-KESTLHLV 450 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~-q~l~~--~-g---~~L~d~~tL~~~~i~-~~~~i~l~ 450 (457)
.++.+.|..++|.+..+.+++++|+.++...++.+.|++... +-|.+ . + ..++...+|.+.... ....+++.
T Consensus 2 ~~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr 81 (207)
T smart00295 2 KPRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFR 81 (207)
T ss_pred CcEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEE
Confidence 356778888899999999999999999999999999995422 23333 1 1 346667778777665 34455555
Q ss_pred Ee
Q 012749 451 LR 452 (457)
Q Consensus 451 ~r 452 (457)
.|
T Consensus 82 ~r 83 (207)
T smart00295 82 VK 83 (207)
T ss_pred EE
Confidence 54
No 180
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=82.99 E-value=10 Score=29.36 Aligned_cols=65 Identities=20% Similarity=0.240 Sum_probs=43.8
Q ss_pred CEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEE-E---cCe-ecCC-CCcccccCCCCCCEEEEEEecCCC
Q 012749 391 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F---AGK-QLED-GRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 391 ~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~-~---~g~-~L~d-~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
..++..++..+||..++..+.+.+.| ...-||- + ++. .|.+ +.|+.+.|+.+|-+|.+-.|-.=|
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~DG 84 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNEDG 84 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TTS
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccCC
Confidence 36778899999999999999999999 5556663 2 222 3544 469999999999999888775433
No 181
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=82.55 E-value=3.3 Score=31.66 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=35.1
Q ss_pred cCCceEEEEeecCccHHHHHHHHhhhcCCCC-CCeEEEeCCcc
Q 012749 236 LTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQ 277 (457)
Q Consensus 236 ~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~-~~q~L~~~g~~ 277 (457)
.+|..+.+.+.++.+..+|+++|.+++++.. ....|.|....
T Consensus 7 ~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Dde 49 (82)
T cd06407 7 YGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDD 49 (82)
T ss_pred eCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCC
Confidence 5678899999999999999999999999865 56777775544
No 182
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=82.48 E-value=0.59 Score=44.76 Aligned_cols=74 Identities=27% Similarity=0.408 Sum_probs=54.2
Q ss_pred ceeeeeeecCC--ceEEEeecCCchHHHHHHHHhhhhC-CC-CCceEEEECCeecccCccccccCcC--cCcEEEEEEEe
Q 012749 152 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEG-IP-PDQQRLIFAGKQLEDGRTLADYNIQ--KESTLHLVLRL 225 (457)
Q Consensus 152 ~~~i~V~~~~g--~~~~~~v~~~~tV~~lK~~I~~~~g-ip-~~~q~L~~~g~~L~d~~tL~~y~I~--~~~~i~l~~~~ 225 (457)
.+.+.+|.++. +...+..+...||++||..++.... =| ...|||+|.|+.|.|...+.|.-.+ ...++||+...
T Consensus 9 ~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlvcns 88 (391)
T KOG4583|consen 9 PVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLVCNS 88 (391)
T ss_pred ceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHhcCC
Confidence 35667777764 4577788889999999999987653 22 3469999999999999988886543 34556666543
No 183
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=82.31 E-value=1.6 Score=42.44 Aligned_cols=63 Identities=21% Similarity=0.312 Sum_probs=56.2
Q ss_pred CCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCC--CcccccCCCCCCEEEEEE
Q 012749 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG--RTLADYNIQKESTLHLVL 451 (457)
Q Consensus 389 ~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~--~tL~~~~i~~~~~i~l~~ 451 (457)
..+.+.+.|..+.....|+..+....|++.+..-++|++.++..+ .+|.+||+..++++.+-.
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ 75 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRC 75 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccC
Confidence 556788999999999999999999999999999999999999754 589999999999887644
No 184
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=82.04 E-value=6.4 Score=28.14 Aligned_cols=65 Identities=23% Similarity=0.470 Sum_probs=49.8
Q ss_pred CCCEEEEEecCCchHHHHHHHHhhhc---CCCCCCeEEEE-cCeecCCCCcccccCCCCCCEEEEEEec
Q 012749 389 TGKTITLEVESSDTIDNVKAKIQDKE---GIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRL 453 (457)
Q Consensus 389 ~g~~~~l~v~~~~tV~~lK~~i~~~~---~ip~~~q~l~~-~g~~L~d~~tL~~~~i~~~~~i~l~~rl 453 (457)
+|+...++..++....-..++--+.. |-|++.-.|-- .|..|+-++..+|||+.++-+++|+++-
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLKA 72 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLKA 72 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEeec
Confidence 47778888888887666666554444 56777655543 6888998999999999999999999874
No 185
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=81.86 E-value=5.4 Score=29.56 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=35.8
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeecc
Q 012749 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (457)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g 47 (457)
+.|--++|++..+.|.|+.||.++=+++-++.|+.++.=.++..|
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~ 47 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG 47 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 567789999999999999999999999999999998874454444
No 186
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=81.74 E-value=1.8 Score=45.57 Aligned_cols=182 Identities=18% Similarity=0.187 Sum_probs=103.3
Q ss_pred eEEEeecCCchHHHHHHHHhhhhCCCCCceEEEE----CCeec--ccCccccccCcCcCcEEEEEE--Eec-CCeeEEEE
Q 012749 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF----AGKQL--EDGRTLADYNIQKESTLHLVL--RLR-GGMQIFVK 234 (457)
Q Consensus 164 ~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~----~g~~L--~d~~tL~~y~I~~~~~i~l~~--~~~-~~~~i~V~ 234 (457)
.+.+.|+...+++.+|+.|++..++|.+...+.. +|..+ .++.||.. ..++++|.+-+ .+. +...+.|.
T Consensus 878 ~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~--~~~~~~iTI~LG~~Lk~dE~~~KI~ 955 (1203)
T KOG4598|consen 878 FHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSG--AFQSCFITIKLGAPLKSDEKMMKII 955 (1203)
T ss_pred heeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhh--hcccceEEEEecCcCCCCceeeEEE
Confidence 4678899999999999999999999999988762 23333 45667765 44555554433 221 22222222
Q ss_pred cc---CCc------eEEEEeecCccHHHHHHHHhhhcC--------CCCCCeEEEeCCcccCCCccccccccCCCCeEEE
Q 012749 235 TL---TGK------TITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 297 (457)
Q Consensus 235 ~~---~g~------~~~~~v~~~~tV~~lK~~I~~~~~--------ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l 297 (457)
.+ ..+ -+...+..+.|+++.|..+-.++. +.....|+..+++. ..++.+.++++-.++.=+.
T Consensus 956 ~L~~l~NE~e~~k~l~e~V~~~~tT~~Q~K~ELi~~L~~i~~~~ltLS~~r~R~~~K~g~-~Pg~~~lD~~~~~eD~~~~ 1034 (1203)
T KOG4598|consen 956 LLDILENERENWKPLFELVVSQSTTIGQVKLELLRMLKEVYGEELTLSMVRLRELGKSGV-GPGRAVLDPNDTLEDRSYN 1034 (1203)
T ss_pred eehhhhccccCCcchhhhhhcCcccHHHHHHHHHHHHHHHhhcccchhHHHHHHHccCCc-CCceEecCcchhhhhhhhh
Confidence 21 111 234567899999999887665443 34444444444332 2333444433332221100
Q ss_pred E---------------EeecCceeeEEEecCCcE-----EEEEeecCccHHHHHHHhhcccCCCCCCceEE
Q 012749 298 V---------------LRLRGGMQIFVKTLTGKT-----ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348 (457)
Q Consensus 298 ~---------------~~~~~~~~i~i~~~~g~~-----~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~ 348 (457)
. -+.-...+|+++-|.--+ |.=.+-+...+.++++.+.+-.|||.++-.++
T Consensus 1035 ~~~~~~~qE~~deV~~~k~~~sL~i~vRRW~Ps~~e~~pFQEV~Ld~~~~~E~Re~LS~ISgIPiD~l~~~ 1105 (1203)
T KOG4598|consen 1035 WCSHLYLQEITDEVMIGKPGESLPIMVRRWRPSTVEVNPFQEVLLDANAEVEFREALSKISGIPVDRLAIT 1105 (1203)
T ss_pred hHHHHHHHHHHhhcccCCCCccchhhheeccccceecCCceeEEecCcchHHHHHHHHHhcCCchhhhhhh
Confidence 0 011122355665554221 22122346678999999999999999965543
No 187
>PRK06437 hypothetical protein; Provisional
Probab=79.64 E-value=13 Score=27.11 Aligned_cols=54 Identities=19% Similarity=0.327 Sum_probs=42.4
Q ss_pred CCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEEE
Q 012749 237 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 299 (457)
Q Consensus 237 ~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~ 299 (457)
.++.-.++++++.||.+|=+. +|+++.......+|+... .++-+++|+.+.++.
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILE 62 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEe
Confidence 556677788888899988544 588888888888999886 666788999987764
No 188
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.96 E-value=2.9 Score=40.07 Aligned_cols=58 Identities=12% Similarity=0.191 Sum_probs=48.0
Q ss_pred EEEEecCCchHHHHHHHHhhhcCCCCCCeEEEE---cCee-----cCCCCcccccCCCCCCEEEEE
Q 012749 393 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQ-----LEDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 393 ~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~---~g~~-----L~d~~tL~~~~i~~~~~i~l~ 450 (457)
....+.-.-||.|+|..+..+.|+.+..++|++ +|+. ...+..|-.|+|++|+.+.+.
T Consensus 350 ~s~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 350 ASGLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred cceEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 345566778999999999999999999999998 5654 345678999999999988764
No 189
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=78.91 E-value=8.6 Score=29.77 Aligned_cols=64 Identities=19% Similarity=0.212 Sum_probs=43.1
Q ss_pred cEEEEEEcCCCCHHHHHHHHhhhhCCCCCCcEEEec----C-ccc-CCCCcccccccccCCcceEEEEeec
Q 012749 87 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----G-KQL-EDGRTLADYNIQKESTLHLVLRLRG 151 (457)
Q Consensus 87 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~----g-~~L-~d~~tl~~y~i~~~s~i~l~~~~~~ 151 (457)
..++...+..|||..++..+.+...| ...-||.-. + ..| +.+.|+.+.++.+|-+|.+..+..+
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~D 83 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNED 83 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TT
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccC
Confidence 35677789999999999999999999 556777632 2 235 4557999999999988777666543
No 190
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=78.90 E-value=8.6 Score=29.10 Aligned_cols=46 Identities=17% Similarity=0.304 Sum_probs=36.8
Q ss_pred eeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEc
Q 012749 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 426 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~ 426 (457)
+.+.+....+....+.++++.+..+|+.+|++..+.+.....+.|.
T Consensus 2 ~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~ 47 (84)
T PF00564_consen 2 VRVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYK 47 (84)
T ss_dssp EEEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEE
T ss_pred EEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEee
Confidence 3455665544333489999999999999999999999888899884
No 191
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=78.42 E-value=8.3 Score=28.55 Aligned_cols=53 Identities=21% Similarity=0.258 Sum_probs=39.1
Q ss_pred eEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEE--cCeecCCCCc
Q 012749 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRT 435 (457)
Q Consensus 383 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~--~g~~L~d~~t 435 (457)
+.|.-++|+...+.+.|+.||.|.-.++.++.|+.++.-.++. ..++|..+..
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~d 57 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQD 57 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTSB
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCCc
Confidence 3455678999999999999999999999999999999877664 4456654443
No 192
>KOG4261 consensus Talin [Cytoskeleton]
Probab=77.50 E-value=3.6 Score=43.97 Aligned_cols=100 Identities=26% Similarity=0.340 Sum_probs=77.6
Q ss_pred EEEEeecCccHHHHHHHHhhhcC---CCCCCeEEEe------CCcccCCCccccccccCCCCeEEEEEeecCceeeEEEe
Q 012749 241 ITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKT 311 (457)
Q Consensus 241 ~~~~v~~~~tV~~lK~~I~~~~~---ip~~~q~L~~------~g~~L~d~~tl~~~~i~~~~tl~l~~~~~~~~~i~i~~ 311 (457)
-++..+|+.+|-+--+.|.+++. .-+..+-|.. +|--|+.++++.+|.+.+++++..-.+. -..-|++
T Consensus 15 ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~k~---r~lkvrm 91 (1003)
T KOG4261|consen 15 KTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKRKQ---RPLKVRM 91 (1003)
T ss_pred eeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchhhhc---ccceeee
Confidence 34666799999888777877764 1244455443 2444899999999999999998664332 2577899
Q ss_pred cCCcEEEEEeecCccHHHHHHHhhcccCCCCC
Q 012749 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 343 (457)
Q Consensus 312 ~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~ 343 (457)
++|..-++.+..+.+|.+|.-.|..+.||--.
T Consensus 92 ldg~vkti~vd~sq~v~~L~~~ic~~igItny 123 (1003)
T KOG4261|consen 92 LDGAVKTIMVDDSQPVSQLMMTICNKIGITNY 123 (1003)
T ss_pred cccccceeeecccccHHHHHHHHHhccCccch
Confidence 99999999999999999999999998887654
No 193
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=77.08 E-value=13 Score=27.15 Aligned_cols=61 Identities=18% Similarity=0.234 Sum_probs=43.8
Q ss_pred CCCEEEEEecCC-chHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 389 TGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 389 ~g~~~~l~v~~~-~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
+|+.+ +++.. .||.+|-.. .++++....+-.||..+..+ .-+.+-+++||.|.+..-.-||
T Consensus 6 NG~~~--~~~~~~~tv~~lL~~----l~~~~~~vav~vN~~iv~r~-~w~~~~L~~gD~iEIv~~VgGG 67 (67)
T PRK07696 6 NGNQI--EVPESVKTVAELLTH----LELDNKIVVVERNKDILQKD-DHTDTSVFDGDQIEIVTFVGGG 67 (67)
T ss_pred CCEEE--EcCCCcccHHHHHHH----cCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEecCC
Confidence 35444 55555 688887654 57888888888999988643 2344557889999998877776
No 194
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=75.49 E-value=17 Score=32.54 Aligned_cols=63 Identities=29% Similarity=0.381 Sum_probs=45.7
Q ss_pred CeeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCC-eEEEeCC------cccCCCccccccccC
Q 012749 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAG------KQLEDGRTLADYNIQ 290 (457)
Q Consensus 228 ~~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~-q~L~~~g------~~L~d~~tl~~~~i~ 290 (457)
.+.+.|..++|.+..+.++++.|++++-..++.+.||+..+ ..|.+.. .-++..+++.+....
T Consensus 3 ~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~ 72 (207)
T smart00295 3 PRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVK 72 (207)
T ss_pred cEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCC
Confidence 35667888999999999999999999999999999996543 3344321 124455666665544
No 195
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=75.42 E-value=6.4 Score=27.76 Aligned_cols=46 Identities=22% Similarity=0.309 Sum_probs=34.4
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccc
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 57 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~ 57 (457)
|+|+| ||+. ++++.+.|+.++|+++..... -++++|....++..|.
T Consensus 1 M~I~v---N~k~--~~~~~~~tl~~lr~~~k~~~D------I~I~NGF~~~~d~~L~ 46 (57)
T PF14453_consen 1 MKIKV---NEKE--IETEENTTLFELRKESKPDAD------IVILNGFPTKEDIELK 46 (57)
T ss_pred CEEEE---CCEE--EEcCCCcCHHHHHHhhCCCCC------EEEEcCcccCCccccC
Confidence 77777 5544 568888999999999877332 5789999987765554
No 196
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=75.40 E-value=11 Score=26.98 Aligned_cols=65 Identities=23% Similarity=0.478 Sum_probs=51.1
Q ss_pred cCCcEEEEEeecCccHHHHHHHhhcc---cCCCCCCceEE-ecCeeccCCCcccccccccCceEEEEEE
Q 012749 312 LTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLR 376 (457)
Q Consensus 312 ~~g~~~~l~v~~~~Tv~~lK~~I~~~---~~ip~~~q~l~-~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 376 (457)
.+|+...++.++++...-..++-.+. .|-|+++=.|. -.|..|+-++...+||+.++-+|.|..+
T Consensus 3 VNGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLK 71 (76)
T PF10790_consen 3 VNGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLK 71 (76)
T ss_pred eCCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEee
Confidence 46788888888888877776665544 44777765555 5788999999999999999999998765
No 197
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=75.06 E-value=11 Score=28.86 Aligned_cols=70 Identities=14% Similarity=0.217 Sum_probs=47.8
Q ss_pred eeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCC-CCeEEEEcCee-----cCCCCcccc----cCCCCCCEEEEEE
Q 012749 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQ-----LEDGRTLAD----YNIQKESTLHLVL 451 (457)
Q Consensus 382 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~-~~q~l~~~g~~-----L~d~~tL~~----~~i~~~~~i~l~~ 451 (457)
.|.+.. .|..+.+.++++.+..+|+..|+++.++.. ..+.|.|-.-. |..+.-|.+ |.....++|.+.+
T Consensus 2 ~vK~~~-~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai~i~~~~~~~~v~l~v 80 (82)
T cd06407 2 RVKATY-GEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEECIDVYRSSGSHTIRLLV 80 (82)
T ss_pred EEEEEe-CCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHHHHHHHHCCCCeEEEEe
Confidence 344443 466899999999999999999999999976 67788773322 222222333 5555666776665
Q ss_pred e
Q 012749 452 R 452 (457)
Q Consensus 452 r 452 (457)
+
T Consensus 81 ~ 81 (82)
T cd06407 81 H 81 (82)
T ss_pred e
Confidence 4
No 198
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=74.96 E-value=12 Score=28.06 Aligned_cols=59 Identities=12% Similarity=0.210 Sum_probs=42.2
Q ss_pred eEEEeecCCchHHHHHHHHhhhhCC----CCCceEEEECCeecccCccccccCcCcCcEEEEEEEecC
Q 012749 164 TITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (457)
Q Consensus 164 ~~~~~v~~~~tV~~lK~~I~~~~gi----p~~~q~L~~~g~~L~d~~tL~~y~I~~~~~i~l~~~~~~ 227 (457)
...++++...||.+|.+.+...++- ......+..+|+... .++-+.+|+.|.++....+
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~G 79 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVSG 79 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCCC
Confidence 4567777789999999999887542 233456667787776 4567889999988754443
No 199
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=74.94 E-value=6.9 Score=38.60 Aligned_cols=68 Identities=19% Similarity=0.291 Sum_probs=54.3
Q ss_pred cCceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcC-CCCCCeEEE--EcCeecCCC-CcccccCCCCCC
Q 012749 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDG-RTLADYNIQKES 445 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~-ip~~~q~l~--~~g~~L~d~-~tL~~~~i~~~~ 445 (457)
.++..|-|+..+|+.....++.+.||.+++..|+..-. -+...|.|. |-.++|.|+ .||++.|+.+-.
