Query 012749
Match_columns 457
No_of_seqs 492 out of 2941
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 15:29:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012749.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012749hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rt3_B Ubiquitin-like protein 100.0 2.9E-35 9.9E-40 258.2 18.6 153 305-457 3-158 (159)
2 3rt3_B Ubiquitin-like protein 100.0 2.2E-35 7.4E-40 259.0 17.0 152 1-152 3-157 (159)
3 3u30_A Ubiquitin, linear DI-ub 100.0 1.5E-34 5E-39 256.9 17.7 155 302-456 18-172 (172)
4 3u30_A Ubiquitin, linear DI-ub 100.0 1E-34 3.5E-39 257.9 15.9 152 1-152 21-172 (172)
5 3b08_A Polyubiquitin-C, ubiqui 100.0 1.2E-32 4.2E-37 239.8 19.1 152 305-456 1-152 (152)
6 3b08_A Polyubiquitin-C, ubiqui 100.0 1E-32 3.4E-37 240.3 17.7 152 1-152 1-152 (152)
7 3phx_B Ubiquitin-like protein 99.8 1.1E-19 3.9E-24 139.2 10.4 77 379-455 3-79 (79)
8 4fbj_B NEDD8; effector-HOST ta 99.8 1.2E-19 4.1E-24 141.9 9.3 77 381-457 1-77 (88)
9 3plu_A Ubiquitin-like modifier 99.8 2.3E-19 7.8E-24 138.1 9.9 79 373-451 14-92 (93)
10 3plu_A Ubiquitin-like modifier 99.8 1.7E-19 5.7E-24 138.8 8.5 70 1-70 22-91 (93)
11 1ndd_A NEDD8, protein (ubiquit 99.8 6.4E-19 2.2E-23 133.9 9.7 76 381-456 1-76 (76)
12 2uyz_B Small ubiquitin-related 99.8 3.7E-19 1.3E-23 136.3 8.4 77 380-456 3-79 (79)
13 3dbh_I NEDD8; cell cycle, acti 99.8 4.4E-19 1.5E-23 138.9 8.9 79 378-456 10-88 (88)
14 4eew_A Large proline-rich prot 99.8 7.6E-19 2.6E-23 137.5 9.6 88 364-452 1-88 (88)
15 4hcn_B Polyubiquitin, ubiquiti 99.8 7.8E-19 2.7E-23 140.2 9.5 79 378-456 20-98 (98)
16 1wh3_A 59 kDa 2'-5'-oligoadeny 99.8 1.4E-18 4.6E-23 135.8 10.2 80 378-457 5-84 (87)
17 1wyw_B Ubiquitin-like protein 99.8 8E-19 2.7E-23 139.7 8.9 79 378-456 19-97 (97)
18 3n3k_B Ubiquitin; hydrolase, p 99.8 9.3E-19 3.2E-23 136.1 8.9 79 379-457 2-80 (85)
19 1sif_A Ubiquitin; hydrophobic 99.8 1.1E-18 3.6E-23 136.5 9.1 79 379-457 8-86 (88)
20 3a9j_A Ubiquitin; protein comp 99.8 1.8E-18 6.2E-23 131.4 10.2 76 381-456 1-76 (76)
21 3phx_B Ubiquitin-like protein 99.8 1.4E-18 4.8E-23 133.1 8.9 75 1-75 5-79 (79)
22 3mtn_B UBA80, ubcep1, ubiquiti 99.8 2.3E-18 7.9E-23 133.8 9.9 79 379-457 2-80 (85)
23 3k9o_B Ubiquitin, UBB+1; E2-25 99.8 2.3E-18 7.8E-23 137.1 10.0 78 380-457 1-78 (96)
24 2kdi_A Ubiquitin, vacuolar pro 99.8 1.6E-19 5.6E-24 147.8 2.7 104 74-177 7-113 (114)
25 2kan_A Uncharacterized protein 99.8 3.2E-18 1.1E-22 135.2 9.6 79 378-457 13-92 (94)
26 2l7r_A Ubiquitin-like protein 99.7 1.9E-18 6.6E-23 136.4 8.2 77 378-456 17-93 (93)
27 2hj8_A Interferon-induced 17 k 99.7 2E-18 7E-23 134.9 8.2 78 379-456 3-80 (88)
28 1wy8_A NP95-like ring finger p 99.7 6E-18 2.1E-22 132.7 10.7 79 379-457 6-86 (89)
29 3vdz_A Ubiquitin-40S ribosomal 99.7 5.1E-18 1.7E-22 138.4 10.2 78 379-456 34-111 (111)
30 1uh6_A Ubiquitin-like 5; beta- 99.7 1.9E-18 6.5E-23 135.9 7.3 70 1-70 29-98 (100)
31 4fbj_B NEDD8; effector-HOST ta 99.7 3.2E-18 1.1E-22 133.7 8.4 77 1-77 1-77 (88)
32 2ojr_A Ubiquitin; lanthide-bin 99.7 4.4E-18 1.5E-22 138.9 9.4 93 364-456 11-111 (111)
33 2lxa_A Ubiquitin-like protein 99.7 2.3E-18 8E-23 133.1 6.9 74 1-74 2-79 (87)
34 2kdi_A Ubiquitin, vacuolar pro 99.7 3.2E-19 1.1E-23 146.1 2.1 104 150-253 7-113 (114)
35 3v6c_B Ubiquitin; structural g 99.7 9.4E-18 3.2E-22 132.1 9.8 77 378-454 15-91 (91)
36 1yx5_B Ubiquitin; proteasome, 99.7 7.8E-18 2.7E-22 134.5 9.2 91 1-91 1-91 (98)
37 2kk8_A Uncharacterized protein 99.7 5.3E-18 1.8E-22 130.9 7.9 73 1-73 11-84 (84)
38 4dwf_A HLA-B-associated transc 99.7 1.4E-17 4.6E-22 130.9 9.9 78 378-456 3-80 (90)
39 4eew_A Large proline-rich prot 99.7 7.8E-18 2.7E-22 131.7 8.1 87 61-148 2-88 (88)
40 4ajy_B Transcription elongatio 99.7 8.4E-18 2.9E-22 135.3 7.8 75 1-75 1-83 (118)
41 1yx5_B Ubiquitin; proteasome, 99.7 2.2E-17 7.5E-22 131.8 10.2 77 381-457 1-77 (98)
42 2fnj_B Transcription elongatio 99.7 8E-18 2.7E-22 136.1 7.4 73 1-73 1-81 (118)
43 2uyz_B Small ubiquitin-related 99.7 9.6E-18 3.3E-22 128.4 7.2 76 1-76 4-79 (79)
44 2kk8_A Uncharacterized protein 99.7 2E-17 6.7E-22 127.7 8.7 74 379-452 9-83 (84)
45 3l0w_B Monoubiquitinated proli 99.7 2.8E-17 9.4E-22 144.1 10.6 77 381-457 1-77 (169)
46 1uh6_A Ubiquitin-like 5; beta- 99.7 1.4E-17 4.9E-22 130.9 7.7 73 379-451 27-99 (100)
47 2faz_A Ubiquitin-like containi 99.7 3.7E-17 1.3E-21 124.8 9.7 75 379-453 1-77 (78)
48 1we6_A Splicing factor, putati 99.7 2.1E-17 7.3E-22 134.9 8.5 79 378-456 25-107 (111)
49 2fnj_B Transcription elongatio 99.7 1.7E-17 5.9E-22 134.2 7.8 75 381-456 1-83 (118)
50 1wyw_B Ubiquitin-like protein 99.7 1.6E-17 5.3E-22 132.2 7.3 76 1-76 22-97 (97)
51 1wgd_A Homocysteine-responsive 99.7 3.2E-17 1.1E-21 129.5 8.4 78 379-456 6-89 (93)
52 1ndd_A NEDD8, protein (ubiquit 99.7 5.1E-17 1.7E-21 123.3 9.1 76 1-76 1-76 (76)
53 3b1l_X E3 ubiquitin-protein li 99.5 1.2E-18 4.1E-23 132.4 0.0 75 381-455 1-75 (76)
54 4dwf_A HLA-B-associated transc 99.7 3.7E-17 1.2E-21 128.4 8.5 74 1-75 6-79 (90)
55 3dbh_I NEDD8; cell cycle, acti 99.7 3.5E-17 1.2E-21 128.0 7.9 76 1-76 13-88 (88)
56 3q3f_A Ribonuclease/ubiquitin 99.7 4.6E-17 1.6E-21 144.0 9.6 81 377-457 102-182 (189)
57 2faz_A Ubiquitin-like containi 99.7 4.2E-17 1.4E-21 124.5 8.1 73 1-73 3-77 (78)
58 4ajy_B Transcription elongatio 99.7 5.4E-17 1.8E-21 130.6 8.7 76 381-456 1-84 (118)
59 3v6c_B Ubiquitin; structural g 99.7 4.9E-17 1.7E-21 127.9 8.2 74 1-74 18-91 (91)
60 1se9_A Ubiquitin family; ubiqu 99.7 4.9E-17 1.7E-21 133.1 8.4 76 1-76 17-106 (126)
61 1sif_A Ubiquitin; hydrophobic 99.7 5.8E-17 2E-21 126.5 8.4 76 1-76 10-85 (88)
62 4hcn_B Polyubiquitin, ubiquiti 99.7 6.3E-17 2.2E-21 129.0 8.5 76 1-76 23-98 (98)
63 2dzi_A Ubiquitin-like protein 99.7 1E-16 3.5E-21 123.2 9.4 77 378-454 5-81 (81)
64 2hj8_A Interferon-induced 17 k 99.7 3.4E-17 1.2E-21 127.9 6.6 76 1-76 5-80 (88)
65 1yqb_A Ubiquilin 3; structural 99.7 1E-16 3.5E-21 128.0 8.9 78 378-456 20-97 (100)
66 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 1.1E-16 3.8E-21 127.3 9.1 79 1-79 2-80 (96)
67 2lxa_A Ubiquitin-like protein 99.7 5.9E-17 2E-21 125.2 7.1 74 380-453 1-78 (87)
68 3n3k_B Ubiquitin; hydrolase, p 99.7 9.2E-17 3.1E-21 124.7 8.1 76 1-76 4-79 (85)
69 1wju_A NEDD8 ultimate buster-1 99.7 9.1E-17 3.1E-21 126.3 8.1 66 390-456 29-94 (100)
70 1wgh_A Ubiquitin-like 3, HCG-1 99.7 9.8E-17 3.4E-21 130.3 8.4 74 1-74 17-100 (116)
71 1v2y_A 3300001G02RIK protein; 99.7 4.9E-17 1.7E-21 129.6 6.4 79 379-457 6-100 (105)
72 1se9_A Ubiquitin family; ubiqu 99.7 1.6E-16 5.5E-21 130.0 9.4 80 377-456 13-106 (126)
73 2kan_A Uncharacterized protein 99.7 9.9E-17 3.4E-21 126.6 7.9 75 1-76 16-91 (94)
74 3a9j_A Ubiquitin; protein comp 99.7 1.8E-16 6.2E-21 120.2 9.1 76 1-76 1-76 (76)
75 1wx8_A Riken cDNA 4931431F19; 99.7 6.5E-17 2.2E-21 128.6 6.9 78 379-457 16-93 (96)
76 3l0w_B Monoubiquitinated proli 99.7 1.2E-16 4.1E-21 140.0 9.2 125 1-128 1-128 (169)
77 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 1.2E-16 4E-21 124.7 8.1 76 1-76 8-83 (87)
78 2wyq_A HHR23A, UV excision rep 99.7 3.1E-16 1.1E-20 121.7 10.4 76 378-453 3-81 (85)
79 3q3f_A Ribonuclease/ubiquitin 99.7 4.2E-17 1.5E-21 144.2 6.1 82 1-82 106-187 (189)
80 1we7_A SF3A1 protein; structur 99.7 2.4E-16 8.1E-21 129.5 9.6 79 379-457 24-112 (115)
81 1uel_A HHR23B, UV excision rep 99.7 4.7E-16 1.6E-20 123.2 10.9 75 381-455 1-78 (95)
82 4a20_A Ubiquitin-like protein 99.7 1.6E-16 5.3E-21 125.7 7.9 72 1-72 20-95 (98)
83 3mtn_B UBA80, ubcep1, ubiquiti 99.7 2.1E-16 7.1E-21 122.7 8.5 76 1-76 4-79 (85)
84 1v2y_A 3300001G02RIK protein; 99.7 4.5E-17 1.5E-21 129.8 4.7 76 1-76 8-99 (105)
85 3u5e_m 60S ribosomal protein L 99.7 7.4E-18 2.5E-22 141.2 0.2 77 381-457 1-77 (128)
86 2l7r_A Ubiquitin-like protein 99.7 1.6E-16 5.6E-21 125.2 7.8 74 1-76 20-93 (93)
87 1wy8_A NP95-like ring finger p 99.7 2.1E-16 7.2E-21 123.8 8.3 76 1-76 8-85 (89)
88 3b1l_X E3 ubiquitin-protein li 99.5 8.2E-18 2.8E-22 127.8 0.0 75 1-75 1-75 (76)
89 1j8c_A Ubiquitin-like protein 99.7 4.1E-16 1.4E-20 129.5 10.1 78 379-457 31-108 (125)
90 3m62_B UV excision repair prot 99.6 1.6E-16 5.6E-21 128.3 7.3 74 1-74 2-75 (106)
91 3vdz_A Ubiquitin-40S ribosomal 99.6 2.9E-16 1E-20 127.9 8.7 76 1-76 36-111 (111)
92 3m62_B UV excision repair prot 99.6 2.6E-16 9E-21 127.1 8.2 73 381-453 2-74 (106)
93 3u5c_f 40S ribosomal protein S 99.6 1.1E-17 3.7E-22 143.2 0.0 77 381-457 1-77 (152)
94 1v5o_A 1700011N24RIK protein; 99.6 3E-16 1E-20 126.0 8.0 78 379-456 6-88 (102)
95 1ttn_A DC-UBP, dendritic cell- 99.6 5.8E-16 2E-20 125.2 9.6 79 378-456 21-99 (106)
96 1wx7_A Ubiquilin 3; ubiquitin- 99.6 4.9E-16 1.7E-20 125.7 9.2 77 379-456 16-92 (106)
97 4a20_A Ubiquitin-like protein 99.6 6.3E-16 2.1E-20 122.2 9.5 75 378-452 17-95 (98)
98 2bwf_A Ubiquitin-like protein 99.6 7.7E-16 2.6E-20 117.1 9.7 71 381-452 5-75 (77)
99 1wgh_A Ubiquitin-like 3, HCG-1 99.6 6.3E-16 2.2E-20 125.5 9.6 79 378-456 14-102 (116)
100 1uel_A HHR23B, UV excision rep 99.6 6.2E-16 2.1E-20 122.5 9.4 73 1-73 1-76 (95)
101 2klc_A Ubiquilin-1; ubiquitin- 99.6 9.8E-16 3.4E-20 122.6 10.4 80 376-456 21-100 (101)
102 2gow_A HCG-1 protein, ubiquiti 99.6 3.1E-16 1.1E-20 129.2 7.5 75 1-75 18-102 (125)
103 2wyq_A HHR23A, UV excision rep 99.6 5.9E-16 2E-20 120.1 8.7 73 1-73 6-81 (85)
104 2dzi_A Ubiquitin-like protein 99.6 6.2E-16 2.1E-20 118.8 8.7 73 1-73 8-80 (81)
105 4dbg_A Ranbp-type and C3HC4-ty 99.6 5.5E-16 1.9E-20 122.9 8.3 73 1-73 25-100 (105)
106 3m63_B Ubiquitin domain-contai 99.6 1.3E-16 4.5E-21 127.5 4.8 91 359-452 9-99 (101)
107 1wgd_A Homocysteine-responsive 99.6 5.2E-16 1.8E-20 122.5 7.6 76 1-76 8-89 (93)
108 1wju_A NEDD8 ultimate buster-1 99.6 6.6E-16 2.2E-20 121.4 8.0 65 10-75 29-93 (100)
109 2gow_A HCG-1 protein, ubiquiti 99.6 1E-15 3.4E-20 126.2 9.3 78 379-456 16-103 (125)
110 3m63_B Ubiquitin domain-contai 99.6 3.3E-16 1.1E-20 125.2 5.3 93 129-224 7-99 (101)
111 2bwf_A Ubiquitin-like protein 99.6 1.5E-15 5E-20 115.5 8.4 72 1-73 5-76 (77)
112 1ttn_A DC-UBP, dendritic cell- 99.6 1.1E-15 3.7E-20 123.6 7.5 74 1-74 24-97 (106)
113 2kdb_A Homocysteine-responsive 99.6 8.9E-16 3E-20 121.7 6.7 70 1-70 24-99 (99)
114 1yqb_A Ubiquilin 3; structural 99.6 1.9E-15 6.7E-20 120.6 7.9 74 1-75 23-96 (100)
115 4dbg_A Ranbp-type and C3HC4-ty 99.6 4.6E-15 1.6E-19 117.6 9.7 73 380-452 24-99 (105)
116 2ojr_A Ubiquitin; lanthide-bin 99.6 3.7E-15 1.3E-19 121.5 8.9 76 1-76 36-111 (111)
117 3u5e_m 60S ribosomal protein L 99.6 1.2E-16 4.2E-21 133.8 0.0 76 1-76 1-76 (128)
118 1we6_A Splicing factor, putati 99.6 2.5E-15 8.4E-20 122.6 7.7 79 74-152 25-107 (111)
119 1wx8_A Riken cDNA 4931431F19; 99.6 1.6E-15 5.3E-20 120.5 6.3 75 1-76 18-92 (96)
120 3u5c_f 40S ribosomal protein S 99.6 1.5E-16 5.2E-21 136.1 0.0 76 1-76 1-76 (152)
121 2klc_A Ubiquilin-1; ubiquitin- 99.6 7.6E-15 2.6E-19 117.4 8.5 73 1-74 26-98 (101)
122 1j8c_A Ubiquitin-like protein 99.6 6.6E-15 2.3E-19 122.2 8.4 75 1-76 33-107 (125)
123 2xzm_9 RPS31E; ribosome, trans 99.6 2.9E-16 9.8E-21 137.7 0.0 72 1-77 1-72 (189)
124 2kdb_A Homocysteine-responsive 99.6 4.4E-15 1.5E-19 117.6 6.8 73 378-450 21-99 (99)
125 2xzm_9 RPS31E; ribosome, trans 99.6 3E-16 1E-20 137.6 0.0 72 381-457 1-72 (189)
126 1v5o_A 1700011N24RIK protein; 99.5 5.7E-15 1.9E-19 118.5 6.9 76 1-76 8-88 (102)
127 2io1_B Small ubiquitin-related 99.5 1.8E-14 6.1E-19 113.1 9.0 80 378-457 5-84 (94)
128 1wx7_A Ubiquilin 3; ubiquitin- 99.5 1E-14 3.4E-19 118.0 7.8 74 1-75 18-91 (106)
129 2dzm_A FAS-associated factor 1 99.5 6E-15 2E-19 116.7 5.7 72 1-73 9-82 (100)
130 1wia_A Hypothetical ubiquitin- 99.5 2.9E-14 1E-18 112.9 9.5 74 379-455 6-80 (95)
131 2kd0_A LRR repeats and ubiquit 99.5 2.5E-14 8.5E-19 110.6 8.7 69 383-451 14-82 (85)
132 1v5t_A 8430435I17RIK protein; 99.5 2E-14 6.9E-19 112.4 7.8 73 379-452 6-82 (90)
133 2dzj_A Synaptic glycoprotein S 99.5 9E-15 3.1E-19 113.5 5.5 69 1-69 11-85 (88)
134 2daf_A FLJ35834 protein; hypot 99.5 4.5E-14 1.5E-18 112.7 9.2 74 379-452 14-88 (118)
135 1we7_A SF3A1 protein; structur 99.5 2.7E-14 9.1E-19 117.2 7.6 76 1-76 26-111 (115)
136 2dzm_A FAS-associated factor 1 99.5 2.1E-14 7.3E-19 113.5 6.5 73 380-453 8-82 (100)
137 1x1m_A Ubiquitin-like protein 99.5 4.9E-14 1.7E-18 114.0 8.7 76 379-454 11-101 (107)
138 1v5t_A 8430435I17RIK protein; 99.5 3.1E-14 1.1E-18 111.4 6.9 72 1-73 8-83 (90)
139 1wgg_A Ubiquitin carboxyl-term 99.5 3.8E-14 1.3E-18 112.1 7.4 72 379-452 6-78 (96)
140 2io0_B Small ubiquitin-related 99.5 1.3E-13 4.6E-18 107.2 10.1 80 378-457 3-82 (91)
141 1wia_A Hypothetical ubiquitin- 99.5 3.9E-14 1.3E-18 112.2 7.2 71 1-74 8-79 (95)
142 2kd0_A LRR repeats and ubiquit 99.5 5.7E-14 1.9E-18 108.6 7.6 70 3-72 14-83 (85)
143 2kjr_A CG11242; UBL, ubiquitin 99.5 1.2E-13 4.2E-18 108.5 9.3 72 379-450 14-93 (95)
144 1wgg_A Ubiquitin carboxyl-term 99.5 5.2E-14 1.8E-18 111.3 7.0 71 1-73 8-79 (96)
145 1wxv_A BAG-family molecular ch 99.5 1.1E-13 3.6E-18 108.9 8.6 74 379-453 6-85 (92)
146 3ai5_A Yeast enhanced green fl 99.5 9.6E-14 3.3E-18 131.6 9.6 77 378-454 231-307 (307)
147 2kjr_A CG11242; UBL, ubiquitin 99.5 8.7E-14 3E-18 109.4 7.8 69 2-70 17-93 (95)
148 2dzj_A Synaptic glycoprotein S 99.5 5.2E-14 1.8E-18 109.2 6.4 70 380-449 10-85 (88)
149 2daf_A FLJ35834 protein; hypot 99.5 1.2E-13 4.3E-18 110.2 8.4 76 153-228 16-92 (118)
150 1x1m_A Ubiquitin-like protein 99.5 6.8E-14 2.3E-18 113.1 7.0 73 1-73 13-100 (107)
151 4b6w_A Tubulin-specific chaper 99.5 1.3E-13 4.3E-18 106.4 7.6 71 382-452 4-83 (86)
152 1v86_A DNA segment, CHR 7, way 99.4 8.2E-14 2.8E-18 110.0 5.4 72 379-452 16-87 (95)
153 2d07_B Ubiquitin-like protein 99.4 4.5E-13 1.6E-17 105.0 9.5 79 378-456 15-93 (93)
154 2kj6_A Tubulin folding cofacto 99.4 4E-13 1.4E-17 105.8 8.2 72 380-451 14-94 (97)
155 4b6w_A Tubulin-specific chaper 99.4 2.9E-13 1E-17 104.3 7.3 67 160-226 12-85 (86)
156 3ai5_A Yeast enhanced green fl 99.4 2.5E-13 8.4E-18 128.8 8.2 74 1-74 234-307 (307)
157 1oqy_A HHR23A, UV excision rep 99.4 3E-13 1E-17 132.0 8.0 78 379-456 6-87 (368)
158 1wxv_A BAG-family molecular ch 99.4 4.1E-13 1.4E-17 105.6 7.3 72 1-73 8-85 (92)
159 1v86_A DNA segment, CHR 7, way 99.4 1.8E-13 6.2E-18 108.0 5.2 70 1-72 18-87 (95)
160 1wz0_A Ubiquitin-like protein 99.4 6.4E-13 2.2E-17 105.9 8.2 80 378-457 22-101 (104)
161 2kj6_A Tubulin folding cofacto 99.4 4.5E-13 1.5E-17 105.5 6.4 70 2-71 16-94 (97)
162 2eke_C Ubiquitin-like protein 99.4 1.4E-12 4.6E-17 104.0 8.8 77 379-456 30-106 (106)
163 2io1_B Small ubiquitin-related 99.4 9E-13 3.1E-17 103.3 7.6 76 1-76 8-83 (94)
164 1oqy_A HHR23A, UV excision rep 99.4 6.6E-13 2.3E-17 129.6 7.2 75 1-75 8-86 (368)
165 1v6e_A Cytoskeleton-associated 99.4 1.6E-12 5.6E-17 102.6 7.9 71 381-451 8-86 (95)
166 1wf9_A NPL4 family protein; be 99.3 7.2E-13 2.5E-17 107.0 5.8 72 380-452 7-94 (107)
167 2k8h_A Small ubiquitin protein 99.3 1.4E-12 4.7E-17 104.8 6.8 80 378-457 24-103 (110)
168 1wf9_A NPL4 family protein; be 99.3 8.8E-13 3E-17 106.5 5.6 71 1-72 8-94 (107)
169 1wm3_A Ubiquitin-like protein 99.3 1.2E-11 4.3E-16 92.0 9.0 70 381-450 2-71 (72)
170 1v6e_A Cytoskeleton-associated 99.3 4.9E-12 1.7E-16 99.9 7.1 70 2-71 9-86 (95)
171 1t0y_A Tubulin folding cofacto 99.3 1.2E-11 4.2E-16 102.1 9.0 72 380-451 6-85 (122)
172 2io0_B Small ubiquitin-related 99.3 1.4E-11 4.7E-16 95.8 8.2 76 1-76 6-81 (91)
173 2kzr_A Ubiquitin thioesterase 99.2 6.5E-12 2.2E-16 97.2 6.0 71 381-452 1-77 (86)
174 3a4r_A Nfatc2-interacting prot 99.2 4.3E-11 1.5E-15 90.7 9.5 73 378-450 5-78 (79)
175 1t0y_A Tubulin folding cofacto 99.2 1.8E-11 6.3E-16 101.1 7.8 71 2-72 8-86 (122)
176 1wm3_A Ubiquitin-like protein 99.2 2.8E-11 9.5E-16 90.2 7.4 70 1-70 2-71 (72)
177 2d07_B Ubiquitin-like protein 99.2 4.5E-11 1.5E-15 93.5 8.1 75 1-75 18-92 (93)
178 2kzr_A Ubiquitin thioesterase 99.2 2.6E-11 8.8E-16 93.8 5.5 70 1-71 1-76 (86)
179 1wz0_A Ubiquitin-like protein 99.1 5.8E-11 2E-15 94.5 6.5 76 1-76 25-100 (104)
180 3a4r_A Nfatc2-interacting prot 99.1 1.5E-10 5E-15 87.8 7.9 70 1-70 8-78 (79)
181 2k8h_A Small ubiquitin protein 99.1 5.4E-11 1.8E-15 95.5 5.7 77 1-77 27-103 (110)
182 2eke_C Ubiquitin-like protein 99.1 1.3E-10 4.3E-15 92.6 7.4 74 1-75 32-105 (106)
183 3shq_A UBLCP1; phosphatase, hy 99.1 1.1E-10 3.7E-15 112.4 7.2 72 379-451 4-78 (320)
184 3shq_A UBLCP1; phosphatase, hy 99.1 9.3E-11 3.2E-15 112.8 6.5 77 75-152 4-83 (320)
185 1wjn_A Tubulin-folding protein 99.1 6.7E-10 2.3E-14 87.9 9.2 72 380-451 9-91 (97)
186 3kyd_D Small ubiquitin-related 99.0 1.6E-09 5.4E-14 87.0 10.2 77 379-455 39-115 (115)
187 3tix_A Ubiquitin-like protein 98.9 1.5E-09 5.1E-14 93.6 7.3 79 378-457 55-133 (207)
188 3pge_A SUMO-modified prolifera 98.9 3.1E-09 1.1E-13 94.0 9.6 78 379-457 28-105 (200)
189 2ylm_A Ubiquitin carboxyl-term 98.9 1.8E-06 6.1E-11 88.9 30.6 346 89-435 38-502 (530)
190 3v7o_A Minor nucleoprotein VP3 98.8 5.4E-10 1.8E-14 97.8 0.3 80 377-457 18-97 (227)
191 1wjn_A Tubulin-folding protein 98.8 1.2E-08 4.1E-13 80.6 7.9 73 76-148 9-92 (97)
192 2ylm_A Ubiquitin carboxyl-term 98.7 1.3E-05 4.3E-10 82.6 29.5 331 11-343 36-479 (530)
193 3kyd_D Small ubiquitin-related 98.7 1E-07 3.4E-12 76.5 9.5 74 228-301 40-113 (115)
194 3goe_A DNA repair protein RAD6 98.6 3E-07 1E-11 66.8 9.7 69 383-451 12-81 (82)
195 2pjh_A Protein NPL4, nuclear p 98.5 7.1E-08 2.4E-12 72.9 3.7 71 379-450 3-78 (80)
196 3pge_A SUMO-modified prolifera 98.5 7.7E-07 2.6E-11 78.7 10.2 99 227-327 28-130 (200)
197 3tix_A Ubiquitin-like protein 98.4 5.5E-07 1.9E-11 77.8 7.5 76 228-304 57-132 (207)
198 2jxx_A Nfatc2-interacting prot 98.4 1.6E-06 5.4E-11 67.6 9.0 73 378-450 23-96 (97)
199 3ix6_A TS, tsase, thymidylate 98.4 5.3E-08 1.8E-12 93.6 0.2 79 378-457 19-97 (360)
200 3uf8_A Ubiquitin-like protein 98.3 1.7E-06 5.7E-11 78.1 8.6 80 377-457 18-97 (209)
201 4efo_A Serine/threonine-protei 98.2 4.5E-06 1.5E-10 64.2 7.5 55 7-61 20-76 (94)
202 3v7o_A Minor nucleoprotein VP3 98.2 2.2E-07 7.5E-12 81.4 0.1 82 71-153 16-97 (227)
203 2pjh_A Protein NPL4, nuclear p 98.1 2.1E-06 7E-11 64.8 3.7 71 75-146 3-78 (80)
204 3goe_A DNA repair protein RAD6 98.1 2.6E-05 8.8E-10 56.7 9.2 70 154-223 11-81 (82)
205 2l76_A Nfatc2-interacting prot 98.0 2.4E-05 8.2E-10 59.8 8.7 72 379-451 20-91 (95)
206 4efo_A Serine/threonine-protei 98.0 1.7E-05 5.7E-10 61.0 7.4 65 388-452 21-88 (94)
207 3ivf_A Talin-1; FERM domain, c 98.0 0.00036 1.2E-08 68.7 18.6 136 314-452 12-167 (371)
208 2al3_A TUG long isoform; TUG U 98.0 2.1E-05 7E-10 59.6 7.2 75 227-301 8-82 (90)
209 3ivf_A Talin-1; FERM domain, c 97.9 0.00042 1.4E-08 68.2 18.5 135 162-299 12-166 (371)
210 3uf8_A Ubiquitin-like protein 97.9 8.1E-05 2.8E-09 67.0 10.5 91 226-318 19-109 (209)
211 2jxx_A Nfatc2-interacting prot 97.8 6.8E-05 2.3E-09 58.3 8.4 71 228-298 25-96 (97)
212 4da1_A Protein phosphatase 1K, 97.8 2.4E-06 8.1E-11 85.0 0.0 78 379-457 29-106 (389)
213 2al3_A TUG long isoform; TUG U 97.8 8.1E-05 2.8E-09 56.3 7.5 74 379-452 8-81 (90)
214 2kc2_A Talin-1, F1; FERM, adhe 97.7 4E-05 1.4E-09 62.5 5.9 71 306-376 13-122 (128)
215 3ix6_A TS, tsase, thymidylate 97.6 7.5E-06 2.6E-10 78.7 -0.0 86 71-157 16-101 (360)
216 2kc2_A Talin-1, F1; FERM, adhe 97.6 0.0001 3.5E-09 60.1 5.8 71 382-452 13-122 (128)
217 2l76_A Nfatc2-interacting prot 97.5 0.00053 1.8E-08 52.4 8.2 70 229-299 22-91 (95)
218 2bps_A YUKD protein; ubiquitin 97.4 0.0004 1.4E-08 51.8 6.8 62 388-449 14-80 (81)
219 4da1_A Protein phosphatase 1K, 97.0 9.9E-05 3.4E-09 73.2 0.0 79 229-308 31-109 (389)
220 3qx1_A FAS-associated factor 1 97.0 0.0036 1.2E-07 47.3 8.7 72 379-451 6-82 (84)
221 3qx1_A FAS-associated factor 1 96.7 0.0074 2.5E-07 45.5 8.5 70 305-375 8-82 (84)
222 2bps_A YUKD protein; ubiquitin 96.6 0.0072 2.5E-07 45.0 7.1 64 310-373 12-80 (81)
223 1wj4_A KIAA0794 protein; UBX d 95.9 0.021 7.1E-07 46.5 7.3 72 379-451 42-118 (124)
224 2dzk_A UBX domain-containing p 95.9 0.028 9.4E-07 44.6 7.9 72 305-376 14-90 (109)
225 2dzk_A UBX domain-containing p 95.8 0.036 1.2E-06 44.0 8.2 73 152-224 13-90 (109)
226 1wj4_A KIAA0794 protein; UBX d 95.8 0.026 8.7E-07 45.9 7.4 71 305-376 44-119 (124)
227 1ryj_A Unknown; beta/alpha pro 95.6 0.13 4.3E-06 37.1 9.8 67 380-456 4-70 (70)
228 2daj_A KIAA0977 protein, COBL- 95.5 0.026 8.7E-07 41.6 5.4 64 380-443 10-76 (91)
229 4e71_A Plexin-B2, MM1; transme 95.2 0.1 3.4E-06 41.1 8.5 63 390-452 23-110 (111)
230 4e71_A Plexin-B2, MM1; transme 94.8 0.04 1.4E-06 43.3 5.2 64 9-72 22-110 (111)
231 2cr5_A Reproduction 8; UBX dom 94.5 0.13 4.4E-06 40.7 7.6 71 152-223 23-97 (109)
232 2juo_A GA-binding protein alph 94.1 0.3 1E-05 35.9 8.0 58 241-298 5-62 (89)
233 2cr5_A Reproduction 8; UBX dom 94.0 0.21 7.1E-06 39.5 8.0 72 379-451 22-97 (109)
234 3jyu_A Ubiquitin carboxyl-term 94.0 0.32 1.1E-05 44.0 10.2 65 392-456 153-224 (231)
235 4a3p_A Ubiquitin carboxyl-term 93.9 0.099 3.4E-06 46.9 6.6 65 392-456 141-212 (217)
236 3h6n_A Plexin-D1; structural g 93.9 0.39 1.3E-05 38.6 9.1 64 389-452 15-104 (127)
237 2r2o_A Plexin-B1; effector dom 93.5 0.21 7.1E-06 40.7 7.0 65 10-74 40-130 (138)
238 1s3s_G P47 protein; AAA ATPase 93.4 0.22 7.4E-06 40.6 7.1 69 379-447 51-123 (127)
239 1s3s_G P47 protein; AAA ATPase 93.4 0.2 6.8E-06 40.8 6.9 68 152-219 52-123 (127)
240 3h6n_A Plexin-D1; structural g 93.3 0.41 1.4E-05 38.4 8.3 68 6-73 12-105 (127)
241 2l32_A Small archaeal modifier 93.3 0.2 6.8E-06 36.5 6.1 66 381-456 1-66 (74)
242 1oey_A P67-PHOX, neutrophil cy 92.8 0.22 7.5E-06 37.0 5.7 47 379-427 4-50 (83)
243 2r2o_A Plexin-B1; effector dom 92.5 0.53 1.8E-05 38.3 8.0 63 391-453 41-129 (138)
244 2juo_A GA-binding protein alph 92.4 0.52 1.8E-05 34.6 7.0 61 393-453 5-65 (89)
245 2daj_A KIAA0977 protein, COBL- 92.4 0.25 8.7E-06 36.4 5.4 64 152-215 10-76 (91)
246 1vjk_A Molybdopterin convertin 91.9 1.2 4.2E-05 34.1 9.4 73 379-456 8-98 (98)
247 4e74_A Plexin-A4; RBD, structu 91.8 0.53 1.8E-05 37.4 7.1 64 390-453 26-115 (117)
248 1tyg_B YJBS; alpha beta barrel 91.4 0.39 1.3E-05 36.1 5.8 68 379-456 19-87 (87)
249 4e74_A Plexin-A4; RBD, structu 91.2 0.49 1.7E-05 37.6 6.3 63 10-72 26-114 (117)
250 3rpf_C Molybdopterin convertin 90.2 1.2 4E-05 32.2 7.4 58 394-456 15-74 (74)
251 3kuz_A Plexin-C1; structural g 89.3 2.8 9.7E-05 33.4 9.2 61 391-451 39-125 (126)
252 1f0z_A THis protein; ubiquitin 88.4 0.77 2.6E-05 32.4 5.0 58 394-456 9-66 (66)
253 2l32_A Small archaeal modifier 87.7 1.5 5.3E-05 31.7 6.4 60 305-374 1-60 (74)
254 1oey_A P67-PHOX, neutrophil cy 86.8 1.3 4.6E-05 32.8 5.6 45 307-351 6-50 (83)
255 3jyu_A Ubiquitin carboxyl-term 86.5 2.5 8.6E-05 38.0 8.6 62 165-226 154-222 (231)
256 3po0_A Small archaeal modifier 86.3 3.1 0.00011 31.0 7.8 61 391-456 18-89 (89)
257 4a3p_A Ubiquitin carboxyl-term 86.2 1.6 5.5E-05 38.9 7.1 62 164-225 141-209 (217)
258 3kuz_A Plexin-C1; structural g 85.6 1.5 5.1E-05 35.0 5.7 60 11-70 39-124 (126)
259 2kl0_A Putative thiamin biosyn 84.4 1.2 4.1E-05 32.2 4.3 61 389-457 6-66 (73)
260 1fm0_D Molybdopterin convertin 83.8 2.6 8.9E-05 30.7 6.2 59 392-456 18-81 (81)
261 1ef1_A Moesin; membrane, FERM 83.7 4.8 0.00017 37.4 9.5 73 380-453 1-79 (294)
262 1h4r_A Merlin; FERM, neurofibr 83.2 4.4 0.00015 38.1 9.0 75 378-453 20-99 (314)
263 2kvr_A Ubiquitin carboxyl-term 82.9 1.1 3.8E-05 36.4 4.0 34 393-426 58-91 (130)
264 3dwg_C 9.5 kDa culture filtrat 82.8 6.5 0.00022 29.5 8.2 65 390-456 16-93 (93)
265 2k5p_A THis protein, thiamine- 81.8 1.1 3.6E-05 33.0 3.2 62 389-457 6-70 (78)
266 2q5w_D Molybdopterin convertin 80.9 2.7 9.3E-05 30.3 5.2 59 392-456 17-77 (77)
267 1ryj_A Unknown; beta/alpha pro 80.1 12 0.00042 26.4 8.4 63 152-224 4-66 (70)
268 2kvr_A Ubiquitin carboxyl-term 79.5 1.8 6.3E-05 35.1 4.2 36 11-46 56-91 (130)
269 2kmc_A Fermitin family homolog 79.3 12 0.00039 28.5 8.0 71 2-72 21-99 (102)
270 2cu3_A Unknown function protei 79.0 4.8 0.00016 27.9 5.8 60 389-456 5-64 (64)
271 3ig3_A Plxna3 protein; plexin 78.0 9.6 0.00033 38.9 9.6 64 390-453 246-335 (627)
272 3hm6_X Plexin-B1; structural g 77.8 5.2 0.00018 40.8 7.6 63 87-149 274-362 (644)
273 3hm6_X Plexin-B1; structural g 77.3 4.4 0.00015 41.4 6.9 64 11-74 274-363 (644)
274 1vd2_A Protein kinase C, IOTA 77.2 10 0.00035 28.4 7.3 47 379-426 5-52 (89)
275 2i1j_A Moesin; FERM, coiled-co 76.9 8.5 0.00029 39.6 9.2 74 379-453 3-82 (575)
276 1vjk_A Molybdopterin convertin 75.9 13 0.00045 28.1 8.0 70 74-148 7-94 (98)
277 2kmc_A Fermitin family homolog 75.3 15 0.0005 27.9 7.6 71 381-451 20-98 (102)
278 1rws_A Hypothetical protein PF 75.2 1.1 3.6E-05 32.8 1.4 54 394-456 24-77 (77)
279 1wgk_A Riken cDNA 2900073H19 p 75.1 26 0.00089 27.4 9.7 75 380-457 11-109 (114)
280 2g1e_A Hypothetical protein TA 74.0 11 0.00038 27.8 7.1 62 394-456 18-90 (90)
281 1ef1_A Moesin; membrane, FERM 73.8 14 0.00047 34.2 9.2 70 229-299 2-77 (294)
282 1h4r_A Merlin; FERM, neurofibr 72.9 16 0.00055 34.1 9.5 72 227-299 21-97 (314)
283 1vd2_A Protein kinase C, IOTA 72.0 19 0.00066 26.9 7.7 48 76-124 6-54 (89)
284 3u52_E Phenol hydroxylase comp 70.8 17 0.00058 28.5 7.3 64 392-455 39-112 (119)
285 1ip9_A BEM1 protein; ubiquitin 70.1 11 0.00036 27.9 5.7 43 379-424 11-53 (85)
286 3ig3_A Plxna3 protein; plexin 69.9 13 0.00046 37.8 8.3 65 10-74 246-336 (627)
287 3qij_A Protein 4.1; cytoskelet 69.9 13 0.00044 34.6 8.0 74 378-451 15-94 (296)
288 2qjl_A URM1, ubiquitin-related 69.1 35 0.0012 25.8 9.4 65 391-456 20-99 (99)
289 2i1j_A Moesin; FERM, coiled-co 68.0 17 0.00059 37.3 9.1 71 228-299 4-80 (575)
290 1wgr_A Growth factor receptor- 67.1 13 0.00045 28.4 6.0 72 379-450 8-90 (100)
291 1y8x_B Ubiquitin-activating en 65.9 12 0.00041 28.6 5.5 59 392-450 6-82 (98)
292 3qa8_A MGC80376 protein; kinas 63.8 5.8 0.0002 41.7 4.6 51 389-439 320-371 (676)
293 3rpf_C Molybdopterin convertin 63.7 24 0.00082 25.0 6.7 56 167-227 16-73 (74)
294 1ip9_A BEM1 protein; ubiquitin 60.5 29 0.00098 25.6 6.4 37 75-112 11-47 (85)
295 4eut_A Serine/threonine-protei 58.4 36 0.0012 32.6 9.1 43 7-49 318-360 (396)
296 3qij_A Protein 4.1; cytoskelet 58.2 23 0.00078 32.8 7.3 71 228-298 17-93 (296)
297 2kmm_A Guanosine-3',5'-BIS(dip 57.6 14 0.00048 25.9 4.5 61 1-70 1-61 (73)
298 2inc_C TOUB protein; DIIRON, 4 57.3 54 0.0018 24.0 8.7 61 392-452 14-82 (83)
299 2l52_A Methanosarcina acetivor 56.8 51 0.0018 24.8 7.9 74 380-456 3-99 (99)
300 4eut_A Serine/threonine-protei 54.9 19 0.00067 34.6 6.5 51 390-440 321-373 (396)
301 1wgk_A Riken cDNA 2900073H19 p 54.1 71 0.0024 24.9 8.4 74 76-152 11-108 (114)
302 1fm0_D Molybdopterin convertin 53.9 24 0.00084 25.3 5.4 54 240-299 18-76 (81)
303 1wgr_A Growth factor receptor- 53.5 34 0.0011 26.2 6.1 40 75-114 8-47 (100)
304 3ge3_C Toluene-4-monooxygenase 52.2 66 0.0023 23.5 7.2 60 392-451 16-82 (84)
305 3po0_A Small archaeal modifier 52.0 46 0.0016 24.3 6.8 59 163-226 18-87 (89)
306 1wgy_A RAP guanine nucleotide 51.8 59 0.002 25.0 7.2 72 153-224 10-86 (104)
307 1q1o_A Cell division control p 50.9 24 0.00081 26.9 4.8 39 75-113 4-49 (98)
308 2kl0_A Putative thiamin biosyn 50.2 17 0.0006 25.9 3.9 58 311-376 4-61 (73)
309 1tyg_B YJBS; alpha beta barrel 49.9 57 0.002 24.1 6.8 65 151-225 19-84 (87)
310 3onh_A Ubiquitin-activating en 48.5 38 0.0013 27.0 5.8 56 394-450 9-77 (127)
311 2k9x_A Tburm1, uncharacterized 48.3 18 0.00061 28.2 3.9 76 228-305 4-103 (110)
312 1j0g_A Hypothetical protein 18 47.5 50 0.0017 23.9 5.7 64 393-456 26-90 (92)
313 2lgx_A Fermitin family homolog 46.4 15 0.00051 28.3 3.0 70 2-72 28-102 (112)
314 3qa8_A MGC80376 protein; kinas 46.0 19 0.00064 37.8 4.9 52 312-363 319-371 (676)
315 2kmm_A Guanosine-3',5'-BIS(dip 45.7 53 0.0018 22.7 6.0 62 381-451 1-62 (73)
316 2k9x_A Tburm1, uncharacterized 45.6 14 0.00048 28.8 3.0 75 380-456 4-102 (110)
317 1q1o_A Cell division control p 45.2 24 0.00083 26.8 4.1 38 380-417 5-49 (98)
318 2cu3_A Unknown function protei 43.6 44 0.0015 22.8 5.1 58 311-376 3-60 (64)
319 1wgy_A RAP guanine nucleotide 43.2 61 0.0021 24.9 6.1 72 77-148 10-86 (104)
320 2k5p_A THis protein, thiamine- 42.9 18 0.00063 26.2 3.0 60 311-375 4-64 (78)
321 3dwg_C 9.5 kDa culture filtrat 42.0 1E+02 0.0034 22.6 8.2 60 166-227 20-92 (93)
322 3u52_E Phenol hydroxylase comp 40.8 99 0.0034 24.2 7.0 66 309-374 27-107 (119)
323 4gmv_A RAS-associated and plec 40.4 52 0.0018 30.2 6.4 67 383-449 34-111 (281)
324 2v1y_A Phosphatidylinositol-4, 39.4 1.1E+02 0.0038 23.6 7.1 60 231-290 22-95 (108)
325 2qjl_A URM1, ubiquitin-related 38.9 1.2E+02 0.0041 22.6 7.8 24 87-110 20-45 (99)
326 2hj1_A Hypothetical protein; s 37.9 1.1E+02 0.0039 22.9 7.0 69 380-453 12-86 (97)
327 3au4_A Myosin-X; protein-prote 37.1 63 0.0022 32.8 7.2 48 379-426 215-264 (555)
328 2q5w_D Molybdopterin convertin 36.9 50 0.0017 23.3 4.7 56 163-224 16-73 (77)
329 2v1y_A Phosphatidylinositol-4, 36.3 50 0.0017 25.6 4.7 33 305-337 20-52 (108)
330 1pqs_A Cell division control p 36.0 30 0.001 25.0 3.2 26 316-341 3-28 (77)
331 3hk0_A Growth factor receptor- 35.8 59 0.002 29.4 5.9 55 382-436 10-71 (256)
332 2zjd_A Microtubule-associated 35.5 1.1E+02 0.0037 24.5 6.8 43 242-284 56-100 (130)
333 1f0z_A THis protein; ubiquitin 34.7 75 0.0026 21.7 5.2 57 161-224 6-62 (66)
334 2j58_A WZA, outer membrane lip 34.6 2.9E+02 0.01 26.1 11.0 105 323-451 117-231 (359)
335 3chb_D Cholera toxin; toxin/re 33.9 43 0.0015 24.3 3.6 44 307-352 39-92 (104)
336 2eel_A Cell death activator CI 31.9 76 0.0026 23.7 4.9 49 401-452 28-78 (91)
337 1rax_A Protein (RA-domain of R 31.9 1.1E+02 0.0038 23.7 5.9 70 2-74 32-112 (115)
338 1y8x_B Ubiquitin-activating en 31.8 83 0.0028 23.8 5.2 61 163-223 5-83 (98)
339 1c1y_B Proto-onkogene serine/t 31.2 73 0.0025 23.0 4.5 42 155-197 4-45 (77)
340 2g1e_A Hypothetical protein TA 31.1 1.5E+02 0.005 21.4 6.6 56 243-299 19-85 (90)
341 1v8c_A MOAD related protein; r 30.7 76 0.0026 26.6 5.4 61 394-456 17-87 (168)
342 3onh_A Ubiquitin-activating en 30.3 1.2E+02 0.004 24.1 6.0 52 172-224 19-79 (127)
343 3h9d_A ATG8, microtubule-assoc 30.2 77 0.0026 24.9 5.0 57 395-451 52-112 (119)
344 2c7h_A RBBP6, retinoblastoma-b 29.8 66 0.0023 23.7 4.2 56 14-74 21-82 (86)
345 1f2r_I Inhibitor of caspase-ac 29.5 64 0.0022 24.5 4.2 48 401-451 37-88 (100)
346 1wxm_A A-RAF proto-oncogene se 29.4 87 0.003 23.1 4.7 43 154-197 9-51 (86)
347 2inc_C TOUB protein; DIIRON, 4 28.8 1.7E+02 0.0058 21.3 7.5 60 88-147 14-81 (83)
348 3rui_B Autophagy-related prote 27.8 2E+02 0.0068 22.5 7.0 43 242-284 50-93 (118)
349 1eo6_A GATE-16, golgi-associat 27.8 1.7E+02 0.0058 22.8 6.7 43 242-284 48-91 (117)
350 2dhz_A RAP guanine nucleotide 27.1 1.2E+02 0.0041 23.9 5.5 73 152-224 9-92 (120)
351 3r8s_T 50S ribosomal protein L 27.0 79 0.0027 23.7 4.3 39 390-428 27-66 (93)
352 2c7h_A RBBP6, retinoblastoma-b 26.8 1.9E+02 0.0065 21.2 7.4 43 382-424 8-52 (86)
353 1pqs_A Cell division control p 26.6 43 0.0015 24.2 2.7 36 392-427 3-43 (77)
354 3m95_A Autophagy related prote 25.7 88 0.003 24.9 4.6 44 395-438 57-101 (125)
355 3pvl_A Myosin VIIA isoform 1; 25.4 86 0.0029 32.6 5.8 47 379-425 262-309 (655)
356 3tca_A Amyloid beta A4 precurs 25.3 1.2E+02 0.004 27.4 6.3 44 381-424 35-78 (291)
357 3hvz_A Uncharacterized protein 24.7 1E+02 0.0036 22.1 4.5 60 2-70 7-66 (78)
358 3lxf_A Ferredoxin; iron, iron- 24.7 91 0.0031 23.6 4.5 32 2-37 2-33 (104)
359 2r2q_A Gamma-aminobutyric acid 24.0 1E+02 0.0034 23.8 4.6 58 394-451 47-108 (110)
360 2lgx_A Fermitin family homolog 23.6 69 0.0024 24.6 3.4 69 229-298 27-100 (112)
361 1vq8_S 50S ribosomal protein L 23.4 75 0.0026 23.4 3.5 34 390-423 22-55 (85)
362 3tca_A Amyloid beta A4 precurs 23.2 1.4E+02 0.0047 26.9 6.3 43 3-45 37-79 (291)
363 1c1y_B Proto-onkogene serine/t 22.9 1.5E+02 0.0053 21.2 5.0 42 3-45 4-45 (77)
364 3rui_B Autophagy-related prote 22.9 1.2E+02 0.004 23.8 4.8 58 394-451 50-111 (118)
365 3ge3_C Toluene-4-monooxygenase 22.7 2.3E+02 0.0077 20.7 6.4 59 89-147 17-82 (84)
366 1f2r_I Inhibitor of caspase-ac 22.5 2.6E+02 0.0087 21.2 7.4 68 229-301 19-90 (100)
367 2r2q_A Gamma-aminobutyric acid 22.1 1.6E+02 0.0053 22.7 5.4 44 242-285 47-91 (110)
368 3r8s_T 50S ribosomal protein L 21.7 93 0.0032 23.3 3.8 41 313-353 26-67 (93)
369 4gdk_A Ubiquitin-like protein 21.6 1.4E+02 0.0047 22.2 4.8 35 242-276 23-57 (91)
370 2zjd_A Microtubule-associated 21.6 1.8E+02 0.0062 23.2 5.7 60 166-225 56-120 (130)
371 2zjr_Q 50S ribosomal protein L 21.5 91 0.0031 23.4 3.7 33 389-422 22-54 (95)
372 3au4_A Myosin-X; protein-prote 21.2 1.6E+02 0.0056 29.6 6.9 45 229-273 217-263 (555)
373 3tve_T 50S ribosomal protein L 20.6 1E+02 0.0035 23.0 3.8 33 390-422 21-53 (92)
374 3h9d_A ATG8, microtubule-assoc 20.6 1.3E+02 0.0046 23.5 4.7 43 242-284 51-94 (119)
375 1eo6_A GATE-16, golgi-associat 20.5 1.2E+02 0.0042 23.6 4.5 59 394-452 48-110 (117)
376 4eku_A Protein-tyrosine kinase 20.3 1.6E+02 0.0055 28.3 6.3 51 388-438 35-96 (392)
377 2lte_A Specialized acyl carrie 25.3 22 0.00076 27.2 0.0 73 250-338 27-99 (103)
No 1
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=100.00 E-value=2.9e-35 Score=258.23 Aligned_cols=153 Identities=34% Similarity=0.493 Sum_probs=147.2
Q ss_pred eeeEEEecCCcEEEEEeecCccHHHHHHHhhcccCCCCCCceEE-e-cCeeccCCCcccccccccCceEEEEEE-ecCce
Q 012749 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLR-LRGGM 381 (457)
Q Consensus 305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~-~-~g~~L~d~~~L~~~~i~~~~~l~l~~~-~~~~~ 381 (457)
|+|+|++++|+++++++++++||.+||++|++++|+|+++|+|. | +|+.|+|+.+|++|++.++++++|+.+ .+++|
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~m 82 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEPL 82 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCCE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCcE
Confidence 78999999999999999999999999999999999999999999 9 799999999999999999999999998 48899
Q ss_pred eeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012749 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 382 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 457 (457)
+|+|++.+|+++.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|++|++||.
