Query 012750
Match_columns 457
No_of_seqs 260 out of 1796
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 05:55:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012750.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012750hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02477 glutamate dehydrogena 100.0 5E-130 1E-134 1014.1 49.2 410 47-456 1-410 (410)
2 COG0334 GdhA Glutamate dehydro 100.0 4E-128 8E-133 985.3 45.4 409 48-456 2-411 (411)
3 PRK14030 glutamate dehydrogena 100.0 4E-127 1E-131 996.4 49.0 412 45-456 16-445 (445)
4 PRK09414 glutamate dehydrogena 100.0 8E-124 2E-128 974.8 48.2 412 45-456 20-445 (445)
5 PRK14031 glutamate dehydrogena 100.0 5E-120 1E-124 944.3 46.4 412 45-456 16-444 (444)
6 PTZ00079 NADP-specific glutama 100.0 3E-119 6E-124 936.7 48.5 411 46-456 28-454 (454)
7 KOG2250 Glutamate/leucine/phen 100.0 7E-103 1E-107 803.7 37.7 387 69-455 66-483 (514)
8 PTZ00324 glutamate dehydrogena 100.0 1E-86 2.2E-91 736.9 38.6 404 21-444 419-912 (1002)
9 cd05313 NAD_bind_2_Glu_DH NAD( 100.0 8.2E-72 1.8E-76 546.4 26.5 241 215-455 1-254 (254)
10 PF00208 ELFV_dehydrog: Glutam 100.0 2.4E-64 5.3E-69 492.8 18.9 233 222-454 1-244 (244)
11 cd01076 NAD_bind_1_Glu_DH NAD( 100.0 3.3E-61 7.1E-66 466.3 25.2 226 222-447 1-226 (227)
12 cd05211 NAD_bind_Glu_Leu_Phe_V 100.0 5.2E-60 1.1E-64 455.1 23.5 217 230-447 1-217 (217)
13 PF02812 ELFV_dehydrog_N: Glu/ 100.0 4.1E-47 8.8E-52 338.5 13.9 130 77-206 1-130 (131)
14 cd01075 NAD_bind_Leu_Phe_Val_D 100.0 2.4E-43 5.2E-48 335.4 22.3 195 228-447 2-199 (200)
15 PF05088 Bac_GDH: Bacterial NA 100.0 2.3E-39 4.9E-44 374.8 22.7 420 12-455 643-1169(1528)
16 COG2902 NAD-specific glutamate 100.0 1.7E-39 3.6E-44 363.0 19.4 391 12-427 705-1197(1592)
17 smart00839 ELFV_dehydrog Gluta 100.0 3.6E-30 7.8E-35 220.5 9.8 100 328-430 3-102 (102)
18 PRK08374 homoserine dehydrogen 99.3 5.1E-12 1.1E-16 129.6 7.4 168 253-432 3-205 (336)
19 PRK06392 homoserine dehydrogen 99.1 1.7E-10 3.8E-15 117.9 7.4 175 253-432 1-199 (326)
20 PRK06270 homoserine dehydrogen 98.7 4.1E-08 9E-13 101.0 9.0 177 253-432 3-209 (341)
21 cd05191 NAD_bind_amino_acid_DH 98.6 1.9E-07 4.2E-12 77.1 9.7 84 230-357 1-86 (86)
22 PLN02700 homoserine dehydrogen 98.2 2.6E-06 5.7E-11 88.8 8.3 50 252-301 3-65 (377)
23 PRK06813 homoserine dehydrogen 98.0 1.8E-05 3.9E-10 81.8 9.6 176 253-432 3-206 (346)
24 PF00670 AdoHcyase_NAD: S-aden 97.9 7.7E-05 1.7E-09 69.3 9.0 110 244-375 15-127 (162)
25 cd01065 NAD_bind_Shikimate_DH 97.8 0.00056 1.2E-08 61.4 13.8 130 237-379 4-138 (155)
26 COG0460 ThrA Homoserine dehydr 97.7 0.00014 3E-09 74.7 9.6 167 251-432 2-197 (333)
27 TIGR02853 spore_dpaA dipicolin 97.7 0.00035 7.5E-09 70.5 11.5 126 228-377 130-259 (287)
28 PRK09436 thrA bifunctional asp 97.6 0.00014 3.1E-09 83.0 8.2 180 245-432 458-665 (819)
29 PRK14175 bifunctional 5,10-met 97.5 0.0029 6.2E-08 64.0 15.2 95 227-360 137-233 (286)
30 PRK09466 metL bifunctional asp 97.4 0.00041 8.8E-09 79.2 8.4 174 249-432 455-659 (810)
31 PRK08306 dipicolinate synthase 97.3 0.0011 2.5E-08 67.0 10.0 126 228-377 131-260 (296)
32 COG0373 HemA Glutamyl-tRNA red 97.3 0.0067 1.4E-07 64.2 15.9 183 234-450 160-358 (414)
33 PRK09599 6-phosphogluconate de 97.3 0.003 6.5E-08 63.7 12.6 114 253-387 1-124 (301)
34 PRK05476 S-adenosyl-L-homocyst 97.2 0.00096 2.1E-08 70.9 8.2 107 228-357 191-299 (425)
35 PTZ00075 Adenosylhomocysteinas 97.2 0.0013 2.9E-08 70.5 8.7 108 232-359 233-343 (476)
36 PRK15438 erythronate-4-phospha 97.0 0.03 6.6E-07 58.8 17.2 131 230-384 94-237 (378)
37 cd05311 NAD_bind_2_malic_enz N 97.0 0.0054 1.2E-07 59.8 11.0 135 231-374 4-144 (226)
38 cd01080 NAD_bind_m-THF_DH_Cycl 97.0 0.0079 1.7E-07 56.2 11.4 96 226-360 22-119 (168)
39 PF02826 2-Hacid_dh_C: D-isome 97.0 0.0019 4.2E-08 60.3 7.1 116 246-381 30-154 (178)
40 PF03446 NAD_binding_2: NAD bi 96.9 0.0022 4.7E-08 59.0 6.5 109 253-381 2-120 (163)
41 PF01488 Shikimate_DH: Shikima 96.8 0.0023 5E-08 57.2 6.0 103 248-364 8-117 (135)
42 cd00401 AdoHcyase S-adenosyl-L 96.8 0.0037 7.9E-08 66.3 8.0 102 230-354 183-287 (413)
43 PRK13243 glyoxylate reductase; 96.7 0.015 3.2E-07 60.0 11.8 108 247-375 145-260 (333)
44 PRK09310 aroDE bifunctional 3- 96.7 0.021 4.5E-07 61.7 13.4 153 231-422 315-472 (477)
45 PRK14194 bifunctional 5,10-met 96.7 0.021 4.6E-07 58.2 12.5 53 228-285 139-192 (301)
46 PRK14189 bifunctional 5,10-met 96.7 0.021 4.5E-07 57.8 12.1 53 227-284 137-190 (285)
47 PRK00257 erythronate-4-phospha 96.7 0.015 3.2E-07 61.2 11.3 48 236-284 100-147 (381)
48 PRK10792 bifunctional 5,10-met 96.7 0.024 5.1E-07 57.4 12.3 53 228-285 139-192 (285)
49 PLN02494 adenosylhomocysteinas 96.6 0.014 3.1E-07 62.7 11.1 113 230-365 235-351 (477)
50 PRK00676 hemA glutamyl-tRNA re 96.6 0.03 6.5E-07 58.0 12.8 102 235-360 158-264 (338)
51 PRK14179 bifunctional 5,10-met 96.6 0.029 6.4E-07 56.7 12.3 53 227-284 137-190 (284)
52 PLN03129 NADP-dependent malic 96.5 0.065 1.4E-06 58.9 15.2 178 159-361 244-439 (581)
53 PRK14191 bifunctional 5,10-met 96.5 0.043 9.3E-07 55.5 12.8 53 227-284 136-189 (285)
54 PRK06932 glycerate dehydrogena 96.4 0.066 1.4E-06 54.8 14.2 109 248-381 143-260 (314)
55 PRK12861 malic enzyme; Reviewe 96.4 0.04 8.7E-07 62.6 13.5 178 164-374 119-305 (764)
56 PF03447 NAD_binding_3: Homose 96.4 0.0021 4.5E-08 55.7 2.7 90 259-388 1-95 (117)
57 PRK14188 bifunctional 5,10-met 96.4 0.05 1.1E-06 55.4 12.8 53 227-284 137-190 (296)
58 PRK07574 formate dehydrogenase 96.4 0.044 9.4E-07 57.8 12.7 114 248-381 188-311 (385)
59 PRK08410 2-hydroxyacid dehydro 96.4 0.054 1.2E-06 55.3 13.0 111 248-382 141-259 (311)
60 TIGR00936 ahcY adenosylhomocys 96.3 0.01 2.2E-07 62.8 7.6 119 230-371 176-299 (406)
61 PLN02928 oxidoreductase family 96.3 0.1 2.3E-06 54.1 14.8 125 247-381 154-289 (347)
62 COG0281 SfcA Malic enzyme [Ene 96.3 0.028 6E-07 59.4 10.3 124 229-365 176-306 (432)
63 COG0111 SerA Phosphoglycerate 96.2 0.016 3.4E-07 59.7 8.3 108 247-375 137-253 (324)
64 TIGR00872 gnd_rel 6-phosphoglu 96.2 0.015 3.2E-07 58.7 8.0 107 253-378 1-116 (298)
65 TIGR00507 aroE shikimate 5-deh 96.2 0.11 2.5E-06 51.6 14.0 131 231-379 100-236 (270)
66 COG0499 SAM1 S-adenosylhomocys 96.2 0.013 2.9E-07 60.6 7.2 104 228-354 188-292 (420)
67 PLN03139 formate dehydrogenase 96.1 0.07 1.5E-06 56.3 12.7 114 247-380 194-317 (386)
68 PTZ00142 6-phosphogluconate de 96.1 0.013 2.8E-07 63.2 7.4 171 253-441 2-218 (470)
69 PRK15409 bifunctional glyoxyla 96.1 0.051 1.1E-06 55.9 11.3 113 247-380 140-262 (323)
70 PF01113 DapB_N: Dihydrodipico 96.0 0.0024 5.2E-08 56.4 1.0 112 253-378 1-122 (124)
71 cd05312 NAD_bind_1_malic_enz N 96.0 0.042 9.1E-07 55.4 10.0 122 231-361 4-143 (279)
72 PRK00048 dihydrodipicolinate r 96.0 0.023 5.1E-07 56.3 8.0 109 253-382 2-119 (257)
73 PRK13529 malate dehydrogenase; 96.0 0.19 4.2E-06 55.2 15.5 183 159-361 219-420 (563)
74 PRK14178 bifunctional 5,10-met 96.0 0.089 1.9E-06 53.2 12.1 53 227-284 131-184 (279)
75 PRK06436 glycerate dehydrogena 96.0 0.058 1.3E-06 55.0 10.8 103 248-374 118-228 (303)
76 PRK13302 putative L-aspartate 95.9 0.022 4.7E-07 57.0 7.4 112 250-378 4-122 (271)
77 PF03807 F420_oxidored: NADP o 95.9 0.01 2.2E-07 49.1 4.2 90 254-359 1-96 (96)
78 PRK00045 hemA glutamyl-tRNA re 95.9 0.26 5.7E-06 52.3 15.9 99 249-364 179-288 (423)
79 PRK06487 glycerate dehydrogena 95.9 0.062 1.3E-06 55.0 10.7 108 248-381 144-260 (317)
80 PRK13940 glutamyl-tRNA reducta 95.9 0.32 7E-06 51.7 16.4 106 242-364 171-281 (414)
81 PRK12549 shikimate 5-dehydroge 95.8 0.14 3E-06 51.6 12.7 133 231-379 110-249 (284)
82 PRK14169 bifunctional 5,10-met 95.8 0.13 2.9E-06 52.0 12.5 54 227-285 135-189 (282)
83 TIGR01327 PGDH D-3-phosphoglyc 95.8 0.17 3.7E-06 55.3 14.2 156 247-424 133-301 (525)
84 PLN02516 methylenetetrahydrofo 95.8 0.12 2.7E-06 52.6 12.1 54 227-285 146-200 (299)
85 TIGR01035 hemA glutamyl-tRNA r 95.7 0.3 6.6E-06 51.8 15.6 99 249-365 177-286 (417)
86 cd05213 NAD_bind_Glutamyl_tRNA 95.7 0.053 1.2E-06 55.2 9.5 108 239-364 166-281 (311)
87 PRK14177 bifunctional 5,10-met 95.7 0.16 3.5E-06 51.4 12.7 54 227-285 138-192 (284)
88 PRK07232 bifunctional malic en 95.7 0.072 1.6E-06 60.5 11.1 120 229-361 162-287 (752)
89 PRK14190 bifunctional 5,10-met 95.7 0.16 3.5E-06 51.4 12.5 52 228-284 138-190 (284)
90 PRK00258 aroE shikimate 5-dehy 95.7 0.22 4.8E-06 49.8 13.5 130 231-378 105-242 (278)
91 PTZ00317 NADP-dependent malic 95.7 0.32 6.9E-06 53.4 15.5 180 159-361 221-419 (559)
92 PRK14173 bifunctional 5,10-met 95.7 0.16 3.5E-06 51.5 12.5 54 227-285 134-188 (287)
93 PRK14182 bifunctional 5,10-met 95.7 0.19 4.1E-06 50.9 12.8 53 228-285 137-190 (282)
94 PRK14186 bifunctional 5,10-met 95.6 0.17 3.7E-06 51.5 12.6 53 228-285 138-191 (297)
95 TIGR00873 gnd 6-phosphoglucona 95.6 0.025 5.4E-07 61.0 6.8 108 255-378 2-121 (467)
96 PRK14172 bifunctional 5,10-met 95.6 0.18 3.9E-06 50.9 12.4 54 227-285 137-191 (278)
97 PRK13581 D-3-phosphoglycerate 95.6 0.17 3.7E-06 55.4 13.2 108 247-375 135-250 (526)
98 PLN00203 glutamyl-tRNA reducta 95.5 0.52 1.1E-05 51.7 16.7 118 234-365 246-378 (519)
99 cd05212 NAD_bind_m-THF_DH_Cycl 95.5 0.21 4.5E-06 45.5 11.4 53 228-285 8-61 (140)
100 cd01078 NAD_bind_H4MPT_DH NADP 95.5 0.052 1.1E-06 51.0 7.8 124 230-365 6-138 (194)
101 PF10727 Rossmann-like: Rossma 95.5 0.012 2.5E-07 52.7 3.2 108 251-376 9-122 (127)
102 PRK14176 bifunctional 5,10-met 95.4 0.046 1E-06 55.4 7.7 52 228-284 144-196 (287)
103 PRK14166 bifunctional 5,10-met 95.4 0.22 4.8E-06 50.4 12.4 82 228-346 137-220 (282)
104 PRK14170 bifunctional 5,10-met 95.4 0.22 4.8E-06 50.4 12.3 83 228-347 137-221 (284)
105 PRK14192 bifunctional 5,10-met 95.4 0.12 2.6E-06 52.3 10.4 52 228-284 139-191 (283)
106 PRK14171 bifunctional 5,10-met 95.4 0.19 4.1E-06 51.1 11.8 54 227-285 138-192 (288)
107 COG1023 Gnd Predicted 6-phosph 95.3 0.044 9.5E-07 54.2 6.8 166 254-440 2-208 (300)
108 PRK15461 NADH-dependent gamma- 95.3 0.063 1.4E-06 54.2 8.2 104 254-377 3-117 (296)
109 PRK13304 L-aspartate dehydroge 95.3 0.038 8.2E-07 55.1 6.5 105 253-376 2-116 (265)
110 PLN02350 phosphogluconate dehy 95.3 0.044 9.5E-07 59.5 7.4 174 253-440 7-223 (493)
111 PLN02616 tetrahydrofolate dehy 95.3 0.26 5.7E-06 51.4 12.6 54 227-285 210-264 (364)
112 PRK11790 D-3-phosphoglycerate 95.3 0.3 6.4E-06 51.9 13.4 105 247-375 146-259 (409)
113 cd00762 NAD_bind_malic_enz NAD 95.3 0.071 1.5E-06 53.1 8.2 121 231-361 4-144 (254)
114 PLN02897 tetrahydrofolate dehy 95.2 0.29 6.2E-06 50.8 12.8 53 227-284 193-246 (345)
115 PRK12862 malic enzyme; Reviewe 95.2 0.12 2.7E-06 58.9 11.0 120 229-361 170-295 (763)
116 PRK12490 6-phosphogluconate de 95.2 0.058 1.3E-06 54.4 7.6 169 254-441 2-209 (299)
117 PRK11064 wecC UDP-N-acetyl-D-m 95.2 0.59 1.3E-05 49.6 15.3 31 253-284 4-34 (415)
118 PRK14167 bifunctional 5,10-met 95.1 0.28 6.1E-06 50.0 12.1 53 228-285 137-194 (297)
119 TIGR01505 tartro_sem_red 2-hyd 95.0 0.083 1.8E-06 52.8 8.0 170 254-442 1-205 (291)
120 PRK14181 bifunctional 5,10-met 95.0 0.42 9.2E-06 48.5 12.9 53 228-285 133-190 (287)
121 PRK14193 bifunctional 5,10-met 95.0 0.36 7.9E-06 48.9 12.3 53 228-285 138-193 (284)
122 PF02882 THF_DHG_CYH_C: Tetrah 94.9 0.086 1.9E-06 49.0 7.1 54 227-285 15-69 (160)
123 TIGR01809 Shik-DH-AROM shikima 94.9 0.37 8E-06 48.5 12.2 130 231-378 106-252 (282)
124 PRK14184 bifunctional 5,10-met 94.9 0.37 8E-06 48.9 12.1 53 228-285 137-194 (286)
125 COG1052 LdhA Lactate dehydroge 94.9 0.091 2E-06 54.1 7.9 116 246-382 140-264 (324)
126 TIGR01532 E4PD_g-proteo D-eryt 94.9 0.25 5.3E-06 51.0 11.0 31 254-284 1-35 (325)
127 PF03949 Malic_M: Malic enzyme 94.8 0.066 1.4E-06 53.4 6.6 124 231-361 4-144 (255)
128 COG0057 GapA Glyceraldehyde-3- 94.8 0.15 3.3E-06 52.4 9.2 32 253-284 2-35 (335)
129 PRK06349 homoserine dehydrogen 94.8 0.055 1.2E-06 57.6 6.2 159 252-432 3-188 (426)
130 PLN02520 bifunctional 3-dehydr 94.6 0.48 1E-05 52.0 13.3 132 230-378 351-496 (529)
131 PRK09424 pntA NAD(P) transhydr 94.6 0.1 2.2E-06 56.9 7.8 35 250-285 163-197 (509)
132 PRK14185 bifunctional 5,10-met 94.5 0.56 1.2E-05 47.8 12.5 54 227-285 136-194 (293)
133 cd01079 NAD_bind_m-THF_DH NAD 94.5 0.14 3.1E-06 49.1 7.7 62 228-290 33-100 (197)
134 PRK15057 UDP-glucose 6-dehydro 94.5 0.58 1.3E-05 49.3 13.0 120 253-386 1-148 (388)
135 PRK11559 garR tartronate semia 94.5 0.16 3.5E-06 50.7 8.5 106 253-378 3-119 (296)
136 PRK13535 erythrose 4-phosphate 94.4 0.43 9.3E-06 49.5 11.6 32 253-284 2-37 (336)
137 PF03721 UDPG_MGDP_dh_N: UDP-g 94.2 0.13 2.8E-06 48.6 6.9 121 253-383 1-156 (185)
138 PRK08328 hypothetical protein; 94.2 0.039 8.5E-07 53.9 3.4 119 250-377 25-147 (231)
139 PRK08223 hypothetical protein; 94.1 0.13 2.7E-06 52.3 6.8 36 250-285 25-60 (287)
140 PRK14168 bifunctional 5,10-met 94.1 0.68 1.5E-05 47.3 12.0 53 228-285 141-198 (297)
141 COG2085 Predicted dinucleotide 94.1 0.14 3.1E-06 49.6 6.8 89 253-359 2-95 (211)
142 PF13241 NAD_binding_7: Putati 94.0 0.061 1.3E-06 45.8 3.8 37 248-284 3-39 (103)
143 COG0169 AroE Shikimate 5-dehyd 94.0 1.2 2.5E-05 45.3 13.6 131 232-377 108-246 (283)
144 PRK06476 pyrroline-5-carboxyla 94.0 0.53 1.2E-05 46.2 11.0 170 254-442 2-194 (258)
145 COG1748 LYS9 Saccharopine dehy 94.0 0.15 3.2E-06 53.9 7.3 125 253-395 2-137 (389)
146 COG0677 WecC UDP-N-acetyl-D-ma 94.0 0.44 9.6E-06 50.3 10.6 118 253-380 10-155 (436)
147 PRK14618 NAD(P)H-dependent gly 93.8 1.6 3.6E-05 44.3 14.4 111 252-375 4-130 (328)
148 PF00044 Gp_dh_N: Glyceraldehy 93.8 0.28 6.1E-06 45.2 7.9 32 254-285 2-34 (151)
149 PLN02272 glyceraldehyde-3-phos 93.8 0.73 1.6E-05 49.2 12.1 32 253-284 86-118 (421)
150 TIGR01546 GAPDH-II_archae glyc 93.8 0.13 2.8E-06 53.3 6.2 30 255-284 1-31 (333)
151 TIGR00518 alaDH alanine dehydr 93.8 0.24 5.1E-06 51.9 8.3 34 250-284 165-198 (370)
152 PRK14183 bifunctional 5,10-met 93.6 0.23 5E-06 50.2 7.7 54 227-285 136-190 (281)
153 PRK07680 late competence prote 93.5 0.16 3.4E-06 50.5 6.2 110 254-380 2-119 (273)
154 PLN02358 glyceraldehyde-3-phos 93.5 0.78 1.7E-05 47.6 11.5 34 253-286 6-40 (338)
155 COG2084 MmsB 3-hydroxyisobutyr 93.5 0.25 5.3E-06 50.2 7.6 109 253-379 1-119 (286)
156 PRK12749 quinate/shikimate deh 93.5 1.9 4E-05 43.7 14.0 135 231-379 107-255 (288)
157 COG0569 TrkA K+ transport syst 93.5 0.15 3.2E-06 49.7 5.8 112 253-380 1-122 (225)
158 TIGR01534 GAPDH-I glyceraldehy 93.3 0.92 2E-05 46.9 11.6 31 254-284 1-34 (327)
159 KOG2018 Predicted dinucleotide 93.3 0.29 6.4E-06 50.1 7.8 35 250-284 72-106 (430)
160 PRK15425 gapA glyceraldehyde-3 93.3 1 2.3E-05 46.6 11.9 32 253-284 3-35 (331)
161 PRK15469 ghrA bifunctional gly 93.2 0.15 3.2E-06 52.2 5.5 112 248-380 132-252 (312)
162 PRK12480 D-lactate dehydrogena 93.1 0.14 3.1E-06 52.8 5.4 105 248-375 142-254 (330)
163 cd00755 YgdL_like Family of ac 93.1 0.057 1.2E-06 53.0 2.4 36 250-285 9-44 (231)
164 PRK13301 putative L-aspartate 93.1 0.17 3.8E-06 50.7 5.7 85 253-356 3-93 (267)
165 KOG1370 S-adenosylhomocysteine 93.1 0.16 3.5E-06 51.8 5.5 119 250-388 212-352 (434)
166 PRK05690 molybdopterin biosynt 93.0 0.22 4.9E-06 49.1 6.5 36 250-285 30-65 (245)
167 smart00846 Gp_dh_N Glyceraldeh 93.0 1.6 3.5E-05 39.9 11.6 32 253-284 1-33 (149)
168 TIGR00561 pntA NAD(P) transhyd 92.9 0.55 1.2E-05 51.3 9.7 35 250-285 162-196 (511)
169 TIGR02355 moeB molybdopterin s 92.8 0.23 4.9E-06 48.9 6.2 36 250-285 22-57 (240)
170 TIGR00036 dapB dihydrodipicoli 92.8 0.35 7.6E-06 48.3 7.6 99 253-365 2-106 (266)
171 PRK14180 bifunctional 5,10-met 92.8 0.38 8.2E-06 48.8 7.7 53 227-284 137-190 (282)
172 TIGR02356 adenyl_thiF thiazole 92.8 0.13 2.7E-06 49.2 4.2 36 250-285 19-54 (202)
173 PF02737 3HCDH_N: 3-hydroxyacy 92.7 0.069 1.5E-06 50.2 2.2 30 254-284 1-30 (180)
174 PLN03096 glyceraldehyde-3-phos 92.6 1 2.2E-05 47.7 11.0 32 253-284 61-95 (395)
175 PRK15059 tartronate semialdehy 92.6 0.42 9E-06 48.3 7.8 165 254-441 2-204 (292)
176 PRK14187 bifunctional 5,10-met 92.5 0.34 7.4E-06 49.3 7.1 53 228-285 140-193 (294)
177 PRK06719 precorrin-2 dehydroge 92.5 0.17 3.6E-06 46.7 4.4 34 248-281 9-42 (157)
178 PRK14027 quinate/shikimate deh 92.4 3 6.4E-05 42.2 13.7 130 231-378 110-250 (283)
179 COG1712 Predicted dinucleotide 92.4 0.25 5.4E-06 48.6 5.6 73 253-342 1-75 (255)
180 PRK14851 hypothetical protein; 92.4 0.11 2.5E-06 58.5 3.7 120 250-379 41-166 (679)
181 PRK07340 ornithine cyclodeamin 92.4 1.4 3E-05 44.9 11.3 115 250-380 123-240 (304)
182 PRK12548 shikimate 5-dehydroge 92.3 2.6 5.7E-05 42.5 13.2 136 232-378 110-257 (289)
183 PRK03659 glutathione-regulated 92.3 0.57 1.2E-05 52.1 9.1 136 253-414 401-547 (601)
184 PF07991 IlvN: Acetohydroxy ac 92.1 0.21 4.6E-06 46.6 4.5 37 250-287 2-38 (165)
185 PRK07688 thiamine/molybdopteri 92.0 0.47 1E-05 49.2 7.5 36 250-285 22-57 (339)
186 PF01262 AlaDh_PNT_C: Alanine 92.0 0.21 4.5E-06 46.2 4.4 34 250-284 18-51 (168)
187 PRK06718 precorrin-2 dehydroge 91.9 0.21 4.5E-06 47.9 4.5 35 248-282 6-40 (202)
188 PLN02306 hydroxypyruvate reduc 91.8 0.23 5E-06 52.4 5.1 126 247-383 160-301 (386)
189 PRK07877 hypothetical protein; 91.7 0.36 7.8E-06 54.9 6.7 125 250-388 105-234 (722)
190 TIGR01692 HIBADH 3-hydroxyisob 91.6 0.47 1E-05 47.5 6.8 165 257-442 1-202 (288)
191 PRK13403 ketol-acid reductoiso 91.5 0.29 6.3E-06 50.6 5.2 32 250-281 14-45 (335)
192 PRK07729 glyceraldehyde-3-phos 91.4 2.2 4.7E-05 44.5 11.5 32 253-284 3-35 (343)
193 PRK08229 2-dehydropantoate 2-r 91.4 2.7 5.8E-05 42.8 12.2 29 253-281 3-31 (341)
194 TIGR03026 NDP-sugDHase nucleot 91.3 5.7 0.00012 41.9 14.9 31 253-284 1-31 (411)
195 COG5322 Predicted dehydrogenas 91.3 0.41 8.8E-06 48.3 5.8 52 230-281 145-197 (351)
196 PTZ00023 glyceraldehyde-3-phos 91.3 1.7 3.6E-05 45.2 10.6 96 253-357 3-122 (337)
197 PRK05479 ketol-acid reductoiso 91.3 0.29 6.2E-06 50.7 5.0 31 250-280 15-45 (330)
198 PRK07403 glyceraldehyde-3-phos 91.2 2 4.4E-05 44.6 11.1 32 253-284 2-36 (337)
199 TIGR01470 cysG_Nterm siroheme 91.2 0.28 6E-06 47.2 4.5 35 248-282 5-39 (205)
200 PRK06567 putative bifunctional 91.2 1.1 2.3E-05 52.6 9.9 34 250-284 381-414 (1028)
201 COG2344 AT-rich DNA-binding pr 91.2 0.41 8.8E-06 45.8 5.4 55 231-286 64-120 (211)
202 PRK14852 hypothetical protein; 91.1 0.61 1.3E-05 54.4 7.9 123 249-381 329-457 (989)
203 COG1648 CysG Siroheme synthase 91.1 0.48 1E-05 46.0 6.0 50 248-307 8-57 (210)
204 PRK12550 shikimate 5-dehydroge 91.0 5.1 0.00011 40.3 13.5 124 231-378 106-237 (272)
205 PRK06141 ornithine cyclodeamin 91.0 1.9 4.2E-05 44.0 10.7 116 250-379 123-242 (314)
206 COG0345 ProC Pyrroline-5-carbo 90.8 4.8 0.0001 40.5 13.0 115 253-386 2-125 (266)
207 COG1064 AdhP Zn-dependent alco 90.7 0.56 1.2E-05 48.7 6.4 34 251-284 166-199 (339)
208 PRK12491 pyrroline-5-carboxyla 90.6 6.2 0.00013 39.5 13.7 114 253-385 3-127 (272)
209 PLN02819 lysine-ketoglutarate 90.6 0.58 1.2E-05 55.2 7.2 114 251-381 568-704 (1042)
210 PRK08300 acetaldehyde dehydrog 90.6 0.69 1.5E-05 47.3 6.9 117 251-382 3-134 (302)
211 TIGR00465 ilvC ketol-acid redu 90.1 0.49 1.1E-05 48.5 5.5 34 250-283 1-34 (314)
212 KOG0069 Glyoxylate/hydroxypyru 90.1 0.84 1.8E-05 47.4 7.1 101 246-366 156-263 (336)
213 cd01483 E1_enzyme_family Super 90.1 0.3 6.4E-06 43.6 3.4 32 254-285 1-32 (143)
214 PRK07530 3-hydroxybutyryl-CoA 89.9 1.1 2.4E-05 44.8 7.7 31 253-284 5-35 (292)
215 COG0686 Ald Alanine dehydrogen 89.9 0.86 1.9E-05 46.9 6.8 44 250-304 166-209 (371)
216 PRK14982 acyl-ACP reductase; P 89.8 0.94 2E-05 47.1 7.3 132 230-391 133-271 (340)
217 PRK13303 L-aspartate dehydroge 89.8 0.71 1.5E-05 46.0 6.2 106 253-376 2-116 (265)
218 PF00070 Pyr_redox: Pyridine n 89.8 1.2 2.6E-05 35.7 6.4 42 254-298 1-42 (80)
219 PRK08605 D-lactate dehydrogena 89.8 0.42 9E-06 49.3 4.7 106 247-375 141-256 (332)
220 PRK05600 thiamine biosynthesis 89.8 0.55 1.2E-05 49.2 5.6 36 250-285 39-74 (370)
221 PRK05472 redox-sensing transcr 89.8 0.63 1.4E-05 44.7 5.6 53 232-285 65-119 (213)
222 TIGR01921 DAP-DH diaminopimela 89.7 0.55 1.2E-05 48.5 5.4 35 251-285 2-37 (324)
223 PRK04207 glyceraldehyde-3-phos 89.7 3 6.6E-05 43.2 11.0 33 253-285 2-35 (341)
224 PTZ00353 glycosomal glyceralde 89.6 3.2 6.8E-05 43.3 10.9 32 253-284 3-35 (342)
225 PRK08289 glyceraldehyde-3-phos 89.5 4.6 0.0001 43.7 12.3 37 250-286 125-166 (477)
226 KOG0409 Predicted dehydrogenas 89.5 0.66 1.4E-05 47.4 5.7 172 250-443 33-243 (327)
227 PRK03562 glutathione-regulated 89.4 1.4 3E-05 49.3 8.7 111 252-381 400-520 (621)
228 PRK08955 glyceraldehyde-3-phos 89.3 5.1 0.00011 41.6 12.1 32 253-284 3-35 (334)
229 PRK01438 murD UDP-N-acetylmura 89.2 0.63 1.4E-05 49.9 5.6 41 244-285 8-48 (480)
230 PLN02688 pyrroline-5-carboxyla 89.1 1.2 2.5E-05 43.8 7.1 31 253-284 1-36 (266)
231 PLN02858 fructose-bisphosphate 88.8 0.99 2.2E-05 55.0 7.4 170 252-441 324-532 (1378)
232 PRK08268 3-hydroxy-acyl-CoA de 88.5 0.43 9.3E-06 52.1 3.8 32 253-285 8-39 (507)
233 PRK10669 putative cation:proto 88.4 1.1 2.4E-05 49.1 7.0 105 253-376 418-531 (558)
234 PLN02712 arogenate dehydrogena 88.3 0.8 1.7E-05 51.7 5.9 39 245-284 362-400 (667)
235 TIGR02354 thiF_fam2 thiamine b 88.2 0.71 1.5E-05 44.2 4.7 36 250-285 19-54 (200)
236 TIGR02279 PaaC-3OHAcCoADH 3-hy 88.2 0.42 9.1E-06 52.1 3.6 32 253-285 6-37 (503)
237 PRK14174 bifunctional 5,10-met 88.2 1.4 2.9E-05 45.1 6.9 52 228-284 139-195 (295)
238 COG2130 Putative NADP-dependen 88.1 1.3 2.9E-05 45.4 6.7 109 230-357 133-250 (340)
239 KOG2380 Prephenate dehydrogena 88.1 0.58 1.2E-05 48.6 4.2 33 251-284 51-83 (480)
240 PRK07417 arogenate dehydrogena 88.1 1.8 4E-05 43.1 7.8 70 253-340 1-70 (279)
241 KOG0068 D-3-phosphoglycerate d 88.1 0.43 9.4E-06 49.4 3.3 35 246-280 140-174 (406)
242 PLN02237 glyceraldehyde-3-phos 87.8 4.5 9.7E-05 43.5 10.8 32 253-284 76-110 (442)
243 PRK02472 murD UDP-N-acetylmura 87.8 0.88 1.9E-05 48.1 5.6 36 249-285 2-37 (447)
244 COG0190 FolD 5,10-methylene-te 87.8 1.3 2.8E-05 44.9 6.4 53 228-285 136-189 (283)
245 PRK06046 alanine dehydrogenase 87.6 4.2 9.2E-05 41.7 10.3 115 251-380 128-246 (326)
246 PRK12475 thiamine/molybdopteri 87.6 0.74 1.6E-05 47.7 4.7 36 250-285 22-57 (338)
247 PRK04690 murD UDP-N-acetylmura 87.6 0.77 1.7E-05 49.4 5.1 35 250-285 6-40 (468)
248 COG1179 Dinucleotide-utilizing 87.5 0.5 1.1E-05 46.9 3.2 35 250-284 28-62 (263)
249 PF00899 ThiF: ThiF family; I 87.3 0.6 1.3E-05 41.3 3.4 34 252-285 2-35 (135)
250 PRK07819 3-hydroxybutyryl-CoA 87.2 0.5 1.1E-05 47.6 3.2 30 254-284 7-36 (286)
251 COG0059 IlvC Ketol-acid reduct 87.1 0.57 1.2E-05 47.9 3.5 54 250-304 16-73 (338)
252 PRK15116 sulfur acceptor prote 86.9 0.85 1.8E-05 45.9 4.6 36 250-285 28-63 (268)
253 PRK08293 3-hydroxybutyryl-CoA 86.9 0.67 1.4E-05 46.4 3.9 31 253-284 4-34 (287)
254 cd00757 ThiF_MoeB_HesA_family 86.7 0.93 2E-05 44.0 4.6 36 250-285 19-54 (228)
255 PRK08762 molybdopterin biosynt 86.7 1.1 2.4E-05 46.9 5.5 36 250-285 133-168 (376)
256 PRK06928 pyrroline-5-carboxyla 86.7 1.8 3.9E-05 43.3 6.8 115 253-384 2-126 (277)
257 PRK04148 hypothetical protein; 86.6 1.5 3.2E-05 39.8 5.5 34 250-285 15-48 (134)
258 PLN02858 fructose-bisphosphate 86.6 2.2 4.8E-05 52.1 8.6 172 251-442 3-213 (1378)
259 KOG0089 Methylenetetrahydrofol 86.4 0.72 1.6E-05 46.4 3.6 55 229-287 147-202 (309)
260 PRK14106 murD UDP-N-acetylmura 86.3 1.1 2.4E-05 47.4 5.3 36 249-285 2-37 (450)
261 KOG2336 Molybdopterin biosynth 86.1 0.82 1.8E-05 46.3 3.9 43 242-285 67-115 (422)
262 PRK05717 oxidoreductase; Valid 86.0 1.4 3.1E-05 42.4 5.5 36 248-284 6-42 (255)
263 KOG0455 Homoserine dehydrogena 85.7 1.7 3.8E-05 43.5 5.9 42 251-292 2-52 (364)
264 PF01210 NAD_Gly3P_dh_N: NAD-d 85.7 2.5 5.4E-05 38.6 6.7 30 254-284 1-30 (157)
265 PLN02256 arogenate dehydrogena 85.6 1.9 4.2E-05 43.9 6.5 34 249-282 33-66 (304)
266 KOG0022 Alcohol dehydrogenase, 85.4 1.2 2.6E-05 46.0 4.7 47 228-281 176-223 (375)
267 PF03435 Saccharop_dh: Sacchar 85.4 0.78 1.7E-05 47.7 3.6 112 255-385 1-127 (386)
268 PRK14619 NAD(P)H-dependent gly 85.0 1.4 2.9E-05 44.7 5.0 34 251-285 3-36 (308)
269 PRK08618 ornithine cyclodeamin 85.0 7.1 0.00015 40.0 10.3 116 251-381 126-246 (325)
270 PRK01710 murD UDP-N-acetylmura 84.8 1.3 2.9E-05 47.3 5.1 35 250-285 12-46 (458)
271 PRK05225 ketol-acid reductoiso 84.8 0.47 1E-05 51.1 1.6 30 250-279 34-63 (487)
272 PRK06153 hypothetical protein; 84.8 0.61 1.3E-05 49.3 2.4 36 250-285 174-209 (393)
273 PRK00066 ldh L-lactate dehydro 84.5 1.8 4E-05 44.3 5.8 34 251-285 5-40 (315)
274 PRK11880 pyrroline-5-carboxyla 84.2 3 6.5E-05 40.9 7.0 88 253-360 3-97 (267)
275 PRK15182 Vi polysaccharide bio 84.0 36 0.00077 36.5 15.4 32 251-284 5-36 (425)
276 COG1004 Ugd Predicted UDP-gluc 84.0 6.4 0.00014 41.8 9.5 123 253-386 1-157 (414)
277 PRK00094 gpsA NAD(P)H-dependen 84.0 3.1 6.6E-05 41.8 7.1 31 253-284 2-32 (325)
278 PTZ00082 L-lactate dehydrogena 83.8 1.3 2.8E-05 45.5 4.3 36 250-286 4-40 (321)
279 TIGR03628 arch_S11P archaeal r 83.7 5 0.00011 35.4 7.3 68 223-290 36-112 (114)
280 cd08239 THR_DH_like L-threonin 83.5 12 0.00025 37.7 11.0 32 250-281 162-194 (339)
281 PRK00141 murD UDP-N-acetylmura 83.5 1.7 3.7E-05 46.8 5.2 35 250-285 13-47 (473)
282 PRK08628 short chain dehydroge 83.2 1.9 4.1E-05 41.5 5.0 35 247-281 2-37 (258)
283 PRK08644 thiamine biosynthesis 83.1 1.6 3.4E-05 42.2 4.4 36 250-285 26-61 (212)
284 PF02254 TrkA_N: TrkA-N domain 83.1 1.9 4.2E-05 36.5 4.5 102 255-375 1-111 (116)
285 PRK02006 murD UDP-N-acetylmura 82.9 1.8 4E-05 46.7 5.3 36 250-286 5-40 (498)
286 PRK07523 gluconate 5-dehydroge 82.8 2.2 4.8E-05 40.9 5.3 35 249-284 7-42 (255)
287 PF01408 GFO_IDH_MocA: Oxidore 82.7 2.3 5E-05 36.1 4.8 69 253-337 1-72 (120)
288 PRK03369 murD UDP-N-acetylmura 82.7 1.9 4.2E-05 46.6 5.3 35 250-285 10-44 (488)
289 TIGR01832 kduD 2-deoxy-D-gluco 82.7 2.2 4.8E-05 40.6 5.2 34 249-282 2-36 (248)
290 PRK09607 rps11p 30S ribosomal 82.5 6 0.00013 35.8 7.5 68 223-290 43-119 (132)
291 cd01492 Aos1_SUMO Ubiquitin ac 82.5 1.5 3.2E-05 41.9 3.8 36 250-285 19-54 (197)
292 PRK06849 hypothetical protein; 82.4 1.8 3.8E-05 45.1 4.8 34 251-285 3-37 (389)
293 PRK04308 murD UDP-N-acetylmura 82.4 2.1 4.6E-05 45.4 5.5 35 250-285 3-37 (445)
294 PRK12828 short chain dehydroge 82.4 2.2 4.7E-05 40.0 5.0 34 249-282 4-38 (239)
295 PRK14620 NAD(P)H-dependent gly 82.3 3.7 8.1E-05 41.7 6.9 31 253-284 1-31 (326)
296 PRK07060 short chain dehydroge 82.1 2.5 5.5E-05 40.0 5.3 35 248-282 5-40 (245)
297 COG1250 FadB 3-hydroxyacyl-CoA 82.1 1.5 3.3E-05 45.0 4.0 33 252-285 3-35 (307)
298 PRK01390 murD UDP-N-acetylmura 82.1 2.1 4.6E-05 45.6 5.3 35 250-285 7-41 (460)
299 TIGR02371 ala_DH_arch alanine 82.0 11 0.00024 38.7 10.3 115 251-381 127-246 (325)
300 cd01485 E1-1_like Ubiquitin ac 82.0 1.7 3.7E-05 41.4 4.1 36 250-285 17-52 (198)
301 PRK12826 3-ketoacyl-(acyl-carr 81.9 2.4 5.2E-05 40.1 5.1 34 250-283 4-38 (251)
302 PLN02896 cinnamyl-alcohol dehy 81.8 2.6 5.6E-05 43.0 5.6 37 247-283 5-42 (353)
303 PRK09496 trkA potassium transp 81.8 3.3 7.2E-05 43.6 6.6 120 240-375 218-345 (453)
304 PRK07634 pyrroline-5-carboxyla 81.7 3.8 8.3E-05 39.5 6.5 91 251-360 3-102 (245)
305 TIGR01915 npdG NADPH-dependent 81.5 2.3 5E-05 40.9 4.8 97 253-361 1-105 (219)
306 PRK06138 short chain dehydroge 81.4 2.6 5.6E-05 40.1 5.1 34 249-282 2-36 (252)
307 PRK07231 fabG 3-ketoacyl-(acyl 81.1 2.9 6.2E-05 39.7 5.3 34 249-282 2-36 (251)
308 cd08230 glucose_DH Glucose deh 81.0 4.4 9.5E-05 41.3 7.0 33 250-282 171-203 (355)
309 PLN02206 UDP-glucuronate decar 80.8 2.5 5.4E-05 45.3 5.2 37 246-282 113-150 (442)
310 PF02629 CoA_binding: CoA bind 80.8 1.6 3.4E-05 36.6 3.0 36 251-286 2-38 (96)
311 PRK00683 murD UDP-N-acetylmura 80.7 2.5 5.5E-05 44.6 5.2 34 251-285 2-35 (418)
312 PRK06841 short chain dehydroge 80.6 3 6.5E-05 39.9 5.3 34 249-282 12-46 (255)
313 PLN02545 3-hydroxybutyryl-CoA 80.5 2.5 5.4E-05 42.4 4.9 31 253-284 5-35 (295)
314 PRK06035 3-hydroxyacyl-CoA deh 80.5 2.4 5.2E-05 42.4 4.8 31 253-284 4-34 (291)
315 PRK11891 aspartate carbamoyltr 80.4 61 0.0013 34.9 15.4 171 144-335 124-316 (429)
316 PRK06522 2-dehydropantoate 2-r 80.4 2.5 5.4E-05 41.9 4.8 30 253-282 1-30 (304)
317 cd01974 Nitrogenase_MoFe_beta 80.4 28 0.0006 37.2 13.0 35 248-282 299-333 (435)
318 PRK07774 short chain dehydroge 80.1 3.2 7E-05 39.5 5.3 33 249-281 3-36 (250)
319 PRK09260 3-hydroxybutyryl-CoA 80.0 2.3 5E-05 42.5 4.5 31 253-284 2-32 (288)
320 PRK05557 fabG 3-ketoacyl-(acyl 79.9 3.8 8.1E-05 38.5 5.7 36 249-284 2-38 (248)
321 PRK11730 fadB multifunctional 79.9 2.7 5.9E-05 47.8 5.4 32 253-285 314-345 (715)
322 PTZ00117 malate dehydrogenase; 79.9 2.2 4.7E-05 43.7 4.3 35 250-285 3-38 (319)
323 PRK00421 murC UDP-N-acetylmura 79.8 2.7 5.8E-05 45.0 5.1 35 250-285 5-40 (461)
324 PF13380 CoA_binding_2: CoA bi 79.7 7.3 0.00016 33.9 6.9 100 253-379 1-109 (116)
325 PRK06300 enoyl-(acyl carrier p 79.5 3.1 6.8E-05 42.2 5.3 35 248-283 4-41 (299)
326 PRK07679 pyrroline-5-carboxyla 79.5 3.1 6.8E-05 41.4 5.2 95 251-364 2-105 (279)
327 TIGR01202 bchC 2-desacetyl-2-h 79.5 2.9 6.2E-05 42.0 5.0 35 250-284 143-177 (308)
328 PRK12938 acetyacetyl-CoA reduc 79.5 3.5 7.6E-05 39.2 5.3 34 250-283 1-35 (246)
329 PRK06523 short chain dehydroge 79.4 3.4 7.5E-05 39.7 5.3 35 248-282 5-40 (260)
330 PRK08217 fabG 3-ketoacyl-(acyl 79.4 3.7 7.9E-05 38.9 5.4 35 249-284 2-37 (253)
331 TIGR03736 PRTRC_ThiF PRTRC sys 79.3 2.4 5.1E-05 42.2 4.2 26 251-276 10-35 (244)
332 PF03853 YjeF_N: YjeF-related 79.3 10 0.00023 35.1 8.3 47 230-280 7-57 (169)
333 COG1063 Tdh Threonine dehydrog 79.3 5.9 0.00013 41.0 7.3 32 253-284 170-201 (350)
334 PRK06949 short chain dehydroge 79.2 3.6 7.9E-05 39.3 5.4 35 248-282 5-40 (258)
335 PTZ00434 cytosolic glyceraldeh 79.2 8.3 0.00018 40.5 8.3 32 253-284 4-40 (361)
336 PRK13394 3-hydroxybutyrate deh 79.1 3.5 7.6E-05 39.4 5.3 33 249-281 4-37 (262)
337 PRK07236 hypothetical protein; 79.1 3.4 7.3E-05 42.8 5.5 41 250-291 4-44 (386)
338 COG0673 MviM Predicted dehydro 79.0 11 0.00023 38.0 9.0 70 251-335 2-75 (342)
339 PRK05786 fabG 3-ketoacyl-(acyl 78.9 3.5 7.6E-05 38.9 5.1 34 249-282 2-36 (238)
340 PRK05562 precorrin-2 dehydroge 78.8 3.4 7.4E-05 40.5 5.1 35 249-283 22-56 (223)
341 PLN02240 UDP-glucose 4-epimera 78.8 3.5 7.6E-05 41.6 5.4 34 249-282 2-36 (352)
342 PRK05309 30S ribosomal protein 78.6 8.2 0.00018 34.7 7.0 65 226-290 53-118 (128)
343 TIGR02622 CDP_4_6_dhtase CDP-g 78.5 3.3 7.2E-05 42.1 5.1 33 250-282 2-35 (349)
344 KOG1196 Predicted NAD-dependen 78.5 7.1 0.00015 40.2 7.2 118 223-360 132-257 (343)
345 PRK09287 6-phosphogluconate de 78.5 3.6 7.9E-05 44.5 5.6 163 263-441 1-207 (459)
346 PRK07411 hypothetical protein; 78.4 2.5 5.5E-05 44.6 4.4 36 250-285 36-71 (390)
347 TIGR02441 fa_ox_alpha_mit fatt 78.4 1.7 3.6E-05 49.7 3.2 32 253-285 336-367 (737)
348 PLN02712 arogenate dehydrogena 78.4 3.1 6.8E-05 47.0 5.3 32 250-281 50-81 (667)
349 COG1089 Gmd GDP-D-mannose dehy 78.2 6.9 0.00015 40.1 7.0 94 252-346 2-105 (345)
350 PRK06125 short chain dehydroge 78.1 4.1 8.9E-05 39.2 5.5 34 248-281 3-37 (259)
351 PRK09186 flagellin modificatio 78.1 3.7 8.1E-05 39.2 5.1 32 250-281 2-34 (256)
352 PRK08339 short chain dehydroge 78.1 4.1 8.8E-05 39.8 5.4 36 248-284 4-40 (263)
353 PF01118 Semialdhyde_dh: Semia 78.1 3.6 7.8E-05 35.7 4.5 42 254-299 1-44 (121)
354 PRK12829 short chain dehydroge 78.1 3.7 7.9E-05 39.3 5.0 33 250-282 9-42 (264)
355 PRK06130 3-hydroxybutyryl-CoA 78.0 3.1 6.8E-05 41.9 4.7 31 253-284 5-35 (311)
356 COG0771 MurD UDP-N-acetylmuram 78.0 2.9 6.3E-05 45.1 4.7 36 250-286 5-40 (448)
357 PRK08993 2-deoxy-D-gluconate 3 78.0 3.8 8.2E-05 39.5 5.1 33 249-281 7-40 (253)
358 PRK08703 short chain dehydroge 77.9 4.2 9E-05 38.6 5.3 34 249-282 3-37 (239)
359 PRK05597 molybdopterin biosynt 77.9 2.9 6.3E-05 43.6 4.5 36 250-285 26-61 (355)
360 PLN02586 probable cinnamyl alc 77.7 6.9 0.00015 40.2 7.3 35 250-284 182-216 (360)
361 PRK05808 3-hydroxybutyryl-CoA 77.7 3.1 6.7E-05 41.4 4.5 31 253-284 4-34 (282)
362 PRK05579 bifunctional phosphop 77.7 7.2 0.00016 41.4 7.5 35 248-282 184-235 (399)
363 PRK15181 Vi polysaccharide bio 77.7 3.5 7.6E-05 42.1 5.1 36 248-283 11-47 (348)
364 PRK08945 putative oxoacyl-(acy 77.7 3.7 8E-05 39.2 4.9 34 250-284 10-44 (247)
365 CHL00041 rps11 ribosomal prote 77.7 9.2 0.0002 33.7 7.0 65 226-290 49-114 (116)
366 PRK09072 short chain dehydroge 77.6 4.3 9.4E-05 39.2 5.4 34 249-282 2-36 (263)
367 PRK06057 short chain dehydroge 77.6 4 8.7E-05 39.2 5.2 32 250-281 5-37 (255)
368 PLN02695 GDP-D-mannose-3',5'-e 77.5 3.5 7.6E-05 42.7 5.0 32 251-282 20-52 (370)
369 PRK08416 7-alpha-hydroxysteroi 77.5 4.3 9.3E-05 39.3 5.4 37 248-284 4-41 (260)
370 PRK07806 short chain dehydroge 77.3 4.9 0.00011 38.2 5.7 35 249-283 3-38 (248)
371 COG1004 Ugd Predicted UDP-gluc 77.3 7.7 0.00017 41.2 7.4 92 250-360 308-411 (414)
372 PRK12429 3-hydroxybutyrate deh 77.3 4.1 8.9E-05 38.8 5.1 33 250-282 2-35 (258)
373 PRK08063 enoyl-(acyl carrier p 77.2 4.4 9.6E-05 38.5 5.3 35 250-284 2-37 (250)
374 PRK08642 fabG 3-ketoacyl-(acyl 77.1 4.4 9.5E-05 38.5 5.3 34 250-283 3-37 (253)
375 PRK06124 gluconate 5-dehydroge 77.1 4.5 9.8E-05 38.8 5.4 36 248-284 7-43 (256)
376 PRK06505 enoyl-(acyl carrier p 77.0 4 8.6E-05 40.2 5.1 34 250-284 5-41 (271)
377 PLN02427 UDP-apiose/xylose syn 76.9 4 8.8E-05 42.2 5.3 36 247-282 9-46 (386)
378 PLN00141 Tic62-NAD(P)-related 76.9 4.4 9.5E-05 39.2 5.2 35 250-284 15-50 (251)
379 PRK12742 oxidoreductase; Provi 76.9 4.6 0.0001 38.0 5.3 33 249-281 3-36 (237)
380 PRK07878 molybdopterin biosynt 76.8 3.1 6.7E-05 43.9 4.4 36 250-285 40-75 (392)
381 PRK06172 short chain dehydroge 76.8 4.3 9.3E-05 38.8 5.1 35 249-284 4-39 (253)
382 PRK09620 hypothetical protein; 76.7 4.5 9.8E-05 39.6 5.3 34 250-283 1-51 (229)
383 PF13460 NAD_binding_10: NADH( 76.7 4.4 9.5E-05 36.8 4.9 30 255-284 1-31 (183)
384 TIGR03632 bact_S11 30S ribosom 76.7 10 0.00022 33.0 6.9 65 226-290 36-101 (108)
385 PRK07890 short chain dehydroge 76.6 4.3 9.3E-05 38.8 5.1 34 250-284 3-37 (258)
386 PRK05867 short chain dehydroge 76.6 4.7 0.0001 38.7 5.4 35 249-284 6-41 (253)
387 PRK06129 3-hydroxyacyl-CoA deh 76.5 3.6 7.8E-05 41.6 4.7 32 253-285 3-34 (308)
388 PRK07533 enoyl-(acyl carrier p 76.5 4.5 9.8E-05 39.3 5.3 35 249-284 7-44 (258)
389 PRK06249 2-dehydropantoate 2-r 76.5 3 6.5E-05 42.3 4.1 33 250-282 3-35 (313)
390 TIGR02437 FadB fatty oxidation 76.5 2.5 5.3E-05 48.2 3.8 32 253-285 314-345 (714)
391 COG0300 DltE Short-chain dehyd 76.4 4.7 0.0001 40.6 5.3 35 250-284 4-39 (265)
392 PRK05875 short chain dehydroge 76.4 4.8 0.0001 39.1 5.4 34 249-282 4-38 (276)
393 PRK05876 short chain dehydroge 76.4 4.3 9.4E-05 40.0 5.1 34 250-284 4-38 (275)
394 PRK12771 putative glutamate sy 76.3 3.5 7.5E-05 45.4 4.8 34 250-284 135-168 (564)
395 PRK05653 fabG 3-ketoacyl-(acyl 76.3 4.8 0.0001 37.8 5.2 34 249-282 2-36 (246)
396 PRK06079 enoyl-(acyl carrier p 76.2 4.4 9.6E-05 39.2 5.1 32 250-281 5-39 (252)
397 PRK07792 fabG 3-ketoacyl-(acyl 76.2 4.9 0.00011 40.3 5.6 36 248-284 8-44 (306)
398 PRK09135 pteridine reductase; 76.2 5.1 0.00011 37.8 5.4 34 250-283 4-38 (249)
399 PRK06194 hypothetical protein; 76.1 4.6 0.0001 39.5 5.2 35 249-284 3-38 (287)
400 PRK12939 short chain dehydroge 76.0 5 0.00011 38.0 5.3 33 249-281 4-37 (250)
401 PRK07831 short chain dehydroge 75.9 4.6 9.9E-05 39.0 5.1 34 250-284 15-50 (262)
402 PRK08085 gluconate 5-dehydroge 75.9 5.1 0.00011 38.4 5.4 35 249-284 6-41 (254)
403 PRK08291 ectoine utilization p 75.7 27 0.00059 35.8 10.9 120 250-382 130-253 (330)
404 PRK02705 murD UDP-N-acetylmura 75.7 4 8.6E-05 43.4 5.0 31 254-285 2-32 (459)
405 COG0362 Gnd 6-phosphogluconate 75.6 12 0.00026 39.9 8.2 106 253-377 4-124 (473)
406 PRK08213 gluconate 5-dehydroge 75.5 5.5 0.00012 38.3 5.5 35 248-282 8-43 (259)
407 PRK06196 oxidoreductase; Provi 75.4 5.3 0.00011 40.1 5.5 36 247-282 21-57 (315)
408 PLN02662 cinnamyl-alcohol dehy 75.3 4.2 9E-05 40.4 4.7 32 251-282 3-35 (322)
409 PRK07577 short chain dehydroge 75.3 5.2 0.00011 37.6 5.2 33 251-283 2-35 (234)
410 PLN02653 GDP-mannose 4,6-dehyd 75.3 4.5 9.7E-05 40.9 5.0 34 249-282 3-37 (340)
411 PLN02214 cinnamoyl-CoA reducta 75.2 4.7 0.0001 41.1 5.2 34 250-283 8-42 (342)
412 PRK06935 2-deoxy-D-gluconate 3 75.1 5.4 0.00012 38.4 5.3 33 249-281 12-45 (258)
413 PRK06171 sorbitol-6-phosphate 75.1 5.3 0.00011 38.6 5.3 33 249-281 6-39 (266)
414 PRK08594 enoyl-(acyl carrier p 75.1 5.2 0.00011 39.0 5.2 35 249-284 4-41 (257)
415 PRK06398 aldose dehydrogenase; 75.0 5.3 0.00012 38.7 5.3 34 249-282 3-37 (258)
416 PRK06197 short chain dehydroge 75.0 5 0.00011 40.0 5.2 35 249-283 13-48 (306)
417 TIGR01850 argC N-acetyl-gamma- 75.0 8.5 0.00018 39.9 7.0 33 253-285 1-35 (346)
418 PRK01368 murD UDP-N-acetylmura 75.0 3.7 8.1E-05 44.1 4.5 33 250-284 4-36 (454)
419 PRK07097 gluconate 5-dehydroge 74.9 5.4 0.00012 38.6 5.3 36 248-284 6-42 (265)
420 PRK08265 short chain dehydroge 74.8 5.7 0.00012 38.5 5.4 35 249-284 3-38 (261)
421 TIGR03325 BphB_TodD cis-2,3-di 74.8 5.6 0.00012 38.5 5.4 33 249-281 2-35 (262)
422 PRK07067 sorbitol dehydrogenas 74.7 5.4 0.00012 38.3 5.2 32 250-281 4-36 (257)
423 PRK12769 putative oxidoreducta 74.7 4.3 9.3E-05 45.6 5.1 35 250-285 325-359 (654)
424 PRK09496 trkA potassium transp 74.6 4 8.6E-05 43.1 4.6 29 253-281 1-29 (453)
425 PRK07062 short chain dehydroge 74.5 5.7 0.00012 38.3 5.4 34 248-281 4-38 (265)
426 PRK08936 glucose-1-dehydrogena 74.5 6.5 0.00014 37.9 5.7 36 248-283 3-39 (261)
427 PLN02986 cinnamyl-alcohol dehy 74.4 5.5 0.00012 39.8 5.4 34 251-284 4-38 (322)
428 PRK08264 short chain dehydroge 74.4 5.5 0.00012 37.6 5.1 34 249-282 3-38 (238)
429 PRK07984 enoyl-(acyl carrier p 74.3 5.4 0.00012 39.2 5.2 34 250-284 4-40 (262)
430 PF01494 FAD_binding_3: FAD bi 74.2 4.7 0.0001 39.9 4.7 32 254-286 3-34 (356)
431 PRK07035 short chain dehydroge 74.1 5.8 0.00013 37.9 5.3 34 249-282 5-39 (252)
432 PRK07326 short chain dehydroge 74.1 5.5 0.00012 37.5 5.0 32 250-281 4-36 (237)
433 PRK12746 short chain dehydroge 74.0 6.3 0.00014 37.6 5.5 33 249-281 3-36 (254)
434 smart00859 Semialdhyde_dh Semi 74.0 8.3 0.00018 33.2 5.7 31 254-284 1-33 (122)
435 PRK05866 short chain dehydroge 74.0 6.1 0.00013 39.4 5.6 36 247-282 35-71 (293)
436 PRK08226 short chain dehydroge 74.0 5.7 0.00012 38.2 5.2 34 249-282 3-37 (263)
437 PRK07576 short chain dehydroge 73.9 5.9 0.00013 38.5 5.3 34 249-282 6-40 (264)
438 PRK06550 fabG 3-ketoacyl-(acyl 73.9 5.8 0.00013 37.4 5.1 34 249-282 2-36 (235)
439 PRK08818 prephenate dehydrogen 73.9 9.8 0.00021 40.1 7.2 33 251-284 3-37 (370)
440 PRK06463 fabG 3-ketoacyl-(acyl 73.9 6.8 0.00015 37.6 5.7 34 249-282 4-38 (255)
441 TIGR03206 benzo_BadH 2-hydroxy 73.6 5.7 0.00012 37.7 5.0 32 250-281 1-33 (250)
442 PRK07814 short chain dehydroge 73.6 5.8 0.00013 38.4 5.2 35 249-284 7-42 (263)
443 PRK03806 murD UDP-N-acetylmura 73.5 5.8 0.00013 42.0 5.5 35 250-285 4-38 (438)
444 cd01487 E1_ThiF_like E1_ThiF_l 73.5 4.7 0.0001 37.6 4.3 32 254-285 1-32 (174)
445 PRK12937 short chain dehydroge 73.5 6.8 0.00015 37.0 5.5 35 249-283 2-37 (245)
446 PRK10637 cysG siroheme synthas 73.5 4.3 9.2E-05 43.7 4.5 35 248-282 8-42 (457)
447 PRK12770 putative glutamate sy 73.5 13 0.00027 38.2 7.8 36 250-285 170-205 (352)
448 PRK06914 short chain dehydroge 73.5 6.4 0.00014 38.3 5.4 32 251-282 2-34 (280)
449 PRK12921 2-dehydropantoate 2-r 73.4 4.6 9.9E-05 40.2 4.5 30 253-282 1-30 (305)
450 PF00056 Ldh_1_N: lactate/mala 73.4 6.2 0.00013 35.5 4.9 32 253-285 1-35 (141)
451 PRK12825 fabG 3-ketoacyl-(acyl 73.2 6.9 0.00015 36.7 5.4 35 250-284 4-39 (249)
452 PRK03803 murD UDP-N-acetylmura 73.0 5.2 0.00011 42.5 5.0 33 252-285 6-38 (448)
453 PRK06077 fabG 3-ketoacyl-(acyl 73.0 7.1 0.00015 37.0 5.5 36 249-284 3-39 (252)
454 PRK00711 D-amino acid dehydrog 72.9 5.1 0.00011 41.6 4.8 32 253-285 1-32 (416)
455 TIGR00670 asp_carb_tr aspartat 72.7 1.2E+02 0.0025 31.1 17.0 149 169-335 56-224 (301)
456 PRK06182 short chain dehydroge 72.7 6.4 0.00014 38.3 5.2 32 251-282 2-34 (273)
457 PRK12823 benD 1,6-dihydroxycyc 72.6 6.3 0.00014 37.8 5.1 35 249-284 5-40 (260)
458 PRK12481 2-deoxy-D-gluconate 3 72.6 6.1 0.00013 38.1 5.0 33 249-281 5-38 (251)
459 PRK08013 oxidoreductase; Provi 72.6 5.1 0.00011 41.7 4.8 33 252-285 3-35 (400)
460 KOG1502 Flavonol reductase/cin 72.6 6.5 0.00014 40.8 5.3 33 251-283 5-38 (327)
461 KOG1257 NADP+-dependent malic 72.5 40 0.00088 37.1 11.4 175 160-361 234-427 (582)
462 PLN00198 anthocyanidin reducta 72.5 6 0.00013 39.9 5.1 34 249-282 6-40 (338)
463 PRK08849 2-octaprenyl-3-methyl 72.5 5.4 0.00012 41.2 4.9 32 253-285 4-35 (384)
464 PRK12748 3-ketoacyl-(acyl-carr 72.5 5.9 0.00013 38.1 4.9 34 249-282 2-38 (256)
465 TIGR03570 NeuD_NnaD sugar O-ac 72.5 6.4 0.00014 36.1 4.9 33 254-286 1-33 (201)
466 PRK12409 D-amino acid dehydrog 72.4 5.1 0.00011 41.6 4.7 31 253-284 2-32 (410)
467 PRK08017 oxidoreductase; Provi 72.4 6 0.00013 37.8 4.9 30 253-282 3-33 (256)
468 PRK05872 short chain dehydroge 72.4 6.9 0.00015 38.9 5.5 33 249-281 6-39 (296)
469 PRK06114 short chain dehydroge 72.3 6.9 0.00015 37.6 5.3 35 249-284 5-40 (254)
470 PRK08507 prephenate dehydrogen 72.3 5.8 0.00013 39.3 4.9 69 253-340 1-71 (275)
471 PRK06500 short chain dehydroge 72.3 6.1 0.00013 37.4 4.9 32 250-281 4-36 (249)
472 PRK08220 2,3-dihydroxybenzoate 72.3 7.3 0.00016 37.1 5.4 35 248-282 4-39 (252)
473 TIGR01087 murD UDP-N-acetylmur 72.3 4.9 0.00011 42.4 4.6 31 254-285 1-31 (433)
474 PLN02166 dTDP-glucose 4,6-dehy 72.2 6.2 0.00013 42.2 5.4 37 246-282 114-151 (436)
475 PLN02514 cinnamyl-alcohol dehy 72.1 12 0.00026 38.3 7.3 42 243-284 172-213 (357)
476 PRK09242 tropinone reductase; 72.1 6.6 0.00014 37.7 5.1 34 249-282 6-40 (257)
477 PRK07825 short chain dehydroge 72.1 7.2 0.00016 37.8 5.4 33 249-281 2-35 (273)
478 PRK07531 bifunctional 3-hydrox 71.8 5.1 0.00011 43.5 4.7 31 253-284 5-35 (495)
479 PF02558 ApbA: Ketopantoate re 71.7 7 0.00015 34.6 4.8 30 255-284 1-30 (151)
480 PRK07063 short chain dehydroge 71.7 6.8 0.00015 37.6 5.1 35 249-284 4-39 (260)
481 TIGR02130 dapB_plant dihydrodi 71.6 8.5 0.00018 39.0 5.8 116 254-382 2-127 (275)
482 PRK07066 3-hydroxybutyryl-CoA 71.5 5.9 0.00013 40.9 4.8 31 253-284 8-38 (321)
483 TIGR02440 FadJ fatty oxidation 71.4 3.9 8.4E-05 46.5 3.8 32 253-285 305-337 (699)
484 PRK06753 hypothetical protein; 71.4 5.4 0.00012 40.7 4.5 32 253-285 1-32 (373)
485 PRK07856 short chain dehydroge 71.4 7.9 0.00017 37.1 5.5 34 249-282 3-37 (252)
486 COG0654 UbiH 2-polyprenyl-6-me 71.3 6.4 0.00014 40.9 5.2 33 252-285 2-34 (387)
487 PLN02730 enoyl-[acyl-carrier-p 71.3 6.1 0.00013 40.2 4.8 34 247-280 4-40 (303)
488 PLN02657 3,8-divinyl protochlo 71.2 7.2 0.00016 40.9 5.5 36 247-282 55-91 (390)
489 KOG0023 Alcohol dehydrogenase, 71.1 7.7 0.00017 40.3 5.4 43 242-285 173-215 (360)
490 PRK12859 3-ketoacyl-(acyl-carr 71.1 6.7 0.00014 37.9 4.9 33 249-281 3-38 (256)
491 PRK05993 short chain dehydroge 71.0 7 0.00015 38.3 5.1 31 252-282 4-35 (277)
492 PRK05708 2-dehydropantoate 2-r 71.0 5.4 0.00012 40.4 4.4 31 253-283 3-33 (305)
493 PRK08415 enoyl-(acyl carrier p 70.8 6.9 0.00015 38.7 5.0 35 250-285 3-40 (274)
494 PRK07494 2-octaprenyl-6-methox 70.6 5.8 0.00012 40.8 4.6 34 251-285 6-39 (388)
495 PRK07478 short chain dehydroge 70.4 7.9 0.00017 37.1 5.2 34 249-282 3-37 (254)
496 PRK05854 short chain dehydroge 70.3 7.6 0.00017 39.1 5.3 34 249-282 11-45 (313)
497 PRK07502 cyclohexadienyl dehyd 70.3 6.5 0.00014 39.7 4.8 32 252-284 6-39 (307)
498 PLN02253 xanthoxin dehydrogena 70.3 7.9 0.00017 37.7 5.3 33 249-281 15-48 (280)
499 PRK06603 enoyl-(acyl carrier p 70.3 7.2 0.00016 38.0 5.0 34 250-284 6-42 (260)
500 cd01965 Nitrogenase_MoFe_beta_ 70.2 36 0.00077 36.2 10.6 35 249-283 296-330 (428)
No 1
>PLN02477 glutamate dehydrogenase
Probab=100.00 E-value=5e-130 Score=1014.08 Aligned_cols=410 Identities=83% Similarity=1.344 Sum_probs=405.5
Q ss_pred CCHHHHHHHHHHHHHHHcCCChHHHHhhcCCCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCeeeecCCCHHHH
Q 012750 47 MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEV 126 (457)
Q Consensus 47 ~~~~~~~~~~~~~a~~~~~~~~~~~~~L~~p~r~~~v~~pv~~d~G~~~~f~G~rv~h~~a~GPakGGiR~~~~~~~~ev 126 (457)
+++|++++.+|++|+++++++|++.++|++|+|+++|+|||+||||++++|+|||||||+++||+||||||||++|++||
T Consensus 1 ~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~p~r~~~v~~p~~~d~g~~~~~~gyRvqh~~~~GP~kGGiR~~p~v~~~ev 80 (410)
T PLN02477 1 MNALAATNRNFREAARLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRVQHDNARGPMKGGIRYHPEVDPDEV 80 (410)
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHHHHHhcCceEEEEEEEEEECCCcEEEeeeeEeeecCccCCCCCCeeecCCCCHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhhh
Q 012750 127 NALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKF 206 (457)
Q Consensus 127 ~~LA~~Mt~K~Al~~lP~GGaKGgI~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi~d~~~~~ 206 (457)
++||+||||||||++||||||||||.+||+++|+.|+|+++|+|+++|.+++||+.|||||||||++++|+||+|+|+++
T Consensus 81 ~~La~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~~~ 160 (410)
T PLN02477 81 NALAQLMTWKTAVANIPYGGAKGGIGCDPRDLSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKF 160 (410)
T ss_pred HHHHHHHHHHHHhcCCCCcCceeeeccCCccCCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCceecCcccCCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCC
Q 012750 207 HGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG 286 (457)
Q Consensus 207 ~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G 286 (457)
.|++|+++||||+.+|||.+|+++||+||+++++++++++|.+++|+||+||||||||+++|++|.++|+|||||||++|
T Consensus 161 ~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G 240 (410)
T PLN02477 161 HGFSPAVVTGKPIDLGGSLGREAATGRGVVFATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITG 240 (410)
T ss_pred hCCCCceEeCCCcccCCCCCCCccchHHHHHHHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccceeeccccCCcccccccccccceEEEecCCCCCCHHHH
Q 012750 287 AVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEAD 366 (457)
Q Consensus 287 ~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t~~a~ 366 (457)
++|||+|||+++|++++++++++.+|++++.++++++|..+||||+|||++++||++|+++++||+|+||||+|+||+|+
T Consensus 241 ~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~~~DvliP~Al~~~I~~~na~~i~ak~I~egAN~p~t~ea~ 320 (410)
T PLN02477 241 AVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVEPCDVLIPAALGGVINKENAADVKAKFIVEAANHPTDPEAD 320 (410)
T ss_pred eEECCCCCCHHHHHHHHHhcCchhccccceEecCccceeccccEEeeccccccCCHhHHHHcCCcEEEeCCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCeEecccccccCCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 012750 367 EILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRV 446 (457)
Q Consensus 367 ~iL~~rGI~viPD~laNaGGVi~S~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~rv 446 (457)
++|++|||+|+||+++||||||+|||||+||+++++|++++|+++|+++|.++|+++++.|+++++++|+|||++|++||
T Consensus 321 ~~L~~rGI~~~PD~~aNaGGVivs~~E~~qn~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~a~~rv 400 (410)
T PLN02477 321 EILRKKGVVVLPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNRELDRYMTDAFKALKEMCKTHNCSLRMGAFTLGVNRV 400 (410)
T ss_pred HHHHHCCcEEEChHHhCCCCeeeeHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCcc
Q 012750 447 ARATTLRGWE 456 (457)
Q Consensus 447 ~~a~~~rG~~ 456 (457)
+++|+.|||.