T Consensus 303 ~PtTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsv 374 (380)
T KOG2086|consen 303 EPTTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSV 374 (380)
T ss_pred CCcceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhh
Confidence 35677999999999999999999999999999998753 344466665 568899764 599999987644
No 200
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=73.94 E-value=7.8 Score=29.84 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=35.4
Q ss_pred eEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCC
Q 012749 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 268 (457)
Q Consensus 230 ~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~ 268 (457)
.+.|..++|.++.+.+..+++.+++=+.++.+.|+|.+.
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~ 41 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYT 41 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHH
Confidence 456777889999999999999999999999999999884
No 201
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=73.45 E-value=29 Score=25.46 Aligned_cols=59 Identities=19% Similarity=0.362 Sum_probs=46.1
Q ss_pred EEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 393 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 393 ~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
-.++++...|+++|-.. .+++++......||..+..+ --++.-+++|+-|.+.--.-||
T Consensus 10 ~~~e~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVpr~-~~~~~~l~~gD~ievv~~v~GG 68 (68)
T COG2104 10 KEVEIAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVPRS-QWADTILKEGDRIEVVRVVGGG 68 (68)
T ss_pred EEEEcCCCCcHHHHHHH----hCCCCceEEEEECCEEccch-hhhhccccCCCEEEEEEeecCC
Confidence 45777888999998765 68889888999999998643 2345567788999988777776
No 202
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=72.18 E-value=14 Score=28.50 Aligned_cols=40 Identities=15% Similarity=0.243 Sum_probs=32.0
Q ss_pred cCCcEEEEEeecCccHHHHHHHhhcccCCCCCCceEEecCe
Q 012749 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 352 (457)
Q Consensus 312 ~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~ 352 (457)
.+|.++.+.++++.+..+|..+|.+++++. ..-.+.|...
T Consensus 9 ~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE 48 (86)
T cd06408 9 AQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD 48 (86)
T ss_pred ecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC
Confidence 478999999999999999999999999985 2233446444
No 203
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=72.08 E-value=85 Score=29.23 Aligned_cols=213 Identities=16% Similarity=0.185 Sum_probs=113.1
Q ss_pred ccCcCcCcEEEEEEEecCCeeEEEEccCCceEEE----Eee-cCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccc
Q 012749 210 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL----EVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 284 (457)
Q Consensus 210 ~y~I~~~~~i~l~~~~~~~~~i~V~~~~g~~~~~----~v~-~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl 284 (457)
+|-|..|++|.+.+--.......+......++.+ .+. .+.|++++++.|..++.- +
T Consensus 1 ~Y~l~pGD~l~I~v~~~~~l~~~~~V~~dG~I~~P~iG~v~v~G~T~~e~~~~I~~~l~~----------------~--- 61 (239)
T TIGR03028 1 DYRLGPGDVLRITVFQQPDLTTDTRVSESGSITFPLIGEVKLGGETPAAAERKIASRLSK----------------G--- 61 (239)
T ss_pred CcEeCCCCEEEEEEecCcccceeEEECCCCeEEeeecceEEECCCCHHHHHHHHHHHHhh----------------c---
Confidence 4778888888877654333332233333233332 233 677999999999876521 0
Q ss_pred cccccCCCCeEEEEEeecCceeeEEEecCCcEEEEEeecCccHHHHHHHhhcccCCCCCCce---EE--ecCee------
Q 012749 285 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---LI--FAGKQ------ 353 (457)
Q Consensus 285 ~~~~i~~~~tl~l~~~~~~~~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~---l~--~~g~~------ 353 (457)
.| -....+.+......+..++|-..=.+.-...+....|+.++-.. -=|+.+.... +. .+|+.
T Consensus 62 -~~--~~~p~V~V~v~~~~~~~V~V~GeV~~PG~~~l~~~~tl~~ai~~---AGG~~~~~~~~~~i~~~~~g~~~~~~id 135 (239)
T TIGR03028 62 -GF--VKQPQVTINVLQYRGQQVSVLGQVNRPGRYPLETAGRVSDVLAL---AGGVTPDGADVITLVREREGKIFRKQID 135 (239)
T ss_pred -Cc--ccCCEEEEEEEeccceEEEEEEEecCCceEEcCCCCcHHHHHHH---cCCCCccCCCeEEEEEecCCeEEEEEEE
Confidence 00 01112223233334456777655445555677777888876433 2233332111 11 23332
Q ss_pred ----ccCCCcccccccccCceEEEEEEecCceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCC-CCCeEEEE---
Q 012749 354 ----LEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIF--- 425 (457)
Q Consensus 354 ----L~d~~~L~~~~i~~~~~l~l~~~~~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip-~~~q~l~~--- 425 (457)
+.....-.++-+.+++.+++... -.++|-..-++.-.+.+.+++|+.++-.+......-. +....++.
T Consensus 136 l~~l~~~g~~~~ni~L~~GD~I~V~~~----~~v~v~G~V~~pg~~~~~~~~tl~~al~~aGG~~~~a~~~~v~i~R~~~ 211 (239)
T TIGR03028 136 FPALFNPGGDNENILVAGGDIIYVDRA----PVFYIYGEVQRPGAYRLERNMTVMQALAQGGGLTPRGTERGIRVMRRDD 211 (239)
T ss_pred HHHHHhcCCCcCCcEEcCCCEEEEcCC----ccEEEEeEccCCeEEEeCCCCCHHHHHHhcCCCCcccCcceEEEEEECC
Confidence 22233334667888888888632 2467765555666777788999988766665544321 22233332
Q ss_pred cCeecCCCCcccccCCCCCCEEEEEEe
Q 012749 426 AGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 426 ~g~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
+|+.-.-...+.+ .+++||.|++--+
T Consensus 212 ~g~~~~~~~~~~~-~l~~gDii~V~~s 237 (239)
T TIGR03028 212 KGAVEEVSGELGD-LVQPDDVIYVRES 237 (239)
T ss_pred CCcEEEEecCCCc-ccCCCCEEEEeCc
Confidence 3332111111222 3899999988543
No 204
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=70.93 E-value=22 Score=26.69 Aligned_cols=45 Identities=16% Similarity=0.334 Sum_probs=36.0
Q ss_pred EEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCcEEEecC
Q 012749 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 123 (457)
Q Consensus 78 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g 123 (457)
.+.++. +|....+.+++..|-.+|+.+|..+.+.+.....|.|..
T Consensus 3 ~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 3 DVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred cEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 344443 677889999999999999999999999877666776664
No 205
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=70.92 E-value=18 Score=37.40 Aligned_cols=71 Identities=14% Similarity=0.186 Sum_probs=54.6
Q ss_pred eeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCC----CCCCeEEEE---cCeecCCCCcccccCCCCCCEEEEEEec
Q 012749 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLVLRL 453 (457)
Q Consensus 382 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~i----p~~~q~l~~---~g~~L~d~~tL~~~~i~~~~~i~l~~rl 453 (457)
++.|...+ +...+-++.+..|.||-..+-+..+= +..+..|.. +|.+|+.+.||++.||.||+++++.-+-
T Consensus 4 RVtV~~~~-~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~~ 81 (452)
T TIGR02958 4 RVTVLAGR-RAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPAS 81 (452)
T ss_pred EEEEeeCC-eeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeCC
Confidence 46666554 34777888899999999988887754 222334443 7899999999999999999999998653
No 206
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=70.20 E-value=12 Score=27.74 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=38.0
Q ss_pred EEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccE
Q 012749 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48 (457)
Q Consensus 5 ~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~ 48 (457)
|..+||++..+.+.|+.||.++=.|.-++.|++++.=.++.-|.
T Consensus 4 V~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~ 47 (73)
T cd01817 4 VILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGG 47 (73)
T ss_pred EECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecC
Confidence 45689999999999999999999999999999988766666553
No 207
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=70.00 E-value=8.5 Score=28.99 Aligned_cols=35 Identities=11% Similarity=0.252 Sum_probs=32.8
Q ss_pred EEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEc
Q 012749 392 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 426 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~ 426 (457)
++.+.+++..+..+|..+|+++...+++.-.|.|.
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~ 42 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYR 42 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEec
Confidence 57789999999999999999999999999999994
No 208
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=68.92 E-value=16 Score=28.31 Aligned_cols=56 Identities=16% Similarity=0.294 Sum_probs=30.0
Q ss_pred EEecC-CchHHHHHHHHhh-hcCCCCCCe----EEEEcCee----cCCCCcccccCCCCCCEEEEE
Q 012749 395 LEVES-SDTIDNVKAKIQD-KEGIPPDQQ----RLIFAGKQ----LEDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 395 l~v~~-~~tV~~lK~~i~~-~~~ip~~~q----~l~~~g~~----L~d~~tL~~~~i~~~~~i~l~ 450 (457)
+.++. .+|+.+|-.+|-. +.|+..-.. .++|..-. -..+++|+++||.+|+.+.+.
T Consensus 2 v~~d~~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~ 67 (87)
T PF14732_consen 2 VKVDTKKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVD 67 (87)
T ss_dssp EEE-TTT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEE
T ss_pred EEEechhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEE
Confidence 44553 4599999998754 666655322 33333222 223478999999999988763
No 209
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=68.10 E-value=6.4 Score=38.40 Aligned_cols=67 Identities=19% Similarity=0.296 Sum_probs=57.4
Q ss_pred CCceEEEeecCCchHHHHHHHHhhhhCCCCCceEEEECCeecccC--ccccccCcCcCcEEEEEEEecC
Q 012749 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG--RTLADYNIQKESTLHLVLRLRG 227 (457)
Q Consensus 161 ~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~--~tL~~y~I~~~~~i~l~~~~~~ 227 (457)
..+.+++.|...-....++..++...|++.+.--++|+++.+.++ .++..||+..++++.+-.+.+.
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks~d 79 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKSSD 79 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCCCC
Confidence 556778888888889999999999999999999999999999765 6899999999999977665443
No 210
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=67.17 E-value=13 Score=28.72 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=34.9
Q ss_pred eEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCcc
Q 012749 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40 (457)
Q Consensus 2 ~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~ 40 (457)
++=|--++|.++++++..+|+.+.+=+.+.++.|+|.+-
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~ 41 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYT 41 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHH
Confidence 345666899999999999999999999999999999875
No 211
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=66.62 E-value=33 Score=26.50 Aligned_cols=46 Identities=15% Similarity=0.281 Sum_probs=36.3
Q ss_pred eeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCe
Q 012749 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 428 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~ 428 (457)
++|.+.. .|.++.+.|+++.+..+|..+|.++.++. ....+-|...
T Consensus 3 ikVKv~~-~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE 48 (86)
T cd06408 3 IRVKVHA-QDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD 48 (86)
T ss_pred EEEEEEe-cCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC
Confidence 4555654 46689999999999999999999999996 5666666433
No 212
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=65.36 E-value=7 Score=32.21 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=37.6
Q ss_pred CEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccc
Q 012749 391 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438 (457)
Q Consensus 391 ~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~ 438 (457)
+..-+-|+.+.||+++...|..+.++++++.-|+.++..+..+.++++
T Consensus 41 K~KfllVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~ 88 (121)
T PTZ00380 41 KVHFLALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGD 88 (121)
T ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHH
Confidence 444446999999999999999999999999656667766666666654
No 213
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=65.24 E-value=12 Score=39.99 Aligned_cols=44 Identities=23% Similarity=0.448 Sum_probs=39.8
Q ss_pred cCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEc
Q 012749 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 50 (457)
Q Consensus 7 ~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L 50 (457)
..++..+.+-+.++.|+..+.+.|.+..|+|...|.|+|.|...
T Consensus 321 ~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 321 MVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLS 364 (732)
T ss_pred eccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCcc
Confidence 45678899999999999999999999999999999999987654
No 214
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=64.78 E-value=38 Score=25.57 Aligned_cols=58 Identities=12% Similarity=0.220 Sum_probs=38.2
Q ss_pred EEEecC-CchHHHHHHHHhhhcC-----CCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 394 TLEVES-SDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 394 ~l~v~~-~~tV~~lK~~i~~~~~-----ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
.+++++ ..||.+|+..+.++.. ......+..-|++...+ +.-+++||.|.+.-+..||
T Consensus 18 ~~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~-----~~~l~dgDeVai~PPVsGG 81 (81)
T PRK11130 18 ALELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_pred eEEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCC-----CCCCCCCCEEEEeCCCCCC
Confidence 345543 4799999999998862 11223344445544332 3347889999999888887
No 215
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=63.95 E-value=22 Score=26.48 Aligned_cols=45 Identities=22% Similarity=0.350 Sum_probs=38.9
Q ss_pred eCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcC--eecC
Q 012749 387 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLE 431 (457)
Q Consensus 387 ~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g--~~L~ 431 (457)
-++|+...+.+.|+.||.|+-.++.++-|++++.--++.-| ++|.
T Consensus 6 LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~~k~l~ 52 (73)
T cd01817 6 LPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGGDKPLV 52 (73)
T ss_pred CCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecCCcccc
Confidence 46788899999999999999999999999999988877655 4565
No 216
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=63.66 E-value=26 Score=26.20 Aligned_cols=42 Identities=7% Similarity=0.158 Sum_probs=36.3
Q ss_pred EEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEE
Q 012749 384 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 425 (457)
Q Consensus 384 ~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~ 425 (457)
.|...+|+...+.+.|++|+.|+-+..+.+.++.|..--|-.
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrl 44 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRL 44 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeEE
Confidence 355678999999999999999999999999999998875543
No 217
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=63.60 E-value=14 Score=36.46 Aligned_cols=66 Identities=17% Similarity=0.285 Sum_probs=51.6
Q ss_pred eeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeC---Cccc-CCCccccccccCCCCe
Q 012749 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQL-EDGRTLADYNIQKEST 294 (457)
Q Consensus 229 ~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~---g~~L-~d~~tl~~~~i~~~~t 294 (457)
-.|.|+..+|..+...++-++||.+|+.-|+..-.-.+..+++++. -+.| ++++||.+-|+.+...
T Consensus 306 TsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvl 375 (380)
T KOG2086|consen 306 TSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVL 375 (380)
T ss_pred ceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhh
Confidence 4577889999999999999999999999999887765554444433 3455 6789999999987544
No 218
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=63.40 E-value=25 Score=26.26 Aligned_cols=43 Identities=23% Similarity=0.313 Sum_probs=34.5
Q ss_pred eEEEeCCCCEEEEEec-CCchHHHHHHHHhhhcCCCCCCeEEEEc
Q 012749 383 IFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFA 426 (457)
Q Consensus 383 i~v~~~~g~~~~l~v~-~~~tV~~lK~~i~~~~~ip~~~q~l~~~ 426 (457)
|.++.. |..+.+.++ .+.|..+|+.+|+++.+.+.....+.|.
T Consensus 3 vK~~~~-~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~ 46 (81)
T cd05992 3 VKVKYG-GEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYP 46 (81)
T ss_pred EEEEec-CCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEee
Confidence 444443 557888888 8999999999999999998767777774
No 219
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=62.84 E-value=2.4 Score=40.54 Aligned_cols=61 Identities=20% Similarity=0.487 Sum_probs=0.0
Q ss_pred ceEEEEEccCCcEEEEEEc---C--CCCHHHHHHHHhh----------hhCCCCCCcE-----EEecCcccCCCCccccc
Q 012749 76 GMQIFVKTLTGKTITLEVE---S--SDTIDNVKAKIQD----------KEGIPPDQQR-----LIFAGKQLEDGRTLADY 135 (457)
Q Consensus 76 ~~~i~vk~~~g~~~~l~v~---~--~~tV~~lK~~i~~----------~~gip~~~q~-----L~~~g~~L~d~~tl~~y 135 (457)
.+.|.+|......+.|.+. + +.+|.++|..++. ..++|.+..+ |.|+-+.+.|.++|.+.