T Consensus 83 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG~ 158 (159)
T 3rt3_B 83 SILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG 158 (159)
T ss_dssp EEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC---
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999994
No 2
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=100.00 E-value=2.2e-35 Score=259.02 Aligned_cols=152 Identities=34% Similarity=0.508 Sum_probs=147.4
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEe-e-ccEEccCCCccccccccccccceEEEe-ecCce
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLR-LRGGM 77 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~-~-~g~~L~~~~tl~~y~I~~~sti~l~~~-~~~~~ 77 (457)
|+|+|++++|++++++|++++||.++|++|+++.|+|+++|+|+ | +|+.|+|+.+|++|+|.+++++|++++ ++++|
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~m 82 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEPL 82 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCCE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCcE
Confidence 89999999999999999999999999999999999999999999 9 799999999999999999999999999 58999
Q ss_pred EEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCcEEEecCcccCCCCcccccccccCCcceEEEEeecc
Q 012749 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (457)
Q Consensus 78 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~~~ 152 (457)
+|+|++.+|+.+.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.+|++||+.++++||
T Consensus 83 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG 157 (159)
T 3rt3_B 83 SILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157 (159)
T ss_dssp EEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998876
No 3
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=256.86 Aligned_cols=155 Identities=94% Similarity=1.292 Sum_probs=146.7
Q ss_pred cCceeeEEEecCCcEEEEEeecCccHHHHHHHhhcccCCCCCCceEEecCeeccCCCcccccccccCceEEEEEEecCce
Q 012749 302 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 381 (457)
Q Consensus 302 ~~~~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~L~~~~i~~~~~l~l~~~~~~~~ 381 (457)
...|+|+|++++|+++++++++++||.+||++|++++|+|+++|+|.|+|+.|+|+.+|++|++.++++++|..+..+.|
T Consensus 18 ~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~ 97 (172)
T 3u30_A 18 GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 97 (172)
T ss_dssp -CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCE
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 382 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
+|+|++.+|+++.++|++++||.+||.+|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|++|+|||
T Consensus 98 ~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 98 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp EEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred cceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998
No 4
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=257.91 Aligned_cols=152 Identities=96% Similarity=1.322 Sum_probs=145.7
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecCceEEE
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~~~~i~ 80 (457)
|+|||++++|++++++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++++..++|+++
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~~i~ 100 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 100 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccccce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCcEEEecCcccCCCCcccccccccCCcceEEEEeecc
Q 012749 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (457)
Q Consensus 81 vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~~~ 152 (457)
|++.+|+.+.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|+|.++++|||.++++||
T Consensus 101 Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 101 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp EEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred eecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998765
No 5
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=100.00 E-value=1.2e-32 Score=239.78 Aligned_cols=152 Identities=96% Similarity=1.322 Sum_probs=148.3
Q ss_pred eeeEEEecCCcEEEEEeecCccHHHHHHHhhcccCCCCCCceEEecCeeccCCCcccccccccCceEEEEEEecCceeeE
Q 012749 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 384 (457)
Q Consensus 305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~L~~~~i~~~~~l~l~~~~~~~~~i~ 384 (457)
|+|+|+.++|+++++++++++||++||++|++++|+|+++|+|.|+|..|+|+.+|++|++.+++++++..+.++.|+|+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~ 80 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 80 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccccccee
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999888899999
Q ss_pred EEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 385 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 385 v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
|++.+|+++.+++++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++.+|++||
T Consensus 81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998
No 6
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=100.00 E-value=1e-32 Score=240.33 Aligned_cols=152 Identities=96% Similarity=1.322 Sum_probs=148.5
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecCceEEE
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~~~~i~ 80 (457)
|+|+|++.+|++++++|++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++.+..++|+|+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~ 80 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 80 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccccccee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCcEEEecCcccCCCCcccccccccCCcceEEEEeecc
Q 012749 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (457)
Q Consensus 81 vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~~~ 152 (457)
|++.+|+.+.+++++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++||+.++++||
T Consensus 81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999988765
No 7
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=139.18 Aligned_cols=77 Identities=35% Similarity=0.569 Sum_probs=75.6
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCC
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 455 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~G 455 (457)
++|+|+|++.+|+++.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++++|++|
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999998
No 8
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.80 E-value=1.2e-19 Score=141.86 Aligned_cols=77 Identities=56% Similarity=0.917 Sum_probs=73.1
Q ss_pred eeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012749 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 457 (457)
|+|+|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|++|++||.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999995
No 9
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.80 E-value=2.3e-19 Score=138.08 Aligned_cols=79 Identities=24% Similarity=0.386 Sum_probs=71.3
Q ss_pred EEEEecCceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012749 373 LVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 373 l~~~~~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
|+...++.|+|||++..|+++.++|.|++||.+||++|+++.|+||++|+|+|+|++|+|+.||++|+|++|++|+|..
T Consensus 14 ~~~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 14 LVPRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp ------CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred ccCCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 4555678899999999999999999999999999999999999999999999999999999999999999999999864
No 10
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.79 E-value=1.7e-19 Score=138.82 Aligned_cols=70 Identities=23% Similarity=0.433 Sum_probs=68.7
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEE
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~ 70 (457)
|||||+++.|++++++++|+|||.+||++|++++|+|+++|+|+|+|++|+|+.||++|+|.+++|+||.
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 7999999999999999999999999999999999999999999999999999999999999999999985
No 11
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.78 E-value=6.4e-19 Score=133.91 Aligned_cols=76 Identities=57% Similarity=0.952 Sum_probs=72.9
Q ss_pred eeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
|+|+|++.+|+++.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++.+|++||
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998
No 12
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.78 E-value=3.7e-19 Score=136.30 Aligned_cols=77 Identities=18% Similarity=0.425 Sum_probs=74.8
Q ss_pred ceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
.|+|+|++.+|+++.++|++++||.+||++|+++.|+|+++|+|+|+|++|+|+.||++|||++|++|++.+|++||
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999998
No 13
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.78 E-value=4.4e-19 Score=138.93 Aligned_cols=79 Identities=57% Similarity=0.963 Sum_probs=77.0
Q ss_pred cCceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
..+|+|+|++.+|+++.++|++++||.+||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++.+|++||
T Consensus 10 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 88 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG 88 (88)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred CCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999999999998
No 14
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.77 E-value=7.6e-19 Score=137.52 Aligned_cols=88 Identities=28% Similarity=0.519 Sum_probs=72.3
Q ss_pred ccccCceEEEEEEecCceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCC
Q 012749 364 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 443 (457)
Q Consensus 364 ~i~~~~~l~l~~~~~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~ 443 (457)
|..+++++++..+.+..|+|+|++.+|+++.++|++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++||| +
T Consensus 1 g~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~ 79 (88)
T 4eew_A 1 GMEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-G 79 (88)
T ss_dssp --------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-T
T ss_pred CCCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-C
Confidence 456788888888888899999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred CCEEEEEEe
Q 012749 444 ESTLHLVLR 452 (457)
Q Consensus 444 ~~~i~l~~r 452 (457)
|++|+|++|
T Consensus 80 g~~i~lv~R 88 (88)
T 4eew_A 80 GKVIHLVER 88 (88)
T ss_dssp TEEEEEEEC
T ss_pred CcEEEEEEC
Confidence 999999986
No 15
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.77 E-value=7.8e-19 Score=140.17 Aligned_cols=79 Identities=94% Similarity=1.267 Sum_probs=76.1
Q ss_pred cCceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
...|+|+|++.+|+++.++|++++||.+||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|+|.+|++||
T Consensus 20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 4579999999999999999999999999999999999999999999999999999999999999999999999999998
No 16
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=1.4e-18 Score=135.80 Aligned_cols=80 Identities=34% Similarity=0.518 Sum_probs=77.5
Q ss_pred cCceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012749 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 457 (457)
+..|+|+|++.+|+++.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|+|+++++|++.+|++||.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~ 84 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGP 84 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCCS
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999995
No 17
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.77 E-value=8e-19 Score=139.70 Aligned_cols=79 Identities=18% Similarity=0.407 Sum_probs=77.0
Q ss_pred cCceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
+..|+|+|++.+|+++.++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|++|+|++|++||
T Consensus 19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence 4569999999999999999999999999999999999999999999999999999999999999999999999999998
No 18
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=9.3e-19 Score=136.09 Aligned_cols=79 Identities=77% Similarity=1.096 Sum_probs=73.2
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 457 (457)
.+|+|+|++.+|+++.++|++++||.+||++|++.+++|++.|+|+|+|+.|+|+.+|++|+|+++++|++.+|++||.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 80 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGG 80 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC---
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 3699999999999999999999999999999999999999999999999999999999999999999999999999984
No 19
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=1.1e-18 Score=136.47 Aligned_cols=79 Identities=85% Similarity=1.225 Sum_probs=70.5
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 457 (457)
..|+|++++.+|+++.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++.+|++||.
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG~ 86 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 86 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC------
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCC
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999999999994
No 20
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.77 E-value=1.8e-18 Score=131.37 Aligned_cols=76 Identities=95% Similarity=1.320 Sum_probs=74.7
Q ss_pred eeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
|+|+|+..+|+++.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++..|++||
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998
No 21
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.76 E-value=1.4e-18 Score=133.07 Aligned_cols=75 Identities=36% Similarity=0.595 Sum_probs=72.9
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecC
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~ 75 (457)
|+|||++++|++++++|++++||.++|++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++++++|
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999998764
No 22
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=2.3e-18 Score=133.85 Aligned_cols=79 Identities=89% Similarity=1.180 Sum_probs=75.8
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 457 (457)
.+|+|+|++.+|+++.++|++++||.+||++|++.+++|++.|+|+|+|+.|+|+.+|++|+|+++++|++.+|++||.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG~ 80 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGGG 80 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC-
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCCC
Confidence 4699999999999999999999999999999999999999999999999999999999999999999999999999984
No 23
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.76 E-value=2.3e-18 Score=137.12 Aligned_cols=78 Identities=94% Similarity=1.262 Sum_probs=74.2
Q ss_pred ceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012749 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 457 (457)
.|+|+|++.+|+++.++|++++||.+||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|+|++|++||+
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence 389999999999999999999999999999999999999999999999999999999999999999999999999995
No 24
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.6e-19 Score=147.85 Aligned_cols=104 Identities=73% Similarity=0.983 Sum_probs=98.1
Q ss_pred cCceEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCcEEEecCcccCCCCcccccccccCCcceEEEEeecce
Q 012749 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (457)
Q Consensus 74 ~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~~~~ 153 (457)
.+..+|+|++++|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|..++++++
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~ 86 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS 86 (114)
T ss_dssp CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC
T ss_pred CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeee---ecCCceEEEeecCCchHHH
Q 012749 154 QIFVK---TLTGKTITLEVESSDTIDN 177 (457)
Q Consensus 154 ~i~V~---~~~g~~~~~~v~~~~tV~~ 177 (457)
.++++ ...|++++++|.+++||..
T Consensus 87 ~~~~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 87 MGGAADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp CCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred eeeccccccccCceEEEEeccccccCC
Confidence 99998 5578999999999999863
No 25
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.75 E-value=3.2e-18 Score=135.18 Aligned_cols=79 Identities=27% Similarity=0.411 Sum_probs=75.9
Q ss_pred cCceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCC-CcccccCCCCCCEEEEEEecCCC
Q 012749 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~-~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
...|+|+|++..| ++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ .+|++|||++|++|+|++|++||
T Consensus 13 ~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg 91 (94)
T 2kan_A 13 VRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR 91 (94)
T ss_dssp SCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred CCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence 4679999999888 899999999999999999999999999999999999999999 99999999999999999999998
Q ss_pred C
Q 012749 457 F 457 (457)
Q Consensus 457 ~ 457 (457)
.
T Consensus 92 ~ 92 (94)
T 2kan_A 92 A 92 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 26
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.75 E-value=1.9e-18 Score=136.37 Aligned_cols=77 Identities=38% Similarity=0.647 Sum_probs=72.8
Q ss_pred cCceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
...|+|+|++ |+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|++|++||
T Consensus 17 ~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 17 RGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp ---CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred CCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 4579999998 8999999999999999999999999999999999999999999999999999999999999999998
No 27
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.75 E-value=2e-18 Score=134.89 Aligned_cols=78 Identities=36% Similarity=0.590 Sum_probs=72.3
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
.+|+|+|++.+|+++.++|++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|..+++||
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg 80 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 80 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC----
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCC
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999999998
No 28
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=6e-18 Score=132.67 Aligned_cols=79 Identities=37% Similarity=0.617 Sum_probs=76.1
Q ss_pred CceeeEEEeCCC-CEEEE-EecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 379 GGMQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 379 ~~~~i~v~~~~g-~~~~l-~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
..|+|+|+..+| +++.+ +|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+|++|++||
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG 85 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSG 85 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCS
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCC
Confidence 579999999999 79999 5999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 012749 457 F 457 (457)
Q Consensus 457 ~ 457 (457)
.
T Consensus 86 ~ 86 (89)
T 1wy8_A 86 P 86 (89)
T ss_dssp S
T ss_pred C
Confidence 4
No 29
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.74 E-value=5.1e-18 Score=138.42 Aligned_cols=78 Identities=94% Similarity=1.272 Sum_probs=75.4
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
..|+|+|+..+|+++.++|++++||.+||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|+|++|++||
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999999998
No 30
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.74 E-value=1.9e-18 Score=135.89 Aligned_cols=70 Identities=23% Similarity=0.328 Sum_probs=68.7
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEE
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~ 70 (457)
|+|||+++.|++++++|+++|||.+||++|++++|+|+++|+|+|+|++|+|+.||++|+|.+++|+||+
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 7999999999999999999999999999999999999999999999999999999999999999999985
No 31
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.74 E-value=3.2e-18 Score=133.74 Aligned_cols=77 Identities=56% Similarity=0.924 Sum_probs=73.1
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecCce
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 77 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~~~ 77 (457)
|+|+|++++|++++++|++++||.++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++++++++.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999988875
No 32
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.74 E-value=4.4e-18 Score=138.92 Aligned_cols=93 Identities=80% Similarity=1.042 Sum_probs=82.3
Q ss_pred ccccCceEEEEEEe--------cCceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCc
Q 012749 364 NIQKESTLHLVLRL--------RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 435 (457)
Q Consensus 364 ~i~~~~~l~l~~~~--------~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~t 435 (457)
++.+++++++.... ...|+|+|+..+|+.+.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~g~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~t 90 (111)
T 2ojr_A 11 GWIEGDELYIDTNNDGWIEGDELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 90 (111)
T ss_dssp SSCCGGGBCCCTTCSSSCCGGGSSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCB
T ss_pred ceecCCEEEEeecccccccCCCCCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCc
Confidence 34455555555331 2479999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCEEEEEEecCCC
Q 012749 436 LADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 436 L~~~~i~~~~~i~l~~rl~GG 456 (457)
|++|||++|++|+|.+|++||
T Consensus 91 L~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 91 LSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp TTTTTCCTTCEEEEEECCCC-
T ss_pred HHHcCCCCCCEEEEEEeCCCC
Confidence 999999999999999999998
No 33
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=2.3e-18 Score=133.15 Aligned_cols=74 Identities=22% Similarity=0.425 Sum_probs=70.5
Q ss_pred CeEEEEcCCCcEEEEEec--CCCcHHHHHHHH-hhhhCCCCccceEeeccEEccCCCccccccc-cccccceEEEeec
Q 012749 1 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRLR 74 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~--~~dtv~~ik~ki-~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I-~~~sti~l~~~~~ 74 (457)
|+|||++++|++++++|+ ++|||.++|++| ++++|+|+++|+|+|+|++|+|+.+|++|+| .+++++++..++.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~ 79 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPN 79 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCC
Confidence 899999999999999866 999999999999 9999999999999999999999999999999 7999999988754
No 34
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=3.2e-19 Score=146.12 Aligned_cols=104 Identities=73% Similarity=0.983 Sum_probs=98.2
Q ss_pred ecceeeeeeecCCceEEEeecCCchHHHHHHHHhhhhCCCCCceEEEECCeecccCccccccCcCcCcEEEEEEEecCCe
Q 012749 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 229 (457)
Q Consensus 150 ~~~~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~I~~~~~i~l~~~~~~~~ 229 (457)
.+.++|+|++++|+++.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+.+++++.
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~ 86 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS 86 (114)
T ss_dssp CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC
T ss_pred CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEE---ccCCceEEEEeecCccHHH
Q 012749 230 QIFVK---TLTGKTITLEVESSDTIDN 253 (457)
Q Consensus 230 ~i~V~---~~~g~~~~~~v~~~~tV~~ 253 (457)
+++++ +..|++++++|++++||++
T Consensus 87 ~~~~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 87 MGGAADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp CCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred eeeccccccccCceEEEEeccccccCC
Confidence 99988 4579999999999999864
No 35
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.73 E-value=9.4e-18 Score=132.06 Aligned_cols=77 Identities=91% Similarity=1.263 Sum_probs=74.6
Q ss_pred cCceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecC
Q 012749 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 454 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~ 454 (457)
...|+|+|++.+|+++.++|++++||.+||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++++|+|
T Consensus 15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999986
No 36
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.73 E-value=7.8e-18 Score=134.46 Aligned_cols=91 Identities=81% Similarity=1.094 Sum_probs=75.1
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecCceEEE
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~~~~i~ 80 (457)
|+|+|++++|++++++|++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.++++++++.+..++.+++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~ 80 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPN 80 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC----
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcEEEE
Q 012749 81 VKTLTGKTITL 91 (457)
Q Consensus 81 vk~~~g~~~~l 91 (457)
.++.+|+.-.+
T Consensus 81 ~~~v~~~~~~~ 91 (98)
T 1yx5_B 81 SSSVDKLAAAL 91 (98)
T ss_dssp -----------
T ss_pred cccCCCchhhh
Confidence 99998765443
No 37
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.73 E-value=5.3e-18 Score=130.93 Aligned_cols=73 Identities=33% Similarity=0.473 Sum_probs=70.9
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEE-ccCCCccccccccccccceEEEee
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~-L~~~~tl~~y~I~~~sti~l~~~~ 73 (457)
|+|||++++|++++++|++++||.++|++|+++.|+|+++|+|+|+|+. |+|+.+|++|+|.+++++++++++
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999 999999999999999999998764
No 38
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.73 E-value=1.4e-17 Score=130.92 Aligned_cols=78 Identities=32% Similarity=0.549 Sum_probs=74.4
Q ss_pred cCceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
+..|+|+|++.+|+++.++|++++||.+||.+|++++|+|++.|+|+|+|+.|+|+.+|++||| +|++|+|++|++++
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence 3579999999999999999999999999999999999999999999999999999999999999 89999999998876
No 39
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.72 E-value=7.8e-18 Score=131.72 Aligned_cols=87 Identities=29% Similarity=0.523 Sum_probs=71.8
Q ss_pred ccccccceEEEeecCceEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCcEEEecCcccCCCCcccccccccC
Q 012749 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 140 (457)
Q Consensus 61 I~~~sti~l~~~~~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~ 140 (457)
...++++++..+....|+|+|++.+|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+| +|
T Consensus 2 ~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g 80 (88)
T 4eew_A 2 MEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GG 80 (88)
T ss_dssp -------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TT
T ss_pred CCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CC
Confidence 34578889988888899999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred CcceEEEE
Q 012749 141 STLHLVLR 148 (457)
Q Consensus 141 s~i~l~~~ 148 (457)
++||++.|
T Consensus 81 ~~i~lv~R 88 (88)
T 4eew_A 81 KVIHLVER 88 (88)
T ss_dssp EEEEEEEC
T ss_pred cEEEEEEC
Confidence 99999864
No 40
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.72 E-value=8.4e-18 Score=135.26 Aligned_cols=75 Identities=29% Similarity=0.437 Sum_probs=71.9
Q ss_pred CeEEEEcCCCc-EEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccc-------cccceEEEe
Q 012749 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR 72 (457)
Q Consensus 1 ~~i~~~~~~g~-~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~-------~sti~l~~~ 72 (457)
|.||++...++ |++++++++|||.+||++|++++|+|+++|+|+|+|++|+|++||++|+|.+ ++|+||+++
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 89999999888 8899999999999999999999999999999999999999999999999999 999999998
Q ss_pred ecC
Q 012749 73 LRG 75 (457)
Q Consensus 73 ~~~ 75 (457)
..+
T Consensus 81 ~~~ 83 (118)
T 4ajy_B 81 ADD 83 (118)
T ss_dssp CSS
T ss_pred cCC
Confidence 644
No 41
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.72 E-value=2.2e-17 Score=131.84 Aligned_cols=77 Identities=95% Similarity=1.291 Sum_probs=74.7
Q ss_pred eeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012749 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 457 (457)
|+|+|+..+|+++.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++..|++||.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~ 77 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGR 77 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999984
No 42
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.72 E-value=8e-18 Score=136.15 Aligned_cols=73 Identities=29% Similarity=0.439 Sum_probs=69.9
Q ss_pred CeEEEEcCCCc-EEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccc-------ccccceEEEe
Q 012749 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR 72 (457)
Q Consensus 1 ~~i~~~~~~g~-~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~-------~~sti~l~~~ 72 (457)
|+|||+...|+ +++++|++++||.+||++|++++|||+++|+|+|+|++|+|++||++|+|. ++||+||+++
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 89999999887 699999999999999999999999999999999999999999999999999 7999999998
Q ss_pred e
Q 012749 73 L 73 (457)
Q Consensus 73 ~ 73 (457)
.
T Consensus 81 ~ 81 (118)
T 2fnj_B 81 A 81 (118)
T ss_dssp S
T ss_pred C
Confidence 3
No 43
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.71 E-value=9.6e-18 Score=128.40 Aligned_cols=76 Identities=18% Similarity=0.448 Sum_probs=72.9
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecCc
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~~ 76 (457)
|+|+|++++|++++++|++++||.++|++|+++.|+|+++|+|+|+|+.|+|+.|+++|+|.+++++|++++.+++
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999987653
No 44
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.71 E-value=2e-17 Score=127.74 Aligned_cols=74 Identities=32% Similarity=0.472 Sum_probs=71.7
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCee-cCCCCcccccCCCCCCEEEEEEe
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~-L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
..|+|+|++..|+++.++|++++||++||++|++.+|+|+++|+|+|+|+. |+|+.+|++|||++|++|+|++|
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 469999999999999999999999999999999999999999999999999 99999999999999999999886
No 45
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.71 E-value=2.8e-17 Score=144.11 Aligned_cols=77 Identities=96% Similarity=1.293 Sum_probs=74.2
Q ss_pred eeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012749 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 457 (457)
|+|+|++.+|+++.++|++++||.+||.+|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|++|++||.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~ 77 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC--
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999995
No 46
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=1.4e-17 Score=130.89 Aligned_cols=73 Identities=22% Similarity=0.294 Sum_probs=70.2
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
+.|+|+|+++.|+++.++|.|++||.+||++|++++|+|+++|+|+|+|++|+|+.||++|||+++++|+|+.
T Consensus 27 ~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 27 TMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp CEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 3599999999999999999999999999999999999999999999999999999999999999999999874
No 47
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=3.7e-17 Score=124.76 Aligned_cols=75 Identities=36% Similarity=0.657 Sum_probs=71.5
Q ss_pred CceeeEEEeCCCCEE-EEE-ecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 012749 379 GGMQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 453 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~-~l~-v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl 453 (457)
+.|+|+|++.+|+++ .++ |++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++.+|+
T Consensus 1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 369999999999985 999 999999999999999999999999999999999999999999999999999999986
No 48
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.70 E-value=2.1e-17 Score=134.90 Aligned_cols=79 Identities=33% Similarity=0.468 Sum_probs=76.5
Q ss_pred cCceeeEEEeC---CCCEEEEEecC-CchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 012749 378 RGGMQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 453 (457)
Q Consensus 378 ~~~~~i~v~~~---~g~~~~l~v~~-~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl 453 (457)
+.+|+|+|++. +|+.+.++|++ ++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+|++|+
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 46899999998 88999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 012749 454 RGG 456 (457)
Q Consensus 454 ~GG 456 (457)
+||
T Consensus 105 ~GG 107 (111)
T 1we6_A 105 RSG 107 (111)
T ss_dssp CCS
T ss_pred CCC
Confidence 999
No 49
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.70 E-value=1.7e-17 Score=134.17 Aligned_cols=75 Identities=28% Similarity=0.431 Sum_probs=68.5
Q ss_pred eeeEEEeCCCC-EEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCC-------CCCEEEEEEe
Q 012749 381 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR 452 (457)
Q Consensus 381 ~~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~-------~~~~i~l~~r 452 (457)
|++|++...++ ++.++|.+++||++||.+|++++|||+++|+|+|+|+.|+|++||++|||+ .+++|+|++|
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 56666666665 589999999999999999999999999999999999999999999999999 7999999999
Q ss_pred cCCC
Q 012749 453 LRGG 456 (457)
Q Consensus 453 l~GG 456 (457)
.||
T Consensus 81 -~~g 83 (118)
T 2fnj_B 81 -ADD 83 (118)
T ss_dssp -SSS
T ss_pred -CCC
Confidence 665
No 50
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.70 E-value=1.6e-17 Score=132.22 Aligned_cols=76 Identities=18% Similarity=0.448 Sum_probs=73.5
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecCc
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~~ 76 (457)
|+|+|++++|++++++|.+++||.+||++|+++.|+|+++|+|+|+|++|+|++||++|+|.+++++|++++++++
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999987653
No 51
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=3.2e-17 Score=129.52 Aligned_cols=78 Identities=29% Similarity=0.500 Sum_probs=74.0
Q ss_pred CceeeEEEeCCCC--EEEEEecCCchHHHHHHHHhhhc--CCCCCCeEEEEcCeecCCCCccccc--CCCCCCEEEEEEe
Q 012749 379 GGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLR 452 (457)
Q Consensus 379 ~~~~i~v~~~~g~--~~~l~v~~~~tV~~lK~~i~~~~--~ip~~~q~l~~~g~~L~d~~tL~~~--~i~~~~~i~l~~r 452 (457)
..|+|+|++.+|+ .+.++|++++||.+||++|++.+ ++|+++|+|+|+|+.|+|+.+|++| +|+++++|+|++|
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~ 85 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCN 85 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECC
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeC
Confidence 4699999999888 67777889999999999999999 9999999999999999999999999 9999999999999
Q ss_pred cCCC
Q 012749 453 LRGG 456 (457)
Q Consensus 453 l~GG 456 (457)
++||
T Consensus 86 ~~gg 89 (93)
T 1wgd_A 86 VKSG 89 (93)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9998
No 52
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.70 E-value=5.1e-17 Score=123.28 Aligned_cols=76 Identities=57% Similarity=0.952 Sum_probs=72.4
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecCc
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~~ 76 (457)
|+|+|++++|++++++|++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++.+++
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999887653
No 53
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.53 E-value=1.2e-18 Score=132.41 Aligned_cols=75 Identities=33% Similarity=0.588 Sum_probs=73.6
Q ss_pred eeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCC
Q 012749 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 455 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~G 455 (457)
|+|+|++.+|+++.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++++|+||
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999998
No 54
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.70 E-value=3.7e-17 Score=128.45 Aligned_cols=74 Identities=34% Similarity=0.585 Sum_probs=71.5
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecC
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~ 75 (457)
|+|||++++|++++++|.+++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+| +++++|++++...
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~ 79 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPP 79 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999 8999999998654
No 55
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.69 E-value=3.5e-17 Score=128.03 Aligned_cols=76 Identities=58% Similarity=0.975 Sum_probs=73.4
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecCc
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~~ 76 (457)
|+|+|++++|++++++|++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 88 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG 88 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999987753
No 56
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.69 E-value=4.6e-17 Score=144.04 Aligned_cols=81 Identities=90% Similarity=1.184 Sum_probs=78.2
Q ss_pred ecCceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 377 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 377 ~~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
....|+|+|++.+|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|++|++||
T Consensus 102 d~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG 181 (189)
T 3q3f_A 102 DHYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 181 (189)
T ss_dssp CCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCC
T ss_pred cccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCC
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 012749 457 F 457 (457)
Q Consensus 457 ~ 457 (457)
.