T Consensus 401 ~~a~~~rG~~ 410 (410)
T PLN02477 401 ARATVLRGWE 410 (410)
T ss_pred HHHHHhhCCC
Confidence 9999999984
No 2
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-128 Score=985.30 Aligned_cols=409 Identities=49% Similarity=0.841 Sum_probs=403.0
Q ss_pred CHHHHHHHHHHHHHHHcCCChHHHHhhcCCCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCeeeecCCCHHHHH
Q 012750 48 NALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVN 127 (457)
Q Consensus 48 ~~~~~~~~~~~~a~~~~~~~~~~~~~L~~p~r~~~v~~pv~~d~G~~~~f~G~rv~h~~a~GPakGGiR~~~~~~~~ev~ 127 (457)
++|++++.++++|++.++++++++++|++|+|.++|++||+||||++++|+|||||||+++||+|||+||||++|++||+
T Consensus 2 ~~~~~a~~~~~~~~~~~~~~~~~~e~l~~p~r~i~~~i~v~~d~g~~~~~~g~rvqhn~a~GP~kGGiRfhP~v~~~ev~ 81 (411)
T COG0334 2 NEFEQAVKELEKALEPLYLDEGVLERLKEPERVIQVRIPVRMDDGSVKVFRGYRVQHNSALGPYKGGVRFHPYVTLEEVK 81 (411)
T ss_pred cHHHHHHHHHHHhhhhccCchhHHHHhcCceeEEEEEEEEEEcCCcEeeeEEEEEEecCCcCCccCceecCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhhhh
Q 012750 128 ALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFH 207 (457)
Q Consensus 128 ~LA~~Mt~K~Al~~lP~GGaKGgI~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi~d~~~~~~ 207 (457)
+||+||||||||++||||||||||++||+.+|+.|+||++|+|+++|.+++||++||||||+||++++|+||+|+|+++.
T Consensus 82 ~Ls~~MT~Knal~~Lp~GGGKGgi~~DPk~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~ 161 (411)
T COG0334 82 ALSFWMTLKNALAGLPYGGGKGGIIVDPKGLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIV 161 (411)
T ss_pred HHHHHHHHHHHHhCCCCCCCceeeeCCcccCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCceecCcccCCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCC
Q 012750 208 GH-SPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG 286 (457)
Q Consensus 208 g~-~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G 286 (457)
|. .||++||||+++|||.+|+++|||||+++++++++.+|.+++|+||+||||||||+++|++|++.|+|||++||++|
T Consensus 162 g~~~~gv~TGKp~~~GGS~~r~~aTg~Gv~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g 241 (411)
T COG0334 162 GNSAPGVFTGKPLELGGSLGRSEATGYGVFYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKG 241 (411)
T ss_pred CCCCcceecCCcccccCCCCCCcccceehHHHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 87 59999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccceeeccccCCcccccccccccceEEEecCCCCCCHHHH
Q 012750 287 AVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEAD 366 (457)
Q Consensus 287 ~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t~~a~ 366 (457)
++|||+|||+++|.+.+++.+++..|++++.++++++|+.+||||+|||++|+||++||++|+||+|+||||+|+|++|+
T Consensus 242 ~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~~~cDIl~PcA~~n~I~~~na~~l~ak~V~EgAN~P~t~eA~ 321 (411)
T COG0334 242 GIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLEVDCDILIPCALENVITEDNADQLKAKIVVEGANGPTTPEAD 321 (411)
T ss_pred ceecCCCCCHHHHHHHhhhhhhHHhhcCceEccccccccccCcEEcccccccccchhhHHHhhhcEEEeccCCCCCHHHH
Confidence 99999999999999877788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCeEecccccccCCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 012750 367 EILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRV 446 (457)
Q Consensus 367 ~iL~~rGI~viPD~laNaGGVi~S~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~rv 446 (457)
++|.+|||+|+||+++|||||++|||||+||.++++|++|+|+++|+++|.++++.+++.++++++++|+|||++|++||
T Consensus 322 ~i~~erGIl~~PD~laNAGGV~vS~~E~~qn~~~~~wt~eev~~kl~~im~~~~~~~~~~~~~~~~~~r~aA~~~a~~Rv 401 (411)
T COG0334 322 EILLERGILVVPDILANAGGVIVSYLEWVQNAQGLYWTEEEVDEKLERIMVNAFEAVYQAAKEYGVDLRTAAYILAFERV 401 (411)
T ss_pred HHHHHCCCEEcChhhccCcCeeeehHHHHhhcccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCcc
Q 012750 447 ARATTLRGWE 456 (457)
Q Consensus 447 ~~a~~~rG~~ 456 (457)
++||+.|||+
T Consensus 402 a~Am~~~G~~ 411 (411)
T COG0334 402 ADAMKARGWY 411 (411)
T ss_pred HHHHHhcCCC
Confidence 9999999985
No 3
>PRK14030 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=4.4e-127 Score=996.36 Aligned_cols=412 Identities=29% Similarity=0.444 Sum_probs=403.9
Q ss_pred hcCCHHHHHHHHHHHHHHHcCCChH-----HHHhhcCCCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCeeeec
Q 012750 45 IVMNALAATSRNFRNAARILGLDSK-----LERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHP 119 (457)
Q Consensus 45 ~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~L~~p~r~~~v~~pv~~d~G~~~~f~G~rv~h~~a~GPakGGiR~~~ 119 (457)
...+|||+++.++++|+++++++|+ ++++|++|+|+++|+|||+||||++++|+|||||||+++||+||||||||
T Consensus 16 ~e~eF~~~~~~~~~~~~~~l~~~~~y~~~~~~~~l~~p~r~i~~~vp~~~d~G~~~~~~GyRvqhn~~lGP~kGGiR~~p 95 (445)
T PRK14030 16 GESEYLQAVKEVLLSVEDVYNQHPEFEKAKIIERIVEPDRIFTFRVPWVDDKGEVQVNLGYRVQFNNAIGPYKGGIRFHP 95 (445)
T ss_pred CChHHHHHHHHHHHHHHHHHccChhhhhhHHHHHhhcCcEEEEEEEEEEECCCcEEEEeeEEEEecCcccCCCCcEEecC
Confidence 5789999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHH
Q 012750 120 EVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWI 199 (457)
Q Consensus 120 ~~~~~ev~~LA~~Mt~K~Al~~lP~GGaKGgI~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi 199 (457)
+++++|+++||+||||||||++||||||||||.+||+.+|+.|+||++|+|+++|.++|||+.|||||||||++++|+||
T Consensus 96 ~v~~~~v~aLa~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt~~~~M~w~ 175 (445)
T PRK14030 96 SVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFSPRGKSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGVGGREVGYM 175 (445)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCceeeecCCCccCCHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhCCCCceecCcccCCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEE
Q 012750 200 LDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVI 279 (457)
Q Consensus 200 ~d~~~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVV 279 (457)
+|+|+++.+..++++||||+.+|||.+|.++|||||++++++++++.|.+++|+||+||||||||+++|++|.+.|+|||
T Consensus 176 ~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvV 255 (445)
T PRK14030 176 FGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATELGAKVV 255 (445)
T ss_pred HHHHHhccCccccEEEccccccCCCCCCCCccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEE
Confidence 99999999988999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCeeeCCCCCCHHH---HHHhHhhcCCcc-----cCCCCeecCCCcccccccceeeccccCCcccccccccc---
Q 012750 280 AVSDITGAVKNADGIDIHK---LLAHKDKTGSLK-----DFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADV--- 348 (457)
Q Consensus 280 aVsD~~G~iynp~GLDi~~---L~~~~~~~g~~~-----~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i--- 348 (457)
+|||++|+||||+|||+++ |++++++++++. +||+++.++++++|+.+||||+|||++|+||++||++|
T Consensus 256 avSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i~~~~~~~~~cDVliPcAl~n~I~~~na~~l~~~ 335 (445)
T PRK14030 256 TISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFFAGKKPWEQKVDIALPCATQNELNGEDADKLIKN 335 (445)
T ss_pred EEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEcCCccceeccccEEeeccccccCCHHHHHHHHHc
Confidence 9999999999999999888 888998888875 78888999999999999999999999999999999999
Q ss_pred cceEEEecCCCCCCHHHHHHHHhCCCeEecccccccCCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 012750 349 KAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQ 428 (457)
Q Consensus 349 ~akiIvEgAN~p~t~~a~~iL~~rGI~viPD~laNaGGVi~S~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~ 428 (457)
+||+|+||||+|+||+|+++|++|||+|+||+++|||||++|||||+||+++++|++|+|+++|+++|.++|+++++.++
T Consensus 336 ~ak~V~EgAN~p~t~eA~~iL~~rGI~~vPD~~aNAGGVivs~~E~~qn~~~~~w~~eeV~~~L~~~m~~~~~~v~~~~~ 415 (445)
T PRK14030 336 GVLCVAEVSNMGCTAEAIDKFIAAKQLFAPGKAVNAGGVATSGLEMSQNAMHLSWSAEEVDEKLHQIMSGIHEQCVKYGK 415 (445)
T ss_pred CCeEEEeCCCCCCCHHHHHHHHHCCCEEeCcceecCCCeeeehhhhhccccccCcCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcC--CCHHHHHHHHHHHHHHHHHHHcCcc
Q 012750 429 THN--CNLRMGAFTLGVNRVARATTLRGWE 456 (457)
Q Consensus 429 ~~~--~~~r~aA~~~A~~rv~~a~~~rG~~ 456 (457)
+++ +++|+|||++|++||++||+.|||.
T Consensus 416 ~~~~~~~lr~aA~~~a~~rva~a~~~rG~~ 445 (445)
T PRK14030 416 EGDGYINYVKGANIAGFMKVAKAMLAQGVV 445 (445)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999 9999999999999999999999984
No 4
>PRK09414 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=7.8e-124 Score=974.80 Aligned_cols=412 Identities=31% Similarity=0.503 Sum_probs=402.9
Q ss_pred hcCCHHHHHHHHHHHHHHHcCCChH-----HHHhhcCCCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCeeeec
Q 012750 45 IVMNALAATSRNFRNAARILGLDSK-----LERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHP 119 (457)
Q Consensus 45 ~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~L~~p~r~~~v~~pv~~d~G~~~~f~G~rv~h~~a~GPakGGiR~~~ 119 (457)
...++|++++.+|++|+++++++|+ ++++|++|+|+++|++||+||||++++|+|||||||+++||+||||||||
T Consensus 20 ~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~l~~p~r~i~v~~pv~~d~g~~~~~~gyRv~h~~~~GPakGG~R~~p 99 (445)
T PRK09414 20 GQPEFHQAVREVLESLWPVLEKNPEYAEAGILERLVEPERVIIFRVPWVDDKGQVQVNRGFRVQFNSAIGPYKGGLRFHP 99 (445)
T ss_pred CCchHHHHHHHHHHHHHHHhccChhhhhhhHHHHhcCCceEEEEEEEEEECCCcEEEEeeeEEEecCCCcCCCCceeecC
Confidence 5778999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHH
Q 012750 120 EVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWI 199 (457)
Q Consensus 120 ~~~~~ev~~LA~~Mt~K~Al~~lP~GGaKGgI~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi 199 (457)
+++.+|+.+||+||||||||++||||||||||.+||+++|+.|+||++|+|+++|.+++||+.|||||||||++++|+||
T Consensus 100 ~v~~~ev~aLA~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt~~~~M~~~ 179 (445)
T PRK09414 100 SVNLSILKFLGFEQIFKNALTGLPIGGGKGGSDFDPKGKSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYL 179 (445)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCceeeeecCCccCCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhCCCCceecCcccCCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEE
Q 012750 200 LDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVI 279 (457)
Q Consensus 200 ~d~~~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVV 279 (457)
+|+|+++.++..+++||||+.+|||.+|.++||+||++++++++++.+.+++|+||+||||||||+++|++|.+.|+|||
T Consensus 180 ~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVV 259 (445)
T PRK09414 180 FGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLVYFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVV 259 (445)
T ss_pred HHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEE
Confidence 99999999987799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCeeeCCCCCCHHHHHHhHhhc-CCcccCC---CCeecCCCcccccccceeeccccCCcccccccccc---cceE
Q 012750 280 AVSDITGAVKNADGIDIHKLLAHKDKT-GSLKDFD---GGDSMEPSELLAHECDVLIPCALGGVLKRENAADV---KAKF 352 (457)
Q Consensus 280 aVsD~~G~iynp~GLDi~~L~~~~~~~-g~~~~~~---~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i---~aki 352 (457)
+|||++|++|||+|||+++|+++++++ +++.+|+ +++.++++++++.+||||||||++|+||++|+.++ +||+
T Consensus 260 avsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~i~~~d~DVliPaAl~n~It~~~a~~i~~~~aki 339 (445)
T PRK09414 260 TCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGSPWSVPCDIALPCATQNELDEEDAKTLIANGVKA 339 (445)
T ss_pred EEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCccccccCCcEEEecCCcCcCCHHHHHHHHHcCCeE
Confidence 999999999999999999999999886 5788887 56778999999999999999999999999999999 9999
Q ss_pred EEecCCCCCCHHHHHHHHhCCCeEecccccccCCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q 012750 353 IIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHN- 431 (457)
Q Consensus 353 IvEgAN~p~t~~a~~iL~~rGI~viPD~laNaGGVi~S~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~- 431 (457)
|+||||+|+||+|+++|++|||+|+||+++||||||+|||||+||.++++|++++|+++|+++|.++|+++++.+++++
T Consensus 340 IvEgAN~p~t~~A~~~L~~rGI~~vPD~laNaGGVivs~~E~~qn~~~~~w~~~~V~~~l~~~m~~~~~~~~~~~~~~~~ 419 (445)
T PRK09414 340 VAEGANMPSTPEAIEVFLEAGVLFAPGKAANAGGVATSGLEMSQNASRLSWTFEEVDARLHDIMKNIHHACVETAEEYGK 419 (445)
T ss_pred EEcCCCCCCCHHHHHHHHHCCcEEECchhhcCCCeeeeehhhccccccceecHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHcCcc
Q 012750 432 -CNLRMGAFTLGVNRVARATTLRGWE 456 (457)
Q Consensus 432 -~~~r~aA~~~A~~rv~~a~~~rG~~ 456 (457)
+++|+|||++|++||++||+.|||+
T Consensus 420 ~~~~r~aA~~~a~~rv~~a~~~rG~~ 445 (445)
T PRK09414 420 PGNYVAGANIAGFVKVADAMLAQGVI 445 (445)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999985
No 5
>PRK14031 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=4.8e-120 Score=944.29 Aligned_cols=412 Identities=30% Similarity=0.473 Sum_probs=395.6
Q ss_pred hcCCHHHHHHHHHHHHHHHcCCChHH-----HHhhcCCCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCeeeec
Q 012750 45 IVMNALAATSRNFRNAARILGLDSKL-----ERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHP 119 (457)
Q Consensus 45 ~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~L~~p~r~~~v~~pv~~d~G~~~~f~G~rv~h~~a~GPakGGiR~~~ 119 (457)
...+|+|.++..+..-..+++-+|++ +++|++|+|+++|++||+||||++++|+|||||||+++||+||||||||
T Consensus 16 ~~~e~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~gyRvqhn~~lGP~kGGiR~~p 95 (444)
T PRK14031 16 NEPEYHQAVEEVLSTIEEEYNKHPEFDKANLIERLCIPDRVYQFRVTWVDDKGNVQTNMGYRVQHNNAIGPYKGGIRFHA 95 (444)
T ss_pred CChHHHHHHHHHHHHHHHHHHhChhhhhhhHHHHhhcCceEEEEEEEEEECCCCEEEEeeEEEEecCCCcCCCCCeeecC
Confidence 46678888888888888888877765 5599999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHH
Q 012750 120 EVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWI 199 (457)
Q Consensus 120 ~~~~~ev~~LA~~Mt~K~Al~~lP~GGaKGgI~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi 199 (457)
+++++|+++||+||||||||++||||||||||.+||+++|..|+||++|+|+++|.++|||+.||||||+||++++|+||
T Consensus 96 ~v~~~~v~aLa~~MT~K~Al~~lP~GGgKggi~~dP~~~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i 175 (444)
T PRK14031 96 SVNLGILKFLAFEQTFKNSLTTLPMGGGKGGSDFSPRGKSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFM 175 (444)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCceeeeeCCCCCCCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhCCCCceecCcccCCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEE
Q 012750 200 LDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVI 279 (457)
Q Consensus 200 ~d~~~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVV 279 (457)
+|+|+++.++.+|++||||+.+|||.+|.++|||||++++++++++.|.+|+|+||+||||||||+++|++|.+.|+|||
T Consensus 176 ~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVV 255 (444)
T PRK14031 176 FGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIYFLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVV 255 (444)
T ss_pred HHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEE
Confidence 99999999988999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCeeeCCCCCCHHHHH---HhHhh-cCCcccCC---CCeecCCCcccccccceeeccccCCcccccccccccce-
Q 012750 280 AVSDITGAVKNADGIDIHKLL---AHKDK-TGSLKDFD---GGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAK- 351 (457)
Q Consensus 280 aVsD~~G~iynp~GLDi~~L~---~~~~~-~g~~~~~~---~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i~ak- 351 (457)
+|||++|++|||+|||+++|. +++.+ ++++.+|+ +++.++++++|+.+||||+|||++++||++||++++|+
T Consensus 256 aVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~~d~~~~~~cDIliPaAl~n~I~~~na~~l~a~g 335 (444)
T PRK14031 256 TMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVEGARPWGEKGDIALPSATQNELNGDDARQLVANG 335 (444)
T ss_pred EEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcCCcccccCCCcEEeecccccccCHHHHHHHHhcC
Confidence 999999999999999999986 55554 56787776 56788999999999999999999999999999999986
Q ss_pred --EEEecCCCCCCHHHHHHHHhCCCeEecccccccCCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012750 352 --FIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQT 429 (457)
Q Consensus 352 --iIvEgAN~p~t~~a~~iL~~rGI~viPD~laNaGGVi~S~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~ 429 (457)
+|+||||+|+||+|+++|++|||+++||+++|||||++|||||+||+++++|++|+|+++|+++|.++|+++++.+++
T Consensus 336 ~~~V~EgAN~P~t~eA~~~L~~rgI~~~PD~~aNAGGVivs~~E~~qn~~~~~W~~eeV~~~L~~~m~~~~~~v~~~~~~ 415 (444)
T PRK14031 336 VIAVSEGANMPSTPEAIKVFQDAKILYAPGKAANAGGVSVSGLEMTQNSIKLSWSSEEVDEKLKSIMKNIHEACVQYGTE 415 (444)
T ss_pred CeEEECCCCCCCCHHHHHHHHHCCcEEeChhhccCCCeeeehhhhhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c--CCCHHHHHHHHHHHHHHHHHHHcCcc
Q 012750 430 H--NCNLRMGAFTLGVNRVARATTLRGWE 456 (457)
Q Consensus 430 ~--~~~~r~aA~~~A~~rv~~a~~~rG~~ 456 (457)
+ ++++|+|||++|++||++||+.|||.
T Consensus 416 ~~~~~~~r~aA~~~a~~rva~a~~~~G~~ 444 (444)
T PRK14031 416 ADGYVNYVKGANVAGFMKVAKAMMAQGIV 444 (444)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Confidence 8 69999999999999999999999984
No 6
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=100.00 E-value=2.8e-119 Score=936.69 Aligned_cols=411 Identities=30% Similarity=0.484 Sum_probs=386.8
Q ss_pred cCCHHHHHHHHHHHHHHHcCCCh---HHHHhhcCCCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCeeeecCCC
Q 012750 46 VMNALAATSRNFRNAARILGLDS---KLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVD 122 (457)
Q Consensus 46 ~~~~~~~~~~~~~~a~~~~~~~~---~~~~~L~~p~r~~~v~~pv~~d~G~~~~f~G~rv~h~~a~GPakGGiR~~~~~~ 122 (457)
...|+|.+...++.-..+++-+| .++++|++|+|+|+|++||+||||++++|+|||||||+++||+||||||||++|
T Consensus 28 ~~ef~qa~~e~~~~~~~~~~~~~~y~~i~e~l~~Per~i~~~vp~~~D~G~v~v~~GyRVqhn~alGP~kGGlRfhp~v~ 107 (454)
T PTZ00079 28 QPEFLQAFHEVMTSLKPLFQKNPKYLGVLERLVEPERVIQFRVPWVDDKGEQRVNRGFRVQYNSALGPYKGGLRFHPSVN 107 (454)
T ss_pred ChHHHHHHHHHHHHHHHHHHhChhHHHHHHHhccCceEEEEEEEEEECCCCEEEEeeEEEEEcCCCCCCCCCEEeeCCCC
Confidence 33445555554444444444444 477899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHH
Q 012750 123 PDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDE 202 (457)
Q Consensus 123 ~~ev~~LA~~Mt~K~Al~~lP~GGaKGgI~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi~d~ 202 (457)
++|+++||++|||||||++||+|||||||.+||+.+|+.|++|+||+|+++|.++|||+.||||||+||++++|+||+++
T Consensus 108 ~~~vk~La~~mt~KnAl~gLP~GGgKGGi~~dPk~~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt~~rem~~~~~~ 187 (454)
T PTZ00079 108 LSILKFLGFEQIFKNSLTTLPMGGGKGGSDFDPKGKSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQ 187 (454)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcceeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhCCCCceecCcccCCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 012750 203 YSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 203 ~~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs 282 (457)
|+++.+..|+++||||+.+|||.+|.++|||||++++++++++.+.+++|+||+||||||||+++|++|.+.|+|||+||
T Consensus 188 y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavS 267 (454)
T PTZ00079 188 YKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMS 267 (454)
T ss_pred HHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 99999988999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeCCCCCCHHHH---HHhHhhc-CCcccCC----CCeecCCCcccccccceeeccccCCcccccccccc---cce
Q 012750 283 DITGAVKNADGIDIHKL---LAHKDKT-GSLKDFD----GGDSMEPSELLAHECDVLIPCALGGVLKRENAADV---KAK 351 (457)
Q Consensus 283 D~~G~iynp~GLDi~~L---~~~~~~~-g~~~~~~----~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i---~ak 351 (457)
|++|++|||+|||+++| .++++.+ +++.+|+ +++.++++++|+.+||||+|||++|+||.+||+++ +||
T Consensus 268 D~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~~~~~~~~~~cDI~iPcA~~n~I~~~~a~~l~~~~ak 347 (454)
T PTZ00079 268 DSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVPGKKPWEVPCDIAFPCATQNEINLEDAKLLIKNGCK 347 (454)
T ss_pred cCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEeCCcCcccCCccEEEeccccccCCHHHHHHHHHcCCe
Confidence 99999999999999988 6666654 6777765 57788999999999999999999999999999987 999
Q ss_pred EEEecCCCCCCHHHHHHHHhCCCeEecccccccCCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc-
Q 012750 352 FIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTH- 430 (457)
Q Consensus 352 iIvEgAN~p~t~~a~~iL~~rGI~viPD~laNaGGVi~S~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~- 430 (457)
+|+||||+|+|++|+++|++|||+|+||+++|||||++|||||+||.++++|++|+|+++|+++|.++|+++++.++++
T Consensus 348 ~V~EgAN~p~t~eA~~~L~~~GI~~~PD~~aNAGGV~vS~~E~~Qn~~~~~W~~eeV~~~L~~~M~~~~~~~~~~a~~~~ 427 (454)
T PTZ00079 348 LVAEGANMPTTIEATHLFKKNGVIFCPGKAANAGGVAISGLEMSQNAARLQWTAEEVDEKLREIMKSIFEACVKYAEKYG 427 (454)
T ss_pred EEEecCCCCCCHHHHHHHHHCCcEEEChhhhcCCCeeeehHHhhhhhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -CCCHHHHHHHHHHHHHHHHHHHcCcc
Q 012750 431 -NCNLRMGAFTLGVNRVARATTLRGWE 456 (457)
Q Consensus 431 -~~~~r~aA~~~A~~rv~~a~~~rG~~ 456 (457)
++++|+|||+.|+.||++||..|||+
T Consensus 428 ~~~~~r~~A~i~~~~rva~Am~~~G~~ 454 (454)
T PTZ00079 428 GKSDLVAGANIAGFLKVADSMIEQGCV 454 (454)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhcCCC
Confidence 58999999999999999999999985
No 7
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=6.6e-103 Score=803.68 Aligned_cols=387 Identities=52% Similarity=0.824 Sum_probs=364.1
Q ss_pred HHHHhhcCCCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCeeeecCCCHHHHHHHHHHHHHHHhhcCCCCCCcc
Q 012750 69 KLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAK 148 (457)
Q Consensus 69 ~~~~~L~~p~r~~~v~~pv~~d~G~~~~f~G~rv~h~~a~GPakGGiR~~~~~~~~ev~~LA~~Mt~K~Al~~lP~GGaK 148 (457)
.++.+|.-|+|+++|++||.+|+|+.+++.||||||+.+|||+||||||||+++++++++||+.||||||+.++|+||||
T Consensus 66 ~Il~~l~p~~~~i~~~~p~~~d~G~~~V~~gfRvqh~~argP~KGGIR~hpsvn~d~~k~La~~~t~K~A~tdiP~GGaK 145 (514)
T KOG2250|consen 66 AILFRLDPPERVIKFRVPIPRDDGEFEVINGFRVQHNRARGPAKGGIRYHPSVNLDIVKALAFLMTYKNALTDIPYGGAK 145 (514)
T ss_pred hhhhhcCccceeEEEEeceecCCceEEEeechhhhhhhccCcccCceEeCCcCCHHHHHHHHHHHHHHhhccCCCCCCCc
Confidence 46678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeCCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhhhhCCCCceecCcccCCCCCCCCC
Q 012750 149 GGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRE 228 (457)
Q Consensus 149 GgI~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi~d~~~~~~g~~~~~~tGkp~~~GGs~gr~ 228 (457)
|||.+||+.+|..|+||+||+|+++|.+++||++|+|+|||||++++|.|++++|++.+|++++++||||+.+|||.+|.
T Consensus 146 GGi~~dPk~~s~nEi~r~~~~f~~el~~~iGp~~DvPapdig~G~rEm~~if~~Ya~~~g~~~a~vTGK~i~~GGs~~R~ 225 (514)
T KOG2250|consen 146 GGILIDPKGKSDNEIERITRRFTDELIDIIGPDTDVPAPDIGTGPREMGWIFDEYAKTHGHWKAVVTGKPISLGGSHGRY 225 (514)
T ss_pred CccccCccccchHHHHHHHHHHHHHHHHHcCCCCCCCccccccCcchhhhhHHHHHHhhcccceeeeCCCCccCCccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhC--CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhc
Q 012750 229 AATGRGVVYATEALLAEHG--QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKT 306 (457)
Q Consensus 229 ~aTg~Gv~~~~~~~l~~~g--~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~ 306 (457)
+||||||+++++.++++++ .+++|+||+||||||||++++++|++.|+|+|+|+|++|++|||+|||+++|.++++++
T Consensus 226 ~ATG~GV~~y~e~~~~~~~~~~~~kgkr~~i~G~Gnv~~~aa~~l~~~G~kvvavsD~~G~l~np~Gid~~eL~~~~~~k 305 (514)
T KOG2250|consen 226 EATGRGVVYYVEAILNDANGKKGIKGKRVVIQGFGNVGGHAAKKLSEKGAKVVAVSDSKGVLINPDGIDIEELLDLADEK 305 (514)
T ss_pred cccchhHHHHHHHHHHhccCCCCcCceEEEEeCCCchHHHHHHHHHhcCCEEEEEEcCceeEECCCCCCHHHHHHHHHhh
Confidence 9999999999999999888 56999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCeecCCC-------cccccccceeeccccCCcccccccccccce---EEEecCCCCCCHHHHHHHHhCCCeE
Q 012750 307 GSLKDFDGGDSMEPS-------ELLAHECDVLIPCALGGVLKRENAADVKAK---FIIEAANHPTDPEADEILSKRGVTI 376 (457)
Q Consensus 307 g~~~~~~~~~~i~~~-------ell~~~~DIliPaA~~~~It~~na~~i~ak---iIvEgAN~p~t~~a~~iL~~rGI~v 376 (457)
+++.+|+++....+. .+|..+||||+|||.+|+||.+||.+++++ +|+||||+|+||+|+++|+++||++
T Consensus 306 ~~i~~f~~~~~~~~~~~~~~~~~~~v~~~DI~vPCA~qn~I~~~nA~~lvak~~~~IvEGAN~ptTpeA~~vlek~gv~i 385 (514)
T KOG2250|consen 306 KTIKSFDGAKLSYEGYIAGLPPWTLVEKCDILVPCATQNEITGENAKALVAKGCKYIVEGANMPTTPEADEVLEKAGVLI 385 (514)
T ss_pred ccccccccccccCccccccCcchhhHhhCcEEeecCccCcccHhhHHHHHhcCCcEEEecCCCCCChhHHHHHHhCCeEE
Confidence 999999987754443 677889999999999999999999999666 9999999999999999999999999
Q ss_pred ecccccccCCceehhHHHhhhcc-------cCCCCHHHHHHHHHHHHHHHHHHH----HHHHHhcC--------CCHHHH
Q 012750 377 LPDIYANSGGVTVSYFEWVQNIQ-------GFMWEEDKVNNELRRYMIRAFHNI----KGMCQTHN--------CNLRMG 437 (457)
Q Consensus 377 iPD~laNaGGVi~S~~E~~qn~~-------~~~w~~e~v~~~l~~~m~~~~~~v----~~~a~~~~--------~~~r~a 437 (457)
+||..||+|||++|||||+||++ .+.|++|.|...|.+.|...+... ++.+++++ .++...
T Consensus 386 ~Pd~~aNaGGVtvS~~E~l~nl~~~s~g~~~~~~~~e~v~~~L~~v~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~lv~g 465 (514)
T KOG2250|consen 386 IPDIYANAGGVTVSYFEWLQNLNHVSYGKLTFKWTEEKVDSLLASVQENLSRKQGKANLEPAAEFKDRIQGTSEKDLVHG 465 (514)
T ss_pred echhhccCCCeeeeHHHHHHhcccccccceeEEeehhhHHHHHHHHHHHHHHhccCcccchHHHhhhhhcCCCchHHhhh
Confidence 99999999999999999999999 689999999999999777766665 54443322 378888
Q ss_pred HHHHHHHHHHHHHHHcCc
Q 012750 438 AFTLGVNRVARATTLRGW 455 (457)
Q Consensus 438 A~~~A~~rv~~a~~~rG~ 455 (457)
|.+.++.|++++|..+|+
T Consensus 466 al~~~~~kva~ai~~~g~ 483 (514)
T KOG2250|consen 466 ALIATFNKVARAITDQGD 483 (514)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 999999999998888875
No 8
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=100.00 E-value=1e-86 Score=736.93 Aligned_cols=404 Identities=22% Similarity=0.256 Sum_probs=370.6
Q ss_pred HHhhhcCC-CCCcchhhHHHHHHhh-hcCCHHHHHHHHHHHHHHHcCCChHHHHhhcCCCeEEEEEEEEEcCCCcEEEEE
Q 012750 21 HILLFKSP-ISGFSSLLTCFESFRI-IVMNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYV 98 (457)
Q Consensus 21 ~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~L~~p~r~~~v~~pv~~d~G~~~~f~ 98 (457)
..+...+. .+++++||+|+..+.+ .+||||+.. +.+-.++++|+.++.|+.|++.+.+.+|+ | +.|+
T Consensus 419 ~~~~~~v~~~~~~~Ilr~~~~~~~~~lrTNff~~~-----k~alsFrldp~~l~~l~~P~~p~~v~fv~----G--~~f~ 487 (1002)
T PTZ00324 419 ARLKEDIRNELDRTIFSAFLSFNEHILKTNFYKTE-----KTALAFRLDPSFLSELEYPRVPYGVFLVA----G--AQFR 487 (1002)
T ss_pred HHHHhhcCChhHHHHHHHHHHHHHHHhccccccCC-----CceEEEeCCHHHHhhcCCCCceEEEEEEE----C--CcEE
Confidence 33334555 8899999999988888 799999853 33344999999999999999999999999 4 8999
Q ss_pred EEEEEeeccCCCCCCCeeeecC-----------CCHHHHHHHHHHHHHHHhhcCCCCCCcceEEeCCCCCCCH---HHHH
Q 012750 99 GFRVQHDNARGPMKGGIRYHPE-----------VDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSN---SELE 164 (457)
Q Consensus 99 G~rv~h~~a~GPakGGiR~~~~-----------~~~~ev~~LA~~Mt~K~Al~~lP~GGaKGgI~~dP~~~s~---~ele 164 (457)
|||+||+.+ ++|||||||. ++.+|+++||+||||||| +||+|||||||++||+.++. .|+|
T Consensus 488 G~hvR~~di---ARGGiR~~~s~~~edy~tn~~~~~dEv~~LA~tqt~KNa--dIP~GGaKGgi~vdp~~~~~~~~~e~e 562 (1002)
T PTZ00324 488 GFHIRFTDI---ARGGVRMIQSFKEQAYRRNKRSVFDENYNLASTQLLKNK--DIPEGGSKGTILLSSRYLNKFAQVRCQ 562 (1002)
T ss_pred EEEEecCCc---ccceeEEecCcchhhhhhcccCcHHHHHHHHHHHHHhcC--CCCCCCCeEEEEeCCcccchhhHHHHH
Confidence 999999887 8999999998 789999999999999997 99999999999999998887 8899
Q ss_pred HHHHHHHHHHhhccCCCCcc-----------cCCCCCCCHHHHHHHHHHhhhhhCCC--CceecCcccCCCCCCCCC-cc
Q 012750 165 RLTRVFTQKIHDLIGIHTDI-----------PAPDMGTNAQTMAWILDEYSKFHGHS--PAVVTGKPIDLGGSLGRE-AA 230 (457)
Q Consensus 165 ~~~r~f~~~l~~~iG~~~di-----------papDvgT~~~~m~wi~d~~~~~~g~~--~~~~tGkp~~~GGs~gr~-~a 230 (457)
+++|+|+++|.+++||..|| ||||+||+++.|+|| ++|++.+|++ ++++||||..+||+.|+. ++
T Consensus 563 r~~r~yi~aLlDli~p~~dIVd~~~~de~l~~aPD~ntta~~mdwa-~~~s~~rG~~~~~af~TGKp~~lGG~~hk~yG~ 641 (1002)
T PTZ00324 563 HAFLQYIDALLDVMLPGEKVVDHLKQEEIIFLGPDEHTTGTLMDWA-ALHAKKRGYPFWKSFTTGKSPSMGGIPHDTYGM 641 (1002)
T ss_pred HHHHHHHHHHHHhcCCCcccccccCCccccccCCCCCCCHHHHHHH-HHHHHHcCCCCCCCEEeCCCcccCCcCCCcCcc
Confidence 99999999999999999998 999999999999999 8999999985 899999999999999998 99
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEe--cChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCC
Q 012750 231 TGRGVVYATEALLAEHGQAIRDLTFVIQG--FGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGS 308 (457)
Q Consensus 231 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqG--fGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~ 308 (457)
||+||+++++++++++|+++++.||++|| |||||++.++++. +|||||+|++|++|||+|||+++|.++++++++
T Consensus 642 T~rGv~~~v~~~~~~lgid~~~~Tv~~~Ggp~GDVGgN~~lls~---~klVAv~D~~G~~~DP~GLd~~EL~rl~~~~~s 718 (1002)
T PTZ00324 642 TTRSVRAYVTGILEKLGLNEEEVTKFQTGGPDGDLGSNELLLSK---EKTVGIVDGSGVLHDPEGLNREELRRLAHHRLP 718 (1002)
T ss_pred cchhHHHHHHHHHHHcCCCccCCEEEEECCCCchHHHHHHHHhC---CEEEEEEcCCCEEECCCCCCHHHHHHHHHcCCC
Confidence 99999999999999999999999999999 9999999998864 799999999999999999999999999999889
Q ss_pred cccCC---------------------CCeec-----CCCcc---cccccceeecccc-CCccccccc--------ccccc
Q 012750 309 LKDFD---------------------GGDSM-----EPSEL---LAHECDVLIPCAL-GGVLKRENA--------ADVKA 350 (457)
Q Consensus 309 ~~~~~---------------------~~~~i-----~~~el---l~~~~DIliPaA~-~~~It~~na--------~~i~a 350 (457)
+.+|+ +++.+ .++++ +..+|||||||+. +++||++|+ .+++|
T Consensus 719 ~~~yd~~~lS~gG~~~~r~~k~i~l~~~~~i~~g~~~~~~~~l~~~~~vDlliPaggr~~~I~~~Na~~~~~~~~~~ira 798 (1002)
T PTZ00324 719 AREFDESKLSPQGFLVLTDDRDVKLPDGTIVESGLRFRNEFHLLPYSDADVFVPCGGRPRSVTLFNVGRFFDEKNGKLRF 798 (1002)
T ss_pred cccCchhhccCCCceeecccccccCCccceeccccccchhhccccCCCccEEEECCCCcCccCHHHHhhhhhccccCcee
Confidence 98653 22222 23444 4789999999998 999999999 78999
Q ss_pred eEEEecCCCCCCHHHHHHHHhCCCeEecccccccCCceehhHHHhhhcc------------------cCCCC--HHHHHH
Q 012750 351 KFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQ------------------GFMWE--EDKVNN 410 (457)
Q Consensus 351 kiIvEgAN~p~t~~a~~iL~~rGI~viPD~laNaGGVi~S~~E~~qn~~------------------~~~w~--~e~v~~ 410 (457)
|+||||||+|+||+|+.+|++|||+++||+++|+|||+||||||+||++ +.+|+ .++|.+
T Consensus 799 kvIvEGANlpiT~eAr~~L~~~Gv~IipD~laNsGGV~~S~~Evl~~l~l~d~ef~~~m~~~~~~~~~~f~~~yv~eV~~ 878 (1002)
T PTZ00324 799 KIIVEGANLFITQDARLALEECGVILFKDASANKGGVTSSSLEVLAALALSDEEFAEHMCVKDATDAPEFYKKYVKEILD 878 (1002)
T ss_pred EEEEECCCCCCCHHHHHHHHHCCCEEcCcchhcCCCcEeeHHHHHhccccchhhhhhhhcccccCCccchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998 78899 899999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 012750 411 ELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVN 444 (457)
Q Consensus 411 ~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~ 444 (457)
+|+++|..+|+.||+.+++.++++|+||..+..+
T Consensus 879 ~L~~~a~~ef~~i~~~~~~~~~~~r~asd~lS~~ 912 (1002)
T PTZ00324 879 RIEENARLEFNAIWREELRTGKPRCLLADVLSRK 912 (1002)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999987643
No 9
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=100.00 E-value=8.2e-72 Score=546.37 Aligned_cols=241 Identities=32% Similarity=0.480 Sum_probs=231.4
Q ss_pred cCcccCCCCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCC
Q 012750 215 TGKPIDLGGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGI 294 (457)
Q Consensus 215 tGkp~~~GGs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GL 294 (457)
||||+.+|||.||+++|||||++++++++++++.+++|+||+||||||||+++|++|.+.|+|||+|||++|++|||+||
T Consensus 1 TGKp~~~GGs~gR~~aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gl 80 (254)
T cd05313 1 TGKGLSWGGSLIRPEATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGF 80 (254)
T ss_pred CCCCCcCCCCCCCCchhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHH---HHhHhhcCC-cccCC----CCeecCCCcccccccceeeccccCCcccccccccc---cceEEEecCCCCCCH
Q 012750 295 DIHKL---LAHKDKTGS-LKDFD----GGDSMEPSELLAHECDVLIPCALGGVLKRENAADV---KAKFIIEAANHPTDP 363 (457)
Q Consensus 295 Di~~L---~~~~~~~g~-~~~~~----~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i---~akiIvEgAN~p~t~ 363 (457)
|+++| .++++++++ +.+|+ +++.++++++|+.+||||+|||++++||++|++++ +||+|+||||+|+||
T Consensus 81 d~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~~~~~DIliPcAl~~~I~~~na~~i~~~~ak~I~EgAN~p~t~ 160 (254)
T cd05313 81 TGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPWEVPCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGANMPCTA 160 (254)
T ss_pred CHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchhcCCCcEEEeccccccCCHHHHHHHHHcCCEEEEeCCCCCCCH
Confidence 99998 556666665 45553 67889999999999999999999999999999999 899999999999999
Q ss_pred HHHHHHHhCCCeEecccccccCCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCHHHHHHHH
Q 012750 364 EADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHN--CNLRMGAFTL 441 (457)
Q Consensus 364 ~a~~iL~~rGI~viPD~laNaGGVi~S~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~--~~~r~aA~~~ 441 (457)
+|+++|++|||+|+||+++|+||||+|||||+||+++++|++|+|+++|+++|.++|+++++.+++++ ++||+|||++
T Consensus 161 ~a~~~L~~rGI~vvPD~laNaGGVivs~~E~~qn~~~~~w~~e~V~~~l~~~m~~~~~~v~~~a~~~~~~~~lr~aA~~~ 240 (254)
T cd05313 161 EAIEVFRQAGVLFAPGKAANAGGVAVSGLEMSQNSQRLSWTAEEVDAKLKDIMKNIHDACAETAKKYGDPPDLVAGANIA 240 (254)
T ss_pred HHHHHHHHCCcEEECchhhcCCCeeeeHHHhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHHHHHcCc
Q 012750 442 GVNRVARATTLRGW 455 (457)
Q Consensus 442 A~~rv~~a~~~rG~ 455 (457)
|++||+++|+.||+
T Consensus 241 a~~rv~~a~~~rG~ 254 (254)
T cd05313 241 GFLKVADAMLAQGV 254 (254)
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999999995
No 10
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=100.00 E-value=2.4e-64 Score=492.85 Aligned_cols=233 Identities=49% Similarity=0.845 Sum_probs=223.7
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHhCCC-CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHH
Q 012750 222 GGSLGREAATGRGVVYATEALLAEHGQA-IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLL 300 (457)
Q Consensus 222 GGs~gr~~aTg~Gv~~~~~~~l~~~g~~-l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~ 300 (457)
|||.+|.++|||||++++++++++++.+ ++|+||+||||||||+++|++|++.|++||+|||++|++|||+|||+++|+
T Consensus 1 GGs~~~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~ 80 (244)
T PF00208_consen 1 GGSGGRSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELL 80 (244)
T ss_dssp TCHTTTTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHH
T ss_pred CCCCCCCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHH
Confidence 7999999999999999999999998887 999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhcCC-cccCC-----CCeecCCC-cccccccceeeccccCCcccccccc-ccc--ceEEEecCCCCCCHHHHHHHH
Q 012750 301 AHKDKTGS-LKDFD-----GGDSMEPS-ELLAHECDVLIPCALGGVLKRENAA-DVK--AKFIIEAANHPTDPEADEILS 370 (457)
Q Consensus 301 ~~~~~~g~-~~~~~-----~~~~i~~~-ell~~~~DIliPaA~~~~It~~na~-~i~--akiIvEgAN~p~t~~a~~iL~ 370 (457)
+++++.+. +..|+ +.+.++++ ++|+.+||||+|||++++||++|++ .++ ||+||||||+|+||+|+++|+
T Consensus 81 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~A~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~~L~ 160 (244)
T PF00208_consen 81 RIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPCALGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADEILR 160 (244)
T ss_dssp HHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEESSSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHHHHH
T ss_pred HHHHHhCCcccccccccccceeEeccccccccccccEEEEcCCCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHHHHH
Confidence 99999888 98887 56778874 9999999999999999999999999 999 999999999999999999999
Q ss_pred hCCCeEecccccccCCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 012750 371 KRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVARAT 450 (457)
Q Consensus 371 ~rGI~viPD~laNaGGVi~S~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~rv~~a~ 450 (457)
+|||+|+||+++|+||||+||+||+||+++++|+++++.++++++|.+++++|++.|+++++++|+|||++|++||+++|
T Consensus 161 ~rGI~viPD~~aNaGGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~~~aA~~~A~~rv~~a~ 240 (244)
T PF00208_consen 161 ERGILVIPDFLANAGGVIVSYFEWLQNLQGLFWTEEEVFEKLEEIMDRAFKRVLERAEEEGISLRQAAYILAFERVAAAM 240 (244)
T ss_dssp HTT-EEE-HHHHTTHHHHHHHHHHHHHHHTSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHH
T ss_pred HCCCEEEcchhhcCCCeEeehhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcC
Q 012750 451 TLRG 454 (457)
Q Consensus 451 ~~rG 454 (457)
+.||
T Consensus 241 ~~rG 244 (244)
T PF00208_consen 241 KLRG 244 (244)
T ss_dssp HHTT
T ss_pred HhcC
Confidence 9998
No 11
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=100.00 E-value=3.3e-61 Score=466.32 Aligned_cols=226 Identities=53% Similarity=0.873 Sum_probs=221.9
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHH
Q 012750 222 GGSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLA 301 (457)
Q Consensus 222 GGs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~ 301 (457)
|||.+|+++|||||++++++++++++.+++++||+||||||||++++++|.++|++||+|+|++|++|||+|||+++|++
T Consensus 1 gG~~~~~~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~ 80 (227)
T cd01076 1 GGSLGREEATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLA 80 (227)
T ss_pred CCCCCCCccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHH
Confidence 79999999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred hHhhcCCcccCCCCeecCCCcccccccceeeccccCCcccccccccccceEEEecCCCCCCHHHHHHHHhCCCeEecccc
Q 012750 302 HKDKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIY 381 (457)
Q Consensus 302 ~~~~~g~~~~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t~~a~~iL~~rGI~viPD~l 381 (457)
++++++++.+|++++.++++++++.+||||+|||++++||++|+++++||+|+||||+|+||+|+++|++|||+|+||++
T Consensus 81 ~~~~~g~l~~~~~~~~~~~~~i~~~~~Dvlip~a~~~~i~~~~~~~l~a~~I~egAN~~~t~~a~~~L~~rGi~~~PD~~ 160 (227)
T cd01076 81 YKKEHGSVLGFPGAERITNEELLELDCDILIPAALENQITADNADRIKAKIIVEAANGPTTPEADEILHERGVLVVPDIL 160 (227)
T ss_pred HHHhcCCcccCCCceecCCccceeecccEEEecCccCccCHHHHhhceeeEEEeCCCCCCCHHHHHHHHHCCCEEEChHH
Confidence 99999999999988888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 012750 382 ANSGGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVA 447 (457)
Q Consensus 382 aNaGGVi~S~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~rv~ 447 (457)
+|+||||+||+||+||++++.|++++|.+++++.|.+++.++++.++++++++|++||.+|++||.
T Consensus 161 aNaGGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~i~~~~~~v~~~a~~~~~~~~~aA~~~a~~rl~ 226 (227)
T cd01076 161 ANAGGVTVSYFEWVQNLQGFYWDEEEVNSRLETKMREAFEAVLETAEKYGVDLRTAAYVLALERVA 226 (227)
T ss_pred hcCcchhhhHHHHhhhhccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999986
No 12
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=100.00 E-value=5.2e-60 Score=455.06 Aligned_cols=217 Identities=39% Similarity=0.639 Sum_probs=211.7
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCc
Q 012750 230 ATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSL 309 (457)
Q Consensus 230 aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~ 309 (457)
||||||++++++++++++.+++|+||+||||||||+++|++|.++|+++|+|||++|++||| |||++++++++++.+++
T Consensus 1 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~-Gld~~~l~~~~~~~~~~ 79 (217)
T cd05211 1 ATGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDP-GITTEELINYAVALGGS 79 (217)
T ss_pred CchhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECC-CCCHHHHHHHHHhhCCc
Confidence 69999999999999999989999999999999999999999999999999999999999999 99999999999888889
Q ss_pred ccCCCCeecCCCcccccccceeeccccCCcccccccccccceEEEecCCCCCCHHHHHHHHhCCCeEecccccccCCcee
Q 012750 310 KDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTV 389 (457)
Q Consensus 310 ~~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t~~a~~iL~~rGI~viPD~laNaGGVi~ 389 (457)
..|+.++.+++++++..+||||+|||++|+||++|+++++||+|+||||+|+|++++++|++|||+|+||+++|+|||++
T Consensus 80 ~~~~~~~~~~~~~l~~~~~DVlipaA~~~~i~~~~a~~l~a~~V~e~AN~p~t~~a~~~L~~~Gi~v~Pd~~~NaGGvi~ 159 (217)
T cd05211 80 ARVKVQDYFPGEAILGLDVDIFAPCALGNVIDLENAKKLKAKVVAEGANNPTTDEALRILHERGIVVAPDIVANAGGVIV 159 (217)
T ss_pred cccCcccccCcccceeccccEEeeccccCccChhhHhhcCccEEEeCCCCCCCHHHHHHHHHCCcEEEChHHhcCCCeEe
Confidence 88887777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 012750 390 SYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVA 447 (457)
Q Consensus 390 S~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~rv~ 447 (457)
|||||+||.++++|++++|.++++++|.++++++++.++++++++|+|||++|++||+
T Consensus 160 s~~E~~q~~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~a~~rva 217 (217)
T cd05211 160 SYFEWVQNLQRLSWDAEEVRSKLEQVMTDIHNGVFAISERDGVTMRAAANILAFERIA 217 (217)
T ss_pred EHHHhcCCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999984
No 13
>PF02812 ELFV_dehydrog_N: Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; InterPro: IPR006097 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the dimerisation region of these enzymes.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 2BMA_C 1C1D_B 1BXG_A 1BW9_B 1C1X_A 2YFQ_B 3R3J_D 1V9L_C 1B26_C 2TMG_B ....
Probab=100.00 E-value=4.1e-47 Score=338.53 Aligned_cols=130 Identities=53% Similarity=0.890 Sum_probs=124.5
Q ss_pred CCeEEEEEEEEEcCCCcEEEEEEEEEEeeccCCCCCCCeeeecCCCHHHHHHHHHHHHHHHhhcCCCCCCcceEEeCCCC
Q 012750 77 PFREIKVECTIPKDDGSLVSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPK 156 (457)
Q Consensus 77 p~r~~~v~~pv~~d~G~~~~f~G~rv~h~~a~GPakGGiR~~~~~~~~ev~~LA~~Mt~K~Al~~lP~GGaKGgI~~dP~ 156 (457)
|+|+++|++||+||||+.+.|+|||||||+++||+||||||||++|.+|+++||++||||||++++|||||||||.+||+
T Consensus 1 pe~v~~~~~~~~~d~g~~~~~~g~~v~h~~~~GPa~GGiR~~~~~s~~ev~~LA~~MT~K~Al~~lp~GGaKggI~~dp~ 80 (131)
T PF02812_consen 1 PERVIQVRVPVVMDDGPITGLRGYRVQHSTARGPAKGGIRMHPYVSEEEVLRLARGMTYKCALAGLPFGGAKGGIKIDPK 80 (131)
T ss_dssp -SEEEEEEEEEEETTSCEEEEEEEEEEEE-SSSSEEEEEEEETTSSHHHHHHHHHHHHHHHHHTTSS-EEEEEEEESSGG
T ss_pred CCEEEEEEEEEEeCCCCEEEEEEEEEEEcCCCCCCCCCeEEecCCCHHHHHHHHHHHHhhhhhccCCCCceeEEeecCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhhh
Q 012750 157 ELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKF 206 (457)
Q Consensus 157 ~~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi~d~~~~~ 206 (457)
++|..|+|+++|+|+++|.+++|+..|||||||||+++||+||+++|+++
T Consensus 81 ~~s~~e~e~l~r~f~~~l~~~i~~~~~i~a~Dvgt~~~dm~~i~~~~~~~ 130 (131)
T PF02812_consen 81 DLSDNERERLTRRFGRALSPFIGPGRDIPAPDVGTGERDMAWIADEYRRV 130 (131)
T ss_dssp GS-HHHHHHHHHHHHHHHGGGSBTTTEEEEBBTTBSHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHhccCcEEECCcCCCCHHHHHHHHHhchhc
Confidence 99999999999999999999999999999999999999999999999864
No 14
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=100.00 E-value=2.4e-43 Score=335.38 Aligned_cols=195 Identities=28% Similarity=0.419 Sum_probs=177.7
Q ss_pred CcchHHHHHHHHHHHHHHh--CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhh
Q 012750 228 EAATGRGVVYATEALLAEH--GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDK 305 (457)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~--g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~ 305 (457)
+.+||+||+++++++++++ +.+++|++|+|||||+||+++++.|.+.|++|+ ++|.+ .+++.++++.