T Consensus 78 sItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~ 157 (309)
T PF12754_consen 78 SITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEV 157 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHH
Confidence 4666666665554444433 2 5789999999999 8899998888 99999999999999987
Q ss_pred c
Q 012749 136 N 136 (457)
Q Consensus 136 ~ 136 (457)
.
T Consensus 158 l 158 (309)
T PF12754_consen 158 L 158 (309)
T ss_dssp -
T ss_pred H
Confidence 5
No 220
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=62.77 E-value=25 Score=27.83 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=34.4
Q ss_pred EEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEE
Q 012749 385 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 425 (457)
Q Consensus 385 v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~ 425 (457)
+++..|.+..+.|+.+.+..+|+.++++..+++.. ..+-|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 35567889999999999999999999999999986 55555
No 221
>KOG4261 consensus Talin [Cytoskeleton]
Probab=62.72 E-value=20 Score=38.66 Aligned_cols=102 Identities=26% Similarity=0.331 Sum_probs=77.6
Q ss_pred CcEEEEEeecCccHHHHHHHhhcccCCC---CCCceEE------ecCeeccCCCcccccccccCceEEEEEEecCceeeE
Q 012749 314 GKTITLEVESSDTIDNVKAKIQDKEGIP---PDQQRLI------FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 384 (457)
Q Consensus 314 g~~~~l~v~~~~Tv~~lK~~I~~~~~ip---~~~q~l~------~~g~~L~d~~~L~~~~i~~~~~l~l~~~~~~~~~i~ 384 (457)
+-+-++-+.|+++|.|--+.|++++.-. +....|+ .+|--|+++++|.+|-+.+++++.-..+.+ ...
T Consensus 12 ~v~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~k~r---~lk 88 (1003)
T KOG4261|consen 12 NVVKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKRKQR---PLK 88 (1003)
T ss_pred ceeeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchhhhcc---cce
Confidence 4455789999999999999999875421 2222233 234457889999999888888877654322 356
Q ss_pred EEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCC
Q 012749 385 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 418 (457)
Q Consensus 385 v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~ 418 (457)
++.++|..-++.|+...+|.+|..-|+.+.||.-
T Consensus 89 vrmldg~vkti~vd~sq~v~~L~~~ic~~igItn 122 (1003)
T KOG4261|consen 89 VRMLDGAVKTIMVDDSQPVSQLMMTICNKIGITN 122 (1003)
T ss_pred eeecccccceeeecccccHHHHHHHHHhccCccc
Confidence 7778898999999999999999999999998854
No 222
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=62.67 E-value=12 Score=39.14 Aligned_cols=63 Identities=37% Similarity=0.537 Sum_probs=42.7
Q ss_pred CEEEEEecCCchHHHHHHHHhhhc--CCC------CCCeEEEE--c--Ce-ecCCC-------------CcccccCCCCC
Q 012749 391 KTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF--A--GK-QLEDG-------------RTLADYNIQKE 444 (457)
Q Consensus 391 ~~~~l~v~~~~tV~~lK~~i~~~~--~ip------~~~q~l~~--~--g~-~L~d~-------------~tL~~~~i~~~ 444 (457)
..+.++|-..+||.++|++|-+.. +.| +++.-|-+ + |+ .|.|. .||+.|+|.+|
T Consensus 202 ~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 281 (539)
T PF08337_consen 202 EEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPDG 281 (539)
T ss_dssp TCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--TT
T ss_pred ceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCCC
Confidence 457888889999999999997764 333 33444433 2 33 45543 58999999999
Q ss_pred CEEEEEEec
Q 012749 445 STLHLVLRL 453 (457)
Q Consensus 445 ~~i~l~~rl 453 (457)
+++.++.+.
T Consensus 282 a~vaLv~k~ 290 (539)
T PF08337_consen 282 ATVALVPKQ 290 (539)
T ss_dssp EEEEEEES-
T ss_pred ceEEEeecc
Confidence 999998875
No 223
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=62.35 E-value=22 Score=28.57 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=29.5
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCC
Q 012749 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38 (457)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~ 38 (457)
|+|-..+|.+-++.|...-+-.+||+++-+|.|++.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 688889999999999999999999999999999987
No 224
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=61.46 E-value=26 Score=34.18 Aligned_cols=59 Identities=17% Similarity=0.213 Sum_probs=46.3
Q ss_pred EEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012749 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 457 (457)
.+++..+.||.+|-.. .+++++...+..||+.+..+ .-.++-+++||.|.+..-.-||.
T Consensus 9 ~~el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVpr~-~w~~t~LkeGD~IEII~~VgGGs 67 (326)
T PRK11840 9 PRQVPAGLTIAALLAE----LGLAPKKVAVERNLEIVPRS-EYGQVALEEGDELEIVHFVGGGS 67 (326)
T ss_pred EEecCCCCcHHHHHHH----cCCCCCeEEEEECCEECCHH-HcCccccCCCCEEEEEEEecCCC
Confidence 3666778899988765 58899999999999999632 34455688899999998888883
No 225
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=61.29 E-value=57 Score=23.36 Aligned_cols=58 Identities=12% Similarity=0.252 Sum_probs=38.7
Q ss_pred CCceEEEeecCCchHHHHHHHHhhhhCCCCCceEEEECCeecccCccccccCcCcCcEEEEEEEec
Q 012749 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (457)
Q Consensus 161 ~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~I~~~~~i~l~~~~~ 226 (457)
+|+.+.+ + ..|+.+|.+.+ +++++......+++... .....+.-+++|+.|.++.-..
T Consensus 6 Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~V~ 63 (65)
T PRK06488 6 NGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILSPMQ 63 (65)
T ss_pred CCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEecc
Confidence 5666665 3 35888888755 56665555667777765 3344567789999998775433
No 226
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=61.07 E-value=18 Score=37.86 Aligned_cols=65 Identities=35% Similarity=0.524 Sum_probs=42.2
Q ss_pred CceEEEeecCCchHHHHHHHHhhh--hCCCC------CceEEEE--C--Ce-ecccC-------------ccccccCcCc
Q 012749 162 GKTITLEVESSDTIDNVKAKIQDK--EGIPP------DQQRLIF--A--GK-QLEDG-------------RTLADYNIQK 215 (457)
Q Consensus 162 g~~~~~~v~~~~tV~~lK~~I~~~--~gip~------~~q~L~~--~--g~-~L~d~-------------~tL~~y~I~~ 215 (457)
...+.+.|-.-|||.++|++|-+. .+.|. +..-|-+ . |+ .|.|. .||++|+|.+
T Consensus 201 ~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 280 (539)
T PF08337_consen 201 SEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPD 280 (539)
T ss_dssp STCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--T
T ss_pred CceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCC
Confidence 345888999999999999999764 24442 3333422 2 23 45442 3999999999
Q ss_pred CcEEEEEEEec
Q 012749 216 ESTLHLVLRLR 226 (457)
Q Consensus 216 ~~~i~l~~~~~ 226 (457)
|+++-++.+..
T Consensus 281 ga~vaLv~k~~ 291 (539)
T PF08337_consen 281 GATVALVPKQH 291 (539)
T ss_dssp TEEEEEEES--
T ss_pred CceEEEeeccc
Confidence 99999888754
No 227
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=57.43 E-value=38 Score=33.63 Aligned_cols=70 Identities=23% Similarity=0.272 Sum_probs=53.6
Q ss_pred eeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhc--CCCCCCeEEEEc----Cee--cCCCCcccccCCCCCCEEEEEE
Q 012749 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFA----GKQ--LEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~--~ip~~~q~l~~~----g~~--L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
|-+.+|..+| .+.++++++++.+-|-.++-+.. +-.|++..+.-+ |.. +..+.|+.+.|++.|..++|..
T Consensus 1 Mi~rfRsk~G-~~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 1 MIFRFRSKEG-QRRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred CeEEEecCCC-ceeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 4456677777 58899999999999988887765 456777766643 332 3466899999999999999876
No 228
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=57.34 E-value=16 Score=27.53 Aligned_cols=35 Identities=11% Similarity=0.252 Sum_probs=31.6
Q ss_pred EEEEEeecCccHHHHHHHhhcccCCCCCCceEEec
Q 012749 316 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 350 (457)
Q Consensus 316 ~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~ 350 (457)
|+.|.+.++....+|..+|.++++.|+++-.|.|.
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~ 42 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYR 42 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEec
Confidence 55688999999999999999999999999888874
No 229
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=56.40 E-value=54 Score=24.00 Aligned_cols=51 Identities=10% Similarity=0.160 Sum_probs=38.2
Q ss_pred eEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEEE
Q 012749 240 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 299 (457)
Q Consensus 240 ~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~ 299 (457)
...+++.++.|+.+|-+.+ ++++..-....+|+... .++-+++|+.+.++.
T Consensus 15 ~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~-----~~~~l~~gD~Veii~ 65 (70)
T PRK08364 15 EKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVAL-----EDDPVKDGDYVEVIP 65 (70)
T ss_pred ceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CCcCcCCCCEEEEEc
Confidence 5567778888999987655 67777677778888774 356688899887654
No 230
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=55.68 E-value=26 Score=33.05 Aligned_cols=70 Identities=16% Similarity=0.266 Sum_probs=55.9
Q ss_pred eeeEEEecCCcEEEEEeecCccHHHHHHHhhcccCCCCCCceEE--ecCeec---cCCCcccccccccCceEEEE
Q 012749 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLV 374 (457)
Q Consensus 305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L---~d~~~L~~~~i~~~~~l~l~ 374 (457)
..+.|+..+|.+++..++...|..+++..+.-+.+.-.+--.|. |+-..+ +-.++|..+++-|.+++.+.
T Consensus 211 crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil~ 285 (290)
T KOG2689|consen 211 CRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLILE 285 (290)
T ss_pred eEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheecc
Confidence 46889999999999999999999999999999988777543444 544444 33588889999888887765
No 231
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=55.47 E-value=89 Score=23.65 Aligned_cols=35 Identities=29% Similarity=0.448 Sum_probs=30.2
Q ss_pred CCEEEEEecCCchHHHHHHHHhhhcCCC--CCCeEEE
Q 012749 390 GKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLI 424 (457)
Q Consensus 390 g~~~~l~v~~~~tV~~lK~~i~~~~~ip--~~~q~l~ 424 (457)
+...++.|+.++|..++-..+.++.+++ +.+..|+
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ 48 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALV 48 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEE
Confidence 6678999999999999999999999998 5555554
No 232
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=55.41 E-value=54 Score=24.96 Aligned_cols=53 Identities=19% Similarity=0.397 Sum_probs=41.2
Q ss_pred CCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEE-cCeecCCCCcccccCCCCCCEEEEEE
Q 012749 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 390 g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~-~g~~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
+..+.+.+++..||+++-+. .|||...--++. ||+...-+ |-+++|+.|.+.-
T Consensus 22 ~~~~~~~~~~~~tvkd~IEs----LGVP~tEV~~i~vNG~~v~~~-----~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIES----LGVPHTEVGLILVNGRPVDFD-----YRLKDGDRVAVYP 75 (81)
T ss_pred CCceEEecCCCCcHHHHHHH----cCCChHHeEEEEECCEECCCc-----ccCCCCCEEEEEe
Confidence 45688899999999987554 799999997665 89988654 5566799887753
No 233
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=55.11 E-value=23 Score=29.14 Aligned_cols=54 Identities=20% Similarity=0.482 Sum_probs=36.5
Q ss_pred EecC-CchHHHHHHHHhhhc----CCCCC------CeEEEEcC-----------------eec---CCCCcccccCCCCC
Q 012749 396 EVES-SDTIDNVKAKIQDKE----GIPPD------QQRLIFAG-----------------KQL---EDGRTLADYNIQKE 444 (457)
Q Consensus 396 ~v~~-~~tV~~lK~~i~~~~----~ip~~------~q~l~~~g-----------------~~L---~d~~tL~~~~i~~~ 444 (457)
.|+. +.||.+|++.+.+.. |+||- ..++++.. -.| +++.||.++||.++
T Consensus 21 ~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nE 100 (122)
T PF10209_consen 21 NVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENE 100 (122)
T ss_pred cCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCcc
Confidence 4776 889999988777664 56553 33344311 144 56778999999998
Q ss_pred CEEEE
Q 012749 445 STLHL 449 (457)
Q Consensus 445 ~~i~l 449 (457)
..|-+
T Consensus 101 TEiSf 105 (122)
T PF10209_consen 101 TEISF 105 (122)
T ss_pred ceeee
Confidence 87754
No 234
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=54.95 E-value=48 Score=24.30 Aligned_cols=62 Identities=13% Similarity=0.218 Sum_probs=46.9
Q ss_pred eEEEeecCCchHHHHHHHHhhhhCC--CCCceEEEECCeecccCccccccCcCcCcEEEEEEEecC
Q 012749 164 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (457)
Q Consensus 164 ~~~~~v~~~~tV~~lK~~I~~~~gi--p~~~q~L~~~g~~L~d~~tL~~y~I~~~~~i~l~~~~~~ 227 (457)
...+.+....||.+|.+.+..+.+- ......+..+|+...+ .-.++-+++|++|.++....+
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvsG 76 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVSG 76 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTST
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCCC
Confidence 5567888999999999999877531 2356778888988887 366777899999988764443
No 235
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=54.82 E-value=9.5 Score=29.97 Aligned_cols=30 Identities=33% Similarity=0.681 Sum_probs=21.3
Q ss_pred EEEecCcccCCCCccccc-ccccCCcceEEE
Q 012749 118 RLIFAGKQLEDGRTLADY-NIQKESTLHLVL 147 (457)
Q Consensus 118 ~L~~~g~~L~d~~tl~~y-~i~~~s~i~l~~ 147 (457)
.|.|+|++|..+.+|++| |-.+-+.|.+.+
T Consensus 3 ~LW~aGK~l~~~k~l~dy~GkNEKtKiivKl 33 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDYIGKNEKTKIIVKL 33 (98)
T ss_pred eEEeccccccCCCcHHHhcCCCcceeEEEEe
Confidence 478999999999999999 333333343333
No 236
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=54.40 E-value=43 Score=25.26 Aligned_cols=57 Identities=14% Similarity=0.154 Sum_probs=37.0
Q ss_pred ceEEEeecCCchHHHHHHHHhhhhC-CCC--CceEEEECCeecccCccccccCcCcCcEEEEEEE
Q 012749 163 KTITLEVESSDTIDNVKAKIQDKEG-IPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (457)
Q Consensus 163 ~~~~~~v~~~~tV~~lK~~I~~~~g-ip~--~~q~L~~~g~~L~d~~tL~~y~I~~~~~i~l~~~ 224 (457)
....++++...||++|.+.+..... +.. ..-.+..+|+... .++-+.+|++|.++..
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~Pp 78 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAIIPP 78 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEeCC
Confidence 4467778888999999999976541 111 1123456666653 3456788999877653
No 237
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=54.05 E-value=34 Score=26.10 Aligned_cols=37 Identities=19% Similarity=0.323 Sum_probs=31.0
Q ss_pred ccCCceEEEEeec--CccHHHHHHHHhhhcCCCCCCeEEEe
Q 012749 235 TLTGKTITLEVES--SDTIDNVKAKIQDKEGIPPDQQRLIF 273 (457)
Q Consensus 235 ~~~g~~~~~~v~~--~~tV~~lK~~I~~~~~ip~~~q~L~~ 273 (457)
+.+|.++.+.+.+ +-+..+|++++..+++++ ...+.|
T Consensus 6 ty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKY 44 (81)
T cd06396 6 TYNGESQSFLVSDSENTTWASVEAMVKVSFGLN--DIQIKY 44 (81)
T ss_pred EECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC--cceeEE
Confidence 3678899999999 669999999999999998 455555
No 238
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=54.04 E-value=36 Score=25.36 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=31.1
Q ss_pred CCceEEEEee-cCccHHHHHHHHhhhcCCCCCCeEEEeCC
Q 012749 237 TGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAG 275 (457)
Q Consensus 237 ~g~~~~~~v~-~~~tV~~lK~~I~~~~~ip~~~q~L~~~g 275 (457)
+|....+.+. ++.+..+|+++|+++++++.....+.|.+
T Consensus 8 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 8 GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 3567778888 88999999999999999876555666644
No 239
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=54.00 E-value=21 Score=28.77 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=28.8
Q ss_pred eEEEecCCcEEEEEeecCccHHHHHHHhhcccCCCC
Q 012749 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 342 (457)
Q Consensus 307 i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~ 342 (457)
+++...+|.+.++.|....+-.++|+++..|+|++.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 567788999999999999999999999999999988
No 240
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=53.14 E-value=83 Score=25.33 Aligned_cols=64 Identities=28% Similarity=0.316 Sum_probs=44.8
Q ss_pred CCEEEEEecCCchHHHHHHHHhhh------cCCCCC-CeEEEEcCe--ecCCCCcccccC-----CCCCCEEEEEEec
Q 012749 390 GKTITLEVESSDTIDNVKAKIQDK------EGIPPD-QQRLIFAGK--QLEDGRTLADYN-----IQKESTLHLVLRL 453 (457)
Q Consensus 390 g~~~~l~v~~~~tV~~lK~~i~~~------~~ip~~-~q~l~~~g~--~L~d~~tL~~~~-----i~~~~~i~l~~rl 453 (457)
...+++.+++++|+.+|.+.+-.+ ..-+++ +..|--.|+ -|..+..|.+|. +..|..++|++..