T Consensus 182 ~ 182 (189)
T 3q3f_A 182 G 182 (189)
T ss_dssp C
T ss_pred C
Confidence 5
No 57
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=4.2e-17 Score=124.48 Aligned_cols=73 Identities=36% Similarity=0.643 Sum_probs=70.6
Q ss_pred CeEEEEcCCCcEE-EEE-ecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEee
Q 012749 1 MQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g~~~-~~~-v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~ 73 (457)
|+|+|++.+|+++ +++ |++++||.++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|+++++
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 8999999999995 999 999999999999999999999999999999999999999999999999999999875
No 58
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.69 E-value=5.4e-17 Score=130.56 Aligned_cols=76 Identities=29% Similarity=0.427 Sum_probs=70.3
Q ss_pred eeeEEEeCCCC-EEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCC-------CCEEEEEEe
Q 012749 381 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR 452 (457)
Q Consensus 381 ~~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~-------~~~i~l~~r 452 (457)
|.+|++...++ ++.++|.+++||.+||.+|++++|+||++|||+|+|+.|+|++||++|||++ +++|+|++|
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 66788776666 7888999999999999999999999999999999999999999999999999 999999999
Q ss_pred cCCC
Q 012749 453 LRGG 456 (457)
Q Consensus 453 l~GG 456 (457)
..|+
T Consensus 81 ~~~~ 84 (118)
T 4ajy_B 81 ADDT 84 (118)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 8554
No 59
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.69 E-value=4.9e-17 Score=127.92 Aligned_cols=74 Identities=92% Similarity=1.261 Sum_probs=71.8
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeec
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~ 74 (457)
|+|+|++.+|++++++|.+++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998753
No 60
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.69 E-value=4.9e-17 Score=133.11 Aligned_cols=76 Identities=26% Similarity=0.458 Sum_probs=70.8
Q ss_pred CeEEEEcCCCcEE-EEEecCCCcHHHHHHHH-----hhhhCCCC--ccceEeeccEEccCCCcccccccccc------cc
Q 012749 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKE------ST 66 (457)
Q Consensus 1 ~~i~~~~~~g~~~-~~~v~~~dtv~~ik~ki-----~~~~gip~--~~q~l~~~g~~L~~~~tl~~y~I~~~------st 66 (457)
|+|+|++++|+.+ +++++++|||.+||++| ++++|+|+ ++|+|+|+|++|+|++||++|+|..+ ++
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t 96 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT 96 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence 7899999999988 79999999999999999 77889997 89999999999999999999999988 78
Q ss_pred ceEEEeecCc
Q 012749 67 LHLVLRLRGG 76 (457)
Q Consensus 67 i~l~~~~~~~ 76 (457)
+|++++++++
T Consensus 97 mhlVlrl~g~ 106 (126)
T 1se9_A 97 MHVIIQAPVT 106 (126)
T ss_dssp EEEEECCCSS
T ss_pred EEEEeccCCc
Confidence 9999988764
No 61
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=5.8e-17 Score=126.53 Aligned_cols=76 Identities=87% Similarity=1.271 Sum_probs=70.2
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecCc
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~~ 76 (457)
|+|+|++++|++++++|++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.++++++++++++++
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG 85 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 85 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-----
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999887764
No 62
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=6.3e-17 Score=129.03 Aligned_cols=76 Identities=97% Similarity=1.333 Sum_probs=73.6
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecCc
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~~ 76 (457)
|+|+|++++|++++++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987764
No 63
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1e-16 Score=123.22 Aligned_cols=77 Identities=39% Similarity=0.674 Sum_probs=73.7
Q ss_pred cCceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecC
Q 012749 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 454 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~ 454 (457)
...|+|+|+..+|+.+.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++.+|++
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 81 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKPL 81 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999874
No 64
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.68 E-value=3.4e-17 Score=127.91 Aligned_cols=76 Identities=37% Similarity=0.616 Sum_probs=70.7
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecCc
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~~ 76 (457)
|+|+|++++|++++++|++++||.++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++.+..++
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg 80 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 80 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC----
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999887654
No 65
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=1e-16 Score=128.04 Aligned_cols=78 Identities=33% Similarity=0.432 Sum_probs=74.7
Q ss_pred cCceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
...|+|+|+...|+ +.++|++++||.+||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|+|+.|++||
T Consensus 20 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~ 97 (100)
T 1yqb_A 20 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 97 (100)
T ss_dssp TTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCS
T ss_pred CCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCC
Confidence 46799999999886 7999999999999999999999999999999999999999999999999999999999999997
No 66
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.68 E-value=1.1e-16 Score=127.29 Aligned_cols=79 Identities=91% Similarity=1.240 Sum_probs=74.0
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecCceEE
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 79 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~~~~i 79 (457)
|+|+|++++|++++++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++...
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~~~ 80 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYADL 80 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC----
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCCcc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999888664
No 67
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=5.9e-17 Score=125.22 Aligned_cols=74 Identities=22% Similarity=0.408 Sum_probs=69.5
Q ss_pred ceeeEEEeCCCCEEEEEec--CCchHHHHHHHH-hhhcCCCCCCeEEEEcCeecCCCCcccccCC-CCCCEEEEEEec
Q 012749 380 GMQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 453 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~--~~~tV~~lK~~i-~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i-~~~~~i~l~~rl 453 (457)
.|+|+|++..|++++++|+ +++||.+||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| .+|++|+|.++.
T Consensus 1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 1 MVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CCEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred CEEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 3899999999999999866 999999999999 9999999999999999999999999999999 699999998763
No 68
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=9.2e-17 Score=124.72 Aligned_cols=76 Identities=80% Similarity=1.167 Sum_probs=72.6
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecCc
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~~ 76 (457)
|+|+|++++|++++++|++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 79 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGG 79 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987754
No 69
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=9.1e-17 Score=126.31 Aligned_cols=66 Identities=23% Similarity=0.355 Sum_probs=64.0
Q ss_pred CCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 390 g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
++.++++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++| ++++++|.
T Consensus 29 ~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg~ 94 (100)
T 1wju_A 29 DRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQS 94 (100)
T ss_dssp SSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCCC
T ss_pred CcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECCC
Confidence 7789999999999999999999999999999999999999999999999999999999 99999984
No 70
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=9.8e-17 Score=130.27 Aligned_cols=74 Identities=24% Similarity=0.419 Sum_probs=68.5
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhh------hhCC--CCccceEeeccEEccCCCcccccccccc--ccceEE
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--STLHLV 70 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~------~~gi--p~~~q~l~~~g~~L~~~~tl~~y~I~~~--sti~l~ 70 (457)
|+|+|++++|++++++|++++||.+||++|++ ++|+ |+++|+|+|+|++|+|++||++|+|..+ +++||+
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLv 96 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 96 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 78999999999999999999999999999999 7786 6999999999999999999999999755 789999
Q ss_pred Eeec
Q 012749 71 LRLR 74 (457)
Q Consensus 71 ~~~~ 74 (457)
+++.
T Consensus 97 lr~~ 100 (116)
T 1wgh_A 97 ARET 100 (116)
T ss_dssp ECSS
T ss_pred ccCC
Confidence 8765
No 71
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=4.9e-17 Score=129.62 Aligned_cols=79 Identities=24% Similarity=0.376 Sum_probs=73.9
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCC---------------CCeEEEEcCeecC-CCCcccccCCC
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---------------DQQRLIFAGKQLE-DGRTLADYNIQ 442 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~---------------~~q~l~~~g~~L~-d~~tL~~~~i~ 442 (457)
..|+|+|++++|++++++|.+++||++||++|++++++|+ ++|+|+|+|+.|. |++||++|||+
T Consensus 6 ~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~ 85 (105)
T 1v2y_A 6 SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIR 85 (105)
T ss_dssp CSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCC
T ss_pred CcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCC
Confidence 4699999999999999999999999999999999999988 4679999999996 66899999999
Q ss_pred CCCEEEEEEecCCCC
Q 012749 443 KESTLHLVLRLRGGF 457 (457)
Q Consensus 443 ~~~~i~l~~rl~GG~ 457 (457)
+|++|+++.|++|.+
T Consensus 86 ~g~~l~lv~~lr~~~ 100 (105)
T 1v2y_A 86 NRDEVSFIKKLGQKS 100 (105)
T ss_dssp SSEEEEEEECSCSCC
T ss_pred CCCEEEEEehhccCC
Confidence 999999999999853
No 72
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.67 E-value=1.6e-16 Score=130.03 Aligned_cols=80 Identities=25% Similarity=0.442 Sum_probs=74.4
Q ss_pred ecCceeeEEEeCCCCEE-EEEecCCchHHHHHHHH-----hhhcCCCC--CCeEEEEcCeecCCCCcccccCCCCC----
Q 012749 377 LRGGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKE---- 444 (457)
Q Consensus 377 ~~~~~~i~v~~~~g~~~-~l~v~~~~tV~~lK~~i-----~~~~~ip~--~~q~l~~~g~~L~d~~tL~~~~i~~~---- 444 (457)
....|+|++++.+|+.+ .+++++++||++||++| ++++|+|+ ++|+|+|.|+.|+|+.||++|+|+.|
T Consensus 13 ~~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~ 92 (126)
T 1se9_A 13 VHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAG 92 (126)
T ss_dssp SCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTT
T ss_pred hcccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccC
Confidence 34679999999999888 79999999999999999 67789997 89999999999999999999999998
Q ss_pred --CEEEEEEecCCC
Q 012749 445 --STLHLVLRLRGG 456 (457)
Q Consensus 445 --~~i~l~~rl~GG 456 (457)
++++|++|++||
T Consensus 93 ~v~tmhlVlrl~g~ 106 (126)
T 1se9_A 93 AVTTMHVIIQAPVT 106 (126)
T ss_dssp CCEEEEEEECCCSS
T ss_pred CcEEEEEEeccCCc
Confidence 789999999997
No 73
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.67 E-value=9.9e-17 Score=126.59 Aligned_cols=75 Identities=28% Similarity=0.461 Sum_probs=72.0
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCC-CccccccccccccceEEEeecCc
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~-~tl~~y~I~~~sti~l~~~~~~~ 76 (457)
|+|||++++| +++++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+ .+|++|+|.++++++++++++++
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg 91 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR 91 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence 7899999988 999999999999999999999999999999999999999999 99999999999999999988764
No 74
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.67 E-value=1.8e-16 Score=120.21 Aligned_cols=76 Identities=95% Similarity=1.320 Sum_probs=73.4
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecCc
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~~ 76 (457)
|+|+|++.+|+++++++++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987653
No 75
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=6.5e-17 Score=128.60 Aligned_cols=78 Identities=27% Similarity=0.319 Sum_probs=75.2
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 457 (457)
..|+|+|+.. |+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.|++||.
T Consensus 16 ~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g~ 93 (96)
T 1wx8_A 16 RIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSGP 93 (96)
T ss_dssp CEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSCS
T ss_pred CcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCCC
Confidence 5689999998 99999999999999999999999999999999999999999999999999999999999999999983
No 76
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.67 E-value=1.2e-16 Score=140.04 Aligned_cols=125 Identities=66% Similarity=0.878 Sum_probs=95.7
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecCceEEE
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~~~~i~ 80 (457)
|||+|++++|++++++|++++||.++|++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++++++++.+-.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~k~~ 80 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGGET 80 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC---CC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEeccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887766
Q ss_pred EEccC-Cc--EEEEEEcCCCCHHHHHHHHhhhhCCCCCCcEEEecCcccCC
Q 012749 81 VKTLT-GK--TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 128 (457)
Q Consensus 81 vk~~~-g~--~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d 128 (457)
|+... |. .-.+.+.++.++.+-.+.+.-.. .+..+..|+-+-|.+
T Consensus 81 vkfs~~Gd~g~~~i~l~~~~~~~~~~~~~~i~~---~~~~~~~fsl~yl~~ 128 (169)
T 3l0w_B 81 IKFVADGDIGSGSVIIKPFVDMEHPETSIKLEM---DQPVDLTFGAKYLLD 128 (169)
T ss_dssp EEEEEECSSCEEEEEECCBCCSSCGGGCBEEEE---SSCEEEEEEHHHHHH
T ss_pred ccccccCcccceeEEEecCCCCCCcccceEEec---CCcceEEEhHHHHHH
Confidence 66532 32 34566666665532222111111 123456676666654
No 77
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=1.2e-16 Score=124.74 Aligned_cols=76 Identities=34% Similarity=0.532 Sum_probs=73.7
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecCc
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~~ 76 (457)
|+|+|++++|++++++|++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG 83 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSG 83 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999988765
No 78
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.67 E-value=3.1e-16 Score=121.72 Aligned_cols=76 Identities=29% Similarity=0.501 Sum_probs=71.6
Q ss_pred cCceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhh---cCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 012749 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 453 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~---~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl 453 (457)
+..|+|+|++.+|+.+.++|++++||++||++|++. +|+|+++|+|+|+|+.|+|+.+|++|||++|++|++..+.
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence 467999999999999999999999999999999998 8999999999999999999999999999999999998764
No 79
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.67 E-value=4.2e-17 Score=144.24 Aligned_cols=82 Identities=91% Similarity=1.230 Sum_probs=79.9
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecCceEEE
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~~~~i~ 80 (457)
|||||++++|++++++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++++++++..+|
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~~~f 185 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGQTF 185 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCCCCC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCCcce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred EE
Q 012749 81 VK 82 (457)
Q Consensus 81 vk 82 (457)
||
T Consensus 186 vk 187 (189)
T 3q3f_A 186 TK 187 (189)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 80
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.66 E-value=2.4e-16 Score=129.49 Aligned_cols=79 Identities=29% Similarity=0.561 Sum_probs=72.9
Q ss_pred CceeeEEEeC----------CCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEE
Q 012749 379 GGMQIFVKTL----------TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLH 448 (457)
Q Consensus 379 ~~~~i~v~~~----------~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~ 448 (457)
.+++|.|+.. +|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~ 103 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIH 103 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEE
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEE
Confidence 4566666654 578999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCC
Q 012749 449 LVLRLRGGF 457 (457)
Q Consensus 449 l~~rl~GG~ 457 (457)
|++|++||.
T Consensus 104 lv~rl~GGk 112 (115)
T 1we7_A 104 LALKERSGP 112 (115)
T ss_dssp EEECCCSCC
T ss_pred EEEEcCCCC
Confidence 999999994
No 81
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=4.7e-16 Score=123.21 Aligned_cols=75 Identities=29% Similarity=0.573 Sum_probs=71.5
Q ss_pred eeeEEEeCCCCEEEEEecCCchHHHHHHHHhhh---cCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCC
Q 012749 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 455 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~---~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~G 455 (457)
|+|+|++.+|+.+.++|++++||++||.+|++. +|+|+++|+|+|+|+.|+|+.+|++|||++|++|++..+...
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~ 78 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCC
Confidence 789999999999999999999999999999999 899999999999999999999999999999999999987543
No 82
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.66 E-value=1.6e-16 Score=125.66 Aligned_cols=72 Identities=21% Similarity=0.440 Sum_probs=67.9
Q ss_pred CeEEEEcCCCcEEEE--EecCCCcHHHHHHHH-hhhhCCCCccceEeeccEEccCCCccccccc-cccccceEEEe
Q 012749 1 MQIFVKTLTGKTITL--EVESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR 72 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~--~v~~~dtv~~ik~ki-~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I-~~~sti~l~~~ 72 (457)
|+|+|++++|++|++ +|.+++||.++|++| +++.|+|+++|+|+|+|+.|+|+.+|++|+| .++++++++++
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvs 95 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK 95 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEe
Confidence 799999999998887 555999999999999 9999999999999999999999999999999 99999999875
No 83
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=2.1e-16 Score=122.69 Aligned_cols=76 Identities=92% Similarity=1.254 Sum_probs=73.5
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecCc
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~~ 76 (457)
|+|+|++++|++++++|++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987754
No 84
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=4.5e-17 Score=129.83 Aligned_cols=76 Identities=24% Similarity=0.385 Sum_probs=70.7
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCc---------------cceEeeccEEcc-CCCcccccccccc
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD---------------QQRLIFAGKQLE-DGRTLADYNIQKE 64 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~---------------~q~l~~~g~~L~-~~~tl~~y~I~~~ 64 (457)
|+|+|++++|++++++|++++||.+||++|++++|+|+. +|+|+|+|+.|. |+.||++|+|.++
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~g 87 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNR 87 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSS
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCCC
Confidence 899999999999999999999999999999999999884 569999999996 6799999999999
Q ss_pred ccceEEEeecCc
Q 012749 65 STLHLVLRLRGG 76 (457)
Q Consensus 65 sti~l~~~~~~~ 76 (457)
+++|+++++++.
T Consensus 88 ~~l~lv~~lr~~ 99 (105)
T 1v2y_A 88 DEVSFIKKLGQK 99 (105)
T ss_dssp EEEEEEECSCSC
T ss_pred CEEEEEehhccC
Confidence 999999987653
No 85
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.66 E-value=7.4e-18 Score=141.19 Aligned_cols=77 Identities=96% Similarity=1.320 Sum_probs=0.5
Q ss_pred eeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012749 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 457 (457)
|+|+|++.+|+++.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.||++|||++|++|+|++|++||.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~ 77 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 77 (128)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999994
No 86
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.66 E-value=1.6e-16 Score=125.25 Aligned_cols=74 Identities=36% Similarity=0.620 Sum_probs=71.3
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecCc
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~~ 76 (457)
|+|+|++ |++++++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++++++++
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 8999999 8999999999999999999999999999999999999999999999999999999999999988764
No 87
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=2.1e-16 Score=123.79 Aligned_cols=76 Identities=37% Similarity=0.627 Sum_probs=72.9
Q ss_pred CeEEEEcCCC-cEEEE-EecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecCc
Q 012749 1 MQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g-~~~~~-~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~~ 76 (457)
|+|+|++++| +++++ +|.+++||.++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG 85 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSG 85 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCS
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCC
Confidence 8999999999 79999 5999999999999999999999999999999999999999999999999999999988765
No 88
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.47 E-value=8.2e-18 Score=127.76 Aligned_cols=75 Identities=33% Similarity=0.588 Sum_probs=72.9
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecC
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~ 75 (457)
|+|||++++|++++++|++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|+++++++
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 899999999999999999999999999999999999999999999999999999999999999999999998764
No 89
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=4.1e-16 Score=129.52 Aligned_cols=78 Identities=29% Similarity=0.350 Sum_probs=71.1
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 457 (457)
..|+|+|++. |+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.+++||.
T Consensus 31 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~ 108 (125)
T 1j8c_A 31 KIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNS 108 (125)
T ss_dssp CCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-----
T ss_pred CcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCC
Confidence 4699999998 99999999999999999999999999999999999999999999999999999999999999999983
No 90
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.6e-16 Score=128.34 Aligned_cols=74 Identities=22% Similarity=0.437 Sum_probs=70.3
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeec
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~ 74 (457)
|+|+|++++|++++++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++++..
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~ 75 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQK 75 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC-
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998643
No 91
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.65 E-value=2.9e-16 Score=127.93 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=73.2
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecCc
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~~ 76 (457)
|+|+|++++|++++++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999988763
No 92
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.6e-16 Score=127.12 Aligned_cols=73 Identities=22% Similarity=0.431 Sum_probs=70.3
Q ss_pred eeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 012749 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 453 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl 453 (457)
|+|+|++.+|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|.++.
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~ 74 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQ 74 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999874
No 93
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.65 E-value=1.1e-17 Score=143.19 Aligned_cols=77 Identities=96% Similarity=1.293 Sum_probs=0.0
Q ss_pred eeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012749 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 457 (457)
|+|+|++.+|+++.++|++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|++|++||.
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGg 77 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (152)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999993
No 94
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=3e-16 Score=125.97 Aligned_cols=78 Identities=21% Similarity=0.397 Sum_probs=73.3
Q ss_pred CceeeEEEeCCC----CEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCC-CcccccCCCCCCEEEEEEec
Q 012749 379 GGMQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRL 453 (457)
Q Consensus 379 ~~~~i~v~~~~g----~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~-~tL~~~~i~~~~~i~l~~rl 453 (457)
..|+|+|++.++ +++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+ .||++|||++|++|+|..+.
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~ 85 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD 85 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence 358999998754 7999999999999999999999999999999999999999988 69999999999999999999
Q ss_pred CCC
Q 012749 454 RGG 456 (457)
Q Consensus 454 ~GG 456 (457)
+||
T Consensus 86 ~gg 88 (102)
T 1v5o_A 86 NVG 88 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 998
No 95
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=5.8e-16 Score=125.18 Aligned_cols=79 Identities=27% Similarity=0.449 Sum_probs=74.9
Q ss_pred cCceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
...|+|+|++..|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.+...+
T Consensus 21 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~ 99 (106)
T 1ttn_A 21 GYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQ 99 (106)
T ss_dssp CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSC
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 4569999999999999999999999999999999999999999999999999999999999999999999999987653
No 96
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=4.9e-16 Score=125.74 Aligned_cols=77 Identities=34% Similarity=0.442 Sum_probs=73.9
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
..|+|+|+...|+ +.++|++++||.+||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|+|..|++||
T Consensus 16 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 16 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 92 (106)
T ss_dssp SEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCC
T ss_pred ceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 4589999998886 7999999999999999999999999999999999999999999999999999999999999997
No 97
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.64 E-value=6.3e-16 Score=122.18 Aligned_cols=75 Identities=20% Similarity=0.428 Sum_probs=69.5
Q ss_pred cCceeeEEEeCCCCEEEE--EecCCchHHHHHHHH-hhhcCCCCCCeEEEEcCeecCCCCcccccCC-CCCCEEEEEEe
Q 012749 378 RGGMQIFVKTLTGKTITL--EVESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR 452 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l--~v~~~~tV~~lK~~i-~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i-~~~~~i~l~~r 452 (457)
...|+|+|++..|+++++ +|++++||.+||++| ++..|+|+++|+|+|+|+.|+|+.+|++||| ++|++|++.++
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvs 95 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK 95 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEEC
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEe
Confidence 467999999999998777 566999999999999 9899999999999999999999999999999 99999999875
No 98
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.64 E-value=7.7e-16 Score=117.07 Aligned_cols=71 Identities=34% Similarity=0.574 Sum_probs=68.8
Q ss_pred eeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 012749 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
|+|+|++ +|+++.++|++++||.+||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++..+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 8999999 8999999999999999999999999999999999999999999999999999999999999875
No 99
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=6.3e-16 Score=125.50 Aligned_cols=79 Identities=23% Similarity=0.350 Sum_probs=71.6
Q ss_pred cCceeeEEEeCCCCEEEEEecCCchHHHHHHHHhh------hcCC--CCCCeEEEEcCeecCCCCcccccCCCCC--CEE
Q 012749 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--STL 447 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~------~~~i--p~~~q~l~~~g~~L~d~~tL~~~~i~~~--~~i 447 (457)
...|+|+|++..|++++++|++++||++||++|++ ++++ |+++|+|+|.|+.|+|+.||++|+|..+ ++|
T Consensus 14 ~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tl 93 (116)
T 1wgh_A 14 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 93 (116)
T ss_dssp SSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 35699999999999999999999999999999999 6675 6999999999999999999999999766 678
Q ss_pred EEEEecCCC
Q 012749 448 HLVLRLRGG 456 (457)
Q Consensus 448 ~l~~rl~GG 456 (457)
||++|+.+.
T Consensus 94 hLvlr~~~~ 102 (116)
T 1wgh_A 94 HLVARETLP 102 (116)
T ss_dssp EEEECSSCS
T ss_pred EEEccCCCC
Confidence 999887753
No 100
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=6.2e-16 Score=122.50 Aligned_cols=73 Identities=30% Similarity=0.597 Sum_probs=70.5
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhh---hCCCCccceEeeccEEccCCCccccccccccccceEEEee
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~---~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~ 73 (457)
|+|+|++++|++++++|++++||.++|++|+++ .|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++.+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~ 76 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 76 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESS
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeC
Confidence 899999999999999999999999999999999 8999999999999999999999999999999999998854
No 101
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.64 E-value=9.8e-16 Score=122.59 Aligned_cols=80 Identities=30% Similarity=0.369 Sum_probs=74.4
Q ss_pred EecCceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCC
Q 012749 376 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 455 (457)
Q Consensus 376 ~~~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~G 455 (457)
+....|+|+|+.. |+.+.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|+|..++++
T Consensus 21 ~~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 21 GHPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp --CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred CCCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 3456799999998 889999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C
Q 012749 456 G 456 (457)
Q Consensus 456 G 456 (457)
.
T Consensus 100 ~ 100 (101)
T 2klc_A 100 R 100 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 102
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.63 E-value=3.1e-16 Score=129.24 Aligned_cols=75 Identities=24% Similarity=0.378 Sum_probs=69.2
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhh------hhCCC--CccceEeeccEEccCCCccccccccccc--cceEE
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKES--TLHLV 70 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~------~~gip--~~~q~l~~~g~~L~~~~tl~~y~I~~~s--ti~l~ 70 (457)
|+|+|++++|++++++|++++||.+||++|++ ++|+| +++|+|+|+|+.|+|++||++|+|..++ ++|++
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv 97 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 97 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 68999999999999999999999999999999 88985 8999999999999999999999998655 78999
Q ss_pred EeecC
Q 012749 71 LRLRG 75 (457)
Q Consensus 71 ~~~~~ 75 (457)
+++..
T Consensus 98 ~r~~~ 102 (125)
T 2gow_A 98 ARETL 102 (125)
T ss_dssp ECSCC
T ss_pred ecCCC
Confidence 88754
No 103
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.63 E-value=5.9e-16 Score=120.12 Aligned_cols=73 Identities=30% Similarity=0.540 Sum_probs=69.9
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhh---hCCCCccceEeeccEEccCCCccccccccccccceEEEee
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~---~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~ 73 (457)
|+|+|++.+|++++++|++++||.++|++|+++ .|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++.+.
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence 799999999999999999999999999999998 8999999999999999999999999999999999998764
No 104
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=6.2e-16 Score=118.81 Aligned_cols=73 Identities=40% Similarity=0.690 Sum_probs=70.8
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEee
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~ 73 (457)
|+|+|++.+|++++++|.+++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|+++++
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999998765
No 105
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.63 E-value=5.5e-16 Score=122.86 Aligned_cols=73 Identities=23% Similarity=0.240 Sum_probs=68.7
Q ss_pred CeEEEEcCCC--cEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccc-cccccceEEEee
Q 012749 1 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g--~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I-~~~sti~l~~~~ 73 (457)
|+|||++..| .+++++|.|++||.+||++|++++|+|+++|+++|+|+.++|++||++|+| ++++++||++-.
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence 6899999875 799999999999999999999999999999999999999999999999999 699999998743
No 106
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.3e-16 Score=127.54 Aligned_cols=91 Identities=32% Similarity=0.533 Sum_probs=67.7
Q ss_pred cccccccccCceEEEEEEecCceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccc
Q 012749 359 TLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438 (457)
Q Consensus 359 ~L~~~~i~~~~~l~l~~~~~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~ 438 (457)
..++|.|+ +|.++.......|.|+|++ .|+++.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++
T Consensus 9 ~~~~~~~~--~t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ 85 (101)
T 3m63_B 9 PMSDYDIP--TTENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVES 85 (101)
T ss_dssp ----------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTT
T ss_pred CccccCCC--cceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHH
Confidence 45677775 5666665555567888887 88999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCEEEEEEe
Q 012749 439 YNIQKESTLHLVLR 452 (457)
Q Consensus 439 ~~i~~~~~i~l~~r 452 (457)
|||++|++|+|+.+
T Consensus 86 ~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 86 YHIQDGHSVHLVKS 99 (101)
T ss_dssp TTCCTTEEEEECCC
T ss_pred CCCCCCCEEEEEeC
Confidence 99999999999765
No 107
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.63 E-value=5.2e-16 Score=122.53 Aligned_cols=76 Identities=29% Similarity=0.482 Sum_probs=71.5
Q ss_pred CeEEEEcCCCc--EEEEEecCCCcHHHHHHHHhhhh--CCCCccceEeeccEEccCCCccccc--cccccccceEEEeec
Q 012749 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLRLR 74 (457)
Q Consensus 1 ~~i~~~~~~g~--~~~~~v~~~dtv~~ik~ki~~~~--gip~~~q~l~~~g~~L~~~~tl~~y--~I~~~sti~l~~~~~ 74 (457)
|+|+|++.+|+ ++++++++++||.++|++|++++ |+|+++|+|+|.|+.|+|+.+|++| +|.+++++||+++++
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~~~ 87 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNVK 87 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECCCC
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeCCC
Confidence 79999999998 77888889999999999999998 9999999999999999999999999 999999999998876
Q ss_pred Cc
Q 012749 75 GG 76 (457)
Q Consensus 75 ~~ 76 (457)
++
T Consensus 88 gg 89 (93)
T 1wgd_A 88 SG 89 (93)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 108
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.62 E-value=6.6e-16 Score=121.41 Aligned_cols=65 Identities=23% Similarity=0.359 Sum_probs=61.4
Q ss_pred CcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecC
Q 012749 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (457)
Q Consensus 10 g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~ 75 (457)
|++++++|++++||.++|++|++++|+|+++|+|+|+|++|+|++||++|+|.+++++ +++++++
T Consensus 29 ~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg 93 (100)
T 1wju_A 29 DRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQ 93 (100)
T ss_dssp SSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCC
T ss_pred CcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECC
Confidence 7899999999999999999999999999999999999999999999999999999999 6666554
No 109
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.62 E-value=1e-15 Score=126.15 Aligned_cols=78 Identities=23% Similarity=0.342 Sum_probs=72.6
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhh------hcCCC--CCCeEEEEcCeecCCCCcccccCCCCCC--EEE
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKES--TLH 448 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~------~~~ip--~~~q~l~~~g~~L~d~~tL~~~~i~~~~--~i~ 448 (457)
..|+|++++.+|++++++|++++||++||++|++ ++|+| +++|+|+|.|+.|+|+.||++|+|..++ +++
T Consensus 16 ~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlh 95 (125)
T 2gow_A 16 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMH 95 (125)
T ss_dssp TCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEE
T ss_pred CeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEE
Confidence 4589999999999999999999999999999999 78884 9999999999999999999999999776 789
Q ss_pred EEEecCCC
Q 012749 449 LVLRLRGG 456 (457)
Q Consensus 449 l~~rl~GG 456 (457)
|++|++||
T Consensus 96 lv~r~~~~ 103 (125)
T 2gow_A 96 LVARETLP 103 (125)
T ss_dssp EEECSCCS
T ss_pred EEecCCCC
Confidence 99999876
No 110
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.61 E-value=3.3e-16 Score=125.25 Aligned_cols=93 Identities=31% Similarity=0.518 Sum_probs=67.6
Q ss_pred CCcccccccccCCcceEEEEeecceeeeeeecCCceEEEeecCCchHHHHHHHHhhhhCCCCCceEEEECCeecccCccc
Q 012749 129 GRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208 (457)
Q Consensus 129 ~~tl~~y~i~~~s~i~l~~~~~~~~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL 208 (457)
..++++|.| +++.++..+....+.|+|+. +|+.+.++|++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|
T Consensus 7 ~~~~~~~~~--~~t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL 83 (101)
T 3m63_B 7 HHPMSDYDI--PTTENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTV 83 (101)
T ss_dssp ------------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBT
T ss_pred cCCccccCC--CcceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcH
Confidence 457889988 45666666655667888887 899999999999999999999999999999999999999999999999
Q ss_pred cccCcCcCcEEEEEEE
Q 012749 209 ADYNIQKESTLHLVLR 224 (457)
Q Consensus 209 ~~y~I~~~~~i~l~~~ 224 (457)
++|||++|++|+|+.+
T Consensus 84 ~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 84 ESYHIQDGHSVHLVKS 99 (101)
T ss_dssp TTTTCCTTEEEEECCC
T ss_pred HHCCCCCCCEEEEEeC
Confidence 9999999999999765
No 111
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.61 E-value=1.5e-15 Score=115.51 Aligned_cols=72 Identities=33% Similarity=0.559 Sum_probs=69.1
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEee
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~ 73 (457)
|+|+|++ +|+++++++++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++.+.
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 7899999 99999999999999999999999999999999999999999999999999999999999998653
No 112
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.60 E-value=1.1e-15 Score=123.63 Aligned_cols=74 Identities=28% Similarity=0.525 Sum_probs=71.3
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeec
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~ 74 (457)
|+|+|++++|++++++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++.+..
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~ 97 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQP 97 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCS
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999988643
No 113
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.60 E-value=8.9e-16 Score=121.66 Aligned_cols=70 Identities=24% Similarity=0.394 Sum_probs=65.3
Q ss_pred CeEEEEcCCCc--EEEEEecCCCcHHHHHHHHhhh-hCCC-CccceEeeccEEccCCCccccc--cccccccceEE
Q 012749 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK-EGIP-PDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLV 70 (457)
Q Consensus 1 ~~i~~~~~~g~--~~~~~v~~~dtv~~ik~ki~~~-~gip-~~~q~l~~~g~~L~~~~tl~~y--~I~~~sti~l~ 70 (457)
|+|+|++++|+ +++++|++++||.+||++|+++ +|+| +++|+|+|+|++|+|+.+|++| +|.+++++||+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 78999999998 7899999999999999999986 6766 4999999999999999999999 99999999985
No 114
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=1.9e-15 Score=120.56 Aligned_cols=74 Identities=35% Similarity=0.490 Sum_probs=70.7
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecC
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~ 75 (457)
|+|+|++.+|+ ++++|++++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.++++++++++.++
T Consensus 23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~ 96 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH 96 (100)
T ss_dssp EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCC
Confidence 78999999997 799999999999999999999999999999999999999999999999999999999987654
No 115
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.59 E-value=4.6e-15 Score=117.56 Aligned_cols=73 Identities=23% Similarity=0.245 Sum_probs=68.1
Q ss_pred ceeeEEEeCCC--CEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCC-CCCCEEEEEEe
Q 012749 380 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR 452 (457)
Q Consensus 380 ~~~i~v~~~~g--~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i-~~~~~i~l~~r 452 (457)
.|+|+|++..+ .+++++|.|++||++||++|++++|+||+.|||+|+|+.++|+.||++||| ++|++++|.+.
T Consensus 24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 47899998874 689999999999999999999999999999999999999999999999999 59999999874
No 116
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.58 E-value=3.7e-15 Score=121.47 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=72.9
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecCc
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~~ 76 (457)
|+|+|++++|++++++|.+++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus 36 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999987753
No 117
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.58 E-value=1.2e-16 Score=133.76 Aligned_cols=76 Identities=97% Similarity=1.333 Sum_probs=0.0
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecCc
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~~ 76 (457)
|+|+|++++|++++++|++++||.+||++|++..|+|++.|+|+|+|+.|+|+.||++|+|.+++++|+++++.++
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG 76 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (128)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999887765
No 118
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.58 E-value=2.5e-15 Score=122.60 Aligned_cols=79 Identities=33% Similarity=0.468 Sum_probs=75.1
Q ss_pred cCceEEEEEcc---CCcEEEEEEcC-CCCHHHHHHHHhhhhCCCCCCcEEEecCcccCCCCcccccccccCCcceEEEEe
Q 012749 74 RGGMQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (457)
Q Consensus 74 ~~~~~i~vk~~---~g~~~~l~v~~-~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~ 149 (457)
.+.|+|+|+++ +|+.+.++|++ ++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|.+++
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 46799999998 89999999998 999999999999999999999999999999999999999999999999999988
Q ss_pred ecc
Q 012749 150 RGG 152 (457)
Q Consensus 150 ~~~ 152 (457)
++|
T Consensus 105 ~GG 107 (111)
T 1we6_A 105 RSG 107 (111)
T ss_dssp CCS
T ss_pred CCC
Confidence 776
No 119
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.58 E-value=1.6e-15 Score=120.55 Aligned_cols=75 Identities=28% Similarity=0.373 Sum_probs=71.7
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecCc
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~~ 76 (457)
|+|+|++. |++++++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++..++
T Consensus 18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g 92 (96)
T 1wx8_A 18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSG 92 (96)
T ss_dssp EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCC
Confidence 78999999 9999999999999999999999999999999999999999999999999999999999999877653
No 120
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.58 E-value=1.5e-16 Score=136.09 Aligned_cols=76 Identities=97% Similarity=1.333 Sum_probs=0.0
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecCc
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~~ 76 (457)
|||||++++|++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|+++++.++
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GG 76 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987764
No 121
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.56 E-value=7.6e-15 Score=117.41 Aligned_cols=73 Identities=33% Similarity=0.450 Sum_probs=70.2
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeec
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~ 74 (457)
|+|+|++. |++++++|++++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.++++++++.+.+
T Consensus 26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~ 98 (101)
T 2klc_A 26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQ 98 (101)
T ss_dssp EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCS
T ss_pred EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence 78999999 99999999999999999999999999999999999999999999999999999999999988754
No 122
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.56 E-value=6.6e-15 Score=122.21 Aligned_cols=75 Identities=31% Similarity=0.401 Sum_probs=69.5
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecCc
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~~ 76 (457)
|+|+|++. |++++++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|.+|+|.+++++|++.+..++
T Consensus 33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg 107 (125)
T 1j8c_A 33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPN 107 (125)
T ss_dssp EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC----
T ss_pred EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCC
Confidence 78999999 9999999999999999999999999999999999999999999999999999999999999887654
No 123
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.56 E-value=2.9e-16 Score=137.74 Aligned_cols=72 Identities=29% Similarity=0.403 Sum_probs=0.4
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecCce
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 77 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~~~ 77 (457)
|||||++++|++++|+|+++|||.+||++|++++|||+++|+|+|+|++|+|++||+ ++|||||+++++++.
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~ 72 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGK 72 (189)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCc
Confidence 899999999999999999999999999999999999999999999999999999998 899999999987763
No 124
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.56 E-value=4.4e-15 Score=117.61 Aligned_cols=73 Identities=23% Similarity=0.348 Sum_probs=65.7
Q ss_pred cCceeeEEEeCCCC--EEEEEecCCchHHHHHHHHhhh-cCCCC-CCeEEEEcCeecCCCCccccc--CCCCCCEEEEE
Q 012749 378 RGGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK-EGIPP-DQQRLIFAGKQLEDGRTLADY--NIQKESTLHLV 450 (457)
Q Consensus 378 ~~~~~i~v~~~~g~--~~~l~v~~~~tV~~lK~~i~~~-~~ip~-~~q~l~~~g~~L~d~~tL~~~--~i~~~~~i~l~ 450 (457)
..+|+|+|++.+|+ .++++|++++||.+||++|+++ .|+|| ++|+|+|.|+.|+|+.+|++| +|+++++|+|+
T Consensus 21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 35799999999988 6799999999999999999996 56665 999999999999999999999 99999999984
No 125
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.56 E-value=3e-16 Score=137.64 Aligned_cols=72 Identities=29% Similarity=0.394 Sum_probs=0.4
Q ss_pred eeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012749 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 457 (457)
|+|||++++|++++++|++++||.+||.+|++.+|||+++|+|+|+|++|+|+.||+ ++|||+|++|++||.
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~ 72 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGK 72 (189)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCc
Confidence 789999999999999999999999999999999999999999999999999999999 899999999999994
No 126
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.55 E-value=5.7e-15 Score=118.47 Aligned_cols=76 Identities=20% Similarity=0.376 Sum_probs=70.3
Q ss_pred CeEEEEcCCC----cEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCC-CccccccccccccceEEEeecC
Q 012749 1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG 75 (457)
Q Consensus 1 ~~i~~~~~~g----~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~-~tl~~y~I~~~sti~l~~~~~~ 75 (457)
|+|+|++.+| ++++++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+ .+|++|+|.+++++|++.+.++
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~~g 87 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDNV 87 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCCC
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECCCC
Confidence 7999999755 7999999999999999999999999999999999999999887 6999999999999999887654
Q ss_pred c
Q 012749 76 G 76 (457)
Q Consensus 76 ~ 76 (457)
+
T Consensus 88 g 88 (102)
T 1v5o_A 88 G 88 (102)
T ss_dssp C
T ss_pred C
Confidence 3
No 127
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.54 E-value=1.8e-14 Score=113.09 Aligned_cols=80 Identities=16% Similarity=0.379 Sum_probs=76.7
Q ss_pred cCceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012749 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 457 (457)
+..|+|+|++.+|+.+.++|.+++++..||.+++++.|+|+++++|+|+|+.|+++.|+++|++++|++|++.++++||+
T Consensus 5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG~ 84 (94)
T 2io1_B 5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 84 (94)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEESC
T ss_pred CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999995
No 128
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.54 E-value=1e-14 Score=117.97 Aligned_cols=74 Identities=35% Similarity=0.490 Sum_probs=70.6
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecC
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~ 75 (457)
|+|+|++.+|+ +.++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++.+..+
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~ 91 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH 91 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCC
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 78999999997 799999999999999999999999999999999999999999999999999999999987654
No 129
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=6e-15 Score=116.68 Aligned_cols=72 Identities=19% Similarity=0.298 Sum_probs=68.0
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEee--ccEEccCCCccccccccccccceEEEee
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~--~g~~L~~~~tl~~y~I~~~sti~l~~~~ 73 (457)
|++|+.+.+|++++++|++++||.++|++|++++|||+++|+|++ .|+ |+|+.+|++|+|..++++|++++.
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSS
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecC
Confidence 789999999999999999999999999999999999999999986 666 999999999999999999998864
No 130
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.53 E-value=2.9e-14 Score=112.87 Aligned_cols=74 Identities=27% Similarity=0.410 Sum_probs=70.2
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCC-CcccccCCCCCCEEEEEEecCC
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG 455 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~-~tL~~~~i~~~~~i~l~~rl~G 455 (457)
..|+|+|++.+|+.+.++|++++||.+||.+|++.+ +++|+|+|+|+.|+|+ .+|++|||++|++|+|+.+..+
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~ 80 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG 80 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence 569999999999999999999999999999999998 8999999999999999 9999999999999999998655
No 131
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.53 E-value=2.5e-14 Score=110.61 Aligned_cols=69 Identities=29% Similarity=0.459 Sum_probs=64.9
Q ss_pred eEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012749 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 383 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
++++...|+.+.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|+|..
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~ 82 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMA 82 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEEC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEE
Confidence 455667899999999999999999999999999999999999999999999999999999999999875
No 132
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.52 E-value=2e-14 Score=112.43 Aligned_cols=73 Identities=22% Similarity=0.448 Sum_probs=68.7
Q ss_pred CceeeEEEeCCCCEEEE-EecCCchHHHHHHHHhhhcCCCCCCeEEE---EcCeecCCCCcccccCCCCCCEEEEEEe
Q 012749 379 GGMQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l-~v~~~~tV~~lK~~i~~~~~ip~~~q~l~---~~g~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
..|+|+|+. .|+++.+ +|++++||.+||++|++++|+|+++|+|+ |+|+.|+|+.+|++|||++|++|+|...