T Consensus 2 s~aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vv-v~D~~----------~~~~~~~~~~ 70 (200)
T cd01075 2 SPPTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLI-VADIN----------EEAVARAAEL 70 (200)
T ss_pred CChhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEcCC----------HHHHHHHHHH
Confidence 5689999999999999976 778999999999999999999999999999999 88864 4555555543
Q ss_pred cCCcccCCCCeecCCCcccccccceeeccccCCcccccccccccceEEEecCCCCCC-HHHHHHHHhCCCeEeccccccc
Q 012750 306 TGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPTD-PEADEILSKRGVTILPDIYANS 384 (457)
Q Consensus 306 ~g~~~~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t-~~a~~iL~~rGI~viPD~laNa 384 (457)
| +.+.+++++++..+|||++|||++++||++|+++++||+|+||||+|+| ++++++|+++||+|+||+++|+
T Consensus 71 ------~-g~~~v~~~~l~~~~~Dv~vp~A~~~~I~~~~~~~l~~~~v~~~AN~~~~~~~~~~~L~~~Gi~~~Pd~~~Na 143 (200)
T cd01075 71 ------F-GATVVAPEEIYSVDADVFAPCALGGVINDDTIPQLKAKAIAGAANNQLADPRHGQMLHERGILYAPDYVVNA 143 (200)
T ss_pred ------c-CCEEEcchhhccccCCEEEecccccccCHHHHHHcCCCEEEECCcCccCCHhHHHHHHHCCCEEeCceeeeC
Confidence 2 3556777889988999999999999999999999999999999999999 9999999999999999999999
Q ss_pred CCceehhHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 012750 385 GGVTVSYFEWVQNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGVNRVA 447 (457)
Q Consensus 385 GGVi~S~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~rv~ 447 (457)
|||++||+||+|+. +++++++++.+ .+++.++++.+++++++||+|||.+|++||.
T Consensus 144 GGv~~~~~e~~~~~------~~~~~~~~~~~-~~~~~~v~~~a~~~~~~~~~aA~~~a~~r~~ 199 (200)
T cd01075 144 GGLINVADELYGGN------EARVLAKVEAI-YDTLLEIFAQAKQDGITTLEAADRMAEERIA 199 (200)
T ss_pred cCceeehhHHhCCc------HHHHHHHHHHH-HHHHHHHHHHHHHhCcCHHHHHHHHHHHHhc
Confidence 99999999999863 67899999985 8999999999999999999999999999985
No 15
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=100.00 E-value=2.3e-39 Score=374.83 Aligned_cols=420 Identities=22% Similarity=0.223 Sum_probs=324.8
Q ss_pred hHHHHHHHHHHhhhcCC-CCCcchhhHHHHHHhh-hcCCHHHHHH-HHHHHHHHHcCCChHHHHhhcC--CCeEEEEEEE
Q 012750 12 SQKLIHSFIHILLFKSP-ISGFSSLLTCFESFRI-IVMNALAATS-RNFRNAARILGLDSKLERSLLI--PFREIKVECT 86 (457)
Q Consensus 12 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~L~~--p~r~~~v~~p 86 (457)
.++.++..|...|.++. +|++++||+|...+.+ .+||||+... .+-+.+. .|+++|..++.+.. |.++|.|+-|
T Consensus 643 ~~~~~~~~i~~~l~~V~~l~~drILr~~~~~i~atlRTNff~~~~~g~~k~~l-sfKldp~~l~~~p~P~P~~eifV~s~ 721 (1528)
T PF05088_consen 643 AQEELEEEIEEALDEVASLDEDRILRRFLNLIEATLRTNFFQPDEDGQPKPAL-SFKLDPSFLPDLPEPRPYFEIFVYSP 721 (1528)
T ss_pred HHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHhcCcccccCccCCCCCeE-EEEEcHHHcCCCCCCCCcEEEEEECC
Confidence 56678999999999998 9999999999988888 7999999742 2223333 48999999988775 7778877754
Q ss_pred EEcCCCcEEEEEEEEEEe-eccCCCCCCCeeeecCCC--HHHHHHHHHHHHHHHhhcCCCCCCcceEEeCCCCCC--CH-
Q 012750 87 IPKDDGSLVSYVGFRVQH-DNARGPMKGGIRYHPEVD--PDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKEL--SN- 160 (457)
Q Consensus 87 v~~d~G~~~~f~G~rv~h-~~a~GPakGGiR~~~~~~--~~ev~~LA~~Mt~K~Al~~lP~GGaKGgI~~dP~~~--s~- 160 (457)
-|+|+|+++ ..+| ||+||+.... .+||+.|+++|+.||+ .||-||||||++++.... +.
T Consensus 722 ---------~~eGvHLR~g~VAR----GGlRwSdR~eDfRtEvlgL~kaQ~vKNa--vIvp~GsKGgfv~k~~~~~~~r~ 786 (1528)
T PF05088_consen 722 ---------RFEGVHLRFGDVAR----GGLRWSDRPEDFRTEVLGLVKAQQVKNA--VIVPVGSKGGFVVKQLPDPADRD 786 (1528)
T ss_pred ---------ceEEEEcccccccc----CcccccCCHHHHHHHHHHHHHHHHhcCC--cccCCCCceeEEecCCCCCCCHH
Confidence 469999998 5666 9999975432 5799999999999995 557799999999864432 32
Q ss_pred ---HHHHHHHHHHHHHHhhcc---------CC------CCc----ccCCCCCCCHHHHHHHHHHhhhhhCCCCceecCcc
Q 012750 161 ---SELERLTRVFTQKIHDLI---------GI------HTD----IPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKP 218 (457)
Q Consensus 161 ---~ele~~~r~f~~~l~~~i---------G~------~~d----ipapDvgT~~~~m~wi~d~~~~~~g~~~~~~tGkp 218 (457)
.|...+++.|+++|.++. .| +.| |.|+|.||.. +.=++.+.+.- .|+|.|+.
T Consensus 787 ~~~~~~~~~y~~fi~~lLd~TDN~~~g~vv~p~~vv~~D~dDpYLVVAADKGTAt--fSD~AN~ia~~----~gfWLgDA 860 (1528)
T PF05088_consen 787 AWQAEGIACYKTFIRALLDLTDNLVDGKVVPPPDVVRYDGDDPYLVVAADKGTAT--FSDIANEIAAE----YGFWLGDA 860 (1528)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCccCCCcceeecCCCCCceEeecCCCcch--HHHHHHHHHHH----cCCCcchh
Confidence 345678899999998773 22 111 6799999962 22122222222 35899999
Q ss_pred cCCCCCCCCC----cchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHH--HHHHHCCCEEEEEECCCCeeeCCC
Q 012750 219 IDLGGSLGRE----AATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAA--RLIHERGGKVIAVSDITGAVKNAD 292 (457)
Q Consensus 219 ~~~GGs~gr~----~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a--~~L~~~GakVVaVsD~~G~iynp~ 292 (457)
+.+|||.|++ +.|++|.|.+++.+++++|+++....|.|+|.|++++.+. .+|..+..|+||..|+.+.+.||+
T Consensus 861 FASGGS~GYDHK~mGITArGAWesvkrHFrelg~D~q~~~fTvvGiGDMsGDVFGNGMLlS~~irLvaAF~H~hIFiDP~ 940 (1528)
T PF05088_consen 861 FASGGSAGYDHKKMGITARGAWESVKRHFRELGIDIQTDPFTVVGIGDMSGDVFGNGMLLSRHIRLVAAFNHRHIFIDPD 940 (1528)
T ss_pred hhcCCcCCCCchhhccchhhHHHHHHHHHHHhCCCcCCCceEEEEecCCCccccccchhcccceeEEEecCcceeecCcC
Confidence 9999999987 7999999999999999999999999999999999999998 489999999999999999999999
Q ss_pred CCCHHH----HHHhHhh-cCCcccCC------------------------------CCeecCCCc----ccccccceeec
Q 012750 293 GIDIHK----LLAHKDK-TGSLKDFD------------------------------GGDSMEPSE----LLAHECDVLIP 333 (457)
Q Consensus 293 GLDi~~----L~~~~~~-~g~~~~~~------------------------------~~~~i~~~e----ll~~~~DIliP 333 (457)
. |++. -+++++- +.+|++|. ....++|+| +|..|+|+|+-
T Consensus 941 P-D~~~Sf~ER~RLF~lprSsW~DYd~~lIS~GGGVf~R~aKsI~lS~e~r~~lgi~~~~~tp~eLi~aiL~apVDLlwn 1019 (1528)
T PF05088_consen 941 P-DPAASFAERKRLFELPRSSWADYDKSLISKGGGVFSRSAKSIPLSPEMRAALGIEKDSLTPDELIRAILKAPVDLLWN 1019 (1528)
T ss_pred C-ChhhhHHHHHHHhcCCCCChhhcCHHHhCCCCceeecccCCCCCCHHHHHHhCCCCCccCHHHHHHHHhcCccceEec
Confidence 7 5443 3334442 33677774 111344455 56889999999
Q ss_pred cccCCccccc-----------------ccccccceEEEecCCCCCCHHHHHHHHhCCCeEecccccccCCceehhHHHhh
Q 012750 334 CALGGVLKRE-----------------NAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQ 396 (457)
Q Consensus 334 aA~~~~It~~-----------------na~~i~akiIvEgAN~p~t~~a~~iL~~rGI~viPD~laNaGGVi~S~~E~~q 396 (457)
..++..|-.. |+.+++||+|+||+|..+|+.++-.+..+|..+..|++.||+||-||.+|..-
T Consensus 1020 GGIGTYVKas~Es~~~vgDkaND~vRV~g~~lrakVvgEGgNLG~TQ~gRiE~a~~GGriNtDaiDNSaGVd~SDhEVNi 1099 (1528)
T PF05088_consen 1020 GGIGTYVKASTESHADVGDKANDAVRVNGSELRAKVVGEGGNLGLTQRGRIEYALNGGRINTDAIDNSAGVDCSDHEVNI 1099 (1528)
T ss_pred CCccceEecCCCcccccccccCcceeechHHceEEEEecccccccchHHHHHHHHcCCccchhhhcccCCCcCccchhhH
Confidence 9998766432 56779999999999999999999999999999999999999999999999865
Q ss_pred hc------ccCCCCHHHHHHHHHHHHHHHHHHHHHHH---Hhc--CC-CHHHHHHHHHHHHHHHHHHHcCc
Q 012750 397 NI------QGFMWEEDKVNNELRRYMIRAFHNIKGMC---QTH--NC-NLRMGAFTLGVNRVARATTLRGW 455 (457)
Q Consensus 397 n~------~~~~w~~e~v~~~l~~~m~~~~~~v~~~a---~~~--~~-~~r~aA~~~A~~rv~~a~~~rG~ 455 (457)
.+ .....+.++-++.|++ |++.+.+++-.- |.. .+ ..+...+.-...|+.+.++.+|.
T Consensus 1100 KIll~~~~~~g~lt~~~Rn~lL~~-mtdeV~~lVL~~N~~Q~~alsl~~~~~~~~~~~~~r~~~~Le~~g~ 1169 (1528)
T PF05088_consen 1100 KILLNSLVRAGDLTRKERNKLLAS-MTDEVAELVLRDNYRQTLALSLAERRAAERLEEHQRLIERLEREGR 1169 (1528)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCC
Confidence 43 2334588999999998 888887654322 221 22 23344556667788888888774
No 16
>COG2902 NAD-specific glutamate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-39 Score=362.98 Aligned_cols=391 Identities=22% Similarity=0.221 Sum_probs=299.8
Q ss_pred hHHHHHHHHHHhhhcCC-CCCcchhhHHHHHHhh-hcCCHHHHH-HHHHHHHHHHcCCChHHHHhhcC--CCeEEEEEEE
Q 012750 12 SQKLIHSFIHILLFKSP-ISGFSSLLTCFESFRI-IVMNALAAT-SRNFRNAARILGLDSKLERSLLI--PFREIKVECT 86 (457)
Q Consensus 12 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~L~~--p~r~~~v~~p 86 (457)
+++.+...|...|..++ +|+||+||++...+.+ .+||+||.- ..+-+.+.+ |+++|..++-|.. |.++|.|+-|
T Consensus 705 ~~~al~~~i~~al~~v~~ld~DrILR~~~~~i~atLRTNyfq~~~~~~~k~~lS-FK~dps~i~~lp~P~Py~eIFVyg~ 783 (1592)
T COG2902 705 AAEALLDKIEEALDAVPSLDEDRILRRFVNLVKATLRTNYFQLDGHGTPKVALS-FKFDPSLIDELPYPRPYREIFVYGP 783 (1592)
T ss_pred hHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhceeeecCCCCcceeEE-EEeChhhcCCCCCCCcceEEEEEcC
Confidence 56778888888899999 9999999999988888 799999922 333344444 9999999998875 7899999854
Q ss_pred EEcCCCcEEEEEEEEEEe-eccCCCCCCCeeeecCCC---HHHHHHHHHHHHHHHhhcCCCCCCcceEEeCCC--CCCCH
Q 012750 87 IPKDDGSLVSYVGFRVQH-DNARGPMKGGIRYHPEVD---PDEVNALAQLMTWKTAVADIPYGGAKGGIGCSP--KELSN 160 (457)
Q Consensus 87 v~~d~G~~~~f~G~rv~h-~~a~GPakGGiR~~~~~~---~~ev~~LA~~Mt~K~Al~~lP~GGaKGgI~~dP--~~~s~ 160 (457)
-|+|+|.++ ..+| ||+||+ +.. .+|++.|++.|+.|||+ ||-+|||||+.+.+ ..-+.
T Consensus 784 ---------~vEGvHLRFg~VAR----GGLRws-DR~~D~rtEvlgLvKAQqvKNav--IvpvGAKGgf~~k~lp~g~~R 847 (1592)
T COG2902 784 ---------EVEGVHLRFGPVAR----GGLRWS-DRNQDFRTEVLGLVKAQQVKNAV--IVPVGAKGGFLLKRLPTGGDR 847 (1592)
T ss_pred ---------cceEEEeecccccc----cccccc-ccchhHHHHHHHHHHHHHhcCCc--ccccCCcceEecccCCCCCch
Confidence 569999998 4455 999999 444 57999999999999965 45689999999875 33344
Q ss_pred HH----HHHHHHHHHHHHhhcc-----C----C------CCc----ccCCCCCCCH-HHHHHHHHHhhhhhCCCCceecC
Q 012750 161 SE----LERLTRVFTQKIHDLI-----G----I------HTD----IPAPDMGTNA-QTMAWILDEYSKFHGHSPAVVTG 216 (457)
Q Consensus 161 ~e----le~~~r~f~~~l~~~i-----G----~------~~d----ipapDvgT~~-~~m~wi~d~~~~~~g~~~~~~tG 216 (457)
.| -.++++.|++.|.+++ + | +.| +.|||.||.. .|.+-. .++ ..+|+-|
T Consensus 848 D~i~~eg~~~Yk~Fi~~LlditDnii~~~vvpP~~vvr~d~dDpyLvVaaDKGTAtFsD~AN~---vA~----~~~fwl~ 920 (1592)
T COG2902 848 DAIFAEGIACYKAFISGLLDITDNIIDDQVVPPADVVRLDGDDPYLVVAADKGTATFSDIANS---VAR----EYGFWLG 920 (1592)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhcCCcCCChhhhhcCCCCCeEEEecCCCcccHHHHHHH---HHH----HhCCChh
Confidence 44 3467888998886553 1 1 111 6799999963 122211 111 2357889
Q ss_pred cccCCCCCCCCC----cchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHH--HHHHHCCCEEEEEECCCCeeeC
Q 012750 217 KPIDLGGSLGRE----AATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAA--RLIHERGGKVIAVSDITGAVKN 290 (457)
Q Consensus 217 kp~~~GGs~gr~----~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a--~~L~~~GakVVaVsD~~G~iyn 290 (457)
|.+..|||.|.+ ++|++|+|++++.+++.+|.+++...|.++|.|.+.+.+. .+|..+..++||+.|++|.++|
T Consensus 921 DAFaSGgS~GydHK~mGITarGaweaVkrhFrelg~d~Q~~~fTvvgiGdmsGDVfgNgMLLS~~irLiAAfDhrhIFiD 1000 (1592)
T COG2902 921 DAFASGGSAGYDHKKMGITARGAWEAVKRHFRELGLDTQTSPFTVVGIGDMSGDVFGNGMLLSKHIRLIAAFDHRHIFID 1000 (1592)
T ss_pred hhhhcCCCCCCCccccccchhhHHHHHHHHHHHhcccCCCCceEEEeeCCCCccccccceeccccceeeEEecCCceeeC
Confidence 999999998876 7999999999999999999999999999999766555555 5777888899999999999999
Q ss_pred C-CCCCHHHHHH---hHhhcCCcccCCC------C------------------------eecCCCc----ccccc-----
Q 012750 291 A-DGIDIHKLLA---HKDKTGSLKDFDG------G------------------------DSMEPSE----LLAHE----- 327 (457)
Q Consensus 291 p-~GLDi~~L~~---~~~~~g~~~~~~~------~------------------------~~i~~~e----ll~~~----- 327 (457)
| -++|...+.+ ....+.+|.+|.. + +.++|.| +|..|
T Consensus 1001 P~pd~a~S~~eR~RlF~lpRSsw~DYD~s~iS~gG~v~srs~K~I~Lspe~~~~lgi~~~~~~P~elitAILKapvDLLw 1080 (1592)
T COG2902 1001 PNPDLAVSFAERKRLFALPRSSWSDYDASKISKGGGVVSRSAKAITLSPEVIAALGIDKTELAPNELITAILKAPVDLLW 1080 (1592)
T ss_pred CCCCccccHHHHHHHhcCCcCchhhcchhhcCCCCeEEEeeccccCCCHHHHHHhCCCccccChHHHHHHHHcCchhhhc
Confidence 9 5677776665 3445667877741 1 1122333 33433
Q ss_pred ---cceeeccccC-Cccccccc--------ccccceEEEecCCCCCCHHHHHHHHhCCCeEecccccccCCceehhHHHh
Q 012750 328 ---CDVLIPCALG-GVLKRENA--------ADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWV 395 (457)
Q Consensus 328 ---~DIliPaA~~-~~It~~na--------~~i~akiIvEgAN~p~t~~a~~iL~~rGI~viPD~laNaGGVi~S~~E~~ 395 (457)
.|.+|||+.+ |.++.+|| .+++||+|+||||..+|+.++-.+..+|..+..|+++|+|||.||.+|.+
T Consensus 1081 ~GGIgTYVka~~etnA~vgDrANd~irv~g~e~raKvIgEGaNLgvTQ~gRief~~~Ggr~ntDaidNsaGVd~SD~EVn 1160 (1592)
T COG2902 1081 NGGIGTYVKASGETNADVGDRANDAIRVNGEEVRAKVIGEGANLGVTQRGRIEFALAGGRINTDAIDNSAGVDCSDHEVN 1160 (1592)
T ss_pred cCCCceeEecCCCccchhhcccchhhccccceeceeEEeecccccccchhHHHHHHcCCeecchhhcccCCCcccchhhh
Confidence 5667888876 56666554 45799999999999999999999999999999999999999999999998
Q ss_pred hhcc------cCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 012750 396 QNIQ------GFMWEEDKVNNELRRYMIRAFHNIKGMC 427 (457)
Q Consensus 396 qn~~------~~~w~~e~v~~~l~~~m~~~~~~v~~~a 427 (457)
..+. ....+.++.+..|.. |++.+.+++..-
T Consensus 1161 iKIal~~a~~~g~l~~~~Rn~Llas-mtdeV~~lVl~n 1197 (1592)
T COG2902 1161 IKIALNSAVFAGKLTRGERNALLAS-MTDEVASLVLRN 1197 (1592)
T ss_pred hHHhhhhhhhcCCcchhhHHHHHHH-HHHHHHHHHHhh
Confidence 6652 335567888888888 898888876543
No 17
>smart00839 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase. Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction.
Probab=99.96 E-value=3.6e-30 Score=220.54 Aligned_cols=100 Identities=43% Similarity=0.645 Sum_probs=95.9
Q ss_pred cceeeccccCCcccccccccccceEEEecCCCCCCHHHHHHHHhCCCeEecccccccCCceehhHHHhhhcccCCCCHHH
Q 012750 328 CDVLIPCALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVTVSYFEWVQNIQGFMWEEDK 407 (457)
Q Consensus 328 ~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t~~a~~iL~~rGI~viPD~laNaGGVi~S~~E~~qn~~~~~w~~e~ 407 (457)
||||+|||++++||++|+++++||+|+||||+|+|++++++|++|||+|+||+++|+|||++||+||.|+++. ++++
T Consensus 3 ~DI~~PcA~~~~I~~~~a~~l~a~~V~egAN~~~t~~a~~~L~~rGi~~~PD~~~NaGGvi~s~~E~~~~~~~---~~e~ 79 (102)
T smart00839 3 CDIFIPCALQNVINEANANRLGAKIIAEGANMPLTDEADDILEDRGVLYAPDFAANAGGVIVSALEMLQNLAR---TAEE 79 (102)
T ss_pred cCEEEeCCCcCcCCHHHHHHcCCeEEEecCCCCCCHHHHHHHHHCCCEEcCcceecCCCEEeehhhhhcccCC---CHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998764 8899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 012750 408 VNNELRRYMIRAFHNIKGMCQTH 430 (457)
Q Consensus 408 v~~~l~~~m~~~~~~v~~~a~~~ 430 (457)
+.+++.++|.+++.++++.|+++
T Consensus 80 v~~~~~~~i~~~~~~v~~~a~~~ 102 (102)
T smart00839 80 VFTDLSEIMRNALEEIFETAQKY 102 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999998753
No 18
>PRK08374 homoserine dehydrogenase; Provisional
Probab=99.28 E-value=5.1e-12 Score=129.56 Aligned_cols=168 Identities=20% Similarity=0.313 Sum_probs=115.9
Q ss_pred CeEEEEecChHHHHHHHHHHH--------CC--CEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCC---CeecC
Q 012750 253 LTFVIQGFGNVGSWAARLIHE--------RG--GKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDG---GDSME 319 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~--------~G--akVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~---~~~i~ 319 (457)
.+|+||||||||+.++++|.+ .| .+|++|+|++|++|||+|+|++++++++++++.+..|+. ...++
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 689999999999999999977 45 799999999999999999999999999999888877752 22346
Q ss_pred CCccc-ccccceeeccccCCcccccccccccceEEEecCCCCC--------C-HHHHHHHHhCCCeEecccccccC-Cc-
Q 012750 320 PSELL-AHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPT--------D-PEADEILSKRGVTILPDIYANSG-GV- 387 (457)
Q Consensus 320 ~~ell-~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~--------t-~~a~~iL~~rGI~viPD~laNaG-GV- 387 (457)
.++++ +.++||+|.|+ +.+++..+.++++.+|-+.-+ . ++-.++-+++|+.+.- -+|.| |+
T Consensus 83 ~~ell~~~~~DVvVd~t-----~~~~a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~--ea~v~~GiP 155 (336)
T PRK08374 83 PEEIVEEIDADIVVDVT-----NDKNAHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLF--EATVMAGTP 155 (336)
T ss_pred HHHHHhcCCCCEEEECC-----CcHHHHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEE--eccccccCC
Confidence 66787 57999999775 345777766666666655431 1 2233455678887763 33333 43
Q ss_pred eehhHHHhhhc---------ccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012750 388 TVSYFEWVQNI---------QGF-MWEEDKVNNELRRYMIRAFHNIKGMCQTHNC 432 (457)
Q Consensus 388 i~S~~E~~qn~---------~~~-~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~ 432 (457)
+.+- +++. ++. .=+-.-+..++++ ...|.+++..|++.|.
T Consensus 156 ii~~---l~~~l~g~~i~~i~GIlnGT~nyIl~~m~~--g~~f~eal~eAq~~Gy 205 (336)
T PRK08374 156 IIGL---LRENLLGDTVKRIEAVVNATTTFILTRMEQ--GKTFEEALKEAQTLGI 205 (336)
T ss_pred chHH---HHhhccccceEEEEEEEechHHHHHHHhhC--CCCHHHHHHHHHHcCC
Confidence 2222 2221 110 0122345555643 5678999999998876
No 19
>PRK06392 homoserine dehydrogenase; Provisional
Probab=99.08 E-value=1.7e-10 Score=117.86 Aligned_cols=175 Identities=22% Similarity=0.271 Sum_probs=106.3
Q ss_pred CeEEEEecChHHHHHHHHHHH--------CCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccc
Q 012750 253 LTFVIQGFGNVGSWAARLIHE--------RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL 324 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~--------~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell 324 (457)
++|+||||||||+.++++|.+ .+.+||+|+|+++++|||+|||++++++++++ +.+..++ .+.++.++++
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~-g~l~~~~-~~~~~~~~ll 78 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEK-GRLEEID-YEKIKFDEIF 78 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhc-CccccCC-CCcCCHHHHh
Confidence 379999999999999999987 36799999999999999999999999998866 6665553 1223456677
Q ss_pred ccccceeeccccCCccccccc-----ccccceEEEecCCC-CCC---HHHHHHHHhCCCeEecccccccCCceehhHHHh
Q 012750 325 AHECDVLIPCALGGVLKRENA-----ADVKAKFIIEAANH-PTD---PEADEILSKRGVTILPDIYANSGGVTVSYFEWV 395 (457)
Q Consensus 325 ~~~~DIliPaA~~~~It~~na-----~~i~akiIvEgAN~-p~t---~~a~~iL~~rGI~viPD~laNaGGVi~S~~E~~ 395 (457)
..++||+|+|+..+ .+.+-+ +-++...=|=-||- |+. ++-.+.-+++|+.+.-.-...+|=-+..-+...
T Consensus 79 ~~~~DVvVE~t~~~-~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~eatV~~g~Pii~~~~~~ 157 (326)
T PRK06392 79 EIKPDVIVDVTPAS-KDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEATVAGGVPLFSLRDYS 157 (326)
T ss_pred cCCCCEEEECCCCC-CcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEeeeeeeccchhhhhhhh
Confidence 78999999998643 121111 11222221223442 222 333344556777766554333332233222211
Q ss_pred h------hccc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012750 396 Q------NIQG-FMWEEDKVNNELRRYMIRAFHNIKGMCQTHNC 432 (457)
Q Consensus 396 q------n~~~-~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~ 432 (457)
. .+++ +.=+-.-+..++++ ...|.+.+..|++.|.
T Consensus 158 ~~g~~i~~i~GilnGT~nyIl~~m~~--g~~f~~al~eAq~lG~ 199 (326)
T PRK06392 158 TLPSRIKNFRGIVSSTINYVIRQEAN--GRGFLDVVKIAQKMGI 199 (326)
T ss_pred cccCCEEEEEEEEeChHHHHHhhccC--CCCHHHHHHHHHHcCC
Confidence 0 0000 00012234455542 5578899999998876
No 20
>PRK06270 homoserine dehydrogenase; Provisional
Probab=98.71 E-value=4.1e-08 Score=100.97 Aligned_cols=177 Identities=22% Similarity=0.351 Sum_probs=110.9
Q ss_pred CeEEEEecChHHHHHHHHHHHC----------CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCe-ecCCC
Q 012750 253 LTFVIQGFGNVGSWAARLIHER----------GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGD-SMEPS 321 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~----------GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~-~i~~~ 321 (457)
.+|+|+|||+||+.+++.|.+. +.+|++|+|+++.+|+|+|+|++++.++.++.+.+..|++.. ..+.+
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 5899999999999999999765 589999999999999999999999998888777666665332 22445
Q ss_pred ccc-ccccceeeccccCCccccccccc-----c--cceEEEecCC-CCCC---HHHHHHHHhCCCeEecccccccCCcee
Q 012750 322 ELL-AHECDVLIPCALGGVLKRENAAD-----V--KAKFIIEAAN-HPTD---PEADEILSKRGVTILPDIYANSGGVTV 389 (457)
Q Consensus 322 ell-~~~~DIliPaA~~~~It~~na~~-----i--~akiIvEgAN-~p~t---~~a~~iL~~rGI~viPD~laNaGGVi~ 389 (457)
+++ +.++||+|.|+..+.-+.+.+.. + +..+|++ | .|.+ ++-.+..+++|+.+.-.-...+|--+.
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVta--NK~pla~~~~eL~~~A~~~g~~~~~ea~v~~glPii 160 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTS--NKGPLALAYKELKELAKKNGVRFRYEATVGGAMPII 160 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcC--CcHHHHhhHHHHHHHHHHcCCEEEEeeeeeechhHH
Confidence 666 46899999998765443322221 2 3455552 3 3432 444456668888775322222222222
Q ss_pred hhH-HHhhh-----ccc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012750 390 SYF-EWVQN-----IQG-FMWEEDKVNNELRRYMIRAFHNIKGMCQTHNC 432 (457)
Q Consensus 390 S~~-E~~qn-----~~~-~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~ 432 (457)
..+ +.+.. +.+ +.=+-.-+..++++. ...|.+++..|++.|.
T Consensus 161 ~~l~~~l~g~~I~~I~GIlnGT~nyIl~~m~~~-g~~f~~al~~Aq~~G~ 209 (341)
T PRK06270 161 NLAKETLAGNDIKSIKGILNGTTNYILTRMEEE-GLSYEQALAEAQELGY 209 (341)
T ss_pred HHHHhhcccCceEEEEEEEeCcHHHHHHHHhhc-CCCHHHHHHHHHHcCC
Confidence 221 11110 000 011223455555321 5678999999998876
No 21
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.65 E-value=1.9e-07 Score=77.08 Aligned_cols=84 Identities=30% Similarity=0.412 Sum_probs=70.2
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCc
Q 012750 230 ATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSL 309 (457)
Q Consensus 230 aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~ 309 (457)
+||+|++..+++..+..+.++++++++|+|+|++|+.+++.|.+.+.+.+.++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r------------------------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR------------------------- 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC-------------------------
Confidence 4899999999999988888899999999999999999999999986555557665
Q ss_pred ccCCCCeecCCCcccccccceeeccccCCccccc--ccccccceEEEecC
Q 012750 310 KDFDGGDSMEPSELLAHECDVLIPCALGGVLKRE--NAADVKAKFIIEAA 357 (457)
Q Consensus 310 ~~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~--na~~i~akiIvEgA 357 (457)
|++|+|+....+..+ +....++.+|++.|
T Consensus 56 -------------------di~i~~~~~~~~~~~~~~~~~~~~~~v~~~a 86 (86)
T cd05191 56 -------------------DILVTATPAGVPVLEEATAKINEGAVVIDLA 86 (86)
T ss_pred -------------------CEEEEcCCCCCCchHHHHHhcCCCCEEEecC
Confidence 999999987766655 56666778887764
No 22
>PLN02700 homoserine dehydrogenase family protein
Probab=98.25 E-value=2.6e-06 Score=88.75 Aligned_cols=50 Identities=28% Similarity=0.360 Sum_probs=42.9
Q ss_pred CCeEEEEecChHHHHHHHHHHHC-------C--CEEEEEECCCCeeeCCC----CCCHHHHHH
Q 012750 252 DLTFVIQGFGNVGSWAARLIHER-------G--GKVIAVSDITGAVKNAD----GIDIHKLLA 301 (457)
Q Consensus 252 g~~vaIqGfGnVG~~~a~~L~~~-------G--akVVaVsD~~G~iynp~----GLDi~~L~~ 301 (457)
-.+|+|.|+|+||+.++++|.++ | .+|++|+|+++.++||+ |||++.+.+
T Consensus 3 ~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s~~~l~~~~~~~~Gldl~~~~~ 65 (377)
T PLN02700 3 KIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSKSLVLAEDVLNEELDDALLSE 65 (377)
T ss_pred EEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECCCceEECCccccCCCCHHHHHH
Confidence 45789999999999999987643 3 58999999999999965 999888776
No 23
>PRK06813 homoserine dehydrogenase; Validated
Probab=98.05 E-value=1.8e-05 Score=81.84 Aligned_cols=176 Identities=19% Similarity=0.215 Sum_probs=98.5
Q ss_pred CeEEEEecChHHHHHHHHHHHC----------CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCc
Q 012750 253 LTFVIQGFGNVGSWAARLIHER----------GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSE 322 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~----------GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~e 322 (457)
.+|+|.|||+||+.++++|.++ ..+|++|+|+++.+++++|+|++.+++.......+..|. ...+++
T Consensus 3 i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~---~~~~~~ 79 (346)
T PRK06813 3 IKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYI---EHHPEE 79 (346)
T ss_pred eEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhh---ccChHH
Confidence 5799999999999999998754 258999999999999999999988665432211111111 011223
Q ss_pred cc--ccccceeeccccCCccccccccc-----ccceEEEecCCCC-CC---HHHHHHHHhCCCeEecccccccCCceehh
Q 012750 323 LL--AHECDVLIPCALGGVLKRENAAD-----VKAKFIIEAANHP-TD---PEADEILSKRGVTILPDIYANSGGVTVSY 391 (457)
Q Consensus 323 ll--~~~~DIliPaA~~~~It~~na~~-----i~akiIvEgAN~p-~t---~~a~~iL~~rGI~viPD~laNaGGVi~S~ 391 (457)
++ ..+.||+|.|+..+..+.+-+.. ++...=|=-||=. ++ ++-.+.-+++|+.+.-.-..-+|==+...
T Consensus 80 ~~~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~yEasVggGiPiI~~ 159 (346)
T PRK06813 80 RATDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIRYSGATAAALPTLDI 159 (346)
T ss_pred HhcCCCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEEEeeeeeeccchHHH
Confidence 33 23689999997655444443322 2222222244543 22 34444556777777655433222222222
Q ss_pred HHHhh------hcccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012750 392 FEWVQ------NIQGF-MWEEDKVNNELRRYMIRAFHNIKGMCQTHNC 432 (457)
Q Consensus 392 ~E~~q------n~~~~-~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~ 432 (457)
+.... .+.+. .=+-.-+..++.+ -...|.+++..|++.|.
T Consensus 160 l~~~~~g~~I~~i~GIlNGT~NyIL~~m~~-~g~~f~eal~~Aq~lGy 206 (346)
T PRK06813 160 GQFSLAGCHIEKIEGILNGTTNYILTKMNE-EDITFEEALKEAQSKGI 206 (346)
T ss_pred HhhhcccCcEEEEEEEEechHHHHHhhhhh-cCCCHHHHHHHHHHcCC
Confidence 22110 00000 0011233344432 13478899999998886
No 24
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.85 E-value=7.7e-05 Score=69.28 Aligned_cols=110 Identities=25% Similarity=0.377 Sum_probs=63.7
Q ss_pred HHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcc
Q 012750 244 AEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSEL 323 (457)
Q Consensus 244 ~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~el 323 (457)
+..+.-+.|++++|.|||+||+.+|+.|...|++|+ |+|.+ +-.+++... .+| +..+-++.
T Consensus 15 r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~-V~e~D----------Pi~alqA~~-----dGf---~v~~~~~a 75 (162)
T PF00670_consen 15 RATNLMLAGKRVVVIGYGKVGKGIARALRGLGARVT-VTEID----------PIRALQAAM-----DGF---EVMTLEEA 75 (162)
T ss_dssp HHH-S--TTSEEEEE--SHHHHHHHHHHHHTT-EEE-EE-SS----------HHHHHHHHH-----TT----EEE-HHHH
T ss_pred hcCceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEE-EEECC----------hHHHHHhhh-----cCc---EecCHHHH
Confidence 355788999999999999999999999999999998 88873 334433322 223 22232344
Q ss_pred cccccceeeccccC-CcccccccccccceEEE-ecCCCCCCHHHH-HHHHhCCCe
Q 012750 324 LAHECDVLIPCALG-GVLKRENAADVKAKFII-EAANHPTDPEAD-EILSKRGVT 375 (457)
Q Consensus 324 l~~~~DIliPaA~~-~~It~~na~~i~akiIv-EgAN~p~t~~a~-~iL~~rGI~ 375 (457)
+ ..+||||-|+.. ++|+.+...++|=..|+ ...- ++.|.+ +.|.+.++.
T Consensus 76 ~-~~adi~vtaTG~~~vi~~e~~~~mkdgail~n~Gh--~d~Eid~~~L~~~~~~ 127 (162)
T PF00670_consen 76 L-RDADIFVTATGNKDVITGEHFRQMKDGAILANAGH--FDVEIDVDALEANAVE 127 (162)
T ss_dssp T-TT-SEEEE-SSSSSSB-HHHHHHS-TTEEEEESSS--STTSBTHHHHHTCTSE
T ss_pred H-hhCCEEEECCCCccccCHHHHHHhcCCeEEeccCc--CceeEeeccccccCcE
Confidence 4 378999988754 67898888888654444 3322 233333 357766553
No 25
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.81 E-value=0.00056 Score=61.37 Aligned_cols=130 Identities=18% Similarity=0.222 Sum_probs=79.8
Q ss_pred HHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCe
Q 012750 237 YATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGD 316 (457)
Q Consensus 237 ~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~ 316 (457)
++++.++++.+.+++++++.|.|.|++|+.+++.|.+.|...|.+.|.+ .+.+.+..++.+.. .. ...
T Consensus 4 ~g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~----------~~~~~~~~~~~~~~-~~-~~~ 71 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRT----------LEKAKALAERFGEL-GI-AIA 71 (155)
T ss_pred HHHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC----------HHHHHHHHHHHhhc-cc-cee
Confidence 3456666667888899999999999999999999998874434466653 23333333321110 00 001
Q ss_pred ecCCCcccccccceeeccccCCcccccccc----cc-cceEEEecCCCCCCHHHHHHHHhCCCeEecc
Q 012750 317 SMEPSELLAHECDVLIPCALGGVLKRENAA----DV-KAKFIIEAANHPTDPEADEILSKRGVTILPD 379 (457)
Q Consensus 317 ~i~~~ell~~~~DIliPaA~~~~It~~na~----~i-~akiIvEgAN~p~t~~a~~iL~~rGI~viPD 379 (457)
..+..+. -.++|++|-|......+.++.. .+ .-++|++-+-.|...+..+.++++|+.++|-
T Consensus 72 ~~~~~~~-~~~~Dvvi~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~~v~g 138 (155)
T cd01065 72 YLDLEEL-LAEADLIINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNPLETPLLKEARALGAKTIDG 138 (155)
T ss_pred ecchhhc-cccCCEEEeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCceeCC
Confidence 1122233 2489999999876654112111 11 3467777765564337778899999988774
No 26
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=97.74 E-value=0.00014 Score=74.71 Aligned_cols=167 Identities=21% Similarity=0.293 Sum_probs=94.6
Q ss_pred CCCeEEEEecChHHHHHHHHHHHC----------CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCC
Q 012750 251 RDLTFVIQGFGNVGSWAARLIHER----------GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEP 320 (457)
Q Consensus 251 ~g~~vaIqGfGnVG~~~a~~L~~~----------GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~ 320 (457)
+-.+|.|.|||+||+.++++|.++ ..+|++|+|+++..+. ++|...+ +.+...+... .+.
T Consensus 2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~--~~~~~~~-~~~~~~~~~~-------~~~ 71 (333)
T COG0460 2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVR--DLDLLNA-EVWTTDGALS-------LGD 71 (333)
T ss_pred ceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcc--cccccch-hhheeccccc-------ccH
Confidence 346899999999999999999875 3599999999998774 3444333 2222222211 122
Q ss_pred CcccccccceeeccccCCccccccccc----ccceEEEecCCCC-CCH---HHHHHHHhCCCeEecccccccCCc-eehh
Q 012750 321 SELLAHECDVLIPCALGGVLKRENAAD----VKAKFIIEAANHP-TDP---EADEILSKRGVTILPDIYANSGGV-TVSY 391 (457)
Q Consensus 321 ~ell~~~~DIliPaA~~~~It~~na~~----i~akiIvEgAN~p-~t~---~a~~iL~~rGI~viPD~laNaGGV-i~S~ 391 (457)
+.+...+.||++++...+.-+.+-++. ++...-|=-||=+ .+. |-.+.-+++|+.+.=.... +||+ +.+.
T Consensus 72 ~~~~~~~~dvvve~~~~d~~~~~~~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV-~gGiPiI~~ 150 (333)
T COG0460 72 EVLLDEDIDVVVELVGGDVEPAEPADLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATV-GGGIPIIKL 150 (333)
T ss_pred hhhccccCCEEEecCcccCCchhhHHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEEEEeee-ccCcchHHH
Confidence 334577899999998775544442222 3333333345554 332 2333445666555433222 2332 2211
Q ss_pred HHHhhhcc-c---------CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012750 392 FEWVQNIQ-G---------FMWEEDKVNNELRRYMIRAFHNIKGMCQTHNC 432 (457)
Q Consensus 392 ~E~~qn~~-~---------~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~ 432 (457)
+++.- + +.=+-..+..++++- ...|.++++.|++.|.
T Consensus 151 ---lr~~l~g~~I~~i~GIlNGT~NyIlt~m~~~-~~~f~dal~eAq~lGy 197 (333)
T COG0460 151 ---LRELLAGDEILSIRGILNGTTNYILTRMEEG-GLSFEDALAEAQELGY 197 (333)
T ss_pred ---HHhhcccCceEEEEEEEeccHHHHHHHHHcc-CCCHHHHHHHHHHcCC
Confidence 11110 0 011334556666652 2289999999999875
No 27
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.69 E-value=0.00035 Score=70.52 Aligned_cols=126 Identities=23% Similarity=0.308 Sum_probs=85.3
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcC
Q 012750 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTG 307 (457)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g 307 (457)
...|+.|.+. .+++..+.++.|+++.|+|+|.+|+.+|+.|...|++|+ |.|.+. +.+.+..+.
T Consensus 130 ~~~~Ae~ai~---~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~-v~~R~~----------~~~~~~~~~-- 193 (287)
T TIGR02853 130 SIPTAEGAIM---MAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGARVF-VGARSS----------ADLARITEM-- 193 (287)
T ss_pred cHhHHHHHHH---HHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEE-EEeCCH----------HHHHHHHHC--
Confidence 3467776654 445556778999999999999999999999999999987 666632 222222111
Q ss_pred CcccCCCCeecCCCccc--ccccceeeccccCCccccccccccc-ceEEEecCCCCC-CHHHHHHHHhCCCeEe
Q 012750 308 SLKDFDGGDSMEPSELL--AHECDVLIPCALGGVLKRENAADVK-AKFIIEAANHPT-DPEADEILSKRGVTIL 377 (457)
Q Consensus 308 ~~~~~~~~~~i~~~ell--~~~~DIliPaA~~~~It~~na~~i~-akiIvEgAN~p~-t~~a~~iL~~rGI~vi 377 (457)
+...++.+++- -.++|+++-|.....++.+..+.++ -.+|+.-+..|- |+- +..+++|+..+
T Consensus 194 ------g~~~~~~~~l~~~l~~aDiVint~P~~ii~~~~l~~~k~~aliIDlas~Pg~tdf--~~Ak~~G~~a~ 259 (287)
T TIGR02853 194 ------GLIPFPLNKLEEKVAEIDIVINTIPALVLTADVLSKLPKHAVIIDLASKPGGTDF--EYAKKRGIKAL 259 (287)
T ss_pred ------CCeeecHHHHHHHhccCCEEEECCChHHhCHHHHhcCCCCeEEEEeCcCCCCCCH--HHHHHCCCEEE
Confidence 11222212221 2389999999877777776666653 368898888884 433 57789998765
No 28
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=97.60 E-value=0.00014 Score=83.05 Aligned_cols=180 Identities=15% Similarity=0.219 Sum_probs=98.2
Q ss_pred HhCCCCCCCeEEEEecChHHHHHHHHHHHC---------CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCC
Q 012750 245 EHGQAIRDLTFVIQGFGNVGSWAARLIHER---------GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGG 315 (457)
Q Consensus 245 ~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~---------GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~ 315 (457)
.+-.+-+..+|+|.|||+||+.++++|.++ ..+|++|+|+++.+++|+|+|++.+.+...... ..+ +.
T Consensus 458 ~f~~~~~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~--~~~-~~ 534 (819)
T PRK09436 458 SFFLSDQVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREELAEAG--EPF-DL 534 (819)
T ss_pred HHhcccccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHHhhcc--CCC-CH
Confidence 343445778999999999999999998653 358999999999999999999987665443321 111 10
Q ss_pred eecCCCccc---ccccceeeccccCCcccccccccccceEEEecCCCC-CC------HHHHHHHHhCCCeEecccccccC
Q 012750 316 DSMEPSELL---AHECDVLIPCALGGVLKRENAADVKAKFIIEAANHP-TD------PEADEILSKRGVTILPDIYANSG 385 (457)
Q Consensus 316 ~~i~~~ell---~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p-~t------~~a~~iL~~rGI~viPD~laNaG 385 (457)
..+ -+++ ..+.||+|+|.-...+...-..-++..+=|=-||=. .+ ++-.+.-+++|+.+...-... |
T Consensus 535 ~~~--~~~~~~~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VVtaNK~~~a~~~~~~~el~~~a~~~~~~~~yeatV~-~ 611 (819)
T PRK09436 535 DRL--IRLVKEYHLLNPVIVDCTSSQAVADQYADFLAAGFHVVTPNKKANTSSYAYYHQLREAARKSRRKFLYETNVG-A 611 (819)
T ss_pred HHH--HHHHhhcCCCCCEEEECCCChHHHHHHHHHHHcCCEEEcCCchhccCCHHHHHHHHHHHHHcCCeEEEeeeec-c
Confidence 000 0122 236789999976543322211223332222245543 22 223344557777776543222 2
Q ss_pred Cc-eehhH-HHhh---hc---ccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012750 386 GV-TVSYF-EWVQ---NI---QGF-MWEEDKVNNELRRYMIRAFHNIKGMCQTHNC 432 (457)
Q Consensus 386 GV-i~S~~-E~~q---n~---~~~-~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~ 432 (457)
|+ +...+ +.++ ++ .+. .=+-.-+..++++ ...|.+++..|++.|.
T Consensus 612 giPii~~l~~~~~~g~~i~~i~GilnGT~nyIl~~~~~--g~~f~~al~~Aq~~Gy 665 (819)
T PRK09436 612 GLPVIETLQNLLNAGDELLKFEGILSGSLSFIFGKLDE--GMSFSEATRLAKEKGY 665 (819)
T ss_pred ccchHHHHHHHHhccCcEEEEEEEEeChHHHHhhhhhc--CCCHHHHHHHHHHcCC
Confidence 33 11111 1111 00 010 0011233444433 4567888888888775
No 29
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.51 E-value=0.0029 Score=64.01 Aligned_cols=95 Identities=17% Similarity=0.313 Sum_probs=70.1
Q ss_pred CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhh
Q 012750 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGN-VGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDK 305 (457)
Q Consensus 227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~ 305 (457)
-.++|..|++.. +++++.+++|++++|+|-|+ ||+.++.+|.++|+.|+ +++++. ..|.+
T Consensus 137 ~~PcTp~ai~~l----l~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVt-v~~s~t----------~~l~~---- 197 (286)
T PRK14175 137 FVPCTPLGIMEI----LKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVT-ILHSRS----------KDMAS---- 197 (286)
T ss_pred CCCCcHHHHHHH----HHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEE-EEeCCc----------hhHHH----
Confidence 357899988665 45678999999999999988 99999999999999998 776642 01111
Q ss_pred cCCcccCCCCeecCCCcccccccceeeccccC-CcccccccccccceEEEecCCCC
Q 012750 306 TGSLKDFDGGDSMEPSELLAHECDVLIPCALG-GVLKRENAADVKAKFIIEAANHP 360 (457)
Q Consensus 306 ~g~~~~~~~~~~i~~~ell~~~~DIliPaA~~-~~It~~na~~i~akiIvEgAN~p 360 (457)
....+||+|-|... +.|+++.++. ..+|++.+.++
T Consensus 198 ------------------~~~~ADIVIsAvg~p~~i~~~~vk~--gavVIDvGi~~ 233 (286)
T PRK14175 198 ------------------YLKDADVIVSAVGKPGLVTKDVVKE--GAVIIDVGNTP 233 (286)
T ss_pred ------------------HHhhCCEEEECCCCCcccCHHHcCC--CcEEEEcCCCc
Confidence 12378999888754 4677765432 36788877766
No 30
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=97.40 E-value=0.00041 Score=79.21 Aligned_cols=174 Identities=18% Similarity=0.193 Sum_probs=99.6
Q ss_pred CCCCCeEEEEecChHHHHHHHHHHHC--------C--CEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec
Q 012750 249 AIRDLTFVIQGFGNVGSWAARLIHER--------G--GKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM 318 (457)
Q Consensus 249 ~l~g~~vaIqGfGnVG~~~a~~L~~~--------G--akVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i 318 (457)
+.+..+++|.|||+||+.++++|.++ | .+|++|+|+++.+++++|+|...+.+...... ..+ ....+
T Consensus 455 ~~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~--~~~-~~~~~ 531 (810)
T PRK09466 455 AEKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFDDEA--VEW-DEESL 531 (810)
T ss_pred cCceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHHhhc--CCc-cHHHH
Confidence 44567899999999999999998653 3 58999999999999999999888776544321 111 11000
Q ss_pred CCCccc---ccccceeeccccCCcccccccccccceEEEecCCCCC-C------HHHHHHHHhCCCeEecccccccCCce
Q 012750 319 EPSELL---AHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPT-D------PEADEILSKRGVTILPDIYANSGGVT 388 (457)
Q Consensus 319 ~~~ell---~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~-t------~~a~~iL~~rGI~viPD~laNaGGVi 388 (457)
-+++ ..+.+|+|.|.....+...-..-+++..=|=-||=.. + ++-.+.-+++|+.+...-...+|=-+
T Consensus 532 --~e~i~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~~~~~~yEasV~~giPi 609 (810)
T PRK09466 532 --FLWLRAHPYDELVVLDVTASEQLALQYPDFASHGFHVISANKLAGSSPSNFYRQIKDAFAKTGRHWLYNATVGAGLPI 609 (810)
T ss_pred --HHHHhhcCCCCcEEEECCCChHHHHHHHHHHHcCCEEEcCCcccccccHHHHHHHHHHHHHcCCeEEEeceeeeccCh
Confidence 1222 2234699999765433322223344444444667631 1 12234456788887755433332222
Q ss_pred ehhHHHhhhcc--cC---------CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012750 389 VSYFEWVQNIQ--GF---------MWEEDKVNNELRRYMIRAFHNIKGMCQTHNC 432 (457)
Q Consensus 389 ~S~~E~~qn~~--~~---------~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~ 432 (457)
..- ++++. +. .=+-.-+..++++ ...|.+++..|++.|.
T Consensus 610 i~~---l~~l~~~gd~i~~i~GIlnGT~nyi~~~~~~--g~~f~eal~~Aq~~Gy 659 (810)
T PRK09466 610 NHT---VRDLRNSGDSILAISGIFSGTLSWLFLQFDG--SVPFSELVDQAWQQGL 659 (810)
T ss_pred HHH---HHHHHhccCcEEEEEEEEccHHHHHHHHHhc--CCCHHHHHHHHHHcCC
Confidence 211 22221 10 0011224444443 4578888889998775
No 31
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.34 E-value=0.0011 Score=67.01 Aligned_cols=126 Identities=25% Similarity=0.316 Sum_probs=75.4
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcC
Q 012750 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTG 307 (457)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g 307 (457)
+.+|+.| ++..++++.+.++.+++|.|.|+|.+|+.++..|...|++|+ ++|.+ .+.+.. .++.
T Consensus 131 s~~~aeg---av~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~-v~~r~----------~~~~~~-~~~~- 194 (296)
T PRK08306 131 SIPTAEG---AIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKALGANVT-VGARK----------SAHLAR-ITEM- 194 (296)
T ss_pred cHhHHHH---HHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEECC----------HHHHHH-HHHc-
Confidence 3466666 444566777888999999999999999999999999999887 56664 222222 1211
Q ss_pred CcccCCCCeecCCCccc--ccccceeeccccCCcccccccccc-cceEEEecCCCCC-CHHHHHHHHhCCCeEe
Q 012750 308 SLKDFDGGDSMEPSELL--AHECDVLIPCALGGVLKRENAADV-KAKFIIEAANHPT-DPEADEILSKRGVTIL 377 (457)
Q Consensus 308 ~~~~~~~~~~i~~~ell--~~~~DIliPaA~~~~It~~na~~i-~akiIvEgAN~p~-t~~a~~iL~~rGI~vi 377 (457)
+.+.+..+++- -.++|++|-|+....++++-...+ +-.+|+.-|..|- |.- +.-+++|+.++
T Consensus 195 ------G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~~~~l~~~~~g~vIIDla~~pggtd~--~~a~~~Gv~~~ 260 (296)
T PRK08306 195 ------GLSPFHLSELAEEVGKIDIIFNTIPALVLTKEVLSKMPPEALIIDLASKPGGTDF--EYAEKRGIKAL 260 (296)
T ss_pred ------CCeeecHHHHHHHhCCCCEEEECCChhhhhHHHHHcCCCCcEEEEEccCCCCcCe--eehhhCCeEEE
Confidence 12222211211 137899998875555665544333 2245565555551 211 23355666554
No 32
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.33 E-value=0.0067 Score=64.23 Aligned_cols=183 Identities=21% Similarity=0.301 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCC
Q 012750 234 GVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFD 313 (457)
Q Consensus 234 Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~ 313 (457)
++..++-+.+++.-.+|++++|.|+|.|.+|.-+|+.|.++|.+-|.|++.+ .+...++.++-+
T Consensus 160 Si~saAv~lA~~~~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT----------~erA~~La~~~~------ 223 (414)
T COG0373 160 SISSAAVELAKRIFGSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRT----------LERAEELAKKLG------ 223 (414)
T ss_pred chHHHHHHHHHHHhcccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCC----------HHHHHHHHHHhC------
Confidence 4555555556655566999999999999999999999999998777788874 455555555433
Q ss_pred CCeecCCCcccc--cccceeecc--ccCCcccccccccc-cc---eEEEecCCCC-CCHHHHHHHHhCCCeEeccccccc
Q 012750 314 GGDSMEPSELLA--HECDVLIPC--ALGGVLKRENAADV-KA---KFIIEAANHP-TDPEADEILSKRGVTILPDIYANS 384 (457)
Q Consensus 314 ~~~~i~~~ell~--~~~DIliPa--A~~~~It~~na~~i-~a---kiIvEgAN~p-~t~~a~~iL~~rGI~viPD~laNa 384 (457)
++.++-+++.+ .++||+|-| |...+|+.++++.. +. .+|++-||-+ +.|+... | .||.+.
T Consensus 224 -~~~~~l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavPRdie~~v~~-l--~~v~l~------- 292 (414)
T COG0373 224 -AEAVALEELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVPRDVEPEVGE-L--PNVFLY------- 292 (414)
T ss_pred -CeeecHHHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCCCCCCccccC-c--CCeEEE-------
Confidence 34444455543 499999999 56788998888774 22 3999999966 4443210 0 112110
Q ss_pred CCceehhHHHh--hhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHHHHH
Q 012750 385 GGVTVSYFEWV--QNIQGFMWEEDKVNNELRRYMIRAFHNIKGMCQTHNCN-----LRMGAFTLGVNRVARAT 450 (457)
Q Consensus 385 GGVi~S~~E~~--qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~-----~r~aA~~~A~~rv~~a~ 450 (457)
.+..++-+ .|+. ..++...+.+.+|.+.+.+.++.-+...+. +|.-|..+..+.+..+.
T Consensus 293 ---~iDDL~~iv~~n~~----~R~~~~~~ae~iIeee~~~~~~~l~~~~~~~~i~~lr~~a~~v~~~ele~a~ 358 (414)
T COG0373 293 ---TIDDLEEIVEENLE----ARKEEAAKAEAIIEEELAEFMEWLKKLEVVPTIRALREQAEDVREEELEKAL 358 (414)
T ss_pred ---ehhhHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111111 1111 233445566777777777777777766653 44444444444444433
No 33
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.30 E-value=0.003 Score=63.72 Aligned_cols=114 Identities=23% Similarity=0.355 Sum_probs=69.8
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccccc--ccc
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAH--ECD 329 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~--~~D 329 (457)
++|.|+|+|++|+.+++.|.+.|.+|+ +.|.+ .+.+.+..+. | .... +++++.+. .+|
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~-v~dr~----------~~~~~~~~~~-g-------~~~~~~~~e~~~~~~~~d 61 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVV-GYDRN----------PEAVEALAEE-G-------ATGADSLEELVAKLPAPR 61 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEE-EEECC----------HHHHHHHHHC-C-------CeecCCHHHHHhhcCCCC
Confidence 379999999999999999999999986 55553 3344333322 1 1111 33444432 367
Q ss_pred eeeccccCCccccccc----ccc-cceEEEecCCCC--CCHHHHHHHHhCCCeEecccccccCCc
Q 012750 330 VLIPCALGGVLKRENA----ADV-KAKFIIEAANHP--TDPEADEILSKRGVTILPDIYANSGGV 387 (457)
Q Consensus 330 IliPaA~~~~It~~na----~~i-~akiIvEgAN~p--~t~~a~~iL~~rGI~viPD~laNaGGV 387 (457)
+++-|-.......+.+ ..+ .-++|+...+.. .+.+..+.++++|+.++ | ...+||+
T Consensus 62 vvi~~v~~~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~-d-apvsG~~ 124 (301)
T PRK09599 62 VVWLMVPAGEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFV-D-VGTSGGV 124 (301)
T ss_pred EEEEEecCCcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEE-e-CCCCcCH
Confidence 7666544332222221 222 235777776654 34566688999999998 6 5666665
No 34
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.22 E-value=0.00096 Score=70.90 Aligned_cols=107 Identities=20% Similarity=0.275 Sum_probs=69.2
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcC
Q 012750 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTG 307 (457)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g 307 (457)
...||.|++.+++.+ .+..+.|++|+|+|+|++|+.+|+.|...|++|+ |+|.+. ....+....
T Consensus 191 ~~gt~~s~~~ai~ra---t~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~Vi-V~d~dp----------~ra~~A~~~-- 254 (425)
T PRK05476 191 RYGTGESLLDGIKRA---TNVLIAGKVVVVAGYGDVGKGCAQRLRGLGARVI-VTEVDP----------ICALQAAMD-- 254 (425)
T ss_pred cHHHHhhhHHHHHHh---ccCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEE-EEcCCc----------hhhHHHHhc--
Confidence 356888887776544 2566899999999999999999999999999987 677532 222221111
Q ss_pred CcccCCCCeecCCCcccccccceeecccc-CCcccccccccccc-eEEEecC
Q 012750 308 SLKDFDGGDSMEPSELLAHECDVLIPCAL-GGVLKRENAADVKA-KFIIEAA 357 (457)
Q Consensus 308 ~~~~~~~~~~i~~~ell~~~~DIliPaA~-~~~It~~na~~i~a-kiIvEgA 357 (457)
+.+..+.++++. .+||+|+|+- .+.|+.+....++- .+++-.+
T Consensus 255 ------G~~v~~l~eal~-~aDVVI~aTG~~~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 255 ------GFRVMTMEEAAE-LGDIFVTATGNKDVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred ------CCEecCHHHHHh-CCCEEEECCCCHHHHHHHHHhcCCCCCEEEEcC
Confidence 112222234443 7999999974 34676666666543 3444433
No 35
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.16 E-value=0.0013 Score=70.55 Aligned_cols=108 Identities=17% Similarity=0.282 Sum_probs=69.4
Q ss_pred HHHHHHHH-HHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcc
Q 012750 232 GRGVVYAT-EALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLK 310 (457)
Q Consensus 232 g~Gv~~~~-~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~ 310 (457)
.+|...++ ...++..+..+.|++|.|+|+|+||+.+|+.|...|++|+ +.|.+. ....+....
T Consensus 233 ~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~Vi-V~e~dp----------~~a~~A~~~----- 296 (476)
T PTZ00075 233 IYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGARVV-VTEIDP----------ICALQAAME----- 296 (476)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCCc----------hhHHHHHhc-----
Confidence 44444433 4455566788999999999999999999999999999987 565431 111111111
Q ss_pred cCCCCeecCCCcccccccceeeccccC-Ccccccccccccc-eEEEecCCC
Q 012750 311 DFDGGDSMEPSELLAHECDVLIPCALG-GVLKRENAADVKA-KFIIEAANH 359 (457)
Q Consensus 311 ~~~~~~~i~~~ell~~~~DIliPaA~~-~~It~~na~~i~a-kiIvEgAN~ 359 (457)
+.+..+-++++ ..+||++.|+.. +.|+.+....++- -+++..+-+
T Consensus 297 ---G~~~~~leell-~~ADIVI~atGt~~iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 297 ---GYQVVTLEDVV-ETADIFVTATGNKDIITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred ---CceeccHHHHH-hcCCEEEECCCcccccCHHHHhccCCCcEEEEcCCC
Confidence 22222334444 379999998643 5778777777765 355554444
No 36
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=97.05 E-value=0.03 Score=58.82 Aligned_cols=131 Identities=24% Similarity=0.249 Sum_probs=83.7
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCc
Q 012750 230 ATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSL 309 (457)
Q Consensus 230 aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~ 309 (457)
+.+-=++..+-.+.++.|.++.|++|.|+|+|+||+.+|+.|...|.+|++ .|.... +. +.
T Consensus 94 aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~-~dp~~~---~~--------------~~- 154 (378)
T PRK15438 94 AVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLL-CDPPRA---DR--------------GD- 154 (378)
T ss_pred HHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEE-ECCccc---cc--------------cc-
Confidence 344444444444555678889999999999999999999999999999984 443110 00 00
Q ss_pred ccCCCCeecCCCcccccccceeecccc---------CCccccccccccc-ceEEEecCCCCC-CHHHH-HHHHhCCCe-E
Q 012750 310 KDFDGGDSMEPSELLAHECDVLIPCAL---------GGVLKRENAADVK-AKFIIEAANHPT-DPEAD-EILSKRGVT-I 376 (457)
Q Consensus 310 ~~~~~~~~i~~~ell~~~~DIliPaA~---------~~~It~~na~~i~-akiIvEgAN~p~-t~~a~-~iL~~rGI~-v 376 (457)
.....+-++++. +|||++-+.. .+.|+++....++ -.+++..+=+++ ..+|- +.|+++-+. .