T Consensus 28 ~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~~~~L~L~~ 105 (108)
T smart00144 28 QQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGREPHLVLMT 105 (108)
T ss_pred ceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCCCceEEEEe
Confidence 456999999999999999887776 122333 455655666 366777777774 4567788887754
No 241
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=52.99 E-value=81 Score=25.40 Aligned_cols=63 Identities=29% Similarity=0.333 Sum_probs=42.9
Q ss_pred cEEEEEecCCCcHHHHHHHHhhh----hC--CCCc-cceEeeccEE--ccCCCccccccc-----cccccceEEEee
Q 012749 11 KTITLEVESSDTIDNVKAKIQDK----EG--IPPD-QQRLIFAGKQ--LEDGRTLADYNI-----QKESTLHLVLRL 73 (457)
Q Consensus 11 ~~~~~~v~~~dtv~~ik~ki~~~----~g--ip~~-~q~l~~~g~~--L~~~~tl~~y~I-----~~~sti~l~~~~ 73 (457)
.++++.+.+++|++++.+.+-.+ .+ -+++ ...|...|+. |..++.|.+|.. ..+..+||++..
T Consensus 29 ~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~~~~L~L~~ 105 (108)
T smart00144 29 QTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGREPHLVLMT 105 (108)
T ss_pred eeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCCCceEEEEe
Confidence 57999999999999998877665 22 2222 4456566664 667777777753 345677777643
No 242
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=52.72 E-value=76 Score=23.73 Aligned_cols=58 Identities=14% Similarity=0.228 Sum_probs=39.6
Q ss_pred eEEEeecCC-chHHHHHHHHhhhhC-CC--CCceEEEECCeecccCccccccCcCcCcEEEEEEEec
Q 012749 164 TITLEVESS-DTIDNVKAKIQDKEG-IP--PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (457)
Q Consensus 164 ~~~~~v~~~-~tV~~lK~~I~~~~g-ip--~~~q~L~~~g~~L~d~~tL~~y~I~~~~~i~l~~~~~ 226 (457)
...++++.. .||.+|++.+.++.+ +- .....+..+++...+ +.-+++|++|.++..-+
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~Ppvs 78 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVS 78 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCC
Confidence 356777766 899999999988764 11 122355566776653 56788899998775443
No 243
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=51.25 E-value=51 Score=25.11 Aligned_cols=33 Identities=30% Similarity=0.337 Sum_probs=28.8
Q ss_pred eEEEEeecCccHHHHHHHHhhhcCC--CCCCeEEE
Q 012749 240 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLI 272 (457)
Q Consensus 240 ~~~~~v~~~~tV~~lK~~I~~~~~i--p~~~q~L~ 272 (457)
.-++.|...+|+.+|-+++.+++++ ++..+.|+
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 7789999999999999999999998 55567774
No 244
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=50.98 E-value=1.7e+02 Score=25.46 Aligned_cols=143 Identities=17% Similarity=0.148 Sum_probs=72.0
Q ss_pred cccCCCCeEEEEEeecCceeeEEEecCCcEEEEEe-----ecCccHHHHHHHhhcccCCCCCCceEEecCeeccCCCccc
Q 012749 287 YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEV-----ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 361 (457)
Q Consensus 287 ~~i~~~~tl~l~~~~~~~~~i~i~~~~g~~~~l~v-----~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~L~ 361 (457)
|-+.+||.|.+...-.+.+...+.....-++++.. -.+.|++++++.|++++.
T Consensus 1 Y~l~pGD~l~i~v~~~~~~~~~~~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~---------------------- 58 (165)
T TIGR03027 1 YVIGPGDSLNINVWRNPELSGSVPVRPDGKITTPLVGDLVASGKTPTQLARDIEEKLA---------------------- 58 (165)
T ss_pred CCcCCCCEEEEEEcCCcccccceEECCCCeEeecccCeEEECCCCHHHHHHHHHHHHH----------------------
Confidence 44666777665554444333323222233333332 358899999999998852
Q ss_pred ccccccCceEEEEEEe-cCceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCC-CCCCeEEEE--cCe--ec-----
Q 012749 362 DYNIQKESTLHLVLRL-RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIF--AGK--QL----- 430 (457)
Q Consensus 362 ~~~i~~~~~l~l~~~~-~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~i-p~~~q~l~~--~g~--~L----- 430 (457)
.|=..+.-++.+..-. .....++|-..-.+.-.+.+.++.|+.++-...-....- ......+.- +|+ ..
T Consensus 59 ~~~~~p~v~V~v~~~~~~~~~~V~V~GeV~~PG~y~~~~~~tl~~ai~~AGG~~~~a~~~~v~i~R~~~~~~~~~~idl~ 138 (165)
T TIGR03027 59 KYVRNPVVTVIVTGFIGPFSEQIRVVGAAANPQALPYREGMTLLDVMIAVGGLTDFADGNRAVIVRTVDGEQKQISVRLK 138 (165)
T ss_pred HhccCCeEEEEEeecccCCCcEEEEEEEeCCCceeeeCCCCcHHHHHHHcCCCCcccCCCeEEEEECCCCceEEEEEEHH
Confidence 0100122223332110 124567775543334445667888888876664333221 122334443 232 11
Q ss_pred ---CCCCcccccCCCCCCEEEEEE
Q 012749 431 ---EDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 431 ---~d~~tL~~~~i~~~~~i~l~~ 451 (457)
.+...=.+.-+++||+|++--
T Consensus 139 ~l~~~g~~~~n~~L~~gD~I~Vp~ 162 (165)
T TIGR03027 139 DLIKDGDVTANVELKPGDVLIIPE 162 (165)
T ss_pred HHhhcCCccCCceeCCCCEEEEec
Confidence 112222455688999998753
No 245
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=50.69 E-value=53 Score=25.02 Aligned_cols=33 Identities=30% Similarity=0.337 Sum_probs=28.9
Q ss_pred EEEEEecCCchHHHHHHHHhhhcCC--CCCCeEEE
Q 012749 392 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLI 424 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~~i--p~~~q~l~ 424 (457)
..++.|++++|+.++-..+.+++++ .+....|+
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 8899999999999999999999999 45556663
No 246
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=50.57 E-value=15 Score=28.94 Aligned_cols=28 Identities=39% Similarity=0.788 Sum_probs=21.9
Q ss_pred eEeeccEEccCCCccccccccccccceEE
Q 012749 42 RLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (457)
Q Consensus 42 ~l~~~g~~L~~~~tl~~y~I~~~sti~l~ 70 (457)
.|.|.|++|.++.+|.+| +-.|..-.++
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNEKtKii 30 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNEKTKII 30 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCcceeEE
Confidence 489999999999999999 6555544443
No 247
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=50.42 E-value=40 Score=36.27 Aligned_cols=44 Identities=23% Similarity=0.448 Sum_probs=39.2
Q ss_pred ccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCcEEEecCccc
Q 012749 83 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 126 (457)
Q Consensus 83 ~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L 126 (457)
+.++..+.+.++++.|+..++++|...+|+|...|.|+|.|...
T Consensus 321 ~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 321 MVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLS 364 (732)
T ss_pred eccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCcc
Confidence 45567788999999999999999999999999999999997553
No 248
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=50.29 E-value=1.1e+02 Score=23.15 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=26.6
Q ss_pred CCcEEEEEecCCCcHHHHHHHHhhhhCCC
Q 012749 9 TGKTITLEVESSDTIDNVKAKIQDKEGIP 37 (457)
Q Consensus 9 ~g~~~~~~v~~~dtv~~ik~ki~~~~gip 37 (457)
+|..-++.|..++|..+|-+.+.+|.++.
T Consensus 11 ~~~~kti~V~~~~t~~~Vi~~~l~k~~l~ 39 (87)
T cd01768 11 GGTYKTLRVSKDTTAQDVIQQLLKKFGLD 39 (87)
T ss_pred CccEEEEEECCCCCHHHHHHHHHHHhCCc
Confidence 36778899999999999999999999988
No 249
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=49.38 E-value=1.1e+02 Score=23.32 Aligned_cols=61 Identities=11% Similarity=0.255 Sum_probs=39.7
Q ss_pred ceEEEeecCCchHHHHHHHHhhhhCC------C-----CCceEEEECCeecccCccccccCcCcCcEEEEEEEecC
Q 012749 163 KTITLEVESSDTIDNVKAKIQDKEGI------P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (457)
Q Consensus 163 ~~~~~~v~~~~tV~~lK~~I~~~~gi------p-----~~~q~L~~~g~~L~d~~tL~~y~I~~~~~i~l~~~~~~ 227 (457)
....++++ ..||.+|.+.+.++++- . .....+..+|+....+.. .-+++|++|.++...++
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsG 87 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSG 87 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcC
Confidence 34567776 88999999999877531 0 122445566766654321 56889999987765443
No 250
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=48.97 E-value=32 Score=27.59 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=32.3
Q ss_pred EecCCchHHHHHHHHhhhcCCCCCC-eEEEEcCeecCCCCcccc
Q 012749 396 EVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLAD 438 (457)
Q Consensus 396 ~v~~~~tV~~lK~~i~~~~~ip~~~-q~l~~~g~~L~d~~tL~~ 438 (457)
=|+.+.||+++...|..+..+++++ ..|+.++..+..+.++++
T Consensus 38 Lvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~e 81 (104)
T PF02991_consen 38 LVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGE 81 (104)
T ss_dssp EEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHH
T ss_pred EEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHH
Confidence 3799999999999999999998876 345557755667777765
No 251
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=48.96 E-value=40 Score=26.47 Aligned_cols=60 Identities=20% Similarity=0.356 Sum_probs=38.9
Q ss_pred EEecCCchHHHHHHHHhhhcCCCCCCeEEEEc-Ce------ecCCCC---cc--cccCCCCCCEEEEEEecCCC
Q 012749 395 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GK------QLEDGR---TL--ADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 395 l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~-g~------~L~d~~---tL--~~~~i~~~~~i~l~~rl~GG 456 (457)
+++....||.+|-..+++.. |...-+++.. |+ .|-|+. .+ .++-+++|+.|.+.-.+-||
T Consensus 23 ~~~~~~~tV~dll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P~v~GG 94 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNL--LEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFISTLHGG 94 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhC--chhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEECCCCCC
Confidence 34446779999999999886 3334344432 21 222222 23 35778999999999888887
No 252
>PRK01777 hypothetical protein; Validated
Probab=48.92 E-value=1.3e+02 Score=23.66 Aligned_cols=65 Identities=8% Similarity=0.074 Sum_probs=41.5
Q ss_pred ceeeEEEeC-CC--CEEEEEecCCchHHHHHHHHhhhcCCCCC--C-----eEEEEcCeecCCCCcccccCCCCCCEEEE
Q 012749 380 GMQIFVKTL-TG--KTITLEVESSDTIDNVKAKIQDKEGIPPD--Q-----QRLIFAGKQLEDGRTLADYNIQKESTLHL 449 (457)
Q Consensus 380 ~~~i~v~~~-~g--~~~~l~v~~~~tV~~lK~~i~~~~~ip~~--~-----q~l~~~g~~L~d~~tL~~~~i~~~~~i~l 449 (457)
.|+|.|.+. .+ ....+++++++||.++-... ||+.. . -.+.-+|+...-+. -+++|+.|.+
T Consensus 3 ~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~s----gi~~~~pei~~~~~~vgI~Gk~v~~d~-----~L~dGDRVeI 73 (95)
T PRK01777 3 KIRVEVVYALPERQYLQRLTLQEGATVEEAIRAS----GLLELRTDIDLAKNKVGIYSRPAKLTD-----VLRDGDRVEI 73 (95)
T ss_pred eeEEEEEEECCCceEEEEEEcCCCCcHHHHHHHc----CCCccCcccccccceEEEeCeECCCCC-----cCCCCCEEEE
Confidence 455655442 22 23678899999999987665 56555 2 24555778775544 4556899887
Q ss_pred EEec
Q 012749 450 VLRL 453 (457)
Q Consensus 450 ~~rl 453 (457)
.-.|
T Consensus 74 yrPL 77 (95)
T PRK01777 74 YRPL 77 (95)
T ss_pred ecCC
Confidence 6544
No 253
>PRK07440 hypothetical protein; Provisional
Probab=48.48 E-value=68 Score=23.57 Aligned_cols=62 Identities=16% Similarity=0.277 Sum_probs=40.4
Q ss_pred ceeeEEEecCCcEEEEEeecCccHHHHHHHhhcccCCCCCCceEEecCeeccCCCcccccccccCceEEEEE
Q 012749 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 375 (457)
Q Consensus 304 ~~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~L~~~~i~~~~~l~l~~ 375 (457)
.|.|. .||+. .++..+.|+.+|-+ .+++++..--...+|..++-+. +.+.-++.++.+.+..
T Consensus 4 ~m~i~---vNG~~--~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r~~-w~~~~L~~gD~IEIv~ 65 (70)
T PRK07440 4 PITLQ---VNGET--RTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHRQF-WEQTQVQPGDRLEIVT 65 (70)
T ss_pred ceEEE---ECCEE--EEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCHHH-cCceecCCCCEEEEEE
Confidence 45553 45765 45677899998854 4566665444557887775433 5666678888888764
No 254
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=48.20 E-value=49 Score=25.03 Aligned_cols=49 Identities=20% Similarity=0.464 Sum_probs=34.4
Q ss_pred chHHHHHHHHhhhcCCCCCCeEEEE--cCeecCCCCcccccCCCCCCEEEEEEe
Q 012749 401 DTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 401 ~tV~~lK~~i~~~~~ip~~~q~l~~--~g~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
.+..||+.+.+++.+++.+..+|.. +|..++|+.-+... +..|..+.++
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~tL---p~nT~lm~L~ 71 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQTL---PDNTVLMLLE 71 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCCS---SSSEEEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhhC---CCCCEEEEEC
Confidence 6899999999999999977777766 79999877432221 2345555543
No 255
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=48.03 E-value=1.1e+02 Score=22.69 Aligned_cols=64 Identities=20% Similarity=0.238 Sum_probs=53.2
Q ss_pred EEEEecCCchHHHHHHHHhhhcCCCCCCeEE-EEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 393 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRL-IFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 393 ~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l-~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
..+.|+.......+-...++++++|+..--+ .-+|.-++..+|-..+-++.|+.+.+.-|-|=|
T Consensus 18 kvlsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliPRDrvG 82 (82)
T cd01766 18 KVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRDRVG 82 (82)
T ss_pred eEEeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEeeecccccCC
Confidence 4568888888888888889999999877654 457899999999999999999999998886643
No 256
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=47.98 E-value=85 Score=24.75 Aligned_cols=37 Identities=22% Similarity=0.230 Sum_probs=30.2
Q ss_pred eEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCC
Q 012749 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 419 (457)
Q Consensus 383 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~ 419 (457)
|.|=..++...++.++.++||+|+-..+..+..++..
T Consensus 5 IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~ 41 (97)
T cd01775 5 IRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSG 41 (97)
T ss_pred EEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCC
Confidence 3333355667899999999999999999999988873
No 257
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=47.13 E-value=68 Score=23.99 Aligned_cols=44 Identities=20% Similarity=0.411 Sum_probs=33.9
Q ss_pred EEEEccCCcEEE-EEEcCCCCHHHHHHHHhhhhCCCCCCcEEEecC
Q 012749 79 IFVKTLTGKTIT-LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 123 (457)
Q Consensus 79 i~vk~~~g~~~~-l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g 123 (457)
+.+. ..|.... +.+.+..+..+|+.+|+.+.+.+.....|.|..