T Consensus 6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence 468999996 7899999 99999999999999999999999999999 9999999999999999999999998753
No 133
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=9e-15 Score=113.54 Aligned_cols=69 Identities=23% Similarity=0.305 Sum_probs=64.4
Q ss_pred CeEEEEcCCCcEE--EE-EecCCCcHHHHHHHHhh-hhCCCCccceEeec--cEEccCCCccccccccccccceE
Q 012749 1 MQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQD-KEGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL 69 (457)
Q Consensus 1 ~~i~~~~~~g~~~--~~-~v~~~dtv~~ik~ki~~-~~gip~~~q~l~~~--g~~L~~~~tl~~y~I~~~sti~l 69 (457)
|+|+|++..|+.+ ++ +|+|++||.+||++|++ +.|+|+++|+|+|. |+.|+|+.||++|+|.+++++|+
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 8999999998775 58 99999999999999999 58999999999987 99999999999999999999876
No 134
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=4.5e-14 Score=112.73 Aligned_cols=74 Identities=16% Similarity=0.292 Sum_probs=68.6
Q ss_pred CceeeEEE-eCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 012749 379 GGMQIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 379 ~~~~i~v~-~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
..+.|.|+ ...|+.+++.++++.||.+||+.++...++|++.|+|+|+|+.|.|+.||++|||++|+||||+.+
T Consensus 14 ~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~ 88 (118)
T 2daf_A 14 SLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIF 88 (118)
T ss_dssp SCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEE
T ss_pred ccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEe
Confidence 34667776 566889999999999999999999999999999999999999999999999999999999999987
No 135
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.50 E-value=2.7e-14 Score=117.18 Aligned_cols=76 Identities=29% Similarity=0.577 Sum_probs=70.4
Q ss_pred CeEEEEcC----------CCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEE
Q 012749 1 MQIFVKTL----------TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (457)
Q Consensus 1 ~~i~~~~~----------~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~ 70 (457)
++|.|+.+ +|++++++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++
T Consensus 26 i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv 105 (115)
T 1we7_A 26 VSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLA 105 (115)
T ss_dssp EEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEE
T ss_pred EEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEE
Confidence 35677765 48999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCc
Q 012749 71 LRLRGG 76 (457)
Q Consensus 71 ~~~~~~ 76 (457)
++++++
T Consensus 106 ~rl~GG 111 (115)
T 1we7_A 106 LKERSG 111 (115)
T ss_dssp ECCCSC
T ss_pred EEcCCC
Confidence 988765
No 136
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=2.1e-14 Score=113.51 Aligned_cols=73 Identities=19% Similarity=0.289 Sum_probs=68.0
Q ss_pred ceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEE--cCeecCCCCcccccCCCCCCEEEEEEec
Q 012749 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLRL 453 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~--~g~~L~d~~tL~~~~i~~~~~i~l~~rl 453 (457)
.|.+++....|++++++|++++||++||++|++++||||++|+|+| .|+ |+|+.+|++|+|++|++|+|+++-
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSS
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecC
Confidence 5888888899999999999999999999999999999999999997 566 999999999999999999998874
No 137
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.50 E-value=4.9e-14 Score=113.98 Aligned_cols=76 Identities=28% Similarity=0.393 Sum_probs=70.1
Q ss_pred CceeeEEEeCCC---CEEEEEecC---------CchHHHHHHHHhhhc--CCCCCC-eEEEEcCeecCCCCcccccCCCC
Q 012749 379 GGMQIFVKTLTG---KTITLEVES---------SDTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQK 443 (457)
Q Consensus 379 ~~~~i~v~~~~g---~~~~l~v~~---------~~tV~~lK~~i~~~~--~ip~~~-q~l~~~g~~L~d~~tL~~~~i~~ 443 (457)
..|+|+|+...+ +.+.+++++ ++||.+||++|++.+ |+|+++ |+|+|+|+.|+|+.+|++|||++
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~ 90 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQP 90 (107)
T ss_dssp CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCT
T ss_pred CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCC
Confidence 458999999988 789999554 499999999999999 999999 99999999999999999999999
Q ss_pred CCEEEEEEecC
Q 012749 444 ESTLHLVLRLR 454 (457)
Q Consensus 444 ~~~i~l~~rl~ 454 (457)
|++|+|+.+..
T Consensus 91 g~~i~lv~~~~ 101 (107)
T 1x1m_A 91 GSTVHVLRKSW 101 (107)
T ss_dssp TCEEEEEESSC
T ss_pred CCEEEEEeCCC
Confidence 99999998754
No 138
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.49 E-value=3.1e-14 Score=111.39 Aligned_cols=72 Identities=21% Similarity=0.412 Sum_probs=68.4
Q ss_pred CeEEEEcCCCcEEEE-EecCCCcHHHHHHHHhhhhCCCCccceEe---eccEEccCCCccccccccccccceEEEee
Q 012749 1 MQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~-~v~~~dtv~~ik~ki~~~~gip~~~q~l~---~~g~~L~~~~tl~~y~I~~~sti~l~~~~ 73 (457)
|+|+|+. +|+++++ +|++++||.+||++|+++.|+|+++|+|+ |.|+.|+|+.+|++|+|.++++++|+...
T Consensus 8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 7899996 8999999 99999999999999999999999999999 99999999999999999999999997643
No 139
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.49 E-value=3.8e-14 Score=112.11 Aligned_cols=72 Identities=18% Similarity=0.326 Sum_probs=66.8
Q ss_pred CceeeEEEeCCCCEE-EEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 012749 379 GGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~-~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
..|+|+|+. .|+++ .++|++++||.+||++|++.+|+|+++|+|+|.|+.|+|+ +|++|||++|++|+|...
T Consensus 6 ~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~ 78 (96)
T 1wgg_A 6 SGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGS 78 (96)
T ss_dssp CEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCC
T ss_pred cEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEec
Confidence 458899995 68899 6999999999999999999999999999999999999999 999999999999998653
No 140
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.49 E-value=1.3e-13 Score=107.23 Aligned_cols=80 Identities=16% Similarity=0.379 Sum_probs=76.7
Q ss_pred cCceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012749 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 457 (457)
+..|+|.|++.+|+...++|.+++++..|+.+++++.|+|+++++|+|+|+.|.++.|+++|++++|++|++..+++||+
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg~ 82 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 82 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCCC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999995
No 141
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.49 E-value=3.9e-14 Score=112.17 Aligned_cols=71 Identities=25% Similarity=0.364 Sum_probs=67.5
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCC-CccccccccccccceEEEeec
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLR 74 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~-~tl~~y~I~~~sti~l~~~~~ 74 (457)
|+|+|++.+|++++++|.+++||.+||++|+++. +++|+|+|+|+.|+|+ .+|++|+|.+++++|++++..
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~ 79 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPP 79 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCC
Confidence 7999999999999999999999999999999998 8899999999999999 999999999999999988654
No 142
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.48 E-value=5.7e-14 Score=108.59 Aligned_cols=70 Identities=29% Similarity=0.452 Sum_probs=66.6
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEe
Q 012749 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (457)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~ 72 (457)
+++++.+|++++++|++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.++++++++..
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 5788899999999999999999999999999999999999999999999999999999999999998754
No 143
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.48 E-value=1.2e-13 Score=108.49 Aligned_cols=72 Identities=14% Similarity=0.182 Sum_probs=63.7
Q ss_pred CceeeEEEeCCC--CEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEc--Ce---ec-CCCCcccccCCCCCCEEEEE
Q 012749 379 GGMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GK---QL-EDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 379 ~~~~i~v~~~~g--~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~--g~---~L-~d~~tL~~~~i~~~~~i~l~ 450 (457)
..+.|+|+...+ +.+++++++++||++||++|+.++||||++|+|+|. |+ .| +|+.+|++|||++|++|+|+
T Consensus 14 ~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 14 DFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp CEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred CeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence 456788887655 489999999999999999999999999999999997 45 55 89999999999999999986
No 144
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.48 E-value=5.2e-14 Score=111.29 Aligned_cols=71 Identities=17% Similarity=0.292 Sum_probs=66.8
Q ss_pred CeEEEEcCCCcEE-EEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEee
Q 012749 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g~~~-~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~ 73 (457)
|+|+|+. +|+++ .++|.+++||.+||++|+++.|+|+++|+|+|.|+.|+|+ +|++|+|.++++++|+...
T Consensus 8 m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~ 79 (96)
T 1wgg_A 8 YSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSA 79 (96)
T ss_dssp EEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCC
T ss_pred EEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecc
Confidence 7899995 79999 5999999999999999999999999999999999999999 9999999999999997654
No 145
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.47 E-value=1.1e-13 Score=108.94 Aligned_cols=74 Identities=24% Similarity=0.453 Sum_probs=68.0
Q ss_pred CceeeEEEeCCCCEEEEEecCC-----chHHHHHHHHhhhcCCCCCCeEEEEcCeecCC-CCcccccCCCCCCEEEEEEe
Q 012749 379 GGMQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~-----~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d-~~tL~~~~i~~~~~i~l~~r 452 (457)
..|+|+|+. .|+.+.++|+++ +||.+||.+|++.+|+|+++|+|+|+|+.|+| +.+|++|||++|++|+|+.+
T Consensus 6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~ 84 (92)
T 1wxv_A 6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK 84 (92)
T ss_dssp SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence 468999998 588999999995 99999999999999999999999999999998 56899999999999999875
Q ss_pred c
Q 012749 453 L 453 (457)
Q Consensus 453 l 453 (457)
.
T Consensus 85 ~ 85 (92)
T 1wxv_A 85 K 85 (92)
T ss_dssp C
T ss_pred C
Confidence 3
No 146
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.47 E-value=9.6e-14 Score=131.57 Aligned_cols=77 Identities=94% Similarity=1.277 Sum_probs=72.4
Q ss_pred cCceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecC
Q 012749 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 454 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~ 454 (457)
...|+|+|+..+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|++|+|
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999986
No 147
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.47 E-value=8.7e-14 Score=109.37 Aligned_cols=69 Identities=14% Similarity=0.203 Sum_probs=62.6
Q ss_pred eEEEEcCCC--cEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeec--cE---Ec-cCCCccccccccccccceEE
Q 012749 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GK---QL-EDGRTLADYNIQKESTLHLV 70 (457)
Q Consensus 2 ~i~~~~~~g--~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~--g~---~L-~~~~tl~~y~I~~~sti~l~ 70 (457)
.|+|+..++ +++++++++++||.+||+||++++|+|+++|+|+|. |+ +| +|+++|++|+|.+++++|++
T Consensus 17 ~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 17 KVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp EEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred EEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence 578887766 489999999999999999999999999999999998 45 45 89999999999999999986
No 148
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=5.2e-14 Score=109.22 Aligned_cols=70 Identities=23% Similarity=0.294 Sum_probs=64.6
Q ss_pred ceeeEEEeCCCCEE--EE-EecCCchHHHHHHHHhh-hcCCCCCCeEEEEc--CeecCCCCcccccCCCCCCEEEE
Q 012749 380 GMQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQD-KEGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL 449 (457)
Q Consensus 380 ~~~i~v~~~~g~~~--~l-~v~~~~tV~~lK~~i~~-~~~ip~~~q~l~~~--g~~L~d~~tL~~~~i~~~~~i~l 449 (457)
.|+|+|++..|+.+ .+ +|+|++||++||++|++ +.|+||++|+|+|. |+.|+|+.||++|||++|++|++
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 58999999988765 58 99999999999999999 58999999999987 99999999999999999999876
No 149
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.2e-13 Score=110.18 Aligned_cols=76 Identities=16% Similarity=0.287 Sum_probs=69.7
Q ss_pred eeeeee-ecCCceEEEeecCCchHHHHHHHHhhhhCCCCCceEEEECCeecccCccccccCcCcCcEEEEEEEecCC
Q 012749 153 MQIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (457)
Q Consensus 153 ~~i~V~-~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~I~~~~~i~l~~~~~~~ 228 (457)
+.|.|+ .++++.++++++++.||.+||+.++...++|+++|+|+|+||.|.|+.||.+|||++|.+|||+.+...+
T Consensus 16 itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~p 92 (118)
T 2daf_A 16 ATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTNP 92 (118)
T ss_dssp EEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESCT
T ss_pred EEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCCC
Confidence 556666 5578899999999999999999999999999999999999999999999999999999999999987544
No 150
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.46 E-value=6.8e-14 Score=113.13 Aligned_cols=73 Identities=29% Similarity=0.403 Sum_probs=68.3
Q ss_pred CeEEEEcCCC---cEEEEEec--------C-CCcHHHHHHHHhhhh--CCCCcc-ceEeeccEEccCCCccccccccccc
Q 012749 1 MQIFVKTLTG---KTITLEVE--------S-SDTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQKES 65 (457)
Q Consensus 1 ~~i~~~~~~g---~~~~~~v~--------~-~dtv~~ik~ki~~~~--gip~~~-q~l~~~g~~L~~~~tl~~y~I~~~s 65 (457)
|+|+|++.+| +++++++. + ++||.+||++|+++. |+|++. |+|+|.|+.|+|+++|++|+|.+++
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~ 92 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGS 92 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCCC
Confidence 7899999999 89999954 4 499999999999999 999999 9999999999999999999999999
Q ss_pred cceEEEee
Q 012749 66 TLHLVLRL 73 (457)
Q Consensus 66 ti~l~~~~ 73 (457)
++|++.+.
T Consensus 93 ~i~lv~~~ 100 (107)
T 1x1m_A 93 TVHVLRKS 100 (107)
T ss_dssp EEEEEESS
T ss_pred EEEEEeCC
Confidence 99998864
No 151
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.46 E-value=1.3e-13 Score=106.41 Aligned_cols=71 Identities=17% Similarity=0.278 Sum_probs=61.9
Q ss_pred eeEEEe--CCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEE-------cCeecCCCCcccccCCCCCCEEEEEEe
Q 012749 382 QIFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 382 ~i~v~~--~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~-------~g~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
.|.|.. ...+.+...+++++||++||++|+.++|+||++|+|+| .|+.|+|+++|++|||++|++|||+-+
T Consensus 4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL 83 (86)
T ss_dssp EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence 344442 34567889999999999999999999999999999996 488999999999999999999999753
No 152
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.43 E-value=8.2e-14 Score=110.03 Aligned_cols=72 Identities=19% Similarity=0.323 Sum_probs=65.6
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
..|+|+|+ ..|+++.++|++++||.+||++|++.+|+|+++|+|+|.|+.|+ +.+|++|||++|++|+|+..
T Consensus 16 ~~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ld-d~tL~~~~i~~g~~i~lv~~ 87 (95)
T 1v86_A 16 ELVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPE-DKTLREIKVTSGAKIMVVGS 87 (95)
T ss_dssp CCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCS-SSBHHHHCCCTTEEEEECCS
T ss_pred ceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCC-cCcHHHCCCCCCCEEEEEec
Confidence 45888998 46889999999999999999999999999999999999999994 45999999999999998754
No 153
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.43 E-value=4.5e-13 Score=104.96 Aligned_cols=79 Identities=16% Similarity=0.384 Sum_probs=73.4
Q ss_pred cCceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
...|+|.|++.+|+.+.++|.+++++..|+..++++.|+|++.++|+|+|+.|.++.|+++|++++|++|++.++++||
T Consensus 15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 93 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93 (93)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence 3568899999999999999999999999999999999999999999999999999999999999999999999999998
No 154
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.42 E-value=4e-13 Score=105.82 Aligned_cols=72 Identities=15% Similarity=0.205 Sum_probs=62.3
Q ss_pred ceeeEEEeCCC--CEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcC---ee----cCCCCcccccCCCCCCEEEEE
Q 012749 380 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 380 ~~~i~v~~~~g--~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g---~~----L~d~~tL~~~~i~~~~~i~l~ 450 (457)
.+.++|..... +.+++++++++||++||++|+.++||||++|+|+|.| +. ++|+.+|++|||++|++|+|+
T Consensus 14 ~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlv 93 (97)
T 2kj6_A 14 SVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHII 93 (97)
T ss_dssp CEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEE
T ss_pred eEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEE
Confidence 45677765433 4789999999999999999999999999999999988 33 489999999999999999986
Q ss_pred E
Q 012749 451 L 451 (457)
Q Consensus 451 ~ 451 (457)
-
T Consensus 94 d 94 (97)
T 2kj6_A 94 D 94 (97)
T ss_dssp E
T ss_pred e
Confidence 3
No 155
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.42 E-value=2.9e-13 Score=104.34 Aligned_cols=67 Identities=18% Similarity=0.265 Sum_probs=60.8
Q ss_pred cCCceEEEeecCCchHHHHHHHHhhhhCCCCCceEEEE-------CCeecccCccccccCcCcCcEEEEEEEec
Q 012749 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (457)
Q Consensus 160 ~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~-------~g~~L~d~~tL~~y~I~~~~~i~l~~~~~ 226 (457)
.+.+.+...+++++||++||++|+.++|+|+++|||+| .|+.|+|+++|++|+|++|++|||+.+.|
T Consensus 12 ~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~~P 85 (86)
T 4b6w_A 12 SRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDLQP 85 (86)
T ss_dssp CSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred CCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeCCC
Confidence 45566789999999999999999999999999999996 58899999999999999999999987543
No 156
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.42 E-value=2.5e-13 Score=128.77 Aligned_cols=74 Identities=96% Similarity=1.299 Sum_probs=69.8
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeec
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~ 74 (457)
|+|+|++++|++++++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++++++
T Consensus 234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999998753
No 157
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.40 E-value=3e-13 Score=132.00 Aligned_cols=78 Identities=31% Similarity=0.572 Sum_probs=74.4
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhh---hcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEE-EEEEecC
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRLR 454 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~---~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i-~l~~rl~ 454 (457)
..|+|+|++.+|+++.++|++++||.+||.+|++ ++|+|+++|+|+|.|+.|+|+++|++|||++|++| +++.|.+
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~ 85 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK 85 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCC
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCC
Confidence 5799999999999999999999999999999999 67899999999999999999999999999999999 8999998
Q ss_pred CC
Q 012749 455 GG 456 (457)
Q Consensus 455 GG 456 (457)
||
T Consensus 86 ~~ 87 (368)
T 1oqy_A 86 AG 87 (368)
T ss_dssp SS
T ss_pred CC
Confidence 86
No 158
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.40 E-value=4.1e-13 Score=105.56 Aligned_cols=72 Identities=24% Similarity=0.433 Sum_probs=66.8
Q ss_pred CeEEEEcCCCcEEEEEecCC-----CcHHHHHHHHhhhhCCCCccceEeeccEEccC-CCccccccccccccceEEEee
Q 012749 1 MQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~-----dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~-~~tl~~y~I~~~sti~l~~~~ 73 (457)
|+|+|++ .|+++++++.++ +||.+||++|+++.|+|+++|+|+|.|+.|+| +.+|++|+|.+++++|++.+.
T Consensus 8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~~ 85 (92)
T 1wxv_A 8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKK 85 (92)
T ss_dssp EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCC
T ss_pred EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEecC
Confidence 6899999 589999999995 99999999999999999999999999999988 568999999999999997654
No 159
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.40 E-value=1.8e-13 Score=108.03 Aligned_cols=70 Identities=21% Similarity=0.378 Sum_probs=64.7
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEe
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~ 72 (457)
|+|+|+ .+|++++++|++++||.+||++|+++.|+|+++|+|+|.|+.|+| .+|++|+|.+++++|++..
T Consensus 18 ~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd-~tL~~~~i~~g~~i~lv~~ 87 (95)
T 1v86_A 18 VDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPED-KTLREIKVTSGAKIMVVGS 87 (95)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSS-SBHHHHCCCTTEEEEECCS
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCCc-CcHHHCCCCCCCEEEEEec
Confidence 678898 579999999999999999999999999999999999999999954 5999999999999999754
No 160
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.40 E-value=6.4e-13 Score=105.91 Aligned_cols=80 Identities=15% Similarity=0.337 Sum_probs=76.8
Q ss_pred cCceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012749 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 457 (457)
...|+|.|++.+|+.+.++|.+++++..|+..++++.|+|++.++|+|+|+.|.++.|+++|++++|++|++.++++||.
T Consensus 22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG~ 101 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSGP 101 (104)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCCS
T ss_pred CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999995
No 161
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.38 E-value=4.5e-13 Score=105.54 Aligned_cols=70 Identities=16% Similarity=0.203 Sum_probs=62.0
Q ss_pred eEEEEcCCC--cEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccE---E----ccCCCccccccccccccceEEE
Q 012749 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK---Q----LEDGRTLADYNIQKESTLHLVL 71 (457)
Q Consensus 2 ~i~~~~~~g--~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~---~----L~~~~tl~~y~I~~~sti~l~~ 71 (457)
.++|...+. ++++++|++++||.+||+||++++|||+++|+|+|+|+ . ++|+++|.+|+|.+++++|++-
T Consensus 16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd 94 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIID 94 (97)
T ss_dssp EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEE
T ss_pred EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEe
Confidence 467776544 58999999999999999999999999999999999983 3 4899999999999999999975
No 162
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.38 E-value=1.4e-12 Score=103.99 Aligned_cols=77 Identities=13% Similarity=0.320 Sum_probs=72.0
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
..|+|.|++ +|+...++|.+++++..|+.+++++.|++++.++|+|+|+.|.++.|.++|++++|++|++.++++||
T Consensus 30 ~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG 106 (106)
T 2eke_C 30 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 106 (106)
T ss_dssp SEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence 458999999 99999999999999999999999999999999999999999999999999999999999999999998
No 163
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.37 E-value=9e-13 Score=103.33 Aligned_cols=76 Identities=17% Similarity=0.403 Sum_probs=73.2
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecCc
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~~ 76 (457)
|+|+|++.+|+.+.+.|++++++..|+++++++.|+|+++|+|+|+|++|.++.|+++|+++++++||++++..++
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999987665
No 164
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.36 E-value=6.6e-13 Score=129.57 Aligned_cols=75 Identities=31% Similarity=0.561 Sum_probs=70.5
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhh---hhCCCCccceEeeccEEccCCCccccccccccccc-eEEEeecC
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRLRG 75 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~---~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti-~l~~~~~~ 75 (457)
|+|+|++++|++++++|.+++||.+||++|++ +.|+|+++|+|+|.|+.|+|+++|.+|+|.+++++ |++.+.++
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~~ 86 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKA 86 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCCS
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCCC
Confidence 89999999999999999999999999999999 67899999999999999999999999999999998 77766654
No 165
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.35 E-value=1.6e-12 Score=102.59 Aligned_cols=71 Identities=20% Similarity=0.279 Sum_probs=62.0
Q ss_pred eeeEEEeCCCC-EEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcC---ee----cCCCCcccccCCCCCCEEEEEE
Q 012749 381 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 381 ~~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g---~~----L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
+.|+|+..... .+++++++++||++||.+|+.++|+|+++|+|+|.| +. ++|+.+|++|||++|++|+|.-
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 56777765442 689999999999999999999999999999999986 43 5899999999999999999863
No 166
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.35 E-value=7.2e-13 Score=106.98 Aligned_cols=72 Identities=22% Similarity=0.303 Sum_probs=65.9
Q ss_pred ceeeEEEeCCCCEEEEEec-CCchHHHHHHHHhhhcCCCCCCeEEEEcCe-----------e----cCCCCcccccCCCC
Q 012749 380 GMQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQK 443 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~-~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~-----------~----L~d~~tL~~~~i~~ 443 (457)
.|.|+|++.+|+. .++|+ +++||.+||++|++++|+|+++|+|+|.|+ . ++|+.+|++|||++
T Consensus 7 ~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~ 85 (107)
T 1wf9_A 7 GTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAH 85 (107)
T ss_dssp CEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCT
T ss_pred eEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCC
Confidence 4899999999965 79999 999999999999999999999999999888 4 57889999999999
Q ss_pred CCEEEEEEe
Q 012749 444 ESTLHLVLR 452 (457)
Q Consensus 444 ~~~i~l~~r 452 (457)
|++|||...
T Consensus 86 G~~L~l~~~ 94 (107)
T 1wf9_A 86 GSMVYLAYE 94 (107)
T ss_dssp TCEEECCCS
T ss_pred CCEEEEEeC
Confidence 999998754
No 167
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.34 E-value=1.4e-12 Score=104.80 Aligned_cols=80 Identities=15% Similarity=0.391 Sum_probs=76.5
Q ss_pred cCceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012749 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 457 (457)
+..|+|+|++.+|+.+.++|.+++++..|+.+++++.|+|+++++|+|+|+.|.++.|+++|++++|++|++.+.++||.
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~ 103 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGL 103 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC-
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCcc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999994
No 168
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.34 E-value=8.8e-13 Score=106.47 Aligned_cols=71 Identities=21% Similarity=0.276 Sum_probs=65.9
Q ss_pred CeEEEEcCCCcEEEEEec-CCCcHHHHHHHHhhhhCCCCccceEeeccE-----------E----ccCCCcccccccccc
Q 012749 1 MQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQKE 64 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~-~~dtv~~ik~ki~~~~gip~~~q~l~~~g~-----------~----L~~~~tl~~y~I~~~ 64 (457)
|+|+|++.+|+. .++|+ +++||.+||++|+++.|+|+++|+|+|+|+ . ++|+.+|++|+|.++
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G 86 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG 86 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence 789999999976 79999 999999999999999999999999999988 4 588999999999999
Q ss_pred ccceEEEe
Q 012749 65 STLHLVLR 72 (457)
Q Consensus 65 sti~l~~~ 72 (457)
+++|++..
T Consensus 87 ~~L~l~~~ 94 (107)
T 1wf9_A 87 SMVYLAYE 94 (107)
T ss_dssp CEEECCCS
T ss_pred CEEEEEeC
Confidence 99999764
No 169
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.29 E-value=1.2e-11 Score=92.05 Aligned_cols=70 Identities=16% Similarity=0.384 Sum_probs=68.0
Q ss_pred eeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 012749 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~ 450 (457)
|+|.|++.+|+...++|.+++++..|+.+++++.|+|+++++++|+|+.|.++.|+++|++++|++|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999999985
No 170
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.28 E-value=4.9e-12 Score=99.86 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=61.4
Q ss_pred eEEEEcCCCc-EEEEEecCCCcHHHHHHHHhhhhCCCCccceEeecc---EE----ccCCCccccccccccccceEEE
Q 012749 2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL 71 (457)
Q Consensus 2 ~i~~~~~~g~-~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g---~~----L~~~~tl~~y~I~~~sti~l~~ 71 (457)
.|+|+..+.. .+++++.+++||.+||++|++++|+|+++|+|+|.| +. ++|+++|.+|+|.+++++|++-
T Consensus 9 ~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 9 MVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp EEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 4567765443 799999999999999999999999999999999987 43 5899999999999999999864
No 171
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.27 E-value=1.2e-11 Score=102.14 Aligned_cols=72 Identities=15% Similarity=0.266 Sum_probs=62.9
Q ss_pred ceeeEEEeCCCC-EEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcC---e---ec-CCCCcccccCCCCCCEEEEEE
Q 012749 380 GMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---K---QL-EDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 380 ~~~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g---~---~L-~d~~tL~~~~i~~~~~i~l~~ 451 (457)
.+.|+|+...+. .+++++++++||++||.+|+..+||||++|+|+|.| + .| +|+.+|++|||++|++|||+.
T Consensus 6 ~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd 85 (122)
T 1t0y_A 6 VYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVD 85 (122)
T ss_dssp EEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEE
T ss_pred EEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEe
Confidence 467778765442 689999999999999999999999999999999977 4 34 789999999999999999875
No 172
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.26 E-value=1.4e-11 Score=95.80 Aligned_cols=76 Identities=17% Similarity=0.403 Sum_probs=72.7
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecCc
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~~ 76 (457)
|+|.|++.+|+.+.+.|++++++..|+++.+++.|+|++.++|+|+|++|.++.|+++|+++++++|+++++..++
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg 81 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 81 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999887654
No 173
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.25 E-value=6.5e-12 Score=97.22 Aligned_cols=71 Identities=24% Similarity=0.343 Sum_probs=63.3
Q ss_pred eeeEEEeCCCCEEEEE-ecCCchHHHHHHHHhhhcCCCCCCeEEEEc--CeecC---CCCcccccCCCCCCEEEEEEe
Q 012749 381 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~-v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~--g~~L~---d~~tL~~~~i~~~~~i~l~~r 452 (457)
|+|+|+..+|+ +.++ +++++||++||.+|++++|+|++.|+|+|+ +++|+ |+.+|++|||.+|++|++.-.
T Consensus 1 m~i~vr~~~G~-~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGT-HLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEE-EEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCC-EEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 78999999996 4577 999999999999999999999999999997 47874 678999999999999998643
No 174
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.23 E-value=4.3e-11 Score=90.75 Aligned_cols=73 Identities=10% Similarity=0.254 Sum_probs=69.5
Q ss_pred cCceeeEEEeCCCC-EEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 012749 378 RGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 378 ~~~~~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~ 450 (457)
+..|+|.|++.+|+ .+.++|.+++++..|+..++++.|+++++++|+|+|+.|.++.|+++|++++|++|++.
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 45689999999996 89999999999999999999999999999999999999999999999999999999985
No 175
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.22 E-value=1.8e-11 Score=101.07 Aligned_cols=71 Identities=14% Similarity=0.252 Sum_probs=62.8
Q ss_pred eEEEEcCCCc-EEEEEecCCCcHHHHHHHHhhhhCCCCccceEeecc---E---E-ccCCCccccccccccccceEEEe
Q 012749 2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---K---Q-LEDGRTLADYNIQKESTLHLVLR 72 (457)
Q Consensus 2 ~i~~~~~~g~-~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g---~---~-L~~~~tl~~y~I~~~sti~l~~~ 72 (457)
.|+|+..++. .+++++.+++||.+||.+|+++.|+|+++|+|+|.| + + ++|+++|.+|+|.+++++|++..
T Consensus 8 ~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~ 86 (122)
T 1t0y_A 8 DLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV 86 (122)
T ss_dssp EEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred EEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeC
Confidence 5677776553 789999999999999999999999999999999987 3 3 48899999999999999999873
No 176
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.21 E-value=2.8e-11 Score=90.16 Aligned_cols=70 Identities=16% Similarity=0.384 Sum_probs=67.9
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEE
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~ 70 (457)
|+|.|++.+|+.+.+.|.+++++..|+++.+++.|+|++.++|+|+|++|.++.|.++|++.++++|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999999975
No 177
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.19 E-value=4.5e-11 Score=93.55 Aligned_cols=75 Identities=16% Similarity=0.379 Sum_probs=70.7
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecC
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~ 75 (457)
|+|.|++.+|+.+.+.|.+++++..|+++++++.|+|++.++|+|+|+.|.++.|+++|++.++++|+++++..+
T Consensus 18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~G 92 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 92 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC--
T ss_pred EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999987665
No 178
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.16 E-value=2.6e-11 Score=93.83 Aligned_cols=70 Identities=24% Similarity=0.377 Sum_probs=63.4
Q ss_pred CeEEEEcCCCcEEEEE-ecCCCcHHHHHHHHhhhhCCCCccceEeec--cEEcc---CCCccccccccccccceEEE
Q 012749 1 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVL 71 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~-v~~~dtv~~ik~ki~~~~gip~~~q~l~~~--g~~L~---~~~tl~~y~I~~~sti~l~~ 71 (457)
|+|+|++.+|+.. ++ +++++||.+||++|+++.|+|+++|+|.|+ ++.|+ ++.+|++|+|.+++++|+.-
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence 8999999999754 77 999999999999999999999999999997 47774 68899999999999998864
No 179
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.14 E-value=5.8e-11 Score=94.52 Aligned_cols=76 Identities=16% Similarity=0.376 Sum_probs=72.3
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecCc
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~~ 76 (457)
|+|.|++.+|+.+.+.|.+++++..|+.+++++.|+|++.++|+|+|+.|.++.|+++|++.++++|+++++..++
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 100 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSG 100 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCC
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999998876653
No 180
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.12 E-value=1.5e-10 Score=87.76 Aligned_cols=70 Identities=10% Similarity=0.274 Sum_probs=67.2
Q ss_pred CeEEEEcCCCc-EEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEE
Q 012749 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (457)
Q Consensus 1 ~~i~~~~~~g~-~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~ 70 (457)
|+|.|++.+|+ .+.+.|.+++++..|+++.+++.|+|+++++|+|+|++|.++.|.++|++.++++|++.
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 68999999996 99999999999999999999999999999999999999999999999999999999874
No 181
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.12 E-value=5.4e-11 Score=95.49 Aligned_cols=77 Identities=16% Similarity=0.428 Sum_probs=73.3
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecCce
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 77 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~~~ 77 (457)
|+|.|++.+|+.+.+.|.+++++..|+++.+++.|+|+++++|+|+|++|.++.|+++|++.++++|++++...+++
T Consensus 27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~ 103 (110)
T 2k8h_A 27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGL 103 (110)
T ss_dssp EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC-
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCcc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999887764
No 182
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.11 E-value=1.3e-10 Score=92.61 Aligned_cols=74 Identities=12% Similarity=0.314 Sum_probs=69.8
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEEEeecC
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~~~~~~ 75 (457)
|+|.|++ +|+.+.+.|.+++++..|+++.+++.|+|++.++|+|+|++|.++.|.++|++.++++|+++++..+
T Consensus 32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~G 105 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 105 (106)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC--
T ss_pred EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeeccc
Confidence 6899999 9999999999999999999999999999999999999999999999999999999999999987654
No 183
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.09 E-value=1.1e-10 Score=112.37 Aligned_cols=72 Identities=22% Similarity=0.443 Sum_probs=65.3
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEE---EcCeecCCCCcccccCCCCCCEEEEEE
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~---~~g~~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
..|.|.|+. .|+++.++|++++||++||++|++.+||||++|+|+ |.|+.|+|+.+|++|||++|++|+|..
T Consensus 4 ~~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~g 78 (320)
T 3shq_A 4 KEVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVG 78 (320)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEEC
T ss_pred ceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEc
Confidence 357888885 799999999999999999999999999999999999 899999999999999999999999874
No 184
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.08 E-value=9.3e-11 Score=112.82 Aligned_cols=77 Identities=21% Similarity=0.424 Sum_probs=68.0
Q ss_pred CceEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCcEEE---ecCcccCCCCcccccccccCCcceEEEEeec
Q 012749 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (457)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~---~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~~ 151 (457)
..|.|+|+ .+|+.+.++|++++||++||++|++++|+||++|+|+ |+|+.|+|+.+|++|+|++|++|+|+..+..
T Consensus 4 ~~i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~~ 82 (320)
T 3shq_A 4 KEVVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTEA 82 (320)
T ss_dssp CEEEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC-
T ss_pred ceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccchh
Confidence 35788898 5899999999999999999999999999999999999 8999999999999999999999999876544
Q ss_pred c
Q 012749 152 G 152 (457)
Q Consensus 152 ~ 152 (457)
.
T Consensus 83 ~ 83 (320)
T 3shq_A 83 D 83 (320)
T ss_dssp -
T ss_pred h
Confidence 3
No 185
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.05 E-value=6.7e-10 Score=87.88 Aligned_cols=72 Identities=17% Similarity=0.228 Sum_probs=61.7
Q ss_pred ceeeEEEe---CCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcC-------eec-CCCCcccccCCCCCCEEE
Q 012749 380 GMQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-------KQL-EDGRTLADYNIQKESTLH 448 (457)
Q Consensus 380 ~~~i~v~~---~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g-------~~L-~d~~tL~~~~i~~~~~i~ 448 (457)
.+.|+|++ .+|+.+...+++++||++||.+|+..+|+|+..|+|.|.+ ..| +|..+|++||+++|++|+
T Consensus 9 ~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~ 88 (97)
T 1wjn_A 9 LLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLL 88 (97)
T ss_dssp EEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEE
T ss_pred cEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEE
Confidence 35666665 4677899999999999999999999999999999999873 235 577899999999999999
Q ss_pred EEE
Q 012749 449 LVL 451 (457)
Q Consensus 449 l~~ 451 (457)
|.-
T Consensus 89 V~d 91 (97)
T 1wjn_A 89 VRW 91 (97)
T ss_dssp EEC
T ss_pred EEe
Confidence 875
No 186
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.02 E-value=1.6e-09 Score=87.01 Aligned_cols=77 Identities=17% Similarity=0.385 Sum_probs=73.6
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCC
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 455 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~G 455 (457)
..++|.|++.+|+...+.|.+++++..|+...+++.|++++.++++|+|+.|.++.|.+++++++|++|++..+..|
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~G 115 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQCG 115 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCCC
T ss_pred CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999998876
No 187
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.93 E-value=1.5e-09 Score=93.63 Aligned_cols=79 Identities=11% Similarity=0.285 Sum_probs=74.2
Q ss_pred cCceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012749 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 457 (457)
+..++|.|+ .+|+...++|.+++++..|+...+++.|++++.++++|+|+.|.++.|.+++++++||+|++...++||.
T Consensus 55 ~e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG~ 133 (207)
T 3tix_A 55 ETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGL 133 (207)
T ss_dssp CCEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTTG
T ss_pred CCcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 345788887 4899999999999999999999999999999999999999999999999999999999999999999994
No 188
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.93 E-value=3.1e-09 Score=94.05 Aligned_cols=78 Identities=13% Similarity=0.276 Sum_probs=73.9
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 457 (457)
..++|.|+ .+|+...++|.+++++..|+...+++.|+|++++|++|+|+.|.++.|.+++++++|++|++..+++||.
T Consensus 28 ~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~ 105 (200)
T 3pge_A 28 THINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGG 105 (200)
T ss_dssp CCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC
T ss_pred CeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCc
Confidence 45788887 4899999999999999999999999999999999999999999999999999999999999999999994
No 189
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=98.91 E-value=1.8e-06 Score=88.88 Aligned_cols=346 Identities=12% Similarity=0.173 Sum_probs=223.9
Q ss_pred EEEEEcCCCCHHHHHHHHhhhhCCCCCCcEEEec-Ccc-------c-C----CCCcccccccccCCcceEEEEe------
Q 012749 89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQ-------L-E----DGRTLADYNIQKESTLHLVLRL------ 149 (457)
Q Consensus 89 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~-g~~-------L-~----d~~tl~~y~i~~~s~i~l~~~~------ 149 (457)
..+.|..+.|+.+||+++++..|+|+++|||..- .++ + + .+.++.++.- .++.+.+-+..
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~~-~~~~~~lflE~~~~~~~ 116 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSD-NENPWTIFLETVDPELA 116 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHHT-SCSSEEEEEEECCHHHH
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHhc-cCCceEEEEEecccccC
Confidence 4678999999999999999999999999998622 111 1 1 1223333321 23333333321
Q ss_pred -----------ecceeeeeeecC--CceEE----EeecCCchHHHHHHHHhhhhCCCCCceEEEEC------Ceecc-cC
Q 012749 150 -----------RGGMQIFVKTLT--GKTIT----LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA------GKQLE-DG 205 (457)
Q Consensus 150 -----------~~~~~i~V~~~~--g~~~~----~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~------g~~L~-d~ 205 (457)
...+.|++|..+ .+++. +.|+..++|.++-..|.+..|+|++.-..+|. -..|+ ..
T Consensus 117 ~~~~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~ 196 (530)
T 2ylm_A 117 ASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYD 196 (530)
T ss_dssp TTTCCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSS
T ss_pred CccccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEccccc
Confidence 113678888764 34443 57889999999999999999999987666664 24466 57
Q ss_pred cccccc--CcCcCcEEEEEEEec-C-----------------CeeEEEEc---cCCceEEEEeecCccHHHHHHHHhhhc
Q 012749 206 RTLADY--NIQKESTLHLVLRLR-G-----------------GMQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKE 262 (457)
Q Consensus 206 ~tL~~y--~I~~~~~i~l~~~~~-~-----------------~~~i~V~~---~~g~~~~~~v~~~~tV~~lK~~I~~~~ 262 (457)
.|+.+. .+.+|+.|.+-.... . .+.|.++. .+...+.++++...|-.+|.+.+.++.
T Consensus 197 ~t~~~~~~eL~~GdII~fQ~~~~~~~~~~y~~v~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~~l 276 (530)
T 2ylm_A 197 VSLDKALDELMDGDIIVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRL 276 (530)
T ss_dssp SBHHHHSTTCCTTEEEEEEECCGGGGGSSSCSHHHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHHHH
T ss_pred ccHHHHHhcccCCCEEEEEecCCccccccCCCHHHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHHHh
Confidence 899999 999999986655432 1 12333332 346679999999999999999999999
Q ss_pred CCCCCCeEEEeC----Ccc-----cCCCcccccccc----CCCCeEEEEEe--------ecCceeeEEEecCC--cEEEE
Q 012749 263 GIPPDQQRLIFA----GKQ-----LEDGRTLADYNI----QKESTLHLVLR--------LRGGMQIFVKTLTG--KTITL 319 (457)
Q Consensus 263 ~ip~~~q~L~~~----g~~-----L~d~~tl~~~~i----~~~~tl~l~~~--------~~~~~~i~i~~~~g--~~~~l 319 (457)
+++|..-||.-. |.. ...+.+|.+.=- ..-+.+++..- ....+.|+....+. +.+.+
T Consensus 277 ~~dP~~lRf~~~~~~~~~p~~~i~~~~~~~L~d~l~~~~~~~~~~l~YevL~ipl~ElE~~r~~kv~w~~~~~~~~~~~l 356 (530)
T 2ylm_A 277 NTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFENRRSFKCIWLNSQFREEEITL 356 (530)
T ss_dssp TSCGGGEEEECCCTTSCSCCSBCCTTCCSCHHHHSTTSCSSSCCEEEEEECSSCHHHHHSBCCEEEEEECTTSCEEEEEE
T ss_pred CCCchhEEEEecccccCCCCCccccCCCCcHHHHhhcccCCCCCeEEEEECCCCHHHHhhCceEEEEEECCCCceEEEEE
Confidence 999998887622 221 222344433211 11244544321 02234443332221 36778
Q ss_pred EeecCccHHHHHHHhhcccCCCC---CCceEE--ecCe---eccCCCcccccccccCceEEEEEEec--------Cceee
Q 012749 320 EVESSDTIDNVKAKIQDKEGIPP---DQQRLI--FAGK---QLEDGRTLADYNIQKESTLHLVLRLR--------GGMQI 383 (457)
Q Consensus 320 ~v~~~~Tv~~lK~~I~~~~~ip~---~~q~l~--~~g~---~L~d~~~L~~~~i~~~~~l~l~~~~~--------~~~~i 383 (457)
.++.+.||.||-+.+..+.+++. .+-++. ++++ +++++.+++..+=....++++..-+. ..+-|
T Consensus 357 ~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~rieeip~ee~~~~~~~~~li 436 (530)
T 2ylm_A 357 YPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKENEMLV 436 (530)
T ss_dssp CCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEEEEEECCGGGSSCCTTTEEEE
T ss_pred EcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccccccccceEEEEECCHHHhccCCCCcEEE
Confidence 89999999999999999999974 344444 5554 46777777765432244454432111 12333
Q ss_pred EEEe-------CCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCe---E--EEEcCe--ecCCCCc
Q 012749 384 FVKT-------LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ---R--LIFAGK--QLEDGRT 435 (457)
Q Consensus 384 ~v~~-------~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q---~--l~~~g~--~L~d~~t 435 (457)
.|-. .-|..+.+.|.+++|+.++|++|.+++|++...+ + ++-.++ .++|+..