T Consensus 155 ----~~~~~~L~ell~-~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga 229 (378)
T PRK15438 155 ----EGDFRSLDELVQ-EADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSV 229 (378)
T ss_pred ----ccccCCHHHHHh-hCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEE
Confidence 011123345553 6899874432 2456666666665 478999999984 55554 677766553 4
Q ss_pred eccccccc
Q 012750 377 LPDIYANS 384 (457)
Q Consensus 377 iPD~laNa 384 (457)
+=|+.-+=
T Consensus 230 ~LDV~e~E 237 (378)
T PRK15438 230 VLDVWEGE 237 (378)
T ss_pred EEecCCCC
Confidence 55655543
No 37
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.04 E-value=0.0054 Score=59.82 Aligned_cols=135 Identities=24% Similarity=0.282 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCE--EEEEECCCCeeeCCCC--CCHHHHHHhHhhc
Q 012750 231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGK--VIAVSDITGAVKNADG--IDIHKLLAHKDKT 306 (457)
Q Consensus 231 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Gak--VVaVsD~~G~iynp~G--LDi~~L~~~~~~~ 306 (457)
|+-=+..++..+++..|.+++++||+|.|.|.+|+.++..|.+.|.+ -+-+.|++|-++.... |... ..++.+..
T Consensus 4 t~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~-~~~la~~~ 82 (226)
T cd05311 4 TAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPD-KNEIAKET 82 (226)
T ss_pred hHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHH-HHHHHHHh
Confidence 34344455666777778899999999999999999999999999987 5569999987765443 2211 12222221
Q ss_pred CCcccCCCCeecCCCcccccccceeeccccCCcccccccccc-cceEEEecCCCCC-CHHHHHHHHhCCC
Q 012750 307 GSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADV-KAKFIIEAANHPT-DPEADEILSKRGV 374 (457)
Q Consensus 307 g~~~~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i-~akiIvEgAN~p~-t~~a~~iL~~rGI 374 (457)
+. . .. ..+-.+.+. ++||+|=|+..+.++++-++.+ +..+|..-. +|+ |+-.+ ...+.|.
T Consensus 83 ~~-~---~~-~~~l~~~l~-~~dvlIgaT~~G~~~~~~l~~m~~~~ivf~ls-nP~~e~~~~-~A~~~ga 144 (226)
T cd05311 83 NP-E---KT-GGTLKEALK-GADVFIGVSRPGVVKKEMIKKMAKDPIVFALA-NPVPEIWPE-EAKEAGA 144 (226)
T ss_pred cc-C---cc-cCCHHHHHh-cCCEEEeCCCCCCCCHHHHHhhCCCCEEEEeC-CCCCcCCHH-HHHHcCC
Confidence 10 0 00 011112333 5899999998888887766655 334777666 564 33323 3334466
No 38
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.02 E-value=0.0079 Score=56.21 Aligned_cols=96 Identities=20% Similarity=0.265 Sum_probs=67.7
Q ss_pred CCCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChH-HHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHh
Q 012750 226 GREAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNV-GSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKD 304 (457)
Q Consensus 226 gr~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnV-G~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~ 304 (457)
...++|++.++..+ +....+++|++|.|+|.|.+ |..++++|.++|++|+ +++++- +++.+
T Consensus 22 ~~~p~~~~a~v~l~----~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~-v~~r~~----------~~l~~--- 83 (168)
T cd01080 22 GFIPCTPAGILELL----KRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVT-VCHSKT----------KNLKE--- 83 (168)
T ss_pred CccCChHHHHHHHH----HHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEE-EEECCc----------hhHHH---
Confidence 34567877776644 44457899999999999985 8889999999999866 666531 11111
Q ss_pred hcCCcccCCCCeecCCCcccccccceeeccccC-CcccccccccccceEEEecCCCC
Q 012750 305 KTGSLKDFDGGDSMEPSELLAHECDVLIPCALG-GVLKRENAADVKAKFIIEAANHP 360 (457)
Q Consensus 305 ~~g~~~~~~~~~~i~~~ell~~~~DIliPaA~~-~~It~~na~~i~akiIvEgAN~p 360 (457)
.-.++||+|-|... +.|+.+..++ ..+|++-|..+
T Consensus 84 -------------------~l~~aDiVIsat~~~~ii~~~~~~~--~~viIDla~pr 119 (168)
T cd01080 84 -------------------HTKQADIVIVAVGKPGLVKGDMVKP--GAVVIDVGINR 119 (168)
T ss_pred -------------------HHhhCCEEEEcCCCCceecHHHccC--CeEEEEccCCC
Confidence 12378888888764 5777766543 47888888754
No 39
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=96.99 E-value=0.0019 Score=60.27 Aligned_cols=116 Identities=24% Similarity=0.342 Sum_probs=70.4
Q ss_pred hCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccc
Q 012750 246 HGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA 325 (457)
Q Consensus 246 ~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~ 325 (457)
.+.++.|++|.|.|+|++|+.+|+.|...|.+|++. |.+. -+.. .... .+.+..+-++++.
T Consensus 30 ~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~-d~~~-------~~~~---~~~~--------~~~~~~~l~ell~ 90 (178)
T PF02826_consen 30 PGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGY-DRSP-------KPEE---GADE--------FGVEYVSLDELLA 90 (178)
T ss_dssp TBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEE-ESSC-------HHHH---HHHH--------TTEEESSHHHHHH
T ss_pred CccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEe-cccC-------Chhh---hccc--------ccceeeehhhhcc
Confidence 356799999999999999999999999999999953 3332 1111 0000 0112223345554
Q ss_pred cccceeecccc-----CCccccccccccc-ceEEEecCCCCC-CHHHH-HHHHhCCCe-Eecccc
Q 012750 326 HECDVLIPCAL-----GGVLKRENAADVK-AKFIIEAANHPT-DPEAD-EILSKRGVT-ILPDIY 381 (457)
Q Consensus 326 ~~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~~a~-~iL~~rGI~-viPD~l 381 (457)
.||+++-+.. .+.|+++...+++ -.+++.-|-+.+ ..+|- +.|++.-|. .+=|+.
T Consensus 91 -~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~ 154 (178)
T PF02826_consen 91 -QADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVF 154 (178)
T ss_dssp -H-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-
T ss_pred -hhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECC
Confidence 6999988775 3456666666665 358888998884 54443 567766554 444543
No 40
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=96.91 E-value=0.0022 Score=58.97 Aligned_cols=109 Identities=30% Similarity=0.376 Sum_probs=67.3
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccccccccee
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECDVL 331 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~DIl 331 (457)
++|.++|+|++|+.+|+.|.++|+.|. +.|. +.+.+.+..+.. .+.. ++.|+. ..||++
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~-~~d~----------~~~~~~~~~~~g--------~~~~~s~~e~~-~~~dvv 61 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVT-VYDR----------SPEKAEALAEAG--------AEVADSPAEAA-EQADVV 61 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEE-EEES----------SHHHHHHHHHTT--------EEEESSHHHHH-HHBSEE
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEE-eecc----------chhhhhhhHHhh--------hhhhhhhhhHh-hcccce
Confidence 589999999999999999999999987 4554 245555555432 2222 233333 477988
Q ss_pred eccccCC-----cccccc-cccc-cceEEEecCCCC--CCHHHHHHHHhCCCeEecccc
Q 012750 332 IPCALGG-----VLKREN-AADV-KAKFIIEAANHP--TDPEADEILSKRGVTILPDIY 381 (457)
Q Consensus 332 iPaA~~~-----~It~~n-a~~i-~akiIvEgAN~p--~t~~a~~iL~~rGI~viPD~l 381 (457)
+-|-... ++..++ +..+ +-++|++-.+.. .+.+..+.+.++|+.|+=--+
T Consensus 62 i~~v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV 120 (163)
T PF03446_consen 62 ILCVPDDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPV 120 (163)
T ss_dssp EE-SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEE
T ss_pred EeecccchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeee
Confidence 8775432 222322 2223 568999888765 345667789999998875443
No 41
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.85 E-value=0.0023 Score=57.20 Aligned_cols=103 Identities=19% Similarity=0.302 Sum_probs=68.7
Q ss_pred CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccc--c
Q 012750 248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL--A 325 (457)
Q Consensus 248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell--~ 325 (457)
.+++++++.|.|.|.+|+.++..|.+.|++=|.|++++ .+.+.++.++.+. ...+.++-+++. -
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt----------~~ra~~l~~~~~~----~~~~~~~~~~~~~~~ 73 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT----------PERAEALAEEFGG----VNIEAIPLEDLEEAL 73 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS----------HHHHHHHHHHHTG----CSEEEEEGGGHCHHH
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC----------HHHHHHHHHHcCc----cccceeeHHHHHHHH
Confidence 47999999999999999999999999999855577763 4555555544210 011222333433 3
Q ss_pred cccceeeccccCC--cccccccccccc--eEEEecCCCC-CCHH
Q 012750 326 HECDVLIPCALGG--VLKRENAADVKA--KFIIEAANHP-TDPE 364 (457)
Q Consensus 326 ~~~DIliPaA~~~--~It~~na~~i~a--kiIvEgAN~p-~t~~ 364 (457)
.++||+|-|+... .++++......- ++|++-|+-+ ++|+
T Consensus 74 ~~~DivI~aT~~~~~~i~~~~~~~~~~~~~~v~Dla~Pr~i~~~ 117 (135)
T PF01488_consen 74 QEADIVINATPSGMPIITEEMLKKASKKLRLVIDLAVPRDIDPE 117 (135)
T ss_dssp HTESEEEE-SSTTSTSSTHHHHTTTCHHCSEEEES-SS-SB-TT
T ss_pred hhCCeEEEecCCCCcccCHHHHHHHHhhhhceeccccCCCCChh
Confidence 4899999997553 777777777653 6999999743 4554
No 42
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.80 E-value=0.0037 Score=66.33 Aligned_cols=102 Identities=19% Similarity=0.295 Sum_probs=64.9
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCc
Q 012750 230 ATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSL 309 (457)
Q Consensus 230 aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~ 309 (457)
-||.+++ ..+++..+..+.|++|+|+|+|.+|..+++.+...|++|+ |+|.+ ...+...+. .
T Consensus 183 g~g~s~~---~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~Vi-V~d~d----------~~R~~~A~~-~--- 244 (413)
T cd00401 183 GCRESLI---DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVI-VTEVD----------PICALQAAM-E--- 244 (413)
T ss_pred hhchhhH---HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEECC----------hhhHHHHHh-c---
Confidence 3666654 4455566788999999999999999999999999999987 56653 222222221 1
Q ss_pred ccCCCCeecCCCcccccccceeeccccC-Ccccccccccc--cceEEE
Q 012750 310 KDFDGGDSMEPSELLAHECDVLIPCALG-GVLKRENAADV--KAKFII 354 (457)
Q Consensus 310 ~~~~~~~~i~~~ell~~~~DIliPaA~~-~~It~~na~~i--~akiIv 354 (457)
+...++.++.+ ..+||+|.|+.. ..++.+..+.+ .+.+|.
T Consensus 245 ----G~~~~~~~e~v-~~aDVVI~atG~~~~i~~~~l~~mk~Ggilvn 287 (413)
T cd00401 245 ----GYEVMTMEEAV-KEGDIFVTTTGNKDIITGEHFEQMKDGAIVCN 287 (413)
T ss_pred ----CCEEccHHHHH-cCCCEEEECCCCHHHHHHHHHhcCCCCcEEEE
Confidence 22222223433 368999999753 45555434444 344433
No 43
>PRK13243 glyoxylate reductase; Reviewed
Probab=96.75 E-value=0.015 Score=60.00 Aligned_cols=108 Identities=21% Similarity=0.252 Sum_probs=70.2
Q ss_pred CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccccc
Q 012750 247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAH 326 (457)
Q Consensus 247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~ 326 (457)
|.++.|++|.|+|+|++|+.+|+.|...|.+|+ +.|.+. + ... .... +....+.++++.
T Consensus 145 g~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~-~~d~~~-----~---~~~----~~~~-------~~~~~~l~ell~- 203 (333)
T PRK13243 145 GYDVYGKTIGIIGFGRIGQAVARRAKGFGMRIL-YYSRTR-----K---PEA----EKEL-------GAEYRPLEELLR- 203 (333)
T ss_pred ccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEE-EECCCC-----C---hhh----HHHc-------CCEecCHHHHHh-
Confidence 456899999999999999999999999999988 445532 1 010 0110 112223345543
Q ss_pred ccceeeccccC-----Cccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCCe
Q 012750 327 ECDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHPT-DPEA-DEILSKRGVT 375 (457)
Q Consensus 327 ~~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~~a-~~iL~~rGI~ 375 (457)
+||+++-|... +.|+++....++ -.+++.-+=+++ ..+| .+.|++.-|.
T Consensus 204 ~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~ 260 (333)
T PRK13243 204 ESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIA 260 (333)
T ss_pred hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeE
Confidence 78999988754 345555555553 368888888874 4444 3677766553
No 44
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.73 E-value=0.021 Score=61.70 Aligned_cols=153 Identities=16% Similarity=0.276 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcc
Q 012750 231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLK 310 (457)
Q Consensus 231 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~ 310 (457)
-+.|...+++ +.+.+++++++.|.|.|.+|+.++..|.+.|++|+ +.|.+ .+++.+..++.+.
T Consensus 315 D~~G~~~~l~----~~~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~-i~~R~----------~~~~~~la~~~~~-- 377 (477)
T PRK09310 315 DGEGLFSLLK----QKNIPLNNQHVAIVGAGGAAKAIATTLARAGAELL-IFNRT----------KAHAEALASRCQG-- 377 (477)
T ss_pred CHHHHHHHHH----hcCCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEE-EEeCC----------HHHHHHHHHHhcc--
Confidence 4667766664 45778899999999999999999999999999876 55542 2333333322110
Q ss_pred cCCCCeecCCCccc-ccccceeeccccCCcccccccccccceEEEecCCCCC-CHHHHHHHHhCCCeEecccccccCCce
Q 012750 311 DFDGGDSMEPSELL-AHECDVLIPCALGGVLKRENAADVKAKFIIEAANHPT-DPEADEILSKRGVTILPDIYANSGGVT 388 (457)
Q Consensus 311 ~~~~~~~i~~~ell-~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~-t~~a~~iL~~rGI~viPD~laNaGGVi 388 (457)
..++.+++- -.++|++|-|...+..-.+. +. ++|++-.-+|. |+ --+..+++|+.++..
T Consensus 378 -----~~~~~~~~~~l~~~DiVInatP~g~~~~~~---l~-~~v~D~~Y~P~~T~-ll~~A~~~G~~~~~G--------- 438 (477)
T PRK09310 378 -----KAFPLESLPELHRIDIIINCLPPSVTIPKA---FP-PCVVDINTLPKHSP-YTQYARSQGSSIIYG--------- 438 (477)
T ss_pred -----ceechhHhcccCCCCEEEEcCCCCCcchhH---Hh-hhEEeccCCCCCCH-HHHHHHHCcCEEECc---------
Confidence 011111111 13789999887654322221 22 48899888884 55 446677888766543
Q ss_pred ehhHHHhhh---cccCCCCHHHHHHHHHHHHHHHHHH
Q 012750 389 VSYFEWVQN---IQGFMWEEDKVNNELRRYMIRAFHN 422 (457)
Q Consensus 389 ~S~~E~~qn---~~~~~w~~e~v~~~l~~~m~~~~~~ 422 (457)
+|++-. .+-..|+..+..++|+...++.+.+
T Consensus 439 ---~~Ml~~Qa~~~f~lw~g~~~~~~~~~~~~~~~~~ 472 (477)
T PRK09310 439 ---YEMFAEQALLQFRLWFPTLLFKHLEKTFRRRVAN 472 (477)
T ss_pred ---HHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH
Confidence 343321 1223577766677776655444433
No 45
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.72 E-value=0.021 Score=58.18 Aligned_cols=53 Identities=21% Similarity=0.166 Sum_probs=45.2
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecC-hHHHHHHHHHHHCCCEEEEEECCC
Q 012750 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGFG-NVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
.+.|..|+... ++++|.+++|++|+|+|-| .||+.+|.+|.++|+.|+ +++++
T Consensus 139 ~PcTp~aii~l----L~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVt-v~~~~ 192 (301)
T PRK14194 139 TPCTPSGCLRL----LEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVT-VVHSR 192 (301)
T ss_pred CCCcHHHHHHH----HHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EECCC
Confidence 46898888655 5566999999999999996 999999999999999998 66653
No 46
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.69 E-value=0.021 Score=57.83 Aligned_cols=53 Identities=26% Similarity=0.347 Sum_probs=44.4
Q ss_pred CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChH-HHHHHHHHHHCCCEEEEEECC
Q 012750 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNV-GSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnV-G~~~a~~L~~~GakVVaVsD~ 284 (457)
..+.|..|+.. ++++++++++|++|+|+|.|++ |+-++.+|.++|+.|+ ++++
T Consensus 137 ~~PcTp~aii~----lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt-~~hs 190 (285)
T PRK14189 137 FRPCTPYGVMK----MLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVT-ICHS 190 (285)
T ss_pred CcCCCHHHHHH----HHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EecC
Confidence 35789888855 4566799999999999998877 9999999999999988 4544
No 47
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=96.66 E-value=0.015 Score=61.18 Aligned_cols=48 Identities=25% Similarity=0.372 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750 236 VYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 236 ~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
+..+-.+.++.|.++.|++|.|+|+|+||+.+|+.|...|.+|++ .|.
T Consensus 100 ~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~-~Dp 147 (381)
T PRK00257 100 LGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLV-CDP 147 (381)
T ss_pred HHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEE-ECC
Confidence 333344445677889999999999999999999999999999984 454
No 48
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.65 E-value=0.024 Score=57.40 Aligned_cols=53 Identities=26% Similarity=0.250 Sum_probs=45.5
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEECCC
Q 012750 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGN-VGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~~ 285 (457)
.++|..|++.. +++++.+++|++++|+|-++ ||+-++.+|.++|+.|+ +++++
T Consensus 139 ~PcTp~av~~l----l~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVt-v~hs~ 192 (285)
T PRK10792 139 RPCTPRGIMTL----LERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVT-VCHRF 192 (285)
T ss_pred CCCCHHHHHHH----HHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEE-EEECC
Confidence 57899988655 55668999999999999988 99999999999999887 77663
No 49
>PLN02494 adenosylhomocysteinase
Probab=96.64 E-value=0.014 Score=62.74 Aligned_cols=113 Identities=17% Similarity=0.287 Sum_probs=70.0
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCc
Q 012750 230 ATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSL 309 (457)
Q Consensus 230 aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~ 309 (457)
-||.+++.+ +++..+..+.|++|+|.|+|.+|+.+|+.+...|++|+ |.|.+. .........
T Consensus 235 GtgqS~~d~---i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VI-V~e~dp----------~r~~eA~~~---- 296 (477)
T PLN02494 235 GCRHSLPDG---LMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVI-VTEIDP----------ICALQALME---- 296 (477)
T ss_pred cccccHHHH---HHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCCc----------hhhHHHHhc----
Confidence 466666444 45556777999999999999999999999999999988 555531 111111111
Q ss_pred ccCCCCeecCCCcccccccceeeccccC-Ccccccccccccce-EEEecCC--CCCCHHH
Q 012750 310 KDFDGGDSMEPSELLAHECDVLIPCALG-GVLKRENAADVKAK-FIIEAAN--HPTDPEA 365 (457)
Q Consensus 310 ~~~~~~~~i~~~ell~~~~DIliPaA~~-~~It~~na~~i~ak-iIvEgAN--~p~t~~a 365 (457)
+| ..++-++++ ..+||++-|+-. +.|+.+....++.. +++-.+. ..+..++
T Consensus 297 -G~---~vv~leEal-~~ADVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr~~~eID~~a 351 (477)
T PLN02494 297 -GY---QVLTLEDVV-SEADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLG 351 (477)
T ss_pred -CC---eeccHHHHH-hhCCEEEECCCCccchHHHHHhcCCCCCEEEEcCCCCCccCHHH
Confidence 11 112223433 268999987653 46677777777542 4444444 3354443
No 50
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=96.60 E-value=0.03 Score=57.99 Aligned_cols=102 Identities=12% Similarity=0.181 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCC
Q 012750 235 VVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDG 314 (457)
Q Consensus 235 v~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~ 314 (457)
+.+++..+++.+ .++++++|.|+|.|.+|+-+++.|.++|++-+-|++.+-.. ++.+.+.
T Consensus 158 v~s~av~~~~~~-~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~-----~~~~~~~-------------- 217 (338)
T PRK00676 158 IESVVQQELRRR-QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT-----LPYRTVV-------------- 217 (338)
T ss_pred HHHHHHHHHHHh-CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc-----cchhhhh--------------
Confidence 444444445554 45999999999999999999999999997655588876411 1111100
Q ss_pred CeecCCCcccccccceeecc-----ccCCcccccccccccceEEEecCCCC
Q 012750 315 GDSMEPSELLAHECDVLIPC-----ALGGVLKRENAADVKAKFIIEAANHP 360 (457)
Q Consensus 315 ~~~i~~~ell~~~~DIliPa-----A~~~~It~~na~~i~akiIvEgAN~p 360 (457)
.+.+ + +..++||+|-| +....|+.+..+...-|++++-|+-.
T Consensus 218 ~~~~---~-~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~~~r~~iDLAvPR 264 (338)
T PRK00676 218 REEL---S-FQDPYDVIFFGSSESAYAFPHLSWESLADIPDRIVFDFNVPR 264 (338)
T ss_pred hhhh---h-cccCCCEEEEcCCcCCCCCceeeHHHHhhccCcEEEEecCCC
Confidence 0000 1 12578999964 55667887777666668999999844
No 51
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.57 E-value=0.029 Score=56.72 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=45.1
Q ss_pred CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
..++|..||... +++++.+++|++++|+|- |.||.-+|.+|.++|+.|+ ++.+
T Consensus 137 ~~PcTp~avi~l----L~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVt-v~~s 190 (284)
T PRK14179 137 MIPCTPAGIMEM----FREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVT-LTHS 190 (284)
T ss_pred CcCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEE-EECC
Confidence 357899998554 556799999999999998 9999999999999999987 5543
No 52
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=96.50 E-value=0.065 Score=58.93 Aligned_cols=178 Identities=19% Similarity=0.233 Sum_probs=119.2
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhhhhCCCCceecCcccCCCCCCCCCcchHHHHHHH
Q 012750 159 SNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYA 238 (457)
Q Consensus 159 s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi~d~~~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~ 238 (457)
+-.|-..+...|++++..-.||..-|-=+|++... ---+.+.|+. ..| ++. +.-.-||-=+..+
T Consensus 244 ~g~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~--af~iL~ryr~---~i~-~Fn----------DDiQGTaaV~lAg 307 (581)
T PLN03129 244 TGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKN--AFRLLQRYRT---THL-CFN----------DDIQGTAAVALAG 307 (581)
T ss_pred chhhHHHhHHHHHHHHHHHhCCccEEehhhcCCcc--HHHHHHHhcc---CCC-Eec----------cccchHHHHHHHH
Confidence 44566778999999999888876545567777542 2224556642 111 111 2224577777778
Q ss_pred HHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHH-----CCC-------EEEEEECCCCeeeCCCCCCHHHHHHhHhhc
Q 012750 239 TEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHE-----RGG-------KVIAVSDITGAVKNADGIDIHKLLAHKDKT 306 (457)
Q Consensus 239 ~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~-----~Ga-------kVVaVsD~~G~iynp~GLDi~~L~~~~~~~ 306 (457)
+-.+++..|.+++..||++.|.|..|-.+|++|.+ .|. ++. +.|++|-+++...-++..-+..+.+.
T Consensus 308 ll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~-~vD~~GLi~~~r~~~l~~~k~~fa~~ 386 (581)
T PLN03129 308 LLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIW-LVDSKGLVTKSRKDSLQPFKKPFAHD 386 (581)
T ss_pred HHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEE-EEcCCCeEeCCCCccChHHHHHHHhh
Confidence 88888888999999999999999999999999876 466 554 88999999986642122222222211
Q ss_pred CCcccCCCCeecCCCccc-ccccceeecccc-CCcccccccccc----cceEEEecCCCCC
Q 012750 307 GSLKDFDGGDSMEPSELL-AHECDVLIPCAL-GGVLKRENAADV----KAKFIIEAANHPT 361 (457)
Q Consensus 307 g~~~~~~~~~~i~~~ell-~~~~DIliPaA~-~~~It~~na~~i----~akiIvEgAN~p~ 361 (457)
. ....+-.|.+ ..+.||||=++. ++.+|++-++.. +=.||---+| |+
T Consensus 387 ~-------~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSN-Pt 439 (581)
T PLN03129 387 H-------EPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSN-PT 439 (581)
T ss_pred c-------ccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCC-CC
Confidence 1 0111223334 458999999985 689999877665 4478888888 54
No 53
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.47 E-value=0.043 Score=55.54 Aligned_cols=53 Identities=32% Similarity=0.268 Sum_probs=45.2
Q ss_pred CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecC-hHHHHHHHHHHHCCCEEEEEECC
Q 012750 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFG-NVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~GakVVaVsD~ 284 (457)
.-++|..|++.. +++++.+++|++|+|+|-| .||.-+|.+|.++|+.|. ++++
T Consensus 136 ~~PcTp~avi~l----L~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVt-v~hs 189 (285)
T PRK14191 136 FVPATPMGVMRL----LKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVS-VCHI 189 (285)
T ss_pred CCCCcHHHHHHH----HHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEE-EEeC
Confidence 357899888654 5567999999999999988 999999999999999987 6655
No 54
>PRK06932 glycerate dehydrogenase; Provisional
Probab=96.45 E-value=0.066 Score=54.75 Aligned_cols=109 Identities=23% Similarity=0.299 Sum_probs=70.5
Q ss_pred CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccc
Q 012750 248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHE 327 (457)
Q Consensus 248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~ 327 (457)
.++.|+||.|+|+|++|+.+|+.|...|.+|++. |... +. .. ... ..+-++++. .
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~-~~~~----~~-----~~---------~~~-----~~~l~ell~-~ 197 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYA-EHKG----AS-----VC---------REG-----YTPFEEVLK-Q 197 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEE-CCCc----cc-----cc---------ccc-----cCCHHHHHH-h
Confidence 3589999999999999999999999999999864 3321 00 00 000 112344553 6
Q ss_pred cceeeccccC-----Cccccccccccc-ceEEEecCCCCC-CHHHH-HHHHhCCCe-Eecccc
Q 012750 328 CDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHPT-DPEAD-EILSKRGVT-ILPDIY 381 (457)
Q Consensus 328 ~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~~a~-~iL~~rGI~-viPD~l 381 (457)
||+++-+... +.|+.+...++| --+++.-|=+++ ..+|- +.|.+.-|. ..=|+.
T Consensus 198 sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~ 260 (314)
T PRK06932 198 ADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVL 260 (314)
T ss_pred CCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecC
Confidence 8998877643 445555555554 467888888884 55443 677776664 344443
No 55
>PRK12861 malic enzyme; Reviewed
Probab=96.43 E-value=0.04 Score=62.58 Aligned_cols=178 Identities=24% Similarity=0.267 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhhhhCCCCceecCcccCCCCCCCCCcchHHHHHHHHHHHH
Q 012750 164 ERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEALL 243 (457)
Q Consensus 164 e~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi~d~~~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~~~~l 243 (457)
+.+. .|++++.+-.|. |-=+|++... ---+.++|++... -|+. .+.-.-||-=+..++..++
T Consensus 119 d~~v-~~v~a~~~~fg~---i~lED~~~p~--~f~il~~~~~~~~--------ipvf----~DD~qGTa~v~lA~llnal 180 (764)
T PRK12861 119 DKLV-DIIAGLEPTFGG---INLEDIKAPE--CFTVERKLRERMK--------IPVF----HDDQHGTAITVSAAFINGL 180 (764)
T ss_pred HHHH-HHHHHHHhhcCC---ceeeeccCch--HHHHHHHHHhcCC--------CCee----ccccchHHHHHHHHHHHHH
Confidence 4466 889999887754 4456766432 2234566664211 1221 1222347777777888889
Q ss_pred HHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC---EEEEEECCCCeeeCCCC--CCHHHHHHhHhhcCCcccCCCCeec
Q 012750 244 AEHGQAIRDLTFVIQGFGNVGSWAARLIHERGG---KVIAVSDITGAVKNADG--IDIHKLLAHKDKTGSLKDFDGGDSM 318 (457)
Q Consensus 244 ~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga---kVVaVsD~~G~iynp~G--LDi~~L~~~~~~~g~~~~~~~~~~i 318 (457)
+..|.+++..||++.|.|.-|..++++|.+.|. +|+ +.|++|.++.... ++..+. .+.+.+ + ..
T Consensus 181 ~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~-~~D~~Gli~~~r~~~l~~~k~-~~a~~~----~-----~~ 249 (764)
T PRK12861 181 KVVGKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIW-VTDIEGVVYRGRTTLMDPDKE-RFAQET----D-----AR 249 (764)
T ss_pred HHhCCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEE-EEcCCCeeeCCCcccCCHHHH-HHHhhc----C-----CC
Confidence 988999999999999999999999999999998 566 8999999998553 543222 122211 0 01
Q ss_pred CCCcccccccceeeccccCCccccccccccc-ceEEEecCCCCC---CHHHHHHHHhCCC
Q 012750 319 EPSELLAHECDVLIPCALGGVLKRENAADVK-AKFIIEAANHPT---DPEADEILSKRGV 374 (457)
Q Consensus 319 ~~~ell~~~~DIliPaA~~~~It~~na~~i~-akiIvEgAN~p~---t~~a~~iL~~rGI 374 (457)
+-.|.+. .+||||=++..+.+|++-+.... =.||---|| |+ ||+ +..+.+|-
T Consensus 250 ~L~eai~-~advliG~S~~g~ft~e~v~~Ma~~PIIFaLsN-PtpE~~pe--~a~~~~g~ 305 (764)
T PRK12861 250 TLAEVIG-GADVFLGLSAGGVLKAEMLKAMAARPLILALAN-PTPEIFPE--LAHATRDD 305 (764)
T ss_pred CHHHHHh-cCCEEEEcCCCCCCCHHHHHHhccCCEEEECCC-CCccCCHH--HHHhcCCC
Confidence 2234444 36999999999999998877763 357777777 54 444 34444443
No 56
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=96.43 E-value=0.0021 Score=55.67 Aligned_cols=90 Identities=27% Similarity=0.389 Sum_probs=52.4
Q ss_pred ecChHHHHHHHHHHHC----CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccc-cccceeec
Q 012750 259 GFGNVGSWAARLIHER----GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA-HECDVLIP 333 (457)
Q Consensus 259 GfGnVG~~~a~~L~~~----GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~-~~~DIliP 333 (457)
|||+||+.+++.|.+. +.+|++|+|++ .+.+++ ...... .. ....+.+++++ .++||+|+
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~------~~~~~~-~~-------~~~~~~~~~~~~~~~dvvVE 65 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKD------WAASFP-DE-------AFTTDLEELIDDPDIDVVVE 65 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETT------HHHHHT-HS-------CEESSHHHHHTHTT-SEEEE
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhh------hhhhcc-cc-------cccCCHHHHhcCcCCCEEEE
Confidence 8999999999999876 68999999999 777766 111110 00 11112345554 47888888
Q ss_pred cccCCcccccccccccceEEEecCCCCCCHHHHHHHHhCCCeEecccccccCCce
Q 012750 334 CALGGVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYANSGGVT 388 (457)
Q Consensus 334 aA~~~~It~~na~~i~akiIvEgAN~p~t~~a~~iL~~rGI~viPD~laNaGGVi 388 (457)
|+..+. . .+.-...-++|+.| +.+|.|...
T Consensus 66 ~t~~~~---------------------~-~~~~~~~L~~G~~V---Vt~nk~ala 95 (117)
T PF03447_consen 66 CTSSEA---------------------V-AEYYEKALERGKHV---VTANKGALA 95 (117)
T ss_dssp -SSCHH---------------------H-HHHHHHHHHTTCEE---EES-HHHHH
T ss_pred CCCchH---------------------H-HHHHHHHHHCCCeE---EEECHHHhh
Confidence 843221 1 12233445689988 457887664
No 57
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.40 E-value=0.05 Score=55.39 Aligned_cols=53 Identities=21% Similarity=0.198 Sum_probs=45.3
Q ss_pred CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
-.++|.+|++.. +++.+.+++|++|+|+| .|.||..+|.+|.+.|+.|+ |+++
T Consensus 137 ~~PcTp~ai~~l----l~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVt-v~~~ 190 (296)
T PRK14188 137 LVPCTPLGCMML----LRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVT-IAHS 190 (296)
T ss_pred CcCCCHHHHHHH----HHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEE-EECC
Confidence 357899888665 45568999999999999 99999999999999999998 6653
No 58
>PRK07574 formate dehydrogenase; Provisional
Probab=96.39 E-value=0.044 Score=57.78 Aligned_cols=114 Identities=17% Similarity=0.200 Sum_probs=73.1
Q ss_pred CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCee-cCCCccccc
Q 012750 248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDS-MEPSELLAH 326 (457)
Q Consensus 248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~-i~~~ell~~ 326 (457)
.++.|++|.|+|+|++|+.+|+.|...|.+|++ .|.+ ..+.+... .. +.+. .+.++++ .
T Consensus 188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~-~dr~-------~~~~~~~~----~~-------g~~~~~~l~ell-~ 247 (385)
T PRK07574 188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHY-TDRH-------RLPEEVEQ----EL-------GLTYHVSFDSLV-S 247 (385)
T ss_pred eecCCCEEEEECCCHHHHHHHHHHHhCCCEEEE-ECCC-------CCchhhHh----hc-------CceecCCHHHHh-h
Confidence 358999999999999999999999999999984 3442 22211110 00 1111 2334555 4
Q ss_pred ccceeeccccC-----Cccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCCe-Eecccc
Q 012750 327 ECDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHPT-DPEA-DEILSKRGVT-ILPDIY 381 (457)
Q Consensus 327 ~~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~~a-~~iL~~rGI~-viPD~l 381 (457)
.|||++-+... +.|+++....+| -.+++.-|-+++ ..+| .+.|++.-|. ..=|+.
T Consensus 248 ~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~ 311 (385)
T PRK07574 248 VCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVW 311 (385)
T ss_pred cCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecC
Confidence 79999888753 445555555553 368888888885 3333 4678877664 444443
No 59
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=96.36 E-value=0.054 Score=55.27 Aligned_cols=111 Identities=18% Similarity=0.314 Sum_probs=72.9
Q ss_pred CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccc
Q 012750 248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHE 327 (457)
Q Consensus 248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~ 327 (457)
.+|.|++|.|+|||++|+.+|+++...|.+|++ .|..+.-. .. ++ +..+-++++. .
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~-~d~~~~~~-~~------------------~~---~~~~l~ell~-~ 196 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVY-YSTSGKNK-NE------------------EY---ERVSLEELLK-T 196 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhcCCEEEE-ECCCcccc-cc------------------Cc---eeecHHHHhh-c
Confidence 468999999999999999999999999999985 34432100 00 11 1223345553 6
Q ss_pred cceeeccccC-----Cccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCCeEeccccc
Q 012750 328 CDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHPT-DPEA-DEILSKRGVTILPDIYA 382 (457)
Q Consensus 328 ~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~~a-~~iL~~rGI~viPD~la 382 (457)
||+++-+... +.|+++...++| --+++.-|=+++ ..+| .+.|++.-|...=|+..
T Consensus 197 sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~AaLDV~~ 259 (311)
T PRK08410 197 SDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIYAGLDVLE 259 (311)
T ss_pred CCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeEEEEecCC
Confidence 8988777643 355566666664 468888888884 4444 36787766664455543
No 60
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.32 E-value=0.01 Score=62.85 Aligned_cols=119 Identities=22% Similarity=0.305 Sum_probs=70.1
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCc
Q 012750 230 ATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSL 309 (457)
Q Consensus 230 aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~ 309 (457)
.||.+++.+ +++..+..+.|++|+|+|+|++|+.+|+.+...|++|+ |.|.+ +....+... .
T Consensus 176 g~g~s~~~~---i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~Vi-V~d~d----------p~r~~~A~~-~--- 237 (406)
T TIGR00936 176 GTGQSTIDG---ILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVI-VTEVD----------PIRALEAAM-D--- 237 (406)
T ss_pred ccchhHHHH---HHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEE-EEeCC----------hhhHHHHHh-c---
Confidence 466655543 34445677999999999999999999999999999987 56542 222222111 1
Q ss_pred ccCCCCeecCCCcccccccceeeccccC-Ccccccccccccc-eEEEecCCCC--CCHHH-HHHHHh
Q 012750 310 KDFDGGDSMEPSELLAHECDVLIPCALG-GVLKRENAADVKA-KFIIEAANHP--TDPEA-DEILSK 371 (457)
Q Consensus 310 ~~~~~~~~i~~~ell~~~~DIliPaA~~-~~It~~na~~i~a-kiIvEgAN~p--~t~~a-~~iL~~ 371 (457)
+....+.++.+ ..+||+|.|+-. +.|+.+....++- .+++-.+-.+ ++.++ .+.+.+
T Consensus 238 ----G~~v~~leeal-~~aDVVItaTG~~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~ 299 (406)
T TIGR00936 238 ----GFRVMTMEEAA-KIGDIFITATGNKDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVE 299 (406)
T ss_pred ----CCEeCCHHHHH-hcCCEEEECCCCHHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhh
Confidence 12222223443 378999988643 4566555555432 3444444433 44333 344444
No 61
>PLN02928 oxidoreductase family protein
Probab=96.30 E-value=0.1 Score=54.08 Aligned_cols=125 Identities=21% Similarity=0.332 Sum_probs=74.0
Q ss_pred CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCC--CCeecCCCccc
Q 012750 247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFD--GGDSMEPSELL 324 (457)
Q Consensus 247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~--~~~~i~~~ell 324 (457)
+.++.|+++.|+|+|++|+.+|+.|...|.+|++ .|.+.. ++ ......+.. .....+. .....+-++++
T Consensus 154 ~~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~-~dr~~~---~~---~~~~~~~~~--~~~~~~~~~~~~~~~L~ell 224 (347)
T PLN02928 154 GDTLFGKTVFILGYGAIGIELAKRLRPFGVKLLA-TRRSWT---SE---PEDGLLIPN--GDVDDLVDEKGGHEDIYEFA 224 (347)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEE-ECCCCC---hh---hhhhhcccc--ccccccccccCcccCHHHHH
Confidence 3469999999999999999999999999999985 454311 00 000000000 0000000 01112223444
Q ss_pred ccccceeecccc-----CCccccccccccc-ceEEEecCCCCC-CHHHH-HHHHhCCCe-Eecccc
Q 012750 325 AHECDVLIPCAL-----GGVLKRENAADVK-AKFIIEAANHPT-DPEAD-EILSKRGVT-ILPDIY 381 (457)
Q Consensus 325 ~~~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~~a~-~iL~~rGI~-viPD~l 381 (457)
. .|||++-|.. .+.|+++....+| -.+++.-|=+++ ..+|- +.|.+.-|. ..=|+.
T Consensus 225 ~-~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~ 289 (347)
T PLN02928 225 G-EADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVA 289 (347)
T ss_pred h-hCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccC
Confidence 3 6899988875 3456666666664 468888888884 55543 567666553 344554
No 62
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=96.26 E-value=0.028 Score=59.37 Aligned_cols=124 Identities=27% Similarity=0.357 Sum_probs=88.7
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCE---EEEEECCCCeeeCCC-CCCHHH-HHHhH
Q 012750 229 AATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGK---VIAVSDITGAVKNAD-GIDIHK-LLAHK 303 (457)
Q Consensus 229 ~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Gak---VVaVsD~~G~iynp~-GLDi~~-L~~~~ 303 (457)
.-||-=+..++-.+++..|.+|+..+|++.|.|.-|-..+++|...|.+ |+ +.|+.|.+|+.. -++..+ ..++.
T Consensus 176 qGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~-~~D~~G~l~~~r~~~~~~~~k~~~a 254 (432)
T COG0281 176 QGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIF-VVDRKGLLYDGREDLTMNQKKYAKA 254 (432)
T ss_pred cHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEE-EEecCCcccCCCcccccchHHHHHH
Confidence 3477777778888899999999999999999999999999999999984 55 899999999743 211111 11111
Q ss_pred -hhcCCcccCCCCeecCCCcccccccceeeccccCCcccccccccccc-eEEEecCCCCCCHHH
Q 012750 304 -DKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVKA-KFIIEAANHPTDPEA 365 (457)
Q Consensus 304 -~~~g~~~~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i~a-kiIvEgAN~p~t~~a 365 (457)
+.++... + +.--..+|||+=|+..+++|++-++.... .+|---|| |+ ||+
T Consensus 255 ~~~~~~~~--------~--~~~~~~adv~iG~S~~G~~t~e~V~~Ma~~PiIfalaN-P~-pEi 306 (432)
T COG0281 255 IEDTGERT--------L--DLALAGADVLIGVSGVGAFTEEMVKEMAKHPIIFALAN-PT-PEI 306 (432)
T ss_pred Hhhhcccc--------c--cccccCCCEEEEcCCCCCcCHHHHHHhccCCEEeecCC-CC-ccC
Confidence 1221111 1 12345899999999999999987777533 57777777 54 544
No 63
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=96.24 E-value=0.016 Score=59.66 Aligned_cols=108 Identities=29% Similarity=0.357 Sum_probs=64.8
Q ss_pred CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecC-CCcccc
Q 012750 247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSME-PSELLA 325 (457)
Q Consensus 247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~-~~ell~ 325 (457)
|.++.|+||-|+|||++|+.+|+.|...|.+|++ .|.. ..-+ .....+...++ -+++|.
T Consensus 137 g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~-~d~~------~~~~-------------~~~~~~~~~~~~Ld~lL~ 196 (324)
T COG0111 137 GTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIG-YDPY------SPRE-------------RAGVDGVVGVDSLDELLA 196 (324)
T ss_pred cccccCCEEEEECCCHHHHHHHHHHHhCCCeEEE-ECCC------Cchh-------------hhccccceecccHHHHHh
Confidence 4578999999999999999999999999999995 3331 1100 00111112122 234443
Q ss_pred cccceeecccc-----CCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCCe
Q 012750 326 HECDVLIPCAL-----GGVLKRENAADVK-AKFIIEAANHPT-DPEA-DEILSKRGVT 375 (457)
Q Consensus 326 ~~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~~a-~~iL~~rGI~ 375 (457)
.|||++-... .+.|+.+...++| --+++..|=+++ ..+| .+.|.+.-|.
T Consensus 197 -~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~ 253 (324)
T COG0111 197 -EADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIA 253 (324)
T ss_pred -hCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcc
Confidence 6777765542 2455555556653 227777777774 3333 2455555454
No 64
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=96.23 E-value=0.015 Score=58.71 Aligned_cols=107 Identities=19% Similarity=0.277 Sum_probs=68.5
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccc--cccce
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA--HECDV 330 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~--~~~DI 330 (457)
++|.|+|+|++|..+++.|.+.|.+|+ +.|.+ .+.+.+..+. + ...+. +.+++.+ ..+|+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~-~~dr~----------~~~~~~l~~~-g-~~~~~-----s~~~~~~~~~~~dv 62 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCV-GYDHD----------QDAVKAMKED-R-TTGVA-----NLRELSQRLSAPRV 62 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEE-EEECC----------HHHHHHHHHc-C-CcccC-----CHHHHHhhcCCCCE
Confidence 379999999999999999999999987 45542 3444444332 1 11111 2223332 36898
Q ss_pred eeccccCCcccccc----cccc-cceEEEecCCCC--CCHHHHHHHHhCCCeEec
Q 012750 331 LIPCALGGVLKREN----AADV-KAKFIIEAANHP--TDPEADEILSKRGVTILP 378 (457)
Q Consensus 331 liPaA~~~~It~~n----a~~i-~akiIvEgAN~p--~t~~a~~iL~~rGI~viP 378 (457)
++-|.... ...+. ++.+ +-++|++..|.. .|.+..+.+.++|+.++-
T Consensus 63 Ii~~vp~~-~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vd 116 (298)
T TIGR00872 63 VWVMVPHG-IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLD 116 (298)
T ss_pred EEEEcCch-HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEe
Confidence 87775444 22222 2223 237899999984 566667789999998764
No 65
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=96.20 E-value=0.11 Score=51.57 Aligned_cols=131 Identities=17% Similarity=0.188 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcc
Q 012750 231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLK 310 (457)
Q Consensus 231 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~ 310 (457)
-+.|...+++. .+...+++++.|.|.|.+|+.++..|.+.|++|+ |.|.+ .+++.+..++-.
T Consensus 100 D~~G~~~~l~~----~~~~~~~k~vliiGaGg~g~aia~~L~~~g~~v~-v~~R~----------~~~~~~la~~~~--- 161 (270)
T TIGR00507 100 DGIGLVSDLER----LIPLRPNQRVLIIGAGGAARAVALPLLKADCNVI-IANRT----------VSKAEELAERFQ--- 161 (270)
T ss_pred CHHHHHHHHHh----cCCCccCCEEEEEcCcHHHHHHHHHHHHCCCEEE-EEeCC----------HHHHHHHHHHHh---
Confidence 56677776543 3455678999999999999999999999998776 66653 233333332211
Q ss_pred cCCCCeecCCCcccccccceeeccccCCccccc-----cccccc-ceEEEecCCCCCCHHHHHHHHhCCCeEecc
Q 012750 311 DFDGGDSMEPSELLAHECDVLIPCALGGVLKRE-----NAADVK-AKFIIEAANHPTDPEADEILSKRGVTILPD 379 (457)
Q Consensus 311 ~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~-----na~~i~-akiIvEgAN~p~t~~a~~iL~~rGI~viPD 379 (457)
.+......+.++....++||+|-|+..+.-... ....++ -++|++-.-.|....--+..+++|+.++..
T Consensus 162 ~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~p~~T~ll~~A~~~G~~~vdG 236 (270)
T TIGR00507 162 RYGEIQAFSMDELPLHRVDLIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVYNPGETPFLAEAKSLGTKTIDG 236 (270)
T ss_pred hcCceEEechhhhcccCccEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEeccCCCCCHHHHHHHHCCCeeeCC
Confidence 111111122222222479999999865432111 112232 358888888774224556678888877543
No 66
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=96.16 E-value=0.013 Score=60.63 Aligned_cols=104 Identities=22% Similarity=0.324 Sum_probs=73.2
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcC
Q 012750 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTG 307 (457)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g 307 (457)
..-||.+.+-++..+ .+.-+.|+.++|.|||.||+..|..|...|++|+ |++.+- +.+|....
T Consensus 188 rYGtgqS~~DgI~Ra---Tn~liaGK~vVV~GYG~vGrG~A~~~rg~GA~Vi-VtEvDP---------I~AleA~M---- 250 (420)
T COG0499 188 RYGTGQSLLDGILRA---TNVLLAGKNVVVAGYGWVGRGIAMRLRGMGARVI-VTEVDP---------IRALEAAM---- 250 (420)
T ss_pred ccccchhHHHHHHhh---hceeecCceEEEecccccchHHHHHhhcCCCeEE-EEecCc---------hHHHHHhh----
Confidence 345777777666554 3455899999999999999999999999999988 888742 44443322
Q ss_pred CcccCCCCeecCCCcccccccceeecccc-CCcccccccccccceEEE
Q 012750 308 SLKDFDGGDSMEPSELLAHECDVLIPCAL-GGVLKRENAADVKAKFII 354 (457)
Q Consensus 308 ~~~~~~~~~~i~~~ell~~~~DIliPaA~-~~~It~~na~~i~akiIv 354 (457)
.+| +.++-++.. ...||||-|+. .++|+.+.....+=..|+
T Consensus 251 --dGf---~V~~m~~Aa-~~gDifiT~TGnkdVi~~eh~~~MkDgaIl 292 (420)
T COG0499 251 --DGF---RVMTMEEAA-KTGDIFVTATGNKDVIRKEHFEKMKDGAIL 292 (420)
T ss_pred --cCc---EEEEhHHhh-hcCCEEEEccCCcCccCHHHHHhccCCeEE
Confidence 222 333222222 25699999975 479999988888665555
No 67
>PLN03139 formate dehydrogenase; Provisional
Probab=96.15 E-value=0.07 Score=56.27 Aligned_cols=114 Identities=19% Similarity=0.256 Sum_probs=72.3
Q ss_pred CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccc
Q 012750 247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLA 325 (457)
Q Consensus 247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~ 325 (457)
+.++.|++|.|+|+|++|+.+|+.|...|.+|++ .|.+ ..+.+... +. +.+.. +.++++
T Consensus 194 ~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~-~d~~-------~~~~~~~~----~~-------g~~~~~~l~ell- 253 (386)
T PLN03139 194 AYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLY-HDRL-------KMDPELEK----ET-------GAKFEEDLDAML- 253 (386)
T ss_pred CcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEE-ECCC-------CcchhhHh----hc-------CceecCCHHHHH-
Confidence 3469999999999999999999999999999974 4543 22222111 11 11112 334555
Q ss_pred cccceeeccccC-----Cccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCCe-Eeccc
Q 012750 326 HECDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHPT-DPEA-DEILSKRGVT-ILPDI 380 (457)
Q Consensus 326 ~~~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~~a-~~iL~~rGI~-viPD~ 380 (457)
..|||++-|... +.|+++....++ -.+++.-|=+++ ..+| .+.|++.-|. +.=|+
T Consensus 254 ~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV 317 (386)
T PLN03139 254 PKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDV 317 (386)
T ss_pred hhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcC
Confidence 469999887653 345444444443 368888888884 4444 3677777665 34444
No 68
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=96.14 E-value=0.013 Score=63.19 Aligned_cols=171 Identities=18% Similarity=0.132 Sum_probs=99.1
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhh---cC-CcccCCCCeecCCCccccc--
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDK---TG-SLKDFDGGDSMEPSELLAH-- 326 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~---~g-~~~~~~~~~~i~~~ell~~-- 326 (457)
.+|.|+|.|++|+++|+.|.++|.+|+ +.|.+ .+...++.+. .+ .+..+ -+++++.+.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~-v~dr~----------~~~~~~l~~~~~~~g~~i~~~-----~s~~e~v~~l~ 65 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKIS-VYNRT----------YEKTEEFVKKAKEGNTRVKGY-----HTLEELVNSLK 65 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEE-EEeCC----------HHHHHHHHHhhhhcCCcceec-----CCHHHHHhcCC
Confidence 379999999999999999999999977 55553 3444333322 11 11111 134455532
Q ss_pred ccceeeccccCCccccc----ccccc-cceEEEecCCCC--CCHHHHHHHHhCCCeEecccccccCCc---------ee-
Q 012750 327 ECDVLIPCALGGVLKRE----NAADV-KAKFIIEAANHP--TDPEADEILSKRGVTILPDIYANSGGV---------TV- 389 (457)
Q Consensus 327 ~~DIliPaA~~~~It~~----na~~i-~akiIvEgAN~p--~t~~a~~iL~~rGI~viPD~laNaGGV---------i~- 389 (457)
++|+++-|........+ ..+.+ +-++|+++.|.- .|.+-.+.+.++||.++=--+ +||. .+
T Consensus 66 ~~d~Iil~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapV--SGG~~gA~~G~~lm~G 143 (470)
T PTZ00142 66 KPRKVILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGV--SGGEEGARYGPSLMPG 143 (470)
T ss_pred CCCEEEEEeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCC--CCCHHHHhcCCEEEEe
Confidence 68877766444333322 23333 358999999985 356666789999999863221 1222 11
Q ss_pred ---hhHHHhhhc----cc-------CCCC--------HHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHH
Q 012750 390 ---SYFEWVQNI----QG-------FMWE--------EDKVNNELRRYMIRAFHNIKGMCQ-THNCNLRMGAFTL 441 (457)
Q Consensus 390 ---S~~E~~qn~----~~-------~~w~--------~e~v~~~l~~~m~~~~~~v~~~a~-~~~~~~r~aA~~~ 441 (457)
..|+.++.+ .. ..|- -.-|+..++.-+-+.+.+.++.++ ..++++.+.+.++
T Consensus 144 G~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~ 218 (470)
T PTZ00142 144 GNKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVF 218 (470)
T ss_pred CCHHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Confidence 123333221 00 0110 123455566666777778888876 5788777665544
No 69
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=96.12 E-value=0.051 Score=55.87 Aligned_cols=113 Identities=21% Similarity=0.224 Sum_probs=71.7
Q ss_pred CCCCCCCeEEEEecChHHHHHHHHHH-HCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccc
Q 012750 247 GQAIRDLTFVIQGFGNVGSWAARLIH-ERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA 325 (457)
Q Consensus 247 g~~l~g~~vaIqGfGnVG~~~a~~L~-~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~ 325 (457)
|.+|.|+|+.|+|+|++|+.+|+.|. ..|.+|++ .|... +.+... . + +.+..+-++++.
T Consensus 140 g~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~-~~~~~--------~~~~~~----~------~-~~~~~~l~ell~ 199 (323)
T PRK15409 140 GTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILY-NARRH--------HKEAEE----R------F-NARYCDLDTLLQ 199 (323)
T ss_pred cCCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEE-ECCCC--------chhhHH----h------c-CcEecCHHHHHH
Confidence 45799999999999999999999997 78999984 44321 001000 0 0 122234455553
Q ss_pred cccceeeccccC-----Cccccccccccc-ceEEEecCCCCC-CHHHH-HHHHhCCCe-Eeccc
Q 012750 326 HECDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHPT-DPEAD-EILSKRGVT-ILPDI 380 (457)
Q Consensus 326 ~~~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~~a~-~iL~~rGI~-viPD~ 380 (457)
.||+++-+... +.|+.+...++| -.+++.-|-+++ ..+|- +.|++.-|. ..=|+
T Consensus 200 -~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDV 262 (323)
T PRK15409 200 -ESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDV 262 (323)
T ss_pred -hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeec
Confidence 88998877643 345555555553 468888888885 44443 677766664 33443
No 70
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.04 E-value=0.0024 Score=56.41 Aligned_cols=112 Identities=23% Similarity=0.242 Sum_probs=64.3
Q ss_pred CeEEEEec-ChHHHHHHHHHHH-CCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccccccc
Q 012750 253 LTFVIQGF-GNVGSWAARLIHE-RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECD 329 (457)
Q Consensus 253 ~~vaIqGf-GnVG~~~a~~L~~-~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~D 329 (457)
.||+|.|+ |++|+.+++.+.+ .+.+++++.|++..- -.|-|+.++...... +.... +.++++.. +|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~--~~g~d~g~~~~~~~~--------~~~v~~~l~~~~~~-~D 69 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSA--KVGKDVGELAGIGPL--------GVPVTDDLEELLEE-AD 69 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTST--TTTSBCHHHCTSST---------SSBEBS-HHHHTTH--S
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcc--cccchhhhhhCcCCc--------ccccchhHHHhccc-CC
Confidence 47999999 9999999999988 799999999997622 135566555432110 11111 12345555 99
Q ss_pred eeeccccCCccccccccc---ccceEEEecCCCCCCHHHHHHHHh----CCCeEec
Q 012750 330 VLIPCALGGVLKRENAAD---VKAKFIIEAANHPTDPEADEILSK----RGVTILP 378 (457)
Q Consensus 330 IliPaA~~~~It~~na~~---i~akiIvEgAN~p~t~~a~~iL~~----rGI~viP 378 (457)
|+|.++..... .+|++. -+..+|++=.- .+++-.+.|++ -++++.|
T Consensus 70 VvIDfT~p~~~-~~~~~~~~~~g~~~ViGTTG--~~~~~~~~l~~~a~~~~vl~a~ 122 (124)
T PF01113_consen 70 VVIDFTNPDAV-YDNLEYALKHGVPLVIGTTG--FSDEQIDELEELAKKIPVLIAP 122 (124)
T ss_dssp EEEEES-HHHH-HHHHHHHHHHT-EEEEE-SS--SHHHHHHHHHHHTTTSEEEE-S
T ss_pred EEEEcCChHHh-HHHHHHHHhCCCCEEEECCC--CCHHHHHHHHHHhccCCEEEeC
Confidence 99999743322 223332 26677774322 34554455554 4445544
No 71
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=96.03 E-value=0.042 Score=55.44 Aligned_cols=122 Identities=23% Similarity=0.245 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHC----CC-------EEEEEECCCCeeeCCCC-CCHHH
Q 012750 231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHER----GG-------KVIAVSDITGAVKNADG-IDIHK 298 (457)
Q Consensus 231 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~----Ga-------kVVaVsD~~G~iynp~G-LDi~~ 298 (457)
||-=+..++-.+++..|.+++..||++.|.|.-|.+++++|.+. |. ++. +.|++|-+++... ++. .
T Consensus 4 Ta~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~-~vD~~Gll~~~r~~l~~-~ 81 (279)
T cd05312 4 TAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIW-LVDSKGLLTKDRKDLTP-F 81 (279)
T ss_pred HHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEE-EEcCCCeEeCCCCcchH-H
Confidence 55556667788888889999999999999999999999999765 87 554 8899999998654 321 1
Q ss_pred HHHhHhhcCCcccCCCCeecCCCccc-ccccceeecccc-CCcccccccccc----cceEEEecCCCCC
Q 012750 299 LLAHKDKTGSLKDFDGGDSMEPSELL-AHECDVLIPCAL-GGVLKRENAADV----KAKFIIEAANHPT 361 (457)
Q Consensus 299 L~~~~~~~g~~~~~~~~~~i~~~ell-~~~~DIliPaA~-~~~It~~na~~i----~akiIvEgAN~p~ 361 (457)
...+.+.... ....+-.|.+ ..++||||=++. ++.+|++-++.. +=.||---+| |+
T Consensus 82 ~~~~a~~~~~------~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSN-Pt 143 (279)
T cd05312 82 KKPFARKDEE------KEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSN-PT 143 (279)
T ss_pred HHHHHhhcCc------ccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCC-cC
Confidence 2222222110 0111223444 459999999984 689999877765 3468887887 54
No 72
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.00 E-value=0.023 Score=56.29 Aligned_cols=109 Identities=18% Similarity=0.181 Sum_probs=66.1
Q ss_pred CeEEEEec-ChHHHHHHHHHHH-CCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccce
Q 012750 253 LTFVIQGF-GNVGSWAARLIHE-RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDV 330 (457)
Q Consensus 253 ~~vaIqGf-GnVG~~~a~~L~~-~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DI 330 (457)
++|+|.|+ |.+|+..++.+.+ .+.++++++|.+..-... . .. ..+..+ -+.++++. ++|+
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~----------~-~~-~~i~~~-----~dl~~ll~-~~Dv 63 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVG----------Q-GA-LGVAIT-----DDLEAVLA-DADV 63 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccc----------c-CC-CCcccc-----CCHHHhcc-CCCE
Confidence 58999998 9999999998876 579999999985421100 0 00 011111 12234554 7999
Q ss_pred eeccccCCccccccccc---ccceEEEecCCCCCCH-HHHHHH---HhCCCeEeccccc
Q 012750 331 LIPCALGGVLKRENAAD---VKAKFIIEAANHPTDP-EADEIL---SKRGVTILPDIYA 382 (457)
Q Consensus 331 liPaA~~~~It~~na~~---i~akiIvEgAN~p~t~-~a~~iL---~~rGI~viPD~la 382 (457)
+|.|+..+.. .+++.. -+..+|++ ....++ +++++. ++.++++.|.+.-
T Consensus 64 Vid~t~p~~~-~~~~~~al~~G~~vvig--ttG~s~~~~~~l~~aa~~~~v~~s~n~s~ 119 (257)
T PRK00048 64 LIDFTTPEAT-LENLEFALEHGKPLVIG--TTGFTEEQLAELEEAAKKIPVVIAPNFSI 119 (257)
T ss_pred EEECCCHHHH-HHHHHHHHHcCCCEEEE--CCCCCHHHHHHHHHHhcCCCEEEECcchH
Confidence 9999865544 444444 35678876 334454 333332 3356777777643
No 73
>PRK13529 malate dehydrogenase; Provisional
Probab=95.99 E-value=0.19 Score=55.17 Aligned_cols=183 Identities=21% Similarity=0.255 Sum_probs=118.6
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhhhhCCCCceecCcccCCCCCCCCCcchHHHHHHH
Q 012750 159 SNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYA 238 (457)
Q Consensus 159 s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi~d~~~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~ 238 (457)
+-.|-..+...|++++.... |..-|-=+|++... ---+.+.|+.- .| ++. +.-.-||-=+..+
T Consensus 219 ~g~eY~~f~defv~av~~~~-P~~~I~~EDf~~~~--af~iL~ryr~~---i~-~Fn----------DDiQGTaaV~LAg 281 (563)
T PRK13529 219 RGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQKN--ARRILERYRDE---IC-TFN----------DDIQGTGAVTLAG 281 (563)
T ss_pred chHHHHHHHHHHHHHHHHhC-CCeEEehhhcCCch--HHHHHHHhccC---CC-eec----------cccchHHHHHHHH
Confidence 44567788999999998776 54445567776542 23345666531 11 111 2223577777778
Q ss_pred HHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHH----CCC-------EEEEEECCCCeeeCCCCCCHHHHHH-hHhhc
Q 012750 239 TEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHE----RGG-------KVIAVSDITGAVKNADGIDIHKLLA-HKDKT 306 (457)
Q Consensus 239 ~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~----~Ga-------kVVaVsD~~G~iynp~GLDi~~L~~-~~~~~ 306 (457)
+-.+++..|.+++..||++.|.|..|-++|++|.+ .|. ++. +.|++|-++...+ |+..-.. +.+..