T Consensus 4 vK~~-~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 4 VKVR-YGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp EEEE-ETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred EEEE-ECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 3443 3444444 889999999999999999999997777777764
No 258
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=46.95 E-value=78 Score=24.37 Aligned_cols=66 Identities=23% Similarity=0.274 Sum_probs=47.4
Q ss_pred eEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEc-------CeecCCCCc----ccccCCCCCCEEE
Q 012749 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-------GKQLEDGRT----LADYNIQKESTLH 448 (457)
Q Consensus 383 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~-------g~~L~d~~t----L~~~~i~~~~~i~ 448 (457)
|.|-..+|.+.++.|+..+|+.++-..+..+.+...+.-+-.+. .+.++|... |+..+....+.++
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~vvdvl~~W~~~~~n~l~ 81 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHELVVEVLSTWHSAGNSVLF 81 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHHHHHHHHhcccCCCcEEE
Confidence 45556789999999999999999999999999888777665543 334566543 4445554444443
No 259
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=46.46 E-value=53 Score=25.14 Aligned_cols=38 Identities=26% Similarity=0.355 Sum_probs=31.1
Q ss_pred eEEEEc-CCCcEEEEEecCCCcHHHHHHHHhhhhCCCCc
Q 012749 2 QIFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 39 (457)
Q Consensus 2 ~i~~~~-~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~ 39 (457)
.||... .++..-++.|.+++|+.+|-..+.+|.++..+
T Consensus 6 rV~~~~~~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~ 44 (90)
T smart00314 6 RVYVDDLPGGTYKTLRVSSRTTARDVIQQLLEKFHLTDD 44 (90)
T ss_pred EEecccCCCCcEEEEEECCCCCHHHHHHHHHHHhCCCCC
Confidence 355544 45778889999999999999999999998753
No 260
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=45.70 E-value=66 Score=24.53 Aligned_cols=36 Identities=17% Similarity=0.309 Sum_probs=29.1
Q ss_pred CCCCEEEEEecC--CchHHHHHHHHhhhcCCCCCCeEEEE
Q 012749 388 LTGKTITLEVES--SDTIDNVKAKIQDKEGIPPDQQRLIF 425 (457)
Q Consensus 388 ~~g~~~~l~v~~--~~tV~~lK~~i~~~~~ip~~~q~l~~ 425 (457)
..|.+..+.+++ +.+..+|++.|....+++ .+.|-|
T Consensus 7 y~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKY 44 (81)
T cd06396 7 YNGESQSFLVSDSENTTWASVEAMVKVSFGLN--DIQIKY 44 (81)
T ss_pred ECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC--cceeEE
Confidence 456788889998 779999999999999999 444433
No 261
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=45.24 E-value=1e+02 Score=22.01 Aligned_cols=56 Identities=20% Similarity=0.360 Sum_probs=38.4
Q ss_pred EeecCCchHHHHHHHHhhhhCCCCCceEEEECCeecccCccccccCcCcCcEEEEEEEecC
Q 012749 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (457)
Q Consensus 167 ~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~I~~~~~i~l~~~~~~ 227 (457)
++++...||.+|.+.+ +++.+...+..+|+.... ....++-+.+|+.|.++.-..+
T Consensus 9 ~~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~-~~~~~~~L~~gD~V~ii~~v~G 64 (65)
T cd00565 9 REVEEGATLAELLEEL----GLDPRGVAVALNGEIVPR-SEWASTPLQDGDRIEIVTAVGG 64 (65)
T ss_pred EEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCH-HHcCceecCCCCEEEEEEeccC
Confidence 4455678899888765 466777777788877644 2334456899999987754433
No 262
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=45.07 E-value=73 Score=25.20 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=34.5
Q ss_pred EEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCcEEEec
Q 012749 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 122 (457)
Q Consensus 81 vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~ 122 (457)
++..+|.+..+.|+.+.|..+|+.++.+..+++.. ..|.|.
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky~ 57 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKYQ 57 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEEE
Confidence 45678999999999999999999999999988775 555543
No 263
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=44.21 E-value=1.4e+02 Score=22.92 Aligned_cols=61 Identities=23% Similarity=0.375 Sum_probs=43.8
Q ss_pred EEEEEecCCchHHHHHHHHhhhc-C--CC--CC-CeEEEEcC--eecCCCCcccccCCCCCCEEEEEEe
Q 012749 392 TITLEVESSDTIDNVKAKIQDKE-G--IP--PD-QQRLIFAG--KQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~-~--ip--~~-~q~l~~~g--~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
...+-|+..+|+.++=++++... | ++ +. ..++.++| ..+..+.++++.||.+-+.|.+...
T Consensus 16 ~~Lv~VDt~dTmdqVA~k~A~HsVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~vev~~~ 84 (85)
T PF06234_consen 16 LQLVPVDTEDTMDQVAAKVAHHSVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWVEVRFE 84 (85)
T ss_dssp EEEEEEETT-BHHHHHHHHHTTTTTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEEEEEEE
T ss_pred EEEEEeCCCCcHHHHHHHHhhhhcceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEEEEEEc
Confidence 35678999999999999998764 3 23 23 45677888 8899999999999999999988754
No 264
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=44.14 E-value=95 Score=24.71 Aligned_cols=72 Identities=22% Similarity=0.387 Sum_probs=43.9
Q ss_pred ceeeEEEeC-CCCEEEEEecCCchHHHHHHHHhhh--cCCCCC----CeEEEEcCe--ecCCCCcccccC-----CCCCC
Q 012749 380 GMQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDK--EGIPPD----QQRLIFAGK--QLEDGRTLADYN-----IQKES 445 (457)
Q Consensus 380 ~~~i~v~~~-~g~~~~l~v~~~~tV~~lK~~i~~~--~~ip~~----~q~l~~~g~--~L~d~~tL~~~~-----i~~~~ 445 (457)
.+.|.|... .+..+++.++++.|+.+|...+-.+ .+..+. +..|--.|+ -|..+..|.+|. +..+-
T Consensus 16 ~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~ 95 (106)
T PF00794_consen 16 KIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGK 95 (106)
T ss_dssp EEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT-
T ss_pred eEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCC
Confidence 344555554 5668999999999999999888877 222222 456655666 367778888874 23455
Q ss_pred EEEEEE
Q 012749 446 TLHLVL 451 (457)
Q Consensus 446 ~i~l~~ 451 (457)
.++|.+
T Consensus 96 ~~~L~L 101 (106)
T PF00794_consen 96 DPHLVL 101 (106)
T ss_dssp -EEEEE
T ss_pred CcEEEE
Confidence 555554
No 265
>PF10787 YfmQ: Uncharacterised protein from bacillus cereus group; InterPro: IPR019723 This entry represents proteins conserved in the Bacillus cereus group. Several members are called YfmQ but the function is not known.
Probab=44.06 E-value=60 Score=27.36 Aligned_cols=87 Identities=22% Similarity=0.323 Sum_probs=60.5
Q ss_pred CCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCc------------cccccccccccceEEEeecCceEEEEEccCC
Q 012749 19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT------------LADYNIQKESTLHLVLRLRGGMQIFVKTLTG 86 (457)
Q Consensus 19 ~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~t------------l~~y~I~~~sti~l~~~~~~~~~i~vk~~~g 86 (457)
|+-.|+.+-+|.+=+.....+.=+.-++|+.|+++.. |+.|.+.++..-.+.-+-.++..+.+++-.|
T Consensus 23 Pt~vVe~liskfe~H~kL~~~~~tVti~G~~Lege~K~~~I~~FNeAiFLekyY~~P~~e~~~l~pe~~gtPlvI~tKkG 102 (149)
T PF10787_consen 23 PTSVVEWLISKFELHPKLDEENTTVTIDGKRLEGEDKSQIIDQFNEAIFLEKYYIPPGNEERYLHPENSGTPLVIDTKKG 102 (149)
T ss_pred cHHHHHHHHHHheecccccccceEEEECCeecCchHHHHHHHHHhHHHHHHhhccCCCCcccccCcccCCCCEEEEeccC
Confidence 6778888888887777777777788999999987532 3446666665533333334567888998887
Q ss_pred cE-EEEEEcC-CCCHHHHHHH
Q 012749 87 KT-ITLEVES-SDTIDNVKAK 105 (457)
Q Consensus 87 ~~-~~l~v~~-~~tV~~lK~~ 105 (457)
+. +.+-+.+ +|-|.-+|+.
T Consensus 103 K~dv~f~vYsYdDHVDVVKQy 123 (149)
T PF10787_consen 103 KKDVTFFVYSYDDHVDVVKQY 123 (149)
T ss_pred cceeEEEEEecccHHHHHHHh
Confidence 64 7777766 4456666654
No 266
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=42.95 E-value=79 Score=24.17 Aligned_cols=36 Identities=25% Similarity=0.299 Sum_probs=30.3
Q ss_pred CCceEEEEeecCccHHHHHHHHhhhcCCCC--CCeEEE
Q 012749 237 TGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLI 272 (457)
Q Consensus 237 ~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~--~~q~L~ 272 (457)
++...++.|..++|+.+|-+.+.++++++. ..+.|+
T Consensus 14 ~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~ 51 (90)
T smart00314 14 GGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLV 51 (90)
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEE
Confidence 466788999999999999999999999864 456665
No 267
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=42.93 E-value=32 Score=26.96 Aligned_cols=59 Identities=19% Similarity=0.293 Sum_probs=34.7
Q ss_pred EeecCCchHHHHHHHHhhhhCCCCCceEEEECC-------eeccc---Cccc--cccCcCcCcEEEEEEEecC
Q 012749 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-------KQLED---GRTL--ADYNIQKESTLHLVLRLRG 227 (457)
Q Consensus 167 ~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g-------~~L~d---~~tL--~~y~I~~~~~i~l~~~~~~ 227 (457)
++++...||.+|-+.+.+.+ |...-+++..+ ..|-+ -+.+ .++-+++|++|.++....+
T Consensus 23 ~~~~~~~tV~dll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P~v~G 93 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNL--LEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFISTLHG 93 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhC--chhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEECCCCC
Confidence 44446779999999998776 23233333222 12211 2233 3577899999988765443
No 268
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=42.69 E-value=77 Score=25.56 Aligned_cols=39 Identities=5% Similarity=0.194 Sum_probs=33.9
Q ss_pred eEEEeecCCchHHHHHHHHhhhhCCCCCceEEEECCeec
Q 012749 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 202 (457)
Q Consensus 164 ~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L 202 (457)
.-.+.|++++|++.+...+.+..++++..+-++|-+..-
T Consensus 46 ~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sF 84 (116)
T KOG3439|consen 46 KSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSF 84 (116)
T ss_pred cceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCcc
Confidence 446789999999999999999999999999988876544
No 269
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=42.23 E-value=36 Score=27.74 Aligned_cols=58 Identities=12% Similarity=0.148 Sum_probs=39.7
Q ss_pred EEecCCchHHHHHHHHhhhcCCCCCCeEE-EEcCeecCCCCcccc---cCCCCCCEEEEEEe
Q 012749 395 LEVESSDTIDNVKAKIQDKEGIPPDQQRL-IFAGKQLEDGRTLAD---YNIQKESTLHLVLR 452 (457)
Q Consensus 395 l~v~~~~tV~~lK~~i~~~~~ip~~~q~l-~~~g~~L~d~~tL~~---~~i~~~~~i~l~~r 452 (457)
+-|+.+.||+++...|....++++++-.. +.++.....+.++++ +.=.++.-|++...
T Consensus 45 flVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~DGfLyl~Ys 106 (112)
T cd01611 45 YLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEHKDEDGFLYMTYS 106 (112)
T ss_pred EEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHHHHHhCCCCCEEEEEEe
Confidence 35999999999999999999999887544 446644455555443 22223556777654
No 270
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=41.36 E-value=1.4e+02 Score=22.97 Aligned_cols=52 Identities=17% Similarity=0.244 Sum_probs=30.0
Q ss_pred CccHHHHHHHHhh-hcCCCC-C---CeEEEeCCc----ccCCCccccccccCCCCeEEEEE
Q 012749 248 SDTIDNVKAKIQD-KEGIPP-D---QQRLIFAGK----QLEDGRTLADYNIQKESTLHLVL 299 (457)
Q Consensus 248 ~~tV~~lK~~I~~-~~~ip~-~---~q~L~~~g~----~L~d~~tl~~~~i~~~~tl~l~~ 299 (457)
..|++++-+.+.+ ++|+.. + ...++|... .-...++|+++||.+|+.+.+-.
T Consensus 8 ~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~D 68 (87)
T PF14732_consen 8 KMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVDD 68 (87)
T ss_dssp T-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEEE
T ss_pred hCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEEE
Confidence 3499999888654 677533 2 345555433 34558899999999999885544
No 271
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=41.19 E-value=1.1e+02 Score=31.73 Aligned_cols=71 Identities=14% Similarity=0.151 Sum_probs=54.1
Q ss_pred eEEEEccCCceEEEEeecCccHHHHHHHHhhhcCC------CCCCeEEEe-CCcccCCCccccccccCCCCeEEEEEee
Q 012749 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI------PPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRL 301 (457)
Q Consensus 230 ~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~i------p~~~q~L~~-~g~~L~d~~tl~~~~i~~~~tl~l~~~~ 301 (457)
+++|... .+.+.+.+..+-.|.++--.|.+..+- ++....|.- +|..++.++||.+.+|.+|+.++|....
T Consensus 4 RVtV~~~-~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~~ 81 (452)
T TIGR02958 4 RVTVLAG-RRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPAS 81 (452)
T ss_pred EEEEeeC-CeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeCC
Confidence 3445443 355888889999999999888887753 233455553 6789999999999999999999998643
No 272
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=40.97 E-value=59 Score=26.80 Aligned_cols=56 Identities=21% Similarity=0.497 Sum_probs=38.3
Q ss_pred ecC-CchHHHHHHHHhhh----hCCCC------CceEEEEC-----------------Ceec---ccCccccccCcCcCc
Q 012749 169 VES-SDTIDNVKAKIQDK----EGIPP------DQQRLIFA-----------------GKQL---EDGRTLADYNIQKES 217 (457)
Q Consensus 169 v~~-~~tV~~lK~~I~~~----~gip~------~~q~L~~~-----------------g~~L---~d~~tL~~y~I~~~~ 217 (457)
|+. +.||.+|++.+.+. -|+|| +...+.+. ...| +++.+|.++||.+..
T Consensus 22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nET 101 (122)
T PF10209_consen 22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENET 101 (122)
T ss_pred CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccc
Confidence 665 88999998887654 35554 22233321 1356 678899999999999
Q ss_pred EEEEEEE
Q 012749 218 TLHLVLR 224 (457)
Q Consensus 218 ~i~l~~~ 224 (457)
.|.++..
T Consensus 102 EiSfF~~ 108 (122)
T PF10209_consen 102 EISFFNM 108 (122)
T ss_pred eeeeeCH
Confidence 9987654
No 273
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.53 E-value=47 Score=32.15 Aligned_cols=56 Identities=13% Similarity=0.195 Sum_probs=42.8
Q ss_pred EEeecCccHHHHHHHhhcccCCCCCCceEEe---cCe-----eccCCCcccccccccCceEEEE
Q 012749 319 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGK-----QLEDGRTLADYNIQKESTLHLV 374 (457)
Q Consensus 319 l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~---~g~-----~L~d~~~L~~~~i~~~~~l~l~ 374 (457)
..+...-||.|+|.++..+-|+.+.+++|++ .|+ ..+.+..|.+|+|+.|+.+.+.
T Consensus 352 ~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 352 GLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred eEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 5566677999999999999999999999884 232 2355677777888777766543
No 274
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=38.17 E-value=1e+02 Score=22.83 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=44.8
Q ss_pred EEEEecCCchHHHHHHHHhhhcCCCCCCeEEEE-cCeecCCCCcccccCCCCCCEEEE
Q 012749 393 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHL 449 (457)
Q Consensus 393 ~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~-~g~~L~d~~tL~~~~i~~~~~i~l 449 (457)
..+.|+.+.....+-...++.+.+|+..-.++- +|.-+...+|-.+.-++.|+.+.|
T Consensus 18 kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLrl 75 (76)
T PF03671_consen 18 KVISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELRL 75 (76)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEEE
T ss_pred eEEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEeee
Confidence 567899999888888888889999998887665 688999999998888888998876
No 275
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=38.14 E-value=79 Score=29.88 Aligned_cols=71 Identities=15% Similarity=0.255 Sum_probs=55.3
Q ss_pred cceeeeeeecCCceEEEeecCCchHHHHHHHHhhhhCCCCCceEEE--ECCeecc---cCccccccCcCcCcEEEE
Q 012749 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHL 221 (457)
Q Consensus 151 ~~~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~---d~~tL~~y~I~~~~~i~l 221 (457)
....+.|+.++|+++...+++..|...++.-+.-..+...+.+.|. |-...+. -.++|...++.+.+++.+
T Consensus 209 s~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred cceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 3467888899999999999999999999999999988777666664 3334442 236888888888777754
No 276
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=37.87 E-value=41 Score=25.85 Aligned_cols=55 Identities=20% Similarity=0.291 Sum_probs=37.6
Q ss_pred EEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCee--------cC------CCCcccccCCCCCCEEEEE
Q 012749 395 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ--------LE------DGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 395 l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~--------L~------d~~tL~~~~i~~~~~i~l~ 450 (457)
++|+++.|+.+|-..+++...+....=.+..+++. |+ =+++|.+. +.+|+.|.++
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~Vt 69 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVT 69 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEE
Confidence 57999999999999999985443333334444332 32 13689999 8899988875
No 277
>PRK08453 fliD flagellar capping protein; Validated
Probab=37.86 E-value=93 Score=33.77 Aligned_cols=85 Identities=22% Similarity=0.321 Sum_probs=49.0
Q ss_pred cCCcEEEEEeecCccHHHHHHHhhcc-----------cCCCCCCceEEecCeeccCC------CcccccccccCceEEE-
Q 012749 312 LTGKTITLEVESSDTIDNVKAKIQDK-----------EGIPPDQQRLIFAGKQLEDG------RTLADYNIQKESTLHL- 373 (457)
Q Consensus 312 ~~g~~~~l~v~~~~Tv~~lK~~I~~~-----------~~ip~~~q~l~~~g~~L~d~------~~L~~~~i~~~~~l~l- 373 (457)
.+|++|+++|+.++|+++|+.+|-+- +|= ....+|++.+...-.+ .+|....+.++. +.+
T Consensus 135 ~~G~~~sIdi~~gtTL~~L~~~INd~~n~~V~Asiv~tG~-~~~y~L~l~s~etGa~n~I~~~~~~~~~~~~~~~-~~~~ 212 (673)
T PRK08453 135 TQGKDYAIDIKAGMTLGDVAQSITDATNGEVMGIVMKTGG-NDPYQLMINSKNTGEDNRIYFGSTLQSTLTNKNA-LSLV 212 (673)
T ss_pred ECCEEEEEEeCCCCcHHHHHHHhcCCCCCCeEEEEEecCC-CccEEEEEeccCcCCCceEEEeccccccccCCcc-cccc
Confidence 45999999999999999999999953 231 1112344333332111 222222232222 112
Q ss_pred EEEecCceeeEEEeCCCCEEEEEec
Q 012749 374 VLRLRGGMQIFVKTLTGKTITLEVE 398 (457)
Q Consensus 374 ~~~~~~~~~i~v~~~~g~~~~l~v~ 398 (457)
...-.+.+.|+++...|+.+.+.+.