T Consensus 437 ~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv~~keF~K~Kfa~v~~~~~~yl~d~d~ 502 (530)
T 2ylm_A 437 TVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEY 502 (530)
T ss_dssp EEEEESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHCCCHHHHTTCEEEEEETTEEEECCTTTC
T ss_pred EEEEeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhCCCHhhhhhEEEEEEECCcccccCCccc
Confidence 4421 1366889999999999999999999999986533 3 343444 5777553
No 190
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.81 E-value=5.4e-10 Score=97.75 Aligned_cols=80 Identities=13% Similarity=0.297 Sum_probs=1.5
Q ss_pred ecCceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 377 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 377 ~~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
++..|+|.| ..+|+...++|.+++++..|+...+++.|++++.+++.|+|+.+.++.|.+++++++|++|++..+++||
T Consensus 18 p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG 96 (227)
T 3v7o_A 18 PETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (227)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred CCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCC
Confidence 345688899 7789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 012749 457 F 457 (457)
Q Consensus 457 ~ 457 (457)
+
T Consensus 97 ~ 97 (227)
T 3v7o_A 97 L 97 (227)
T ss_dssp C
T ss_pred c
Confidence 5
No 191
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.80 E-value=1.2e-08 Score=80.57 Aligned_cols=73 Identities=16% Similarity=0.234 Sum_probs=62.1
Q ss_pred ceEEEEEc---cCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCcEEEecCc-------cc-CCCCcccccccccCCcce
Q 012749 76 GMQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-------QL-EDGRTLADYNIQKESTLH 144 (457)
Q Consensus 76 ~~~i~vk~---~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~-------~L-~d~~tl~~y~i~~~s~i~ 144 (457)
.+.|+|+. .+|..+...++++.||++||.+|+...|+|+..|+|.|.+. .| +|..+|++|++.+|++||
T Consensus 9 ~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~ 88 (97)
T 1wjn_A 9 LLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLL 88 (97)
T ss_dssp EEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEE
T ss_pred cEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEE
Confidence 35666664 46788999999999999999999999999999999998731 24 678999999999999999
Q ss_pred EEEE
Q 012749 145 LVLR 148 (457)
Q Consensus 145 l~~~ 148 (457)
+...
T Consensus 89 V~d~ 92 (97)
T 1wjn_A 89 VRWS 92 (97)
T ss_dssp EECC
T ss_pred EEec
Confidence 9763
No 192
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=98.72 E-value=1.3e-05 Score=82.57 Aligned_cols=331 Identities=13% Similarity=0.171 Sum_probs=214.6
Q ss_pred cEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEE--------ccC-----CCccccccccccccceEEEee----
Q 012749 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ--------LED-----GRTLADYNIQKESTLHLVLRL---- 73 (457)
Q Consensus 11 ~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~--------L~~-----~~tl~~y~I~~~sti~l~~~~---- 73 (457)
...++.|....|+.++|+.|.+..|+|+++|||+.-... +.+ +.++.++. ...+.+.+.+..
T Consensus 36 ~~~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~-~~~~~~~lflE~~~~~ 114 (530)
T 2ylm_A 36 KYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELS-DNENPWTIFLETVDPE 114 (530)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHH-TSCSSEEEEEEECCHH
T ss_pred CcceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHh-ccCCceEEEEEecccc
Confidence 445789999999999999999999999999999863221 111 11222221 122234444321
Q ss_pred -------------cCceEEEEEccC--CcEE----EEEEcCCCCHHHHHHHHhhhhCCCCCCcEEEec------CcccC-
Q 012749 74 -------------RGGMQIFVKTLT--GKTI----TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA------GKQLE- 127 (457)
Q Consensus 74 -------------~~~~~i~vk~~~--g~~~----~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~------g~~L~- 127 (457)
.+.+-||+|..+ .+.+ .+.|+.+++|.++-..|.++.|+|++.-..+|. ...|+
T Consensus 115 ~~~~~~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~ 194 (530)
T 2ylm_A 115 LAASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQD 194 (530)
T ss_dssp HHTTTCCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCC
T ss_pred cCCccccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEccc
Confidence 124778888644 2332 367899999999999999999999988777765 24466
Q ss_pred CCCccccc--ccccCCcceEEEEee------------------cceeeeeee---cCCceEEEeecCCchHHHHHHHHhh
Q 012749 128 DGRTLADY--NIQKESTLHLVLRLR------------------GGMQIFVKT---LTGKTITLEVESSDTIDNVKAKIQD 184 (457)
Q Consensus 128 d~~tl~~y--~i~~~s~i~l~~~~~------------------~~~~i~V~~---~~g~~~~~~v~~~~tV~~lK~~I~~ 184 (457)
.+.|+.+. ++.+|+.|..-.... ..+.|.++. ++...+.++++...|-.++-++|.+
T Consensus 195 ~~~t~~~~~~eL~~GdII~fQ~~~~~~~~~~y~~v~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~ 274 (530)
T 2ylm_A 195 YDVSLDKALDELMDGDIIVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQ 274 (530)
T ss_dssp SSSBHHHHSTTCCTTEEEEEEECCGGGGGSSSCSHHHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHH
T ss_pred ccccHHHHHhcccCCCEEEEEecCCccccccCCCHHHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHH
Confidence 57899999 999999887765432 123444443 2356799999999999999999999
Q ss_pred hhCCCCCceEEEEC----Ce---e--cccCccccccCc----CcCcEEEEEEEec---------CCeeEEEEccCC--ce
Q 012749 185 KEGIPPDQQRLIFA----GK---Q--LEDGRTLADYNI----QKESTLHLVLRLR---------GGMQIFVKTLTG--KT 240 (457)
Q Consensus 185 ~~gip~~~q~L~~~----g~---~--L~d~~tL~~y~I----~~~~~i~l~~~~~---------~~~~i~V~~~~g--~~ 240 (457)
+.++.|+..||.-. |+ . ...+.+|.+.=- .....+..- .++ ..+.|+....+. ..
T Consensus 275 ~l~~dP~~lRf~~~~~~~~~p~~~i~~~~~~~L~d~l~~~~~~~~~~l~Ye-vL~ipl~ElE~~r~~kv~w~~~~~~~~~ 353 (530)
T 2ylm_A 275 RLNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQ-QLKMKITDFENRRSFKCIWLNSQFREEE 353 (530)
T ss_dssp HHTSCGGGEEEECCCTTSCSCCSBCCTTCCSCHHHHSTTSCSSSCCEEEEE-ECSSCHHHHHSBCCEEEEEECTTSCEEE
T ss_pred HhCCCchhEEEEecccccCCCCCccccCCCCcHHHHhhcccCCCCCeEEEE-ECCCCHHHHhhCceEEEEEECCCCceEE
Confidence 99999988877521 21 1 122344443211 111223221 111 123343333222 26
Q ss_pred EEEEeecCccHHHHHHHHhhhcCCCC---CCeEEE--eCCc---ccCCCccccccccCCCCeEEEEEee--------cCc
Q 012749 241 ITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLI--FAGK---QLEDGRTLADYNIQKESTLHLVLRL--------RGG 304 (457)
Q Consensus 241 ~~~~v~~~~tV~~lK~~I~~~~~ip~---~~q~L~--~~g~---~L~d~~tl~~~~i~~~~tl~l~~~~--------~~~ 304 (457)
+.+-+..+.||++|-+.+..+.+++. ...++. ++++ .+.++.++...+=....++++.--. ...
T Consensus 354 ~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~rieeip~ee~~~~~~~~ 433 (530)
T 2ylm_A 354 ITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKENE 433 (530)
T ss_dssp EEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEEEEEECCGGGSSCCTTTE
T ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccccccccceEEEEECCHHHhccCCCCc
Confidence 67778899999999999999999874 445554 4554 3666667765432223444332211 111
Q ss_pred eeeEEEe-------cCCcEEEEEeecCccHHHHHHHhhcccCCCCC
Q 012749 305 MQIFVKT-------LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 343 (457)
Q Consensus 305 ~~i~i~~-------~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~ 343 (457)
+-|.|-. .-|..|.+.+.++.|+.++|++|++++|||..
T Consensus 434 ~li~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv~~k 479 (530)
T 2ylm_A 434 MLVTVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEK 479 (530)
T ss_dssp EEEEEEEESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHCCCHH
T ss_pred EEEEEEEeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhCCCHh
Confidence 2233322 24778889999999999999999999999965
No 193
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.67 E-value=1e-07 Score=76.51 Aligned_cols=74 Identities=16% Similarity=0.384 Sum_probs=68.8
Q ss_pred CeeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEEEee
Q 012749 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 301 (457)
Q Consensus 228 ~~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~~~ 301 (457)
.+.|.|+..+|+.+.+.|.+.+++..|+...+++.|+|+.+++|+|.|+.+.++.|..++++.++++|+++..+
T Consensus 40 ~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 40 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 113 (115)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECC
T ss_pred eEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeec
Confidence 35677888899999999999999999999999999999999999999999999999999999999999887643
No 194
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.62 E-value=3e-07 Score=66.81 Aligned_cols=69 Identities=16% Similarity=0.320 Sum_probs=61.8
Q ss_pred eEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCC-CeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012749 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 383 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~-~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
+.++.....-+.+.|.++++|.+|....+.+.|||++ ..+|.|+|..|.++.++++|++++|+.|.+.+
T Consensus 12 ~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 12 LLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 4445444445889999999999999999999999999 99999999999999999999999999999875
No 195
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.49 E-value=7.1e-08 Score=72.92 Aligned_cols=71 Identities=14% Similarity=0.221 Sum_probs=60.7
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCee---c--CCCCcccccCCCCCCEEEEE
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ---L--EDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~---L--~d~~tL~~~~i~~~~~i~l~ 450 (457)
.+|.|.++..+| ++.+++++++|+.+|+.+|++.++++++.|.++++-.+ | .++.+|+++||+.|++|++.
T Consensus 3 ~~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 3 ESIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CcEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 358889999988 68889999999999999999999999999887765443 3 37789999999999999874
No 196
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.46 E-value=7.7e-07 Score=78.75 Aligned_cols=99 Identities=11% Similarity=0.255 Sum_probs=79.9
Q ss_pred CCeeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEEEeecCc--
Q 012749 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG-- 304 (457)
Q Consensus 227 ~~~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~~~~~~-- 304 (457)
.-+.+.|+ .+|+.+.+.+.+.+++..|+...+++.|+|+.+++|+|.|+.+.++.|..++++.+|++|+++..+.++
T Consensus 28 ~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~k 106 (200)
T 3pge_A 28 THINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGGG 106 (200)
T ss_dssp CCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC-
T ss_pred CeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCcC
Confidence 34667776 489999999999999999999999999999999999999999999999999999999999999987554
Q ss_pred --eeeEEEecCCcEEEEEeecCccH
Q 012749 305 --MQIFVKTLTGKTITLEVESSDTI 327 (457)
Q Consensus 305 --~~i~i~~~~g~~~~l~v~~~~Tv 327 (457)
+.+....-.| .-.+.+.++..+
T Consensus 107 d~v~Fs~~GD~G-~~~i~l~~~~~~ 130 (200)
T 3pge_A 107 ETIKFVADGDIG-SGSVIIKPFVDM 130 (200)
T ss_dssp CCEEEEEECSSC-EEEEEECCBCCS
T ss_pred ceEEEEeeccCC-eEEEEEecCCCC
Confidence 3444443333 334455554433
No 197
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.40 E-value=5.5e-07 Score=77.76 Aligned_cols=76 Identities=12% Similarity=0.291 Sum_probs=70.0
Q ss_pred CeeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEEEeecCc
Q 012749 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304 (457)
Q Consensus 228 ~~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~~~~~~ 304 (457)
.+.|.|+ .+|..+.+.|++++++..|+...+++.|+|+.+++|+|.|+.+.++.|..++++.++|+|+++..+.++
T Consensus 57 ~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG 132 (207)
T 3tix_A 57 HINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGG 132 (207)
T ss_dssp EEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTT
T ss_pred cEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 3566676 489999999999999999999999999999999999999999999999999999999999998877665
No 198
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.38 E-value=1.6e-06 Score=67.56 Aligned_cols=73 Identities=12% Similarity=0.273 Sum_probs=67.9
Q ss_pred cCceeeEEEeCCCC-EEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 012749 378 RGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 378 ~~~~~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~ 450 (457)
+..+.|.|+..+|+ ...+.|.+++++..|....+++.|++++..++.|+|..|.++.|.+++++++|++|.+.
T Consensus 23 ~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 23 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp CSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 45678888888885 78999999999999999999999999999999999999999999999999999999875
No 199
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.35 E-value=5.3e-08 Score=93.57 Aligned_cols=79 Identities=13% Similarity=0.320 Sum_probs=0.7
Q ss_pred cCceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012749 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 457 (457)
...++|.|++ +|+...++|.+++++..|+...+++.|++++.+++.|+|+.+.++.|.+++++++|++|++..+++|||
T Consensus 19 ~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~~ 97 (360)
T 3ix6_A 19 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGM 97 (360)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred CCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCchH
Confidence 4557788887 678889999999999999999999999999999999999999999999999999999999999999997
No 200
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.30 E-value=1.7e-06 Score=78.10 Aligned_cols=80 Identities=13% Similarity=0.288 Sum_probs=74.4
Q ss_pred ecCceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 377 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 377 ~~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
....+.|.|++ +|+...+++..++++..|+...|++.|+|+++++++|+|+.+.++.|..+++++++++|.+.....||
T Consensus 18 ~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~Gg 96 (209)
T 3uf8_A 18 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (209)
T ss_dssp CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTTC
T ss_pred CCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhcccccc
Confidence 34567788887 77888999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 012749 457 F 457 (457)
Q Consensus 457 ~ 457 (457)
.
T Consensus 97 ~ 97 (209)
T 3uf8_A 97 S 97 (209)
T ss_dssp C
T ss_pred c
Confidence 4
No 201
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.19 E-value=4.5e-06 Score=64.17 Aligned_cols=55 Identities=18% Similarity=0.247 Sum_probs=45.9
Q ss_pred cCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEcc--CCCccccccc
Q 012749 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--DGRTLADYNI 61 (457)
Q Consensus 7 ~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~--~~~tl~~y~I 61 (457)
...+..+++.+.+.+||..+|++|++++|||+.+|+|+|.|+.|. .++.-..|.-
T Consensus 20 ~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~ 76 (94)
T 4efo_A 20 LQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPK 76 (94)
T ss_dssp TTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCC
T ss_pred cccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCC
Confidence 356889999999999999999999999999999999999998865 3344444443
No 202
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.18 E-value=2.2e-07 Score=81.36 Aligned_cols=82 Identities=12% Similarity=0.312 Sum_probs=1.2
Q ss_pred EeecCceEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCcEEEecCcccCCCCcccccccccCCcceEEEEee
Q 012749 71 LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (457)
Q Consensus 71 ~~~~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~ 150 (457)
..+...|+|.| ..+|+.+.+.|.+++++..|++...++.|+++++++++|+|+.+.++.|.+++++.+|++|++.....
T Consensus 16 ~~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~ 94 (227)
T 3v7o_A 16 VKPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 94 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEeccc
Confidence 34456788888 78899999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cce
Q 012749 151 GGM 153 (457)
Q Consensus 151 ~~~ 153 (457)
||.
T Consensus 95 GG~ 97 (227)
T 3v7o_A 95 GGL 97 (227)
T ss_dssp -CC
T ss_pred CCc
Confidence 774
No 203
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.08 E-value=2.1e-06 Score=64.80 Aligned_cols=71 Identities=14% Similarity=0.221 Sum_probs=58.8
Q ss_pred CceEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCcEEEecCcc---c--CCCCcccccccccCCcceEE
Q 012749 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ---L--EDGRTLADYNIQKESTLHLV 146 (457)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~---L--~d~~tl~~y~i~~~s~i~l~ 146 (457)
+.|.|.|++.+| .+.+++++++|+.+|+++|++..+++++.|.+.+.... | .++.+++++|+++|+.+++.
T Consensus 3 ~~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 3 ESIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CcEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 347788888887 56788999999999999999999999999888755433 3 47889999999999998874
No 204
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.08 E-value=2.6e-05 Score=56.73 Aligned_cols=70 Identities=16% Similarity=0.316 Sum_probs=63.0
Q ss_pred eeeeeecCCceEEEeecCCchHHHHHHHHhhhhCCCCC-ceEEEECCeecccCccccccCcCcCcEEEEEE
Q 012749 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223 (457)
Q Consensus 154 ~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~-~q~L~~~g~~L~d~~tL~~y~I~~~~~i~l~~ 223 (457)
.+.++......+.+.+.++.+|.+|-+.-..+.|||++ ..+|.|.|..|+.+.++++|++.+++.|.+++
T Consensus 11 ~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 11 TLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 44555566677899999999999999999999999999 89999999999999999999999999998764
No 205
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.03 E-value=2.4e-05 Score=59.75 Aligned_cols=72 Identities=14% Similarity=0.276 Sum_probs=66.7
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
..++|.|+. .|....+.+..++....|....+++.|++++..++.|+|..+.++.|.+++++++|++|.+..
T Consensus 20 ~~IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 20 RLFPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp CCEEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred CeEEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence 447788884 688999999999999999999999999999999999999999999999999999999998764
No 206
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.00 E-value=1.7e-05 Score=60.99 Aligned_cols=65 Identities=18% Similarity=0.264 Sum_probs=49.6
Q ss_pred CCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecC--CCCcccccCC-CCCCEEEEEEe
Q 012749 388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--DGRTLADYNI-QKESTLHLVLR 452 (457)
Q Consensus 388 ~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~--d~~tL~~~~i-~~~~~i~l~~r 452 (457)
..++.+.+.+.+++||..+|++|++.+|||+++|+|+|.|+.|. .+..-..|-- ...+-|.|..+
T Consensus 21 ~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s~ 88 (94)
T 4efo_A 21 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVSL 88 (94)
T ss_dssp TTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEEC
T ss_pred ccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEec
Confidence 45778999999999999999999999999999999999998765 4444444432 23445555443
No 207
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=97.97 E-value=0.00036 Score=68.71 Aligned_cols=136 Identities=24% Similarity=0.357 Sum_probs=107.4
Q ss_pred CcEEEEEeecCccHHHHHHHhhcccC----CCCCCceEEec------CeeccCCCcccccccccCceEEEEEEecCceee
Q 012749 314 GKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIFA------GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 383 (457)
Q Consensus 314 g~~~~l~v~~~~Tv~~lK~~I~~~~~----ip~~~q~l~~~------g~~L~d~~~L~~~~i~~~~~l~l~~~~~~~~~i 383 (457)
+-+-++.+++++||.|.-..|.++.. .+...--|.|. |.=|+++++|..|++.++..+.... .++.+
T Consensus 12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~---~~~~~ 88 (371)
T 3ivf_A 12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRK---KQRPL 88 (371)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEE---CEEEE
T ss_pred ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccC---ceeEE
Confidence 66778999999999999999998864 34555567772 3348889999999999999888875 46789
Q ss_pred EEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCC-CCeEEEEcC---------eecCCCCcccccCCCCCCEEEEEEe
Q 012749 384 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAG---------KQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 384 ~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~-~~q~l~~~g---------~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
.|..++|....+.+++++|+.++-..|+++.|+.. +.+-|.+.. .-|+.++++.+.+.....++++..|
T Consensus 89 ~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~frvK 167 (371)
T 3ivf_A 89 KIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLLRRK 167 (371)
T ss_dssp EEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEEEEE
Confidence 99999999999999999999999999999999864 344565532 2355667788877766677666544
No 208
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.97 E-value=2.1e-05 Score=59.57 Aligned_cols=75 Identities=20% Similarity=0.239 Sum_probs=69.3
Q ss_pred CCeeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEEEee
Q 012749 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 301 (457)
Q Consensus 227 ~~~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~~~ 301 (457)
++|.|.|-..+++..++.|.++.++.++-++.++++|++++++.|.|+++.++-+.+++.-|+.+++.|.|+...
T Consensus 8 ~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s 82 (90)
T 2al3_A 8 GGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVS 82 (90)
T ss_dssp --CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSS
T ss_pred CccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEcc
Confidence 467888989999999999999999999999999999999999999999999999999999999999999987654
No 209
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=97.94 E-value=0.00042 Score=68.19 Aligned_cols=135 Identities=24% Similarity=0.345 Sum_probs=105.0
Q ss_pred CceEEEeecCCchHHHHHHHHhhhhC----CCCCceEEEE------CCeecccCccccccCcCcCcEEEEEEEecCCeeE
Q 012749 162 GKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 231 (457)
Q Consensus 162 g~~~~~~v~~~~tV~~lK~~I~~~~g----ip~~~q~L~~------~g~~L~d~~tL~~y~I~~~~~i~l~~~~~~~~~i 231 (457)
+.+-++.++++.||.++...|.++.. .+.++.-|.- .|+-|+++++|..|++.+++.+....++ +.+
T Consensus 12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~~~---~~~ 88 (371)
T 3ivf_A 12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRKKQ---RPL 88 (371)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEECE---EEE
T ss_pred ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccCce---eEE
Confidence 56678999999999999999988764 3566777765 3577999999999999999988776544 578
Q ss_pred EEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCC-eEEEeCC---------cccCCCccccccccCCCCeEEEEE
Q 012749 232 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAG---------KQLEDGRTLADYNIQKESTLHLVL 299 (457)
Q Consensus 232 ~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~-q~L~~~g---------~~L~d~~tl~~~~i~~~~tl~l~~ 299 (457)
.|..++|....+.++++.|+.++-..|+++.|+.... .-|.+.. .-|+..+++...+.....++++..
T Consensus 89 ~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~frv 166 (371)
T 3ivf_A 89 KIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLLRR 166 (371)
T ss_dssp EEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEEEE
T ss_pred EEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEEEE
Confidence 8999999999999999999999999999999986544 4455432 124556677776665555665543
No 210
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.85 E-value=8.1e-05 Score=66.98 Aligned_cols=91 Identities=14% Similarity=0.310 Sum_probs=76.7
Q ss_pred cCCeeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEEEeecCce
Q 012749 226 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 305 (457)
Q Consensus 226 ~~~~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~~~~~~~ 305 (457)
...+.+.|+. +|+.+.+.+.+++.+..|+...+++.|+|+++++|.|.|+.+.++.|..+....++++|.+...+.++.
T Consensus 19 ~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~Gg~ 97 (209)
T 3uf8_A 19 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGS 97 (209)
T ss_dssp CSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTTCC
T ss_pred CCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccccccc
Confidence 3445666766 778889999999999999999999999999999999999999999999999999999999988777665
Q ss_pred eeEEEecCCcEEE
Q 012749 306 QIFVKTLTGKTIT 318 (457)
Q Consensus 306 ~i~i~~~~g~~~~ 318 (457)
.+ +++.+|-.+.
T Consensus 98 t~-~~~~sGl~~~ 109 (209)
T 3uf8_A 98 TV-VTTESGLKYE 109 (209)
T ss_dssp CC-EECTTSCEEE
T ss_pred cc-cCCCCceEEE
Confidence 43 4455554443
No 211
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=97.84 E-value=6.8e-05 Score=58.30 Aligned_cols=71 Identities=13% Similarity=0.287 Sum_probs=64.3
Q ss_pred CeeEEEEccCCc-eEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEE
Q 012749 228 GMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298 (457)
Q Consensus 228 ~~~i~V~~~~g~-~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~ 298 (457)
.+.+.|+..+|+ .+.+.|.+.++++.|....+++.|+++...+|+|.|+.+.++.|..+.++.++++|.+.
T Consensus 25 ~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 25 QLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred eEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 355667777884 89999999999999999999999999999999999999999999999999999998654
No 212
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.83 E-value=2.4e-06 Score=84.97 Aligned_cols=78 Identities=12% Similarity=0.291 Sum_probs=0.0
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 457 (457)
..+.|.|++ +|....++|.+++++..|+...+++.|+++.+++++|+|+.+.++.|.+++++++|++|++....+||.
T Consensus 29 ~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~ 106 (389)
T 4da1_A 29 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGE 106 (389)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecccccc
Confidence 345677776 677888999999999999999999999999999999999999999999999999999999999999984
No 213
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.77 E-value=8.1e-05 Score=56.31 Aligned_cols=74 Identities=20% Similarity=0.252 Sum_probs=68.6
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
..|.+.|-+.+++...+.|.|++++.|+-+..++++|+++++-.|.|+++.|+-+..+...|+-+|+.+.|+..
T Consensus 8 ~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~ 81 (90)
T 2al3_A 8 GGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV 81 (90)
T ss_dssp --CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred CccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999998754
No 214
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.74 E-value=4e-05 Score=62.48 Aligned_cols=71 Identities=27% Similarity=0.393 Sum_probs=60.6
Q ss_pred eeEEEecCCcEEEEEeecCccHHHHHHHhhcccCCCCC-------------------------------------CceEE
Q 012749 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-------------------------------------QQRLI 348 (457)
Q Consensus 306 ~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~-------------------------------------~q~l~ 348 (457)
.+.|++++|...++.|+.+.||.+++..|+++.||+.. +|+|.
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 58899999999999999999999999999999999965 33332
Q ss_pred e--cCeeccCCCcccccccccCceEEEEEE
Q 012749 349 F--AGKQLEDGRTLADYNIQKESTLHLVLR 376 (457)
Q Consensus 349 ~--~g~~L~d~~~L~~~~i~~~~~l~l~~~ 376 (457)
- ..+-|+++++|.++||.+++++.|+.+
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 1 125689999999999999999988764
No 215
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.63 E-value=7.5e-06 Score=78.72 Aligned_cols=86 Identities=13% Similarity=0.343 Sum_probs=3.0
Q ss_pred EeecCceEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCcEEEecCcccCCCCcccccccccCCcceEEEEee
Q 012749 71 LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (457)
Q Consensus 71 ~~~~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~ 150 (457)
..+...+.|.|+. +|+.+.+.|.++++...|++...++.|++++++++.|+|+.+.++.|.+++++.+|++|++..+..
T Consensus 16 ~~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~ 94 (360)
T 3ix6_A 16 VKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 94 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccC
Confidence 3445567788876 678899999999999999999999999999999999999999999999999999999999999988
Q ss_pred cceeeee
Q 012749 151 GGMQIFV 157 (457)
Q Consensus 151 ~~~~i~V 157 (457)
|||..+.
T Consensus 95 g~~~~Yl 101 (360)
T 3ix6_A 95 GGMRTYL 101 (360)
T ss_dssp --CHHHH
T ss_pred chHHHHH
Confidence 8876554
No 216
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.56 E-value=0.0001 Score=60.06 Aligned_cols=71 Identities=27% Similarity=0.393 Sum_probs=58.6
Q ss_pred eeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCC-------------------------------------CeEEE
Q 012749 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-------------------------------------QQRLI 424 (457)
Q Consensus 382 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~-------------------------------------~q~l~ 424 (457)
.+.|+.++|+..++.|+.+.+|.+++..||.+.||+.. .++|.
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 47889999999999999999999999999999999855 23332
Q ss_pred E--cCeecCCCCcccccCCCCCCEEEEEEe
Q 012749 425 F--AGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 425 ~--~g~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
. ++.-|+++.||.++||.++++|.|..+
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 1 124567789999999999999877654
No 217
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.46 E-value=0.00053 Score=52.36 Aligned_cols=70 Identities=14% Similarity=0.304 Sum_probs=64.0
Q ss_pred eeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEEE
Q 012749 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 299 (457)
Q Consensus 229 ~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~ 299 (457)
+.+.|+ .+|..+.+.+..++..+.|....+++.|++++.-+|+|.|..+.++.|..+.++.++++|..+.
T Consensus 22 IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 22 FPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp EEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred EEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence 455566 4788999999999999999999999999999999999999999999999999999999997654
No 218
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.40 E-value=0.0004 Score=51.81 Aligned_cols=62 Identities=15% Similarity=0.219 Sum_probs=53.3
Q ss_pred CCCCEEEEEecCCchHHHHHHHHhhhcCCCCC-----CeEEEEcCeecCCCCcccccCCCCCCEEEE
Q 012749 388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-----QQRLIFAGKQLEDGRTLADYNIQKESTLHL 449 (457)
Q Consensus 388 ~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~-----~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l 449 (457)
..|+++.++++...||..|+..+.+.++++.. ..++.-.|..|.++++|++|+|.+||.|.+
T Consensus 14 y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 14 YNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp TTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred cCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 47899999999999999999999999988752 234445677899999999999999999865
No 219
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.02 E-value=9.9e-05 Score=73.18 Aligned_cols=79 Identities=11% Similarity=0.342 Sum_probs=0.0
Q ss_pred eeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEEEeecCceeeE
Q 012749 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 308 (457)
Q Consensus 229 ~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~~~~~~~~i~ 308 (457)
+.+.|+. .|..+.+.|.+.++...|+...+++.|+|+.+++|+|+|+.+.++.|..+.++.++++|.++..+.++...+
T Consensus 31 i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~n~~ 109 (389)
T 4da1_A 31 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGENLY 109 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccccccc
Confidence 4455655 678889999999999999999999999999999999999999999999999999999999888775554433
No 220
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.02 E-value=0.0036 Score=47.33 Aligned_cols=72 Identities=18% Similarity=0.314 Sum_probs=61.2
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEE--EcCeecC---CCCcccccCCCCCCEEEEEE
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~--~~g~~L~---d~~tL~~~~i~~~~~i~l~~ 451 (457)
+...|-|+..+|+...-....++||.+|...|.. .+.++..+.|. |-.+.+. .+.||.++|+.+.++|.|.-
T Consensus 6 ~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 6 PVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 4567889999999899999999999999999998 67888889988 4467783 46799999999999998764
No 221
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=96.73 E-value=0.0074 Score=45.54 Aligned_cols=70 Identities=19% Similarity=0.360 Sum_probs=59.5
Q ss_pred eeeEEEecCCcEEEEEeecCccHHHHHHHhhcccCCCCCCceEE--ecCeec---cCCCcccccccccCceEEEEE
Q 012749 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVL 375 (457)
Q Consensus 305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L---~d~~~L~~~~i~~~~~l~l~~ 375 (457)
..|.|+..+|..+.-..+.++|+.+|..-|.. .+.++....|. |+.+.+ +.+++|.+.|+.++++|.+..
T Consensus 8 ~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 8 SKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 46888999999999999999999999999998 56677767777 677777 567999999999999988864
No 222
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=96.56 E-value=0.0072 Score=44.99 Aligned_cols=64 Identities=14% Similarity=0.236 Sum_probs=53.6
Q ss_pred EecCCcEEEEEeecCccHHHHHHHhhcccCCCCCCce-----EEecCeeccCCCcccccccccCceEEE
Q 012749 310 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-----LIFAGKQLEDGRTLADYNIQKESTLHL 373 (457)
Q Consensus 310 ~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~-----l~~~g~~L~d~~~L~~~~i~~~~~l~l 373 (457)
+.++++++-+.++...|+..|++.+.+-++++...-. ..-++..|.++..|++|++.+|+.|.+
T Consensus 12 ~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 12 KHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp TTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred eccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 3579999999999999999999999999887763211 225678899999999999999998864
No 223
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=95.93 E-value=0.021 Score=46.47 Aligned_cols=72 Identities=19% Similarity=0.323 Sum_probs=61.0
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEE--EcCeec--CC-CCcccccCCCCCCEEEEEE
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL--ED-GRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~--~~g~~L--~d-~~tL~~~~i~~~~~i~l~~ 451 (457)
+...|-||..+|+...-.+..++||.+|...|... +.++..+.|+ |-.+.| +| +.||.+.|+.+..+|.|..
T Consensus 42 ~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 42 PKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 45788999999999999999999999999999887 8888888887 457778 33 6799999999988887754
No 224
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=95.93 E-value=0.028 Score=44.65 Aligned_cols=72 Identities=15% Similarity=0.228 Sum_probs=61.4
Q ss_pred eeeEEEecCCcEEEEEeecCccHHHHHHHhhcccCCCCCCceEE--ecCeecc---CCCcccccccccCceEEEEEE
Q 012749 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVLR 376 (457)
Q Consensus 305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L~---d~~~L~~~~i~~~~~l~l~~~ 376 (457)
..|.|+..+|..+.-.++.++|+.+|..-|....+.+...-.|+ |+.+.+. .+++|.+.|+.+..+|.+...
T Consensus 14 t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 14 ARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp EEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 46889999999999999999999999999999877776666666 7777775 478999999999888888754
No 225
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=95.84 E-value=0.036 Score=43.95 Aligned_cols=73 Identities=15% Similarity=0.204 Sum_probs=61.4
Q ss_pred ceeeeeeecCCceEEEeecCCchHHHHHHHHhhhhCCCCCceEEE--ECCeecc---cCccccccCcCcCcEEEEEEE
Q 012749 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVLR 224 (457)
Q Consensus 152 ~~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~---d~~tL~~y~I~~~~~i~l~~~ 224 (457)
...|.|+.++|..+.-....++||.+|...|....+.+...+.|+ |-.+.+. .+.||.+.|+.+.+++.+...
T Consensus 13 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 13 IARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp CEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 367888899999999999999999999999998877777777886 5577775 368999999999988877654
No 226
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=95.82 E-value=0.026 Score=45.94 Aligned_cols=71 Identities=18% Similarity=0.330 Sum_probs=60.4
Q ss_pred eeeEEEecCCcEEEEEeecCccHHHHHHHhhcccCCCCCCceEE--ecCeec---cCCCcccccccccCceEEEEEE
Q 012749 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVLR 376 (457)
Q Consensus 305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L---~d~~~L~~~~i~~~~~l~l~~~ 376 (457)
..|.|+..+|..+.-.++.++|+.+|..-|... +.++..-.|+ |+.+.+ +.+.+|.+.|+.+..+|.+...
T Consensus 44 t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~~ 119 (124)
T 1wj4_A 44 AQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQES 119 (124)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEEc
Confidence 468899999999999999999999999999887 7766666676 778888 4589999999999888888753
No 227
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=95.63 E-value=0.13 Score=37.12 Aligned_cols=67 Identities=24% Similarity=0.337 Sum_probs=53.9
Q ss_pred ceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
.|+|+|....+ ...++++...|+.+|...+ ++++....+..||..+..+. -+++||.|.+.-...||
T Consensus 4 ~m~i~vNg~~~-~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V~GG 70 (70)
T 1ryj_A 4 GMKFTVITDDG-KKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVIYGG 70 (70)
T ss_dssp CEEEEEEETTE-EEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECTTCC
T ss_pred eEEEEEeCccC-ceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEeccccC
Confidence 58888886654 3567888889999999886 56778888889999987655 57789999998888877
No 228
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.48 E-value=0.026 Score=41.64 Aligned_cols=64 Identities=13% Similarity=0.227 Sum_probs=55.9
Q ss_pred ceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEc---CeecCCCCcccccCCCC
Q 012749 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQLEDGRTLADYNIQK 443 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~---g~~L~d~~tL~~~~i~~ 443 (457)
++++.|.....+...+.|+|..++++|--.|+++-.+.|++-.|... +.+|+=+++|.||||++
T Consensus 10 TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 10 TVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp CEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred EEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 45666777777789999999999999999999999999999999864 55788889999999985
No 229
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=95.22 E-value=0.1 Score=41.06 Aligned_cols=63 Identities=38% Similarity=0.494 Sum_probs=46.4
Q ss_pred CCEEEEEecCCchHHHHHHHHhhhc--CCC------CCCeEEEE----cCeecCCC-------------CcccccCCCCC
Q 012749 390 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF----AGKQLEDG-------------RTLADYNIQKE 444 (457)
Q Consensus 390 g~~~~l~v~~~~tV~~lK~~i~~~~--~ip------~~~q~l~~----~g~~L~d~-------------~tL~~~~i~~~ 444 (457)
+..+.++|-..+||.++|++|-+.. |.| ++...|-+ .|+.|.|. .||+.|+|.+|
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 4458888889999999999997764 444 34555665 35566653 48999999999
Q ss_pred CEEEEEEe
Q 012749 445 STLHLVLR 452 (457)
Q Consensus 445 ~~i~l~~r 452 (457)
+++.++-|
T Consensus 103 atl~l~~~ 110 (111)
T 4e71_A 103 ATLILSKV 110 (111)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEeC
Confidence 99988765
No 230
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=94.83 E-value=0.04 Score=43.32 Aligned_cols=64 Identities=34% Similarity=0.383 Sum_probs=43.8
Q ss_pred CCcEEEEEecCCCcHHHHHHHHhh--hhCCCCcc------ceEee----ccEEccCC-------------Cccccccccc
Q 012749 9 TGKTITLEVESSDTIDNVKAKIQD--KEGIPPDQ------QRLIF----AGKQLEDG-------------RTLADYNIQK 63 (457)
Q Consensus 9 ~g~~~~~~v~~~dtv~~ik~ki~~--~~gip~~~------q~l~~----~g~~L~~~-------------~tl~~y~I~~ 63 (457)
++..+++.|-..|||..+|+||-+ +.|.|.++ ..|-| .|+.|.|. +||++|+|.+
T Consensus 22 ~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 101 (111)
T 4e71_A 22 GVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRD 101 (111)
T ss_dssp CCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCT
T ss_pred CCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCC
Confidence 356788899999999999999965 35777654 33444 34556541 5899999999
Q ss_pred cccceEEEe
Q 012749 64 ESTLHLVLR 72 (457)
Q Consensus 64 ~sti~l~~~ 72 (457)
++++-++.+
T Consensus 102 gatl~l~~~ 110 (111)
T 4e71_A 102 GATLILSKV 110 (111)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEeC
Confidence 999987654
No 231
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=94.48 E-value=0.13 Score=40.72 Aligned_cols=71 Identities=18% Similarity=0.228 Sum_probs=58.0
Q ss_pred ceeeeeeecCCceEEEeecCCchHHHHHHHHhhhhCCCCCceEEE--ECCeecc--cCccccccCcCcCcEEEEEE
Q 012749 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--DGRTLADYNIQKESTLHLVL 223 (457)
Q Consensus 152 ~~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~--d~~tL~~y~I~~~~~i~l~~ 223 (457)
...|.|+.++|+.+.-....++||.+|...|... +.....+.|+ |-.+.+. .+.||.+.|+.+..++.+..
T Consensus 23 ~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 23 VVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp EEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 4678888999999999999999999999999865 5555677776 5577785 46899999999998886644
No 232
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=94.08 E-value=0.3 Score=35.86 Aligned_cols=58 Identities=19% Similarity=0.374 Sum_probs=50.5
Q ss_pred EEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEE
Q 012749 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298 (457)
Q Consensus 241 ~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~ 298 (457)
+.-.++-..++..||+.++.+.|++.+.+.+...+..|+++++|.+.|++-+..+.+.