T Consensus 282 ll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~-~vD~~GLl~~~r~-~l~~~k~~fa~~~ 359 (563)
T PRK13529 282 LLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFF-MVDRQGLLTDDMP-DLLDFQKPYARKR 359 (563)
T ss_pred HHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEE-EEcCCCeEeCCCC-cchHHHHHHhhhc
Confidence 88889988999999999999999999999999876 587 555 8899999998765 3222222 22221
Q ss_pred CCcccCCCC-eecCCCccc-ccccceeecccc-CCccccccccccc----ceEEEecCCCCC
Q 012750 307 GSLKDFDGG-DSMEPSELL-AHECDVLIPCAL-GGVLKRENAADVK----AKFIIEAANHPT 361 (457)
Q Consensus 307 g~~~~~~~~-~~i~~~ell-~~~~DIliPaA~-~~~It~~na~~i~----akiIvEgAN~p~ 361 (457)
..+..++.. ...+-.|.+ ..+.||||=++. .+.+|++-++... =.||---+| |+
T Consensus 360 ~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt 420 (563)
T PRK13529 360 EELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLSN-PT 420 (563)
T ss_pred ccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCC-cC
Confidence 111111110 001222333 457899999987 6899998776653 367777777 54
No 74
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.99 E-value=0.089 Score=53.16 Aligned_cols=53 Identities=23% Similarity=0.228 Sum_probs=45.0
Q ss_pred CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecC-hHHHHHHHHHHHCCCEEEEEECC
Q 012750 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFG-NVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~GakVVaVsD~ 284 (457)
-.+.|..|++.. +++++.+++|++|+|.|.+ .||+.++.+|...|+.|. ++++
T Consensus 131 ~~PcTp~av~~l----l~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVt-v~hs 184 (279)
T PRK14178 131 FAPCTPNGIMTL----LHEYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVT-ICHS 184 (279)
T ss_pred CCCCCHHHHHHH----HHHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeE-EEec
Confidence 357899988655 5567999999999999987 999999999999999887 6655
No 75
>PRK06436 glycerate dehydrogenase; Provisional
Probab=95.97 E-value=0.058 Score=55.01 Aligned_cols=103 Identities=20% Similarity=0.287 Sum_probs=66.6
Q ss_pred CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccc
Q 012750 248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHE 327 (457)
Q Consensus 248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~ 327 (457)
..|.|++|.|.|+|++|+.+|+.|...|.+|++. |.+. .+.|.. . ...+.++++ .+
T Consensus 118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~-~r~~---~~~~~~---------------~----~~~~l~ell-~~ 173 (303)
T PRK06436 118 KLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAY-TRSY---VNDGIS---------------S----IYMEPEDIM-KK 173 (303)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEE-CCCC---cccCcc---------------c----ccCCHHHHH-hh
Confidence 3589999999999999999999998899999854 4431 111110 0 011334555 37
Q ss_pred cceeeccccC-----Cccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCC
Q 012750 328 CDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHPT-DPEA-DEILSKRGV 374 (457)
Q Consensus 328 ~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~~a-~~iL~~rGI 374 (457)
||+++-|... +.|+.+....++ -.+++.-+=+++ ..++ .+.|.++-+
T Consensus 174 aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i 228 (303)
T PRK06436 174 SDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHND 228 (303)
T ss_pred CCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCc
Confidence 8999888753 345544455543 357777777774 4444 467777645
No 76
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=95.92 E-value=0.022 Score=57.04 Aligned_cols=112 Identities=18% Similarity=0.221 Sum_probs=68.1
Q ss_pred CCCCeEEEEecChHHHHHHHHHHH--CCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccc
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHE--RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHE 327 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~--~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~ 327 (457)
++.+||.|+|+|.+|+..++.|.+ .+.++++|+|.+ .+...+..++.+...-+ -+.++++. +
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~----------~~~a~~~a~~~g~~~~~-----~~~eell~-~ 67 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRD----------PQRHADFIWGLRRPPPV-----VPLDQLAT-H 67 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCC----------HHHHHHHHHhcCCCccc-----CCHHHHhc-C
Confidence 456899999999999999998876 478999888873 33444433332211111 13455654 6
Q ss_pred cceeeccccCCccccccccc-c--cceEEEecCCCC-CCHHHHHHHHhCCCeE-ec
Q 012750 328 CDVLIPCALGGVLKRENAAD-V--KAKFIIEAANHP-TDPEADEILSKRGVTI-LP 378 (457)
Q Consensus 328 ~DIliPaA~~~~It~~na~~-i--~akiIvEgAN~p-~t~~a~~iL~~rGI~v-iP 378 (457)
+|+++.|+..... .+-+.. + +.-++++..-.. ...+..+..+++|+.+ +|
T Consensus 68 ~D~Vvi~tp~~~h-~e~~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l~v~ 122 (271)
T PRK13302 68 ADIVVEAAPASVL-RAIVEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQIIVP 122 (271)
T ss_pred CCEEEECCCcHHH-HHHHHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCEEEEc
Confidence 8999999876543 332222 2 335677632211 1234445677888865 55
No 77
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=95.92 E-value=0.01 Score=49.14 Aligned_cols=90 Identities=28% Similarity=0.260 Sum_probs=56.3
Q ss_pred eEEEEecChHHHHHHHHHHHCC---CEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccce
Q 012750 254 TFVIQGFGNVGSWAARLIHERG---GKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDV 330 (457)
Q Consensus 254 ~vaIqGfGnVG~~~a~~L~~~G---akVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DI 330 (457)
|+.|+|+||+|..+++-|.+.| .+|.-+++.+ .+.+.+++++.+.- ....++.++++ ++||
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~----------~~~~~~~~~~~~~~-----~~~~~~~~~~~-~adv 64 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRS----------PEKAAELAKEYGVQ-----ATADDNEEAAQ-EADV 64 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESS----------HHHHHHHHHHCTTE-----EESEEHHHHHH-HTSE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCc----------HHHHHHHHHhhccc-----cccCChHHhhc-cCCE
Confidence 6889999999999999999999 8887554553 56666666553310 01113445555 8999
Q ss_pred eeccccCCccccc--c-cccccceEEEecCCC
Q 012750 331 LIPCALGGVLKRE--N-AADVKAKFIIEAANH 359 (457)
Q Consensus 331 liPaA~~~~It~~--n-a~~i~akiIvEgAN~ 359 (457)
++.|-....+.+- . ....+-|+|+.-+|+
T Consensus 65 vilav~p~~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 65 VILAVKPQQLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp EEE-S-GGGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred EEEEECHHHHHHHHHHHhhccCCCEEEEeCCC
Confidence 9999765544321 1 122355677665553
No 78
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=95.90 E-value=0.26 Score=52.33 Aligned_cols=99 Identities=18% Similarity=0.356 Sum_probs=62.8
Q ss_pred CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccc--cc
Q 012750 249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL--AH 326 (457)
Q Consensus 249 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell--~~ 326 (457)
++.+++|.|.|.|.+|+.+++.|...|++-|.|++.+ .+.+.+..++.+. ..++.+++. -.
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~----------~~ra~~la~~~g~-------~~~~~~~~~~~l~ 241 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRT----------LERAEELAEEFGG-------EAIPLDELPEALA 241 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCC----------HHHHHHHHHHcCC-------cEeeHHHHHHHhc
Confidence 5889999999999999999999999998434466653 2344333333221 111111211 13
Q ss_pred ccceeeccccC--Ccccccccccc------cceEEEecCCCC-CCHH
Q 012750 327 ECDVLIPCALG--GVLKRENAADV------KAKFIIEAANHP-TDPE 364 (457)
Q Consensus 327 ~~DIliPaA~~--~~It~~na~~i------~akiIvEgAN~p-~t~~ 364 (457)
++||+|-|+.. ..++.+.++.. +-.+++.-|+-. +.|+
T Consensus 242 ~aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Prdid~~ 288 (423)
T PRK00045 242 EADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPRDIEPE 288 (423)
T ss_pred cCCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCCCCccc
Confidence 78999999753 46666655442 346899998643 5554
No 79
>PRK06487 glycerate dehydrogenase; Provisional
Probab=95.89 E-value=0.062 Score=55.00 Aligned_cols=108 Identities=22% Similarity=0.276 Sum_probs=70.1
Q ss_pred CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccc
Q 012750 248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHE 327 (457)
Q Consensus 248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~ 327 (457)
.++.|++|.|+|+|++|+.+|+.|...|.+|++. |..+ ++++. +..+-++++. .
T Consensus 144 ~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~-~~~~---~~~~~---------------------~~~~l~ell~-~ 197 (317)
T PRK06487 144 VELEGKTLGLLGHGELGGAVARLAEAFGMRVLIG-QLPG---RPARP---------------------DRLPLDELLP-Q 197 (317)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEE-CCCC---Ccccc---------------------cccCHHHHHH-h
Confidence 4689999999999999999999999999999864 3321 11100 0112334443 7
Q ss_pred cceeeccccC-----Cccccccccccc-ceEEEecCCCCC-CHHHH-HHHHhCCCe-Eecccc
Q 012750 328 CDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHPT-DPEAD-EILSKRGVT-ILPDIY 381 (457)
Q Consensus 328 ~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~~a~-~iL~~rGI~-viPD~l 381 (457)
||+++-+... +.|+.+...++| --+++.-|=+++ ..+|- +.|++.-|. ..=|+.
T Consensus 198 sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf 260 (317)
T PRK06487 198 VDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVL 260 (317)
T ss_pred CCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecC
Confidence 7888876643 456666666664 367888888884 44443 577766664 334443
No 80
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=95.88 E-value=0.32 Score=51.74 Aligned_cols=106 Identities=21% Similarity=0.235 Sum_probs=67.0
Q ss_pred HHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCC
Q 012750 242 LLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPS 321 (457)
Q Consensus 242 ~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ 321 (457)
.+++.-.++.+++|.|+|.|.+|+.+++.|.++|++-+.|++.+ .+...++.++.+ ....++-+
T Consensus 171 la~~~~~~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt----------~~ra~~La~~~~------~~~~~~~~ 234 (414)
T PRK13940 171 LAKRQLDNISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRT----------IEKAQKITSAFR------NASAHYLS 234 (414)
T ss_pred HHHHHhcCccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCC----------HHHHHHHHHHhc------CCeEecHH
Confidence 33433345899999999999999999999999998666688774 233333333321 11222223
Q ss_pred cccc--cccceeeccccC--CcccccccccccceEEEecCCCC-CCHH
Q 012750 322 ELLA--HECDVLIPCALG--GVLKRENAADVKAKFIIEAANHP-TDPE 364 (457)
Q Consensus 322 ell~--~~~DIliPaA~~--~~It~~na~~i~akiIvEgAN~p-~t~~ 364 (457)
++.+ .++||+|-|+.. .+|+.+.... +-.++++-|+-. +.|+
T Consensus 235 ~l~~~l~~aDiVI~aT~a~~~vi~~~~~~~-~~~~~iDLavPRdidp~ 281 (414)
T PRK13940 235 ELPQLIKKADIIIAAVNVLEYIVTCKYVGD-KPRVFIDISIPQALDPK 281 (414)
T ss_pred HHHHHhccCCEEEECcCCCCeeECHHHhCC-CCeEEEEeCCCCCCCcc
Confidence 3322 379999999854 4666554432 345888887743 5554
No 81
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.81 E-value=0.14 Score=51.61 Aligned_cols=133 Identities=17% Similarity=0.153 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcc
Q 012750 231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLK 310 (457)
Q Consensus 231 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~ 310 (457)
-+.|...+++. .+.++++++|.|.|.|.+|+.++..|.+.|++=|.|.|.+ .++..+..+.-+.
T Consensus 110 D~~G~~~~l~~----~~~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~----------~~ka~~la~~l~~-- 173 (284)
T PRK12549 110 DWSGFAESFRR----GLPDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD----------PARAAALADELNA-- 173 (284)
T ss_pred CHHHHHHHHHh----hccCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC----------HHHHHHHHHHHHh--
Confidence 46677777653 3456788999999999999999999999998545577774 2333333221100
Q ss_pred cCCCCeecCCCccc--ccccceeeccccCCccccc----ccccc-cceEEEecCCCCCCHHHHHHHHhCCCeEecc
Q 012750 311 DFDGGDSMEPSELL--AHECDVLIPCALGGVLKRE----NAADV-KAKFIIEAANHPTDPEADEILSKRGVTILPD 379 (457)
Q Consensus 311 ~~~~~~~i~~~ell--~~~~DIliPaA~~~~It~~----na~~i-~akiIvEgAN~p~t~~a~~iL~~rGI~viPD 379 (457)
.++.......+++. -.++||+|-|+.-+.-... +...+ +..+|.+-.-+|....--+.-+++|..++..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~~~~~~l~~~~~v~DivY~P~~T~ll~~A~~~G~~~~~G 249 (284)
T PRK12549 174 RFPAARATAGSDLAAALAAADGLVHATPTGMAKHPGLPLPAELLRPGLWVADIVYFPLETELLRAARALGCRTLDG 249 (284)
T ss_pred hCCCeEEEeccchHhhhCCCCEEEECCcCCCCCCCCCCCCHHHcCCCcEEEEeeeCCCCCHHHHHHHHCCCeEecC
Confidence 11111111112221 1379999999754321111 11223 3457888888885333455567788776543
No 82
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.81 E-value=0.13 Score=51.97 Aligned_cols=54 Identities=22% Similarity=0.194 Sum_probs=45.3
Q ss_pred CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
..++|.+|+... +++++.+++|++++|+| ...||+-++.+|.++|+.|+ ++.++
T Consensus 135 ~~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt-ichs~ 189 (282)
T PRK14169 135 VVASTPYGIMAL----LDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVT-IAHSK 189 (282)
T ss_pred CCCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EECCC
Confidence 457999988655 55679999999999999 57799999999999999987 77664
No 83
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=95.78 E-value=0.17 Score=55.31 Aligned_cols=156 Identities=21% Similarity=0.228 Sum_probs=88.6
Q ss_pred CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccc
Q 012750 247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLA 325 (457)
Q Consensus 247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~ 325 (457)
|.++.|++|.|+|+|++|+.+|+.|...|.+|++. |. . .+.+... +. +.+.. +.++++.
T Consensus 133 g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~-d~-------~-~~~~~~~----~~-------g~~~~~~l~ell~ 192 (525)
T TIGR01327 133 GTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAY-DP-------Y-ISPERAE----QL-------GVELVDDLDELLA 192 (525)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE-CC-------C-CChhHHH----hc-------CCEEcCCHHHHHh
Confidence 45699999999999999999999999999999853 33 2 1111111 10 11222 2345553
Q ss_pred cccceeeccccC-----Cccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCCe-EecccccccCCceehhHHHhh
Q 012750 326 HECDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHPT-DPEA-DEILSKRGVT-ILPDIYANSGGVTVSYFEWVQ 396 (457)
Q Consensus 326 ~~~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~~a-~~iL~~rGI~-viPD~laNaGGVi~S~~E~~q 396 (457)
.||+++-|... +.|+++....++ -.+++.-|=+++ ..+| .+.|.+..|. ..=|+..+=--. -+.+--..
T Consensus 193 -~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~-~~pL~~~~ 270 (525)
T TIGR01327 193 -RADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPT-DNPLFDLD 270 (525)
T ss_pred -hCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCC-CChhhcCC
Confidence 78999877653 455555555543 357888888884 4444 4678887775 334443332211 12111111
Q ss_pred hc---ccCCCCHHHHHHHHHHHHHHHHHHHH
Q 012750 397 NI---QGFMWEEDKVNNELRRYMIRAFHNIK 424 (457)
Q Consensus 397 n~---~~~~w~~e~v~~~l~~~m~~~~~~v~ 424 (457)
|. .|..|.-++...++...+.+.+.+.+
T Consensus 271 nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~ 301 (525)
T TIGR01327 271 NVIATPHLGASTREAQENVATQVAEQVLDAL 301 (525)
T ss_pred CeEECCCccccHHHHHHHHHHHHHHHHHHHH
Confidence 21 24445445555555554555544443
No 84
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=95.77 E-value=0.12 Score=52.61 Aligned_cols=54 Identities=22% Similarity=0.210 Sum_probs=45.2
Q ss_pred CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
..++|..||... +++.|++++|++++|+| ...||+-++.+|.++|+.|+ ++.++
T Consensus 146 ~~PcTp~avi~l----L~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVt-vchs~ 200 (299)
T PLN02516 146 FLPCTPKGCLEL----LSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVT-VVHSR 200 (299)
T ss_pred CCCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EeCCC
Confidence 357899997655 45679999999999999 57799999999999999887 77663
No 85
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=95.75 E-value=0.3 Score=51.84 Aligned_cols=99 Identities=20% Similarity=0.412 Sum_probs=62.1
Q ss_pred CCCCCeEEEEecChHHHHHHHHHHHCC-CEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccc--c
Q 012750 249 AIRDLTFVIQGFGNVGSWAARLIHERG-GKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL--A 325 (457)
Q Consensus 249 ~l~g~~vaIqGfGnVG~~~a~~L~~~G-akVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell--~ 325 (457)
++.+++|.|+|.|.+|..+++.|...| .+|+ |.|.+ .+...+..++-+. ..++.+++. -
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~-v~~rs----------~~ra~~la~~~g~-------~~i~~~~l~~~l 238 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKIL-IANRT----------YERAEDLAKELGG-------EAVKFEDLEEYL 238 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEE-EEeCC----------HHHHHHHHHHcCC-------eEeeHHHHHHHH
Confidence 488999999999999999999999999 4555 66653 2333333332211 111112221 1
Q ss_pred cccceeecccc--CCcccccccccc-----cceEEEecCCCC-CCHHH
Q 012750 326 HECDVLIPCAL--GGVLKRENAADV-----KAKFIIEAANHP-TDPEA 365 (457)
Q Consensus 326 ~~~DIliPaA~--~~~It~~na~~i-----~akiIvEgAN~p-~t~~a 365 (457)
.++||+|-|+. ...++.+.+... +..+|+.-|+-. ++|+.
T Consensus 239 ~~aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Prdid~~v 286 (417)
T TIGR01035 239 AEADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPRDVDPAV 286 (417)
T ss_pred hhCCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCCCCChhh
Confidence 37999999964 345666655442 234899998533 56653
No 86
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=95.74 E-value=0.053 Score=55.19 Aligned_cols=108 Identities=21% Similarity=0.330 Sum_probs=63.1
Q ss_pred HHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec
Q 012750 239 TEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM 318 (457)
Q Consensus 239 ~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i 318 (457)
++.+...+|. +.+++|+|+|.|.+|+.+++.|...|++.|.|+|.+ .+...+..++.+. ..+
T Consensus 166 v~~a~~~~~~-l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~----------~~ra~~la~~~g~-------~~~ 227 (311)
T cd05213 166 VELAEKIFGN-LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRT----------YERAEELAKELGG-------NAV 227 (311)
T ss_pred HHHHHHHhCC-ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCC----------HHHHHHHHHHcCC-------eEE
Confidence 4444333343 889999999999999999999998887666677763 3444444443221 112
Q ss_pred CCCcccc--cccceeeccccCCcc---cccccccc--cceEEEecCCCC-CCHH
Q 012750 319 EPSELLA--HECDVLIPCALGGVL---KRENAADV--KAKFIIEAANHP-TDPE 364 (457)
Q Consensus 319 ~~~ell~--~~~DIliPaA~~~~I---t~~na~~i--~akiIvEgAN~p-~t~~ 364 (457)
+.+++.+ .++||+|-|+..... -..-.... +-++|++-||.+ +.|+
T Consensus 228 ~~~~~~~~l~~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlavPrdi~~~ 281 (311)
T cd05213 228 PLDELLELLNEADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAVPRDIEPE 281 (311)
T ss_pred eHHHHHHHHhcCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCCCCCCchh
Confidence 2122221 368999998765433 01111111 345788877633 4443
No 87
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.72 E-value=0.16 Score=51.43 Aligned_cols=54 Identities=24% Similarity=0.217 Sum_probs=45.8
Q ss_pred CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
..++|.+|++.. +++++.+++|++++|+| ...||+-++.+|.++|+.|+ +++++
T Consensus 138 ~~PcTp~avi~l----l~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt-~chs~ 192 (284)
T PRK14177 138 YLPCTPYGMVLL----LKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVT-LCHSK 192 (284)
T ss_pred CCCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCC
Confidence 357899998764 55679999999999999 57899999999999999887 77764
No 88
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=95.68 E-value=0.072 Score=60.52 Aligned_cols=120 Identities=26% Similarity=0.321 Sum_probs=88.8
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC---EEEEEECCCCeeeCCC--CCCHHHHHHhH
Q 012750 229 AATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGG---KVIAVSDITGAVKNAD--GIDIHKLLAHK 303 (457)
Q Consensus 229 ~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga---kVVaVsD~~G~iynp~--GLDi~~L~~~~ 303 (457)
.-||-=+..++..+++..|.+++..||++.|.|.-|-.++++|...|. +|+ +.|++|.++... +++..+. .+.
T Consensus 162 ~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~-~~D~~G~i~~~r~~~~~~~k~-~~a 239 (752)
T PRK07232 162 HGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENII-VCDSKGVIYKGRTEGMDEWKA-AYA 239 (752)
T ss_pred chHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEE-EEcCCCeecCCCcccccHHHH-HHh
Confidence 357777778888889989999999999999999999999999999998 565 899999999865 3443322 111
Q ss_pred hhcCCcccCCCCeecCCCcccccccceeeccccCCcccccccccc-cceEEEecCCCCC
Q 012750 304 DKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADV-KAKFIIEAANHPT 361 (457)
Q Consensus 304 ~~~g~~~~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i-~akiIvEgAN~p~ 361 (457)
+. .+ .-+-.|.+.. +||||=++.++.+|++-+... +-.||---|| |+
T Consensus 240 ~~----~~-----~~~l~~~i~~-~~v~iG~s~~g~~~~~~v~~M~~~piifalsN-P~ 287 (752)
T PRK07232 240 VD----TD-----ARTLAEAIEG-ADVFLGLSAAGVLTPEMVKSMADNPIIFALAN-PD 287 (752)
T ss_pred cc----CC-----CCCHHHHHcC-CCEEEEcCCCCCCCHHHHHHhccCCEEEecCC-CC
Confidence 11 00 0122344444 899999999999999877775 3357777777 54
No 89
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.68 E-value=0.16 Score=51.42 Aligned_cols=52 Identities=23% Similarity=0.247 Sum_probs=44.3
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
.++|..|+.. ++++++.+++|++++|+| ...||+-++.+|.++|+.|+ ++++
T Consensus 138 ~PcTp~av~~----lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt-~chs 190 (284)
T PRK14190 138 LPCTPHGILE----LLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVT-YCHS 190 (284)
T ss_pred CCCCHHHHHH----HHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EEeC
Confidence 4689888855 456679999999999999 58899999999999999987 6655
No 90
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=95.68 E-value=0.22 Score=49.81 Aligned_cols=130 Identities=16% Similarity=0.213 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCC-CEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCc
Q 012750 231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERG-GKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSL 309 (457)
Q Consensus 231 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G-akVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~ 309 (457)
.+.|...++++ ..+.+++++++.|.|.|.+|+.++..|.+.| .+|+ |.+++ .+.+.+..++....
T Consensus 105 D~~G~~~~l~~---~~~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~-v~~R~----------~~~a~~l~~~~~~~ 170 (278)
T PRK00258 105 DGIGFVRALEE---RLGVDLKGKRILILGAGGAARAVILPLLDLGVAEIT-IVNRT----------VERAEELAKLFGAL 170 (278)
T ss_pred cHHHHHHHHHh---ccCCCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEE-EEeCC----------HHHHHHHHHHhhhc
Confidence 45666666542 2466889999999999999999999999999 5655 77664 23333333321111
Q ss_pred ccCCCCee-cCCCcccccccceeeccccCCccc-----ccccccc-cceEEEecCCCCCCHHHHHHHHhCCCeEec
Q 012750 310 KDFDGGDS-MEPSELLAHECDVLIPCALGGVLK-----RENAADV-KAKFIIEAANHPTDPEADEILSKRGVTILP 378 (457)
Q Consensus 310 ~~~~~~~~-i~~~ell~~~~DIliPaA~~~~It-----~~na~~i-~akiIvEgAN~p~t~~a~~iL~~rGI~viP 378 (457)
. .... .+..+.+ .++||+|-|+..+.-. +-..+.+ +-++|++-.-+|....--+.-+++|+.++.
T Consensus 171 ~---~~~~~~~~~~~~-~~~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P~~T~ll~~A~~~G~~~~~ 242 (278)
T PRK00258 171 G---KAELDLELQEEL-ADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGPLPTPFLAWAKAQGARTID 242 (278)
T ss_pred c---ceeecccchhcc-ccCCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCCCCCHHHHHHHHCcCeecC
Confidence 0 0011 1111222 4789999998655432 1112223 246888988888433344556777877654
No 91
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=95.68 E-value=0.32 Score=53.44 Aligned_cols=180 Identities=18% Similarity=0.196 Sum_probs=116.9
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhhhhCCCCceecCcccCCCCCCCCCcchHHHHHHH
Q 012750 159 SNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYA 238 (457)
Q Consensus 159 s~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi~d~~~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~ 238 (457)
+..|-..+...|++++.... |..-|-=+|++... ---+.+.|+.. .| ++. +.-.-||-=+..+
T Consensus 221 ~g~eY~~f~defv~av~~~~-P~~~Iq~EDf~~~n--af~iL~kyr~~---i~-~Fn----------DDiQGTaaV~lAg 283 (559)
T PTZ00317 221 DDDEYYELLDEFMEAVSSRW-PNAVVQFEDFSNNH--CFDLLERYQNK---YR-CFN----------DDIQGTGAVIAAG 283 (559)
T ss_pred ChhhHHHHHHHHHHHHHHhC-CCeEEehhhcCCcc--HHHHHHHhccC---CC-Eec----------ccchhHHHHHHHH
Confidence 45667789999999998877 54445567877542 23345667632 11 111 2223476667778
Q ss_pred HHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHH----CCC-------EEEEEECCCCeeeCCCC--CCHHHHHHhHhh
Q 012750 239 TEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHE----RGG-------KVIAVSDITGAVKNADG--IDIHKLLAHKDK 305 (457)
Q Consensus 239 ~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~----~Ga-------kVVaVsD~~G~iynp~G--LDi~~L~~~~~~ 305 (457)
+-.+++..|.+++..||++.|.|..|-.+|++|.+ .|. ++. +.|++|-+++..+ |+..+. .+.+.
T Consensus 284 ll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~-~vD~~GLl~~~r~~~l~~~k~-~fa~~ 361 (559)
T PTZ00317 284 FLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFY-LVDSKGLVTTTRGDKLAKHKV-PFART 361 (559)
T ss_pred HHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEE-EEcCCCeEeCCCCccccHHHH-HHhcc
Confidence 88888888999999999999999999999998873 687 565 8899999998764 332221 12111
Q ss_pred cCCcccCCCCeecCCCccc-ccccceeecccc-CCccccccccccc----ceEEEecCCCCC
Q 012750 306 TGSLKDFDGGDSMEPSELL-AHECDVLIPCAL-GGVLKRENAADVK----AKFIIEAANHPT 361 (457)
Q Consensus 306 ~g~~~~~~~~~~i~~~ell-~~~~DIliPaA~-~~~It~~na~~i~----akiIvEgAN~p~ 361 (457)
.. .-++....+-.|.+ ..+.||||=++. .+.+|++-++... =.||---+| |+
T Consensus 362 ~~---~~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rPIIFaLSN-Pt 419 (559)
T PTZ00317 362 DI---SAEDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERPIIFPLSN-PT 419 (559)
T ss_pred cc---ccccccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCC-CC
Confidence 00 00000011222333 457899999986 6899998776643 467777777 54
No 92
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.67 E-value=0.16 Score=51.49 Aligned_cols=54 Identities=26% Similarity=0.266 Sum_probs=45.2
Q ss_pred CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
..++|.+||... ++++|.+++|++++|+| ...||.-++.+|.++++.|+ ++.++
T Consensus 134 ~~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt-ichs~ 188 (287)
T PRK14173 134 LEPCTPAGVVRL----LKHYGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVT-LAHSK 188 (287)
T ss_pred CCCCCHHHHHHH----HHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EeCCC
Confidence 357899888655 55679999999999999 57899999999999999887 77653
No 93
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.65 E-value=0.19 Score=50.86 Aligned_cols=53 Identities=23% Similarity=0.231 Sum_probs=44.3
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
.++|..|+... +++++.+++|++++|+| ...||+-++.+|.++++.|+ ++.++
T Consensus 137 ~PcTp~avi~l----l~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVt-ichs~ 190 (282)
T PRK14182 137 RPCTPAGVMRM----LDEARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVT-IAHSR 190 (282)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCC
Confidence 46898888655 56669999999999999 57799999999999999887 77653
No 94
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.64 E-value=0.17 Score=51.53 Aligned_cols=53 Identities=23% Similarity=0.202 Sum_probs=44.2
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
.++|.+|++. +++++|.+++|++++|+| ...||+-++.+|.++|+.|+ ++.+.
T Consensus 138 ~PcTp~aii~----lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVt-v~hs~ 191 (297)
T PRK14186 138 RSCTPAGVMR----LLRSQQIDIAGKKAVVVGRSILVGKPLALMLLAANATVT-IAHSR 191 (297)
T ss_pred CCCCHHHHHH----HHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EeCCC
Confidence 4689888855 456679999999999999 57799999999999999987 66553
No 95
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=95.62 E-value=0.025 Score=61.01 Aligned_cols=108 Identities=17% Similarity=0.153 Sum_probs=67.8
Q ss_pred EEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhc--C-CcccCCCCeecCCCcccc--cccc
Q 012750 255 FVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKT--G-SLKDFDGGDSMEPSELLA--HECD 329 (457)
Q Consensus 255 vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~--g-~~~~~~~~~~i~~~ell~--~~~D 329 (457)
|.|+|.|++|+++|+-|.++|.+|+ |.|.+ .+.+.+..++. + .+..+ -+..++.+ .+||
T Consensus 2 IG~IGLG~MG~~mA~nL~~~G~~V~-v~drt----------~~~~~~l~~~~~~g~~~~~~-----~s~~e~v~~l~~~d 65 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADHGFTVS-VYNRT----------PEKTDEFLAEHAKGKKIVGA-----YSIEEFVQSLERPR 65 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhcCCeEE-EEeCC----------HHHHHHHHhhccCCCCceec-----CCHHHHHhhcCCCC
Confidence 7899999999999999999999987 55543 34444444331 1 11111 12234442 2688
Q ss_pred eeeccccCCcccccc----cccc-cceEEEecCCCC--CCHHHHHHHHhCCCeEec
Q 012750 330 VLIPCALGGVLKREN----AADV-KAKFIIEAANHP--TDPEADEILSKRGVTILP 378 (457)
Q Consensus 330 IliPaA~~~~It~~n----a~~i-~akiIvEgAN~p--~t~~a~~iL~~rGI~viP 378 (457)
+++-|...+....+. ++.+ .-++|+++.|.- .|.+..+.|.++||.++-
T Consensus 66 vIil~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvd 121 (467)
T TIGR00873 66 KIMLMVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVG 121 (467)
T ss_pred EEEEECCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEc
Confidence 877775543333322 2333 347999999953 355556789999998864
No 96
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.60 E-value=0.18 Score=50.94 Aligned_cols=54 Identities=19% Similarity=0.175 Sum_probs=45.3
Q ss_pred CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
..+.|..|++.. +++++.+++|++++|+| ...||.-++.+|.++|+.|. +++++
T Consensus 137 ~~PcTp~av~~l----L~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt-~chs~ 191 (278)
T PRK14172 137 FLPCTPNSVITL----IKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVT-ICHSK 191 (278)
T ss_pred CcCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EeCCC
Confidence 357899888654 55678999999999999 57899999999999999887 77764
No 97
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.58 E-value=0.17 Score=55.39 Aligned_cols=108 Identities=30% Similarity=0.296 Sum_probs=69.5
Q ss_pred CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccccc
Q 012750 247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAH 326 (457)
Q Consensus 247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~ 326 (457)
|.++.|++|.|+|+|++|+.+|+.|...|.+|++. |.+. +.+... .. +.+..+.++++.
T Consensus 135 g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~-d~~~--------~~~~~~----~~-------g~~~~~l~ell~- 193 (526)
T PRK13581 135 GVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAY-DPYI--------SPERAA----QL-------GVELVSLDELLA- 193 (526)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE-CCCC--------ChhHHH----hc-------CCEEEcHHHHHh-
Confidence 44689999999999999999999999999999853 3321 111111 00 222334455554
Q ss_pred ccceeeccccC-----Cccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCCe
Q 012750 327 ECDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHPT-DPEA-DEILSKRGVT 375 (457)
Q Consensus 327 ~~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~~a-~~iL~~rGI~ 375 (457)
.||+++-|... +.|+.+....+| -.+++.-|-+++ +.+| .+.|++.-|.
T Consensus 194 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ 250 (526)
T PRK13581 194 RADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVA 250 (526)
T ss_pred hCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCee
Confidence 78998877654 345555555543 367777788774 5444 3677776664
No 98
>PLN00203 glutamyl-tRNA reductase
Probab=95.54 E-value=0.52 Score=51.68 Aligned_cols=118 Identities=14% Similarity=0.196 Sum_probs=71.9
Q ss_pred HHHH-HHHHHHHHhCC-CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCccc
Q 012750 234 GVVY-ATEALLAEHGQ-AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKD 311 (457)
Q Consensus 234 Gv~~-~~~~~l~~~g~-~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~ 311 (457)
+|.+ +++.+.+.++. ++.+++|.|+|.|.+|+.+++.|...|++-|-|.+.+ .+.+.++.++.+..
T Consensus 246 Sv~s~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs----------~era~~La~~~~g~-- 313 (519)
T PLN00203 246 SVSSAAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRS----------EERVAALREEFPDV-- 313 (519)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCC----------HHHHHHHHHHhCCC--
Confidence 3443 33444445664 5999999999999999999999999997434366553 23444433332111
Q ss_pred CCCCeecCCCccc--ccccceeeccc--cCCccccccccccc--------ceEEEecCCCC-CCHHH
Q 012750 312 FDGGDSMEPSELL--AHECDVLIPCA--LGGVLKRENAADVK--------AKFIIEAANHP-TDPEA 365 (457)
Q Consensus 312 ~~~~~~i~~~ell--~~~~DIliPaA--~~~~It~~na~~i~--------akiIvEgAN~p-~t~~a 365 (457)
.....+.+++. -.++||+|-|+ ...+|+.+.++.+. -+++++-|.-. +.|+.
T Consensus 314 --~i~~~~~~dl~~al~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdIdp~v 378 (519)
T PLN00203 314 --EIIYKPLDEMLACAAEADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVGACV 378 (519)
T ss_pred --ceEeecHhhHHHHHhcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCcccc
Confidence 00111112222 24899999886 34577877766642 25899988854 55654
No 99
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=95.52 E-value=0.21 Score=45.45 Aligned_cols=53 Identities=23% Similarity=0.335 Sum_probs=43.5
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
-+.|..|+. ++++++|.+++|++|.|.| -..||.-++.+|.++|+.|. +++++
T Consensus 8 ~p~t~~a~~----~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~-~~~~~ 61 (140)
T cd05212 8 VSPVAKAVK----ELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVY-SCDWK 61 (140)
T ss_pred cccHHHHHH----HHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EeCCC
Confidence 356777764 4556679999999999999 58899999999999999998 66664
No 100
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.50 E-value=0.052 Score=51.01 Aligned_cols=124 Identities=23% Similarity=0.248 Sum_probs=76.0
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCC
Q 012750 230 ATGRGVVYATEALLAEHGQAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGS 308 (457)
Q Consensus 230 aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~ 308 (457)
-|+.-.+..++..++++|.++++++++|.|. |.+|+.+++.|.+.|++|+.+ +.+ .+.+.+..+.-..
T Consensus 6 ~ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~-~R~----------~~~~~~l~~~l~~ 74 (194)
T cd01078 6 TTAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLV-GRD----------LERAQKAADSLRA 74 (194)
T ss_pred HHHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE-cCC----------HHHHHHHHHHHHh
Confidence 4777777888888888899999999999996 999999999999999988844 442 2333332221100
Q ss_pred cccCCCCeec---CCCccc--ccccceeeccccCCcccccccc-ccc-ceEEEecCCCC-CCHHH
Q 012750 309 LKDFDGGDSM---EPSELL--AHECDVLIPCALGGVLKRENAA-DVK-AKFIIEAANHP-TDPEA 365 (457)
Q Consensus 309 ~~~~~~~~~i---~~~ell--~~~~DIliPaA~~~~It~~na~-~i~-akiIvEgAN~p-~t~~a 365 (457)
..+. ..... +.+++. -.+||++|-|+..+..+..... ..+ .++|++-+..| ++++.
T Consensus 75 ~~~~-~~~~~~~~~~~~~~~~~~~~diVi~at~~g~~~~~~~~~~~~~~~vv~D~~~~~~~~~~~ 138 (194)
T cd01078 75 RFGE-GVGAVETSDDAARAAAIKGADVVFAAGAAGVELLEKLAWAPKPLAVAADVNAVPPVGIEG 138 (194)
T ss_pred hcCC-cEEEeeCCCHHHHHHHHhcCCEEEECCCCCceechhhhcccCceeEEEEccCCCCCCccc
Confidence 0000 00111 112221 1379999998866553222222 223 46888866655 56653
No 101
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=95.49 E-value=0.012 Score=52.74 Aligned_cols=108 Identities=17% Similarity=0.241 Sum_probs=55.7
Q ss_pred CCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccce
Q 012750 251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDV 330 (457)
Q Consensus 251 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DI 330 (457)
...+|.|+|.|+||.++++.|.+.|..|++|...+ .....+... .++.....+.++++. ++|+
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs----------~~sa~~a~~------~~~~~~~~~~~~~~~-~aDl 71 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRS----------PASAERAAA------FIGAGAILDLEEILR-DADL 71 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCH----------H-HHHHHHC--------TT-----TTGGGC-C-SE
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC----------ccccccccc------ccccccccccccccc-cCCE
Confidence 34789999999999999999999999999886652 111111111 122223334455554 8999
Q ss_pred eeccccCCccccc--cccc----ccceEEEecCCCCCCHHHHHHHHhCCCeE
Q 012750 331 LIPCALGGVLKRE--NAAD----VKAKFIIEAANHPTDPEADEILSKRGVTI 376 (457)
Q Consensus 331 liPaA~~~~It~~--na~~----i~akiIvEgAN~p~t~~a~~iL~~rGI~v 376 (457)
++-|..-+.|.+- .... .+-++|+=-+ +-.+-+.-+-++++|..+
T Consensus 72 v~iavpDdaI~~va~~La~~~~~~~g~iVvHtS-Ga~~~~vL~p~~~~Ga~~ 122 (127)
T PF10727_consen 72 VFIAVPDDAIAEVAEQLAQYGAWRPGQIVVHTS-GALGSDVLAPARERGAIV 122 (127)
T ss_dssp EEE-S-CCHHHHHHHHHHCC--S-TT-EEEES--SS--GGGGHHHHHTT-EE
T ss_pred EEEEechHHHHHHHHHHHHhccCCCCcEEEECC-CCChHHhhhhHHHCCCeE
Confidence 9998665555421 1111 1345666433 223444445577777654
No 102
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.45 E-value=0.046 Score=55.35 Aligned_cols=52 Identities=35% Similarity=0.428 Sum_probs=45.2
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEECC
Q 012750 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGN-VGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~ 284 (457)
.++|..|++.. +++++.+++|++++|+|-++ ||+-++.+|..+|+.|+ ++++
T Consensus 144 ~PcTp~av~~l----l~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt-v~hs 196 (287)
T PRK14176 144 VPCTPHGVIRA----LEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVS-VCHV 196 (287)
T ss_pred CCCcHHHHHHH----HHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEE-EEec
Confidence 57899988655 45678999999999999988 99999999999999987 7775
No 103
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.43 E-value=0.22 Score=50.41 Aligned_cols=82 Identities=23% Similarity=0.247 Sum_probs=60.8
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhc
Q 012750 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKT 306 (457)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~ 306 (457)
.++|..||+.. +++++.+++|++|+|+| ...||+-++.+|.++++.|+ ++.++- + |+++
T Consensus 137 ~PcTp~avi~l----L~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt-~chs~T----~---nl~~-------- 196 (282)
T PRK14166 137 LPCTPLGVMKL----LKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVS-VCHIKT----K---DLSL-------- 196 (282)
T ss_pred cCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCCC----C---CHHH--------
Confidence 46899888665 45569999999999999 57799999999999999988 776632 1 1111
Q ss_pred CCcccCCCCeecCCCcccccccceeeccccC-Ccccccccc
Q 012750 307 GSLKDFDGGDSMEPSELLAHECDVLIPCALG-GVLKRENAA 346 (457)
Q Consensus 307 g~~~~~~~~~~i~~~ell~~~~DIliPaA~~-~~It~~na~ 346 (457)
....+||+|-|+.. +.|+++.+.
T Consensus 197 -----------------~~~~ADIvIsAvGkp~~i~~~~vk 220 (282)
T PRK14166 197 -----------------YTRQADLIIVAAGCVNLLRSDMVK 220 (282)
T ss_pred -----------------HHhhCCEEEEcCCCcCccCHHHcC
Confidence 13478999888754 667766554
No 104
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.41 E-value=0.22 Score=50.44 Aligned_cols=83 Identities=20% Similarity=0.286 Sum_probs=61.0
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhc
Q 012750 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKT 306 (457)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~ 306 (457)
.+.|..|+... ++++|.+++|++|+|+|- ..||+-++.+|.++|+.|+ ++.++. + |+++
T Consensus 137 ~PcTp~avi~l----L~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt-ichs~T----~---~l~~-------- 196 (284)
T PRK14170 137 VPCTPAGIIEL----IKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVT-IAHSRT----K---DLPQ-------- 196 (284)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCCC----C---CHHH--------
Confidence 57898888655 456799999999999995 6799999999999999887 776642 1 1111
Q ss_pred CCcccCCCCeecCCCcccccccceeeccccC-Cccccccccc
Q 012750 307 GSLKDFDGGDSMEPSELLAHECDVLIPCALG-GVLKRENAAD 347 (457)
Q Consensus 307 g~~~~~~~~~~i~~~ell~~~~DIliPaA~~-~~It~~na~~ 347 (457)
....+||+|-|+.. +.|+.+.+..
T Consensus 197 -----------------~~~~ADIvI~AvG~~~~i~~~~vk~ 221 (284)
T PRK14170 197 -----------------VAKEADILVVATGLAKFVKKDYIKP 221 (284)
T ss_pred -----------------HHhhCCEEEEecCCcCccCHHHcCC
Confidence 12367888888754 6677666554
No 105
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.39 E-value=0.12 Score=52.32 Aligned_cols=52 Identities=15% Similarity=0.173 Sum_probs=43.9
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEECC
Q 012750 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGN-VGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~ 284 (457)
.+.|-+|++..++ +.+.+++|++|+|+|.|+ ||+.++.+|.++|+.|+ |+++
T Consensus 139 ~p~T~~gii~~L~----~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVt-v~~~ 191 (283)
T PRK14192 139 GSATPAGIMRLLK----AYNIELAGKHAVVVGRSAILGKPMAMMLLNANATVT-ICHS 191 (283)
T ss_pred cCCcHHHHHHHHH----HcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEE-EEeC
Confidence 4678888876654 568999999999999998 99999999999999654 7776
No 106
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.39 E-value=0.19 Score=51.06 Aligned_cols=54 Identities=17% Similarity=0.163 Sum_probs=45.2
Q ss_pred CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
-.+.|..|++. ++++.+.+++|++++|+| ...||+-++.+|.++++.|+ ++.++
T Consensus 138 ~~PcTp~av~~----lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVt-ichs~ 192 (288)
T PRK14171 138 FIPCTALGCLA----VIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVT-ICHSK 192 (288)
T ss_pred CcCCCHHHHHH----HHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCC
Confidence 35789998755 455679999999999999 57799999999999999887 77764
No 107
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=95.35 E-value=0.044 Score=54.23 Aligned_cols=166 Identities=19% Similarity=0.290 Sum_probs=99.2
Q ss_pred eEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccc---cc--c
Q 012750 254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELL---AH--E 327 (457)
Q Consensus 254 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell---~~--~ 327 (457)
++-++|.|.+|.++++.|.+.|..|| +.|. |.+++.+.+... ++.. +.++++ .. -
T Consensus 2 ~iGmiGLGrMG~n~v~rl~~~ghdvV-~yD~----------n~~av~~~~~~g--------a~~a~sl~el~~~L~~pr~ 62 (300)
T COG1023 2 QIGMIGLGRMGANLVRRLLDGGHDVV-GYDV----------NQTAVEELKDEG--------ATGAASLDELVAKLSAPRI 62 (300)
T ss_pred cceeeccchhhHHHHHHHHhCCCeEE-EEcC----------CHHHHHHHHhcC--------CccccCHHHHHHhcCCCcE
Confidence 46789999999999999999999999 4554 345555555432 1111 112322 11 2
Q ss_pred cceeeccc-cCCcccccccccccc-eEEEecCCCCCC--HHHHHHHHhCCCeEecccccccCCcee----------hhHH
Q 012750 328 CDVLIPCA-LGGVLKRENAADVKA-KFIIEAANHPTD--PEADEILSKRGVTILPDIYANSGGVTV----------SYFE 393 (457)
Q Consensus 328 ~DIliPaA-~~~~It~~na~~i~a-kiIvEgAN~p~t--~~a~~iL~~rGI~viPD~laNaGGVi~----------S~~E 393 (457)
+=+.+|++ +.+.+-++-++.+.+ -+|++|.|.-.- ..-.+.|.++||.++- .--+||+-- ..-|
T Consensus 63 vWlMvPag~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD--~GTSGG~~G~~~G~~lMiGG~~~ 140 (300)
T COG1023 63 VWLMVPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLD--VGTSGGVWGAERGYCLMIGGDEE 140 (300)
T ss_pred EEEEccCCCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEe--ccCCCCchhhhcCceEEecCcHH
Confidence 34678886 444444444555544 799999998863 4444689999999873 355677722 1111
Q ss_pred Hhhhcc-----------cCCCC--------HHHHHHHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHH
Q 012750 394 WVQNIQ-----------GFMWE--------EDKVNNELRRYMIRAFHNIKGMCQT--HNCNLRMGAFT 440 (457)
Q Consensus 394 ~~qn~~-----------~~~w~--------~e~v~~~l~~~m~~~~~~v~~~a~~--~~~~~r~aA~~ 440 (457)
-++.+. ++-.. -.-|...+|.-|-+++.+=++.-++ +..++.+.|-+
T Consensus 141 a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~v 208 (300)
T COG1023 141 AVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEV 208 (300)
T ss_pred HHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 111110 00000 1235566777777888877766654 55677776654
No 108
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=95.33 E-value=0.063 Score=54.17 Aligned_cols=104 Identities=19% Similarity=0.310 Sum_probs=66.0
Q ss_pred eEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccccccceee
Q 012750 254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECDVLI 332 (457)
Q Consensus 254 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~DIli 332 (457)
+|.|+|.|++|..+++.|.+.|.+|+ +.|.+ .+.+.+..+. + .... ++.++. .+||+++
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~-v~d~~----------~~~~~~~~~~-g-------~~~~~s~~~~~-~~aDvVi 62 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQ-VFDVN----------PQAVDALVDK-G-------ATPAASPAQAA-AGAEFVI 62 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEE-EEcCC----------HHHHHHHHHc-C-------CcccCCHHHHH-hcCCEEE
Confidence 79999999999999999999999876 55542 3344333332 1 1111 223333 4789999
Q ss_pred ccccCCc-----ccccc--cccc-cceEEEecCCCCC--CHHHHHHHHhCCCeEe
Q 012750 333 PCALGGV-----LKREN--AADV-KAKFIIEAANHPT--DPEADEILSKRGVTIL 377 (457)
Q Consensus 333 PaA~~~~-----It~~n--a~~i-~akiIvEgAN~p~--t~~a~~iL~~rGI~vi 377 (457)
-|-.... +...+ .+.+ +-++|++-...+. +.+..+.+.++|+.++
T Consensus 63 ~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~l 117 (296)
T PRK15461 63 TMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMM 117 (296)
T ss_pred EecCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEE
Confidence 8865542 22111 2223 3468887777653 4566678999998865
No 109
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=95.31 E-value=0.038 Score=55.06 Aligned_cols=105 Identities=20% Similarity=0.268 Sum_probs=63.3
Q ss_pred CeEEEEecChHHHHHHHHHHHC--CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccccccc
Q 012750 253 LTFVIQGFGNVGSWAARLIHER--GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECD 329 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~--GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~D 329 (457)
++|.|+|+|++|+..++.|.+. +.++++|+|.+ .+...+..+..+ .... +.++++ .++|
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~----------~~~a~~~a~~~~-------~~~~~~~~ell-~~~D 63 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRN----------LEKAENLASKTG-------AKACLSIDELV-EDVD 63 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCC----------HHHHHHHHHhcC-------CeeECCHHHHh-cCCC
Confidence 4899999999999999988775 57889888874 233333322211 1112 345666 6899
Q ss_pred eeeccccCCccccccccc---ccceEEEecC----CCCCCHHHHHHHHhCCCeE
Q 012750 330 VLIPCALGGVLKRENAAD---VKAKFIIEAA----NHPTDPEADEILSKRGVTI 376 (457)
Q Consensus 330 IliPaA~~~~It~~na~~---i~akiIvEgA----N~p~t~~a~~iL~~rGI~v 376 (457)
+++.|+..... .+.+.. -+..+|++.. +-+...+..+..+++|+.+
T Consensus 64 vVvi~a~~~~~-~~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l 116 (265)
T PRK13304 64 LVVECASVNAV-EEVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCKI 116 (265)
T ss_pred EEEEcCChHHH-HHHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEE
Confidence 99999865443 232222 2345666532 2222233445677788654
No 110
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=95.30 E-value=0.044 Score=59.53 Aligned_cols=174 Identities=14% Similarity=0.124 Sum_probs=100.3
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhh---cCCcccCCCCeecCCCccccc--c
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDK---TGSLKDFDGGDSMEPSELLAH--E 327 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~---~g~~~~~~~~~~i~~~ell~~--~ 327 (457)
.+|.++|.|++|+.+|+-|.++|.+|+ |.|.+ .+...++.+. .|. ..+.. .-++.++.+. .
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~-V~NRt----------~~k~~~l~~~~~~~Ga-~~~~~--a~s~~e~v~~l~~ 72 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFPIS-VYNRT----------TSKVDETVERAKKEGN-LPLYG--FKDPEDFVLSIQK 72 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCeEE-EECCC----------HHHHHHHHHhhhhcCC-ccccc--CCCHHHHHhcCCC
Confidence 369999999999999999999999987 66663 3333333321 121 00000 0133444432 5
Q ss_pred cceeeccccCCccccc----ccccc-cceEEEecCCCC--CCHHHHHHHHhCCCeEeccccc------ccCCcee-----
Q 012750 328 CDVLIPCALGGVLKRE----NAADV-KAKFIIEAANHP--TDPEADEILSKRGVTILPDIYA------NSGGVTV----- 389 (457)
Q Consensus 328 ~DIliPaA~~~~It~~----na~~i-~akiIvEgAN~p--~t~~a~~iL~~rGI~viPD~la------NaGGVi~----- 389 (457)
||+++-|-..+...++ -.+.+ +-++|+++.|.. .|.+..+.++++|+.++=--+. -.|-.+.
T Consensus 73 ~dvIi~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~~im~GG~~ 152 (493)
T PLN02350 73 PRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGPSLMPGGSF 152 (493)
T ss_pred CCEEEEECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCCeEEecCCH
Confidence 8888877543322222 22333 458999999985 4666678899999988632221 1121111
Q ss_pred hhHHHhhhc----cc-------CCC--------CHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHH
Q 012750 390 SYFEWVQNI----QG-------FMW--------EEDKVNNELRRYMIRAFHNIKGMCQT-HNCNLRMGAFT 440 (457)
Q Consensus 390 S~~E~~qn~----~~-------~~w--------~~e~v~~~l~~~m~~~~~~v~~~a~~-~~~~~r~aA~~ 440 (457)
..||-++.+ .. ..| --.-|+..++..+...+.+.+..+++ .|+++.+.+.+
T Consensus 153 ~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~v 223 (493)
T PLN02350 153 EAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEV 223 (493)
T ss_pred HHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 112222211 00 011 01234566666677777888888887 58887776655
No 111
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=95.27 E-value=0.26 Score=51.41 Aligned_cols=54 Identities=24% Similarity=0.244 Sum_probs=45.3
Q ss_pred CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
-.+.|..|+. +++++.+.+++|++|+|+| ...||+-++.+|.++++.|+ ++.++
T Consensus 210 f~PCTp~avi----elL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVT-icHs~ 264 (364)
T PLN02616 210 FVPCTPKGCI----ELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVS-IVHSR 264 (364)
T ss_pred CCCCCHHHHH----HHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEE-EeCCC
Confidence 4579999975 4556679999999999999 57899999999999999887 77653
No 112
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.26 E-value=0.3 Score=51.87 Aligned_cols=105 Identities=24% Similarity=0.311 Sum_probs=68.0
Q ss_pred CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccc
Q 012750 247 GQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLA 325 (457)
Q Consensus 247 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~ 325 (457)
+.+|.|+|+.|+|+|++|+.+|+.+...|.+|++. |.... .. ..+.+.. +-++++.
T Consensus 146 ~~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~-d~~~~----------------~~------~~~~~~~~~l~ell~ 202 (409)
T PRK11790 146 SFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFY-DIEDK----------------LP------LGNARQVGSLEELLA 202 (409)
T ss_pred cccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE-CCCcc----------------cc------cCCceecCCHHHHHh
Confidence 35699999999999999999999999999999853 33210 00 0011111 3345553
Q ss_pred cccceeeccccC-----Cccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCCe
Q 012750 326 HECDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHPT-DPEA-DEILSKRGVT 375 (457)
Q Consensus 326 ~~~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~~a-~~iL~~rGI~ 375 (457)
.||+++-+... +.|+++....+| -.+++.-|=+++ +.+| .+.|.++-|.
T Consensus 203 -~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ 259 (409)
T PRK11790 203 -QSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLA 259 (409)
T ss_pred -hCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCce
Confidence 68888776543 345555555554 467787887774 4444 3677777664
No 113
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=95.26 E-value=0.071 Score=53.10 Aligned_cols=121 Identities=20% Similarity=0.181 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC-----------EEEEEECCCCeeeCCCC-CCHHH
Q 012750 231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGG-----------KVIAVSDITGAVKNADG-IDIHK 298 (457)
Q Consensus 231 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga-----------kVVaVsD~~G~iynp~G-LDi~~ 298 (457)
||-=+..++-.+++..|.+++..||++.|.|..|-+++++|.+.+. +++ +.|++|-+++... ++...
T Consensus 4 TaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~-~vD~~Gll~~~r~~l~~~~ 82 (254)
T cd00762 4 TASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIW-XVDRKGLLVKNRKETCPNE 82 (254)
T ss_pred hHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEE-EECCCCeEeCCCCccCHHH
Confidence 5555666778888888999999999999999999999999987654 455 8999999998663 44322
Q ss_pred HH--HhHhhcCCcccCCCCeecCCCccc-ccccceeecccc-CCccccccccccc----ceEEEecCCCCC
Q 012750 299 LL--AHKDKTGSLKDFDGGDSMEPSELL-AHECDVLIPCAL-GGVLKRENAADVK----AKFIIEAANHPT 361 (457)
Q Consensus 299 L~--~~~~~~g~~~~~~~~~~i~~~ell-~~~~DIliPaA~-~~~It~~na~~i~----akiIvEgAN~p~ 361 (457)
.. ++.+. .....+-.|.+ ..+.||||=++. .+.+|++-++... =.||---+| |+
T Consensus 83 ~~~~~~~~~--------~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSN-Pt 144 (254)
T cd00762 83 YHLARFANP--------ERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSN-PT 144 (254)
T ss_pred HHHHHHcCc--------ccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCC-cC
Confidence 11 11111 01111223344 458999999887 8999998776653 467777777 54
No 114
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=95.24 E-value=0.29 Score=50.85 Aligned_cols=53 Identities=21% Similarity=0.166 Sum_probs=44.7
Q ss_pred CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
..+.|..||...+ ++.+.+++|++++|+| ...||+-++.+|.++++.|. ++.+
T Consensus 193 ~~PCTp~avi~LL----~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVT-icHs 246 (345)
T PLN02897 193 FVSCTPKGCVELL----IRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVS-TVHA 246 (345)
T ss_pred CcCCCHHHHHHHH----HHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEE-EEcC
Confidence 3578999986654 5679999999999999 57799999999999999987 6655
No 115
>PRK12862 malic enzyme; Reviewed
Probab=95.23 E-value=0.12 Score=58.88 Aligned_cols=120 Identities=29% Similarity=0.308 Sum_probs=89.5
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC---EEEEEECCCCeeeCCC--CCCHHHHHHhH
Q 012750 229 AATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGG---KVIAVSDITGAVKNAD--GIDIHKLLAHK 303 (457)
Q Consensus 229 ~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga---kVVaVsD~~G~iynp~--GLDi~~L~~~~ 303 (457)
.-||-=+..++..+++..|++++..||++.|.|.-|-.++++|...|. +|+ +.|++|.++... +++..+. .+.
T Consensus 170 ~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~-~~D~~G~i~~~r~~~l~~~~~-~~a 247 (763)
T PRK12862 170 HGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIW-VTDIKGVVYEGRTELMDPWKA-RYA 247 (763)
T ss_pred ccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEE-EEcCCCeeeCCCCccccHHHH-HHh
Confidence 347777777888889989999999999999999999999999999998 565 899999999865 3543332 122
Q ss_pred hhcCCcccCCCCeecCCCcccccccceeeccccCCccccccccccc-ceEEEecCCCCC
Q 012750 304 DKTGSLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKRENAADVK-AKFIIEAANHPT 361 (457)
Q Consensus 304 ~~~g~~~~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~na~~i~-akiIvEgAN~p~ 361 (457)
+.+ +. -+-.|.+.. +||||=++..+.+|++-+.... =.||---|| |+
T Consensus 248 ~~~----~~-----~~l~e~~~~-~~v~iG~s~~g~~~~~~v~~M~~~piifalsN-P~ 295 (763)
T PRK12862 248 QKT----DA-----RTLAEVIEG-ADVFLGLSAAGVLKPEMVKKMAPRPLIFALAN-PT 295 (763)
T ss_pred hhc----cc-----CCHHHHHcC-CCEEEEcCCCCCCCHHHHHHhccCCEEEeCCC-Cc
Confidence 211 10 122344544 8999999999999998877763 357777777 54
No 116
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.21 E-value=0.058 Score=54.43 Aligned_cols=169 Identities=15% Similarity=0.199 Sum_probs=93.8
Q ss_pred eEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccccc--ccce
Q 012750 254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAH--ECDV 330 (457)
Q Consensus 254 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~--~~DI 330 (457)
+|.++|+|++|+.+++.|.+.|.+|+ +.|.+ .+.+.+..+ .+ .... +++++.+. .+|+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~-v~dr~----------~~~~~~~~~-~g-------~~~~~s~~~~~~~~~~adv 62 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVV-GYDVN----------QEAVDVAGK-LG-------ITARHSLEELVSKLEAPRT 62 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEE-EEECC----------HHHHHHHHH-CC-------CeecCCHHHHHHhCCCCCE
Confidence 68999999999999999999999987 56653 233333322 12 1111 33444432 3788
Q ss_pred eeccccCCcccccc----cccc-cceEEEecCCC-C-CCHHHHHHHHhCCCeEeccccc------ccCC-cee----hhH
Q 012750 331 LIPCALGGVLKREN----AADV-KAKFIIEAANH-P-TDPEADEILSKRGVTILPDIYA------NSGG-VTV----SYF 392 (457)
Q Consensus 331 liPaA~~~~It~~n----a~~i-~akiIvEgAN~-p-~t~~a~~iL~~rGI~viPD~la------NaGG-Vi~----S~~ 392 (457)
++-|-......++- .+.+ +-++|++-++. | .+.+..+.+.++|+.++---+. -.|= +++ ..|
T Consensus 63 Vi~~vp~~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~~~~~gG~~~~~ 142 (299)
T PRK12490 63 IWVMVPAGEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGYCLMVGGDKEIY 142 (299)
T ss_pred EEEEecCchHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCCeEEecCCHHHH
Confidence 88775544222221 2223 23688888776 4 3456667899999987632111 1121 111 122
Q ss_pred HHhhhc----cc----CCC-C-------HHHHHHHHHHHHHHHHHHHHHHHHhcC--CCHHHHHHHH
Q 012750 393 EWVQNI----QG----FMW-E-------EDKVNNELRRYMIRAFHNIKGMCQTHN--CNLRMGAFTL 441 (457)
Q Consensus 393 E~~qn~----~~----~~w-~-------~e~v~~~l~~~m~~~~~~v~~~a~~~~--~~~r~aA~~~ 441 (457)
+.++.+ .. .++ . -+-++..+...+..++.+-+..+++.+ +++.+...++
T Consensus 143 ~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~ 209 (299)
T PRK12490 143 DRLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLW 209 (299)
T ss_pred HHHHHHHHHhcCcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHH
Confidence 333321 11 011 0 122344445555667777788888887 7776665544
No 117
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.16 E-value=0.59 Score=49.65 Aligned_cols=31 Identities=32% Similarity=0.416 Sum_probs=27.9
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
++|+|+|.|.||..+|..|.++|..|++ .|.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~-~D~ 34 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIG-VDI 34 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEE-EeC
Confidence 6899999999999999999999999985 454
No 118
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.09 E-value=0.28 Score=50.00 Aligned_cols=53 Identities=25% Similarity=0.288 Sum_probs=43.5
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHC----CCEEEEEECCC
Q 012750 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHER----GGKVIAVSDIT 285 (457)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~----GakVVaVsD~~ 285 (457)
.++|..|++.. +++++.+++|++|+|+| ...||+-++.+|.++ ++.|. ++.++
T Consensus 137 ~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVt-vchs~ 194 (297)
T PRK14167 137 KPCTPHGIQKL----LAAAGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVT-VCHSR 194 (297)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEE-EeCCC
Confidence 47899888655 55679999999999999 577999999999988 78776 77653
No 119
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=95.03 E-value=0.083 Score=52.84 Aligned_cols=170 Identities=13% Similarity=0.136 Sum_probs=91.3
Q ss_pred eEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccceeec
Q 012750 254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLIP 333 (457)
Q Consensus 254 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DIliP 333 (457)
+|.|+|+|++|+.+++.|.+.|.+|+ +.|.+ .+.+.+..+. +... .-+..+++ .+||+++-
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~-~~dr~----------~~~~~~~~~~-g~~~------~~~~~~~~-~~aDivi~ 61 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLH-VTTIG----------PEVADELLAA-GAVT------AETARQVT-EQADVIFT 61 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEE-EEcCC----------HHHHHHHHHC-CCcc------cCCHHHHH-hcCCEEEE
Confidence 48899999999999999999999987 44542 2333332221 2110 01222333 48999999
Q ss_pred cccCCcccccc-------cccc-cceEEEecCCCCC--CHHHHHHHHhCCCeEeccccc------ccCC--ceeh----h
Q 012750 334 CALGGVLKREN-------AADV-KAKFIIEAANHPT--DPEADEILSKRGVTILPDIYA------NSGG--VTVS----Y 391 (457)
Q Consensus 334 aA~~~~It~~n-------a~~i-~akiIvEgAN~p~--t~~a~~iL~~rGI~viPD~la------NaGG--Vi~S----~ 391 (457)
|.......... ...+ .-++|+...+... +.+..+.+.++|+.++.--+. -.|- ++++ .