T Consensus 213 ~~~~~~~~~~~~~~~~g~~~~~~~~ 237 (673)
T PRK08453 213 DGSGKGDLSLNLKDADGNMHTVPIM 237 (673)
T ss_pred cccccccceeeeeccCCcccccccc
Confidence 1222456889999888877765543
No 278
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=37.40 E-value=1.1e+02 Score=23.64 Aligned_cols=56 Identities=23% Similarity=0.275 Sum_probs=40.0
Q ss_pred EEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCcE-EE------ecCcccCCCCcccc
Q 012749 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LI------FAGKQLEDGRTLAD 134 (457)
Q Consensus 79 i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~-L~------~~g~~L~d~~tl~~ 134 (457)
|.|-..+|..-++.|+...|++++-+.+..+.....+.-- |+ .-.+.++|+..+.+
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~vvd 67 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHELVVE 67 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHHHHH
Confidence 4555688999999999999999999999999886554322 22 11355666654444
No 279
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=37.39 E-value=45 Score=36.25 Aligned_cols=62 Identities=18% Similarity=0.387 Sum_probs=46.8
Q ss_pred CCCEEEEEecC-CchHHHHHHHHhhhcCCCCCCeEEEE-cCeecCCCCcccccC-C-CCCCEEEEE
Q 012749 389 TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYN-I-QKESTLHLV 450 (457)
Q Consensus 389 ~g~~~~l~v~~-~~tV~~lK~~i~~~~~ip~~~q~l~~-~g~~L~d~~tL~~~~-i-~~~~~i~l~ 450 (457)
.|++.+++... +.|+++||.+|+.+.|+...++.+.- +|..+..++.|+.|. . .+-+.|++.
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~StaGTdTnPiffF 68 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFF 68 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhccccCCCCceEEe
Confidence 47777777774 56999999999999999999998766 577788888888775 2 233445443
No 280
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=36.76 E-value=77 Score=24.03 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=33.4
Q ss_pred CCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEE
Q 012749 388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 425 (457)
Q Consensus 388 ~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~ 425 (457)
..|.+.-+.++..-|-+.|+++|+..+++|++..-+.|
T Consensus 7 ~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtY 44 (82)
T cd06397 7 FLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTY 44 (82)
T ss_pred eCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEE
Confidence 44667788888888999999999999999999888888
No 281
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=36.44 E-value=58 Score=24.31 Aligned_cols=49 Identities=18% Similarity=0.356 Sum_probs=34.2
Q ss_pred CccHHHHHHHhhcccCCCCCCceEE--ecCeeccCCCcccccccccCceEEEEE
Q 012749 324 SDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHLVL 375 (457)
Q Consensus 324 ~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L~d~~~L~~~~i~~~~~l~l~~ 375 (457)
..+.++|+.+..+++++|...-+++ -.|.+++++.-+..+ +.++..+..
T Consensus 18 A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~tL---p~nt~l~~L 68 (74)
T smart00266 18 ASSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQTL---PDNTELMAL 68 (74)
T ss_pred cCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHhcC---CCCcEEEEE
Confidence 3588999999999999995544444 588888887755554 344444443
No 282
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=36.31 E-value=1.4e+02 Score=22.79 Aligned_cols=53 Identities=21% Similarity=0.426 Sum_probs=40.5
Q ss_pred CceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEe-CCcccCCCccccccccCCCCeEEEEE
Q 012749 238 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVL 299 (457)
Q Consensus 238 g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~-~g~~L~d~~tl~~~~i~~~~tl~l~~ 299 (457)
+..+.+...+..||+++-+ .+|+|..+--+++ ||+..+- +|-+++|+.+.+..
T Consensus 22 ~~~~~~~~~~~~tvkd~IE----sLGVP~tEV~~i~vNG~~v~~-----~~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIE----SLGVPHTEVGLILVNGRPVDF-----DYRLKDGDRVAVYP 75 (81)
T ss_pred CCceEEecCCCCcHHHHHH----HcCCChHHeEEEEECCEECCC-----cccCCCCCEEEEEe
Confidence 5678889999999999854 5799999866665 7776443 47788999987654
No 283
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=35.57 E-value=1.6e+02 Score=23.00 Aligned_cols=65 Identities=17% Similarity=0.322 Sum_probs=43.2
Q ss_pred CCCEEEEEec-----CCchHHHHHHHHhhhcCCCC-CCeEEEEc---Ce--ecCCCCcccc-----cCCCCCCEEEEEEe
Q 012749 389 TGKTITLEVE-----SSDTIDNVKAKIQDKEGIPP-DQQRLIFA---GK--QLEDGRTLAD-----YNIQKESTLHLVLR 452 (457)
Q Consensus 389 ~g~~~~l~v~-----~~~tV~~lK~~i~~~~~ip~-~~q~l~~~---g~--~L~d~~tL~~-----~~i~~~~~i~l~~r 452 (457)
.|..+-+.++ ++.+..+|+.+|.+..++++ ....|.|. |. .|.++.-|.+ +.-....++.+.+.
T Consensus 8 ~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~~~~~~~~~~lrl~v~ 87 (91)
T cd06398 8 GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQYFCSGSRLNPLRIDVT 87 (91)
T ss_pred CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHHHhccCCCceEEEEEE
Confidence 3456666666 47899999999999999998 66677773 33 3333332222 33345777877765
Q ss_pred c
Q 012749 453 L 453 (457)
Q Consensus 453 l 453 (457)
+
T Consensus 88 ~ 88 (91)
T cd06398 88 V 88 (91)
T ss_pred E
Confidence 4
No 284
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=35.39 E-value=1.6e+02 Score=20.86 Aligned_cols=59 Identities=15% Similarity=0.313 Sum_probs=38.3
Q ss_pred CCceEEEeecCCchHHHHHHHHhhhhCCCCCceEEEECCeecccCccccccCcCcCcEEEEEEEec
Q 012749 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (457)
Q Consensus 161 ~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~I~~~~~i~l~~~~~ 226 (457)
+|+.+. ++...||.+|.+.+ +++++...+..+|+.... ....++-+++|+.|.++.-..
T Consensus 4 Ng~~~~--~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~-~~~~~~~L~~gD~veii~~V~ 62 (64)
T TIGR01683 4 NGEPVE--VEDGLTLAALLESL----GLDPRRVAVAVNGEIVPR-SEWDDTILKEGDRIEIVTFVG 62 (64)
T ss_pred CCeEEE--cCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCH-HHcCceecCCCCEEEEEEecc
Confidence 444443 45667899888755 566666667788877632 223446789999998775443
No 285
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=34.91 E-value=50 Score=24.30 Aligned_cols=43 Identities=21% Similarity=0.311 Sum_probs=32.0
Q ss_pred chHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEE
Q 012749 401 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 449 (457)
Q Consensus 401 ~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l 449 (457)
.|+++|....++++|++ ..-.+.-+|-+++|=.. |.+|+.+++
T Consensus 26 ~SleeLl~ia~~kfg~~-~~~v~~~dgaeIdDI~~-----IRDgD~L~~ 68 (69)
T PF11834_consen 26 DSLEELLKIASEKFGFS-ATKVLNEDGAEIDDIDV-----IRDGDHLYL 68 (69)
T ss_pred ccHHHHHHHHHHHhCCC-ceEEEcCCCCEEeEEEE-----EEcCCEEEE
Confidence 79999999999999997 44556666777766443 445777775
No 286
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=34.86 E-value=61 Score=26.13 Aligned_cols=40 Identities=8% Similarity=0.216 Sum_probs=33.5
Q ss_pred cEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEc
Q 012749 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 50 (457)
Q Consensus 11 ~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L 50 (457)
|.-.+.|++++|+..+-..+++..+++.+.|-..|-....
T Consensus 45 K~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sF 84 (116)
T KOG3439|consen 45 KKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSF 84 (116)
T ss_pred ecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCcc
Confidence 4456789999999999999999999999998777755444
No 287
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=34.82 E-value=1.1e+02 Score=23.91 Aligned_cols=40 Identities=13% Similarity=0.295 Sum_probs=30.0
Q ss_pred cCCceEEEEeec-----CccHHHHHHHHhhhcCCCC-CCeEEEeCC
Q 012749 236 LTGKTITLEVES-----SDTIDNVKAKIQDKEGIPP-DQQRLIFAG 275 (457)
Q Consensus 236 ~~g~~~~~~v~~-----~~tV~~lK~~I~~~~~ip~-~~q~L~~~g 275 (457)
.+|...++.+.. +-+...|+++|.+.+++|+ ....|.|..
T Consensus 7 y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~D 52 (91)
T cd06398 7 YGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTD 52 (91)
T ss_pred eCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEEC
Confidence 355566666664 5799999999999999988 456666644
No 288
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=33.96 E-value=52 Score=24.56 Aligned_cols=34 Identities=21% Similarity=0.371 Sum_probs=27.8
Q ss_pred chHHHHHHHHhhhcCCCCCCeEE--EEcCeecCCCC
Q 012749 401 DTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGR 434 (457)
Q Consensus 401 ~tV~~lK~~i~~~~~ip~~~q~l--~~~g~~L~d~~ 434 (457)
.+.++|+.+.+++.++|...-+| .-+|..++|+.
T Consensus 19 ~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEe 54 (74)
T smart00266 19 SSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEE 54 (74)
T ss_pred CCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHH
Confidence 58999999999999999655554 44899998775
No 289
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=33.20 E-value=21 Score=35.39 Aligned_cols=50 Identities=34% Similarity=0.564 Sum_probs=43.2
Q ss_pred ccCCcEEEEEEc-CCCCHHHHHHHHhhhhCCCCCCcEEEecCcccCCCCcc
Q 012749 83 TLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132 (457)
Q Consensus 83 ~~~g~~~~l~v~-~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl 132 (457)
..+|....+.+. .++.+..+|+++.+..++++..|.+.+.|..|.|+..+
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeeccCCcccCccccc
Confidence 456777777777 67789999999999999999999999999999887443
No 290
>PRK08453 fliD flagellar capping protein; Validated
Probab=32.80 E-value=1.3e+02 Score=32.81 Aligned_cols=86 Identities=17% Similarity=0.272 Sum_probs=55.5
Q ss_pred ccCCceEEEEeecCccHHHHHHHHhhh-----------cCCCCCCeEEEeCCcccCCCccc------cccccCCCCeEEE
Q 012749 235 TLTGKTITLEVESSDTIDNVKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTL------ADYNIQKESTLHL 297 (457)
Q Consensus 235 ~~~g~~~~~~v~~~~tV~~lK~~I~~~-----------~~ip~~~q~L~~~g~~L~d~~tl------~~~~i~~~~tl~l 297 (457)
...|++++++|.+..|+++|+.+|-+. .| ..+-|+|+..+...-.+..+ ..-.+..|.--.+
T Consensus 134 ~~~G~~~sIdi~~gtTL~~L~~~INd~~n~~V~Asiv~tG-~~~~y~L~l~s~etGa~n~I~~~~~~~~~~~~~~~~~~~ 212 (673)
T PRK08453 134 YTQGKDYAIDIKAGMTLGDVAQSITDATNGEVMGIVMKTG-GNDPYQLMINSKNTGEDNRIYFGSTLQSTLTNKNALSLV 212 (673)
T ss_pred EECCEEEEEEeCCCCcHHHHHHHhcCCCCCCeEEEEEecC-CCccEEEEEeccCcCCCceEEEeccccccccCCcccccc
Confidence 345999999999999999999999842 23 22348888887766554433 3333433331101
Q ss_pred EEeecCceeeEEEecCCcEEEEEe
Q 012749 298 VLRLRGGMQIFVKTLTGKTITLEV 321 (457)
Q Consensus 298 ~~~~~~~~~i~i~~~~g~~~~l~v 321 (457)
-.--.+...|++|..+|+.+++.+
T Consensus 213 ~~~~~~~~~~~~~~~~g~~~~~~~ 236 (673)
T PRK08453 213 DGSGKGDLSLNLKDADGNMHTVPI 236 (673)
T ss_pred cccccccceeeeeccCCccccccc
Confidence 112245567888888998776555
No 291
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=32.49 E-value=48 Score=27.37 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=35.5
Q ss_pred EEEEEEcCCCCHHHHHHHHhhhhCCCCCCcEEEecCcccCCCCccccc
Q 012749 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135 (457)
Q Consensus 88 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y 135 (457)
..-+-|+.+.||+++..-|+.+.++++++--|+.++..+....++++.
T Consensus 42 ~KfllVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~l 89 (121)
T PTZ00380 42 VHFLALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGDI 89 (121)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHHH
Confidence 333468999999999999999999999883333455555666677663
No 292
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=32.42 E-value=75 Score=24.82 Aligned_cols=39 Identities=21% Similarity=0.270 Sum_probs=32.7
Q ss_pred CCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEE-EEcCe
Q 012749 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL-IFAGK 428 (457)
Q Consensus 390 g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l-~~~g~ 428 (457)
...+++.|++..|=.|+|..|+..+|+++..-+- ...|+
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk 59 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGK 59 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCc
Confidence 4689999999999999999999999999987753 34443
No 293
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=32.32 E-value=93 Score=23.53 Aligned_cols=49 Identities=20% Similarity=0.424 Sum_probs=34.5
Q ss_pred ccHHHHHHHhhcccCCCCCCceEE--ecCeeccCCCcccccccccCceEEEEEE
Q 012749 325 DTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHLVLR 376 (457)
Q Consensus 325 ~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 376 (457)
.+.+||+.+..++++++.+.-+|+ -.|.+++|+.-+..+ +.+|..+...
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~tL---p~nT~lm~L~ 71 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQTL---PDNTVLMLLE 71 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCCS---SSSEEEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhhC---CCCCEEEEEC
Confidence 689999999999999997655666 478888877655554 4445544443
No 294
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=32.29 E-value=83 Score=23.79 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=23.9
Q ss_pred EEEEeecCccHHHHHHHHhhhcC--------CCCCCeEEEe
Q 012749 241 ITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIF 273 (457)
Q Consensus 241 ~~~~v~~~~tV~~lK~~I~~~~~--------ip~~~q~L~~ 273 (457)
+.+.+..+.|+.++|+.+.+... -.++.|.|.+
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A~~~PL~~~L~~~~~Y~F~~ 42 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEAKKYPLFSLLKDPSSYIFSC 42 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHGGGSTTCCCS--GGGEEEEE
T ss_pred eEEEccCcCcHHHHHHHHHHHHHhCChHHHhCCCCcEEEEE
Confidence 57899999999999999887643 2566666665
No 295
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=32.07 E-value=1.8e+02 Score=23.07 Aligned_cols=70 Identities=23% Similarity=0.395 Sum_probs=41.8
Q ss_pred eEEEEcc-CCceEEEEeecCccHHHHHHHHhhh--cCCC----CCCeEEEeCCcc--cCCCccccccc-----cCCCCeE
Q 012749 230 QIFVKTL-TGKTITLEVESSDTIDNVKAKIQDK--EGIP----PDQQRLIFAGKQ--LEDGRTLADYN-----IQKESTL 295 (457)
Q Consensus 230 ~i~V~~~-~g~~~~~~v~~~~tV~~lK~~I~~~--~~ip----~~~q~L~~~g~~--L~d~~tl~~~~-----i~~~~tl 295 (457)
.|.|... .+..+++.++.++|+.+|.+++-.+ .++. .+++.|.-.|+. |..+..|.+|. ++.+-.+
T Consensus 18 ~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~~~ 97 (106)
T PF00794_consen 18 KVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGKDP 97 (106)
T ss_dssp EEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT--E
T ss_pred EEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCCCc
Confidence 3444444 5678999999999999998887665 1221 225777777754 55667776664 4455555
Q ss_pred EEEE
Q 012749 296 HLVL 299 (457)
Q Consensus 296 ~l~~ 299 (457)
+|..