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQin 62 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLS 62 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEE
Confidence 3445566778999999999999999999999999988999999999999988887653
No 233
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=94.04 E-value=0.21 Score=39.47 Aligned_cols=72 Identities=18% Similarity=0.221 Sum_probs=59.1
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEE--EcCeecC--CCCcccccCCCCCCEEEEEE
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--DGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~--~~g~~L~--d~~tL~~~~i~~~~~i~l~~ 451 (457)
+...|-||..+|+.+.-....++||.+|...|... +..+..+.|. |-.+.|. .+.||.++|+.+..+|.|.-
T Consensus 22 ~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 22 EVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp SEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 34678889999998899999999999999999965 5566778776 4466776 46799999999999987754
No 234
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=94.02 E-value=0.32 Score=44.04 Aligned_cols=65 Identities=20% Similarity=0.305 Sum_probs=53.4
Q ss_pred EEEEEecCCchHHHHHHHHhhhcCCCCC-CeEEEE-c----CeecCC-CCcccccCCCCCCEEEEEEecCCC
Q 012749 392 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-A----GKQLED-GRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~~ip~~-~q~l~~-~----g~~L~d-~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
.++..++..+||.+|+..++...+||++ ..||-. . ...|.| +.||.++++.++..|.+-.|..-|
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg 224 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDG 224 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTS
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 3567789999999999999999999997 577754 3 235665 479999999999999999886554
No 235
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=93.95 E-value=0.099 Score=46.95 Aligned_cols=65 Identities=23% Similarity=0.413 Sum_probs=53.1
Q ss_pred EEEEEecCCchHHHHHHHHhhhcCCCCC-CeEEE--E-cC--eecCC-CCcccccCCCCCCEEEEEEecCCC
Q 012749 392 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI--F-AG--KQLED-GRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~~ip~~-~q~l~--~-~g--~~L~d-~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
.+++.++..+||.+|+..++..++||++ ..||- + .+ ..|+| +.||.++++.++..|.+-.|...|
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg 212 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDG 212 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 4677889999999999999999999997 67764 2 22 35666 469999999999999999987665
No 236
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=93.89 E-value=0.39 Score=38.56 Aligned_cols=64 Identities=27% Similarity=0.405 Sum_probs=48.1
Q ss_pred CCCEEEEEecCCchHHHHHHHHhhhc--CCC------CCCeEEEE----cCe-ecCCC-------------CcccccCCC
Q 012749 389 TGKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF----AGK-QLEDG-------------RTLADYNIQ 442 (457)
Q Consensus 389 ~g~~~~l~v~~~~tV~~lK~~i~~~~--~ip------~~~q~l~~----~g~-~L~d~-------------~tL~~~~i~ 442 (457)
.+....++|-..+||.++|++|-+.. +.| ++...|-+ .|+ .|.|. .||+.|+|.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 34568888889999999999997764 444 35666766 233 36542 589999999
Q ss_pred CCCEEEEEEe
Q 012749 443 KESTLHLVLR 452 (457)
Q Consensus 443 ~~~~i~l~~r 452 (457)
+|+++.++.+
T Consensus 95 dgatv~l~~~ 104 (127)
T 3h6n_A 95 EGASLAMSLI 104 (127)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEc
Confidence 9999999765
No 237
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=93.51 E-value=0.21 Score=40.73 Aligned_cols=65 Identities=32% Similarity=0.512 Sum_probs=47.0
Q ss_pred CcEEEEEecCCCcHHHHHHHHhhh--hCCCCcc------ceEee----ccEE-ccCC-------------Cccccccccc
Q 012749 10 GKTITLEVESSDTIDNVKAKIQDK--EGIPPDQ------QRLIF----AGKQ-LEDG-------------RTLADYNIQK 63 (457)
Q Consensus 10 g~~~~~~v~~~dtv~~ik~ki~~~--~gip~~~------q~l~~----~g~~-L~~~-------------~tl~~y~I~~ 63 (457)
...+++.|-..|||..+|+||-+. -|+|.++ --|-| .|+. |.|. +||++|+|.+
T Consensus 40 ~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D 119 (138)
T 2r2o_A 40 AQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 119 (138)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred CCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence 367889999999999999999764 6677643 12333 2433 5542 4899999999
Q ss_pred cccceEEEeec
Q 012749 64 ESTLHLVLRLR 74 (457)
Q Consensus 64 ~sti~l~~~~~ 74 (457)
++++-++.+..
T Consensus 120 ga~l~l~~~~~ 130 (138)
T 2r2o_A 120 GATVALVPCLT 130 (138)
T ss_dssp TCEEEEEEC--
T ss_pred CCEEEEEECCC
Confidence 99999887643
No 238
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=93.38 E-value=0.22 Score=40.56 Aligned_cols=69 Identities=19% Similarity=0.294 Sum_probs=55.9
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhc-CCCCCCeEEEE--cCeecCC-CCcccccCCCCCCEE
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLIF--AGKQLED-GRTLADYNIQKESTL 447 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~-~ip~~~q~l~~--~g~~L~d-~~tL~~~~i~~~~~i 447 (457)
+...|-||..+|+...-.+..++||.+|...|.... +.+...+.|.- -.+.++| +.||.++|+.+..+|
T Consensus 51 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 51 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp CCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 456788999999999999999999999999999863 45566777764 5778875 579999999985443
No 239
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=93.37 E-value=0.2 Score=40.81 Aligned_cols=68 Identities=21% Similarity=0.351 Sum_probs=55.0
Q ss_pred ceeeeeeecCCceEEEeecCCchHHHHHHHHhhhh-CCCCCceEEE--ECCeeccc-CccccccCcCcCcEE
Q 012749 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLI--FAGKQLED-GRTLADYNIQKESTL 219 (457)
Q Consensus 152 ~~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~-gip~~~q~L~--~~g~~L~d-~~tL~~y~I~~~~~i 219 (457)
...|.|+.++|..+.-....++||.+|...|.... +.+...+.|+ |-.+.++| +.||.+.|+.+...+
T Consensus 52 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 52 TTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp CCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 45778888999999999999999999999998864 3555667776 45788865 689999999985554
No 240
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=93.29 E-value=0.41 Score=38.42 Aligned_cols=68 Identities=26% Similarity=0.397 Sum_probs=49.4
Q ss_pred EcCCCcEEEEEecCCCcHHHHHHHHhh--hhCCCCc------cceEee----ccEE-ccC---------C----Cccccc
Q 012749 6 KTLTGKTITLEVESSDTIDNVKAKIQD--KEGIPPD------QQRLIF----AGKQ-LED---------G----RTLADY 59 (457)
Q Consensus 6 ~~~~g~~~~~~v~~~dtv~~ik~ki~~--~~gip~~------~q~l~~----~g~~-L~~---------~----~tl~~y 59 (457)
...++..+++.|-..|||..+|+||-+ +.|.|.+ ...|-| .|+. |.| + +||++|
T Consensus 12 ~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY 91 (127)
T 3h6n_A 12 QGCGMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHY 91 (127)
T ss_dssp ETSCCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTT
T ss_pred cCCCCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEecccccc
Confidence 344567788999999999999999966 3566654 344544 2332 544 1 689999
Q ss_pred cccccccceEEEee
Q 012749 60 NIQKESTLHLVLRL 73 (457)
Q Consensus 60 ~I~~~sti~l~~~~ 73 (457)
+|.+++++-++.+.
T Consensus 92 ~V~dgatv~l~~~~ 105 (127)
T 3h6n_A 92 KIPEGASLAMSLID 105 (127)
T ss_dssp TCCTTCEEEEEECC
T ss_pred CCCCCCEEEEEEcc
Confidence 99999999887653
No 241
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=93.27 E-value=0.2 Score=36.54 Aligned_cols=66 Identities=14% Similarity=0.350 Sum_probs=49.7
Q ss_pred eeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
|+|.|+........++++++.||++|-. ..|+|++.-...-||+.+..+. +.+|+.|.+.--.-||
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~~V~G~ 66 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLRLIKGG 66 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTS------SSCCCCEEECSSCSCC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHH------CCCCCEEEEEEeeccc
Confidence 6777776644556789999999999765 4799999988888999887655 2348888876555555
No 242
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=92.82 E-value=0.22 Score=37.03 Aligned_cols=47 Identities=11% Similarity=0.158 Sum_probs=42.2
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcC
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 427 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g 427 (457)
.+|.|.|.+. -++.+.|+++.+..+|..+|+++.++|++...|.|..
T Consensus 4 ~~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 4 MAYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp SCEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred CcEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 4578888876 4899999999999999999999999999999999954
No 243
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=92.45 E-value=0.53 Score=38.35 Aligned_cols=63 Identities=32% Similarity=0.488 Sum_probs=47.1
Q ss_pred CEEEEEecCCchHHHHHHHHhhhc--CCCC------CCeEEEE----cCe-ecCCC-------------CcccccCCCCC
Q 012749 391 KTITLEVESSDTIDNVKAKIQDKE--GIPP------DQQRLIF----AGK-QLEDG-------------RTLADYNIQKE 444 (457)
Q Consensus 391 ~~~~l~v~~~~tV~~lK~~i~~~~--~ip~------~~q~l~~----~g~-~L~d~-------------~tL~~~~i~~~ 444 (457)
..+.++|-..+||.++|++|-+.. |.|- ++.-|-+ .|+ .|.|. .||+.|+|.+|
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg 120 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 120 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence 458889999999999999998775 4543 3445544 244 36653 48999999999
Q ss_pred CEEEEEEec
Q 012749 445 STLHLVLRL 453 (457)
Q Consensus 445 ~~i~l~~rl 453 (457)
+++.|+-|.
T Consensus 121 a~l~l~~~~ 129 (138)
T 2r2o_A 121 ATVALVPCL 129 (138)
T ss_dssp CEEEEEEC-
T ss_pred CEEEEEECC
Confidence 999998764
No 244
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=92.40 E-value=0.52 Score=34.60 Aligned_cols=61 Identities=18% Similarity=0.383 Sum_probs=53.9
Q ss_pred EEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 012749 393 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 453 (457)
Q Consensus 393 ~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl 453 (457)
..-.++-+.++..||..++.+.|++.+.-.+...+..|+++++|.+-+++-.-++.+++-.
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence 3445677889999999999999999999999999999999999999999988888887754
No 245
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.36 E-value=0.25 Score=36.39 Aligned_cols=64 Identities=13% Similarity=0.235 Sum_probs=54.8
Q ss_pred ceeeeeeecCCceEEEeecCCchHHHHHHHHhhhhCCCCCceEEEE---CCeecccCccccccCcCc
Q 012749 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQK 215 (457)
Q Consensus 152 ~~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~---~g~~L~d~~tL~~y~I~~ 215 (457)
.+.+.|.....+...+.|+|.-+.+++--.|.++..+.++...|.. .+..|+-+++|.||||++
T Consensus 10 TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 10 TVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp CEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred EEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 3455666666777889999999999999999999999999888874 367899999999999997
No 246
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=91.93 E-value=1.2 Score=34.10 Aligned_cols=73 Identities=14% Similarity=0.322 Sum_probs=50.9
Q ss_pred CceeeEEEeCC------C-CEEEEEecCCchHHHHHHHHhhhcC-C----------CCCCeEEEEcCeecCCCCcccccC
Q 012749 379 GGMQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-I----------PPDQQRLIFAGKQLEDGRTLADYN 440 (457)
Q Consensus 379 ~~~~i~v~~~~------g-~~~~l~v~~~~tV~~lK~~i~~~~~-i----------p~~~q~l~~~g~~L~d~~tL~~~~ 440 (457)
++|+|.|+... | ....++++...||.+|...+..... + ......+.-||+.... +.-
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~ 82 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEE 82 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCB
T ss_pred CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCC
Confidence 57888888642 3 4677888888999999999987641 1 1234567778887753 456
Q ss_pred CCCCCEEEEEEecCCC
Q 012749 441 IQKESTLHLVLRLRGG 456 (457)
Q Consensus 441 i~~~~~i~l~~rl~GG 456 (457)
+++|+.|.+.-...||
T Consensus 83 L~dGDeV~i~ppv~GG 98 (98)
T 1vjk_A 83 LKDGDVVGVFPPVSGG 98 (98)
T ss_dssp CCTTCEEEEESCC---
T ss_pred CCCCCEEEEECCCCCC
Confidence 7889999998887777
No 247
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=91.79 E-value=0.53 Score=37.37 Aligned_cols=64 Identities=31% Similarity=0.499 Sum_probs=47.0
Q ss_pred CCEEEEEecCCchHHHHHHHHhhhc--CCC------CCCeEEEE-cC---e-ecCCC-------------CcccccCCCC
Q 012749 390 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF-AG---K-QLEDG-------------RTLADYNIQK 443 (457)
Q Consensus 390 g~~~~l~v~~~~tV~~lK~~i~~~~--~ip------~~~q~l~~-~g---~-~L~d~-------------~tL~~~~i~~ 443 (457)
...+.++|-..+||.++|++|-+.. |.| ++...|-+ .| + .|.|. .||++|+|.+
T Consensus 26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 3457888889999999999997764 554 34555655 23 3 25542 5899999999
Q ss_pred CCEEEEEEec
Q 012749 444 ESTLHLVLRL 453 (457)
Q Consensus 444 ~~~i~l~~rl 453 (457)
|+++.+..|.
T Consensus 106 gatl~l~~~~ 115 (117)
T 4e74_A 106 GSVVALVSKQ 115 (117)
T ss_dssp TCEEEEEECC
T ss_pred CCEEEEEeCC
Confidence 9999998764
No 248
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=91.39 E-value=0.39 Score=36.15 Aligned_cols=68 Identities=13% Similarity=0.205 Sum_probs=47.9
Q ss_pred CceeeEEEeCCCCEEEEEecCC-chHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 379 GGMQIFVKTLTGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~-~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
..|+|.|. |+ .++++.. .||.+|...+ ++++....+..||..+..+ ...+.-+++||.|.+.-..-||
T Consensus 19 ~~M~I~vN---Ge--~~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~V~GG 87 (87)
T 1tyg_B 19 GRHMLQLN---GK--DVKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHFVGGG 87 (87)
T ss_dssp ---CEEET---TE--EECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEECCC-
T ss_pred cceEEEEC---CE--EEECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEcccccC
Confidence 45777654 53 4666777 8999999876 5777777888899988543 2344568889999998888777
No 249
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=91.15 E-value=0.49 Score=37.56 Aligned_cols=63 Identities=32% Similarity=0.513 Sum_probs=45.8
Q ss_pred CcEEEEEecCCCcHHHHHHHHhh--hhCCCCcc------ceEee-cc---E-EccC---------C----Cccccccccc
Q 012749 10 GKTITLEVESSDTIDNVKAKIQD--KEGIPPDQ------QRLIF-AG---K-QLED---------G----RTLADYNIQK 63 (457)
Q Consensus 10 g~~~~~~v~~~dtv~~ik~ki~~--~~gip~~~------q~l~~-~g---~-~L~~---------~----~tl~~y~I~~ 63 (457)
+..+++.|-..|||..+|+||-+ +.|.|.++ ..|-| .| + .|.| + +||++|+|.+
T Consensus 26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 45688888899999999999965 46777653 34444 22 3 2444 1 5899999999
Q ss_pred cccceEEEe
Q 012749 64 ESTLHLVLR 72 (457)
Q Consensus 64 ~sti~l~~~ 72 (457)
++++-++.+
T Consensus 106 gatl~l~~~ 114 (117)
T 4e74_A 106 GSVVALVSK 114 (117)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEeC
Confidence 999988765
No 250
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=90.19 E-value=1.2 Score=32.20 Aligned_cols=58 Identities=14% Similarity=0.370 Sum_probs=42.1
Q ss_pred EEEecCCchHHHHHHHHhhhcCCCC--CCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 394 TLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~~ip~--~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
.+++ ...||.+|...+....++.. ....+.-||+.+.+ .+.-+++|+.|.+.-...||
T Consensus 15 ~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~PpvsGG 74 (74)
T 3rpf_C 15 NFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVCGG 74 (74)
T ss_dssp CEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBCCC
T ss_pred EEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCCCC
Confidence 3566 66899999999987543322 44566778887543 24457889999999998888
No 251
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=89.29 E-value=2.8 Score=33.43 Aligned_cols=61 Identities=33% Similarity=0.502 Sum_probs=42.8
Q ss_pred CEEEEEecCCchHHHHHHHHhhh----cCCCC----CCeEEEE--c--CeecCC----------C----CcccccCCCCC
Q 012749 391 KTITLEVESSDTIDNVKAKIQDK----EGIPP----DQQRLIF--A--GKQLED----------G----RTLADYNIQKE 444 (457)
Q Consensus 391 ~~~~l~v~~~~tV~~lK~~i~~~----~~ip~----~~q~l~~--~--g~~L~d----------~----~tL~~~~i~~~ 444 (457)
..+.++|-..+||.++|++|-+. .|.|- +.+.|-+ + |..|.| . .||+.|+|.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 46788888999999999998654 26654 3444544 1 223332 1 47899999999
Q ss_pred CEEEEEE
Q 012749 445 STLHLVL 451 (457)
Q Consensus 445 ~~i~l~~ 451 (457)
+++.+..
T Consensus 119 atlal~k 125 (126)
T 3kuz_A 119 STIKVFK 125 (126)
T ss_dssp CEEEEEE
T ss_pred CEEEEee
Confidence 9998764
No 252
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=88.40 E-value=0.77 Score=32.40 Aligned_cols=58 Identities=12% Similarity=0.212 Sum_probs=43.2
Q ss_pred EEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
.++++...||.+|...+ ++++....+..||..+..+ ...+.-+++|+.|.+.-..-||
T Consensus 9 ~~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~V~GG 66 (66)
T 1f0z_A 9 AMQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_dssp EECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEESCCCC
T ss_pred EEEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEeecccC
Confidence 35667889999999887 5677777888899887532 1223457789999998877776
No 253
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=87.74 E-value=1.5 Score=31.71 Aligned_cols=60 Identities=12% Similarity=0.353 Sum_probs=43.3
Q ss_pred eeeEEEecCCcEEEEEeecCccHHHHHHHhhcccCCCCCCceEEecCeeccCCCcccccccccCceEEEE
Q 012749 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374 (457)
Q Consensus 305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~L~~~~i~~~~~l~l~ 374 (457)
|+|.|+-.......++++++.|+.|| -+.+|+|+..--...||..++.+.. + .|+++.++
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dL----L~~Lgl~~~~VvV~vNG~~v~~d~~-----l-~GD~VeIv 60 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADL----VRAVDLSPHEVTVLVDGRPVPEDQS-----V-EVDRVKVL 60 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHH----HHTTCCCSSCCCEECCCCCCCTTSS-----S-CCCCEEEC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHH----HHHcCCCcceEEEEECCEECCHHHC-----C-CCCEEEEE
Confidence 46677655445556899999999999 6778999987656678887766662 2 36777665
No 254
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=86.83 E-value=1.3 Score=32.76 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=37.4
Q ss_pred eEEEecCCcEEEEEeecCccHHHHHHHhhcccCCCCCCceEEecC
Q 012749 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 351 (457)
Q Consensus 307 i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g 351 (457)
+.||..=..++.|.++++.+..+|..+|.+++++|++.-.|.|..
T Consensus 6 ~~VKV~~~~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 6 YTLKVHYKYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp EEEEEESSSEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred EEEEEEEEEEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 334444447899999999999999999999999999888888753
No 255
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=86.55 E-value=2.5 Score=38.02 Aligned_cols=62 Identities=19% Similarity=0.284 Sum_probs=50.4
Q ss_pred EEEeecCCchHHHHHHHHhhhhCCCCC-ceEEEE-C----Ceeccc-CccccccCcCcCcEEEEEEEec
Q 012749 165 ITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-A----GKQLED-GRTLADYNIQKESTLHLVLRLR 226 (457)
Q Consensus 165 ~~~~v~~~~tV~~lK~~I~~~~gip~~-~q~L~~-~----g~~L~d-~~tL~~y~I~~~~~i~l~~~~~ 226 (457)
++..++..+||.+|++.+.+.+++|.+ ..||-. . ...|.| +.||.++++..+..|.+-.+..
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~ 222 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNE 222 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCT
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecC
Confidence 567789999999999999999999997 588753 3 245665 5899999999999997766643
No 256
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=86.32 E-value=3.1 Score=31.00 Aligned_cols=61 Identities=15% Similarity=0.245 Sum_probs=46.4
Q ss_pred CEEEEEecCCchHHHHHHHHhhhcC-C-----C-----CCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 391 KTITLEVESSDTIDNVKAKIQDKEG-I-----P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 391 ~~~~l~v~~~~tV~~lK~~i~~~~~-i-----p-----~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
....++++...||.+|...+..... + . .....+.-||+.... +.-+++|+.|.+.-...||
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~GG 89 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVSGG 89 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCSCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCCCC
Confidence 4677888888999999999988752 1 0 012567778888865 4457789999999988888
No 257
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=86.23 E-value=1.6 Score=38.88 Aligned_cols=62 Identities=23% Similarity=0.356 Sum_probs=49.9
Q ss_pred eEEEeecCCchHHHHHHHHhhhhCCCCC-ceEEE--EC---Ceeccc-CccccccCcCcCcEEEEEEEe
Q 012749 164 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI--FA---GKQLED-GRTLADYNIQKESTLHLVLRL 225 (457)
Q Consensus 164 ~~~~~v~~~~tV~~lK~~I~~~~gip~~-~q~L~--~~---g~~L~d-~~tL~~y~I~~~~~i~l~~~~ 225 (457)
..++.++..+||.+|++.+.+.+++|.+ ..||- +. ...|++ +.||.++++.++..|.+-++.
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKN 209 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence 3567789999999999999999999987 57774 32 245655 579999999999999776664
No 258
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=85.63 E-value=1.5 Score=35.02 Aligned_cols=60 Identities=33% Similarity=0.486 Sum_probs=41.6
Q ss_pred cEEEEEecCCCcHHHHHHHHhhh----hCCCCcc----ceEee----ccEEcc----------CC----Ccccccccccc
Q 012749 11 KTITLEVESSDTIDNVKAKIQDK----EGIPPDQ----QRLIF----AGKQLE----------DG----RTLADYNIQKE 64 (457)
Q Consensus 11 ~~~~~~v~~~dtv~~ik~ki~~~----~gip~~~----q~l~~----~g~~L~----------~~----~tl~~y~I~~~ 64 (457)
..+++.|-..|||..+|+||-+. .|.|.++ ..|-| .|..|. ++ +||++|+|.++
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 56888999999999999999543 5887653 22322 122222 21 57889999999
Q ss_pred ccceEE
Q 012749 65 STLHLV 70 (457)
Q Consensus 65 sti~l~ 70 (457)
+++-++
T Consensus 119 atlal~ 124 (126)
T 3kuz_A 119 STIKVF 124 (126)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 998764
No 259
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=84.41 E-value=1.2 Score=32.18 Aligned_cols=61 Identities=11% Similarity=0.225 Sum_probs=45.7
Q ss_pred CCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012749 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 389 ~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 457 (457)
+|+. .++ ...||.+|-.. .++++...-+..||..+..+ ..++.-+++||.|.+....-||.
T Consensus 6 NG~~--~e~-~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~veIv~~VgGG~ 66 (73)
T 2kl0_A 6 NGEQ--REV-QSASVAALMTE----LDCTGGHFAVALNYDVVPRG-KWDETPVTAGDEIEILTPRQGGL 66 (73)
T ss_dssp TTEE--ECC-CCSBHHHHHHH----TTCCSSSCEEEESSSEECHH-HHTTCBCCTTCEEEEECCCCCCC
T ss_pred CCEE--EEc-CCCcHHHHHHH----cCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEccccCCc
Confidence 3543 445 67899998775 57888888888999988532 34455677899999998888884
No 260
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=83.83 E-value=2.6 Score=30.73 Aligned_cols=59 Identities=7% Similarity=0.153 Sum_probs=43.0
Q ss_pred EEEEEecCCchHHHHHHHHhhhcC-----CCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 392 TITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~~-----ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
...++ ....||.+|...+..... ++.....+..||+.... +.-+++|+.|.+.-...||
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv~GG 81 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCCCCC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCCCCC
Confidence 45555 567899999999986642 23344567889988753 4457789999998888887
No 261
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=83.73 E-value=4.8 Score=37.37 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=55.9
Q ss_pred ceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCC-eEEEE---cCe--ecCCCCcccccCCCCCCEEEEEEec
Q 012749 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF---AGK--QLEDGRTLADYNIQKESTLHLVLRL 453 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~-q~l~~---~g~--~L~d~~tL~~~~i~~~~~i~l~~rl 453 (457)
++.+.|..++| +..+.+++++|+.+|-..|++..|+.... +-|.+ +|. -|+.++++.+.++..+....+.+|.
T Consensus 1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr~ 79 (294)
T 1ef1_A 1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFRA 79 (294)
T ss_dssp CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEEE
T ss_pred CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEEE
Confidence 36678888888 68899999999999999999999997544 45555 233 3677888988877666666666654
No 262
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=83.20 E-value=4.4 Score=38.11 Aligned_cols=75 Identities=11% Similarity=0.122 Sum_probs=58.0
Q ss_pred cCceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCC-CeEEEE--cCe--ecCCCCcccccCCCCCCEEEEEEe
Q 012749 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF--AGK--QLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~-~q~l~~--~g~--~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
+.++.+.|..++| ++.+.+++++|+.+|-..|++..|+... .+-|.| +|. -|+.++++.+.++..+....+.+|
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 4567888888988 7889999999999999999999999753 345655 333 377888999988776666666665
Q ss_pred c
Q 012749 453 L 453 (457)
Q Consensus 453 l 453 (457)
.
T Consensus 99 ~ 99 (314)
T 1h4r_A 99 A 99 (314)
T ss_dssp E
T ss_pred E
Confidence 3
No 263
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=82.90 E-value=1.1 Score=36.43 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=31.2
Q ss_pred EEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEc
Q 012749 393 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 426 (457)
Q Consensus 393 ~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~ 426 (457)
.++.|..++|+.+||..|++..|+|++.|||-.+
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 5679999999999999999999999999998764
No 264
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=82.80 E-value=6.5 Score=29.48 Aligned_cols=65 Identities=14% Similarity=0.203 Sum_probs=44.1
Q ss_pred CCEEEEEecCCchHHHHHHHHhhhcCC------C-------CCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 390 GKTITLEVESSDTIDNVKAKIQDKEGI------P-------PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 390 g~~~~l~v~~~~tV~~lK~~i~~~~~i------p-------~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
|....+++ ...||.+|...+...+.- . .....+.-||+...+..-+ +.-+++|+.|.+.-...||
T Consensus 16 g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L~~gDeV~i~Ppv~GG 93 (93)
T 3dwg_C 16 GGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAIADGDSVTILPAVAGG 93 (93)
T ss_dssp TTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBCCTTCEEEEEECCTTC
T ss_pred CCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCCCCCCEEEEECCCCCC
Confidence 43334664 567999999999987520 0 1135667788877642222 3457889999999999888
No 265
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=81.79 E-value=1.1 Score=32.97 Aligned_cols=62 Identities=15% Similarity=0.305 Sum_probs=46.3
Q ss_pred CCCEEEEEec--CCchHHHHHHHHhhhcCCC-CCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012749 389 TGKTITLEVE--SSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 389 ~g~~~~l~v~--~~~tV~~lK~~i~~~~~ip-~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 457 (457)
+|+ ..+++ ...||.+|-..+ +++ +...-+..||..+..+ ..++.-+++||.|.+....-||.
T Consensus 6 NGe--~~e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~~VgGG~ 70 (78)
T 2k5p_A 6 NGK--PSTVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLYFMGGGK 70 (78)
T ss_dssp TTE--EEECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECCCCCCSC
T ss_pred CCE--EEEcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEeeecCCC
Confidence 354 34556 778999998764 677 7777888999988653 34556677899999988888874
No 266
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=80.88 E-value=2.7 Score=30.30 Aligned_cols=59 Identities=14% Similarity=0.218 Sum_probs=43.4
Q ss_pred EEEEEecCCchHHHHHHHHhhhcCCCCCCe--EEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 392 TITLEVESSDTIDNVKAKIQDKEGIPPDQQ--RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q--~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
...++++...||.+|...+..... ..... .+..||+....+ .-+++|+.|.+.-...||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ppv~GG 77 (77)
T 2q5w_D 17 QEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALIPPVSGG 77 (77)
T ss_dssp EEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEECSCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEECCCCCC
Confidence 456777788899999999887641 01223 677899888654 457789999998877777
No 267
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=80.13 E-value=12 Score=26.37 Aligned_cols=63 Identities=22% Similarity=0.283 Sum_probs=43.9
Q ss_pred ceeeeeeecCCceEEEeecCCchHHHHHHHHhhhhCCCCCceEEEECCeecccCccccccCcCcCcEEEEEEE
Q 012749 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (457)
Q Consensus 152 ~~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~I~~~~~i~l~~~ 224 (457)
.|.|.|....+ ...+++....||.+|.+.+ +++++......+|+....+. -+++|+.|.++..
T Consensus 4 ~m~i~vNg~~~-~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~ 66 (70)
T 1ryj_A 4 GMKFTVITDDG-KKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRV 66 (70)
T ss_dssp CEEEEEEETTE-EEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEEC
T ss_pred eEEEEEeCccC-ceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEec
Confidence 46666653322 2356777778999998876 56666667788888886554 6888999877653
No 268
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=79.53 E-value=1.8 Score=35.12 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=32.7
Q ss_pred cEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeec
Q 012749 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (457)
Q Consensus 11 ~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~ 46 (457)
...++.|....|+.+++..|.+..|+|+++|+|+.-
T Consensus 56 ~~~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 56 KYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp SCEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred CcceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 455789999999999999999999999999999874
No 269
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=79.26 E-value=12 Score=28.46 Aligned_cols=71 Identities=24% Similarity=0.263 Sum_probs=56.0
Q ss_pred eEEEEcCCC---cEEEEEecCCCcHHHHHHHHhhhhCCCCcc--ceEeec---cEEccCCCccccccccccccceEEEe
Q 012749 2 QIFVKTLTG---KTITLEVESSDTIDNVKAKIQDKEGIPPDQ--QRLIFA---GKQLEDGRTLADYNIQKESTLHLVLR 72 (457)
Q Consensus 2 ~i~~~~~~g---~~~~~~v~~~dtv~~ik~ki~~~~gip~~~--q~l~~~---g~~L~~~~tl~~y~I~~~sti~l~~~ 72 (457)
.|+|..++. ...+++|...--|..+..|+-++.+++.+. --|.+- -..|.-..||..|+|+..+.+++...
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp~ 99 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTPQ 99 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEEC
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccCC
Confidence 589999774 678899999999999999999999887654 233332 23467778999999999999988653
No 270
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=79.00 E-value=4.8 Score=27.95 Aligned_cols=60 Identities=13% Similarity=0.312 Sum_probs=43.1
Q ss_pred CCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 389 ~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
+|+.+ ++ ...||.+|...+ ++++....+..||+.+..+ .-.+.-+++|+.|.+.-..-||
T Consensus 5 Ng~~~--~~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~V~GG 64 (64)
T 2cu3_A 5 NGEPR--PL-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVALMQGG 64 (64)
T ss_dssp TTEEE--CC-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEECCCC-
T ss_pred CCEEE--Ec-CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEeecccC
Confidence 46444 55 678999999887 4667777788899887643 2234457889999998887777
No 271
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=78.02 E-value=9.6 Score=38.86 Aligned_cols=64 Identities=28% Similarity=0.485 Sum_probs=46.7
Q ss_pred CCEEEEEecCCchHHHHHHHHhhhc--CCC------CCCeEEEE----cCe-ecCCC-------------CcccccCCCC
Q 012749 390 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF----AGK-QLEDG-------------RTLADYNIQK 443 (457)
Q Consensus 390 g~~~~l~v~~~~tV~~lK~~i~~~~--~ip------~~~q~l~~----~g~-~L~d~-------------~tL~~~~i~~ 443 (457)
...+.++|-..+||.++|++|-+.. |.| +++..|-+ .|+ .|.|. .||++|+|.+
T Consensus 246 ~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 246 SAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp -CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 3568888999999999999998764 443 45556654 233 35542 5899999999
Q ss_pred CCEEEEEEec
Q 012749 444 ESTLHLVLRL 453 (457)
Q Consensus 444 ~~~i~l~~rl 453 (457)
|+++.++-|.
T Consensus 326 ga~v~L~p~~ 335 (627)
T 3ig3_A 326 GSLVALVPKQ 335 (627)
T ss_dssp TCEEEEEEC-
T ss_pred CceEEEEecc
Confidence 9999987664
No 272
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=77.75 E-value=5.2 Score=40.83 Aligned_cols=63 Identities=30% Similarity=0.502 Sum_probs=44.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHhhh--hCCCC------CCcEEEe-cC---c-ccCCC-------------CcccccccccC
Q 012749 87 KTITLEVESSDTIDNVKAKIQDK--EGIPP------DQQRLIF-AG---K-QLEDG-------------RTLADYNIQKE 140 (457)
Q Consensus 87 ~~~~l~v~~~~tV~~lK~~i~~~--~gip~------~~q~L~~-~g---~-~L~d~-------------~tl~~y~i~~~ 140 (457)
..+.+.|-..|||.++|+||-+. .|.|- ++..|-+ .| + .|.|. .||++|+|.+|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 45888899999999999999864 35553 3444554 23 2 24441 48999999999
Q ss_pred CcceEEEEe
Q 012749 141 STLHLVLRL 149 (457)
Q Consensus 141 s~i~l~~~~ 149 (457)
+++-++.+.
T Consensus 354 a~v~L~p~~ 362 (644)
T 3hm6_X 354 ATVALVPCL 362 (644)
T ss_dssp CEEEEEEC-
T ss_pred cEEEEEecc
Confidence 999876543
No 273
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=77.28 E-value=4.4 Score=41.38 Aligned_cols=64 Identities=33% Similarity=0.513 Sum_probs=46.1
Q ss_pred cEEEEEecCCCcHHHHHHHHhh--hhCCCCccc------eEee----ccE-EccCC-------------Ccccccccccc
Q 012749 11 KTITLEVESSDTIDNVKAKIQD--KEGIPPDQQ------RLIF----AGK-QLEDG-------------RTLADYNIQKE 64 (457)
Q Consensus 11 ~~~~~~v~~~dtv~~ik~ki~~--~~gip~~~q------~l~~----~g~-~L~~~-------------~tl~~y~I~~~ 64 (457)
..+++.|-..|||..+|+||-+ +.|.|.+++ .|-| .|+ .|.|. +||++|+|.++
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 4688889999999999999965 467776643 3434 233 24441 58999999999
Q ss_pred ccceEEEeec
Q 012749 65 STLHLVLRLR 74 (457)
Q Consensus 65 sti~l~~~~~ 74 (457)
+++-++.+..
T Consensus 354 a~v~L~p~~~ 363 (644)
T 3hm6_X 354 ATVALVPCLT 363 (644)
T ss_dssp CEEEEEEC--
T ss_pred cEEEEEeccc
Confidence 9998877643
No 274
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=77.22 E-value=10 Score=28.42 Aligned_cols=47 Identities=11% Similarity=0.176 Sum_probs=38.0
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCC-eEEEEc
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA 426 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~-q~l~~~ 426 (457)
+.|+|.+.. +|..+.+.++++.+..+|..++.+..+++.++ +.+.|-
T Consensus 5 ~~vkvK~~~-~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~ 52 (89)
T 1vd2_A 5 SQVRVKAYY-RGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWI 52 (89)
T ss_dssp SCEEEEEES-SSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEEC
T ss_pred CeEEEEEEe-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEE
Confidence 345666664 47789999999999999999999999998666 667674
No 275
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=76.89 E-value=8.5 Score=39.59 Aligned_cols=74 Identities=15% Similarity=0.265 Sum_probs=57.4
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCC-CeEEEEc---C--eecCCCCcccccCCCCCCEEEEEEe
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~-~q~l~~~---g--~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
.++.+.|..++| ++.+.|++++|+.+|-..|+...|+... .+-|.|. | .-|+.+.++.+.++..+....+.+|
T Consensus 3 k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 3 KSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred ceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 457788888888 6889999999999999999999999643 4566652 2 2467778898887777777666666
Q ss_pred c
Q 012749 453 L 453 (457)
Q Consensus 453 l 453 (457)
.
T Consensus 82 v 82 (575)
T 2i1j_A 82 A 82 (575)
T ss_dssp E
T ss_pred E
Confidence 4
No 276
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=75.87 E-value=13 Score=28.10 Aligned_cols=70 Identities=11% Similarity=0.268 Sum_probs=46.2
Q ss_pred cCceEEEEEccC------C-cEEEEEEcCCCCHHHHHHHHhhhhC-C----------CCCCcEEEecCcccCCCCccccc
Q 012749 74 RGGMQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-I----------PPDQQRLIFAGKQLEDGRTLADY 135 (457)
Q Consensus 74 ~~~~~i~vk~~~------g-~~~~l~v~~~~tV~~lK~~i~~~~g-i----------p~~~q~L~~~g~~L~d~~tl~~y 135 (457)
.++|.|.|+... | ....+++....||.+|.+.+..... + ....-.+..||+.... ++
T Consensus 7 ~~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~ 81 (98)
T 1vjk_A 7 HGSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DE 81 (98)
T ss_dssp --CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TC
T ss_pred cCcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CC
Confidence 357888888543 3 4677888888999999999876531 1 1233456677776653 56
Q ss_pred ccccCCcceEEEE
Q 012749 136 NIQKESTLHLVLR 148 (457)
Q Consensus 136 ~i~~~s~i~l~~~ 148 (457)
-+++|+.|.+...
T Consensus 82 ~L~dGDeV~i~pp 94 (98)
T 1vjk_A 82 ELKDGDVVGVFPP 94 (98)
T ss_dssp BCCTTCEEEEESC
T ss_pred CCCCCCEEEEECC
Confidence 6778888776543
No 277
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=75.25 E-value=15 Score=27.89 Aligned_cols=71 Identities=25% Similarity=0.322 Sum_probs=52.6
Q ss_pred eeeEEEeCCC---CEEEEEecCCchHHHHHHHHhhhcCCCCC--CeEEEEcCe---ecCCCCcccccCCCCCCEEEEEE
Q 012749 381 MQIFVKTLTG---KTITLEVESSDTIDNVKAKIQDKEGIPPD--QQRLIFAGK---QLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 381 ~~i~v~~~~g---~~~~l~v~~~~tV~~lK~~i~~~~~ip~~--~q~l~~~g~---~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
..|+|..++. ...++.|..+.-|..+..++-+..+++.+ .--|-..-+ .+.-..||..|||+.++.++.+-
T Consensus 20 L~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp 98 (102)
T 2kmc_A 20 LVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred EEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence 4577777543 56889999999999999999988877644 223333222 35677899999999999887653
No 278
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=75.21 E-value=1.1 Score=32.80 Aligned_cols=54 Identities=11% Similarity=0.260 Sum_probs=42.0
Q ss_pred EEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
.++++...||.+|...+ ++++....+..||+....+ .-+++||.|.+.-..-||
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ppv~GG 77 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIPVVSGG 77 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSCCCCCC
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEcccccC
Confidence 45667788999998876 4677777788899988764 457789999888777776
No 279
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=75.08 E-value=26 Score=27.45 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=46.5
Q ss_pred ceeeEEEeC------CC--CEEEEEecC---CchHHHHHHHHhhhc-CCC---------CC-CeEEEEcCeecCCCCcc-
Q 012749 380 GMQIFVKTL------TG--KTITLEVES---SDTIDNVKAKIQDKE-GIP---------PD-QQRLIFAGKQLEDGRTL- 436 (457)
Q Consensus 380 ~~~i~v~~~------~g--~~~~l~v~~---~~tV~~lK~~i~~~~-~ip---------~~-~q~l~~~g~~L~d~~tL- 436 (457)
+|+|.|+.. .| +.+.++++. ..||.+|...+++.+ +.. .. ...++-||+..+ .|
T Consensus 11 ~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~---~l~ 87 (114)
T 1wgk_A 11 PLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWE---LLG 87 (114)
T ss_dssp CEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHH---HHC
T ss_pred CcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeee---ccC
Confidence 467777653 23 366788884 369999999999886 111 01 122233443211 11
Q ss_pred -cccCCCCCCEEEEEEecCCCC
Q 012749 437 -ADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 437 -~~~~i~~~~~i~l~~rl~GG~ 457 (457)
.++-+++||.|.+.-.+-||+
T Consensus 88 gldt~L~dGDeV~iip~vaGG~ 109 (114)
T 1wgk_A 88 ELDYQLQDQDSILFISTLHGGS 109 (114)
T ss_dssp TTTCBCCSSEEEEEEECSCCCC
T ss_pred CcCcCCCCCCEEEEeCCCCCCC
Confidence 356788999999988888884
No 280
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=73.96 E-value=11 Score=27.79 Aligned_cols=62 Identities=13% Similarity=0.254 Sum_probs=42.6
Q ss_pred EEEecCCchHHHHHHHHhhhcC------C-----CCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 394 TLEVESSDTIDNVKAKIQDKEG------I-----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~~------i-----p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
.++++...||.+|...+..... + ......+..||+...... -.+.-+++|+.|.+.-...||
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~ppv~GG 90 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLFPPVAGG 90 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEECCTTCC
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEEEEeCCCCCC
Confidence 3456667899999999987741 1 113456778888775321 123457889999998888887
No 281
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=73.83 E-value=14 Score=34.18 Aligned_cols=70 Identities=16% Similarity=0.251 Sum_probs=51.1
Q ss_pred eeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCC-eEEEe---CCc--ccCCCccccccccCCCCeEEEEE
Q 012749 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF---AGK--QLEDGRTLADYNIQKESTLHLVL 299 (457)
Q Consensus 229 ~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~-q~L~~---~g~--~L~d~~tl~~~~i~~~~tl~l~~ 299 (457)
+.+.|..++| ++++.++++.|+++|-+.|+++.|+.... .-|.+ +|. -|+..+++.+.+++.+....+..
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~f 77 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKF 77 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEE
Confidence 4566777888 78899999999999999999999996654 34544 232 26778888887666555554433
No 282
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=72.95 E-value=16 Score=34.12 Aligned_cols=72 Identities=11% Similarity=0.152 Sum_probs=53.3
Q ss_pred CCeeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCe-EEEe--CCcc--cCCCccccccccCCCCeEEEEE
Q 012749 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIF--AGKQ--LEDGRTLADYNIQKESTLHLVL 299 (457)
Q Consensus 227 ~~~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q-~L~~--~g~~--L~d~~tl~~~~i~~~~tl~l~~ 299 (457)
..+.+.|..++| ++.+.++++.|+.+|-+.|+++.||...++ -|.+ .|.. |+.++++.+..+..+....+..
T Consensus 21 ~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~f 97 (314)
T 1h4r_A 21 KTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHF 97 (314)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEE
T ss_pred CeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEE
Confidence 345677888898 899999999999999999999999976543 3544 3322 7778888887766555544433
No 283
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=72.01 E-value=19 Score=26.86 Aligned_cols=48 Identities=10% Similarity=0.192 Sum_probs=37.3
Q ss_pred ceEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCC-cEEEecCc
Q 012749 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGK 124 (457)
Q Consensus 76 ~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~-q~L~~~g~ 124 (457)
.|.|.+. .+|..+.+.++++.+..+|.+++++..+++..+ -.+.|...