T Consensus 62 ~vp~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~ 141 (291)
T TIGR01505 62 MVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAV 141 (291)
T ss_pred ecCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHH
Confidence 86543221111 1222 3468887665542 234556788999876643221 1111 1111 1
Q ss_pred HHHhhhc----cc-CC-C---CHH----HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 012750 392 FEWVQNI----QG-FM-W---EED----KVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLG 442 (457)
Q Consensus 392 ~E~~qn~----~~-~~-w---~~e----~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A 442 (457)
++.+..+ .. .. . ... -++..+.......+.+.+..+++.|+++.+....+.
T Consensus 142 ~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~ 205 (291)
T TIGR01505 142 FDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALR 205 (291)
T ss_pred HHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 1222111 10 00 0 111 122333333445577888889999999888776554
No 120
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.00 E-value=0.42 Score=48.51 Aligned_cols=53 Identities=19% Similarity=0.168 Sum_probs=43.8
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHC----CCEEEEEECCC
Q 012750 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHER----GGKVIAVSDIT 285 (457)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~----GakVVaVsD~~ 285 (457)
.+.|..||+.. ++++|.+++|++|+|+| ...||+-++.+|.++ ++.|+ ++.++
T Consensus 133 ~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVt-vchs~ 190 (287)
T PRK14181 133 IPCTPAGIIEL----LKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVT-LLHSQ 190 (287)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEE-EeCCC
Confidence 46899988665 55669999999999999 577999999999998 78777 77653
No 121
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.96 E-value=0.36 Score=48.91 Aligned_cols=53 Identities=19% Similarity=0.167 Sum_probs=44.3
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHH--CCCEEEEEECCC
Q 012750 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHE--RGGKVIAVSDIT 285 (457)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~--~GakVVaVsD~~ 285 (457)
.++|..|++..+ +++|.+++|++++|+| ...||+-++.+|.+ +++.|. ++.++
T Consensus 138 ~PcTp~av~~ll----~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVt-vchs~ 193 (284)
T PRK14193 138 LPCTPRGIVHLL----RRYDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVT-LCHTG 193 (284)
T ss_pred CCCCHHHHHHHH----HHhCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEE-EeCCC
Confidence 478999986654 5679999999999999 57899999999998 788886 77663
No 122
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=94.88 E-value=0.086 Score=49.02 Aligned_cols=54 Identities=19% Similarity=0.174 Sum_probs=39.6
Q ss_pred CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecC-hHHHHHHHHHHHCCCEEEEEECCC
Q 012750 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFG-NVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
.-+.|..|++..+ ++.+.+++|++++|+|-+ .||+-++.+|.++|+.|. +++++
T Consensus 15 ~~PcTp~aii~lL----~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt-~~h~~ 69 (160)
T PF02882_consen 15 FVPCTPLAIIELL----EYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVT-ICHSK 69 (160)
T ss_dssp S--HHHHHHHHHH----HHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEE-EE-TT
T ss_pred CcCCCHHHHHHHH----HhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEE-eccCC
Confidence 3568988886654 557899999999999976 599999999999999998 67764
No 123
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.87 E-value=0.37 Score=48.49 Aligned_cols=130 Identities=18% Similarity=0.158 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHHHHHhCC--CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCC
Q 012750 231 TGRGVVYATEALLAEHGQ--AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGS 308 (457)
Q Consensus 231 Tg~Gv~~~~~~~l~~~g~--~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~ 308 (457)
-+.|...+++ +.+. ++++++++|.|.|.+|+.++..|.+.|++-|.|.+++ .+...++.++-+.
T Consensus 106 D~~G~~~~l~----~~~~~~~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt----------~~ka~~La~~~~~ 171 (282)
T TIGR01809 106 DWDGIAGALA----NIGKFEPLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN----------PDKLSRLVDLGVQ 171 (282)
T ss_pred CHHHHHHHHH----hhCCccccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC----------HHHHHHHHHHhhh
Confidence 4567777765 3452 5789999999999999999999999998655577763 2333333332111
Q ss_pred cccCCCCeecCC-Cccc--ccccceeeccccCC-cccccccc---------cc-cceEEEecCCCCC-CHHHHHHHHhCC
Q 012750 309 LKDFDGGDSMEP-SELL--AHECDVLIPCALGG-VLKRENAA---------DV-KAKFIIEAANHPT-DPEADEILSKRG 373 (457)
Q Consensus 309 ~~~~~~~~~i~~-~ell--~~~~DIliPaA~~~-~It~~na~---------~i-~akiIvEgAN~p~-t~~a~~iL~~rG 373 (457)
. .....++. +++. -.++|++|-|+.-+ .++.+... ++ +..++.+...+|. || --+.-+++|
T Consensus 172 ~---~~~~~~~~~~~~~~~~~~~DiVInaTp~g~~~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P~~T~-ll~~A~~~G 247 (282)
T TIGR01809 172 V---GVITRLEGDSGGLAIEKAAEVLVSTVPADVPADYVDLFATVPFLLLKRKSSEGIFLDAAYDPWPTP-LVAIVSAAG 247 (282)
T ss_pred c---CcceeccchhhhhhcccCCCEEEECCCCCCCCCHHHhhhhhhhhccccCCCCcEEEEEeeCCCCCH-HHHHHHHCC
Confidence 0 00111111 2221 14789999987543 33333221 11 2457788887774 44 334445566
Q ss_pred CeEec
Q 012750 374 VTILP 378 (457)
Q Consensus 374 I~viP 378 (457)
..++.
T Consensus 248 ~~~~~ 252 (282)
T TIGR01809 248 WRVIS 252 (282)
T ss_pred CEEEC
Confidence 65543
No 124
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.87 E-value=0.37 Score=48.90 Aligned_cols=53 Identities=23% Similarity=0.195 Sum_probs=43.8
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHH----CCCEEEEEECCC
Q 012750 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHE----RGGKVIAVSDIT 285 (457)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~----~GakVVaVsD~~ 285 (457)
.++|..|++.. +++++.+++|++++|+| ...||+-++.+|.+ +++.|. +++++
T Consensus 137 ~PcTp~av~~l----L~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt-~~hs~ 194 (286)
T PRK14184 137 RPCTPAGVMTL----LERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVT-VCHSR 194 (286)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEE-EEeCC
Confidence 47899888654 55679999999999999 57799999999998 788887 66653
No 125
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=94.86 E-value=0.091 Score=54.13 Aligned_cols=116 Identities=23% Similarity=0.261 Sum_probs=74.7
Q ss_pred hCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccc
Q 012750 246 HGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA 325 (457)
Q Consensus 246 ~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~ 325 (457)
+|.++.|+|+.|.|+|.+|+.+|+.+.--|.+|+ ..|. ... .+...+ . +.+.++.++++.
T Consensus 140 ~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~-y~~~-------~~~-~~~~~~-----~------~~~y~~l~ell~ 199 (324)
T COG1052 140 LGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVL-YYDR-------SPN-PEAEKE-----L------GARYVDLDELLA 199 (324)
T ss_pred cccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEE-EECC-------CCC-hHHHhh-----c------CceeccHHHHHH
Confidence 4567999999999999999999999998889998 3443 332 111110 0 123344455554
Q ss_pred cccceeeccccC-----Ccccccccccccc-eEEEecCCCCC-CH-HHHHHHHhCCCe-Eeccccc
Q 012750 326 HECDVLIPCALG-----GVLKRENAADVKA-KFIIEAANHPT-DP-EADEILSKRGVT-ILPDIYA 382 (457)
Q Consensus 326 ~~~DIliPaA~~-----~~It~~na~~i~a-kiIvEgAN~p~-t~-~a~~iL~~rGI~-viPD~la 382 (457)
.+||++-.... +.||.+-..++|- -+++.-|=+++ .. +..+.|++.-|. ..=|+.-
T Consensus 200 -~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e 264 (324)
T COG1052 200 -ESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFE 264 (324)
T ss_pred -hCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecC
Confidence 78988766533 3555555555543 68888888885 43 335788887775 3334333
No 126
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=94.85 E-value=0.25 Score=51.04 Aligned_cols=31 Identities=32% Similarity=0.623 Sum_probs=27.5
Q ss_pred eEEEEecChHHHHHHHHHHHCC----CEEEEEECC
Q 012750 254 TFVIQGFGNVGSWAARLIHERG----GKVIAVSDI 284 (457)
Q Consensus 254 ~vaIqGfGnVG~~~a~~L~~~G----akVVaVsD~ 284 (457)
+|+|.|||.+|+.+++.|.+.+ ..|++|.|.
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~ 35 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNEL 35 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecC
Confidence 5899999999999999998764 899999885
No 127
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=94.84 E-value=0.066 Score=53.40 Aligned_cols=124 Identities=26% Similarity=0.259 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHC----CC------EEEEEECCCCeeeCCCCCCHHHHH
Q 012750 231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHER----GG------KVIAVSDITGAVKNADGIDIHKLL 300 (457)
Q Consensus 231 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~----Ga------kVVaVsD~~G~iynp~GLDi~~L~ 300 (457)
||-=+..++-.+++..|.+|+..||++.|.|..|-.++++|.+. |. +=+-+.|++|-+++.. -|+..-.
T Consensus 4 TaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r-~~l~~~~ 82 (255)
T PF03949_consen 4 TAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDR-EDLNPHK 82 (255)
T ss_dssp HHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTT-SSHSHHH
T ss_pred hHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccC-ccCChhh
Confidence 44455667778888889999999999999999999999999876 87 3344899999999865 3333332
Q ss_pred HhHhh-cCCcccCCCCeecCCCccc-ccccceeeccc-cCCccccccccccc----ceEEEecCCCCC
Q 012750 301 AHKDK-TGSLKDFDGGDSMEPSELL-AHECDVLIPCA-LGGVLKRENAADVK----AKFIIEAANHPT 361 (457)
Q Consensus 301 ~~~~~-~g~~~~~~~~~~i~~~ell-~~~~DIliPaA-~~~~It~~na~~i~----akiIvEgAN~p~ 361 (457)
+.+.+ ..... ...+-.|.+ ..+.||||=++ .++.+|++-++... -.||---+| |+
T Consensus 83 ~~~a~~~~~~~-----~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSN-Pt 144 (255)
T PF03949_consen 83 KPFARKTNPEK-----DWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSN-PT 144 (255)
T ss_dssp HHHHBSSSTTT-------SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SS-SC
T ss_pred hhhhccCcccc-----cccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCC-CC
Confidence 22221 11111 011222333 45779999999 78999999887764 468888888 54
No 128
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=94.79 E-value=0.15 Score=52.42 Aligned_cols=32 Identities=38% Similarity=0.687 Sum_probs=29.2
Q ss_pred CeEEEEecChHHHHHHHHHHHCC--CEEEEEECC
Q 012750 253 LTFVIQGFGNVGSWAARLIHERG--GKVIAVSDI 284 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~G--akVVaVsD~ 284 (457)
.||+|=|||-+|+.+++.+.+.+ .+||||.|.
T Consensus 2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~ 35 (335)
T COG0057 2 IKVAINGFGRIGRLVARAALERDGDIEVVAINDL 35 (335)
T ss_pred cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 58999999999999999998875 899999985
No 129
>PRK06349 homoserine dehydrogenase; Provisional
Probab=94.76 E-value=0.055 Score=57.63 Aligned_cols=159 Identities=19% Similarity=0.232 Sum_probs=81.3
Q ss_pred CCeEEEEecChHHHHHHHHHHHC----------CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CC
Q 012750 252 DLTFVIQGFGNVGSWAARLIHER----------GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EP 320 (457)
Q Consensus 252 g~~vaIqGfGnVG~~~a~~L~~~----------GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~ 320 (457)
..+|+|.|+|+||+.+++.|.++ +.+|++|+|++..-. .+++ +++.... +.
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~--~~~~----------------~~~~~~~~d~ 64 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKD--RGVD----------------LPGILLTTDP 64 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhc--cCCC----------------CcccceeCCH
Confidence 46899999999999999988653 468999999863211 1111 1111111 33
Q ss_pred Ccccc-cccceeeccccCCccccccc-ccccc--eEEEecCCCCC-CHHH---HHHHHhCCCeEecccccccCCc-eehh
Q 012750 321 SELLA-HECDVLIPCALGGVLKRENA-ADVKA--KFIIEAANHPT-DPEA---DEILSKRGVTILPDIYANSGGV-TVSY 391 (457)
Q Consensus 321 ~ell~-~~~DIliPaA~~~~It~~na-~~i~a--kiIvEgAN~p~-t~~a---~~iL~~rGI~viPD~laNaGGV-i~S~ 391 (457)
++++. .+.|+++.|..+.....+-+ .-+++ -+|++ |-+. ...+ .+.-+++|+.+.=. .+-+||+ +...
T Consensus 65 ~~ll~d~~iDvVve~tg~~~~~~~~~~~aL~~GkhVVta--NK~~~a~~~~eL~~lA~~~gv~l~fE-asV~ggiPii~~ 141 (426)
T PRK06349 65 EELVNDPDIDIVVELMGGIEPARELILKALEAGKHVVTA--NKALLAVHGAELFAAAEEKGVDLYFE-AAVAGGIPIIKA 141 (426)
T ss_pred HHHhhCCCCCEEEECCCCchHHHHHHHHHHHCCCeEEEc--CHHHHHHHHHHHHHHHHHcCCcEEEE-EEeeccCchHHH
Confidence 56664 57999999964432222222 12333 34443 4332 2222 34556788865421 1122332 1111
Q ss_pred H-HHhhh-----ccc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012750 392 F-EWVQN-----IQG-FMWEEDKVNNELRRYMIRAFHNIKGMCQTHNC 432 (457)
Q Consensus 392 ~-E~~qn-----~~~-~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~ 432 (457)
+ +.+.. +++ +.=+-.-+..++.+. ...|.+++..|++.|.
T Consensus 142 l~~~l~~~~I~~I~GIlnGT~nyIl~~m~~~-g~~f~~al~~Aq~~Gy 188 (426)
T PRK06349 142 LREGLAANRITRVMGIVNGTTNYILTKMTEE-GLSFEDALKEAQRLGY 188 (426)
T ss_pred HHhhcccCCeeEEEEEEeCcHHHHHhhhhhc-CCCHHHHHHHHHHcCC
Confidence 1 11110 000 000122344444321 4479999999998875
No 130
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=94.63 E-value=0.48 Score=51.98 Aligned_cols=132 Identities=18% Similarity=0.240 Sum_probs=77.9
Q ss_pred chHHHHHHHHHHHHHH------hCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhH
Q 012750 230 ATGRGVVYATEALLAE------HGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHK 303 (457)
Q Consensus 230 aTg~Gv~~~~~~~l~~------~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~ 303 (457)
--+.|+..+++..+.. .+.+++++++.|.|.|.+|+.++..|.+.|++|+ +.+.+ .+...+..
T Consensus 351 TD~~G~~~~l~~~~~~~~~~~~~~~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~-i~nR~----------~e~a~~la 419 (529)
T PLN02520 351 TDYIGAISAIEDGLRASGSSPASGSPLAGKLFVVIGAGGAGKALAYGAKEKGARVV-IANRT----------YERAKELA 419 (529)
T ss_pred ccHHHHHHHHHhhhcccccccccccCCCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEcCC----------HHHHHHHH
Confidence 3467888888764422 2456899999999999999999999999999877 66653 33443333
Q ss_pred hhcC-CcccCCCCeecCCCcccccccceeeccccCCcccccc-----cccc-cceEEEecCCCCC-CHHHHHHHHhCCCe
Q 012750 304 DKTG-SLKDFDGGDSMEPSELLAHECDVLIPCALGGVLKREN-----AADV-KAKFIIEAANHPT-DPEADEILSKRGVT 375 (457)
Q Consensus 304 ~~~g-~~~~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~n-----a~~i-~akiIvEgAN~p~-t~~a~~iL~~rGI~ 375 (457)
++-+ ....+. +..+.+..++||+|-|+.-+.-...+ ...+ ...+|.+-.-+|. ||= -+.-+++|..
T Consensus 420 ~~l~~~~~~~~-----~~~~~~~~~~diiINtT~vGm~~~~~~~pl~~~~l~~~~~v~D~vY~P~~T~l-l~~A~~~G~~ 493 (529)
T PLN02520 420 DAVGGQALTLA-----DLENFHPEEGMILANTTSVGMQPNVDETPISKHALKHYSLVFDAVYTPKITRL-LREAEESGAI 493 (529)
T ss_pred HHhCCceeeHh-----HhhhhccccCeEEEecccCCCCCCCCCCcccHhhCCCCCEEEEeccCCCcCHH-HHHHHHCCCe
Confidence 3211 111110 01122334689999777544321111 1112 3467888888884 443 3344556655
Q ss_pred Eec
Q 012750 376 ILP 378 (457)
Q Consensus 376 viP 378 (457)
++.
T Consensus 494 ~~~ 496 (529)
T PLN02520 494 IVS 496 (529)
T ss_pred EeC
Confidence 543
No 131
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.58 E-value=0.1 Score=56.94 Aligned_cols=35 Identities=20% Similarity=0.151 Sum_probs=30.8
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
..+.+|+|.|.|.+|..++..+...|++|+ +.|.+
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~-a~D~~ 197 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVR-AFDTR 197 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 568999999999999999999999999866 66763
No 132
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.54 E-value=0.56 Score=47.77 Aligned_cols=54 Identities=22% Similarity=0.183 Sum_probs=44.0
Q ss_pred CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHC----CCEEEEEECCC
Q 012750 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHER----GGKVIAVSDIT 285 (457)
Q Consensus 227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~----GakVVaVsD~~ 285 (457)
-.++|..||... +++++.+++|++|+|+| ...||+-++.+|.++ ++.|+ ++.++
T Consensus 136 ~~PcTp~av~~l----L~~~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVt-vchs~ 194 (293)
T PRK14185 136 FVSATPNGILEL----LKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVT-VCHSR 194 (293)
T ss_pred CCCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEE-EecCC
Confidence 357899888655 55678999999999999 577999999999988 57776 77664
No 133
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=94.47 E-value=0.14 Score=49.07 Aligned_cols=62 Identities=26% Similarity=0.183 Sum_probs=49.1
Q ss_pred CcchHHHHHHHHHHHH-----HHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCCCeeeC
Q 012750 228 EAATGRGVVYATEALL-----AEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDITGAVKN 290 (457)
Q Consensus 228 ~~aTg~Gv~~~~~~~l-----~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~iyn 290 (457)
.+.|.+||+..++..= +..|.+++|++++|+| ...||+-++.+|.++|+.|. ++|++|..+-
T Consensus 33 ~PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVt-i~~~~~~~~~ 100 (197)
T cd01079 33 LPCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARVY-SVDINGIQVF 100 (197)
T ss_pred cCCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EEecCccccc
Confidence 4789999977766430 0124589999999999 56799999999999999998 9999886553
No 134
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=94.47 E-value=0.58 Score=49.33 Aligned_cols=120 Identities=17% Similarity=0.247 Sum_probs=67.5
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCccc-----C---CCCee-cC--CC
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKD-----F---DGGDS-ME--PS 321 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~-----~---~~~~~-i~--~~ 321 (457)
++|+|+|.|.||..+|..|. .|..|+ +.|.+ .+.+.+..+..-.+.+ + ..... .+ ..
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~~Vi-gvD~d----------~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~ 68 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNHEVV-ALDIL----------PSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKN 68 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCcEE-EEECC----------HHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchh
Confidence 37999999999999997776 499988 45653 2222222211000000 0 00111 11 11
Q ss_pred cccccccceeeccccCCccccc-------cc-------ccc--cceEEEecCCCC-CCHHHHHHHHhCCCeEeccccccc
Q 012750 322 ELLAHECDVLIPCALGGVLKRE-------NA-------ADV--KAKFIIEAANHP-TDPEADEILSKRGVTILPDIYANS 384 (457)
Q Consensus 322 ell~~~~DIliPaA~~~~It~~-------na-------~~i--~akiIvEgAN~p-~t~~a~~iL~~rGI~viPD~laNa 384 (457)
+. -.+||+++.|-.+. ++.+ .+ .++ ..-+|.+..=.| +|.+..+.+.++|+.+.|.++...
T Consensus 69 ~~-~~~ad~vii~Vpt~-~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~~PE~l~~G 146 (388)
T PRK15057 69 EA-YRDADYVIIATPTD-YDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTENIIFSPEFLREG 146 (388)
T ss_pred hh-hcCCCEEEEeCCCC-CccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhcCcEEECcccccCC
Confidence 22 25899999986654 2221 11 111 234445655555 566777788889999999988655
Q ss_pred CC
Q 012750 385 GG 386 (457)
Q Consensus 385 GG 386 (457)
=-
T Consensus 147 ~a 148 (388)
T PRK15057 147 KA 148 (388)
T ss_pred cc
Confidence 33
No 135
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=94.45 E-value=0.16 Score=50.74 Aligned_cols=106 Identities=16% Similarity=0.277 Sum_probs=64.0
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccccccccee
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECDVL 331 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~DIl 331 (457)
++|.|+|+|.+|+.+|+.|.+.|.+|+ +.|.+ .+.+.+..+. + .... +.++++ .+||++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~-~~d~~----------~~~~~~~~~~-g-------~~~~~~~~e~~-~~~d~v 62 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLV-VYDRN----------PEAVAEVIAA-G-------AETASTAKAVA-EQCDVI 62 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEE-EEcCC----------HHHHHHHHHC-C-------CeecCCHHHHH-hcCCEE
Confidence 579999999999999999999999886 44542 2233222221 1 1111 223444 479999
Q ss_pred eccccCCccccc-------ccccc-cceEEEecCCCCC--CHHHHHHHHhCCCeEec
Q 012750 332 IPCALGGVLKRE-------NAADV-KAKFIIEAANHPT--DPEADEILSKRGVTILP 378 (457)
Q Consensus 332 iPaA~~~~It~~-------na~~i-~akiIvEgAN~p~--t~~a~~iL~~rGI~viP 378 (457)
+-|.....-... -.+.+ +-++|+.-.+... +.+..+.+.++|+.++.
T Consensus 63 i~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d 119 (296)
T PRK11559 63 ITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLD 119 (296)
T ss_pred EEeCCCHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 998764321111 12233 3478887666542 23455678888987643
No 136
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=94.40 E-value=0.43 Score=49.50 Aligned_cols=32 Identities=28% Similarity=0.558 Sum_probs=27.7
Q ss_pred CeEEEEecChHHHHHHHHHHHC----CCEEEEEECC
Q 012750 253 LTFVIQGFGNVGSWAARLIHER----GGKVIAVSDI 284 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~----GakVVaVsD~ 284 (457)
.+|+|.|||.+|+.+.+.|.+. ..+|++|-|.
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~ 37 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINEL 37 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCC
Confidence 4799999999999999999874 5789988764
No 137
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=94.23 E-value=0.13 Score=48.63 Aligned_cols=121 Identities=25% Similarity=0.387 Sum_probs=56.9
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCC---------ee-eCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCc
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG---------AV-KNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSE 322 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G---------~i-ynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~e 322 (457)
++|+|.|.|-||..+|-.|+++|.+|+++ |.+- .. +.+.| ++++++...+.+.+.- .++.+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~-D~~~~~v~~l~~g~~p~~E~~--l~~ll~~~~~~~~l~~------t~~~~ 71 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGV-DIDEEKVEALNNGELPIYEPG--LDELLKENVSAGRLRA------TTDIE 71 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE--S-HHHHHHHHTTSSSS-CTT--HHHHHHHHHHTTSEEE------ESEHH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEE-eCChHHHHHHhhccccccccc--hhhhhccccccccchh------hhhhh
Confidence 58999999999999999999999999964 5532 11 11222 3344433332233211 11111
Q ss_pred ccccccceeeccccCCccccccc----------ccc------cceEEEecCCCC-CCH-HHHHHHHhCC-------CeEe
Q 012750 323 LLAHECDVLIPCALGGVLKRENA----------ADV------KAKFIIEAANHP-TDP-EADEILSKRG-------VTIL 377 (457)
Q Consensus 323 ll~~~~DIliPaA~~~~It~~na----------~~i------~akiIvEgAN~p-~t~-~a~~iL~~rG-------I~vi 377 (457)
-.-.+||+++=|-... .++++. +.+ .+-+|.|..=.| +|. ....+|++.+ +.+.
T Consensus 72 ~ai~~adv~~I~VpTP-~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~ 150 (185)
T PF03721_consen 72 EAIKDADVVFICVPTP-SDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYS 150 (185)
T ss_dssp HHHHH-SEEEE----E-BETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE-
T ss_pred hhhhccceEEEecCCC-ccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEEC
Confidence 1123788888775322 222221 111 344566655545 444 3557888766 6789
Q ss_pred cccccc
Q 012750 378 PDIYAN 383 (457)
Q Consensus 378 PD~laN 383 (457)
|+++.-
T Consensus 151 PErl~~ 156 (185)
T PF03721_consen 151 PERLRE 156 (185)
T ss_dssp -----T
T ss_pred CCccCC
Confidence 998873
No 138
>PRK08328 hypothetical protein; Provisional
Probab=94.22 E-value=0.039 Score=53.90 Aligned_cols=119 Identities=18% Similarity=0.224 Sum_probs=65.3
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhh-cCCcccCCCCeecCCCccccccc
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDK-TGSLKDFDGGDSMEPSELLAHEC 328 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~-~g~~~~~~~~~~i~~~ell~~~~ 328 (457)
+++.+|+|.|.|-+|+.+++.|...|..=+.+.|.+ =++...|-+..-- ...+-..+..+ .....+.....
T Consensus 25 L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D-------~ve~sNL~Rq~l~~~~dvG~~~k~~-~a~~~l~~~np 96 (231)
T PRK08328 25 LKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ-------TPELSNLNRQILHWEEDLGKNPKPL-SAKWKLERFNS 96 (231)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC-------ccChhhhccccccChhhcCchHHHH-HHHHHHHHhCC
Confidence 677899999999999999999999998655566653 2333333221000 00000000000 00011223344
Q ss_pred ceeeccccCCcccccccccc--cceEEEecCCCCCCHH-HHHHHHhCCCeEe
Q 012750 329 DVLIPCALGGVLKRENAADV--KAKFIIEAANHPTDPE-ADEILSKRGVTIL 377 (457)
Q Consensus 329 DIliPaA~~~~It~~na~~i--~akiIvEgAN~p~t~~-a~~iL~~rGI~vi 377 (457)
|+-|.+ ....++++|++.+ ++.+|+.+.-++.+.. ..+...+.||.++
T Consensus 97 ~v~v~~-~~~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i 147 (231)
T PRK08328 97 DIKIET-FVGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLV 147 (231)
T ss_pred CCEEEE-EeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 555555 2234566776553 6778888765553332 2346678887765
No 139
>PRK08223 hypothetical protein; Validated
Probab=94.09 E-value=0.13 Score=52.27 Aligned_cols=36 Identities=22% Similarity=0.382 Sum_probs=31.9
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
|+..+|+|+|.|-+|+.+++.|...|..=+.+.|.+
T Consensus 25 L~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 688999999999999999999999998666677764
No 140
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.09 E-value=0.68 Score=47.28 Aligned_cols=53 Identities=19% Similarity=0.246 Sum_probs=43.4
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHC----CCEEEEEECCC
Q 012750 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHER----GGKVIAVSDIT 285 (457)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~----GakVVaVsD~~ 285 (457)
.++|..||... ++++|.+++|++|+|+| ...||+-++.+|.++ ++.|. ++.++
T Consensus 141 ~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVt-v~hs~ 198 (297)
T PRK14168 141 LPCTPAGIQEM----LVRSGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVT-IVHTR 198 (297)
T ss_pred cCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEE-EecCC
Confidence 47898888655 45679999999999999 578999999999988 67776 66553
No 141
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=94.07 E-value=0.14 Score=49.59 Aligned_cols=89 Identities=25% Similarity=0.273 Sum_probs=56.6
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccc--ccccce
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL--AHECDV 330 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell--~~~~DI 330 (457)
++++|.|.||+|+.+++.|...|..|+ |+.+++ ++++....+..+. . ++..+.. ...|||
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~-igs~r~---------~~~~~a~a~~l~~-----~---i~~~~~~dA~~~aDV 63 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVI-IGSSRG---------PKALAAAAAALGP-----L---ITGGSNEDAAALADV 63 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEE-EecCCC---------hhHHHHHHHhhcc-----c---cccCChHHHHhcCCE
Confidence 578999999999999999999999998 776654 3344433332211 1 2222222 225899
Q ss_pred eeccccCCccc---ccccccccceEEEecCCC
Q 012750 331 LIPCALGGVLK---RENAADVKAKFIIEAANH 359 (457)
Q Consensus 331 liPaA~~~~It---~~na~~i~akiIvEgAN~ 359 (457)
++.+-.-..+. .+-.+.++-|+|+...|.
T Consensus 64 VvLAVP~~a~~~v~~~l~~~~~~KIvID~tnp 95 (211)
T COG2085 64 VVLAVPFEAIPDVLAELRDALGGKIVIDATNP 95 (211)
T ss_pred EEEeccHHHHHhHHHHHHHHhCCeEEEecCCC
Confidence 98875433222 222233556999999884
No 142
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.04 E-value=0.061 Score=45.80 Aligned_cols=37 Identities=30% Similarity=0.408 Sum_probs=30.7
Q ss_pred CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750 248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
++++|++|.|+|.|+||..-++.|.+.|++|+-++..
T Consensus 3 l~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 3 LDLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp E--TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 4689999999999999999999999999999866654
No 143
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=94.03 E-value=1.2 Score=45.27 Aligned_cols=131 Identities=21% Similarity=0.228 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC-EEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcc
Q 012750 232 GRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGG-KVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLK 310 (457)
Q Consensus 232 g~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~ 310 (457)
|.|+..++++. ..+.+.+|++++|.|-|-.++.++..|.+.|+ +|+ |.+++ .+...++.+..+...
T Consensus 108 ~~G~~~~L~~~--~~~~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~-V~NRt----------~~ra~~La~~~~~~~ 174 (283)
T COG0169 108 GIGFLRALKEF--GLPVDVTGKRVLILGAGGAARAVAFALAEAGAKRIT-VVNRT----------RERAEELADLFGELG 174 (283)
T ss_pred HHHHHHHHHhc--CCCcccCCCEEEEECCcHHHHHHHHHHHHcCCCEEE-EEeCC----------HHHHHHHHHHhhhcc
Confidence 55665554432 11255789999999999999999999999997 455 77764 333333333211110
Q ss_pred cCCCCeecCCCcccccccceeeccccCCccccc-----ccccc-cceEEEecCCCCC-CHHHHHHHHhCCCeEe
Q 012750 311 DFDGGDSMEPSELLAHECDVLIPCALGGVLKRE-----NAADV-KAKFIIEAANHPT-DPEADEILSKRGVTIL 377 (457)
Q Consensus 311 ~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~-----na~~i-~akiIvEgAN~p~-t~~a~~iL~~rGI~vi 377 (457)
.+.........+... ++|++|-|+.-+.-..+ +...+ +..++.+---+|. ||= -+.-+++|..++
T Consensus 175 ~~~~~~~~~~~~~~~-~~dliINaTp~Gm~~~~~~~~~~~~~l~~~~~v~D~vY~P~~Tpl-L~~A~~~G~~~i 246 (283)
T COG0169 175 AAVEAAALADLEGLE-EADLLINATPVGMAGPEGDSPVPAELLPKGAIVYDVVYNPLETPL-LREARAQGAKTI 246 (283)
T ss_pred ccccccccccccccc-ccCEEEECCCCCCCCCCCCCCCcHHhcCcCCEEEEeccCCCCCHH-HHHHHHcCCeEE
Confidence 000011111111122 69999999865543332 12223 6678889999985 553 455667776643
No 144
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.01 E-value=0.53 Score=46.24 Aligned_cols=170 Identities=14% Similarity=0.109 Sum_probs=85.1
Q ss_pred eEEEEecChHHHHHHHHHHHCCCEE--EEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccccccce
Q 012750 254 TFVIQGFGNVGSWAARLIHERGGKV--IAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECDV 330 (457)
Q Consensus 254 ~vaIqGfGnVG~~~a~~L~~~GakV--VaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~DI 330 (457)
+|.|+|+|++|+.+++.|.+.|..+ +.++|. + .+.+.++.+.. ++.+.. ++.++. .+|||
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r-------~---~~~~~~l~~~~------~~~~~~~~~~~~~-~~aDv 64 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPR-------N---AQIAARLAERF------PKVRIAKDNQAVV-DRSDV 64 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECC-------C---HHHHHHHHHHc------CCceEeCCHHHHH-HhCCE
Confidence 7999999999999999998887533 334443 2 34444433321 122222 233443 36899
Q ss_pred eeccccCCccccccccc--c-cceEEEecCCCCCCHHH-HHHHHh--CCCeEeccccc-ccCCcee--hhHHHhhhc---
Q 012750 331 LIPCALGGVLKRENAAD--V-KAKFIIEAANHPTDPEA-DEILSK--RGVTILPDIYA-NSGGVTV--SYFEWVQNI--- 398 (457)
Q Consensus 331 liPaA~~~~It~~na~~--i-~akiIvEgAN~p~t~~a-~~iL~~--rGI~viPD~la-NaGGVi~--S~~E~~qn~--- 398 (457)
++-|.....+. +-+.. + +-++|+.-+ .+++.+. .+.+.. +-+.++|-.-. ...|++. ...++++.+
T Consensus 65 Vilav~p~~~~-~vl~~l~~~~~~~vis~~-ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~~~~~~~~l~~~ 142 (258)
T PRK06476 65 VFLAVRPQIAE-EVLRALRFRPGQTVISVI-AATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYPPDPFVAALFDA 142 (258)
T ss_pred EEEEeCHHHHH-HHHHHhccCCCCEEEEEC-CCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecCCHHHHHHHHHh
Confidence 99887643321 11111 1 235666544 4555443 334432 23345564222 2334433 222343332
Q ss_pred -ccCCC--CHHHHHHH-----HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 012750 399 -QGFMW--EEDKVNNE-----LRRYMIRAFHNIKGMCQTHNCNLRMGAFTLG 442 (457)
Q Consensus 399 -~~~~w--~~e~v~~~-----l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A 442 (457)
-...| +++..+.- .-..+...+....+.+.+.|++..+|..++.
T Consensus 143 lG~~~~~~~e~~~d~~~a~~s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~ 194 (258)
T PRK06476 143 LGTAVECDSEEEYDLLAAASALMATYFGILETATGWLEEQGLKRQKARAYLA 194 (258)
T ss_pred cCCcEEECChHhccceeehhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 11222 22222211 1122333555666677788888887765554
No 145
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=93.99 E-value=0.15 Score=53.86 Aligned_cols=125 Identities=20% Similarity=0.254 Sum_probs=75.3
Q ss_pred CeEEEEecChHHHHHHHHHHHCC-CEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCC-cccCCCCeecCC------Cccc
Q 012750 253 LTFVIQGFGNVGSWAARLIHERG-GKVIAVSDITGAVKNADGIDIHKLLAHKDKTGS-LKDFDGGDSMEP------SELL 324 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~G-akVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~-~~~~~~~~~i~~------~ell 324 (457)
++|+|.|.|+||+.+|..|++.| .+|. |+|.+ .+.+.+.....+. + .+..++- .+++
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~-iAdRs----------~~~~~~i~~~~~~~v----~~~~vD~~d~~al~~li 66 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVT-IADRS----------KEKCARIAELIGGKV----EALQVDAADVDALVALI 66 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEE-EEeCC----------HHHHHHHHhhccccc----eeEEecccChHHHHHHH
Confidence 57999999999999999999999 7877 77774 3455554443211 1 0111221 1234
Q ss_pred ccccceeeccccCCccccccccc-ccce-EEEecCCCCC-CHHHHHHHHhCCCeEecccccccCCceehhHHHh
Q 012750 325 AHECDVLIPCALGGVLKRENAAD-VKAK-FIIEAANHPT-DPEADEILSKRGVTILPDIYANSGGVTVSYFEWV 395 (457)
Q Consensus 325 ~~~~DIliPaA~~~~It~~na~~-i~ak-iIvEgAN~p~-t~~a~~iL~~rGI~viPD~laNaGGVi~S~~E~~ 395 (457)
+ +.|+.|-|+...+ +..-++. ++++ -++.-+|..- .-+-++...+.||.++|+. --+-|++..+....
T Consensus 67 ~-~~d~VIn~~p~~~-~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~~Agit~v~~~-G~dPGi~nv~a~~a 137 (389)
T COG1748 67 K-DFDLVINAAPPFV-DLTILKACIKTGVDYVDTSYYEEPPWKLDEEAKKAGITAVLGC-GFDPGITNVLAAYA 137 (389)
T ss_pred h-cCCEEEEeCCchh-hHHHHHHHHHhCCCEEEcccCCchhhhhhHHHHHcCeEEEccc-CcCcchHHHHHHHH
Confidence 3 4499999987542 2211111 2222 2345555543 3455678999999999986 34456766655543
No 146
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.95 E-value=0.44 Score=50.33 Aligned_cols=118 Identities=31% Similarity=0.430 Sum_probs=72.4
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECCC---------CeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcc
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT---------GAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSEL 323 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~---------G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~el 323 (457)
.+++|+|.|-||.-+|-.++++|++|+|+ |.+ |..|=.+ .+.+++++-..+.|.+.. .+.-+-
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~-DIn~~~Vd~ln~G~~~i~e-~~~~~~v~~~v~~g~lra------Ttd~~~ 81 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGV-DINQKKVDKLNRGESYIEE-PDLDEVVKEAVESGKLRA------TTDPEE 81 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeE-eCCHHHHHHHhCCcceeec-CcHHHHHHHHHhcCCceE------ecChhh
Confidence 89999999999999999999999999985 543 3333221 234554433333344321 122333
Q ss_pred cccccceeeccccCCccccc---------cccc-c------cceEEEecCCCC-CCHHHHH-HHHhCCCeEec-cc
Q 012750 324 LAHECDVLIPCALGGVLKRE---------NAAD-V------KAKFIIEAANHP-TDPEADE-ILSKRGVTILP-DI 380 (457)
Q Consensus 324 l~~~~DIliPaA~~~~It~~---------na~~-i------~akiIvEgAN~p-~t~~a~~-iL~~rGI~viP-D~ 380 (457)
++ +||+++=|-. ..++.. |+.+ | ..=+|.|..--| +|.+--. +|++++-+.+| ||
T Consensus 82 l~-~~dv~iI~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df 155 (436)
T COG0677 82 LK-ECDVFIICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDF 155 (436)
T ss_pred cc-cCCEEEEEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCccccee
Confidence 44 9999977643 222322 2211 1 456889999888 7776665 56664655554 54
No 147
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.80 E-value=1.6 Score=44.34 Aligned_cols=111 Identities=20% Similarity=0.145 Sum_probs=61.7
Q ss_pred CCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCC------Ceec-CCCccc
Q 012750 252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDG------GDSM-EPSELL 324 (457)
Q Consensus 252 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~------~~~i-~~~ell 324 (457)
.++|+|+|.|++|..++..|.+.|..|+ +.+.+ .+.+............+++ .... ++.+.+
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~-~~~r~----------~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~ 72 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVR-LWARR----------PEFAAALAAERENREYLPGVALPAELYPTADPEEAL 72 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEE-EEeCC----------HHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHH
Confidence 3589999999999999999999999877 44442 2222222221111111111 1111 122222
Q ss_pred ccccceeeccccCCccccccccccc-ceEEEecCCCCC-----CHHHHHHHHh---CCCe
Q 012750 325 AHECDVLIPCALGGVLKRENAADVK-AKFIIEAANHPT-----DPEADEILSK---RGVT 375 (457)
Q Consensus 325 ~~~~DIliPaA~~~~It~~na~~i~-akiIvEgAN~p~-----t~~a~~iL~~---rGI~ 375 (457)
.+||+++-|.....+ ++-.+.++ -.+|+.-+|+-. .....+.+.+ +++.
T Consensus 73 -~~aD~Vi~~v~~~~~-~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~ 130 (328)
T PRK14618 73 -AGADFAVVAVPSKAL-RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVA 130 (328)
T ss_pred -cCCCEEEEECchHHH-HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeE
Confidence 479999988766543 33334442 246777788521 2334456655 6653
No 148
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=93.80 E-value=0.28 Score=45.16 Aligned_cols=32 Identities=28% Similarity=0.457 Sum_probs=28.4
Q ss_pred eEEEEecChHHHHHHHHHH-HCCCEEEEEECCC
Q 012750 254 TFVIQGFGNVGSWAARLIH-ERGGKVIAVSDIT 285 (457)
Q Consensus 254 ~vaIqGfGnVG~~~a~~L~-~~GakVVaVsD~~ 285 (457)
||+|-|||.+|+.+++.+. +....||+|.|..
T Consensus 2 kVgINGfGRIGR~v~r~~~~~~~~evvaInd~~ 34 (151)
T PF00044_consen 2 KVGINGFGRIGRLVLRAALDQPDIEVVAINDPA 34 (151)
T ss_dssp EEEEESTSHHHHHHHHHHHTSTTEEEEEEEESS
T ss_pred EEEEECCCcccHHHHHhhcccceEEEEEEeccc
Confidence 7999999999999999887 4578999998874
No 149
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=93.79 E-value=0.73 Score=49.17 Aligned_cols=32 Identities=31% Similarity=0.499 Sum_probs=28.3
Q ss_pred CeEEEEecChHHHHHHHHHHH-CCCEEEEEECC
Q 012750 253 LTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDI 284 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~ 284 (457)
.||.|-|||.+|+.+++.+.+ .+.+||+|-|.
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp 118 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDP 118 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCC
Confidence 489999999999999999875 68999998774
No 150
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=93.76 E-value=0.13 Score=53.30 Aligned_cols=30 Identities=20% Similarity=0.471 Sum_probs=26.2
Q ss_pred EEEEecChHHHHHHHHHHH-CCCEEEEEECC
Q 012750 255 FVIQGFGNVGSWAARLIHE-RGGKVIAVSDI 284 (457)
Q Consensus 255 vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~ 284 (457)
|+|.|||.+|+.+++.+.+ .+.+||||+|.
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~ 31 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKT 31 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecC
Confidence 5899999999999998764 57899999985
No 151
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.76 E-value=0.24 Score=51.90 Aligned_cols=34 Identities=32% Similarity=0.410 Sum_probs=30.1
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
+.+.+|+|+|+|.+|..+++.|...|++|+ +.|.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~-v~d~ 198 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVT-ILDI 198 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEE-EEEC
Confidence 567889999999999999999999999866 5665
No 152
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.63 E-value=0.23 Score=50.22 Aligned_cols=54 Identities=24% Similarity=0.215 Sum_probs=45.4
Q ss_pred CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecC-hHHHHHHHHHHHCCCEEEEEECCC
Q 012750 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQGFG-NVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
-.++|..|+.. ++++++.+++|++++|+|-+ .||.-++.+|.++|+.|+ ++.+.
T Consensus 136 ~~PcTp~avi~----lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVt-i~hs~ 190 (281)
T PRK14183 136 FVPCTPLGVME----LLEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVD-ICHIF 190 (281)
T ss_pred CCCCcHHHHHH----HHHHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCC
Confidence 35789888854 55667999999999999976 899999999999999887 77663
No 153
>PRK07680 late competence protein ComER; Validated
Probab=93.51 E-value=0.16 Score=50.50 Aligned_cols=110 Identities=15% Similarity=0.265 Sum_probs=64.3
Q ss_pred eEEEEecChHHHHHHHHHHHCCC---EEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccccccc
Q 012750 254 TFVIQGFGNVGSWAARLIHERGG---KVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECD 329 (457)
Q Consensus 254 ~vaIqGfGnVG~~~a~~L~~~Ga---kVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~D 329 (457)
++.|+|.|++|+.+++.|.+.|. .-|.+.|.+ .+.+....++ +++.... ++.+++ .+||
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~----------~~~~~~~~~~------~~g~~~~~~~~~~~-~~aD 64 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRT----------PAKAYHIKER------YPGIHVAKTIEEVI-SQSD 64 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCC----------HHHHHHHHHH------cCCeEEECCHHHHH-HhCC
Confidence 68999999999999999998884 223355552 3333333222 2222222 223333 4899
Q ss_pred eeeccccCCcccc---ccccccc-ceEEEecCCCCCCHHHHHHHHhCCCeEeccc
Q 012750 330 VLIPCALGGVLKR---ENAADVK-AKFIIEAANHPTDPEADEILSKRGVTILPDI 380 (457)
Q Consensus 330 IliPaA~~~~It~---~na~~i~-akiIvEgAN~p~t~~a~~iL~~rGI~viPD~ 380 (457)
+++-|.....+.+ +-.+.++ -++|+.-+|+-......+.+..+.+.++|..
T Consensus 65 iVilav~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~~~~~r~~p~~ 119 (273)
T PRK07680 65 LIFICVKPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVPCQVARIIPSI 119 (273)
T ss_pred EEEEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCEEEECCCh
Confidence 9998875433211 1222332 4688888876433444555655667888853
No 154
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=93.51 E-value=0.78 Score=47.64 Aligned_cols=34 Identities=29% Similarity=0.500 Sum_probs=29.6
Q ss_pred CeEEEEecChHHHHHHHHHHH-CCCEEEEEECCCC
Q 012750 253 LTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDITG 286 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G 286 (457)
.||+|.|||.+|+..++.+.+ .+.++|+|.|...
T Consensus 6 lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~ 40 (338)
T PLN02358 6 IRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFI 40 (338)
T ss_pred eEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCC
Confidence 699999999999999998775 4799999998653
No 155
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=93.47 E-value=0.25 Score=50.17 Aligned_cols=109 Identities=25% Similarity=0.296 Sum_probs=66.6
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccceee
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLI 332 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DIli 332 (457)
.+|+++|+|++|+..|..|.+.|+.|. |.|.+ +++..+...+.| ++..+...=....+||+|
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~-v~~r~----------~~ka~~~~~~~G-------a~~a~s~~eaa~~aDvVi 62 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVT-VYNRT----------PEKAAELLAAAG-------ATVAASPAEAAAEADVVI 62 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEE-EEeCC----------hhhhhHHHHHcC-------CcccCCHHHHHHhCCEEE
Confidence 479999999999999999999999987 67663 344233222211 221111111234888888
Q ss_pred ccccC-----Ccccccc--cccc-cceEEEecCCC-C-CCHHHHHHHHhCCCeEecc
Q 012750 333 PCALG-----GVLKREN--AADV-KAKFIIEAANH-P-TDPEADEILSKRGVTILPD 379 (457)
Q Consensus 333 PaA~~-----~~It~~n--a~~i-~akiIvEgAN~-p-~t~~a~~iL~~rGI~viPD 379 (457)
-|-.. .++..+| ++.+ +-+++++-.+. | .+.+..+.++++|+.++=-
T Consensus 63 tmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDA 119 (286)
T COG2084 63 TMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDA 119 (286)
T ss_pred EecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEec
Confidence 77432 2333221 1212 35677776654 3 3566678899999988643
No 156
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=93.47 E-value=1.9 Score=43.73 Aligned_cols=135 Identities=19% Similarity=0.199 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcc
Q 012750 231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLK 310 (457)
Q Consensus 231 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~ 310 (457)
-+.|...+++ ..+.+++++++.|.|.|..++.++-.|...|++-+.|.+++-. ..++..++.+.-+.
T Consensus 107 D~~Gf~~~l~----~~~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~-------~~~ka~~la~~~~~-- 173 (288)
T PRK12749 107 DGTGHIRAIK----ESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE-------FFDKALAFAQRVNE-- 173 (288)
T ss_pred CHHHHHHHHH----hcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc-------HHHHHHHHHHHhhh--
Confidence 3567766654 4577889999999999999999999898899865658777421 12233333222110
Q ss_pred cCCC-CeecCCCc---cc--ccccceeeccccCCcccccc------cccc-cceEEEecCCCCC-CHHHHHHHHhCCCeE
Q 012750 311 DFDG-GDSMEPSE---LL--AHECDVLIPCALGGVLKREN------AADV-KAKFIIEAANHPT-DPEADEILSKRGVTI 376 (457)
Q Consensus 311 ~~~~-~~~i~~~e---ll--~~~~DIliPaA~~~~It~~n------a~~i-~akiIvEgAN~p~-t~~a~~iL~~rGI~v 376 (457)
.++. ....+.++ +. -.++|++|-|+.-+.-...+ ...+ ...+|.+-..+|. |+ --+.-+++|..+
T Consensus 174 ~~~~~~~~~~~~~~~~l~~~~~~aDivINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~-ll~~A~~~G~~~ 252 (288)
T PRK12749 174 NTDCVVTVTDLADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHMTK-LLQQAQQAGCKT 252 (288)
T ss_pred ccCceEEEechhhhhhhhhhcccCCEEEECCCCCCCCCCCCCCCCcHHHCCCCCEEEEecCCCccCH-HHHHHHHCCCeE
Confidence 0100 01111111 11 13689999988654322111 1123 2357888888885 44 344556677766
Q ss_pred ecc
Q 012750 377 LPD 379 (457)
Q Consensus 377 iPD 379 (457)
++.
T Consensus 253 ~~G 255 (288)
T PRK12749 253 IDG 255 (288)
T ss_pred ECC
Confidence 543
No 157
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.46 E-value=0.15 Score=49.72 Aligned_cols=112 Identities=23% Similarity=0.357 Sum_probs=62.7
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccc-c---ccc
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL-A---HEC 328 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell-~---~~~ 328 (457)
++++|.|.|.||+.+|+.|.+.|..|+.| |.+ .+.+.++....-...-+- +.. +..+.| + .++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~I-d~d----------~~~~~~~~~~~~~~~~v~-gd~-t~~~~L~~agi~~a 67 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLI-DRD----------EERVEEFLADELDTHVVI-GDA-TDEDVLEEAGIDDA 67 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEE-EcC----------HHHHHHHhhhhcceEEEE-ecC-CCHHHHHhcCCCcC
Confidence 57999999999999999999999999954 432 334443222110000000 000 122233 2 389
Q ss_pred ceeeccccCCcccc---ccc-ccccceEEEecCCCCCCHHHHHHHHhCC--CeEeccc
Q 012750 329 DVLIPCALGGVLKR---ENA-ADVKAKFIIEAANHPTDPEADEILSKRG--VTILPDI 380 (457)
Q Consensus 329 DIliPaA~~~~It~---~na-~~i~akiIvEgAN~p~t~~a~~iL~~rG--I~viPD~ 380 (457)
|+++=+...+..|- ..+ +.+..+-|+==+ .+++..++|.+-| ..+.|..
T Consensus 68 D~vva~t~~d~~N~i~~~la~~~~gv~~viar~---~~~~~~~~~~~~g~~~ii~Pe~ 122 (225)
T COG0569 68 DAVVAATGNDEVNSVLALLALKEFGVPRVIARA---RNPEHEKVLEKLGADVIISPEK 122 (225)
T ss_pred CEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEe---cCHHHHHHHHHcCCcEEECHHH
Confidence 99998876655442 112 223333333222 2566778888888 3445544
No 158
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=93.33 E-value=0.92 Score=46.91 Aligned_cols=31 Identities=35% Similarity=0.635 Sum_probs=27.0
Q ss_pred eEEEEecChHHHHHHHHHHHC---CCEEEEEECC
Q 012750 254 TFVIQGFGNVGSWAARLIHER---GGKVIAVSDI 284 (457)
Q Consensus 254 ~vaIqGfGnVG~~~a~~L~~~---GakVVaVsD~ 284 (457)
||+|=|||-+|+.+.|.+.+. ..+||+|-|.
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~ 34 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDL 34 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecC
Confidence 589999999999999998765 5899999874
No 159
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=93.33 E-value=0.29 Score=50.12 Aligned_cols=35 Identities=31% Similarity=0.616 Sum_probs=29.8
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
+++.=|+|+|.|.||+|++.+|.+.|.+=+-|.|-
T Consensus 72 l~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDf 106 (430)
T KOG2018|consen 72 LTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDF 106 (430)
T ss_pred hcCcEEEEEecCchhHHHHHHHHHhcCceEEEech
Confidence 78888999999999999999999999854445553
No 160
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=93.27 E-value=1 Score=46.59 Aligned_cols=32 Identities=25% Similarity=0.544 Sum_probs=27.8
Q ss_pred CeEEEEecChHHHHHHHHHHH-CCCEEEEEECC
Q 012750 253 LTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDI 284 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~ 284 (457)
.||+|=|||-+|+.+.|.+.+ ....||||-|.
T Consensus 3 ~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~ 35 (331)
T PRK15425 3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL 35 (331)
T ss_pred eEEEEEeeChHHHHHHHHHHHCCCCEEEEEecC
Confidence 489999999999999998764 46899999874
No 161
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=93.15 E-value=0.15 Score=52.24 Aligned_cols=112 Identities=21% Similarity=0.241 Sum_probs=68.0
Q ss_pred CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccc
Q 012750 248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHE 327 (457)
Q Consensus 248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~ 327 (457)
.++.|+||.|+|+|++|+.+|+.|...|.+|+++. .+..- ..|+ ..+.. ..+-++++ .+
T Consensus 132 ~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~-~~~~~--~~~~---------------~~~~~--~~~l~e~l-~~ 190 (312)
T PRK15469 132 YHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWS-RSRKS--WPGV---------------QSFAG--REELSAFL-SQ 190 (312)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEe-CCCCC--CCCc---------------eeecc--cccHHHHH-hc
Confidence 35789999999999999999999999999998653 32100 0010 01100 01112333 37
Q ss_pred cceeeccccCC-----ccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCCe-Eeccc
Q 012750 328 CDVLIPCALGG-----VLKRENAADVK-AKFIIEAANHPT-DPEA-DEILSKRGVT-ILPDI 380 (457)
Q Consensus 328 ~DIliPaA~~~-----~It~~na~~i~-akiIvEgAN~p~-t~~a-~~iL~~rGI~-viPD~ 380 (457)
||+++-|...+ .|+.+...+++ -.+++.-|-+++ ..++ -+.|.+.-|. ..=|+
T Consensus 191 aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDV 252 (312)
T PRK15469 191 TRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDV 252 (312)
T ss_pred CCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecC
Confidence 89988876543 34444444443 358888888884 4444 3577777664 33344
No 162
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=93.15 E-value=0.14 Score=52.76 Aligned_cols=105 Identities=17% Similarity=0.292 Sum_probs=66.9
Q ss_pred CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccc
Q 012750 248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHE 327 (457)
Q Consensus 248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~ 327 (457)
.++.|++|.|+|+|++|+.+|+.|...|.+|++. |.+. +..... + .+ .-+.++++ ..
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~-d~~~----------~~~~~~------~-~~----~~~l~ell-~~ 198 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGATITAY-DAYP----------NKDLDF------L-TY----KDSVKEAI-KD 198 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE-eCCh----------hHhhhh------h-hc----cCCHHHHH-hc
Confidence 4589999999999999999999999999999854 4321 111000 0 01 00223333 37
Q ss_pred cceeeccccCC-----ccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCCe
Q 012750 328 CDVLIPCALGG-----VLKRENAADVK-AKFIIEAANHPT-DPEA-DEILSKRGVT 375 (457)
Q Consensus 328 ~DIliPaA~~~-----~It~~na~~i~-akiIvEgAN~p~-t~~a-~~iL~~rGI~ 375 (457)
||+++-|...+ .++++....++ -.+++..+=+++ ..+| .+.|.+.-|.
T Consensus 199 aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~ 254 (330)
T PRK12480 199 ADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLL 254 (330)
T ss_pred CCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCee
Confidence 89998887543 34444444443 468888888884 4444 3677776664
No 163
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.13 E-value=0.057 Score=53.02 Aligned_cols=36 Identities=31% Similarity=0.628 Sum_probs=29.7
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
|+..+|+|.|.|.||+++++.|.+.|..=+.+.|.+
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 677899999999999999999999997433355543
No 164
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=93.09 E-value=0.17 Score=50.71 Aligned_cols=85 Identities=15% Similarity=0.107 Sum_probs=55.0
Q ss_pred CeEEEEecChHHHHHHHHHHHC---CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccccccc
Q 012750 253 LTFVIQGFGNVGSWAARLIHER---GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHEC 328 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~---GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~ 328 (457)
.||.|+|||++|+.+++.|... ++++++|.|+.. +...+.... ...+ +.++++..++
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~----------~~~~~~~~~---------~~~~~~l~~ll~~~~ 63 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAA----------DLPPALAGR---------VALLDGLPGLLAWRP 63 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCH----------HHHHHhhcc---------CcccCCHHHHhhcCC
Confidence 6899999999999999988653 378998877742 222221111 1122 3467778899
Q ss_pred ceeeccccCCcccccccccc--cceEEEec
Q 012750 329 DVLIPCALGGVLKRENAADV--KAKFIIEA 356 (457)
Q Consensus 329 DIliPaA~~~~It~~na~~i--~akiIvEg 356 (457)
|++|+||....+.+--..-+ .+.+|+-.
T Consensus 64 DlVVE~A~~~av~e~~~~iL~~g~dlvv~S 93 (267)
T PRK13301 64 DLVVEAAGQQAIAEHAEGCLTAGLDMIICS 93 (267)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 99999998776654322223 34555533
No 165
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=93.08 E-value=0.16 Score=51.85 Aligned_cols=119 Identities=24% Similarity=0.400 Sum_probs=74.2
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccc
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECD 329 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~D 329 (457)
+.|+-++|-|||+||...|..|.-.|++|+ |+..+. +.+|....+ +| +..+-+|.. .+.|
T Consensus 212 ~aGKv~Vv~GYGdVGKgCaqaLkg~g~~Vi-vTEiDP---------I~ALQAaMe------G~---~V~tm~ea~-~e~d 271 (434)
T KOG1370|consen 212 IAGKVAVVCGYGDVGKGCAQALKGFGARVI-VTEIDP---------ICALQAAME------GY---EVTTLEEAI-REVD 271 (434)
T ss_pred ecccEEEEeccCccchhHHHHHhhcCcEEE-EeccCc---------hHHHHHHhh------cc---EeeeHHHhh-hcCC
Confidence 788889999999999999999999999998 887642 445543222 22 333333332 3779
Q ss_pred eeecccc-CCccccccccccc------------ceEEEecCCCCC------CHHHHHHHHhCC---CeEecccccccCCc
Q 012750 330 VLIPCAL-GGVLKRENAADVK------------AKFIIEAANHPT------DPEADEILSKRG---VTILPDIYANSGGV 387 (457)
Q Consensus 330 IliPaA~-~~~It~~na~~i~------------akiIvEgAN~p~------t~~a~~iL~~rG---I~viPD~laNaGGV 387 (457)
|||-+.. .++|+.+..++.+ ..|=+-+-|-|. -|..|++....| |+..-.-+.|-|..
T Consensus 272 ifVTtTGc~dii~~~H~~~mk~d~IvCN~Ghfd~EiDv~~L~~~~~~~~~vk~QvD~~~~~~gr~iIlLAeGRLvNL~Ca 351 (434)
T KOG1370|consen 272 IFVTTTGCKDIITGEHFDQMKNDAIVCNIGHFDTEIDVKWLNTPALTWENVKPQVDRYILPNGKHIILLAEGRLVNLGCA 351 (434)
T ss_pred EEEEccCCcchhhHHHHHhCcCCcEEeccccccceeehhhccCCcceeeecccccceeeccCCcEEEEEecCceeecccc
Confidence 9998875 4678876555543 333333444431 244455544444 34455566777665
Q ss_pred e
Q 012750 388 T 388 (457)
Q Consensus 388 i 388 (457)
+
T Consensus 352 t 352 (434)
T KOG1370|consen 352 T 352 (434)
T ss_pred c
Confidence 4
No 166
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=93.04 E-value=0.22 Score=49.08 Aligned_cols=36 Identities=17% Similarity=0.430 Sum_probs=31.4
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
|+..+|.|+|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 688999999999999999999999998555577764
No 167
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=93.01 E-value=1.6 Score=39.94 Aligned_cols=32 Identities=31% Similarity=0.593 Sum_probs=27.7
Q ss_pred CeEEEEecChHHHHHHHHHHH-CCCEEEEEECC
Q 012750 253 LTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDI 284 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~ 284 (457)
.+|+|.|||.+|+.+++.+.+ .+.+++++.|.