T Consensus 98 ~L~L 101 (106)
T PF00794_consen 98 HLVL 101 (106)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5543
No 296
>PRK15078 polysaccharide export protein Wza; Provisional
Probab=31.50 E-value=5.5e+02 Score=25.80 Aligned_cols=141 Identities=11% Similarity=0.088 Sum_probs=79.2
Q ss_pred cccccCCCCeEEEEEeecCceee------------EEEecCCcEEEEEe-----ecCccHHHHHHHhhcccCCCCCCceE
Q 012749 285 ADYNIQKESTLHLVLRLRGGMQI------------FVKTLTGKTITLEV-----ESSDTIDNVKAKIQDKEGIPPDQQRL 347 (457)
Q Consensus 285 ~~~~i~~~~tl~l~~~~~~~~~i------------~i~~~~g~~~~l~v-----~~~~Tv~~lK~~I~~~~~ip~~~q~l 347 (457)
.+|-|..||.|.+...-++.... +....+|. +.+.. -.+.|++++++.|..++.
T Consensus 83 ~~Y~igpGDvL~I~V~~~peL~~~~~~~~~~~~~g~~V~~dG~-I~~P~vG~V~vaG~T~~e~~~~I~~~L~-------- 153 (379)
T PRK15078 83 YEYRVGPGDVLNVTVWDHPELTTPAGQYRSASDTGNWVHADGT-IFYPYIGKVHVAGKTVTEIRSDITGRLA-------- 153 (379)
T ss_pred CCcEECCCCEEEEEEecCcccccccccccccccCCCEECCCCe-EeeccCceEEECCCCHHHHHHHHHHHHH--------
Confidence 46889999998876654444321 01233443 33222 258899999999998732
Q ss_pred EecCeeccCCCcccccccccCceEEEEEEecCceeeEEEeCCCCEEEEEecC-CchHHHHHHHHhhhcCC-CCCCeEEEE
Q 012749 348 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES-SDTIDNVKAKIQDKEGI-PPDQQRLIF 425 (457)
Q Consensus 348 ~~~g~~L~d~~~L~~~~i~~~~~l~l~~~~~~~~~i~v~~~~g~~~~l~v~~-~~tV~~lK~~i~~~~~i-p~~~q~l~~ 425 (457)
.|-..+ .+.+......+.+|+|...-.+.=.+.+.+ ..|+.++-.+.-....- ......|.-
T Consensus 154 --------------~~~~~P--qV~V~v~~~~s~~V~V~GeV~~PG~~~l~~~~~tlldaIa~AGG~~~~a~~~~V~l~R 217 (379)
T PRK15078 154 --------------KYIESP--QVDVNIAAFRSQKAYVTGEVNKSGQQAITNVPLTILDAINAAGGLTDDADWRNVVLTH 217 (379)
T ss_pred --------------HhccCC--eEEEEEccCCceEEEEEceecCCeEEEecCCCccHHHHHHHccCCCcccccceEEEEE
Confidence 221122 233333334566788875544444566654 56877765544332211 123456667
Q ss_pred cCeecC--------CCCcccccCCCCCCEEEEE
Q 012749 426 AGKQLE--------DGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 426 ~g~~L~--------d~~tL~~~~i~~~~~i~l~ 450 (457)
+|+... +...-.+.-+++||.|++-
T Consensus 218 ~g~~~~i~l~~ll~~g~~~~ni~L~~GDvI~Vp 250 (379)
T PRK15078 218 NGKEERISLQALMQNGDLSQNRLLYPGDILYVP 250 (379)
T ss_pred CCeEEEEEHHHHHhcCCcccCceeCCCCEEEEC
Confidence 777532 2333345558899999874
No 297
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=31.17 E-value=24 Score=34.89 Aligned_cols=51 Identities=35% Similarity=0.569 Sum_probs=44.2
Q ss_pred eCCCCEEEEEec-CCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCccc
Q 012749 387 TLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 437 (457)
Q Consensus 387 ~~~g~~~~l~v~-~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~ 437 (457)
..+|....+.+. .+..+..+|.++....+|++..|.+.+.|..|.|+.+++
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~~ 340 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSLA 340 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeeccCCcccCcccccc
Confidence 567777777777 778999999999999999999999999999999885554
No 298
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=30.95 E-value=83 Score=24.29 Aligned_cols=59 Identities=7% Similarity=0.089 Sum_probs=40.0
Q ss_pred EEEEecCCchHHHHHHHHhhhcCCCCCCeE-EEEcCe-ecCCCCc---ccccCCCCCCEEEEEEe
Q 012749 393 ITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGK-QLEDGRT---LADYNIQKESTLHLVLR 452 (457)
Q Consensus 393 ~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~-l~~~g~-~L~d~~t---L~~~~i~~~~~i~l~~r 452 (457)
..+.|+.+.|++++...|..+.++++++-. |+.+.. ....+.+ |.++- .++.-+++...
T Consensus 18 ~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~-~~dGfLyi~Ys 81 (87)
T cd01612 18 KVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCF-GTNGELIVSYC 81 (87)
T ss_pred cEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhc-CCCCEEEEEEe
Confidence 345699999999999999999999887744 444554 2233344 44444 55666776653
No 299
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=30.87 E-value=99 Score=21.81 Aligned_cols=58 Identities=14% Similarity=0.126 Sum_probs=36.3
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceE
Q 012749 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 69 (457)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l 69 (457)
|.|.+++|+... ++...|+.++...|....+-..- .-..+|+..+- +|.+.+++++.+
T Consensus 1 I~v~lpdG~~~~--~~~g~T~~d~A~~I~~~l~~~~~--~A~Vng~~vdl-----~~~L~~~d~v~i 58 (60)
T PF02824_consen 1 IRVYLPDGSIKE--LPEGSTVLDVAYSIHSSLAKRAV--AAKVNGQLVDL-----DHPLEDGDVVEI 58 (60)
T ss_dssp EEEEETTSCEEE--EETTBBHHHHHHHHSHHHHHCEE--EEEETTEEEET-----TSBB-SSEEEEE
T ss_pred CEEECCCCCeee--CCCCCCHHHHHHHHCHHHHhhee--EEEEcCEECCC-----CCCcCCCCEEEE
Confidence 567779998876 77788899999999876542221 12356655544 344445555443
No 300
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=30.27 E-value=67 Score=35.00 Aligned_cols=53 Identities=21% Similarity=0.411 Sum_probs=44.9
Q ss_pred CCcEEEEEecC-CCcHHHHHHHHhhhhCCCCccceEeecc-EEccCCCccccccc
Q 012749 9 TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAG-KQLEDGRTLADYNI 61 (457)
Q Consensus 9 ~g~~~~~~v~~-~dtv~~ik~ki~~~~gip~~~q~l~~~g-~~L~~~~tl~~y~I 61 (457)
.|.+++++... ..|+.++|..|+++.|+....|.++-+| ...+.++.+..|.-
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~St 57 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEIST 57 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhcc
Confidence 48888888887 5899999999999999999999988865 45667889999874
No 301
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=30.08 E-value=2.2e+02 Score=24.46 Aligned_cols=106 Identities=24% Similarity=0.394 Sum_probs=68.5
Q ss_pred EeecCccHHHHHHHhhcccCCCCCCceEEecCeeccCCCcccccccccCc----eEEEEEEe-cCceeeEEEeCCCCEEE
Q 012749 320 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES----TLHLVLRL-RGGMQIFVKTLTGKTIT 394 (457)
Q Consensus 320 ~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~L~~~~i~~~~----~l~l~~~~-~~~~~i~v~~~~g~~~~ 394 (457)
.+-.-.|.+.|-..|.+..|| .+.+.+|..|.... .||...|. .-+-.... ...+.+.|+. | .+.
T Consensus 9 R~L~peTtEklLN~l~~i~GI----~R~vi~Gp~LPk~V---pyGPa~G~pv~h~~Rk~I~V~g~~veL~V~v--G-ri~ 78 (153)
T PF02505_consen 9 RLLKPETTEKLLNELYSIEGI----RRVVIHGPRLPKTV---PYGPARGTPVNHPDRKVINVGGEEVELTVKV--G-RII 78 (153)
T ss_pred hcCCHHHHHHHHHHHhccCCE----EEEEEECCCCCCCC---CCCCCCCCcCCCCcceEEEECCEEEEEEEEE--e-EEE
Confidence 344567888888888887664 46677888786555 45554333 22222221 3456666654 4 377
Q ss_pred EEecC-CchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCccccc
Q 012749 395 LEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439 (457)
Q Consensus 395 l~v~~-~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~ 439 (457)
+++.. .+.+.++++...+.+..+-+ +..|+.+....|+.||
T Consensus 79 lele~~~~~ie~I~~iCee~lpf~y~----i~~G~f~r~~~TvtDY 120 (153)
T PF02505_consen 79 LELEDEEDVIEKIREICEEVLPFGYD----IKEGKFIRTKPTVTDY 120 (153)
T ss_pred EEecCcHHHHHHHHHHHHHhCCCceE----eeeeEEeccCCchhhh
Confidence 88888 78888888887776532222 2369999999999988
No 302
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=29.75 E-value=64 Score=24.38 Aligned_cols=34 Identities=18% Similarity=0.392 Sum_probs=27.5
Q ss_pred chHHHHHHHHhhhcCCCCCCeEEE--EcCeecCCCC
Q 012749 401 DTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGR 434 (457)
Q Consensus 401 ~tV~~lK~~i~~~~~ip~~~q~l~--~~g~~L~d~~ 434 (457)
.+..+|+.+.+++.++|...-+++ -+|.+++|+.
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEe 56 (78)
T cd01615 21 SSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEE 56 (78)
T ss_pred CCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHH
Confidence 589999999999999965555544 4899998775
No 303
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=29.23 E-value=89 Score=23.55 Aligned_cols=33 Identities=12% Similarity=0.214 Sum_probs=30.2
Q ss_pred CEEEEEecCCchHHHHHHHHhhhcCCCCCCeEE
Q 012749 391 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 423 (457)
Q Consensus 391 ~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l 423 (457)
+.+++.|++..|=.++|..|+..+++.+...+-
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt 47 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNT 47 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEe
Confidence 589999999999999999999999999887754
No 304
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=29.02 E-value=2.2e+02 Score=22.78 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=30.0
Q ss_pred EEEeecCccHHHHHHHHhhhcCCCCCCeEEEe-CCcccCCCcccc
Q 012749 242 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLA 285 (457)
Q Consensus 242 ~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~-~g~~L~d~~tl~ 285 (457)
.+-|..+.||+++...|..+..+++++-.++| ++.....+.++.
T Consensus 36 KfLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~ 80 (104)
T PF02991_consen 36 KFLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMG 80 (104)
T ss_dssp EEEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHH
T ss_pred EEEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHH
Confidence 34578899999999999999999998744444 554445555553
No 305
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=28.80 E-value=62 Score=25.20 Aligned_cols=39 Identities=23% Similarity=0.408 Sum_probs=33.1
Q ss_pred CEEEEEecCCchHHHHHHHHhhhcCCCCCCeE-EEEcCee
Q 012749 391 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQ 429 (457)
Q Consensus 391 ~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~-l~~~g~~ 429 (457)
..+++.|+++.|=.|+|..|+..+|+++..-+ +.+.|+.
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~ 60 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKK 60 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCc
Confidence 57999999999999999999999999997765 3455553
No 306
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=28.54 E-value=3.8e+02 Score=23.08 Aligned_cols=110 Identities=23% Similarity=0.383 Sum_probs=69.6
Q ss_pred EEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccc----cceEEEeec-CceEEEEEccCCc
Q 012749 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES----TLHLVLRLR-GGMQIFVKTLTGK 87 (457)
Q Consensus 13 ~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~s----ti~l~~~~~-~~~~i~vk~~~g~ 87 (457)
|+-+.-.-+|.+.+=.+|.+-.|| .+.+.+|..|... --|+...+. .-+-++... ..+.+.|+. |
T Consensus 6 fP~R~L~peTtEklLN~l~~i~GI----~R~vi~Gp~LPk~---VpyGPa~G~pv~h~~Rk~I~V~g~~veL~V~v--G- 75 (153)
T PF02505_consen 6 FPHRLLKPETTEKLLNELYSIEGI----RRVVIHGPRLPKT---VPYGPARGTPVNHPDRKVINVGGEEVELTVKV--G- 75 (153)
T ss_pred echhcCCHHHHHHHHHHHhccCCE----EEEEEECCCCCCC---CCCCCCCCCcCCCCcceEEEECCEEEEEEEEE--e-
Confidence 444556678999999999887776 5788889888642 235444333 233333333 245555542 2
Q ss_pred EEEEEEcC-CCCHHHHHHHHhhhhCCCCCCcEEEecCcccCCCCcccccc
Q 012749 88 TITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136 (457)
Q Consensus 88 ~~~l~v~~-~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~ 136 (457)
.+.++++. .+.+..+++...+...++-+ +..|+-+....|++||-
T Consensus 76 ri~lele~~~~~ie~I~~iCee~lpf~y~----i~~G~f~r~~~TvtDY~ 121 (153)
T PF02505_consen 76 RIILELEDEEDVIEKIREICEEVLPFGYD----IKEGKFIRTKPTVTDYA 121 (153)
T ss_pred EEEEEecCcHHHHHHHHHHHHHhCCCceE----eeeeEEeccCCchhhhh
Confidence 46677777 66677776666554433222 23588999999999983
No 307
>TIGR00038 efp translation elongation factor P. function: involved in peptide bond synthesis. stimulate efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase (by similarity). The trusted cutoff of this model is set high enough to exclude members of TIGR02178, an EFP-like protein of certain Gammaproteobacteria.
Probab=28.29 E-value=69 Score=28.62 Aligned_cols=86 Identities=21% Similarity=0.274 Sum_probs=48.2
Q ss_pred EEEEc-CCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeecc--EEccCCCccccccccccccceEEEeecCceEE
Q 012749 3 IFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 79 (457)
Q Consensus 3 i~~~~-~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g--~~L~~~~tl~~y~I~~~sti~l~~~~~~~~~i 79 (457)
+-+++ .+|+.+.-..+.++.++.. .--..+.|.++.+| ..+-|..+.++|.+..+.--.-..-+.++|.+
T Consensus 38 vk~knL~tG~~~e~~f~~~~kve~~-------~~e~~~~q~ly~dgd~~~fMD~etyeq~~i~~~~l~~~~~~L~eg~~v 110 (184)
T TIGR00038 38 VKLKNLLTGKVLEKTFRSGEKVEKA-------DVEEREMQYLYKDGDSYVFMDTETYEQIELPKDLLGDAAKFLKENMEV 110 (184)
T ss_pred EEEEECCCCCEEEEEeCCCCEEEcc-------cEEeEEEEEEEECCCEEEEeCCCCccceEcCHHHHHHHHhhcCCCCEE
Confidence 44444 5677777777777743332 11123456777766 33445557777766543211112224567788
Q ss_pred EEEccCCcEEEEEEcC
Q 012749 80 FVKTLTGKTITLEVES 95 (457)
Q Consensus 80 ~vk~~~g~~~~l~v~~ 95 (457)
.|...+|+.+.++++.
T Consensus 111 ~v~~~~~~~i~v~lP~ 126 (184)
T TIGR00038 111 SVTFYNGEPIGVELPN 126 (184)
T ss_pred EEEEECCEEEEEECCC
Confidence 8888888877766654
No 308
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=27.79 E-value=77 Score=23.94 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=27.6
Q ss_pred chHHHHHHHHhhhcCCCCCCeE--EEEcCeecCCCC
Q 012749 401 DTIDNVKAKIQDKEGIPPDQQR--LIFAGKQLEDGR 434 (457)
Q Consensus 401 ~tV~~lK~~i~~~~~ip~~~q~--l~~~g~~L~d~~ 434 (457)
.+.+||+.+.++..+++...-+ |.-+|..++++.
T Consensus 21 ~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~Ee 56 (78)
T cd06539 21 SSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEE 56 (78)
T ss_pred cCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHH
Confidence 5899999999999999865444 456899998775
No 309
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=27.75 E-value=2e+02 Score=21.44 Aligned_cols=61 Identities=16% Similarity=0.360 Sum_probs=37.8
Q ss_pred CEEEEEecCCchHHHHHHHHhhhcC-CCCCCeEEEE------cCeecCCCCcccccCCCCCCEEEEEEe
Q 012749 391 KTITLEVESSDTIDNVKAKIQDKEG-IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 391 ~~~~l~v~~~~tV~~lK~~i~~~~~-ip~~~q~l~~------~g~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
+.+.+-.+|+.|+.+|+..|.+++. +-|+...+.- +|--|+.+.+.++. ...+++|.+.++
T Consensus 3 kKFLhlt~~~~tl~~L~~eI~~~f~kLYP~~~~~~I~~LQD~~~cDLD~d~~V~DV-f~~~~~vrvi~~ 70 (73)
T PF10407_consen 3 KKFLHLTDPNNTLSQLKEEIEERFKKLYPNEPELEILSLQDSDGCDLDPDFLVKDV-FNSNNVVRVILK 70 (73)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHHCCCCCCceEEEeecCCCCCCCcccEeeee-eccCCEEEEEec
Confidence 4566778999999999999999873 3444432221 23234444444444 236777776654
No 310
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=26.98 E-value=1.5e+02 Score=29.99 Aligned_cols=78 Identities=14% Similarity=0.279 Sum_probs=63.1
Q ss_pred cceeeeeeecCCceEEEeecCCchHHHHHHHHhhhhCCCCCceEE--EECCeeccc---CccccccCcCcCcEEEEEEEe
Q 012749 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLED---GRTLADYNIQKESTLHLVLRL 225 (457)
Q Consensus 151 ~~~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L--~~~g~~L~d---~~tL~~y~I~~~~~i~l~~~~ 225 (457)
....+.|+.++|.+++-..+.++-...++..+.+.-++....+.| .|-.|+..+ .++|.+..+.+...+.++.+.