T Consensus 6 ~vkvK~~-~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 6 QVRVKAY-YRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE 54 (89)
T ss_dssp CEEEEEE-SSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred eEEEEEE-eCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence 3455553 567899999999999999999999999987544 56666654
No 284
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=70.83 E-value=17 Score=28.54 Aligned_cols=64 Identities=13% Similarity=0.105 Sum_probs=51.2
Q ss_pred EEEEEecCCchHHHHHHHHhhh--------cCCCCCCeEEEEcCeecC--CCCcccccCCCCCCEEEEEEecCC
Q 012749 392 TITLEVESSDTIDNVKAKIQDK--------EGIPPDQQRLIFAGKQLE--DGRTLADYNIQKESTLHLVLRLRG 455 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~--------~~ip~~~q~l~~~g~~L~--d~~tL~~~~i~~~~~i~l~~rl~G 455 (457)
.+.+-|+|+++.++|-+.+-.- ..|+.+.-.|..+|++.. .+++|++-|+..-|.|....+-+-
T Consensus 39 p~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~TPgL~ 112 (119)
T 3u52_E 39 PFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVTTPGLK 112 (119)
T ss_dssp CEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEECTTCC
T ss_pred ceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEeCCCcC
Confidence 5889999999999998776542 356666678999999986 457999999999999887765433
No 285
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=70.07 E-value=11 Score=27.88 Aligned_cols=43 Identities=14% Similarity=0.139 Sum_probs=34.1
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEE
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 424 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~ 424 (457)
..|+|.+-.. +-.+.+.|+++.+..+|+.+|..+..+. .+.++
T Consensus 11 ~~~KVK~yy~-DDIiAIrvP~di~~~~L~dKi~~RLk~~--~~~l~ 53 (85)
T 1ip9_A 11 KTTKIKFYYK-DDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQ 53 (85)
T ss_dssp CCEEEEECBT-TCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEE
T ss_pred CceEEEEEec-CcEEEEECCCCCCHHHHHHHHHHHhccc--ceEEE
Confidence 4566766655 4589999999999999999999999883 44443
No 286
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=69.89 E-value=13 Score=37.81 Aligned_cols=65 Identities=29% Similarity=0.468 Sum_probs=45.9
Q ss_pred CcEEEEEecCCCcHHHHHHHHhhh--hCCCCcc------ceEee----ccE-EccC---------C----Cccccccccc
Q 012749 10 GKTITLEVESSDTIDNVKAKIQDK--EGIPPDQ------QRLIF----AGK-QLED---------G----RTLADYNIQK 63 (457)
Q Consensus 10 g~~~~~~v~~~dtv~~ik~ki~~~--~gip~~~------q~l~~----~g~-~L~~---------~----~tl~~y~I~~ 63 (457)
...+++.|-..|||..+|+||-+. .|.|.++ ..|-| .|+ .|.| + .||++|+|.+
T Consensus 246 ~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 246 SAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp -CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 367888899999999999999663 5666543 34444 233 2433 1 5899999999
Q ss_pred cccceEEEeec
Q 012749 64 ESTLHLVLRLR 74 (457)
Q Consensus 64 ~sti~l~~~~~ 74 (457)
++++-++.+..
T Consensus 326 ga~v~L~p~~~ 336 (627)
T 3ig3_A 326 GSLVALVPKQV 336 (627)
T ss_dssp TCEEEEEEC--
T ss_pred CceEEEEeccc
Confidence 99999987653
No 287
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=69.87 E-value=13 Score=34.58 Aligned_cols=74 Identities=8% Similarity=-0.009 Sum_probs=53.1
Q ss_pred cCceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCC-eEEEEc---C--eecCCCCcccccCCCCCCEEEEEE
Q 012749 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA---G--KQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~-q~l~~~---g--~~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
...+.+.|..++|....+.|++.+|+.||-..|++..|+.... +-|.+. | .-|+.++++.+........+++..
T Consensus 15 ~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~frv 94 (296)
T 3qij_A 15 YFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFNV 94 (296)
T ss_dssp --CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEEE
T ss_pred CceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEEE
Confidence 4568889999999999999999999999999999999987544 556553 2 246777777776543344444443
No 288
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=69.05 E-value=35 Score=25.77 Aligned_cols=65 Identities=15% Similarity=0.237 Sum_probs=40.4
Q ss_pred CEEEEEec--CCchHHHHHHHHhhhcC-CCCC------------CeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCC
Q 012749 391 KTITLEVE--SSDTIDNVKAKIQDKEG-IPPD------------QQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 455 (457)
Q Consensus 391 ~~~~l~v~--~~~tV~~lK~~i~~~~~-ip~~------------~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~G 455 (457)
+...++++ ...||.+|...+.++.. ..++ ...+.-||+..+-.. =.++-+++|+.|.+.-..-|
T Consensus 20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~-~~d~~L~dgDeVa~~Ppv~G 98 (99)
T 2qjl_A 20 RVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEG-EKDYILEDGDIISFTSTLHG 98 (99)
T ss_dssp CEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGT-GGGCBCCTTCEEEEEECTTC
T ss_pred cEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccC-CCCcCcCCCCEEEEECCCCC
Confidence 35666776 67899999999998763 1110 112334554321000 02456888999999888888
Q ss_pred C
Q 012749 456 G 456 (457)
Q Consensus 456 G 456 (457)
|
T Consensus 99 G 99 (99)
T 2qjl_A 99 G 99 (99)
T ss_dssp C
T ss_pred C
Confidence 7
No 289
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=67.98 E-value=17 Score=37.26 Aligned_cols=71 Identities=14% Similarity=0.266 Sum_probs=52.0
Q ss_pred CeeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCC-eEEEeC---Cc--ccCCCccccccccCCCCeEEEEE
Q 012749 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA---GK--QLEDGRTLADYNIQKESTLHLVL 299 (457)
Q Consensus 228 ~~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~-q~L~~~---g~--~L~d~~tl~~~~i~~~~tl~l~~ 299 (457)
.+.+.|..++| ++.+.++++.|+.+|-..|+.+.||.... .-|.+. |. -|+.++++.+.++..+....|..
T Consensus 4 ~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~F 80 (575)
T 2i1j_A 4 SMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKF 80 (575)
T ss_dssp EEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEE
T ss_pred eEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEE
Confidence 35667778888 78899999999999999999999996554 445552 21 26667788887766666554443
No 290
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=67.10 E-value=13 Score=28.44 Aligned_cols=72 Identities=17% Similarity=0.173 Sum_probs=51.2
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEE-------cCeecCCCCc----ccccCCCCCCEE
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRT----LADYNIQKESTL 447 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~-------~g~~L~d~~t----L~~~~i~~~~~i 447 (457)
.+.-|.|-..+|...++.|++++|+.++-+.++.+.+...+.-+-++ --+.++|... ++...+..+..+
T Consensus 8 ~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~ 87 (100)
T 1wgr_A 8 RPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRF 87 (100)
T ss_dssp SCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEE
T ss_pred CCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEE
Confidence 34456666789999999999999999999999999988765554333 2356777764 444555555555
Q ss_pred EEE
Q 012749 448 HLV 450 (457)
Q Consensus 448 ~l~ 450 (457)
...
T Consensus 88 ~F~ 90 (100)
T 1wgr_A 88 VFR 90 (100)
T ss_dssp EEC
T ss_pred EEe
Confidence 443
No 291
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=65.95 E-value=12 Score=28.59 Aligned_cols=59 Identities=12% Similarity=0.287 Sum_probs=41.3
Q ss_pred EEEEEecCCchHHHHHHHHhhhcCCCCC-----------CeEEEEcC-eecCC------CCcccccCCCCCCEEEEE
Q 012749 392 TITLEVESSDTIDNVKAKIQDKEGIPPD-----------QQRLIFAG-KQLED------GRTLADYNIQKESTLHLV 450 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~~ip~~-----------~q~l~~~g-~~L~d------~~tL~~~~i~~~~~i~l~ 450 (457)
...++|+++.|+.+|-..+++.-..... .-.|+..+ ..|+. +++|.+.|+.+|+.|+++
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 4568999999999999999995433222 23333332 23332 367999999999999886
No 292
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=63.83 E-value=5.8 Score=41.65 Aligned_cols=51 Identities=31% Similarity=0.602 Sum_probs=42.4
Q ss_pred CCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEc-CeecCCCCccccc
Q 012749 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADY 439 (457)
Q Consensus 389 ~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~-g~~L~d~~tL~~~ 439 (457)
..+...+.+.+++|+.+++..|++.+|||++.|.+++. |..+++.....+|
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 34556789999999999999999999999999999985 5566776666665
No 293
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=63.66 E-value=24 Score=25.00 Aligned_cols=56 Identities=13% Similarity=0.341 Sum_probs=36.6
Q ss_pred EeecCCchHHHHHHHHhhhhCCCC--CceEEEECCeecccCccccccCcCcCcEEEEEEEecC
Q 012749 167 LEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (457)
Q Consensus 167 ~~v~~~~tV~~lK~~I~~~~gip~--~~q~L~~~g~~L~d~~tL~~y~I~~~~~i~l~~~~~~ 227 (457)
+++ ...||.+|.+.+..+.++.. ..-.+.-+|+...+ .++-+++|++|.++....+
T Consensus 16 ~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~PpvsG 73 (74)
T 3rpf_C 16 FFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVCG 73 (74)
T ss_dssp EEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBCC
T ss_pred Eee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCCC
Confidence 555 56899999999986543322 33455566666432 3567889999987754433
No 294
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=60.52 E-value=29 Score=25.57 Aligned_cols=37 Identities=14% Similarity=0.180 Sum_probs=31.3
Q ss_pred CceEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCC
Q 012749 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI 112 (457)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gi 112 (457)
+.|.|.+ ...+..+.+.|+++.+..+|+++|.++..+
T Consensus 11 ~~~KVK~-yy~DDIiAIrvP~di~~~~L~dKi~~RLk~ 47 (85)
T 1ip9_A 11 KTTKIKF-YYKDDIFALMLKGDTTYKELRSKIAPRIDT 47 (85)
T ss_dssp CCEEEEE-CBTTCCEEEEECSCCCHHHHHHHHHHHHTS
T ss_pred CceEEEE-EecCcEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4566666 355789999999999999999999999888
No 295
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=58.43 E-value=36 Score=32.64 Aligned_cols=43 Identities=16% Similarity=0.219 Sum_probs=38.0
Q ss_pred cCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEE
Q 012749 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 49 (457)
Q Consensus 7 ~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~ 49 (457)
..+-....+.+.+.+|+.++++++++..+++++.|.+++.+..
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~ 360 (396)
T 4eut_A 318 LQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRR 360 (396)
T ss_dssp TTTTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSE
T ss_pred eccceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCC
Confidence 3456677899999999999999999999999999999998843
No 296
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=58.24 E-value=23 Score=32.85 Aligned_cols=71 Identities=8% Similarity=0.015 Sum_probs=50.1
Q ss_pred CeeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCC-eEEEeC---Cc--ccCCCccccccccCCCCeEEEE
Q 012749 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA---GK--QLEDGRTLADYNIQKESTLHLV 298 (457)
Q Consensus 228 ~~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~-q~L~~~---g~--~L~d~~tl~~~~i~~~~tl~l~ 298 (457)
.+.+.|..++|...++.+++..|+.+|-..|+++.||.... .-|.+. |. -|+..+++.+.......++++.
T Consensus 17 ~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~fr 93 (296)
T 3qij_A 17 QGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFN 93 (296)
T ss_dssp CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEE
T ss_pred eEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEE
Confidence 46778889999999999999999999999999999986554 445543 21 2666777766543222344443
No 297
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=57.58 E-value=14 Score=25.93 Aligned_cols=61 Identities=13% Similarity=0.130 Sum_probs=38.0
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEE
Q 012749 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~ 70 (457)
|.|.|..++|+. .++....|+.++-..+....+-+ .--...+|+..+-+ +.+.+++.+.++
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~~~--~vaa~vNg~lvdl~-----~~L~~~~~Veiv 61 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLGDH--CIGAKVNHKLVPLS-----YVLNSGDQVEVL 61 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHHHT--EEEEEETTEECCTT-----CBCCSSSBEEEE
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccccc--eEEEEECCEEeCCC-----cCcCCCCEEEEE
Confidence 889999999987 46677899999988885432211 11123577765543 334445555543
No 298
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=57.32 E-value=54 Score=23.96 Aligned_cols=61 Identities=20% Similarity=0.312 Sum_probs=49.1
Q ss_pred EEEEEecCCchHHHHHHHHhhhc-C--C---CCCCeEEEEcC--eecCCCCcccccCCCCCCEEEEEEe
Q 012749 392 TITLEVESSDTIDNVKAKIQDKE-G--I---PPDQQRLIFAG--KQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~-~--i---p~~~q~l~~~g--~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
...+-|+..+|+.++=++++... | + |-.-.+..++| +.+..+.|+++.||.+-+.|.+...
T Consensus 14 ~~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 14 IQLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence 35678999999999999988764 2 2 22245777888 8999999999999999999988754
No 299
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=56.80 E-value=51 Score=24.81 Aligned_cols=74 Identities=14% Similarity=0.249 Sum_probs=45.7
Q ss_pred ceeeEEEeCC------CCEEEEEecCCchHHHHHHHHhhhcC-CCC---------CCe-------EEEEcCeecCCCCcc
Q 012749 380 GMQIFVKTLT------GKTITLEVESSDTIDNVKAKIQDKEG-IPP---------DQQ-------RLIFAGKQLEDGRTL 436 (457)
Q Consensus 380 ~~~i~v~~~~------g~~~~l~v~~~~tV~~lK~~i~~~~~-ip~---------~~q-------~l~~~g~~L~d~~tL 436 (457)
.|+|.|+... |. ..++++ ..||.+|...+..... +.. ... .+..||+...... -
T Consensus 3 mm~v~V~~fa~lr~~~g~-~~~~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~-~ 79 (99)
T 2l52_A 3 MAEVKVKLFANLREAAGT-PELPLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE-G 79 (99)
T ss_dssp CCEEEEEECTHHHHHHSS-SEEEEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-S
T ss_pred ceEEEEEEeHHHHHHhCC-CeEEEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-C
Confidence 3567776532 32 233444 6899999999987741 111 012 5677887664221 1
Q ss_pred cccCCCCCCEEEEEEecCCC
Q 012749 437 ADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 437 ~~~~i~~~~~i~l~~rl~GG 456 (457)
.+.-+++|+.|.+.-...||
T Consensus 80 ~~~~L~~gD~V~i~ppv~GG 99 (99)
T 2l52_A 80 LETLLKDSDEIGILPPVSGG 99 (99)
T ss_dssp TTSCCCTTEEEEEECCCSCC
T ss_pred CCCCCCCCCEEEEECCCCCC
Confidence 23457889999998888777
No 300
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=54.90 E-value=19 Score=34.56 Aligned_cols=51 Identities=22% Similarity=0.335 Sum_probs=40.5
Q ss_pred CCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeec--CCCCcccccC
Q 012749 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL--EDGRTLADYN 440 (457)
Q Consensus 390 g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L--~d~~tL~~~~ 440 (457)
-....+.+++..|+.++++.+++.++++++.|.+.+.+..+ +....-..|.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~ 373 (396)
T 4eut_A 321 MTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFP 373 (396)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSC
T ss_pred ceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCC
Confidence 44567888999999999999999999999999999987433 3444444444
No 301
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=54.15 E-value=71 Score=24.89 Aligned_cols=74 Identities=16% Similarity=0.183 Sum_probs=43.3
Q ss_pred ceEEEEEccC------C--cEEEEEEcC---CCCHHHHHHHHhhhhCCCCCC-------------cEEEecCcccCCCCc
Q 012749 76 GMQIFVKTLT------G--KTITLEVES---SDTIDNVKAKIQDKEGIPPDQ-------------QRLIFAGKQLEDGRT 131 (457)
Q Consensus 76 ~~~i~vk~~~------g--~~~~l~v~~---~~tV~~lK~~i~~~~gip~~~-------------q~L~~~g~~L~d~~t 131 (457)
.|.|.|+... | +.+.++++. ..||.+|-+.+.+.. |..+ -.++.||+..+-- -
T Consensus 11 ~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlVN~~di~~l-~ 87 (114)
T 1wgk_A 11 PLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLINDADWELL-G 87 (114)
T ss_dssp CEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEESSSBHHHH-C
T ss_pred CcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEECCeeeecc-C
Confidence 3778887543 3 366788884 359999999998765 1111 2233344321100 0
Q ss_pred ccccccccCCcceEEEEeecc
Q 012749 132 LADYNIQKESTLHLVLRLRGG 152 (457)
Q Consensus 132 l~~y~i~~~s~i~l~~~~~~~ 152 (457)
=.+|-+++|+.|.+.....||
T Consensus 88 gldt~L~dGDeV~iip~vaGG 108 (114)
T 1wgk_A 88 ELDYQLQDQDSILFISTLHGG 108 (114)
T ss_dssp TTTCBCCSSEEEEEEECSCCC
T ss_pred CcCcCCCCCCEEEEeCCCCCC
Confidence 125778889988876666665
No 302
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=53.93 E-value=24 Score=25.25 Aligned_cols=54 Identities=4% Similarity=0.095 Sum_probs=37.1
Q ss_pred eEEEEeecCccHHHHHHHHhhhcC-----CCCCCeEEEeCCcccCCCccccccccCCCCeEEEEE
Q 012749 240 TITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 299 (457)
Q Consensus 240 ~~~~~v~~~~tV~~lK~~I~~~~~-----ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~ 299 (457)
..+++ .+..||.+|.+.+..+++ ++.....+..||+... .+..+++|+.+.++.
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~-----~~~~l~~gD~V~i~P 76 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVS-----FDHPLTDGDEVAFFP 76 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECC-----TTCBCCTTCEEEEEC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECC-----CCCCCCCCCEEEEeC
Confidence 45555 567799999999886643 3333445667787654 355789999987764
No 303
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=53.53 E-value=34 Score=26.15 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=33.5
Q ss_pred CceEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCC
Q 012749 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114 (457)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~ 114 (457)
++.-|.|-..+|...++.|++.+|++++-+.+..+.+...
T Consensus 8 ~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~ 47 (100)
T 1wgr_A 8 RPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALS 47 (100)
T ss_dssp SCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCC
T ss_pred CCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCC
Confidence 3455666678999999999999999999999999887653
No 304
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=52.24 E-value=66 Score=23.49 Aligned_cols=60 Identities=15% Similarity=0.202 Sum_probs=49.5
Q ss_pred EEEEEecCCchHHHHHHHHhhhc-CC--C--CCCeEEEEcCee--cCCCCcccccCCCCCCEEEEEE
Q 012749 392 TITLEVESSDTIDNVKAKIQDKE-GI--P--PDQQRLIFAGKQ--LEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~-~i--p--~~~q~l~~~g~~--L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
...+-|+..+|+.++=++++... |. + |.-.+..++|.. +..+.|+++.||++-+.|.+..
T Consensus 16 ~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 16 VQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 35678999999999999988764 32 2 235788899998 9999999999999999998865
No 305
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=52.01 E-value=46 Score=24.33 Aligned_cols=59 Identities=12% Similarity=0.179 Sum_probs=40.6
Q ss_pred ceEEEeecCCchHHHHHHHHhhhhC-C-----C-----CCceEEEECCeecccCccccccCcCcCcEEEEEEEec
Q 012749 163 KTITLEVESSDTIDNVKAKIQDKEG-I-----P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (457)
Q Consensus 163 ~~~~~~v~~~~tV~~lK~~I~~~~g-i-----p-----~~~q~L~~~g~~L~d~~tL~~y~I~~~~~i~l~~~~~ 226 (457)
....++++...||.+|.+.+..+.. + . .....+.-+|+.... ++-+++|+.|.++....
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~ 87 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVS 87 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCS
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCC
Confidence 4567888888899999999977652 1 1 012456667776654 56788899998775443
No 306
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=51.75 E-value=59 Score=24.97 Aligned_cols=72 Identities=10% Similarity=0.211 Sum_probs=51.3
Q ss_pred eeeeeeecCCceEEEeecCCchHHHHHHHHhhhhCCCCCceEEE---ECCee--cccCccccccCcCcCcEEEEEEE
Q 012749 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQ--LEDGRTLADYNIQKESTLHLVLR 224 (457)
Q Consensus 153 ~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~---~~g~~--L~d~~tL~~y~I~~~~~i~l~~~ 224 (457)
+...|...+...+++.+....|+.+++..+.++.+...+.+.|+ ++|.. |+++..--.-.+.-+..|++..+
T Consensus 10 i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 10 IFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp CCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred eEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 34445566778888999999999999999999999887778776 56643 45444333335566666766654
No 307
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=50.88 E-value=24 Score=26.87 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=31.1
Q ss_pred CceEEEEEccC-------CcEEEEEEcCCCCHHHHHHHHhhhhCCC
Q 012749 75 GGMQIFVKTLT-------GKTITLEVESSDTIDNVKAKIQDKEGIP 113 (457)
Q Consensus 75 ~~~~i~vk~~~-------g~~~~l~v~~~~tV~~lK~~i~~~~gip 113 (457)
+.+.|.|...+ +..+.+-|+++.+..+|..+|.++.+++
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 44666666442 5578999999999999999999998765
No 308
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=50.25 E-value=17 Score=25.89 Aligned_cols=58 Identities=7% Similarity=0.168 Sum_probs=39.8
Q ss_pred ecCCcEEEEEeecCccHHHHHHHhhcccCCCCCCceEEecCeeccCCCcccccccccCceEEEEEE
Q 012749 311 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376 (457)
Q Consensus 311 ~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 376 (457)
..||+.+.+ +..|+.+|-+ .+++++..--...+|..++.+. +.+.-++.|+.+.+...
T Consensus 4 ~vNG~~~e~---~~~Tl~~LL~----~l~~~~~~vAV~vNg~iVpr~~-~~~~~L~dGD~veIv~~ 61 (73)
T 2kl0_A 4 TINGEQREV---QSASVAALMT----ELDCTGGHFAVALNYDVVPRGK-WDETPVTAGDEIEILTP 61 (73)
T ss_dssp EETTEEECC---CCSBHHHHHH----HTTCCSSSCEEEESSSEECHHH-HTTCBCCTTCEEEEECC
T ss_pred EECCEEEEc---CCCcHHHHHH----HcCCCCCcEEEEECCEECChHH-cCcccCCCCCEEEEEcc
Confidence 346776554 6799999955 4567776555567888775443 55667888888888743
No 309
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=49.92 E-value=57 Score=24.08 Aligned_cols=65 Identities=11% Similarity=0.151 Sum_probs=42.2
Q ss_pred cceeeeeeecCCceEEEeecCC-chHHHHHHHHhhhhCCCCCceEEEECCeecccCccccccCcCcCcEEEEEEEe
Q 012749 151 GGMQIFVKTLTGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (457)
Q Consensus 151 ~~~~i~V~~~~g~~~~~~v~~~-~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~I~~~~~i~l~~~~ 225 (457)
..|.|.| +|+. ++++.. .||.+|.+.+ ++++....+..+|+....+ ...++-+++|+.|.++...
T Consensus 19 ~~M~I~v---NGe~--~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~V 84 (87)
T 1tyg_B 19 GRHMLQL---NGKD--VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHFV 84 (87)
T ss_dssp ---CEEE---TTEE--ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEEC
T ss_pred cceEEEE---CCEE--EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEccc
Confidence 3455555 4554 445666 8999998876 5666666777888876432 3445679999999887543
No 310
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=48.54 E-value=38 Score=27.00 Aligned_cols=56 Identities=21% Similarity=0.313 Sum_probs=38.7
Q ss_pred EEEecC----CchHHHHHHHHhhhcCCCCCCeEEEE--cCeecC-----C--CCcccccCCCCCCEEEEE
Q 012749 394 TLEVES----SDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLE-----D--GRTLADYNIQKESTLHLV 450 (457)
Q Consensus 394 ~l~v~~----~~tV~~lK~~i~~~~~ip~~~q~l~~--~g~~L~-----d--~~tL~~~~i~~~~~i~l~ 450 (457)
.+.|++ ..|..+|-..+..++|.+. .+.+.- +.+.|- | +++|++.|+++|+.|.+.
T Consensus 9 vl~v~~~dl~~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~ 77 (127)
T 3onh_A 9 VIKLSSDCLNKMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFS 77 (127)
T ss_dssp EEEECHHHHHHCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEE
T ss_pred EEEeCcccccccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEE
Confidence 455654 4589998888888888764 454442 233332 2 369999999999998775
No 311
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=48.32 E-value=18 Score=28.24 Aligned_cols=76 Identities=16% Similarity=0.281 Sum_probs=42.2
Q ss_pred CeeEEEEccC------CceEEEEeec----CccHHHHHHHHhhhcCCCCCCeEEE-eCC--c------ccCCCccc----
Q 012749 228 GMQIFVKTLT------GKTITLEVES----SDTIDNVKAKIQDKEGIPPDQQRLI-FAG--K------QLEDGRTL---- 284 (457)
Q Consensus 228 ~~~i~V~~~~------g~~~~~~v~~----~~tV~~lK~~I~~~~~ip~~~q~L~-~~g--~------~L~d~~tl---- 284 (457)
.|.|.|+... |+...+++.. ..||++|-+.+.+++. ...-.|. -+| . .|-+++..
T Consensus 4 ~m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~--~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~ 81 (110)
T 2k9x_A 4 HNHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYV--KERPDLLVDQTGQTLRPGILVLVNSCDAEVVG 81 (110)
T ss_dssp SSCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTC--CSCHHHHBCSSSSSBCTTEEEEESSSBHHHHT
T ss_pred ccEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHcc--ccchhhEecCCCcccCCCeEEEECCeeeeccC
Confidence 3455555432 4555677763 2499999999988752 1111111 112 1 12222222
Q ss_pred -cccccCCCCeEEEEEeecCce
Q 012749 285 -ADYNIQKESTLHLVLRLRGGM 305 (457)
Q Consensus 285 -~~~~i~~~~tl~l~~~~~~~~ 305 (457)
.+|.+++||.|.+++..+++.
T Consensus 82 gldt~L~dgD~V~fistlhg~~ 103 (110)
T 2k9x_A 82 GMDYVLNDGDTVEFISTLHGGL 103 (110)
T ss_dssp SSCCCCCSSCEEEEEECCCCC-
T ss_pred CcccCCCCcCEEEEeCCCcccc
Confidence 457899999988876666553
No 312
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=47.48 E-value=50 Score=23.87 Aligned_cols=64 Identities=20% Similarity=0.261 Sum_probs=55.0
Q ss_pred EEEEecCCchHHHHHHHHhhhcCCCCCCeEEEE-cCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 393 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 393 ~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~-~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
..+.|+.......+-...++.+.+|+..--++- +|.-++...|-...-++.||.+.|.-|-|=|
T Consensus 26 kvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDRVG 90 (92)
T 1j0g_A 26 KVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVG 90 (92)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCSSC
T ss_pred eEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEeccccccc
Confidence 467899999899999999999999998876654 6888999999888888999999999887755
No 313
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=46.44 E-value=15 Score=28.33 Aligned_cols=70 Identities=24% Similarity=0.350 Sum_probs=53.4
Q ss_pred eEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCcc--ceEeec---cEEccCCCccccccccccccceEEEe
Q 012749 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ--QRLIFA---GKQLEDGRTLADYNIQKESTLHLVLR 72 (457)
Q Consensus 2 ~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~--q~l~~~---g~~L~~~~tl~~y~I~~~sti~l~~~ 72 (457)
.|+|..++ ...+++|...--|..+..|+-++..++.+. --|.+- -..|.-..||..|+|+..+.+++...
T Consensus 28 ~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ftp~ 102 (112)
T 2lgx_A 28 SVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFTPQ 102 (112)
T ss_dssp ECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBBC-
T ss_pred EEEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceecCC
Confidence 35666666 788899998899999999999998887643 234442 23567778999999999999888643
No 314
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=45.98 E-value=19 Score=37.82 Aligned_cols=52 Identities=29% Similarity=0.562 Sum_probs=41.3
Q ss_pred cCCcEEEEEeecCccHHHHHHHhhcccCCCCCCceEEecC-eeccCCCccccc
Q 012749 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-KQLEDGRTLADY 363 (457)
Q Consensus 312 ~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g-~~L~d~~~L~~~ 363 (457)
...+.+++.+++..|+.+++..|++.||||++.|.+.+.+ ..+++......|
T Consensus 319 ~~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 319 VSGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred cccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 3455667899999999999999999999999999999654 455666555554
No 315
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=45.74 E-value=53 Score=22.74 Aligned_cols=62 Identities=11% Similarity=0.097 Sum_probs=39.1
Q ss_pred eeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012749 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
|.|+|...+|+. .+++...|+.+|-..+.... +....-...+|+..+-+ +-+++|+.|.+..
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l--~~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt 62 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDL--GDHCIGAKVNHKLVPLS-----YVLNSGDQVEVLS 62 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHH--HHTEEEEEETTEECCTT-----CBCCSSSBEEEEE
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhcc--ccceEEEEECCEEeCCC-----cCcCCCCEEEEEE
Confidence 567777777865 56778899999988874332 12223334578766544 3344577776654
No 316
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=45.57 E-value=14 Score=28.82 Aligned_cols=75 Identities=16% Similarity=0.287 Sum_probs=44.9
Q ss_pred ceeeEEEeC------CCCEEEEEecC----CchHHHHHHHHhhhcCCCCCCeEEE-EcC--e------ecCCCCc---c-
Q 012749 380 GMQIFVKTL------TGKTITLEVES----SDTIDNVKAKIQDKEGIPPDQQRLI-FAG--K------QLEDGRT---L- 436 (457)
Q Consensus 380 ~~~i~v~~~------~g~~~~l~v~~----~~tV~~lK~~i~~~~~ip~~~q~l~-~~g--~------~L~d~~t---L- 436 (457)
+|+|.|+.. -|+...++++. ..||.+|-..+++.. |...-.|+ -+| . .|-|+.- |
T Consensus 4 ~m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~--~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~ 81 (110)
T 2k9x_A 4 HNHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNY--VKERPDLLVDQTGQTLRPGILVLVNSCDAEVVG 81 (110)
T ss_dssp SSCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTT--CCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHT
T ss_pred ccEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHc--cccchhhEecCCCcccCCCeEEEECCeeeeccC
Confidence 356666542 34556677773 249999999999875 22222222 122 1 1222222 1
Q ss_pred -cccCCCCCCEEEEEEecCCC
Q 012749 437 -ADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 437 -~~~~i~~~~~i~l~~rl~GG 456 (457)
.+|-+++||.|.+...+-||
T Consensus 82 gldt~L~dgD~V~fistlhg~ 102 (110)
T 2k9x_A 82 GMDYVLNDGDTVEFISTLHGG 102 (110)
T ss_dssp SSCCCCCSSCEEEEEECCCCC
T ss_pred CcccCCCCcCEEEEeCCCccc
Confidence 35778999999998888887
No 317
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=45.24 E-value=24 Score=26.81 Aligned_cols=38 Identities=18% Similarity=0.133 Sum_probs=31.5
Q ss_pred ceeeEEEeCC-------CCEEEEEecCCchHHHHHHHHhhhcCCC
Q 012749 380 GMQIFVKTLT-------GKTITLEVESSDTIDNVKAKIQDKEGIP 417 (457)
Q Consensus 380 ~~~i~v~~~~-------g~~~~l~v~~~~tV~~lK~~i~~~~~ip 417 (457)
.+.|.+...+ +..+.+-|+++.+..+|..+|.++.+++
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 4566666553 5579999999999999999999999876
No 318
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=43.61 E-value=44 Score=22.82 Aligned_cols=58 Identities=12% Similarity=0.200 Sum_probs=38.3
Q ss_pred ecCCcEEEEEeecCccHHHHHHHhhcccCCCCCCceEEecCeeccCCCcccccccccCceEEEEEE
Q 012749 311 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376 (457)
Q Consensus 311 ~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 376 (457)
..||+.+.+ ++.|+.+|.+.+. +++..-....+|...+.+. ..+..++.++.+.+.+.
T Consensus 3 ~vNg~~~~~---~~~tv~~ll~~l~----~~~~~v~vavN~~~v~~~~-~~~~~L~dgD~v~i~~~ 60 (64)
T 2cu3_A 3 WLNGEPRPL---EGKTLKEVLEEMG----VELKGVAVLLNEEAFLGLE-VPDRPLRDGDVVEVVAL 60 (64)
T ss_dssp EETTEEECC---TTCCHHHHHHHHT----BCGGGEEEEETTEEEEGGG-CCCCCCCTTCEEEEEEC
T ss_pred EECCEEEEc---CCCcHHHHHHHcC----CCCCcEEEEECCEECCccc-cCCcCCCCCCEEEEEee
Confidence 356776654 6789999988773 4444434457777765432 44566788888888753
No 319
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=43.16 E-value=61 Score=24.86 Aligned_cols=72 Identities=10% Similarity=0.211 Sum_probs=48.1
Q ss_pred eEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCcEEE---ecCcc--cCCCCcccccccccCCcceEEEE
Q 012749 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQ--LEDGRTLADYNIQKESTLHLVLR 148 (457)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~---~~g~~--L~d~~tl~~y~i~~~s~i~l~~~ 148 (457)
+-..|-..+..-+++.+....|+.+++..++++.+...+.+.|. ++|.. |+++..--.-.+.-+..+++..+
T Consensus 10 i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 10 IFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp CCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred eEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 33444456667788889999999999999999999877677776 67744 34443322233444555555543
No 320
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=42.86 E-value=18 Score=26.17 Aligned_cols=60 Identities=13% Similarity=0.274 Sum_probs=39.2
Q ss_pred ecCCcEEEEEeecCccHHHHHHHhhcccCCC-CCCceEEecCeeccCCCcccccccccCceEEEEE
Q 012749 311 TLTGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 375 (457)
Q Consensus 311 ~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip-~~~q~l~~~g~~L~d~~~L~~~~i~~~~~l~l~~ 375 (457)
..||+.+.+....+.|+.+|-+.+ +++ +..--...+|..++.+. +.+.-++.|+.+.+..
T Consensus 4 ~vNGe~~e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr~~-~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 4 TVNGKPSTVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLEREA-FDATTVKDGDAVEFLY 64 (78)
T ss_dssp EETTEEEECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCTTH-HHHCEECSSBCEEECC
T ss_pred EECCEEEEcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECChHH-cCcccCCCCCEEEEEe
Confidence 356775543221679999996644 566 55444567888775553 5666778888888764
No 321
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=41.98 E-value=1e+02 Score=22.62 Aligned_cols=60 Identities=10% Similarity=0.136 Sum_probs=37.8
Q ss_pred EEeecCCchHHHHHHHHhhhhCC------C-------CCceEEEECCeecccCccccccCcCcCcEEEEEEEecC
Q 012749 166 TLEVESSDTIDNVKAKIQDKEGI------P-------PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (457)
Q Consensus 166 ~~~v~~~~tV~~lK~~I~~~~gi------p-------~~~q~L~~~g~~L~d~~tL~~y~I~~~~~i~l~~~~~~ 227 (457)
.+++ ...||.+|.+.+..++.- . .....+.-+|+...+..- .++-+++|++|.++....+
T Consensus 20 ~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L~~gDeV~i~Ppv~G 92 (93)
T 3dwg_C 20 SVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAIADGDSVTILPAVAG 92 (93)
T ss_dssp EEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBCCTTCEEEEEECCTT
T ss_pred EEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCCCCCCEEEEECCCCC
Confidence 4554 457999999999876520 1 112455667776553221 3567899999988765444
No 322
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=40.82 E-value=99 Score=24.20 Aligned_cols=66 Identities=12% Similarity=0.138 Sum_probs=49.9
Q ss_pred EEecCC-----cEEEEEeecCccHHHHHHHhhc-ccC-------CCCCCceEEecCeec--cCCCcccccccccCceEEE
Q 012749 309 VKTLTG-----KTITLEVESSDTIDNVKAKIQD-KEG-------IPPDQQRLIFAGKQL--EDGRTLADYNIQKESTLHL 373 (457)
Q Consensus 309 i~~~~g-----~~~~l~v~~~~Tv~~lK~~I~~-~~~-------ip~~~q~l~~~g~~L--~d~~~L~~~~i~~~~~l~l 373 (457)
...|++ --+.+.++|.++.+++-+++-. -++ |.-.+-.+..+|+.. +.+++|++.|+.--|-|++
T Consensus 27 YigWd~HllFcap~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf 106 (119)
T 3u52_E 27 YVYWPDHLLFCAPFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTV 106 (119)
T ss_dssp EEECTTCTTSCSCEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEE
T ss_pred EEEecCCeeecCceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEE
Confidence 335666 3577999999999999888654 233 555555677788875 7789999999988888877
Q ss_pred E
Q 012749 374 V 374 (457)
Q Consensus 374 ~ 374 (457)
+
T Consensus 107 ~ 107 (119)
T 3u52_E 107 T 107 (119)
T ss_dssp E
T ss_pred e
Confidence 6
No 323
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=40.36 E-value=52 Score=30.23 Aligned_cols=67 Identities=18% Similarity=0.240 Sum_probs=46.7
Q ss_pred eEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEc-------CeecCCCCcccc----cCCCCCCEEEE
Q 012749 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-------GKQLEDGRTLAD----YNIQKESTLHL 449 (457)
Q Consensus 383 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~-------g~~L~d~~tL~~----~~i~~~~~i~l 449 (457)
+.|-..+|.+.++.|++++|+.||-..+..+.+.+.+.-+-++. -++|+|...+.+ .....+..+.+
T Consensus 34 vkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds~n~l~f 111 (281)
T 4gmv_A 34 IRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIF 111 (281)
T ss_dssp EEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTCCCEEEE
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCCCceEEE
Confidence 44445678899999999999999999999988876665555543 356777665433 34444454444
No 324
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=39.40 E-value=1.1e+02 Score=23.57 Aligned_cols=60 Identities=15% Similarity=0.216 Sum_probs=42.1
Q ss_pred EEEEccCCceEEEEeecCccHHHHHHHHhhhcC--------CCCCCeEEEe-C--Cc--cc-CCCccccccccC
Q 012749 231 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIF-A--GK--QL-EDGRTLADYNIQ 290 (457)
Q Consensus 231 i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~--------ip~~~q~L~~-~--g~--~L-~d~~tl~~~~i~ 290 (457)
+..=.++|-.+.+++..+.|+.++|+.+.+..+ -.++.|.+.. + ++ ++ ++++-|.+...-
T Consensus 22 v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf 95 (108)
T 2v1y_A 22 VECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF 95 (108)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS
T ss_pred EEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc
Confidence 334456777888999999999999999887633 3677777776 2 22 24 556777765544
No 325
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=38.94 E-value=1.2e+02 Score=22.63 Aligned_cols=24 Identities=8% Similarity=0.223 Sum_probs=19.1
Q ss_pred cEEEEEEc--CCCCHHHHHHHHhhhh
Q 012749 87 KTITLEVE--SSDTIDNVKAKIQDKE 110 (457)
Q Consensus 87 ~~~~l~v~--~~~tV~~lK~~i~~~~ 110 (457)
+...+++. ...||.+|.+.+.++.
T Consensus 20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~ 45 (99)
T 2qjl_A 20 RVHKIKMDKEDPVTVGDLIDHIVSTM 45 (99)
T ss_dssp CEEEEEECSCSCCBHHHHHHHHHHHT
T ss_pred cEEEEecCCCCCCcHHHHHHHHHHHC
Confidence 45677776 6789999999998765
No 326
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=37.93 E-value=1.1e+02 Score=22.94 Aligned_cols=69 Identities=7% Similarity=0.042 Sum_probs=46.0
Q ss_pred ceeeEEEeC-C--CCEEEEEecCCchHHHHHHHHhhh---cCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 012749 380 GMQIFVKTL-T--GKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 453 (457)
Q Consensus 380 ~~~i~v~~~-~--g~~~~l~v~~~~tV~~lK~~i~~~---~~ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl 453 (457)
.|.|-|.+. . .....++++.+.||.++-....-. ..|......+-.+|+.... +.-+++||.|.+.-.+
T Consensus 12 ~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~-----d~~L~dGDRVEIyrpl 86 (97)
T 2hj1_A 12 QINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKL-----TDVLKEGDRIEIYRPL 86 (97)
T ss_dssp EEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCT-----TCBCCTTCEEEECCCC
T ss_pred eEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECCC-----CccCCCCCEEEEEecc
Confidence 455555432 2 235677899999999998887532 2455556777888888873 4446679998876443
No 327
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=37.14 E-value=63 Score=32.77 Aligned_cols=48 Identities=17% Similarity=0.099 Sum_probs=40.8
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCC--CCeEEEEc
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFA 426 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~--~~q~l~~~ 426 (457)
.++.+.|..++|....+.+++.+|+.+|-..|+.+.|+.. +.+-|++.
T Consensus 215 ~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~~ 264 (555)
T 3au4_A 215 QEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEY 264 (555)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEEE
T ss_pred CCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEEE
Confidence 3567788889999999999999999999999999999974 56667653
No 328
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=36.87 E-value=50 Score=23.26 Aligned_cols=56 Identities=11% Similarity=0.130 Sum_probs=37.8
Q ss_pred ceEEEeecCCchHHHHHHHHhhhhCCCCCce--EEEECCeecccCccccccCcCcCcEEEEEEE
Q 012749 163 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ--RLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (457)
Q Consensus 163 ~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q--~L~~~g~~L~d~~tL~~y~I~~~~~i~l~~~ 224 (457)
....+++....||.+|.+.+...+.- .... .+..+|+.... +.-+++|+.|.++..