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~ 33 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDL 33 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 479999999999999998874 58899998874
No 168
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=92.93 E-value=0.55 Score=51.34 Aligned_cols=35 Identities=20% Similarity=0.175 Sum_probs=30.7
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
..+.+|+|.|+|.+|..++..+...|++|+ +.|.+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~-v~d~~ 196 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVR-AFDTR 196 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 457899999999999999999999999976 66664
No 169
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=92.84 E-value=0.23 Score=48.94 Aligned_cols=36 Identities=19% Similarity=0.399 Sum_probs=31.1
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
+++.+|+|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 678899999999999999999999998655577654
No 170
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=92.83 E-value=0.35 Score=48.26 Aligned_cols=99 Identities=15% Similarity=0.182 Sum_probs=58.8
Q ss_pred CeEEEEe-cChHHHHHHHHHHH-CCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCC-Ccccccccc
Q 012750 253 LTFVIQG-FGNVGSWAARLIHE-RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEP-SELLAHECD 329 (457)
Q Consensus 253 ~~vaIqG-fGnVG~~~a~~L~~-~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~-~ell~~~~D 329 (457)
.+|+|.| +|.+|+.+++.+.+ .+.+++++.|....-. .|-|..++.... .+ +....++ +++ ..++|
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~--~~~~~~~~~~~~-------~~-gv~~~~d~~~l-~~~~D 70 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSL--QGTDAGELAGIG-------KV-GVPVTDDLEAV-ETDPD 70 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc--cCCCHHHhcCcC-------cC-CceeeCCHHHh-cCCCC
Confidence 4899999 79999999998875 6899999999532110 133443332110 01 1111122 233 45789
Q ss_pred eeeccccCCccccccccc---ccceEEEecCCCCCCHHH
Q 012750 330 VLIPCALGGVLKRENAAD---VKAKFIIEAANHPTDPEA 365 (457)
Q Consensus 330 IliPaA~~~~It~~na~~---i~akiIvEgAN~p~t~~a 365 (457)
++|.|+... .+.+++.. -+..+|+|=- ..|++-
T Consensus 71 vVIdfT~p~-~~~~~~~~al~~g~~vVigtt--g~~~e~ 106 (266)
T TIGR00036 71 VLIDFTTPE-GVLNHLKFALEHGVRLVVGTT--GFSEED 106 (266)
T ss_pred EEEECCChH-HHHHHHHHHHHCCCCEEEECC--CCCHHH
Confidence 999998443 33344433 3567888764 356543
No 171
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.80 E-value=0.38 Score=48.75 Aligned_cols=53 Identities=23% Similarity=0.249 Sum_probs=44.6
Q ss_pred CCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750 227 REAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 227 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
..++|.+|++.. +++++.+++|++++|+| ...||+-++.+|.++|+.|+ ++.+
T Consensus 137 ~~PcTp~aii~l----L~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt-~chs 190 (282)
T PRK14180 137 LESCTPKGIMTM----LREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVT-TCHR 190 (282)
T ss_pred cCCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EEcC
Confidence 357899888665 45579999999999999 57899999999999999987 6765
No 172
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=92.79 E-value=0.13 Score=49.24 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=31.3
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
|++.+|.|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 788999999999999999999999998444477765
No 173
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=92.72 E-value=0.069 Score=50.17 Aligned_cols=30 Identities=27% Similarity=0.342 Sum_probs=25.6
Q ss_pred eEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750 254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 254 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
+|+|+|.|.+|+..|..++..|.+|+ +.|.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~-l~d~ 30 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVT-LYDR 30 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEE-EE-S
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEE-EEEC
Confidence 68999999999999999999999998 6565
No 174
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=92.62 E-value=1 Score=47.71 Aligned_cols=32 Identities=34% Similarity=0.558 Sum_probs=28.0
Q ss_pred CeEEEEecChHHHHHHHHHHHC---CCEEEEEECC
Q 012750 253 LTFVIQGFGNVGSWAARLIHER---GGKVIAVSDI 284 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~---GakVVaVsD~ 284 (457)
.+|+|.|||.+|+.+.+.|.+. ..+|++|-|.
T Consensus 61 ~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd~ 95 (395)
T PLN03096 61 IKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDT 95 (395)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcCC
Confidence 6899999999999999999876 4699988774
No 175
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=92.56 E-value=0.42 Score=48.30 Aligned_cols=165 Identities=19% Similarity=0.184 Sum_probs=90.5
Q ss_pred eEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccccccceee
Q 012750 254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECDVLI 332 (457)
Q Consensus 254 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~DIli 332 (457)
+|.++|.|++|+.+++.|.+.|..|+ |.|.+ | +.+.+ .+ .| .... ++.++. .+||+++
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~-v~~~~-----~---~~~~~---~~-~g-------~~~~~s~~~~~-~~advVi 60 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLH-VTTIG-----P---VADEL---LS-LG-------AVSVETARQVT-EASDIIF 60 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEE-EEeCC-----H---hHHHH---HH-cC-------CeecCCHHHHH-hcCCEEE
Confidence 68999999999999999999999886 65652 1 11222 11 11 1111 233333 4889998
Q ss_pred ccccCC-----cccccc--ccc-ccceEEEecCCCC--CCHHHHHHHHhCCCeEecccccccCCce----------e---
Q 012750 333 PCALGG-----VLKREN--AAD-VKAKFIIEAANHP--TDPEADEILSKRGVTILPDIYANSGGVT----------V--- 389 (457)
Q Consensus 333 PaA~~~-----~It~~n--a~~-i~akiIvEgAN~p--~t~~a~~iL~~rGI~viPD~laNaGGVi----------~--- 389 (457)
-|-... ++..++ +.. .+-++|++-.... .+.+..+.+.++|+.++--- -+||.. +
T Consensus 61 ~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaP--VsGg~~~a~~g~l~~~~gG~ 138 (292)
T PRK15059 61 IMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAP--VSGGEIGAREGTLSIMVGGD 138 (292)
T ss_pred EeCCChHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEec--CCCCHHHHhcCcEEEEEcCC
Confidence 775432 222211 122 2347888776543 34556678999999876532 233332 1
Q ss_pred -hhHHHhhhc----c-c-CCCCH-------HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 012750 390 -SYFEWVQNI----Q-G-FMWEE-------DKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTL 441 (457)
Q Consensus 390 -S~~E~~qn~----~-~-~~w~~-------e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~ 441 (457)
..+|.++.+ - . ++..+ +-++.-+-......+.+.+..+++.|+++.+...++
T Consensus 139 ~~~~~~~~p~l~~~g~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l 204 (292)
T PRK15059 139 EAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQAL 204 (292)
T ss_pred HHHHHHHHHHHHHHcCCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 112222211 0 0 00110 112233333334556677778889999988776554
No 176
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.53 E-value=0.34 Score=49.32 Aligned_cols=53 Identities=21% Similarity=0.222 Sum_probs=45.0
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
.++|..|+.. ++++.+.+++|++++|+| ...||+-++.+|.++++.|+ +++++
T Consensus 140 ~PcTp~avi~----lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt-~chs~ 193 (294)
T PRK14187 140 IPCTPKGCLY----LIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVT-TVHSA 193 (294)
T ss_pred cCcCHHHHHH----HHHHhCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEE-EeCCC
Confidence 4689988864 556679999999999999 57799999999999999988 77764
No 177
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=92.49 E-value=0.17 Score=46.66 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=31.3
Q ss_pred CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEE
Q 012750 248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAV 281 (457)
Q Consensus 248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaV 281 (457)
++++|++|+|+|.|+||...++.|.+.|++|+=|
T Consensus 9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VI 42 (157)
T PRK06719 9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVV 42 (157)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 5789999999999999999999999999999844
No 178
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=92.41 E-value=3 Score=42.17 Aligned_cols=130 Identities=15% Similarity=0.154 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcc
Q 012750 231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLK 310 (457)
Q Consensus 231 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~ 310 (457)
-|.|...+++. .+.+++++++.|.|.|-+|+.++-.|.+.|++-+.|.|.+ .++..++.+.-. .
T Consensus 110 D~~Gf~~~L~~----~~~~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~----------~~ka~~La~~~~--~ 173 (283)
T PRK14027 110 DVSGFGRGMEE----GLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD----------TSRAQALADVIN--N 173 (283)
T ss_pred CHHHHHHHHHh----cCcCcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC----------HHHHHHHHHHHh--h
Confidence 46677777653 3446789999999999999999999999998666677763 333333332210 0
Q ss_pred cCCCC--eecCC---CcccccccceeeccccCCccccc----ccccc-cceEEEecCCCCC-CHHHHHHHHhCCCeEec
Q 012750 311 DFDGG--DSMEP---SELLAHECDVLIPCALGGVLKRE----NAADV-KAKFIIEAANHPT-DPEADEILSKRGVTILP 378 (457)
Q Consensus 311 ~~~~~--~~i~~---~ell~~~~DIliPaA~~~~It~~----na~~i-~akiIvEgAN~p~-t~~a~~iL~~rGI~viP 378 (457)
.++.. ...+. .+.+ .++|++|-|+.-+.-..+ ....+ +..+|.+-...|. || --+.-+++|..++.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~-~~~divINaTp~Gm~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~-ll~~A~~~G~~~~~ 250 (283)
T PRK14027 174 AVGREAVVGVDARGIEDVI-AAADGVVNATPMGMPAHPGTAFDVSCLTKDHWVGDVVYMPIETE-LLKAARALGCETLD 250 (283)
T ss_pred ccCcceEEecCHhHHHHHH-hhcCEEEEcCCCCCCCCCCCCCCHHHcCCCcEEEEcccCCCCCH-HHHHHHHCCCEEEc
Confidence 11110 01111 1122 368999988754432111 11112 3467888888885 44 34455667766543
No 179
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=92.39 E-value=0.25 Score=48.56 Aligned_cols=73 Identities=21% Similarity=0.280 Sum_probs=50.6
Q ss_pred CeEEEEecChHHHHHHHHHHHC--CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccce
Q 012750 253 LTFVIQGFGNVGSWAARLIHER--GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDV 330 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~--GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DI 330 (457)
++|.|+|+|..|..+.+++.+- .+++++|.|.+ .++.++..+. +......+-++++ .+.|+
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~----------~ek~~~~~~~------~~~~~~s~ide~~-~~~Dl 63 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRD----------EEKAKELEAS------VGRRCVSDIDELI-AEVDL 63 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCC----------HHHHHHHHhh------cCCCccccHHHHh-hccce
Confidence 3689999999999999988743 58999998884 3444443322 1111122345666 79999
Q ss_pred eeccccCCcccc
Q 012750 331 LIPCALGGVLKR 342 (457)
Q Consensus 331 liPaA~~~~It~ 342 (457)
+++||..+.+-+
T Consensus 64 vVEaAS~~Av~e 75 (255)
T COG1712 64 VVEAASPEAVRE 75 (255)
T ss_pred eeeeCCHHHHHH
Confidence 999998776544
No 180
>PRK14851 hypothetical protein; Provisional
Probab=92.38 E-value=0.11 Score=58.47 Aligned_cols=120 Identities=10% Similarity=0.116 Sum_probs=68.1
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhH-hhcCCcccCCCCeecCCCccccccc
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHK-DKTGSLKDFDGGDSMEPSELLAHEC 328 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~-~~~g~~~~~~~~~~i~~~ell~~~~ 328 (457)
|++.+|+|+|.|-||+.+++.|...|..=+-+.|.+- +++..|-+.. .....+ +.+..+. -.+.+.+...
T Consensus 41 L~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~-------ve~sNLNRQ~~~~~~dv-G~~Kv~v-~~~~l~~inP 111 (679)
T PRK14851 41 LAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQ-------FEPVNVNRQFGARVPSF-GRPKLAV-MKEQALSINP 111 (679)
T ss_pred HhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCE-------ecccccccCcCcChhhC-CCHHHHH-HHHHHHHhCC
Confidence 6789999999999999999999999985555777642 2222221100 000000 0011110 1122333333
Q ss_pred ceeeccccCCcccccccccc--cceEEEecCCCCCCH---HHHHHHHhCCCeEecc
Q 012750 329 DVLIPCALGGVLKRENAADV--KAKFIIEAANHPTDP---EADEILSKRGVTILPD 379 (457)
Q Consensus 329 DIliPaA~~~~It~~na~~i--~akiIvEgAN~p~t~---~a~~iL~~rGI~viPD 379 (457)
++=|.+ ...-|+++|++.+ ++.+|+++..++... ...+...++||.++--
T Consensus 112 ~~~I~~-~~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~ 166 (679)
T PRK14851 112 FLEITP-FPAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITA 166 (679)
T ss_pred CCeEEE-EecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 444443 3345677887764 788999999876322 1234456788877643
No 181
>PRK07340 ornithine cyclodeaminase; Validated
Probab=92.36 E-value=1.4 Score=44.90 Aligned_cols=115 Identities=12% Similarity=0.060 Sum_probs=71.1
Q ss_pred CCCCeEEEEecChHHHHHHHHHHH-CCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccccccc
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHEC 328 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~ 328 (457)
...+++.|.|.|..|+..++.+.. .+.+-|.|.|.+ .+...++.++-+.. ++ ....-+.++.+ .++
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~----------~~~a~~~a~~~~~~-~~-~~~~~~~~~av-~~a 189 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT----------AASAAAFCAHARAL-GP-TAEPLDGEAIP-EAV 189 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC----------HHHHHHHHHHHHhc-CC-eeEECCHHHHh-hcC
Confidence 467899999999999999998865 676666576663 34444444332211 11 11111223344 399
Q ss_pred ceeeccccC--CcccccccccccceEEEecCCCCCCHHHHHHHHhCCCeEeccc
Q 012750 329 DVLIPCALG--GVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDI 380 (457)
Q Consensus 329 DIliPaA~~--~~It~~na~~i~akiIvEgAN~p~t~~a~~iL~~rGI~viPD~ 380 (457)
||++=|+.. ..++. .-+-.+-+++=|++.|-..|.+..+-.+- .++-|-
T Consensus 190 DiVitaT~s~~Pl~~~--~~~~g~hi~~iGs~~p~~~El~~~~~~~a-~v~vD~ 240 (304)
T PRK07340 190 DLVVTATTSRTPVYPE--AARAGRLVVAVGAFTPDMAELAPRTVRGS-RLYVDD 240 (304)
T ss_pred CEEEEccCCCCceeCc--cCCCCCEEEecCCCCCCcccCCHHHHhhC-eEEEcC
Confidence 999998764 34543 22446779999999997777665444454 344353
No 182
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=92.33 E-value=2.6 Score=42.48 Aligned_cols=136 Identities=15% Similarity=0.217 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhc-CCcc
Q 012750 232 GRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKT-GSLK 310 (457)
Q Consensus 232 g~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~-g~~~ 310 (457)
+.|...+++ ..+.+++++++.|.|.|..|+.++..|.+.|++-|.|.+.+-.-+ + ..+++.+...+. ....
T Consensus 110 ~~G~~~~l~----~~~~~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~--~--~a~~l~~~l~~~~~~~~ 181 (289)
T PRK12548 110 GLGFVRNLR----EHGVDVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFY--E--RAEQTAEKIKQEVPECI 181 (289)
T ss_pred HHHHHHHHH----hcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHH--H--HHHHHHHHHhhcCCCce
Confidence 566666554 345678899999999999999999999999997444776631000 0 012222211111 1100
Q ss_pred cCCCCeecCCC-ccc--ccccceeeccccCCccccc------ccccc-cceEEEecCCCCC-CHHHHHHHHhCCCeEec
Q 012750 311 DFDGGDSMEPS-ELL--AHECDVLIPCALGGVLKRE------NAADV-KAKFIIEAANHPT-DPEADEILSKRGVTILP 378 (457)
Q Consensus 311 ~~~~~~~i~~~-ell--~~~~DIliPaA~~~~It~~------na~~i-~akiIvEgAN~p~-t~~a~~iL~~rGI~viP 378 (457)
.. ...++.. ++- -..+|++|-|..-+.-... ....+ +-.+|.+-..+|. || --+.-+++|..++.
T Consensus 182 -~~-~~d~~~~~~~~~~~~~~DilINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~-ll~~A~~~G~~~~~ 257 (289)
T PRK12548 182 -VN-VYDLNDTEKLKAEIASSDILVNATLVGMKPNDGETNIKDTSVFRKDLVVADTVYNPKKTK-LLEDAEAAGCKTVG 257 (289)
T ss_pred -eE-EechhhhhHHHhhhccCCEEEEeCCCCCCCCCCCCCCCcHHhcCCCCEEEEecCCCCCCH-HHHHHHHCCCeeeC
Confidence 00 0011111 111 1257999988754432211 11123 3357888888885 44 34455667766544
No 183
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=92.30 E-value=0.57 Score=52.10 Aligned_cols=136 Identities=16% Similarity=0.215 Sum_probs=80.9
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccc----cccc
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL----AHEC 328 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell----~~~~ 328 (457)
.+|+|.|||.+|+.+++.|.++|..++ +-|. |++.+.+..+. |.-.-|-++ +..+.| -.+|
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vv-vID~----------d~~~v~~~~~~-g~~v~~GDa---t~~~~L~~agi~~A 465 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRIT-VLER----------DISAVNLMRKY-GYKVYYGDA---TQLELLRAAGAEKA 465 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEE-EEEC----------CHHHHHHHHhC-CCeEEEeeC---CCHHHHHhcCCccC
Confidence 579999999999999999999999998 5565 34555544332 211111111 233444 2388
Q ss_pred ceeeccccCCcccc---cccccc--cceEEEecCCCCCCHHHHHHHHhCCCe-EecccccccCCceehhHHHhhh-cccC
Q 012750 329 DVLIPCALGGVLKR---ENAADV--KAKFIIEAANHPTDPEADEILSKRGVT-ILPDIYANSGGVTVSYFEWVQN-IQGF 401 (457)
Q Consensus 329 DIliPaA~~~~It~---~na~~i--~akiIvEgAN~p~t~~a~~iL~~rGI~-viPD~laNaGGVi~S~~E~~qn-~~~~ 401 (457)
|++|=|.-....|. ..+.+. +.++|+-. .+++..+.|++.|+- ++|+.+-.+ .+.-.. +...
T Consensus 466 ~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa----~~~~~~~~L~~~Ga~~vv~e~~es~-------l~l~~~~L~~l 534 (601)
T PRK03659 466 EAIVITCNEPEDTMKIVELCQQHFPHLHILARA----RGRVEAHELLQAGVTQFSRETFSSA-------LELGRKTLVSL 534 (601)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEe----CCHHHHHHHHhCCCCEEEccHHHHH-------HHHHHHHHHHc
Confidence 98887754432221 223332 56788843 356788899999995 567754432 222211 2234
Q ss_pred CCCHHHHHHHHHH
Q 012750 402 MWEEDKVNNELRR 414 (457)
Q Consensus 402 ~w~~e~v~~~l~~ 414 (457)
..+.+++.+.+++
T Consensus 535 g~~~~~~~~~~~~ 547 (601)
T PRK03659 535 GMHPHQAQRAQQH 547 (601)
T ss_pred CCCHHHHHHHHHH
Confidence 4566677666655
No 184
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=92.07 E-value=0.21 Score=46.64 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=30.3
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCe
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGA 287 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~ 287 (457)
|++++|+|+|||+-|..-|.-|.+.|.+|+ |....+.
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~-Vglr~~s 38 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVI-VGLREGS 38 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEE-EEE-TTC
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEE-EEecCCC
Confidence 578999999999999999999999999998 7766553
No 185
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=91.99 E-value=0.47 Score=49.18 Aligned_cols=36 Identities=22% Similarity=0.401 Sum_probs=31.4
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
|+..+|+|+|.|.+|+.+|+.|...|..=+.+.|.+
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 688999999999999999999999998545577764
No 186
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=91.97 E-value=0.21 Score=46.17 Aligned_cols=34 Identities=32% Similarity=0.489 Sum_probs=27.8
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
+...+|+|.|.|+||..+++.|...|++++ +.|.
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~-~~d~ 51 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGLGAEVV-VPDE 51 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHTT-EEE-EEES
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHCCCEEE-eccC
Confidence 566899999999999999999999999998 4554
No 187
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=91.92 E-value=0.21 Score=47.93 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=31.4
Q ss_pred CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 012750 248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs 282 (457)
++++|++|.|+|.|.||...++.|.+.|++|+-|+
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs 40 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVIS 40 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEc
Confidence 46899999999999999999999999999988443
No 188
>PLN02306 hydroxypyruvate reductase
Probab=91.84 E-value=0.23 Score=52.39 Aligned_cols=126 Identities=22% Similarity=0.259 Sum_probs=72.1
Q ss_pred CCCCCCCeEEEEecChHHHHHHHHHH-HCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcC-Cc---ccCC-CCeec-C
Q 012750 247 GQAIRDLTFVIQGFGNVGSWAARLIH-ERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTG-SL---KDFD-GGDSM-E 319 (457)
Q Consensus 247 g~~l~g~~vaIqGfGnVG~~~a~~L~-~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g-~~---~~~~-~~~~i-~ 319 (457)
|.++.|++|.|+|+|++|+.+|+.|. ..|.+|++ .|.... ..+.......+ .+ ...+ +.+.. +
T Consensus 160 g~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~-~d~~~~---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 229 (386)
T PLN02306 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQS---------TRLEKFVTAYGQFLKANGEQPVTWKRASS 229 (386)
T ss_pred CcCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEE-ECCCCc---------hhhhhhhhhhcccccccccccccccccCC
Confidence 44689999999999999999999985 78999984 344210 01100000000 00 0000 00111 2
Q ss_pred CCcccccccceeeccccC-----Cccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCCe-Eecccccc
Q 012750 320 PSELLAHECDVLIPCALG-----GVLKRENAADVK-AKFIIEAANHPT-DPEA-DEILSKRGVT-ILPDIYAN 383 (457)
Q Consensus 320 ~~ell~~~~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~~a-~~iL~~rGI~-viPD~laN 383 (457)
-++++. .|||++-+... +.|+++....+| -.+++.-|=+++ ..+| .+.|++.-|. ..=|+..+
T Consensus 230 L~ell~-~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~ 301 (386)
T PLN02306 230 MEEVLR-EADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFED 301 (386)
T ss_pred HHHHHh-hCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCC
Confidence 244443 68999887543 345555555554 468888888885 4444 3677776664 33454433
No 189
>PRK07877 hypothetical protein; Provisional
Probab=91.66 E-value=0.36 Score=54.85 Aligned_cols=125 Identities=13% Similarity=0.174 Sum_probs=70.6
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCC--EEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccc
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGG--KVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHE 327 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~ 327 (457)
|+..+|.|+|.| ||++++.+|...|. +++ +.|.+- +++..|-+.......+ +-+.++ +-.+.+.+..
T Consensus 105 L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~-lvD~D~-------ve~sNLnRq~~~~~di-G~~Kv~-~a~~~l~~in 173 (722)
T PRK07877 105 LGRLRIGVVGLS-VGHAIAHTLAAEGLCGELR-LADFDT-------LELSNLNRVPAGVFDL-GVNKAV-VAARRIAELD 173 (722)
T ss_pred HhcCCEEEEEec-HHHHHHHHHHHccCCCeEE-EEcCCE-------EcccccccccCChhhc-ccHHHH-HHHHHHHHHC
Confidence 788999999999 99999999999994 665 777642 2222222110000000 000000 0112233344
Q ss_pred cceeeccccCCcccccccccc--cceEEEecCCCCCC-HHHHHHHHhCCCeEecccccccCCce
Q 012750 328 CDVLIPCALGGVLKRENAADV--KAKFIIEAANHPTD-PEADEILSKRGVTILPDIYANSGGVT 388 (457)
Q Consensus 328 ~DIliPaA~~~~It~~na~~i--~akiIvEgAN~p~t-~~a~~iL~~rGI~viPD~laNaGGVi 388 (457)
.+|=|.+ +..-|+++|++.+ ++.+|+++.-+.-+ -...+.-.++||.+|=.- .++|.+
T Consensus 174 p~i~v~~-~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~--~~~g~~ 234 (722)
T PRK07877 174 PYLPVEV-FTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVLMAT--SDRGLL 234 (722)
T ss_pred CCCEEEE-EeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEc--CCCCCc
Confidence 4444443 3345677888775 78888888877533 223345678888887433 344554
No 190
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=91.56 E-value=0.47 Score=47.53 Aligned_cols=165 Identities=16% Similarity=0.167 Sum_probs=88.2
Q ss_pred EEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccccccceeeccc
Q 012750 257 IQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECDVLIPCA 335 (457)
Q Consensus 257 IqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~DIliPaA 335 (457)
++|.|++|..+++.|.+.|.+|+ +.|.+ .+.+.+..+. | .... ++.+.. .+||+++-|-
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~-v~dr~----------~~~~~~l~~~-g-------~~~~~s~~~~~-~~advVil~v 60 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVR-VFDLF----------PDAVEEAVAA-G-------AQAAASPAEAA-EGADRVITML 60 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEE-EEeCC----------HHHHHHHHHc-C-------CeecCCHHHHH-hcCCEEEEeC
Confidence 47999999999999999999876 55543 2333333322 1 1111 223333 3789998876
Q ss_pred cCCcccc-------ccccccc-ceEEEecCCCC--CCHHHHHHHHhCCCeEeccccc-------------ccCCceehhH
Q 012750 336 LGGVLKR-------ENAADVK-AKFIIEAANHP--TDPEADEILSKRGVTILPDIYA-------------NSGGVTVSYF 392 (457)
Q Consensus 336 ~~~~It~-------~na~~i~-akiIvEgAN~p--~t~~a~~iL~~rGI~viPD~la-------------NaGGVi~S~~ 392 (457)
....... .-.+.++ -++|+...+.. ++.+..+.+.++|+.++---+. -.||-- ..+
T Consensus 61 p~~~~~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~-~~~ 139 (288)
T TIGR01692 61 PAGQHVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVA-EEF 139 (288)
T ss_pred CChHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCH-HHH
Confidence 5422211 1122332 36777776543 2345567888999988663221 122221 223
Q ss_pred HHhhhc----cc-C-CC---CHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 012750 393 EWVQNI----QG-F-MW---EEDKV----NNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLG 442 (457)
Q Consensus 393 E~~qn~----~~-~-~w---~~e~v----~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A 442 (457)
+.++.+ .. . +- ...+. +..+.......+.+.+..+++.|+++.+...++.
T Consensus 140 ~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~ 202 (288)
T TIGR01692 140 AAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIAN 202 (288)
T ss_pred HHHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 322221 00 0 00 11122 2223333334566788888999999887665544
No 191
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=91.46 E-value=0.29 Score=50.59 Aligned_cols=32 Identities=22% Similarity=0.429 Sum_probs=30.1
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEE
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAV 281 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaV 281 (457)
|+|++|+|+|+|++|+..|+.|...|.+|+..
T Consensus 14 LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~ 45 (335)
T PRK13403 14 LQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVG 45 (335)
T ss_pred hCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEE
Confidence 89999999999999999999999999999843
No 192
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=91.40 E-value=2.2 Score=44.50 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=27.5
Q ss_pred CeEEEEecChHHHHHHHHHHH-CCCEEEEEECC
Q 012750 253 LTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDI 284 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~ 284 (457)
.||+|-|||-+|+.+.|.+.+ ....||+|-|.
T Consensus 3 ~ki~INGfGRIGR~~~r~~~~~~~~~vvaINd~ 35 (343)
T PRK07729 3 TKVAINGFGRIGRMVFRKAIKESAFEIVAINAS 35 (343)
T ss_pred eEEEEECcChHHHHHHHHHhhcCCcEEEEecCC
Confidence 489999999999999998765 46899999774
No 193
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=91.39 E-value=2.7 Score=42.79 Aligned_cols=29 Identities=17% Similarity=0.422 Sum_probs=26.4
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEE
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAV 281 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaV 281 (457)
++|+|+|.|.||+..|..|.+.|..|+.+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~ 31 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLI 31 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEE
Confidence 57999999999999999999999998854
No 194
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=91.34 E-value=5.7 Score=41.94 Aligned_cols=31 Identities=32% Similarity=0.500 Sum_probs=27.4
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
++|+|+|.|.||..+|..|.+.|.+|++ .|.
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~-~d~ 31 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTG-VDI 31 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEE-EEC
Confidence 3799999999999999999999999985 454
No 195
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=91.29 E-value=0.41 Score=48.28 Aligned_cols=52 Identities=21% Similarity=0.213 Sum_probs=46.5
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEE
Q 012750 230 ATGRGVVYATEALLAEHGQAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (457)
Q Consensus 230 aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (457)
-|+|-.+..+.+.++++|++++..+|+|.|. |.+|+.+++.|..++.++.-+
T Consensus 145 ~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll 197 (351)
T COG5322 145 HTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELL 197 (351)
T ss_pred cchHHHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEe
Confidence 5888888888888889999999999999997 999999999999888877644
No 196
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=91.28 E-value=1.7 Score=45.22 Aligned_cols=96 Identities=26% Similarity=0.321 Sum_probs=56.1
Q ss_pred CeEEEEecChHHHHHHHHHHH-CCCEEEEEECCCCeeeCCCCCCHHHH---HHhHhhcCCccc---CC------CCeec-
Q 012750 253 LTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDITGAVKNADGIDIHKL---LAHKDKTGSLKD---FD------GGDSM- 318 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G~iynp~GLDi~~L---~~~~~~~g~~~~---~~------~~~~i- 318 (457)
.||+|-|||-+|+.+.|.+.+ ...+||+|-|... |++.+ ++|=-..|.+.. +. +++.|
T Consensus 3 ~ki~INGfGRIGr~v~r~~~~~~~~~vvaiNd~~~--------~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~ 74 (337)
T PTZ00023 3 VKLGINGFGRIGRLVFRAALEREDVEVVAINDPFM--------TLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVH 74 (337)
T ss_pred eEEEEECcChHHHHHHHHHHhcCCeEEEEecCCCC--------ChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEE
Confidence 489999999999999998764 4689999977422 33333 222112333211 11 11111
Q ss_pred -----CCCc--ccccccceeeccccCCccccccccc---ccceEEEecC
Q 012750 319 -----EPSE--LLAHECDVLIPCALGGVLKRENAAD---VKAKFIIEAA 357 (457)
Q Consensus 319 -----~~~e--ll~~~~DIliPaA~~~~It~~na~~---i~akiIvEgA 357 (457)
+|.+ |-+..+|+.+.|+... .+.+.++. -.||.|.-.|
T Consensus 75 ~~~~~dp~~lpW~~~gvDiVle~tG~~-~s~~~a~~~l~aGak~V~iSa 122 (337)
T PTZ00023 75 VFFEKDPAAIPWGKNGVDVVCESTGVF-LTKEKAQAHLKGGAKKVIMSA 122 (337)
T ss_pred EEeCCChhhCCccccCCCEEEEecchh-cCHHHHHHHhhCCCEEEEeCC
Confidence 1222 2256899999997543 55555543 3566666665
No 197
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=91.27 E-value=0.29 Score=50.67 Aligned_cols=31 Identities=26% Similarity=0.434 Sum_probs=29.2
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEE
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIA 280 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVa 280 (457)
+++++|+|+|+|++|+..|+.|.+.|.+|+.
T Consensus 15 L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv 45 (330)
T PRK05479 15 IKGKKVAIIGYGSQGHAHALNLRDSGVDVVV 45 (330)
T ss_pred hCCCEEEEEeeHHHHHHHHHHHHHCCCEEEE
Confidence 8899999999999999999999999999873
No 198
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=91.22 E-value=2 Score=44.59 Aligned_cols=32 Identities=28% Similarity=0.470 Sum_probs=27.4
Q ss_pred CeEEEEecChHHHHHHHHHHHC---CCEEEEEECC
Q 012750 253 LTFVIQGFGNVGSWAARLIHER---GGKVIAVSDI 284 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~---GakVVaVsD~ 284 (457)
.||+|=|||-+|+.+.|.+.+. ..+||+|-|.
T Consensus 2 ~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~ 36 (337)
T PRK07403 2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAINDT 36 (337)
T ss_pred eEEEEEccChHHHHHHHHHHhccCCCeEEEEecCC
Confidence 4899999999999999987654 5899999774
No 199
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=91.17 E-value=0.28 Score=47.21 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=31.3
Q ss_pred CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 012750 248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs 282 (457)
++++|++|+|+|.|.||..-++.|.+.|++|+-|+
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvs 39 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIA 39 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEc
Confidence 35899999999999999999999999999998443
No 200
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=91.16 E-value=1.1 Score=52.62 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=31.2
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
..|++|+|+|.|..|..+|..|..+|++|+ |.|.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vt-v~E~ 414 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVT-AIDG 414 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEE-EEcc
Confidence 478999999999999999999999999998 6664
No 201
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=91.15 E-value=0.41 Score=45.85 Aligned_cols=55 Identities=25% Similarity=0.363 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHH--HHHCCCEEEEEECCCC
Q 012750 231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARL--IHERGGKVIAVSDITG 286 (457)
Q Consensus 231 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~--L~~~GakVVaVsD~~G 286 (457)
-||-|-+-.+.+.+.+|.+ +-..++|+|.||.|++++.+ ..+.|.+|+++.|.+.
T Consensus 64 ~GYnV~~L~~ff~~~Lg~~-~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~ 120 (211)
T COG2344 64 YGYNVKYLRDFFDDLLGQD-KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDP 120 (211)
T ss_pred CCccHHHHHHHHHHHhCCC-cceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCH
Confidence 3555666666666677777 44679999999999999864 3467999999999853
No 202
>PRK14852 hypothetical protein; Provisional
Probab=91.14 E-value=0.61 Score=54.44 Aligned_cols=123 Identities=11% Similarity=0.063 Sum_probs=71.3
Q ss_pred CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhH-hhcCCcccCCCCeecCCCcccccc
Q 012750 249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHK-DKTGSLKDFDGGDSMEPSELLAHE 327 (457)
Q Consensus 249 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~-~~~g~~~~~~~~~~i~~~ell~~~ 327 (457)
.|+..+|+|+|.|-||+.+++.|...|..=+.+.|-+- ++...|-+.. .....+ +-+.++ +-.+.+.+..
T Consensus 329 kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~-------Ve~SNLNRQ~l~~~~dI-G~~Kae-vaa~~l~~IN 399 (989)
T PRK14852 329 RLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDA-------YSPVNLNRQYGASIASF-GRGKLD-VMTERALSVN 399 (989)
T ss_pred HHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE-------ecccccccccCCChhhC-CChHHH-HHHHHHHHHC
Confidence 38899999999999999999999999986666777642 2222221100 000000 000000 0011233444
Q ss_pred cceeeccccCCcccccccccc--cceEEEecCCCCCCHHHH---HHHHhCCCeEecccc
Q 012750 328 CDVLIPCALGGVLKRENAADV--KAKFIIEAANHPTDPEAD---EILSKRGVTILPDIY 381 (457)
Q Consensus 328 ~DIliPaA~~~~It~~na~~i--~akiIvEgAN~p~t~~a~---~iL~~rGI~viPD~l 381 (457)
.++=|.+-- .-|+++|++.+ ++-+|+++..++.+.... ....++||.++---.
T Consensus 400 P~v~I~~~~-~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~ 457 (989)
T PRK14852 400 PFLDIRSFP-EGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGP 457 (989)
T ss_pred CCCeEEEEe-cCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeec
Confidence 444444422 24678888875 788999999886543222 334788887765443
No 203
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=91.09 E-value=0.48 Score=45.97 Aligned_cols=50 Identities=24% Similarity=0.229 Sum_probs=40.4
Q ss_pred CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcC
Q 012750 248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTG 307 (457)
Q Consensus 248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g 307 (457)
.+++|++|+|+|.|.||..=+++|.+.|++|+-||+.. .+++..+.++.+
T Consensus 8 ~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~----------~~el~~~~~~~~ 57 (210)
T COG1648 8 LDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEF----------EPELKALIEEGK 57 (210)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc----------cHHHHHHHHhcC
Confidence 46899999999999999999999999999999787763 245655555433
No 204
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=90.99 E-value=5.1 Score=40.30 Aligned_cols=124 Identities=15% Similarity=0.186 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcc
Q 012750 231 TGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLK 310 (457)
Q Consensus 231 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~ 310 (457)
-+.|...+++. .+.+ .+++++|.|.|-.++.++..|.+.|++-|.|.+.+ .++..++.+.-+
T Consensus 106 D~~Gf~~~L~~----~~~~-~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~----------~~~a~~la~~~~--- 167 (272)
T PRK12550 106 DYIAIAKLLAS----YQVP-PDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARN----------EKTGKALAELYG--- 167 (272)
T ss_pred CHHHHHHHHHh----cCCC-CCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC----------HHHHHHHHHHhC---
Confidence 45677666653 3554 35699999999999999999999998655577764 233333332211
Q ss_pred cCCCCeecCCCcccccccceeeccccCCcccccc-----c--ccc-cceEEEecCCCCCCHHHHHHHHhCCCeEec
Q 012750 311 DFDGGDSMEPSELLAHECDVLIPCALGGVLKREN-----A--ADV-KAKFIIEAANHPTDPEADEILSKRGVTILP 378 (457)
Q Consensus 311 ~~~~~~~i~~~ell~~~~DIliPaA~~~~It~~n-----a--~~i-~akiIvEgAN~p~t~~a~~iL~~rGI~viP 378 (457)
++ .. +++-...+|++|-|+.-+.-...+ . ..+ +..+|.+-..+|....--+.-+++|..++.
T Consensus 168 -~~----~~-~~~~~~~~dlvINaTp~Gm~~~~~~~~~pi~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~~~i~ 237 (272)
T PRK12550 168 -YE----WR-PDLGGIEADILVNVTPIGMAGGPEADKLAFPEAEIDAASVVFDVVALPAETPLIRYARARGKTVIT 237 (272)
T ss_pred -Cc----ch-hhcccccCCEEEECCccccCCCCccccCCCCHHHcCCCCEEEEeecCCccCHHHHHHHHCcCeEeC
Confidence 10 00 111124689999998654332111 1 112 235788888777432234455677766654
No 205
>PRK06141 ornithine cyclodeaminase; Validated
Probab=90.99 E-value=1.9 Score=43.97 Aligned_cols=116 Identities=15% Similarity=0.134 Sum_probs=69.1
Q ss_pred CCCCeEEEEecChHHHHHHHHHHH-CCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccccc
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHE 327 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~ 327 (457)
...+++.|+|.|.+|+..++.+.. ++.+=|-|.+.+ .+...++.++-... +. ..... +.++.+ .+
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs----------~~~a~~~a~~~~~~-g~-~~~~~~~~~~av-~~ 189 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRD----------PAKAEALAAELRAQ-GF-DAEVVTDLEAAV-RQ 189 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCC----------HHHHHHHHHHHHhc-CC-ceEEeCCHHHHH-hc
Confidence 467899999999999999986654 554433366653 34444443331110 10 11222 122333 38
Q ss_pred cceeeccccCC--cccccccccccceEEEecCCCCCCHHHHHHHHhCCCeEecc
Q 012750 328 CDVLIPCALGG--VLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPD 379 (457)
Q Consensus 328 ~DIliPaA~~~--~It~~na~~i~akiIvEgAN~p~t~~a~~iL~~rGI~viPD 379 (457)
|||++=|+... +++.+.++. .+-+.+=|++.|...|.+..+.+++..|+=|
T Consensus 190 aDIVi~aT~s~~pvl~~~~l~~-g~~i~~ig~~~~~~~El~~~~~~~a~~~vD~ 242 (314)
T PRK06141 190 ADIISCATLSTEPLVRGEWLKP-GTHLDLVGNFTPDMRECDDEAIRRASVYVDT 242 (314)
T ss_pred CCEEEEeeCCCCCEecHHHcCC-CCEEEeeCCCCcccccCCHHHHhcCcEEEcC
Confidence 99998776532 344443322 4467778888888888887778888766544
No 206
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=90.77 E-value=4.8 Score=40.51 Aligned_cols=115 Identities=21% Similarity=0.247 Sum_probs=70.8
Q ss_pred CeEEEEecChHHHHHHHHHHHCC----CEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccccccc
Q 012750 253 LTFVIQGFGNVGSWAARLIHERG----GKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHEC 328 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~G----akVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~ 328 (457)
+++.++|+||+|+.++.-|.+.| ..|+ |++.+ .+.+.++.++ |+.. ..++.+-+..++
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~-v~~~~----------~e~~~~l~~~------~g~~-~~~~~~~~~~~a 63 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEII-VTNRS----------EEKRAALAAE------YGVV-TTTDNQEAVEEA 63 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEE-EeCCC----------HHHHHHHHHH------cCCc-ccCcHHHHHhhC
Confidence 47999999999999999999988 3555 77763 3444334333 3222 123333445689
Q ss_pred ceeeccccCCcccccccccc----cceEEEecCCCCCCHHHHHHHH-hCCCeEecccccccCC
Q 012750 329 DVLIPCALGGVLKRENAADV----KAKFIIEAANHPTDPEADEILS-KRGVTILPDIYANSGG 386 (457)
Q Consensus 329 DIliPaA~~~~It~~na~~i----~akiIvEgAN~p~t~~a~~iL~-~rGI~viPD~laNaGG 386 (457)
|+++.|--...+ ++...++ +-|+|+--|=+-....-.+.|- .+=+.+.|..-+-.|-
T Consensus 64 dvv~LavKPq~~-~~vl~~l~~~~~~~lvISiaAGv~~~~l~~~l~~~~vvR~MPNt~a~vg~ 125 (266)
T COG0345 64 DVVFLAVKPQDL-EEVLSKLKPLTKDKLVISIAAGVSIETLERLLGGLRVVRVMPNTPALVGA 125 (266)
T ss_pred CEEEEEeChHhH-HHHHHHhhcccCCCEEEEEeCCCCHHHHHHHcCCCceEEeCCChHHHHcC
Confidence 999988544322 2223333 4677777766544444555664 3335788987766553
No 207
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=90.68 E-value=0.56 Score=48.69 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=30.6
Q ss_pred CCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750 251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 251 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
.|.+|+|.|+|-+|..++++....|++|++++-+
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~ 199 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRS 199 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCC
Confidence 5899999999999999999999899999987644
No 208
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=90.64 E-value=6.2 Score=39.48 Aligned_cols=114 Identities=17% Similarity=0.249 Sum_probs=68.3
Q ss_pred CeEEEEecChHHHHHHHHHHHCCC----EEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccccc
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGG----KVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHE 327 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~Ga----kVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~ 327 (457)
+++.++|+|++|+.+++-|.+.|. +|+ ++|.+ .+.+.+..++.+ .+.. ++.+++ .+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~-v~~r~----------~~~~~~l~~~~g-------~~~~~~~~e~~-~~ 63 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQII-CSDLN----------VSNLKNASDKYG-------ITITTNNNEVA-NS 63 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEE-EECCC----------HHHHHHHHHhcC-------cEEeCCcHHHH-hh
Confidence 479999999999999999988874 344 44542 344444333222 1222 233443 48
Q ss_pred cceeeccccCCcccc---cccccccc-eEEEecCCCCCCHHHHHHHHh--CCCeEecccccccC
Q 012750 328 CDVLIPCALGGVLKR---ENAADVKA-KFIIEAANHPTDPEADEILSK--RGVTILPDIYANSG 385 (457)
Q Consensus 328 ~DIliPaA~~~~It~---~na~~i~a-kiIvEgAN~p~t~~a~~iL~~--rGI~viPD~laNaG 385 (457)
|||+|-|-....+.+ +..+.++. ++|+.-+-+-....-.+.|.. +=++++|-.-+-.|
T Consensus 64 aDiIiLavkP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg 127 (272)
T PRK12491 64 ADILILSIKPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVG 127 (272)
T ss_pred CCEEEEEeChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHc
Confidence 999998876533221 22222333 488888776554555566643 34578888766544
No 209
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=90.62 E-value=0.58 Score=55.21 Aligned_cols=114 Identities=17% Similarity=0.204 Sum_probs=69.6
Q ss_pred CCCeEEEEecChHHHHHHHHHHHC-CCE------------EEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCe-
Q 012750 251 RDLTFVIQGFGNVGSWAARLIHER-GGK------------VIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGD- 316 (457)
Q Consensus 251 ~g~~vaIqGfGnVG~~~a~~L~~~-Gak------------VVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~- 316 (457)
+.++|+|.|.|.||+..++.|.+. ++. +|+|+|.+ .+.+.+..+. +++.+
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~----------~~~a~~la~~------~~~~~~ 631 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLY----------LKDAKETVEG------IENAEA 631 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCC----------HHHHHHHHHh------cCCCce
Confidence 467999999999999999999875 333 57788874 3444433332 22211
Q ss_pred -e--c-CCCcccc--cccceeeccccCCccccccccc---ccceEEEecCCCCCCHHHHHHHHhCCCeEecccc
Q 012750 317 -S--M-EPSELLA--HECDVLIPCALGGVLKRENAAD---VKAKFIIEAANHPTDPEADEILSKRGVTILPDIY 381 (457)
Q Consensus 317 -~--i-~~~ell~--~~~DIliPaA~~~~It~~na~~---i~akiIvEgAN~p~t~~a~~iL~~rGI~viPD~l 381 (457)
. + +.+++.. .++|++|-|... ..+.+-+.. .+.-+++|.-..+-+.+.++.-+++|+.++|++-
T Consensus 632 v~lDv~D~e~L~~~v~~~DaVIsalP~-~~H~~VAkaAieaGkHvv~eky~~~e~~~L~e~Ak~AGV~~m~e~G 704 (1042)
T PLN02819 632 VQLDVSDSESLLKYVSQVDVVISLLPA-SCHAVVAKACIELKKHLVTASYVSEEMSALDSKAKEAGITILCEMG 704 (1042)
T ss_pred EEeecCCHHHHHHhhcCCCEEEECCCc-hhhHHHHHHHHHcCCCEEECcCCHHHHHHHHHHHHHcCCEEEECCc
Confidence 1 2 2244554 479999988654 344443332 4556777762222223334567788888888764
No 210
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=90.56 E-value=0.69 Score=47.31 Aligned_cols=117 Identities=21% Similarity=0.168 Sum_probs=64.1
Q ss_pred CCCeEEEEecChHHHHHHHHHH-HCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccc----
Q 012750 251 RDLTFVIQGFGNVGSWAARLIH-ERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA---- 325 (457)
Q Consensus 251 ~g~~vaIqGfGnVG~~~a~~L~-~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~---- 325 (457)
+..+|+|+|.|++|...+..+. ..+.++++++|.+. + .+ .++..++.|--..|. +-++++.
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~-----e---s~-gla~A~~~Gi~~~~~-----~ie~LL~~~~~ 68 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDP-----E---SD-GLARARRLGVATSAE-----GIDGLLAMPEF 68 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCCh-----h---hH-HHHHHHHcCCCcccC-----CHHHHHhCcCC
Confidence 4578999999999998666555 45889999998742 1 11 112223222111111 1234554
Q ss_pred cccceeeccccCCcccccccccc---cceEEEec--CCCCC-CHHH--HHHHH--hCCCeEeccccc
Q 012750 326 HECDVLIPCALGGVLKRENAADV---KAKFIIEA--ANHPT-DPEA--DEILS--KRGVTILPDIYA 382 (457)
Q Consensus 326 ~~~DIliPaA~~~~It~~na~~i---~akiIvEg--AN~p~-t~~a--~~iL~--~rGI~viPD~la 382 (457)
.++|+++-|+. +..+.+++.+. .+.+|.+- +++|+ -|+. ++.+. ..++...|.-..
T Consensus 69 ~dIDiVf~AT~-a~~H~e~a~~a~eaGk~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~~at 134 (302)
T PRK08300 69 DDIDIVFDATS-AGAHVRHAAKLREAGIRAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGGQAT 134 (302)
T ss_pred CCCCEEEECCC-HHHHHHHHHHHHHcCCeEEECCccccCCcccCcCCHHHHhcccCCCEEECccHHH
Confidence 36899888864 34555655543 45555543 24452 2221 23333 346666665433
No 211
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=90.14 E-value=0.49 Score=48.53 Aligned_cols=34 Identities=26% Similarity=0.359 Sum_probs=29.4
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSD 283 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD 283 (457)
|+|++|+|+|+|++|+.+|+-|.+.|.+|+...+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~ 34 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLR 34 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEEC
Confidence 5789999999999999999999999988763333
No 212
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=90.13 E-value=0.84 Score=47.35 Aligned_cols=101 Identities=18% Similarity=0.239 Sum_probs=58.7
Q ss_pred hCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccc
Q 012750 246 HGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA 325 (457)
Q Consensus 246 ~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~ 325 (457)
+|-++.|+||.|.|+|..|+.+|+.|...|.+|. -+.... ...+...++- ++.++-++++
T Consensus 156 ~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~-y~~r~~-------~~~~~~~~~~-----------~~~~d~~~~~- 215 (336)
T KOG0069|consen 156 LGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVIL-YHSRTQ-------LPPEEAYEYY-----------AEFVDIEELL- 215 (336)
T ss_pred ccccccCCEEEEecCcHHHHHHHHhhhhccceee-eecccC-------CchhhHHHhc-----------ccccCHHHHH-
Confidence 4667999999999999999999999998884443 333321 2222222211 1123333444
Q ss_pred cccceeeccccCC-----cccccccccc-cceEEEecCCCCC-CHHHH
Q 012750 326 HECDVLIPCALGG-----VLKRENAADV-KAKFIIEAANHPT-DPEAD 366 (457)
Q Consensus 326 ~~~DIliPaA~~~-----~It~~na~~i-~akiIvEgAN~p~-t~~a~ 366 (457)
..+|+++-|-..+ .+|.+-.... +.-+||..|=+++ ..++.
T Consensus 216 ~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l 263 (336)
T KOG0069|consen 216 ANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEAL 263 (336)
T ss_pred hhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHH
Confidence 3678887775433 2333333333 3347777777774 44443
No 213
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=90.06 E-value=0.3 Score=43.57 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=26.4
Q ss_pred eEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 254 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
+|.|.|.|.+|+.+++.|...|.+=+.+.|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 58999999999999999999998444366653
No 214
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.87 E-value=1.1 Score=44.84 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=27.7
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
++|+|+|.|.+|..+|..|...|..|+ +.|.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~-l~d~ 35 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVL-LNDV 35 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEE-EEeC
Confidence 579999999999999999999999987 5565
No 215
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=89.85 E-value=0.86 Score=46.92 Aligned_cols=44 Identities=30% Similarity=0.419 Sum_probs=35.8
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHh
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKD 304 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~ 304 (457)
....+|+|.|.|-||.++|++..-.|++|+ |-|. +++.|..+..
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vt-ild~----------n~~rl~~ldd 209 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVT-ILDL----------NIDRLRQLDD 209 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeE-EEec----------CHHHHhhhhH
Confidence 456689999999999999999999999987 7775 4666665544
No 216
>PRK14982 acyl-ACP reductase; Provisional
Probab=89.84 E-value=0.94 Score=47.09 Aligned_cols=132 Identities=20% Similarity=0.292 Sum_probs=82.6
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCCeEEEEec-ChHHHHHHHHHHHC-CC-EEEEEECCCCeeeCCCCCCHHHHHHhHhhc
Q 012750 230 ATGRGVVYATEALLAEHGQAIRDLTFVIQGF-GNVGSWAARLIHER-GG-KVIAVSDITGAVKNADGIDIHKLLAHKDKT 306 (457)
Q Consensus 230 aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~-Ga-kVVaVsD~~G~iynp~GLDi~~L~~~~~~~ 306 (457)
.|.+-....++.+.+.+|.++++++|+|.|. |.+|+.+++.|.++ |. +++ +.+.+ .+.+.+...+.
T Consensus 133 ~T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~li-lv~R~----------~~rl~~La~el 201 (340)
T PRK14982 133 HTAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELL-LVARQ----------QERLQELQAEL 201 (340)
T ss_pred hHHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEE-EEcCC----------HHHHHHHHHHh
Confidence 4666666778888888899999999999998 89999999999754 64 666 44442 22333322221
Q ss_pred CCcccCCCCeecCCCcccccccceeeccccC--C-cccccccccccceEEEecCCCC-CCHHHHHHHHhCCCeEeccccc
Q 012750 307 GSLKDFDGGDSMEPSELLAHECDVLIPCALG--G-VLKRENAADVKAKFIIEAANHP-TDPEADEILSKRGVTILPDIYA 382 (457)
Q Consensus 307 g~~~~~~~~~~i~~~ell~~~~DIliPaA~~--~-~It~~na~~i~akiIvEgAN~p-~t~~a~~iL~~rGI~viPD~la 382 (457)
..+...+-++.+ .++|+++=|+-. . .|+.+.+. +-.+|++.|.-. +.|+.. - ||+..
T Consensus 202 ------~~~~i~~l~~~l-~~aDiVv~~ts~~~~~~I~~~~l~--~~~~viDiAvPRDVd~~v~---------~-~~V~v 262 (340)
T PRK14982 202 ------GGGKILSLEEAL-PEADIVVWVASMPKGVEIDPETLK--KPCLMIDGGYPKNLDTKVQ---------G-PGIHV 262 (340)
T ss_pred ------ccccHHhHHHHH-ccCCEEEECCcCCcCCcCCHHHhC--CCeEEEEecCCCCCCcccC---------C-CCEEE
Confidence 111111112333 268998877743 3 26665553 568999999854 555431 1 66666
Q ss_pred ccCCceehh
Q 012750 383 NSGGVTVSY 391 (457)
Q Consensus 383 NaGGVi~S~ 391 (457)
=-||++.-.
T Consensus 263 ~~gG~V~~p 271 (340)
T PRK14982 263 LKGGIVEHS 271 (340)
T ss_pred EeCCccccC
Confidence 566765533
No 217
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=89.83 E-value=0.71 Score=45.99 Aligned_cols=106 Identities=15% Similarity=0.222 Sum_probs=60.6
Q ss_pred CeEEEEecChHHHHHHHHHHHC-CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecC-CCcccccccce
Q 012750 253 LTFVIQGFGNVGSWAARLIHER-GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSME-PSELLAHECDV 330 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~-~~ell~~~~DI 330 (457)
+||+|+|+|++|+..++.|.+. +..+++|++... . .+...+.... +....+ .+++ ..++|+
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~-----~---~~~~~~~~~~--------~~~~~~d~~~l-~~~~Dv 64 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEH-----S---IDAVRRALGE--------AVRVVSSVDAL-PQRPDL 64 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCC-----C---HHHHhhhhcc--------CCeeeCCHHHh-ccCCCE
Confidence 5899999999999999988765 688888885422 1 1111111100 111122 2345 667999
Q ss_pred eeccccCCccccccccc-c--cceEEEecCCCCCCHH----HHHHHHhCCCeE
Q 012750 331 LIPCALGGVLKRENAAD-V--KAKFIIEAANHPTDPE----ADEILSKRGVTI 376 (457)
Q Consensus 331 liPaA~~~~It~~na~~-i--~akiIvEgAN~p~t~~----a~~iL~~rGI~v 376 (457)
++.|+..... .+.+.. + ++.++++-.=....++ -.+..+++|..+
T Consensus 65 Vve~t~~~~~-~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l 116 (265)
T PRK13303 65 VVECAGHAAL-KEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGARL 116 (265)
T ss_pred EEECCCHHHH-HHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEE
Confidence 9999876533 444444 2 4567775211011222 234566778654
No 218
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=89.82 E-value=1.2 Score=35.67 Aligned_cols=42 Identities=24% Similarity=0.290 Sum_probs=34.4
Q ss_pred eEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHH
Q 012750 254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHK 298 (457)
Q Consensus 254 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~ 298 (457)
+|+|+|.|.+|-.+|..|.+.|.+|+ +.+....+. ..+|.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vt-li~~~~~~~--~~~~~~~ 42 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVT-LIERSDRLL--PGFDPDA 42 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEE-EEESSSSSS--TTSSHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEE-EEeccchhh--hhcCHHH
Confidence 68999999999999999999999997 666666555 4566554
No 219
>PRK08605 D-lactate dehydrogenase; Validated
Probab=89.81 E-value=0.42 Score=49.26 Aligned_cols=106 Identities=18% Similarity=0.222 Sum_probs=65.4
Q ss_pred CCCCCCCeEEEEecChHHHHHHHHH-HHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccc
Q 012750 247 GQAIRDLTFVIQGFGNVGSWAARLI-HERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELL 324 (457)
Q Consensus 247 g~~l~g~~vaIqGfGnVG~~~a~~L-~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell 324 (457)
+.++.|++|.|+|+|++|+.+|+.| ...|.+|++ .|.+.. .... . .+ +.. +.++++
T Consensus 141 ~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~-~d~~~~---------~~~~----~--~~------~~~~~l~ell 198 (332)
T PRK08605 141 SRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVA-YDPFPN---------AKAA----T--YV------DYKDTIEEAV 198 (332)
T ss_pred cceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEE-ECCCcc---------HhHH----h--hc------cccCCHHHHH
Confidence 4468999999999999999999999 456889884 343210 0110 0 01 111 233444
Q ss_pred ccccceeeccccCCcccc-----ccccccc-ceEEEecCCCCC-C-HHHHHHHHhCCCe
Q 012750 325 AHECDVLIPCALGGVLKR-----ENAADVK-AKFIIEAANHPT-D-PEADEILSKRGVT 375 (457)
Q Consensus 325 ~~~~DIliPaA~~~~It~-----~na~~i~-akiIvEgAN~p~-t-~~a~~iL~~rGI~ 375 (457)
.+||+++-|...+..|. +....++ -.+++.-+-+.. . .+-.+.|.+..|.
T Consensus 199 -~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~ 256 (332)
T PRK08605 199 -EGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIK 256 (332)
T ss_pred -HhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCee
Confidence 37899998876554443 2233332 358888888874 3 3344677766663
No 220
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=89.80 E-value=0.55 Score=49.25 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=31.6
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
+++.+|+|+|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 678899999999999999999999998555588765
No 221
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=89.79 E-value=0.63 Score=44.72 Aligned_cols=53 Identities=26% Similarity=0.300 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHH--HHCCCEEEEEECCC
Q 012750 232 GRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLI--HERGGKVIAVSDIT 285 (457)
Q Consensus 232 g~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L--~~~GakVVaVsD~~ 285 (457)
||=|...++.+-+.+|.. ...+++|.|.|++|..+++.+ .+.|++++|+.|.+
T Consensus 65 gy~v~~l~~~~~~~l~~~-~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d 119 (213)
T PRK05472 65 GYNVEELLEFIEKILGLD-RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVD 119 (213)
T ss_pred CeeHHHHHHHHHHHhCCC-CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECC
Confidence 455555555554456666 567999999999999999864 35689999999874
No 222
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=89.74 E-value=0.55 Score=48.51 Aligned_cols=35 Identities=20% Similarity=0.400 Sum_probs=30.8
Q ss_pred CCCeEEEEecChHHHHHHHHHHHC-CCEEEEEECCC
Q 012750 251 RDLTFVIQGFGNVGSWAARLIHER-GGKVIAVSDIT 285 (457)
Q Consensus 251 ~g~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~ 285 (457)
+..||+|.|+|++|+..++.+.+. +..++||.|.+
T Consensus 2 ~kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~ 37 (324)
T TIGR01921 2 SKIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRR 37 (324)
T ss_pred CCcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCC
Confidence 347999999999999999988764 89999999986
No 223
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=89.73 E-value=3 Score=43.18 Aligned_cols=33 Identities=15% Similarity=0.411 Sum_probs=28.9
Q ss_pred CeEEEEecChHHHHHHHHHHH-CCCEEEEEECCC
Q 012750 253 LTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDIT 285 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~ 285 (457)
.||+|.|||.+|+.+++.+.+ .+.+|+||+|.+
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~ 35 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTK 35 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 489999999999999998875 578999999864
No 224
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=89.59 E-value=3.2 Score=43.30 Aligned_cols=32 Identities=34% Similarity=0.340 Sum_probs=27.7
Q ss_pred CeEEEEecChHHHHHHHHHHHC-CCEEEEEECC
Q 012750 253 LTFVIQGFGNVGSWAARLIHER-GGKVIAVSDI 284 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~ 284 (457)
.||+|=|||-+|+.+.|.+.+. +..||+|-|.
T Consensus 3 ~kv~INGfGRIGR~v~R~~~~~~~~~ivaiNd~ 35 (342)
T PTZ00353 3 ITVGINGFGPVGKAVLFASLTDPLVTVVAVNDA 35 (342)
T ss_pred eEEEEECCChHHHHHHHHHHhcCCcEEEEecCC
Confidence 5899999999999999987654 6899999874
No 225
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=89.55 E-value=4.6 Score=43.73 Aligned_cols=37 Identities=35% Similarity=0.563 Sum_probs=31.7
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHC-----CCEEEEEECCCC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHER-----GGKVIAVSDITG 286 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~-----GakVVaVsD~~G 286 (457)
.+.++|+|=|||-+|+.++|.+.++ +.+||||-+..+
T Consensus 125 ~~~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~n 166 (477)
T PRK08289 125 IEPRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKG 166 (477)
T ss_pred CCCceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCC
Confidence 5678999999999999999998764 579999977654
No 226
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=89.53 E-value=0.66 Score=47.41 Aligned_cols=172 Identities=20% Similarity=0.204 Sum_probs=94.2
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccc
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECD 329 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~D 329 (457)
....+|--+|.|++|++.+..|...|++|+ |-|. +.+...++.+.+.++.+- |.|+- .+||
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVt-V~dr----------~~~k~~~f~~~Ga~v~~s-------PaeVa-e~sD 93 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVT-VYDR----------TKDKCKEFQEAGARVANS-------PAEVA-EDSD 93 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcCCEEE-EEeC----------cHHHHHHHHHhchhhhCC-------HHHHH-hhcC
Confidence 456789999999999999999999999998 6664 467777777776666553 33333 3677
Q ss_pred eeecccc-----CCcccccccccc-----cceEEEecCCC-C-CCHHHHHHHHhCCCeEecccccccCCcee--------
Q 012750 330 VLIPCAL-----GGVLKRENAADV-----KAKFIIEAANH-P-TDPEADEILSKRGVTILPDIYANSGGVTV-------- 389 (457)
Q Consensus 330 IliPaA~-----~~~It~~na~~i-----~akiIvEgAN~-p-~t~~a~~iL~~rGI~viPD~laNaGGVi~-------- 389 (457)
++|-|-. ..++...+- -+ ..+..++..-. | ++.|-.+.+..+|-.++---+ +|||--
T Consensus 94 vvitmv~~~~~v~~v~~g~~G-vl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPV--SGg~~~A~~G~Lti 170 (327)
T KOG0409|consen 94 VVITMVPNPKDVKDVLLGKSG-VLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPV--SGGVKGAEEGTLTI 170 (327)
T ss_pred EEEEEcCChHhhHHHhcCCCc-ceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccc--cCCchhhhcCeEEE
Confidence 7765521 111112111 01 11222333221 2 234445566777776654332 344421
Q ss_pred ------hhHHHhhhcccC-------------CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 012750 390 ------SYFEWVQNIQGF-------------MWEEDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLGV 443 (457)
Q Consensus 390 ------S~~E~~qn~~~~-------------~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~ 443 (457)
+-|||.+-.-.. .-.-.-+++.+-...--.+.+-+..+++.|++.++-+.++-.