T Consensus 313 d~~rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~~~i~~g~f~LatpyPRReft~eDy~KtllEl~L~psaalvvlpk~ 392 (506)
T KOG2507|consen 313 DDVRLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQNQTIGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSAALVVLPKK 392 (506)
T ss_pred ceeEEEEecCCccchhhcCCcchHHHHHHHHHHhcccccccceeeccccccccccchhhhhhHHHhccCCcceEEEEecC
Confidence 457788889999999989999999999999999888877777766 366777643 479999999999998887776
Q ss_pred cCC
Q 012749 226 RGG 228 (457)
Q Consensus 226 ~~~ 228 (457)
+..
T Consensus 393 r~t 395 (506)
T KOG2507|consen 393 RAT 395 (506)
T ss_pred Ccc
Confidence 543
No 311
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=26.58 E-value=81 Score=24.65 Aligned_cols=39 Identities=23% Similarity=0.315 Sum_probs=32.4
Q ss_pred CcEEEEEeecCccHHHHHHHhhcccCCCCCCce-EEecCe
Q 012749 314 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGK 352 (457)
Q Consensus 314 g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~-l~~~g~ 352 (457)
.+++++.|++.+|=.|+|+.|+..+++++..-+ +...|.
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk 59 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGK 59 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCc
Confidence 578999999999999999999999999997533 334444
No 312
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=26.10 E-value=2.2e+02 Score=22.47 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=31.5
Q ss_pred EEccCCceEEEEeecCccHHHHHHHHhhhcCCCC-CCeEEE
Q 012749 233 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLI 272 (457)
Q Consensus 233 V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~-~~q~L~ 272 (457)
|--.++...++.+..+.||++|-.++..++.++. ..++|.
T Consensus 7 IFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~ 47 (97)
T cd01775 7 VFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLS 47 (97)
T ss_pred EEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEE
Confidence 4445666678899999999999999999999876 445554
No 313
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=26.09 E-value=1e+02 Score=23.29 Aligned_cols=49 Identities=16% Similarity=0.375 Sum_probs=34.0
Q ss_pred CccHHHHHHHhhcccCCCCCCceEE--ecCeeccCCCcccccccccCceEEEEE
Q 012749 324 SDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHLVL 375 (457)
Q Consensus 324 ~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L~d~~~L~~~~i~~~~~l~l~~ 375 (457)
..+.++|+.+..+++++|...-+++ -.|.+++|+.-+..+ +.+|..+..
T Consensus 20 A~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEeYF~tL---p~nT~l~~l 70 (78)
T cd01615 20 ASSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEYFQTL---PDNTVLMLL 70 (78)
T ss_pred cCCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHHHHhcC---CCCcEEEEE
Confidence 3588999999999999975444444 678888887755554 344444443
No 314
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=25.68 E-value=1.5e+02 Score=29.15 Aligned_cols=63 Identities=19% Similarity=0.241 Sum_probs=48.8
Q ss_pred EEEEecCCchHHHHHHHHhhhc--------------C-CCCCCeEEEEcCeecCCCCcccccC---CCCCCEEEEEEecC
Q 012749 393 ITLEVESSDTIDNVKAKIQDKE--------------G-IPPDQQRLIFAGKQLEDGRTLADYN---IQKESTLHLVLRLR 454 (457)
Q Consensus 393 ~~l~v~~~~tV~~lK~~i~~~~--------------~-ip~~~q~l~~~g~~L~d~~tL~~~~---i~~~~~i~l~~rl~ 454 (457)
..|..+..-.|.-++..|.++. . -|.+...|+|+|+.|.++.||+... .+.+.-|.|..|..
T Consensus 250 ~rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~YR~k 329 (331)
T PF11816_consen 250 SRLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHYRRK 329 (331)
T ss_pred ceecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEEEec
Confidence 4466667778888888888887 2 5667778999999999998877543 56777888888876
Q ss_pred C
Q 012749 455 G 455 (457)
Q Consensus 455 G 455 (457)
|
T Consensus 330 ~ 330 (331)
T PF11816_consen 330 G 330 (331)
T ss_pred C
Confidence 5
No 315
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=25.06 E-value=1e+02 Score=23.53 Aligned_cols=34 Identities=24% Similarity=0.234 Sum_probs=28.3
Q ss_pred eEEEEeecCccHHHHHHHHhhhcCC-CCCCeEEEe
Q 012749 240 TITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIF 273 (457)
Q Consensus 240 ~~~~~v~~~~tV~~lK~~I~~~~~i-p~~~q~L~~ 273 (457)
.-++.|.++.|.++|=+++..++++ .|+.+.|.+
T Consensus 15 ~KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl 49 (87)
T cd01776 15 GKTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFL 49 (87)
T ss_pred eeeeecCCCCcHHHHHHHHHHHhccCChhheeEEE
Confidence 3468899999999999999999998 677777654
No 316
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=24.78 E-value=91 Score=23.49 Aligned_cols=31 Identities=13% Similarity=0.246 Sum_probs=28.5
Q ss_pred CcEEEEEeecCccHHHHHHHhhcccCCCCCC
Q 012749 314 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 344 (457)
Q Consensus 314 g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~ 344 (457)
.+++++.|++.+|=.++|+.|+..+++.+..
T Consensus 14 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~ 44 (77)
T TIGR03636 14 ENKLTFIVDRKATKGDIKRAVEKLFDVKVEK 44 (77)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEE
Confidence 4689999999999999999999999998874
No 317
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=23.97 E-value=1.1e+02 Score=32.88 Aligned_cols=58 Identities=17% Similarity=0.287 Sum_probs=44.8
Q ss_pred EEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEE----cCeecC--CCCcccccCCCCCCEEEEEE
Q 012749 392 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF----AGKQLE--DGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~----~g~~L~--d~~tL~~~~i~~~~~i~l~~ 451 (457)
.+.+.|+..+++..+|+.|+...++|.+++++.- +|..+. ++.||.. .-++++|.+.+
T Consensus 878 ~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~--~~~~~~iTI~L 941 (1203)
T KOG4598|consen 878 FHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSG--AFQSCFITIKL 941 (1203)
T ss_pred heeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhh--hcccceEEEEe
Confidence 4678899999999999999999999999999874 444443 5567765 34567766554
No 318
>KOG3784 consensus Sorting nexin protein SNX27 [General function prediction only; Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.93 E-value=1.3e+02 Score=30.01 Aligned_cols=44 Identities=30% Similarity=0.431 Sum_probs=36.1
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEc
Q 012749 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 50 (457)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L 50 (457)
|++ ++|..+++++..|||-+.+-+-+..+.|.| .+.+.|-|-.|
T Consensus 112 v~l--png~~i~i~~~~s~tt~~vl~~v~~kl~l~--~e~i~~f~lFl 155 (407)
T KOG3784|consen 112 VFL--PNGEKITINCLVSDTASLVLKSVCRKLGLP--DELIGYFGLFL 155 (407)
T ss_pred EEc--cCCceEEEEEEecccHHHHHHHHHhhcCCc--hHhhhheeeeE
Confidence 444 999999999999999999999999999999 34454545544
No 319
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=23.54 E-value=1.3e+02 Score=23.05 Aligned_cols=34 Identities=12% Similarity=0.211 Sum_probs=30.6
Q ss_pred CCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEE
Q 012749 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 423 (457)
Q Consensus 390 g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l 423 (457)
.+.+++.|++..+=.++|..|+..+|+++..-+-
T Consensus 21 ~n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT 54 (84)
T PRK14548 21 ENKLTFIVDRRATKPDIKRAVEELFDVKVEKVNT 54 (84)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEe
Confidence 3589999999999999999999999999887754
No 320
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=23.29 E-value=93 Score=23.64 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=27.1
Q ss_pred chHHHHHHHHhhhcCCCC----CCeEEEEcCeecCCCC
Q 012749 401 DTIDNVKAKIQDKEGIPP----DQQRLIFAGKQLEDGR 434 (457)
Q Consensus 401 ~tV~~lK~~i~~~~~ip~----~~q~l~~~g~~L~d~~ 434 (457)
.+.++|+.+.++..++|. -...|.-+|..++|+.
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~~~~lvL~eDGT~VddEe 58 (80)
T cd06536 21 SSLEELRIKACESLGFDSSSAPITLVLAEDGTIVEDED 58 (80)
T ss_pred CCHHHHHHHHHHHhCCCCCCCceEEEEecCCcEEccHH
Confidence 589999999999999983 3334556899998775
No 321
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=23.14 E-value=3.6e+02 Score=21.80 Aligned_cols=46 Identities=22% Similarity=0.213 Sum_probs=36.3
Q ss_pred CceeeEEEeCCCC--EEEEEecCCchHHHHHHHHhhhcCCC-----CCCeEEE
Q 012749 379 GGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEGIP-----PDQQRLI 424 (457)
Q Consensus 379 ~~~~i~v~~~~g~--~~~l~v~~~~tV~~lK~~i~~~~~ip-----~~~q~l~ 424 (457)
+-|..|.++..++ +-.+.|+.++|+.++.+.+-+++.+. +..+.|+
T Consensus 22 gvmrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d~~~~s~p~FALY 74 (112)
T cd01782 22 GVMRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRPDMRMLSNPTYSLY 74 (112)
T ss_pred eEEEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhcccccccCCcceEEE
Confidence 5588888877765 35788999999999999999999854 4466654
No 322
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=23.13 E-value=1.5e+02 Score=26.82 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=32.2
Q ss_pred cccc-cccccceEEEeecCceEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhh
Q 012749 58 DYNI-QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 110 (457)
Q Consensus 58 ~y~I-~~~sti~l~~~~~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~ 110 (457)
+++. ..++|+|++-.-.++-.|.. .-.+.|.+.||.++|.++|.+.+
T Consensus 126 ~aG~k~sG~TVH~V~e~vD~GpII~------Q~~Vpv~~~Dt~etl~~RV~~~E 173 (200)
T COG0299 126 EAGVKVSGCTVHFVTEGVDTGPIIA------QAAVPVLPGDTAETLEARVLEQE 173 (200)
T ss_pred HcCCCccCcEEEEEccCCCCCCeEE------EEeeeecCCCCHHHHHHHHHHHH
Confidence 3444 47888888775332223332 23678999999999999998765
No 323
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=22.22 E-value=93 Score=23.52 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=17.6
Q ss_pred EEEEeecCccHHHHHHHhhcc
Q 012749 317 ITLEVESSDTIDNVKAKIQDK 337 (457)
Q Consensus 317 ~~l~v~~~~Tv~~lK~~I~~~ 337 (457)
++++++.++|+.++|+.+.+.
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~ 22 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEE 22 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHH
T ss_pred eEEEccCcCcHHHHHHHHHHH
Confidence 568999999999999998765
No 324
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.87 E-value=52 Score=33.36 Aligned_cols=52 Identities=25% Similarity=0.265 Sum_probs=45.5
Q ss_pred EEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCC
Q 012749 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 445 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~ 445 (457)
.++.+..-|=.+|...|+++.||+-.+.+.+-+|+.|.-.+||++-|++..-
T Consensus 53 l~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq 104 (568)
T KOG2561|consen 53 LKKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQ 104 (568)
T ss_pred hhhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhh
Confidence 4556667788899999999999999999999999999999999999987543
No 325
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=21.85 E-value=1.2e+02 Score=22.97 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=33.4
Q ss_pred CccHHHHHHHhhcccCCCCC----CceEEecCeeccCCCcccccccccCceEEEEE
Q 012749 324 SDTIDNVKAKIQDKEGIPPD----QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 375 (457)
Q Consensus 324 ~~Tv~~lK~~I~~~~~ip~~----~q~l~~~g~~L~d~~~L~~~~i~~~~~l~l~~ 375 (457)
..+.++|+.+..+++++|.. .-.|.-.|.+++|+.-+..+ +.+|..+..
T Consensus 20 A~sL~eL~~K~~~~l~l~~~~~~~~lvL~eDGT~VddEeyF~tL---p~nT~l~~L 72 (80)
T cd06536 20 ASSLEELRIKACESLGFDSSSAPITLVLAEDGTIVEDEDYFLCL---PPNTKFVLL 72 (80)
T ss_pred cCCHHHHHHHHHHHhCCCCCCCceEEEEecCCcEEccHHHHhhC---CCCcEEEEE
Confidence 35789999999999999933 23344688888887755554 344444443
No 326
>PF14085 DUF4265: Domain of unknown function (DUF4265)
Probab=21.11 E-value=3.8e+02 Score=21.78 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=38.5
Q ss_pred cCccccccCcCcCcEEEEEEEecCCeeEEEEc---cCCceEEEEeecCcc--HHHHHHHHhh
Q 012749 204 DGRTLADYNIQKESTLHLVLRLRGGMQIFVKT---LTGKTITLEVESSDT--IDNVKAKIQD 260 (457)
Q Consensus 204 d~~tL~~y~I~~~~~i~l~~~~~~~~~i~V~~---~~g~~~~~~v~~~~t--V~~lK~~I~~ 260 (457)
++.++..||+..|+.|...... +...+.+. ....|+++-+.+... ++.+.+.+.+
T Consensus 17 ~n~Pf~a~glA~gDvV~~~~~~--g~~~~~~~v~~sGnsTiRv~~~~~~~~~~~~v~~~l~~ 76 (117)
T PF14085_consen 17 DNIPFFAYGLALGDVVRAEPDD--GELWFQKVVESSGNSTIRVIFDDPGPDDIEAVREELEA 76 (117)
T ss_pred EecccccCCCCCCCEEEEEeCC--CeEEEEEEEecCCCEEEEEEEcCCcchhHHHHHHHHHH
Confidence 4567888999999999876654 55555444 555688888877766 6666666653
No 327
>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism]
Probab=20.95 E-value=1.4e+02 Score=26.67 Aligned_cols=44 Identities=20% Similarity=0.366 Sum_probs=28.2
Q ss_pred cccccceEEEeecCceEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhC
Q 012749 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG 111 (457)
Q Consensus 62 ~~~sti~l~~~~~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~g 111 (457)
..++|+|++..-.+.-++.+ .-.+.|.+.||++++-++++..+-
T Consensus 139 ~~GctvHfV~EevD~G~iI~------q~~v~V~~~Dt~esl~qrv~~aEH 182 (206)
T KOG3076|consen 139 LSGCTVHFVIEEVDTGPIIA------QMAVPVIPGDTLESLEQRVHDAEH 182 (206)
T ss_pred cccceEEEehhhccCCCceE------EEeeeecCCCCHHHHHHHHHHHHH
Confidence 34556666654332222222 135778999999999999987653
No 328
>CHL00030 rpl23 ribosomal protein L23
Probab=20.48 E-value=1.3e+02 Score=23.58 Aligned_cols=34 Identities=21% Similarity=0.132 Sum_probs=30.1
Q ss_pred CCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEE
Q 012749 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 423 (457)
Q Consensus 390 g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l 423 (457)
.+.+++.|+++.|=.++|+.|+..+++.+..-.-
T Consensus 19 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt 52 (93)
T CHL00030 19 KNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNS 52 (93)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEE
Confidence 4589999999999999999999999998877653
No 329
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=20.10 E-value=1.3e+02 Score=22.84 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=26.8
Q ss_pred chHHHHHHHHhhhcCCCC-CCeEEEEcCeecCCCC
Q 012749 401 DTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGR 434 (457)
Q Consensus 401 ~tV~~lK~~i~~~~~ip~-~~q~l~~~g~~L~d~~ 434 (457)
.+.++|+.+.+++.+++. ....|.-+|..++|+.
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~lvL~eDGT~Vd~Ee 55 (79)
T cd06538 21 DSLEDLLNKVLDALLLDCISSLVLDEDGTGVDTEE 55 (79)
T ss_pred CCHHHHHHHHHHHcCCCCccEEEEecCCcEEccHH
Confidence 589999999999999963 2245556899998775
No 330
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=20.07 E-value=4.1e+02 Score=20.32 Aligned_cols=57 Identities=11% Similarity=0.176 Sum_probs=39.3
Q ss_pred CCceEEEeecCCchHHHHHHHHhhhhCCCCCceEEEECCeecccCccccccCcCcCcEEEEEEE
Q 012749 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (457)
Q Consensus 161 ~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~I~~~~~i~l~~~ 224 (457)
+|+.. ++....||.+|-+. .++++...-+-.+|..+. ......+-+++|+.|.++--
T Consensus 24 NG~~~--~~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVp-r~~w~~t~L~egD~IEIv~~ 80 (84)
T PRK06083 24 NDQSI--QVDISSSLAQIIAQ----LSLPELGCVFAINNQVVP-RSEWQSTVLSSGDAISLFQA 80 (84)
T ss_pred CCeEE--EcCCCCcHHHHHHH----cCCCCceEEEEECCEEeC-HHHcCcccCCCCCEEEEEEE
Confidence 46554 44567788877764 477777777778888773 33455667999999987643
Done!