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p~-~~~v~~~v~vNg~~v~~-----~~~L~~gD~V~i~pp 73 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYPQ-INNKKFQVAVNEEFVQK-----SDFIQPNDTVALIPP 73 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCGG-GTTCCCEEEETTEEECT-----TSEECTTCEEEEECS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCcc-hhcceEEEEECCEECCC-----CCCcCCCCEEEEECC
Confidence 34567777788999999998765310 1222 56677877754 357888998877643
No 329
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=36.32 E-value=50 Score=25.57 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=27.7
Q ss_pred eeeEEEecCCcEEEEEeecCccHHHHHHHhhcc
Q 012749 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 337 (457)
Q Consensus 305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~ 337 (457)
..+.+=..+|-.+.++++.++|+.++|+.+.+.
T Consensus 20 v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~e 52 (108)
T 2v1y_A 20 ILVECLLPNGMIVTLECLREATLITIKHELFKE 52 (108)
T ss_dssp EEEEEECTTSCEEEEEEETTCBHHHHHHHHHHH
T ss_pred EEEEEEcCcEEEEEEEeeccccHHHHHHHHHHH
Confidence 345556788988999999999999999998765
No 330
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=35.95 E-value=30 Score=25.04 Aligned_cols=26 Identities=27% Similarity=0.199 Sum_probs=23.7
Q ss_pred EEEEEeecCccHHHHHHHhhcccCCC
Q 012749 316 TITLEVESSDTIDNVKAKIQDKEGIP 341 (457)
Q Consensus 316 ~~~l~v~~~~Tv~~lK~~I~~~~~ip 341 (457)
.++|.|+++.+..+|..+|..+++++
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHccc
Confidence 57799999999999999999998875
No 331
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=35.85 E-value=59 Score=29.44 Aligned_cols=55 Identities=16% Similarity=0.143 Sum_probs=37.0
Q ss_pred eeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEc-------CeecCCCCcc
Q 012749 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-------GKQLEDGRTL 436 (457)
Q Consensus 382 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~~-------g~~L~d~~tL 436 (457)
-|.|-..+|...++.|++++|+.||=..+..+.+++.+.-+.++. -|+|+|...+
T Consensus 10 ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V 71 (256)
T 3hk0_A 10 DVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELV 71 (256)
T ss_dssp EEEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBH
T ss_pred EEEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhH
Confidence 345556778899999999999999999999988776655555553 4567776543
No 332
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=35.53 E-value=1.1e+02 Score=24.55 Aligned_cols=43 Identities=9% Similarity=0.173 Sum_probs=33.7
Q ss_pred EEEeecCccHHHHHHHHhhhcCCCCCCeEEE-eCCcccC-CCccc
Q 012749 242 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLE-DGRTL 284 (457)
Q Consensus 242 ~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~-~~g~~L~-d~~tl 284 (457)
.+-|.++.||+++...|.++.++++++-.++ |.+..+. .+.++
T Consensus 56 KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m 100 (130)
T 2zjd_A 56 KFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPI 100 (130)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBH
T ss_pred EEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchH
Confidence 4578899999999999999999999987777 7665543 34444
No 333
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=34.71 E-value=75 Score=21.70 Aligned_cols=57 Identities=9% Similarity=0.138 Sum_probs=38.4
Q ss_pred CCceEEEeecCCchHHHHHHHHhhhhCCCCCceEEEECCeecccCccccccCcCcCcEEEEEEE
Q 012749 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (457)
Q Consensus 161 ~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~I~~~~~i~l~~~ 224 (457)
+|+. +++....||.+|.+.+ +++.....+..+|+..... ...++-+++|+.|.++..
T Consensus 6 Ng~~--~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~ 62 (66)
T 1f0z_A 6 NDQA--MQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQV 62 (66)
T ss_dssp SSCE--ECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEES
T ss_pred CCEE--EEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEee
Confidence 4554 3556778999998876 4566666677778776431 223456889999977653
No 334
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A*
Probab=34.60 E-value=2.9e+02 Score=26.06 Aligned_cols=105 Identities=10% Similarity=0.110 Sum_probs=69.1
Q ss_pred cCccHHHHHHHhhcccCCCCCCceEEecCeeccCCCcccccccccCceEEEEEEecCceeeEEEeCCCCEEEEEecC-Cc
Q 012749 323 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES-SD 401 (457)
Q Consensus 323 ~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~L~~~~i~~~~~l~l~~~~~~~~~i~v~~~~g~~~~l~v~~-~~ 401 (457)
.+.|+.++++.|.+++. .|-..+ .+.+......+.+|+|...-.+.=.+.+.+ ..
T Consensus 117 aG~T~~e~~~~I~~~L~----------------------~~~~~P--~V~V~v~~~~~~~V~V~GeV~~PG~y~l~~~~~ 172 (359)
T 2j58_A 117 AGKTVSQVRQDITSRLT----------------------TYIESP--QVDVSIAAFRSQKVYVTGEVANSGKQAITNIPL 172 (359)
T ss_dssp TTCCHHHHHHHHHHHHT----------------------TTSSSC--CEEEEEEECCSCEEEEEESBSSCEEEECCSSCC
T ss_pred CCCCHHHHHHHHHHHHH----------------------HhccCC--eEEEEEccCCceEEEEEceecCCeEEEeCCCCC
Confidence 57899999999998843 121122 344444445677899987666666788888 88
Q ss_pred hHHHHHHHHhhhcC-CCCCCeEEEEcCeec--------CCCCcccccCCCCCCEEEEEE
Q 012749 402 TIDNVKAKIQDKEG-IPPDQQRLIFAGKQL--------EDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 402 tV~~lK~~i~~~~~-ip~~~q~l~~~g~~L--------~d~~tL~~~~i~~~~~i~l~~ 451 (457)
||.+.-.+--..+. -......|.-+|+.. .+...-.++-+++||+|++--
T Consensus 173 tl~~ai~~AGG~t~~a~~~~V~l~R~g~~~~idl~~ll~~g~~~~~~~L~~GD~I~Vp~ 231 (359)
T 2j58_A 173 TVMDAINAAGGLAADADWRNVVLTHNGKDTKISLYALMQKGDLTQNHLLYHGDILFIPS 231 (359)
T ss_dssp BHHHHHHHTTSBCTTBCTTCEEEEETTEEEEECHHHHHTTCBGGGCCBCCTTCEEEECB
T ss_pred cHHHHHHHcCCCCcccccceEEEEECCeEEEEEHHHHhhcCCcccceeccCCCeEEEee
Confidence 99887776554432 233566777788743 223334557789999998753
No 335
>3chb_D Cholera toxin; toxin/receptor complex, pentasaccharide; HET: GAL NGA SIA BGC MES; 1.25A {Vibrio cholerae} SCOP: b.40.2.1 PDB: 2chb_D* 1jr0_D* 1fgb_D 1eei_D* 1llr_D* 1md2_D* 1pzj_D* 1pzk_D* 1rcv_D* 1rd9_D* 1rdp_D* 1rf2_D* 1s5b_D 1s5c_D 1s5d_D* 1s5e_D* 1s5f_D* 1chp_D 1chq_D 1ct1_D* ...
Probab=33.88 E-value=43 Score=24.25 Aligned_cols=44 Identities=25% Similarity=0.348 Sum_probs=0.0
Q ss_pred eEEEecCCcEEEEEeecCccHHHHHHHhhc---------ccCCCCCCceEE-ecCe
Q 012749 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQD---------KEGIPPDQQRLI-FAGK 352 (457)
Q Consensus 307 i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~---------~~~ip~~~q~l~-~~g~ 352 (457)
+.|..-+|-+|.++|+.+.-++.-|+.|+. .+++.++ +|+ |+++
T Consensus 39 viisf~ngatfqvevpgsqh~~sqk~~~ermkdtlr~ay~t~~ki~--klcvwnnk 92 (104)
T 3chb_D 39 AIITFKNGATFQVEVPGSQHIDSQKKAIERMKDTLRIAYLTEAKVE--KLCVWNNK 92 (104)
T ss_dssp EEEECTTCCEEEECCCCTTSCHHHHHHHHHHHHHHHHHHHHTCCEE--EEEEETTS
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHHHHHHHHHHHhccchh--heeeecCC
No 336
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.89 E-value=76 Score=23.69 Aligned_cols=49 Identities=14% Similarity=0.266 Sum_probs=34.9
Q ss_pred chHHHHHHHHhhhcCCCCCCeEEEE--cCeecCCCCcccccCCCCCCEEEEEEe
Q 012749 401 DTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 401 ~tV~~lK~~i~~~~~ip~~~q~l~~--~g~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
.+..||+.+.+++.+++...-+|+. +|..++|+.-+..+ +..|+.+.++
T Consensus 28 ~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tL---p~nT~lmvL~ 78 (91)
T 2eel_A 28 SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTL---GDNTHFMILE 78 (91)
T ss_dssp SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTS---CSSEEEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhC---CCCCEEEEEc
Confidence 4799999999999999865666655 69999877533332 2456666654
No 337
>1rax_A Protein (RA-domain of RAL guanosine dissociation stimulator); RAS-binding domain, ralgef, ralgds, RAS; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=31.89 E-value=1.1e+02 Score=23.70 Aligned_cols=70 Identities=24% Similarity=0.365 Sum_probs=45.3
Q ss_pred eEEEEcCCCcEEE-EEecCCCcHHHHHHHHhhhhCCCCc---cceEeeccEEccCCCccc-------cccccccccceEE
Q 012749 2 QIFVKTLTGKTIT-LEVESSDTIDNVKAKIQDKEGIPPD---QQRLIFAGKQLEDGRTLA-------DYNIQKESTLHLV 70 (457)
Q Consensus 2 ~i~~~~~~g~~~~-~~v~~~dtv~~ik~ki~~~~gip~~---~q~l~~~g~~L~~~~tl~-------~y~I~~~sti~l~ 70 (457)
.|.+++.+|.-+. |.+...|....+-++.-+|+++..+ ...| + +.|.+++-|. .|-+.......++
T Consensus 32 RVs~d~~~gn~YKSIlltsqDktp~VI~raL~Khnl~~~~~~~y~L-~--Q~Lp~~kEL~iPd~aNVFYAm~~s~~~dFv 108 (115)
T 1rax_A 32 RVSLDVDNGNMYKSILVTSQDKAPAVIRKAMDKHNLEEEEPEDYEL-L--QILSDDRKLKIPENANVFYAMNSTANYDFV 108 (115)
T ss_dssp EEEESSSSCCCCEEEEEETTCCHHHHHHHHHHHHTCTTSCSTTEEE-E--EECSSSCEEEECTTSCHHHHSCTTSCCEEE
T ss_pred EEEEecCCCcEEEEEEEecCCCcHHHHHHHHHHcCCCCCCccceEE-E--EEcCCCCeEecCCCcceEEEEcCCCCccEE
Confidence 4667777786554 8899999999999999999998743 2233 1 3444433221 3445555556666
Q ss_pred Eeec
Q 012749 71 LRLR 74 (457)
Q Consensus 71 ~~~~ 74 (457)
+|.+
T Consensus 109 LR~r 112 (115)
T 1rax_A 109 LKKR 112 (115)
T ss_dssp EEEC
T ss_pred Eeec
Confidence 6654
No 338
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=31.84 E-value=83 Score=23.82 Aligned_cols=61 Identities=11% Similarity=0.245 Sum_probs=41.2
Q ss_pred ceEEEeecCCchHHHHHHHHhhhhCCCCC-----------ceEEEECC-eeccc------CccccccCcCcCcEEEEEE
Q 012749 163 KTITLEVESSDTIDNVKAKIQDKEGIPPD-----------QQRLIFAG-KQLED------GRTLADYNIQKESTLHLVL 223 (457)
Q Consensus 163 ~~~~~~v~~~~tV~~lK~~I~~~~gip~~-----------~q~L~~~g-~~L~d------~~tL~~y~I~~~~~i~l~~ 223 (457)
....++++++.|..++-+.+.+.-.+... ...|.+.+ ..|+. +++|.+.|+.+|..|++.-
T Consensus 5 ~~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~VtD 83 (98)
T 1y8x_B 5 LPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVAD 83 (98)
T ss_dssp CCCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEEC
T ss_pred CcEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEEC
Confidence 35578999999999999999875333222 23333332 23332 5689999999999988753
No 339
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=31.18 E-value=73 Score=22.96 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=35.3
Q ss_pred eeeeecCCceEEEeecCCchHHHHHHHHhhhhCCCCCceEEEE
Q 012749 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 197 (457)
Q Consensus 155 i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~ 197 (457)
+.+..++++.-.++|.+..|+.+.-.+.-++.++.++. .-+|
T Consensus 4 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~-C~V~ 45 (77)
T 1c1y_B 4 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPEC-CAVF 45 (77)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGG-EEEE
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCCHHH-eEEE
Confidence 55667888888999999999999999999999998854 4444
No 340
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=31.05 E-value=1.5e+02 Score=21.36 Aligned_cols=56 Identities=11% Similarity=0.202 Sum_probs=35.8
Q ss_pred EEeecCccHHHHHHHHhhhcC------C-----CCCCeEEEeCCcccCCCccccccccCCCCeEEEEE
Q 012749 243 LEVESSDTIDNVKAKIQDKEG------I-----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 299 (457)
Q Consensus 243 ~~v~~~~tV~~lK~~I~~~~~------i-----p~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~ 299 (457)
+++....||.+|.+.+..+++ + ......+..||+...... -.+..+++|+.+.++.
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~p 85 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLFP 85 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEEC
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEEEEeC
Confidence 345566899999999987752 1 013345666777654221 2345689999987764
No 341
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=30.73 E-value=76 Score=26.62 Aligned_cols=61 Identities=16% Similarity=0.270 Sum_probs=42.2
Q ss_pred EEEecCCchHHHHHHHHhhhcC-C---------CCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012749 394 TLEVESSDTIDNVKAKIQDKEG-I---------PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~~-i---------p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 456 (457)
.++++. .||.+|...+...+. + ......+..||+......- .+.-+++|+.|.+.-...||
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~-~dt~L~dGDeVai~PpVsGG 87 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQG-LSTPLSPGATLDLFPPVAGG 87 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTG-GGCBCCTTCEEEEECSCCSE
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcCC-CccCCCCCCEEEEECccccc
Confidence 445665 899999999987641 1 0234467778887765322 23458889999998888887
No 342
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=30.27 E-value=1.2e+02 Score=24.15 Aligned_cols=52 Identities=21% Similarity=0.261 Sum_probs=36.9
Q ss_pred CchHHHHHHHHhhhhCCCCCceEEEE--CCeecc-----c--CccccccCcCcCcEEEEEEE
Q 012749 172 SDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLE-----D--GRTLADYNIQKESTLHLVLR 224 (457)
Q Consensus 172 ~~tV~~lK~~I~~~~gip~~~q~L~~--~g~~L~-----d--~~tL~~y~I~~~~~i~l~~~ 224 (457)
..|..+|-+.++.+.|.+. ...+.- ..+.|- | +++|.+.|+..|+.+.+.-.
T Consensus 19 ~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~DE 79 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSDE 79 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEES
T ss_pred ccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEcc
Confidence 4588898888888888874 344332 234442 2 58999999999999977653
No 343
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=30.18 E-value=77 Score=24.94 Aligned_cols=57 Identities=12% Similarity=0.137 Sum_probs=39.6
Q ss_pred EEecCCchHHHHHHHHhhhcCCCCCCe-EEEEcCeecCCCCcccc---cCCCCCCEEEEEE
Q 012749 395 LEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLAD---YNIQKESTLHLVL 451 (457)
Q Consensus 395 l~v~~~~tV~~lK~~i~~~~~ip~~~q-~l~~~g~~L~d~~tL~~---~~i~~~~~i~l~~ 451 (457)
+-|+.+.||+++...|..+.++++++- -|+-++.....+.++++ +.-.++.-|++..
T Consensus 52 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~DGfLyv~Y 112 (119)
T 3h9d_A 52 FLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKY 112 (119)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHHHHHcCCCCCeEEEEE
Confidence 568999999999999999999998874 44447775555556543 2222344566654
No 344
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=29.76 E-value=66 Score=23.74 Aligned_cols=56 Identities=18% Similarity=0.215 Sum_probs=32.0
Q ss_pred EEEec-CCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccc-----cccccccceEEEeec
Q 012749 14 TLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY-----NIQKESTLHLVLRLR 74 (457)
Q Consensus 14 ~~~v~-~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y-----~I~~~sti~l~~~~~ 74 (457)
++.++ .+-+|.++|+.|-.+.+.-...-.|.+ .+..|-++| -|..++++-+...|.
T Consensus 21 ~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~i-----~na~T~eeY~Dd~~lIprnssViVrRvP~ 82 (86)
T 2c7h_A 21 TVTFDGLHISLCDLKKQIMGREKLKAADCDLQI-----TNAQTKEEYTDDNALIPKNSSVIVRRIPI 82 (86)
T ss_dssp EEEESSSEEEHHHHHHHHHHHHTCCTTTEEEEE-----EESSSCCEECSTTCEEETTCCEEEEEEEC
T ss_pred eEEEcCCEEEHHHHHHHHHHHhCCCCCcccEEE-----eCCCCCCccCCCceEEecCCEEEEEeccC
Confidence 34444 368999999999888776443333332 223333333 356666665544443
No 345
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=29.50 E-value=64 Score=24.54 Aligned_cols=48 Identities=15% Similarity=0.199 Sum_probs=32.5
Q ss_pred chHHHHHHHHhhhcCCCCC--CeEE--EEcCeecCCCCcccccCCCCCCEEEEEE
Q 012749 401 DTIDNVKAKIQDKEGIPPD--QQRL--IFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 401 ~tV~~lK~~i~~~~~ip~~--~q~l--~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
.+..+|+.+.+++.+++.. ..+| ..+|..++|+.-+... +..|+.+.+
T Consensus 37 ~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tL---p~nT~lmvL 88 (100)
T 1f2r_I 37 SSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCL---PSNTKFVAL 88 (100)
T ss_dssp SSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSS---CSCCEEEEE
T ss_pred CCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcC---CCCCEEEEE
Confidence 4899999999999999753 2444 3479999877543332 234555554
No 346
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=29.45 E-value=87 Score=23.06 Aligned_cols=43 Identities=12% Similarity=0.157 Sum_probs=36.1
Q ss_pred eeeeeecCCceEEEeecCCchHHHHHHHHhhhhCCCCCceEEEE
Q 012749 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 197 (457)
Q Consensus 154 ~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~ 197 (457)
.+.+..++++.-.++|.+..|+.+.-.+.-++.++.++. +-+|
T Consensus 9 ~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~-C~Vy 51 (86)
T 1wxm_A 9 TVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDC-CVVY 51 (86)
T ss_dssp EEEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSS-EEEE
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHH-eEEE
Confidence 456677888888999999999999999999999998854 4444
No 347
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=28.79 E-value=1.7e+02 Score=21.31 Aligned_cols=60 Identities=18% Similarity=0.263 Sum_probs=47.1
Q ss_pred EEEEEEcCCCCHHHHHHHHhhh-hC--CC---CCCcEEEecC--cccCCCCcccccccccCCcceEEE
Q 012749 88 TITLEVESSDTIDNVKAKIQDK-EG--IP---PDQQRLIFAG--KQLEDGRTLADYNIQKESTLHLVL 147 (457)
Q Consensus 88 ~~~l~v~~~~tV~~lK~~i~~~-~g--ip---~~~q~L~~~g--~~L~d~~tl~~y~i~~~s~i~l~~ 147 (457)
...+.|+..+|+.++=++++.. .| ++ ..-.++.++| +.|..+.|+++-||..-..|.+..
T Consensus 14 ~~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~ 81 (83)
T 2inc_C 14 IQLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIF 81 (83)
T ss_dssp EEEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEE
Confidence 3567899999999999999864 34 32 2346777999 889999999999999888776654
No 348
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=27.84 E-value=2e+02 Score=22.49 Aligned_cols=43 Identities=19% Similarity=0.309 Sum_probs=32.5
Q ss_pred EEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCccc-CCCccc
Q 012749 242 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 284 (457)
Q Consensus 242 ~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L-~d~~tl 284 (457)
.+-|.++.||+++...|.++..+++++-.++|-+..+ ..+.++
T Consensus 50 KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m 93 (118)
T 3rui_B 50 KYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALM 93 (118)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBH
T ss_pred eEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchH
Confidence 4568899999999999999999999887777643334 334444
No 349
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=27.81 E-value=1.7e+02 Score=22.78 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=32.2
Q ss_pred EEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCccc-CCCccc
Q 012749 242 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 284 (457)
Q Consensus 242 ~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L-~d~~tl 284 (457)
.+-|..+.||+++...|..+.++++++-.++|.+..+ ..+.++
T Consensus 48 KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m 91 (117)
T 1eo6_A 48 KYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTM 91 (117)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBH
T ss_pred EEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchH
Confidence 3567789999999999999999999886666654444 334444
No 350
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=27.08 E-value=1.2e+02 Score=23.85 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=48.0
Q ss_pred ceeeeeeecCCceEEEeecCCchHHHHHHHHhhhhCCCCC------ceEEE---ECCe--ecccCccccccCcCcCcEEE
Q 012749 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD------QQRLI---FAGK--QLEDGRTLADYNIQKESTLH 220 (457)
Q Consensus 152 ~~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~------~q~L~---~~g~--~L~d~~tL~~y~I~~~~~i~ 220 (457)
.+...|...+...+++.+....|+.+++..+.++.+...+ .+.|+ ++|. .|+++..--.-.+.-+..|+
T Consensus 9 ei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRLf 88 (120)
T 2dhz_A 9 EIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHLF 88 (120)
T ss_dssp CEEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEEE
T ss_pred cEEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceEE
Confidence 3444566667777888999999999999999999887554 56665 5664 34444333223445555565
Q ss_pred EEEE
Q 012749 221 LVLR 224 (457)
Q Consensus 221 l~~~ 224 (457)
+..+
T Consensus 89 vc~k 92 (120)
T 2dhz_A 89 ACTR 92 (120)
T ss_dssp EECT
T ss_pred Eeeh
Confidence 5443
No 351
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=26.97 E-value=79 Score=23.69 Aligned_cols=39 Identities=28% Similarity=0.367 Sum_probs=33.1
Q ss_pred CCEEEEEecCCchHHHHHHHHhhhcCCCCCCeE-EEEcCe
Q 012749 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGK 428 (457)
Q Consensus 390 g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~-l~~~g~ 428 (457)
...+++.|++..+=.++|+.|+..+++.+..-. +...|+
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK 66 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGK 66 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCc
Confidence 468999999999999999999999999998764 344554
No 352
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=26.76 E-value=1.9e+02 Score=21.25 Aligned_cols=43 Identities=14% Similarity=0.115 Sum_probs=30.2
Q ss_pred eeEEEeCCCC-EEEEEecC-CchHHHHHHHHhhhcCCCCCCeEEE
Q 012749 382 QIFVKTLTGK-TITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLI 424 (457)
Q Consensus 382 ~i~v~~~~g~-~~~l~v~~-~~tV~~lK~~i~~~~~ip~~~q~l~ 424 (457)
.|+-+..+.+ ...+.++. ..+|.|||..|..+.++-....-|.
T Consensus 8 ~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~ 52 (86)
T 2c7h_A 8 CVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQ 52 (86)
T ss_dssp EEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEE
T ss_pred EEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEE
Confidence 4555655543 45677775 4599999999999988865555543
No 353
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=26.59 E-value=43 Score=24.18 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=29.8
Q ss_pred EEEEEecCCchHHHHHHHHhhhcCCC-----CCCeEEEEcC
Q 012749 392 TITLEVESSDTIDNVKAKIQDKEGIP-----PDQQRLIFAG 427 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~~ip-----~~~q~l~~~g 427 (457)
.+.+.|+++.+..+|..+|.++.++. .+..+|-|..
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 43 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEc
Confidence 57899999999999999999999976 3556676643
No 354
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=25.66 E-value=88 Score=24.86 Aligned_cols=44 Identities=14% Similarity=0.113 Sum_probs=0.0
Q ss_pred EEecCCchHHHHHHHHhhhcCCCCCC-eEEEEcCeecCCCCcccc
Q 012749 395 LEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLAD 438 (457)
Q Consensus 395 l~v~~~~tV~~lK~~i~~~~~ip~~~-q~l~~~g~~L~d~~tL~~ 438 (457)
+-|+.+.||+++...|..+..+++++ .-|+-++.....+.++++
T Consensus 57 flVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~ 101 (125)
T 3m95_A 57 YLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGS 101 (125)
T ss_dssp EEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHH
T ss_pred EEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHH
No 355
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=25.40 E-value=86 Score=32.61 Aligned_cols=47 Identities=21% Similarity=0.179 Sum_probs=40.2
Q ss_pred CceeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCC-CCeEEEE
Q 012749 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF 425 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~-~~q~l~~ 425 (457)
.++.+.|..++|....+.|++.+|+.++-..|+.+.|+.. +.+-|++
T Consensus 262 ~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 262 KPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred CceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 4677888899999999999999999999999999999753 4566665
No 356
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=25.33 E-value=1.2e+02 Score=27.37 Aligned_cols=44 Identities=14% Similarity=0.112 Sum_probs=35.9
Q ss_pred eeeEEEeCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEE
Q 012749 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 424 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~ 424 (457)
+.|.|-..+|.+.++.|++++|..++-..+..+.+++.+...-+
T Consensus 35 ~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~~~l 78 (291)
T 3tca_A 35 LVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVDWCL 78 (291)
T ss_dssp EEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTTEEE
T ss_pred eEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCCeEE
Confidence 34555567888999999999999999999999999877655433
No 357
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=24.73 E-value=1e+02 Score=22.09 Aligned_cols=60 Identities=18% Similarity=0.285 Sum_probs=37.6
Q ss_pred eEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccccceEE
Q 012749 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (457)
Q Consensus 2 ~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~I~~~sti~l~ 70 (457)
+|||.+++|+.+ ++..+.|+.++...|....|-.. -....+|+..+- +|.+.++..+.++
T Consensus 7 ~i~v~tP~G~~~--~lp~GaT~~D~A~~Ih~~lg~~~--v~AkVNG~~v~L-----~~~L~~gd~VeIi 66 (78)
T 3hvz_A 7 EVFVFTPKGDVI--SLPIGSTVIDFAYAIHSAVGNRM--IGAKVDGRIVPI-----DYKVKTGEIIDVL 66 (78)
T ss_dssp EEEEECTTSCEE--EEETTCBHHHHHHHHCHHHHHTE--EEEEETTEEECT-----TCBCCTTCBEEEE
T ss_pred eEEEECCCCCEE--EecCCCCHHHHHHHhhhhhhcce--EEEEECCEEcCC-----CcccCCCCEEEEE
Confidence 689999999776 46778899999888865543211 112346665433 3445555555543
No 358
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=24.72 E-value=91 Score=23.58 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=26.5
Q ss_pred eEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCC
Q 012749 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP 37 (457)
Q Consensus 2 ~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip 37 (457)
+|.|.+.+|+..++++.+.+|+.+.-.+ .|++
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~~----~gi~ 33 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALRD----AGID 33 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHHH----TTCT
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHHH----cCCC
Confidence 5888999999999999999999986543 4555
No 359
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=24.00 E-value=1e+02 Score=23.84 Aligned_cols=58 Identities=16% Similarity=0.192 Sum_probs=38.4
Q ss_pred EEEecCCchHHHHHHHHhhhcCCCCCCeEEEE-cCeecCCCCccccc---CCCCCCEEEEEE
Q 012749 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADY---NIQKESTLHLVL 451 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~-~g~~L~d~~tL~~~---~i~~~~~i~l~~ 451 (457)
-+-|+.+.||+++...|..+.++++++-..+| ++.....+.++++. .-..+.-|+++.
T Consensus 47 KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Y 108 (110)
T 2r2q_A 47 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAY 108 (110)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred EEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHHHHHcCCCCCEEEEEE
Confidence 35678899999999999999999988754444 55544455565543 212234465543
No 360
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=23.61 E-value=69 Score=24.62 Aligned_cols=69 Identities=25% Similarity=0.390 Sum_probs=51.6
Q ss_pred eeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCC--CeEEEeCC---cccCCCccccccccCCCCeEEEE
Q 012749 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD--QQRLIFAG---KQLEDGRTLADYNIQKESTLHLV 298 (457)
Q Consensus 229 ~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~--~q~L~~~g---~~L~d~~tl~~~~i~~~~tl~l~ 298 (457)
..|+|...+ ...++.|....-|+.|..++-++..++-+ .+.|-.-. +.+.-..||..|||+....+++-
T Consensus 27 L~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ft 100 (112)
T 2lgx_A 27 LSVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFT 100 (112)
T ss_dssp EECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBB
T ss_pred EEEEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceec
Confidence 445555544 67778888888999999999988776443 56666533 34788999999999998887654
No 361
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=23.37 E-value=75 Score=23.38 Aligned_cols=34 Identities=9% Similarity=0.239 Sum_probs=30.2
Q ss_pred CCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEE
Q 012749 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 423 (457)
Q Consensus 390 g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l 423 (457)
.+++++.|++..|=.++|+.++..+++.+..-.-
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT 55 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNT 55 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCceEEEe
Confidence 4589999999999999999999999998876653
No 362
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=23.20 E-value=1.4e+02 Score=26.93 Aligned_cols=43 Identities=14% Similarity=0.144 Sum_probs=35.2
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEee
Q 012749 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45 (457)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~ 45 (457)
|-|...+|.+.++.|+++.|+.+|-..+.++.+++.+...-++
T Consensus 37 v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~~~l~ 79 (291)
T 3tca_A 37 VKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVDWCLY 79 (291)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTTEEEE
T ss_pred EEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCCeEEE
Confidence 4455678999999999999999999999999998776544444
No 363
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=22.92 E-value=1.5e+02 Score=21.23 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=35.0
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHhhhhCCCCccceEee
Q 012749 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45 (457)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~ 45 (457)
|-+-.+|++...++|.|+.|+.+.=.|+-++-|+.++. .-.|
T Consensus 4 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~-C~V~ 45 (77)
T 1c1y_B 4 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPEC-CAVF 45 (77)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGG-EEEE
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCCHHH-eEEE
Confidence 34556899999999999999999999999999997764 4445
No 364
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=22.87 E-value=1.2e+02 Score=23.84 Aligned_cols=58 Identities=16% Similarity=0.212 Sum_probs=38.7
Q ss_pred EEEecCCchHHHHHHHHhhhcCCCCCCeEEEE-cCeecCCCCcccc---cCCCCCCEEEEEE
Q 012749 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLAD---YNIQKESTLHLVL 451 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~-~g~~L~d~~tL~~---~~i~~~~~i~l~~ 451 (457)
-+-|+.+.||+++...|..+.++++++-..+| ++.....+.++++ +.-.++.-|++..
T Consensus 50 KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Y 111 (118)
T 3rui_B 50 KYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTY 111 (118)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred eEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEE
Confidence 35599999999999999999999987755555 6543444555443 2223344465554
No 365
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=22.74 E-value=2.3e+02 Score=20.68 Aligned_cols=59 Identities=15% Similarity=0.205 Sum_probs=47.2
Q ss_pred EEEEEcCCCCHHHHHHHHhhh-hCCC----CCCcEEEecCcc--cCCCCcccccccccCCcceEEE
Q 012749 89 ITLEVESSDTIDNVKAKIQDK-EGIP----PDQQRLIFAGKQ--LEDGRTLADYNIQKESTLHLVL 147 (457)
Q Consensus 89 ~~l~v~~~~tV~~lK~~i~~~-~gip----~~~q~L~~~g~~--L~d~~tl~~y~i~~~s~i~l~~ 147 (457)
..+.|+..+|+.++=++++.. .|.. |.-.++..+|.. |..+.|+++-||..-..|.+..
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 467799999999999999864 3532 235678899988 9999999999999888776643
No 366
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=22.47 E-value=2.6e+02 Score=21.20 Aligned_cols=68 Identities=13% Similarity=0.184 Sum_probs=42.3
Q ss_pred eeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCC--CeEEE--eCCcccCCCccccccccCCCCeEEEEEee
Q 012749 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD--QQRLI--FAGKQLEDGRTLADYNIQKESTLHLVLRL 301 (457)
Q Consensus 229 ~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~--~q~L~--~~g~~L~d~~tl~~~~i~~~~tl~l~~~~ 301 (457)
.++.|...+.++ ..-|-++ +.++|+.+.+++++++.. .-.|+ ..|-.++|..-+... +..|+.+++..
T Consensus 19 kPfkV~~~~~r~-k~GV~A~-SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tL---p~nT~lmvL~~ 90 (100)
T 1f2r_I 19 KPCLLRRNHSRD-QHGVAAS-SLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCL---PSNTKFVALAC 90 (100)
T ss_dssp EEEEEEETTEEE-EEEEEES-SHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSS---CSCCEEEEECS
T ss_pred CCEEEeeCCCcc-EEeEEcC-CHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcC---CCCCEEEEEcC
Confidence 455566444444 6666655 899999999999999764 24444 367777655443332 24565555543
No 367
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=22.07 E-value=1.6e+02 Score=22.71 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=32.5
Q ss_pred EEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCccc-CCCcccc
Q 012749 242 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLA 285 (457)
Q Consensus 242 ~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L-~d~~tl~ 285 (457)
.+-|..+.||+++...|..+.++++++-.++|.+..+ ..+.++.
T Consensus 47 KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~ 91 (110)
T 2r2q_A 47 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMG 91 (110)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHH
T ss_pred EEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHH
Confidence 4677788999999999999999999886666644434 3344443
No 368
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=21.74 E-value=93 Score=23.29 Aligned_cols=41 Identities=27% Similarity=0.334 Sum_probs=33.6
Q ss_pred CCcEEEEEeecCccHHHHHHHhhcccCCCCCCc-eEEecCee
Q 012749 313 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQ 353 (457)
Q Consensus 313 ~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q-~l~~~g~~ 353 (457)
..+++++.|++.+|=.++|+.++..+++.+..- .+...|+.
T Consensus 26 ~~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~ 67 (93)
T 3r8s_T 26 KSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKV 67 (93)
T ss_dssp TTSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCB
T ss_pred hCCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCce
Confidence 347899999999999999999999999999853 34455543
No 369
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=21.62 E-value=1.4e+02 Score=22.20 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=29.7
Q ss_pred EEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCc
Q 012749 242 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 276 (457)
Q Consensus 242 ~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~ 276 (457)
.+.|.++.||+.+..-|.++..+++++-.++|-+.
T Consensus 23 KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn 57 (91)
T 4gdk_A 23 KWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQ 57 (91)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETT
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECC
Confidence 47788999999999999999999999877766443
No 370
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=21.60 E-value=1.8e+02 Score=23.19 Aligned_cols=60 Identities=10% Similarity=0.191 Sum_probs=41.5
Q ss_pred EEeecCCchHHHHHHHHhhhhCCCCCceEEE-ECCeec-ccCcccccc---CcCcCcEEEEEEEe
Q 012749 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQL-EDGRTLADY---NIQKESTLHLVLRL 225 (457)
Q Consensus 166 ~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~-~~g~~L-~d~~tL~~y---~I~~~~~i~l~~~~ 225 (457)
.+-|+.+.||+++...|+++..+++++--++ |.+..+ ..+.++++. .-.++..+++....
T Consensus 56 KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~ 120 (130)
T 2zjd_A 56 KFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYAS 120 (130)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTTSCEEEEEEE
T ss_pred EEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHHHHHhCCCCCEEEEEEeC
Confidence 4578999999999999999999998776555 766655 344455442 22345566665543
No 371
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=21.46 E-value=91 Score=23.44 Aligned_cols=33 Identities=21% Similarity=0.177 Sum_probs=29.5
Q ss_pred CCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeE
Q 012749 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 422 (457)
Q Consensus 389 ~g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~ 422 (457)
+++ +++.|++..|=.++|+.|+..+++.+..-.
T Consensus 22 ~n~-y~F~V~~~anK~eIK~aVE~lf~VkV~~VN 54 (95)
T 2zjr_Q 22 RGV-YSFWVSPKATKTEIKDAIQQAFGVRVIGIS 54 (95)
T ss_dssp TTC-CEEEECSSCTHHHHHHHHHHHHCCCCSEEE
T ss_pred CCE-EEEEEcCCCCHHHHHHHHHHHhCCCceEEE
Confidence 344 999999999999999999999999987765
No 372
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=21.22 E-value=1.6e+02 Score=29.62 Aligned_cols=45 Identities=18% Similarity=0.117 Sum_probs=37.0
Q ss_pred eeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCC-C-CeEEEe
Q 012749 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-D-QQRLIF 273 (457)
Q Consensus 229 ~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~-~-~q~L~~ 273 (457)
+.+.|..++|....+.+++..|+++|-..++++.|+.. . ..-|..
T Consensus 217 ~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred cceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 45667778999999999999999999999999999974 3 344544
No 373
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=20.60 E-value=1e+02 Score=23.00 Aligned_cols=33 Identities=12% Similarity=0.064 Sum_probs=29.9
Q ss_pred CCEEEEEecCCchHHHHHHHHhhhcCCCCCCeE
Q 012749 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 422 (457)
Q Consensus 390 g~~~~l~v~~~~tV~~lK~~i~~~~~ip~~~q~ 422 (457)
.+++++.|++..+=.++|+.|+..+++.+..-.
T Consensus 21 ~n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~Vn 53 (92)
T 3tve_T 21 EGKYTFWVHPKATKTEIKNAVETAFKVKVVKVN 53 (92)
T ss_dssp TTEEEEEECTTCCHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceeeee
Confidence 368999999999999999999999999987764
No 374
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=20.57 E-value=1.3e+02 Score=23.54 Aligned_cols=43 Identities=9% Similarity=0.219 Sum_probs=32.7
Q ss_pred EEEeecCccHHHHHHHHhhhcCCCCCCeEEEe-CCcccCCCccc
Q 012749 242 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTL 284 (457)
Q Consensus 242 ~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~-~g~~L~d~~tl 284 (457)
.+-|.++.||+++...|..+..+++++-.++| ++.....+.++
T Consensus 51 KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m 94 (119)
T 3h9d_A 51 KFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQM 94 (119)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBH
T ss_pred eEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchH
Confidence 35788999999999999999999999866665 55433444444
No 375
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=20.46 E-value=1.2e+02 Score=23.63 Aligned_cols=59 Identities=14% Similarity=0.197 Sum_probs=39.8
Q ss_pred EEEecCCchHHHHHHHHhhhcCCCCCCeEEEE-cCeecCCCCccccc---CCCCCCEEEEEEe
Q 012749 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADY---NIQKESTLHLVLR 452 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~~ip~~~q~l~~-~g~~L~d~~tL~~~---~i~~~~~i~l~~r 452 (457)
-+-|+.+.||+++...|..+.++++++-..+| ++.....+.++++. .-..+.-|+++..
T Consensus 48 KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys 110 (117)
T 1eo6_A 48 KYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYS 110 (117)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEEEEEEe
Confidence 34688899999999999999999988754445 55544455555543 2233445776654
No 376
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=20.26 E-value=1.6e+02 Score=28.33 Aligned_cols=51 Identities=12% Similarity=0.073 Sum_probs=38.8
Q ss_pred CCCCEEEEEecCCchHHHHHHHHh--hhcCC---CCCCeEEEEc----C--eecCCCCcccc
Q 012749 388 LTGKTITLEVESSDTIDNVKAKIQ--DKEGI---PPDQQRLIFA----G--KQLEDGRTLAD 438 (457)
Q Consensus 388 ~~g~~~~l~v~~~~tV~~lK~~i~--~~~~i---p~~~q~l~~~----g--~~L~d~~tL~~ 438 (457)
++|....+.+++++||.++-..|+ .+.|+ .++.+-|.+. | +-|+++.+|.+
T Consensus 35 ~~~~~k~v~~d~~ttV~dVi~~i~~~~kiG~~i~~~~~FgL~~~~~~~~~~~wL~~~~~l~~ 96 (392)
T 4eku_A 35 PGKNFKLVKCTVQTEIREIITSILLSGRIGPNIRLAECYGLRLKHMKSDEIHWLHPQMTVGE 96 (392)
T ss_dssp GGGEEEEEEEETTCBHHHHHHHHHHTTTTCSSCCCGGGEEEEEEESSSCCEEEECTTSBHHH
T ss_pred CCCCeEEEEeCCCCcHHHHHHHHHHHhhcCCCcCccceEEEEEEECCCCceEECCCCCcHHH
Confidence 678888999999999999999999 56775 4456666542 2 45677777766
No 377
>2lte_A Specialized acyl carrier protein; APO protein, transferase; NMR {Pseudomonas aeruginosa}
Probab=25.30 E-value=22 Score=27.17 Aligned_cols=73 Identities=15% Similarity=0.265 Sum_probs=47.6
Q ss_pred cHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEEEeecCceeeEEEecCCcEEEEEeecCccHHH
Q 012749 250 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDN 329 (457)
Q Consensus 250 tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~~~~~~~~i~i~~~~g~~~~l~v~~~~Tv~~ 329 (457)
....|++.|.+..++|++ .+.++.+|.++|+-.=+.+.++......+.|.+.. -.+....||++
T Consensus 27 i~~~l~~ila~~l~i~~~---------~I~~d~~l~dLGlDSL~~veL~~~lE~~fgi~i~~-------~~l~~~~TV~~ 90 (103)
T 2lte_A 27 MEDHLLTVLSVASGVPKE---------EISRDSRMEDLAFDSLVVSELSLKLRKEFGVTGVD-------DELDLLETVDE 90 (103)
Confidence 566788888888888765 35666677888886656666665554444443321 12356778999
Q ss_pred HHHHhhccc
Q 012749 330 VKAKIQDKE 338 (457)
Q Consensus 330 lK~~I~~~~ 338 (457)
|-..|..+.
T Consensus 91 l~~~I~~~~ 99 (103)
T 2lte_A 91 LFQLVEKHR 99 (103)
Confidence 888877653
Done!