T Consensus 171 magGde~~~~~~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~ 243 (327)
T KOG0409|consen 171 MAGGDEALFEAASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNT 243 (327)
T ss_pred EecCcHHHHHHHHHHHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 344554332100 000112234443433445556667777888888776665543
No 227
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=89.38 E-value=1.4 Score=49.35 Aligned_cols=111 Identities=23% Similarity=0.274 Sum_probs=67.2
Q ss_pred CCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccc----cc
Q 012750 252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA----HE 327 (457)
Q Consensus 252 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~----~~ 327 (457)
..+|+|.|||.+|+.+++.|.+.|.+++ +-|. |.+.+.+.++. |.-.-|-++ +..++|+ .+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vv-vID~----------d~~~v~~~~~~-g~~v~~GDa---t~~~~L~~agi~~ 464 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMT-VLDH----------DPDHIETLRKF-GMKVFYGDA---TRMDLLESAGAAK 464 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEE-EEEC----------CHHHHHHHHhc-CCeEEEEeC---CCHHHHHhcCCCc
Confidence 3689999999999999999999999988 4465 34555444332 211111111 2233442 27
Q ss_pred cceeeccccCCcccc---cccccc--cceEEEecCCCCCCHHHHHHHHhCCCeEe-cccc
Q 012750 328 CDVLIPCALGGVLKR---ENAADV--KAKFIIEAANHPTDPEADEILSKRGVTIL-PDIY 381 (457)
Q Consensus 328 ~DIliPaA~~~~It~---~na~~i--~akiIvEgAN~p~t~~a~~iL~~rGI~vi-PD~l 381 (457)
+|.+|-|.-.+..|. .++.+. +.++|+=. .+++....|++.|+-.+ |...
T Consensus 465 A~~vvv~~~d~~~n~~i~~~ar~~~p~~~iiaRa----~d~~~~~~L~~~Gad~v~~e~~ 520 (621)
T PRK03562 465 AEVLINAIDDPQTSLQLVELVKEHFPHLQIIARA----RDVDHYIRLRQAGVEKPERETF 520 (621)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEE----CCHHHHHHHHHCCCCEEehhhH
Confidence 888887754333222 223332 45677743 34567788999999654 5443
No 228
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=89.25 E-value=5.1 Score=41.63 Aligned_cols=32 Identities=25% Similarity=0.449 Sum_probs=27.4
Q ss_pred CeEEEEecChHHHHHHHHHHHC-CCEEEEEECC
Q 012750 253 LTFVIQGFGNVGSWAARLIHER-GGKVIAVSDI 284 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~ 284 (457)
.+|+|.|||.+|+.+.+.+.+. ..+|+++-|.
T Consensus 3 ikigInG~GRiGr~v~r~~~~~~~~~ivaind~ 35 (334)
T PRK08955 3 IKVGINGFGRIGRLALRAAWDWPELEFVQINDP 35 (334)
T ss_pred eEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 5899999999999999987754 5899988764
No 229
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.18 E-value=0.63 Score=49.86 Aligned_cols=41 Identities=29% Similarity=0.336 Sum_probs=35.0
Q ss_pred HHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 244 AEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 244 ~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
.+++.++++++|+|.|.|..|..+|+.|.++|.+|+ ++|.+
T Consensus 8 ~~~~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~-~~d~~ 48 (480)
T PRK01438 8 TSWHSDWQGLRVVVAGLGVSGFAAADALLELGARVT-VVDDG 48 (480)
T ss_pred hhcccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 345667889999999999999999999999999977 66653
No 230
>PLN02688 pyrroline-5-carboxylate reductase
Probab=89.11 E-value=1.2 Score=43.80 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=25.8
Q ss_pred CeEEEEecChHHHHHHHHHHHCCC----EEEEEE-CC
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGG----KVIAVS-DI 284 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~Ga----kVVaVs-D~ 284 (457)
++|.++|+|++|+.+++-|.+.|. +|+ ++ |.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~-v~~~r 36 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRIS-TADDS 36 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEE-EEeCC
Confidence 479999999999999999999887 666 44 44
No 231
>PLN02858 fructose-bisphosphate aldolase
Probab=88.76 E-value=0.99 Score=54.96 Aligned_cols=170 Identities=17% Similarity=0.156 Sum_probs=93.1
Q ss_pred CCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccccccce
Q 012750 252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECDV 330 (457)
Q Consensus 252 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~DI 330 (457)
.++|.++|+|++|..+|+-|...|.+|+ +.|.+ .+.+.+.... + +... ++.++. .+||+
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~-v~dr~----------~~~~~~l~~~-G-------a~~~~s~~e~~-~~aDv 383 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVC-GYDVY----------KPTLVRFENA-G-------GLAGNSPAEVA-KDVDV 383 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEE-EEeCC----------HHHHHHHHHc-C-------CeecCCHHHHH-hcCCE
Confidence 3789999999999999999999999886 55542 3344333332 1 1111 233333 47999
Q ss_pred eeccccC-----Cccccc--ccccc-cceEEEecCCC-C-CCHHHHHHHHh--CCCeEecccc------cccCCc--eeh
Q 012750 331 LIPCALG-----GVLKRE--NAADV-KAKFIIEAANH-P-TDPEADEILSK--RGVTILPDIY------ANSGGV--TVS 390 (457)
Q Consensus 331 liPaA~~-----~~It~~--na~~i-~akiIvEgAN~-p-~t~~a~~iL~~--rGI~viPD~l------aNaGGV--i~S 390 (457)
++-|-.. .++..+ -++.+ .-++|++-... | .+.+..+.+.+ +|+.++=--+ +..|-. +++
T Consensus 384 Vi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvg 463 (1378)
T PLN02858 384 LVIMVANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMAS 463 (1378)
T ss_pred EEEecCChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEE
Confidence 9877542 222111 12222 23566665543 3 34556677888 9998763322 122221 111
Q ss_pred ----hHHHhhhc----c-cCCC-C----HH----HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 012750 391 ----YFEWVQNI----Q-GFMW-E----ED----KVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTL 441 (457)
Q Consensus 391 ----~~E~~qn~----~-~~~w-~----~e----~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~ 441 (457)
.|+.++.+ . ..++ - .- -++..+.......+.+.+..+++.|+++.+...++
T Consensus 464 G~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl 532 (1378)
T PLN02858 464 GTDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDII 532 (1378)
T ss_pred CCHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 23332221 1 1111 1 11 22333444445566778888899999988766543
No 232
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=88.50 E-value=0.43 Score=52.07 Aligned_cols=32 Identities=25% Similarity=0.398 Sum_probs=28.6
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
++|+|+|.|.+|+..|..|...|..|+ +.|.+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~-l~D~~ 39 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVL-LYDAR 39 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEE-EEeCC
Confidence 579999999999999999999999998 66764
No 233
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=88.38 E-value=1.1 Score=49.13 Aligned_cols=105 Identities=14% Similarity=0.198 Sum_probs=59.6
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccc----cccc
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL----AHEC 328 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell----~~~~ 328 (457)
.+++|.|+|++|+.+++.|.++|..++ +-|. |.+.+.+.++..-.+ -+-++ ++.+.| -.++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vv-vId~----------d~~~~~~~~~~g~~~-i~GD~---~~~~~L~~a~i~~a 482 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLV-VIET----------SRTRVDELRERGIRA-VLGNA---ANEEIMQLAHLDCA 482 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEE-EEEC----------CHHHHHHHHHCCCeE-EEcCC---CCHHHHHhcCcccc
Confidence 478999999999999999999999988 4454 244554444321111 01011 222333 1277
Q ss_pred ceeeccccCCcccc---ccccc--ccceEEEecCCCCCCHHHHHHHHhCCCeE
Q 012750 329 DVLIPCALGGVLKR---ENAAD--VKAKFIIEAANHPTDPEADEILSKRGVTI 376 (457)
Q Consensus 329 DIliPaA~~~~It~---~na~~--i~akiIvEgAN~p~t~~a~~iL~~rGI~v 376 (457)
|.++=+...+.-+. ..+.+ -.+++|+=. | +++..+.|++-|+-+
T Consensus 483 ~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~-~---~~~~~~~l~~~Gad~ 531 (558)
T PRK10669 483 RWLLLTIPNGYEAGEIVASAREKRPDIEIIARA-H---YDDEVAYITERGANQ 531 (558)
T ss_pred CEEEEEcCChHHHHHHHHHHHHHCCCCeEEEEE-C---CHHHHHHHHHcCCCE
Confidence 86665533321110 01111 245777743 2 567788899888643
No 234
>PLN02712 arogenate dehydrogenase
Probab=88.34 E-value=0.8 Score=51.70 Aligned_cols=39 Identities=28% Similarity=0.419 Sum_probs=33.4
Q ss_pred HhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750 245 EHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 245 ~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
.++.++++++|.|+|+|++|+.+|+.|.+.|.+|++ .|.
T Consensus 362 ~~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~-~dr 400 (667)
T PLN02712 362 GCVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLA-YSR 400 (667)
T ss_pred hccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEE-EEC
Confidence 346678999999999999999999999999999884 444
No 235
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=88.24 E-value=0.71 Score=44.24 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=31.2
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
|+..+|.|+|.|-+|+.+|..|.+.|..=+.+.|.+
T Consensus 19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 788999999999999999999999998534377765
No 236
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=88.23 E-value=0.42 Score=52.12 Aligned_cols=32 Identities=28% Similarity=0.478 Sum_probs=28.4
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
++|+|+|.|.+|+.+|..|...|..|+ +.|.+
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~-l~d~~ 37 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVL-LYDIR 37 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEE-EEeCC
Confidence 579999999999999999999999998 66653
No 237
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.18 E-value=1.4 Score=45.07 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=42.6
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHH----CCCEEEEEECC
Q 012750 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHE----RGGKVIAVSDI 284 (457)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~----~GakVVaVsD~ 284 (457)
.++|..|+. +++++++.+++|++|+|+| ...||+-++.+|.+ +++.|. ++.+
T Consensus 139 ~PcTp~ail----~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt-~~hs 195 (295)
T PRK14174 139 VSCTPYGIL----ELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVT-ICHS 195 (295)
T ss_pred CCCCHHHHH----HHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEE-EEeC
Confidence 468999884 4566779999999999999 57799999999987 688876 6655
No 238
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=88.13 E-value=1.3 Score=45.35 Aligned_cols=109 Identities=20% Similarity=0.237 Sum_probs=65.3
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCC
Q 012750 230 ATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGS 308 (457)
Q Consensus 230 aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~ 308 (457)
+||.-.++++. +.|..-.|.+|+|.+ .|.||+.+.++-.-+|++|||++-+. ++..-.+++-|-
T Consensus 133 mpG~TAY~gLl----~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~-----------eK~~~l~~~lGf 197 (340)
T COG2130 133 MPGLTAYFGLL----DIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGA-----------EKCDFLTEELGF 197 (340)
T ss_pred CchHHHHHHHH----HhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecCCH-----------HHHHHHHHhcCC
Confidence 45544445543 446667899999998 59999888776666899999998762 222211221111
Q ss_pred --cccCCCCeecCCCcccc----cccceeeccccCCcccccccc--cccceEEEecC
Q 012750 309 --LKDFDGGDSMEPSELLA----HECDVLIPCALGGVLKRENAA--DVKAKFIIEAA 357 (457)
Q Consensus 309 --~~~~~~~~~i~~~ell~----~~~DIliPaA~~~~It~~na~--~i~akiIvEgA 357 (457)
.-+|... +..+-|. --.||++++-.+++.+. -.+ +.+||+++.|+
T Consensus 198 D~~idyk~~---d~~~~L~~a~P~GIDvyfeNVGg~v~DA-v~~~ln~~aRi~~CG~ 250 (340)
T COG2130 198 DAGIDYKAE---DFAQALKEACPKGIDVYFENVGGEVLDA-VLPLLNLFARIPVCGA 250 (340)
T ss_pred ceeeecCcc---cHHHHHHHHCCCCeEEEEEcCCchHHHH-HHHhhccccceeeeee
Confidence 1122111 1122232 25699999966555443 223 35899999987
No 239
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=88.12 E-value=0.58 Score=48.64 Aligned_cols=33 Identities=30% Similarity=0.540 Sum_probs=28.8
Q ss_pred CCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750 251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 251 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
...+|+|+||||+|+..|+.|.+.|..++ ++|.
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~aGh~li-~hsR 83 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDAGHGLI-CHSR 83 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhcCceeE-ecCc
Confidence 45789999999999999999999999998 4554
No 240
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=88.10 E-value=1.8 Score=43.11 Aligned_cols=70 Identities=19% Similarity=0.237 Sum_probs=43.9
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccceee
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDVLI 332 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DIli 332 (457)
++|.|+|.|.+|+.++..|.++|.+|++ .|.+ .+.+.+..+ .+.+... .++.+. -.+||++|
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~-~d~~----------~~~~~~a~~-~g~~~~~-----~~~~~~-~~~aDlVi 62 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYG-VSRR----------ESTCERAIE-RGLVDEA-----STDLSL-LKDCDLVI 62 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEE-EECC----------HHHHHHHHH-CCCcccc-----cCCHhH-hcCCCEEE
Confidence 3799999999999999999999998874 4442 233333222 2322211 112222 24899999
Q ss_pred ccccCCcc
Q 012750 333 PCALGGVL 340 (457)
Q Consensus 333 PaA~~~~I 340 (457)
-|.....+
T Consensus 63 lavp~~~~ 70 (279)
T PRK07417 63 LALPIGLL 70 (279)
T ss_pred EcCCHHHH
Confidence 99765443
No 241
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=88.06 E-value=0.43 Score=49.43 Aligned_cols=35 Identities=31% Similarity=0.395 Sum_probs=32.5
Q ss_pred hCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEE
Q 012750 246 HGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIA 280 (457)
Q Consensus 246 ~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVa 280 (457)
+|.++.|+|++|.|||.+|+.+|+.+...|.++|+
T Consensus 140 ~G~el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~ 174 (406)
T KOG0068|consen 140 LGWELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIG 174 (406)
T ss_pred eeeEEeccEEEEeecccchHHHHHHHHhcCceEEe
Confidence 46789999999999999999999999999999985
No 242
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=87.83 E-value=4.5 Score=43.52 Aligned_cols=32 Identities=38% Similarity=0.537 Sum_probs=27.6
Q ss_pred CeEEEEecChHHHHHHHHHHHC---CCEEEEEECC
Q 012750 253 LTFVIQGFGNVGSWAARLIHER---GGKVIAVSDI 284 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~---GakVVaVsD~ 284 (457)
.||+|=|||-+|+.+.|.+.+. ..+||+|-|.
T Consensus 76 ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~ 110 (442)
T PLN02237 76 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 110 (442)
T ss_pred EEEEEECCChHHHHHHHHHHHccCCCeEEEEECCC
Confidence 6899999999999999987643 5899999774
No 243
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.82 E-value=0.88 Score=48.11 Aligned_cols=36 Identities=28% Similarity=0.455 Sum_probs=32.0
Q ss_pred CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 249 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
+++|+++.|.|.|..|..+|++|.+.|++|+ ++|.+
T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~-~~d~~ 37 (447)
T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVT-VNDGK 37 (447)
T ss_pred CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEE-EEcCC
Confidence 3678999999999999999999999999988 67764
No 244
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=87.78 E-value=1.3 Score=44.88 Aligned_cols=53 Identities=28% Similarity=0.316 Sum_probs=45.0
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEECCC
Q 012750 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGN-VGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~~ 285 (457)
.+.|-+|++.. +++++.++.|++++|+|-+| ||+-++.+|...++.|. |+.+.
T Consensus 136 ~PCTp~gi~~l----l~~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVt-vcHs~ 189 (283)
T COG0190 136 LPCTPAGIMTL----LEEYGIDLRGKNVVVVGRSNIVGKPLALLLLNANATVT-VCHSR 189 (283)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEE-EEcCC
Confidence 47899888654 56679999999999999655 89999999999999987 88774
No 245
>PRK06046 alanine dehydrogenase; Validated
Probab=87.64 E-value=4.2 Score=41.69 Aligned_cols=115 Identities=18% Similarity=0.127 Sum_probs=68.0
Q ss_pred CCCeEEEEecChHHHHHHHHHH-HCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccccccc
Q 012750 251 RDLTFVIQGFGNVGSWAARLIH-ERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHEC 328 (457)
Q Consensus 251 ~g~~vaIqGfGnVG~~~a~~L~-~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~ 328 (457)
.-.++.|+|.|..|++.++.|. -.+.+.|.|.|.+ .+...+..++-....++ ..... +.+++++ +
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~----------~~~~~~~~~~~~~~~~~-~v~~~~~~~~~l~--a 194 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRT----------KSSAEKFVERMSSVVGC-DVTVAEDIEEACD--C 194 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCC----------HHHHHHHHHHHHhhcCc-eEEEeCCHHHHhh--C
Confidence 4568999999999999998776 3578888888774 23333333321100000 01112 2345554 9
Q ss_pred ceeeccccCC--cccccccccccceEEEecCCCCCCHHHHHHHHhCCCeEeccc
Q 012750 329 DVLIPCALGG--VLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDI 380 (457)
Q Consensus 329 DIliPaA~~~--~It~~na~~i~akiIvEgAN~p~t~~a~~iL~~rGI~viPD~ 380 (457)
||++=|+... ++..+.+ +=.+-+..=|++-|-..|.+..+-++.- ++-|-
T Consensus 195 DiVv~aTps~~P~~~~~~l-~~g~hV~~iGs~~p~~~El~~~~~~~a~-vvvD~ 246 (326)
T PRK06046 195 DILVTTTPSRKPVVKAEWI-KEGTHINAIGADAPGKQELDPEILLRAK-VVVDD 246 (326)
T ss_pred CEEEEecCCCCcEecHHHc-CCCCEEEecCCCCCccccCCHHHHhCCc-EEECC
Confidence 9999887542 2333333 2255678889998866666655555553 33354
No 246
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=87.56 E-value=0.74 Score=47.68 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=32.2
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
|++++|+|+|.|.+|+.+|+.|...|..-+.+.|.+
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 788999999999999999999999998656688875
No 247
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.56 E-value=0.77 Score=49.39 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=32.1
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
++|++|+|.|+|.-|..++++|.+.|++|+ ++|.+
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~-~~d~~ 40 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQA-LTLFC 40 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEE-EEcCC
Confidence 568899999999999999999999999988 78864
No 248
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=87.51 E-value=0.5 Score=46.91 Aligned_cols=35 Identities=29% Similarity=0.594 Sum_probs=29.4
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
|+..+|+|.|.|-||+|+++.|.+.|..=+.+-|-
T Consensus 28 l~~~~V~VvGiGGVGSw~veALaRsGig~itlID~ 62 (263)
T COG1179 28 LKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDM 62 (263)
T ss_pred HhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEec
Confidence 67889999999999999999999999744435554
No 249
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=87.26 E-value=0.6 Score=41.27 Aligned_cols=34 Identities=29% Similarity=0.338 Sum_probs=28.6
Q ss_pred CCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 252 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
.+||+|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 5799999999999999999999998555577764
No 250
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.19 E-value=0.5 Score=47.57 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=27.3
Q ss_pred eEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750 254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 254 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
+|+|+|.|.+|+..|..|+..|..|+ +.|.
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~-l~d~ 36 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVL-VFET 36 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEE-EEEC
Confidence 89999999999999999999999988 5565
No 251
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=87.13 E-value=0.57 Score=47.90 Aligned_cols=54 Identities=20% Similarity=0.329 Sum_probs=42.7
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCee-eC---CCCCCHHHHHHhHh
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAV-KN---ADGIDIHKLLAHKD 304 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i-yn---p~GLDi~~L~~~~~ 304 (457)
|+|++|+|+|+|+=|.+=|.-|.+.|..|+ |.=..|+. +. .+|+++..+.+..+
T Consensus 16 LkgK~iaIIGYGsQG~ahalNLRDSGlnVi-iGlr~g~~s~~kA~~dGf~V~~v~ea~k 73 (338)
T COG0059 16 LKGKKVAIIGYGSQGHAQALNLRDSGLNVI-IGLRKGSSSWKKAKEDGFKVYTVEEAAK 73 (338)
T ss_pred hcCCeEEEEecChHHHHHHhhhhhcCCcEE-EEecCCchhHHHHHhcCCEeecHHHHhh
Confidence 899999999999999999999999999877 76666654 33 57776666555444
No 252
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=86.94 E-value=0.85 Score=45.87 Aligned_cols=36 Identities=33% Similarity=0.614 Sum_probs=30.6
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
|++.+|+|+|.|.||+++|+.|.+.|..=+.+.|.+
T Consensus 28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 788999999999999999999999995434477764
No 253
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.88 E-value=0.67 Score=46.39 Aligned_cols=31 Identities=29% Similarity=0.267 Sum_probs=27.2
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
++|+|+|.|.+|+.+|..|.+.|.+|+ +.|.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~-l~d~ 34 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVT-IYDI 34 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEE-EEeC
Confidence 479999999999999999999999987 4454
No 254
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=86.71 E-value=0.93 Score=44.00 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=31.7
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
|+..+|+|.|.|.+|+.+|+.|...|..-+.+.|.+
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 678899999999999999999999998666677764
No 255
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=86.68 E-value=1.1 Score=46.88 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=31.7
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
+++.+|+|+|.|-+|+.+++.|...|..=+.+.|.+
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 789999999999999999999999998655577764
No 256
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=86.66 E-value=1.8 Score=43.27 Aligned_cols=115 Identities=15% Similarity=0.202 Sum_probs=65.0
Q ss_pred CeEEEEecChHHHHHHHHHHHCC----CEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccccc
Q 012750 253 LTFVIQGFGNVGSWAARLIHERG----GKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHE 327 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~G----akVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~ 327 (457)
.++.|+|+|++|+.+++.|.+.| .+|+.+..+. .+.+...... +++.... +..+++ .+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~----------~~~~~~l~~~------~~~~~~~~~~~e~~-~~ 64 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSK----------NEHFNQLYDK------YPTVELADNEAEIF-TK 64 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCc----------HHHHHHHHHH------cCCeEEeCCHHHHH-hh
Confidence 37999999999999999999888 5676443321 1222222221 2111211 222333 48
Q ss_pred cceeeccccCCcccc---ccccccc-ceEEEecCCCCCCHHHHHHHHh-CCCeEeccccccc
Q 012750 328 CDVLIPCALGGVLKR---ENAADVK-AKFIIEAANHPTDPEADEILSK-RGVTILPDIYANS 384 (457)
Q Consensus 328 ~DIliPaA~~~~It~---~na~~i~-akiIvEgAN~p~t~~a~~iL~~-rGI~viPD~laNa 384 (457)
||++|-|.....+.+ +-.+.++ -++|+--+|+-...+-.+.|.. +=|.+.|-.-+-.
T Consensus 65 aDvVilavpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~~~vvR~MPN~~~~~ 126 (277)
T PRK06928 65 CDHSFICVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPGLQVSRLIPSLTSAV 126 (277)
T ss_pred CCEEEEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCEEEEeCccHHHH
Confidence 999998865443221 1112232 2477878887655566666643 3347788655443
No 257
>PRK04148 hypothetical protein; Provisional
Probab=86.56 E-value=1.5 Score=39.78 Aligned_cols=34 Identities=29% Similarity=0.288 Sum_probs=29.2
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
.++++++++|.| -|..+|..|.+.|..|+| .|.+
T Consensus 15 ~~~~kileIG~G-fG~~vA~~L~~~G~~Via-IDi~ 48 (134)
T PRK04148 15 GKNKKIVELGIG-FYFKVAKKLKESGFDVIV-IDIN 48 (134)
T ss_pred ccCCEEEEEEec-CCHHHHHHHHHCCCEEEE-EECC
Confidence 467899999999 888899999999999995 5653
No 258
>PLN02858 fructose-bisphosphate aldolase
Probab=86.56 E-value=2.2 Score=52.08 Aligned_cols=172 Identities=13% Similarity=0.062 Sum_probs=98.3
Q ss_pred CCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccccccc
Q 012750 251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHECD 329 (457)
Q Consensus 251 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~D 329 (457)
...+|.++|+|++|..+|+-|.+.|+.|. |.|.+ .+...++.+.+ +... ++.++. ..||
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~-v~dr~----------~~~~~~l~~~G--------a~~~~s~~e~a-~~ad 62 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQ-AFEIS----------TPLMEKFCELG--------GHRCDSPAEAA-KDAA 62 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEE-EEcCC----------HHHHHHHHHcC--------CeecCCHHHHH-hcCC
Confidence 35689999999999999999999999987 55553 34444444432 2222 233333 4789
Q ss_pred eeeccccCCcccccc-------cccc-cceEEEecC-CCC-CCHHHHHHHHhCC--CeEecccc------cccCCcee--
Q 012750 330 VLIPCALGGVLKREN-------AADV-KAKFIIEAA-NHP-TDPEADEILSKRG--VTILPDIY------ANSGGVTV-- 389 (457)
Q Consensus 330 IliPaA~~~~It~~n-------a~~i-~akiIvEgA-N~p-~t~~a~~iL~~rG--I~viPD~l------aNaGGVi~-- 389 (457)
++|-|-.......+- +..+ .-++|++-. ..| .+.+..+.+.++| +.++=--+ +.+|-++.
T Consensus 63 vVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imv 142 (1378)
T PLN02858 63 ALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIA 142 (1378)
T ss_pred EEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEE
Confidence 998886443222111 2223 235666655 444 4566777899999 76653222 22233221
Q ss_pred ----hhHHHhhhc----c-cCCC--C-------HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 012750 390 ----SYFEWVQNI----Q-GFMW--E-------EDKVNNELRRYMIRAFHNIKGMCQTHNCNLRMGAFTLG 442 (457)
Q Consensus 390 ----S~~E~~qn~----~-~~~w--~-------~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A 442 (457)
..+|-++.+ . ..++ . -.-++..+...+..++.+-+..+++.|+++.....++.
T Consensus 143 GG~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~ 213 (1378)
T PLN02858 143 SGRSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIIS 213 (1378)
T ss_pred cCCHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 123333221 1 1111 1 12234445555556777888889999999887776654
No 259
>KOG0089 consensus Methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase [Coenzyme transport and metabolism]
Probab=86.39 E-value=0.72 Score=46.43 Aligned_cols=55 Identities=33% Similarity=0.336 Sum_probs=46.2
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCCCe
Q 012750 229 AATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDITGA 287 (457)
Q Consensus 229 ~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~ 287 (457)
++|-.|++. .++++|+.+.|++++|.| .=+||.-+|-+|+..|+.+-.+-|.+-+
T Consensus 147 PcTP~gv~e----iL~r~gI~~~GKn~VVigRS~iVg~P~A~LL~~dG~~~~~~~datVt 202 (309)
T KOG0089|consen 147 PCTPLGVVE----ILERTGIETYGKNAVVIGRSKIVGMPLALLLHNDGAHVYSVDDATVT 202 (309)
T ss_pred CCchHHHHH----HHHHhCCeecCceEEEEcccccccchHHHHHhhcCCcccccCcceEE
Confidence 689999865 456779999999999999 6899999999999999988766665433
No 260
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.30 E-value=1.1 Score=47.39 Aligned_cols=36 Identities=25% Similarity=0.437 Sum_probs=32.0
Q ss_pred CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 249 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
++++++|.|.|.|.+|..+|+.|.+.|++|+ ++|.+
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~-~~d~~ 37 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVI-LTDEK 37 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 4688999999999999999999999999988 56654
No 261
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=86.09 E-value=0.82 Score=46.31 Aligned_cols=43 Identities=33% Similarity=0.509 Sum_probs=34.6
Q ss_pred HHHHhCC-----CCCCCeEEEEecChHHHHHHHHHHHCCC-EEEEEECCC
Q 012750 242 LLAEHGQ-----AIRDLTFVIQGFGNVGSWAARLIHERGG-KVIAVSDIT 285 (457)
Q Consensus 242 ~l~~~g~-----~l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~~ 285 (457)
+|+++|+ .++.+.|+|+|.|.||+-+|++|.+.|. |++ ..|.+
T Consensus 67 ALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLl-LfDYD 115 (422)
T KOG2336|consen 67 ALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLL-LFDYD 115 (422)
T ss_pred HHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEE-Eeecc
Confidence 4556675 2788999999999999999999999996 555 56653
No 262
>PRK05717 oxidoreductase; Validated
Probab=86.01 E-value=1.4 Score=42.38 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=31.1
Q ss_pred CCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750 248 QAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 248 ~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
.+++|++++|.| .|.+|+++|+.|.++|++|+. .|.
T Consensus 6 ~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~-~~~ 42 (255)
T PRK05717 6 PGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVL-ADL 42 (255)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEE-EcC
Confidence 458899999998 599999999999999999984 444
No 263
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=85.73 E-value=1.7 Score=43.46 Aligned_cols=42 Identities=24% Similarity=0.338 Sum_probs=32.4
Q ss_pred CCCeEEEEecChHHHHHHHHHHHC---------CCEEEEEECCCCeeeCCC
Q 012750 251 RDLTFVIQGFGNVGSWAARLIHER---------GGKVIAVSDITGAVKNAD 292 (457)
Q Consensus 251 ~g~~vaIqGfGnVG~~~a~~L~~~---------GakVVaVsD~~G~iynp~ 292 (457)
+...|++.|+|+||+++...+... .+.||+|+|+.+.+...|
T Consensus 2 k~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~~~~skD 52 (364)
T KOG0455|consen 2 KKVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSESLVASKD 52 (364)
T ss_pred ccccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecccccccccc
Confidence 346799999999999998776532 248999999988665433
No 264
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=85.72 E-value=2.5 Score=38.55 Aligned_cols=30 Identities=27% Similarity=0.379 Sum_probs=25.8
Q ss_pred eEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750 254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 254 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
+|+|.|.|+.|..+|..|.++|.+|. +.+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~-l~~~ 30 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVT-LWGR 30 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEE-EETS
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEE-EEec
Confidence 58999999999999999999998876 4433
No 265
>PLN02256 arogenate dehydrogenase
Probab=85.62 E-value=1.9 Score=43.95 Aligned_cols=34 Identities=38% Similarity=0.610 Sum_probs=29.6
Q ss_pred CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 012750 249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 249 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs 282 (457)
+.++++|+|+|+|++|+.+++.|.+.|.+|+++.
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d 66 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATS 66 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEE
Confidence 3577899999999999999999999998888543
No 266
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.42 E-value=1.2 Score=45.96 Aligned_cols=47 Identities=28% Similarity=0.365 Sum_probs=35.5
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC-EEEEE
Q 012750 228 EAATGRGVVYATEALLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGG-KVIAV 281 (457)
Q Consensus 228 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaV 281 (457)
.-.||||.+.-+ -.. -+|.+++|.|.|.||..+++-....|| ||+||
T Consensus 176 GvsTG~GAa~~~------Akv-~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgv 223 (375)
T KOG0022|consen 176 GVSTGYGAAWNT------AKV-EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGV 223 (375)
T ss_pred cccccchhhhhh------ccc-CCCCEEEEEecchHHHHHHHhHHhcCcccEEEE
Confidence 357999874321 112 478999999999999999987777786 78865
No 267
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=85.37 E-value=0.78 Score=47.71 Aligned_cols=112 Identities=28% Similarity=0.376 Sum_probs=59.3
Q ss_pred EEEEecChHHHHHHHHHHHCCC--EEEEEECCCCeeeCCCCCCHHHHHHhHhh--cCCcccCCCCeecC--C-Cccc--c
Q 012750 255 FVIQGFGNVGSWAARLIHERGG--KVIAVSDITGAVKNADGIDIHKLLAHKDK--TGSLKDFDGGDSME--P-SELL--A 325 (457)
Q Consensus 255 vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~~G~iynp~GLDi~~L~~~~~~--~g~~~~~~~~~~i~--~-~ell--~ 325 (457)
|.|.|.|.||+.+++.|.+.+- +|+ |+|.+ .+.+.+..++ ...+. ...++ + +++- -
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~-va~r~----------~~~~~~~~~~~~~~~~~----~~~~d~~~~~~l~~~~ 65 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVT-VADRN----------PEKAERLAEKLLGDRVE----AVQVDVNDPESLAELL 65 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEE-EEESS----------HHHHHHHHT--TTTTEE----EEE--TTTHHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEE-EEECC----------HHHHHHHHhhcccccee----EEEEecCCHHHHHHHH
Confidence 6789999999999999998764 565 77773 5666555543 11111 01122 2 2222 2
Q ss_pred cccceeeccccCCccccccc---ccccceEEEecCCCCCCH---HHHHHHHhCCCeEecccccccC
Q 012750 326 HECDVLIPCALGGVLKRENA---ADVKAKFIIEAANHPTDP---EADEILSKRGVTILPDIYANSG 385 (457)
Q Consensus 326 ~~~DIliPaA~~~~It~~na---~~i~akiIvEgAN~p~t~---~a~~iL~~rGI~viPD~laNaG 385 (457)
.+||++|-|+... .+..-+ -+.++.+|= -+. .++ +-++..+++|+.++++.=.+.|
T Consensus 66 ~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD-~~~--~~~~~~~l~~~a~~~g~~~l~~~G~~PG 127 (386)
T PF03435_consen 66 RGCDVVINCAGPF-FGEPVARACIEAGVHYVD-TSY--VTEEMLALDEEAKEAGVTALPGCGFDPG 127 (386)
T ss_dssp TTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEE-SS---HHHHHHHCHHHHHHTTSEEE-S-BTTTB
T ss_pred hcCCEEEECCccc-hhHHHHHHHHHhCCCeec-cch--hHHHHHHHHHHHHhhCCEEEeCcccccc
Confidence 3889999998654 332222 223555554 111 122 2235667889999888765554
No 268
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=85.00 E-value=1.4 Score=44.70 Aligned_cols=34 Identities=32% Similarity=0.280 Sum_probs=29.7
Q ss_pred CCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 251 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
.+++|.|.|.|++|+.+|+.|.+.|.+|+ +.|++
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~-~~~r~ 36 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVR-VWSRR 36 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 46789999999999999999999999987 55554
No 269
>PRK08618 ornithine cyclodeaminase; Validated
Probab=84.98 E-value=7.1 Score=39.98 Aligned_cols=116 Identities=16% Similarity=0.140 Sum_probs=67.1
Q ss_pred CCCeEEEEecChHHHHHHHHHH-HCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCC-CCeecCC-Ccccccc
Q 012750 251 RDLTFVIQGFGNVGSWAARLIH-ERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFD-GGDSMEP-SELLAHE 327 (457)
Q Consensus 251 ~g~~vaIqGfGnVG~~~a~~L~-~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~-~~~~i~~-~ell~~~ 327 (457)
..++++|.|.|..|+..+..+. ..+.+-|.|.|.+ .+...++.++-.. .++ .....++ ++.+ .+
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~----------~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~-~~ 192 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT----------FEKAYAFAQEIQS--KFNTEIYVVNSADEAI-EE 192 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC----------HHHHHHHHHHHHH--hcCCcEEEeCCHHHHH-hc
Confidence 5678999999999998887765 4688888788764 2333333221100 011 0112222 3334 48
Q ss_pred cceeeccccCC--cccccccccccceEEEecCCCCCCHHHHHHHHhCCCeEecccc
Q 012750 328 CDVLIPCALGG--VLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIY 381 (457)
Q Consensus 328 ~DIliPaA~~~--~It~~na~~i~akiIvEgAN~p~t~~a~~iL~~rGI~viPD~l 381 (457)
+||++-|+... .++ +-+ +-.+-+++=|++.|--.|.+..+-++.-.++-|..
T Consensus 193 aDiVi~aT~s~~p~i~-~~l-~~G~hV~~iGs~~p~~~E~~~~~~~~a~~vvvD~~ 246 (325)
T PRK08618 193 ADIIVTVTNAKTPVFS-EKL-KKGVHINAVGSFMPDMQELPSEAIARANKVVVESK 246 (325)
T ss_pred CCEEEEccCCCCcchH-Hhc-CCCcEEEecCCCCcccccCCHHHHhhCCEEEECCH
Confidence 99999887543 333 222 33667888899988655555444444434444543
No 270
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.82 E-value=1.3 Score=47.30 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=31.7
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
+.+++|.|.|+|.-|..+|++|.+.|++|. ++|.+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~-~~D~~ 46 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVT-AFDKK 46 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHCCCEEE-EECCC
Confidence 567899999999999999999999999987 78864
No 271
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=84.80 E-value=0.47 Score=51.10 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=27.3
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEE
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVI 279 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVV 279 (457)
|+|++|+|+|+|+.|+.-|.-|...|.+|+
T Consensus 34 LkgKtIaIIGyGSqG~AqAlNLrdSGvnVv 63 (487)
T PRK05225 34 LKGKKIVIVGCGAQGLNQGLNMRDSGLDIS 63 (487)
T ss_pred hCCCEEEEEccCHHHHHHhCCCccccceeE
Confidence 899999999999999988888888898887
No 272
>PRK06153 hypothetical protein; Provisional
Probab=84.78 E-value=0.61 Score=49.27 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=30.7
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
|++.+|+|+|.|-+|+.++..|.+.|.+=+.+.|.+
T Consensus 174 L~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 174 LEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred HhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 688999999999999999999999997444466654
No 273
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=84.54 E-value=1.8 Score=44.25 Aligned_cols=34 Identities=29% Similarity=0.395 Sum_probs=28.2
Q ss_pred CCCeEEEEecChHHHHHHHHHHHCCC--EEEEEECCC
Q 012750 251 RDLTFVIQGFGNVGSWAARLIHERGG--KVIAVSDIT 285 (457)
Q Consensus 251 ~g~~vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~~ 285 (457)
++.+|+|+|.|+||+.+|..|...|. .++ +.|.+
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~-L~D~~ 40 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELV-IIDIN 40 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEE-EEeCC
Confidence 56799999999999999999988886 444 66763
No 274
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=84.19 E-value=3 Score=40.91 Aligned_cols=88 Identities=24% Similarity=0.276 Sum_probs=49.1
Q ss_pred CeEEEEecChHHHHHHHHHHHCC---CEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCccccccc
Q 012750 253 LTFVIQGFGNVGSWAARLIHERG---GKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLAHEC 328 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~G---akVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~~~~ 328 (457)
++++|+|+|++|+.+++.|.+.| ..|. +.|.+ .+.+.+..+..+ + ... ++.+++ .+|
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~-v~~r~----------~~~~~~~~~~~g-~------~~~~~~~~~~-~~a 63 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDII-VSDPS----------PEKRAALAEEYG-V------RAATDNQEAA-QEA 63 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEE-EEcCC----------HHHHHHHHHhcC-C------eecCChHHHH-hcC
Confidence 57999999999999999999888 3443 55542 233333332211 1 111 223343 478
Q ss_pred ceeeccccCCccccccccccc---ceEEEecCCCC
Q 012750 329 DVLIPCALGGVLKRENAADVK---AKFIIEAANHP 360 (457)
Q Consensus 329 DIliPaA~~~~It~~na~~i~---akiIvEgAN~p 360 (457)
|+++-|.....+. +-++.++ -++|+--.|+-
T Consensus 64 dvVil~v~~~~~~-~v~~~l~~~~~~~vvs~~~gi 97 (267)
T PRK11880 64 DVVVLAVKPQVME-EVLSELKGQLDKLVVSIAAGV 97 (267)
T ss_pred CEEEEEcCHHHHH-HHHHHHHhhcCCEEEEecCCC
Confidence 9998886543321 1111111 24667666653
No 275
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=84.03 E-value=36 Score=36.46 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=26.6
Q ss_pred CCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750 251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 251 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
..++|+|+|.|.||..+|..|.+ |..|++ .|.
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~-~~~V~g-~D~ 36 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK-SRQVVG-FDV 36 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc-CCEEEE-EeC
Confidence 34789999999999999999876 689884 554
No 276
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=84.00 E-value=6.4 Score=41.85 Aligned_cols=123 Identities=19% Similarity=0.289 Sum_probs=74.9
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECCC-----------CeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCC
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT-----------GAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPS 321 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~-----------G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ 321 (457)
++++|.|.|=||...+-.|++.|..||+| |.+ --||+|. +++|++.....|++.- .++.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~v-Did~~KV~~ln~g~~PI~Epg---Le~ll~~~~~~gRl~f------Ttd~ 70 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCV-DIDESKVELLNKGISPIYEPG---LEELLKENLASGRLRF------TTDY 70 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEE-eCCHHHHHHHhCCCCCCcCcc---HHHHHHhccccCcEEE------EcCH
Confidence 57999999999999999999999999964 543 2355554 4555544333333321 1111
Q ss_pred cccccccceeeccccCCccccccc----------cc----c-cceEEEecCCCC--CCHHHHHHHHhCC------CeEec
Q 012750 322 ELLAHECDVLIPCALGGVLKRENA----------AD----V-KAKFIIEAANHP--TDPEADEILSKRG------VTILP 378 (457)
Q Consensus 322 ell~~~~DIliPaA~~~~It~~na----------~~----i-~akiIvEgAN~p--~t~~a~~iL~~rG------I~viP 378 (457)
+---.++||.+-|-....-. ++. +. + +.++||-=.--| +|.+-.+.+.+.. |..-|
T Consensus 71 ~~a~~~adv~fIavgTP~~~-dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NP 149 (414)
T COG1004 71 EEAVKDADVVFIAVGTPPDE-DGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNP 149 (414)
T ss_pred HHHHhcCCEEEEEcCCCCCC-CCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecCh
Confidence 11123778877775443322 221 11 2 336777777677 5677777777666 77788
Q ss_pred ccccccCC
Q 012750 379 DIYANSGG 386 (457)
Q Consensus 379 D~laNaGG 386 (457)
.||--.-.
T Consensus 150 EFLREG~A 157 (414)
T COG1004 150 EFLREGSA 157 (414)
T ss_pred HHhcCcch
Confidence 77765433
No 277
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=83.96 E-value=3.1 Score=41.79 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=26.8
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
++|+|+|.|++|+.++..|.+.|..|. +.|.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~-~~~r 32 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVT-LWAR 32 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEE-EEEC
Confidence 479999999999999999999999875 5554
No 278
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=83.78 E-value=1.3 Score=45.53 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=29.5
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCC-EEEEEECCCC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGG-KVIAVSDITG 286 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~~G 286 (457)
++.++|+|+|.|+||+.+|..+...|. . +.+.|.+-
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~-i~LvDi~~ 40 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGD-VVLFDIVK 40 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEeCCC
Confidence 345789999999999999999988885 6 44778754
No 279
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=83.68 E-value=5 Score=35.40 Aligned_cols=68 Identities=15% Similarity=0.166 Sum_probs=54.0
Q ss_pred CCCCCCcchHHHHHHHHHHHHH-HhCCCCCCCeEEEEe--------cChHHHHHHHHHHHCCCEEEEEECCCCeeeC
Q 012750 223 GSLGREAATGRGVVYATEALLA-EHGQAIRDLTFVIQG--------FGNVGSWAARLIHERGGKVIAVSDITGAVKN 290 (457)
Q Consensus 223 Gs~gr~~aTg~Gv~~~~~~~l~-~~g~~l~g~~vaIqG--------fGnVG~~~a~~L~~~GakVVaVsD~~G~iyn 290 (457)
|-.|+...|.|....+.+.+.+ .....++...|-|-| .|.-...+.+-|.+.|.+|+-|-|.+..-+|
T Consensus 36 g~kg~kk~TpyAAq~aa~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~I~DvTpiPhN 112 (114)
T TIGR03628 36 VKADRDESSPYAAMQAAGRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVTPIPHD 112 (114)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEEEEEcCCCCCC
Confidence 3345778899999888888877 334557888899999 6777788889999999999999998765444
No 280
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=83.49 E-value=12 Score=37.67 Aligned_cols=32 Identities=34% Similarity=0.350 Sum_probs=28.6
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCE-EEEE
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGK-VIAV 281 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~Gak-VVaV 281 (457)
..|.+|.|.|.|.||..+++++...|++ |+++
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~ 194 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGV 194 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence 3589999999999999999999999999 8854
No 281
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.45 E-value=1.7 Score=46.81 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=31.2
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
+.+++|.|.|+|..|..++++|.++|++|+ ++|.+
T Consensus 13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~-~~D~~ 47 (473)
T PRK00141 13 ELSGRVLVAGAGVSGRGIAAMLSELGCDVV-VADDN 47 (473)
T ss_pred ccCCeEEEEccCHHHHHHHHHHHHCCCEEE-EECCC
Confidence 678899999999999999999999999776 78863
No 282
>PRK08628 short chain dehydrogenase; Provisional
Probab=83.21 E-value=1.9 Score=41.45 Aligned_cols=35 Identities=14% Similarity=0.310 Sum_probs=31.0
Q ss_pred CCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEE
Q 012750 247 GQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAV 281 (457)
Q Consensus 247 g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaV 281 (457)
+.+++|+++.|.| .|.+|+.+++.|.++|++|+.+
T Consensus 2 ~~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~ 37 (258)
T PRK08628 2 DLNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIF 37 (258)
T ss_pred CCCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEE
Confidence 4578999999998 5899999999999999998854
No 283
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=83.15 E-value=1.6 Score=42.18 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=31.4
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
|+..+|+|+|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 788999999999999999999999998644477764
No 284
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=83.11 E-value=1.9 Score=36.48 Aligned_cols=102 Identities=24% Similarity=0.372 Sum_probs=56.6
Q ss_pred EEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccc----ccccce
Q 012750 255 FVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELL----AHECDV 330 (457)
Q Consensus 255 vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell----~~~~DI 330 (457)
|+|.|+|.+|+.+++.|.+.+.+|+. .|. |.+...+..++. +.-+. +.. +..+.| -.++|.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvv-id~----------d~~~~~~~~~~~--~~~i~-gd~-~~~~~l~~a~i~~a~~ 65 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVV-IDR----------DPERVEELREEG--VEVIY-GDA-TDPEVLERAGIEKADA 65 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEE-EES----------SHHHHHHHHHTT--SEEEE-S-T-TSHHHHHHTTGGCESE
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEE-EEC----------CcHHHHHHHhcc--ccccc-ccc-hhhhHHhhcCccccCE
Confidence 68999999999999999997778884 444 234444444332 11010 111 112222 137787
Q ss_pred eeccccCCccc---ccccccc--cceEEEecCCCCCCHHHHHHHHhCCCe
Q 012750 331 LIPCALGGVLK---RENAADV--KAKFIIEAANHPTDPEADEILSKRGVT 375 (457)
Q Consensus 331 liPaA~~~~It---~~na~~i--~akiIvEgAN~p~t~~a~~iL~~rGI~ 375 (457)
++=++-....| ...+.++ ..++|+.. .+++..+.|.+-|+-
T Consensus 66 vv~~~~~d~~n~~~~~~~r~~~~~~~ii~~~----~~~~~~~~l~~~g~d 111 (116)
T PF02254_consen 66 VVILTDDDEENLLIALLARELNPDIRIIARV----NDPENAELLRQAGAD 111 (116)
T ss_dssp EEEESSSHHHHHHHHHHHHHHTTTSEEEEEE----SSHHHHHHHHHTT-S
T ss_pred EEEccCCHHHHHHHHHHHHHHCCCCeEEEEE----CCHHHHHHHHHCCcC
Confidence 77665433222 2233332 36787754 346667888888874
No 285
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.91 E-value=1.8 Score=46.70 Aligned_cols=36 Identities=22% Similarity=0.395 Sum_probs=32.1
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG 286 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G 286 (457)
+++++|.|.|+|..|..+|++|.+.|++|. ++|.+.
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~-~~D~~~ 40 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLR-VADTRE 40 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEE-EEcCCC
Confidence 568899999999999999999999999987 688753
No 286
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=82.83 E-value=2.2 Score=40.94 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=30.4
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
+++++++.|.|. |.+|+.+++.|.++|++|+ +.++
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~-~~~r 42 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVI-LNGR 42 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEE-EEeC
Confidence 478999999984 9999999999999999988 4454
No 287
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=82.74 E-value=2.3 Score=36.10 Aligned_cols=69 Identities=26% Similarity=0.340 Sum_probs=45.7
Q ss_pred CeEEEEecChHHHHHHHHHHHC--CCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccc-cccc
Q 012750 253 LTFVIQGFGNVGSWAARLIHER--GGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLA-HECD 329 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~--GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~-~~~D 329 (457)
.||+|+|+|+.|+.....+.+. +.++++|+|.+ .+...+..++.+ +..| -+.+++++ .++|
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~----------~~~~~~~~~~~~-~~~~-----~~~~~ll~~~~~D 64 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPD----------PERAEAFAEKYG-IPVY-----TDLEELLADEDVD 64 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSS----------HHHHHHHHHHTT-SEEE-----SSHHHHHHHTTES
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCC----------HHHHHHHHHHhc-ccch-----hHHHHHHHhhcCC
Confidence 3799999999999988766654 67999999874 344444433321 2122 13456675 4789
Q ss_pred eeeccccC
Q 012750 330 VLIPCALG 337 (457)
Q Consensus 330 IliPaA~~ 337 (457)
+++=|+..
T Consensus 65 ~V~I~tp~ 72 (120)
T PF01408_consen 65 AVIIATPP 72 (120)
T ss_dssp EEEEESSG
T ss_pred EEEEecCC
Confidence 98888543
No 288
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.72 E-value=1.9 Score=46.62 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=31.4
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
+.|++|.|.|+|..|..++++|...|++|+ ++|.+
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~-~~D~~ 44 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPT-VCDDD 44 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEE-EEcCC
Confidence 478899999999999999999999999988 58853
No 289
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=82.72 E-value=2.2 Score=40.63 Aligned_cols=34 Identities=15% Similarity=0.277 Sum_probs=30.4
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 012750 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs 282 (457)
+++|+++.|.|. |.+|..+++.|.++|++|+.++
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~ 36 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAG 36 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEc
Confidence 478999999995 8999999999999999998654
No 290
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=82.51 E-value=6 Score=35.79 Aligned_cols=68 Identities=15% Similarity=0.178 Sum_probs=54.3
Q ss_pred CCCCCCcchHHHHHHHHHHHHH-HhCCCCCCCeEEEEe--------cChHHHHHHHHHHHCCCEEEEEECCCCeeeC
Q 012750 223 GSLGREAATGRGVVYATEALLA-EHGQAIRDLTFVIQG--------FGNVGSWAARLIHERGGKVIAVSDITGAVKN 290 (457)
Q Consensus 223 Gs~gr~~aTg~Gv~~~~~~~l~-~~g~~l~g~~vaIqG--------fGnVG~~~a~~L~~~GakVVaVsD~~G~iyn 290 (457)
|-.|+...|-|....+.+.+.+ .....++...|-|-| .|.-...+.+.|...|.+|+-|-|.+..-+|
T Consensus 43 g~kg~kK~TpyAAq~aae~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~I~DvTpiPhN 119 (132)
T PRK09607 43 VKADRDESSPYAAMQAAEKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVTPIPHD 119 (132)
T ss_pred eeCCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEEEEEcCCCCCC
Confidence 3345678899988888888877 334567888899999 6777788889999999999999998765554
No 291
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=82.51 E-value=1.5 Score=41.89 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=31.5
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
++..+|.|.|.|.+|..+++.|...|.+=+.+.|.+
T Consensus 19 L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 678899999999999999999999998766577654
No 292
>PRK06849 hypothetical protein; Provisional
Probab=82.45 E-value=1.8 Score=45.15 Aligned_cols=34 Identities=32% Similarity=0.337 Sum_probs=28.7
Q ss_pred CCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEECCC
Q 012750 251 RDLTFVIQGFGN-VGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 251 ~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~~ 285 (457)
+.++|.|.|.+. +|..+++.|.+.|.+|+++ |+.
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~-d~~ 37 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILA-DSL 37 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE-eCC
Confidence 458999999875 8999999999999999955 553
No 293
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.44 E-value=2.1 Score=45.37 Aligned_cols=35 Identities=17% Similarity=0.394 Sum_probs=31.4
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
+.++++.|.|.|..|..+|++|.++|++|+ ++|.+
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~-~~d~~ 37 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVA-AYDAE 37 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 568899999999999999999999999988 67764
No 294
>PRK12828 short chain dehydrogenase; Provisional
Probab=82.41 E-value=2.2 Score=39.99 Aligned_cols=34 Identities=26% Similarity=0.549 Sum_probs=29.7
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 012750 249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs 282 (457)
.++++++.|.| .|.+|+.+++.|.++|++|+.++
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~ 38 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIG 38 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEe
Confidence 46789999998 59999999999999999988554
No 295
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=82.26 E-value=3.7 Score=41.66 Aligned_cols=31 Identities=19% Similarity=0.179 Sum_probs=26.7
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
++|+|.|.|++|..++..|.+.|..|. +.+.
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~-l~~r 31 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVN-LWGR 31 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEE-EEec
Confidence 369999999999999999999998886 4444
No 296
>PRK07060 short chain dehydrogenase; Provisional
Probab=82.14 E-value=2.5 Score=39.98 Aligned_cols=35 Identities=20% Similarity=0.396 Sum_probs=30.5
Q ss_pred CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 012750 248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 248 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs 282 (457)
.++++++++|.|. |.+|+.+++.|.++|++|+.++
T Consensus 5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~ 40 (245)
T PRK07060 5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAA 40 (245)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEe
Confidence 3578899999996 8999999999999999988543
No 297
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=82.08 E-value=1.5 Score=44.98 Aligned_cols=33 Identities=24% Similarity=0.314 Sum_probs=28.9
Q ss_pred CCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 252 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
-++|+|+|.|.+|+..|..++..|+.|+ +.|.+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~-l~D~~ 35 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVV-LKDIS 35 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceE-EEeCC
Confidence 3689999999999999999988779988 77775
No 298
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.06 E-value=2.1 Score=45.62 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=31.5
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
+++++|.|.|+|.-|..+|++|.++|++|. ++|..
T Consensus 7 ~~~~~i~viG~G~~G~~~a~~l~~~G~~v~-~~D~~ 41 (460)
T PRK01390 7 FAGKTVAVFGLGGSGLATARALVAGGAEVI-AWDDN 41 (460)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEE-EECCC
Confidence 678899999999999999999999999976 78864
No 299
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=82.03 E-value=11 Score=38.69 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=65.9
Q ss_pred CCCeEEEEecChHHHHHHHHHHH-CCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCC-CCeec-CCCcccccc
Q 012750 251 RDLTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFD-GGDSM-EPSELLAHE 327 (457)
Q Consensus 251 ~g~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~-~~~~i-~~~ell~~~ 327 (457)
.-.++.|+|.|+.|++-++.|.. ...+-|.|.|.+ .+...++.++-. .+. ..... ++++.+ .+
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~----------~~~~~~~~~~~~---~~g~~v~~~~~~~eav-~~ 192 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRT----------PSTREKFALRAS---DYEVPVRAATDPREAV-EG 192 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCC----------HHHHHHHHHHHH---hhCCcEEEeCCHHHHh-cc
Confidence 45789999999999987776654 234444466653 344433333211 111 11112 334445 49
Q ss_pred cceeeccccCC--cccccccccccceEEEecCCCCCCHHHHHHHHhCCCeEecccc
Q 012750 328 CDVLIPCALGG--VLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIY 381 (457)
Q Consensus 328 ~DIliPaA~~~--~It~~na~~i~akiIvEgAN~p~t~~a~~iL~~rGI~viPD~l 381 (457)
|||++=|.... .+..+.. +-.+-+.+=|++.|-..|.+..+-++. .++.|..
T Consensus 193 aDiVitaT~s~~P~~~~~~l-~~g~~v~~vGs~~p~~~Eld~~~l~~a-~v~vD~~ 246 (325)
T TIGR02371 193 CDILVTTTPSRKPVVKADWV-SEGTHINAIGADAPGKQELDPEILKNA-KIFVDDL 246 (325)
T ss_pred CCEEEEecCCCCcEecHHHc-CCCCEEEecCCCCcccccCCHHHHhcC-cEEECCH
Confidence 99999887432 2333322 336678888999886666665444444 3445643
No 300
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=82.02 E-value=1.7 Score=41.42 Aligned_cols=36 Identities=25% Similarity=0.335 Sum_probs=31.5
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
++..+|.|+|.|.+|..+++.|...|.+=+.+.|.+
T Consensus 17 L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 17 LRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred HhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 677899999999999999999999998766577764
No 301
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=81.90 E-value=2.4 Score=40.11 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=30.1
Q ss_pred CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEC
Q 012750 250 IRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSD 283 (457)
Q Consensus 250 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD 283 (457)
+++++++|.| .|.+|+++++.|.++|++|+.++.
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r 38 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDI 38 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 6788999998 699999999999999999986643
No 302
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=81.82 E-value=2.6 Score=42.96 Aligned_cols=37 Identities=32% Similarity=0.582 Sum_probs=32.6
Q ss_pred CCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEC
Q 012750 247 GQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSD 283 (457)
Q Consensus 247 g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD 283 (457)
|.+.++++|.|.| .|-+|+++++.|.++|++|+++.+
T Consensus 5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r 42 (353)
T PLN02896 5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLR 42 (353)
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 5568899999999 599999999999999999997654
No 303
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=81.75 E-value=3.3 Score=43.65 Aligned_cols=120 Identities=21% Similarity=0.265 Sum_probs=65.0
Q ss_pred HHHHHHhCC-CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec
Q 012750 240 EALLAEHGQ-AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM 318 (457)
Q Consensus 240 ~~~l~~~g~-~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i 318 (457)
+.+.+.++. .+..++++|.|+|.+|+.+++.|.+.|..|+ +.|. |.+.+.++.++...+.-+. +...
T Consensus 218 ~~~~~~~~~~~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~-vid~----------~~~~~~~~~~~~~~~~~i~-gd~~ 285 (453)
T PRK09496 218 RAVMSEFGRLEKPVKRVMIVGGGNIGYYLAKLLEKEGYSVK-LIER----------DPERAEELAEELPNTLVLH-GDGT 285 (453)
T ss_pred HHHHHHhCccCCCCCEEEEECCCHHHHHHHHHHHhCCCeEE-EEEC----------CHHHHHHHHHHCCCCeEEE-CCCC
Confidence 333333333 3667899999999999999999999999998 4454 2344444443321110000 1111
Q ss_pred CCCccc---ccccceeeccccCCc---cccccccccc-ceEEEecCCCCCCHHHHHHHHhCCCe
Q 012750 319 EPSELL---AHECDVLIPCALGGV---LKRENAADVK-AKFIIEAANHPTDPEADEILSKRGVT 375 (457)
Q Consensus 319 ~~~ell---~~~~DIliPaA~~~~---It~~na~~i~-akiIvEgAN~p~t~~a~~iL~~rGI~ 375 (457)
+.+.+. -.++|.++-+.-... +....+..+. .++|+... +++..++|+..|+-
T Consensus 286 ~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~ii~~~~----~~~~~~~~~~~g~~ 345 (453)
T PRK09496 286 DQELLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAKKVIALVN----RPAYVDLVEGLGID 345 (453)
T ss_pred CHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCCCeEEEEEC----CcchHHHHHhcCCC
Confidence 121121 237788875543221 1111223332 36777543 34456778888873
No 304
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=81.71 E-value=3.8 Score=39.51 Aligned_cols=91 Identities=12% Similarity=0.168 Sum_probs=52.5
Q ss_pred CCCeEEEEecChHHHHHHHHHHHCCC---E-EEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccc
Q 012750 251 RDLTFVIQGFGNVGSWAARLIHERGG---K-VIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLA 325 (457)
Q Consensus 251 ~g~~vaIqGfGnVG~~~a~~L~~~Ga---k-VVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~ 325 (457)
+.++|.|+|.|++|+.++..|.+.|. + |+ +.+.+ +.+.+.+..++.+ .... +.++++
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~-~~~~~---------~~~~~~~~~~~~~-------~~~~~~~~~~~- 64 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEII-VSNRS---------NVEKLDQLQARYN-------VSTTTDWKQHV- 64 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEE-EECCC---------CHHHHHHHHHHcC-------cEEeCChHHHH-
Confidence 46789999999999999998887762 2 43 33321 1334444333221 1111 233444
Q ss_pred cccceeeccccCCccccccccc----ccceEEEecCCCC
Q 012750 326 HECDVLIPCALGGVLKRENAAD----VKAKFIIEAANHP 360 (457)
Q Consensus 326 ~~~DIliPaA~~~~It~~na~~----i~akiIvEgAN~p 360 (457)
.++|+++-|.....+ .+-+.+ ++-++|+--+.+-
T Consensus 65 ~~~DiViiavp~~~~-~~v~~~l~~~~~~~~vis~~~gi 102 (245)
T PRK07634 65 TSVDTIVLAMPPSAH-EELLAELSPLLSNQLVVTVAAGI 102 (245)
T ss_pred hcCCEEEEecCHHHH-HHHHHHHHhhccCCEEEEECCCC
Confidence 379999988765433 222222 3346777777653
No 305
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=81.48 E-value=2.3 Score=40.85 Aligned_cols=97 Identities=18% Similarity=0.197 Sum_probs=54.6
Q ss_pred CeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcC-Ccc--cCCC-CeecCCCcccccc
Q 012750 253 LTFVIQG-FGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTG-SLK--DFDG-GDSMEPSELLAHE 327 (457)
Q Consensus 253 ~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g-~~~--~~~~-~~~i~~~ell~~~ 327 (457)
++|.|+| .|++|+.+++.|.+.|.+|+ +.+.+ .+.+.+..+... .+. ++.. ....+..+.+ .+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~-v~~r~----------~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~-~~ 68 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKII-IGSRD----------LEKAEEAAAKALEELGHGGSDIKVTGADNAEAA-KR 68 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEE-EEEcC----------HHHHHHHHHHHHhhccccCCCceEEEeChHHHH-hc
Confidence 4799997 89999999999999999887 44542 222222222110 000 1110 0111222333 37
Q ss_pred cceeeccccCCcccc---cccccccceEEEecCCCCC
Q 012750 328 CDVLIPCALGGVLKR---ENAADVKAKFIIEAANHPT 361 (457)
Q Consensus 328 ~DIliPaA~~~~It~---~na~~i~akiIvEgAN~p~ 361 (457)
+|++|-|.....+.+ +-.+.++.++|+..+|+..
T Consensus 69 aDvVilavp~~~~~~~l~~l~~~l~~~vvI~~~ngi~ 105 (219)
T TIGR01915 69 ADVVILAVPWDHVLKTLESLRDELSGKLVISPVVPLA 105 (219)
T ss_pred CCEEEEECCHHHHHHHHHHHHHhccCCEEEEeccCce
Confidence 899988865443321 1112344589999999753
No 306
>PRK06138 short chain dehydrogenase; Provisional
Probab=81.37 E-value=2.6 Score=40.11 Aligned_cols=34 Identities=18% Similarity=0.414 Sum_probs=29.9
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 012750 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs 282 (457)
+++++++.|.|. |.+|+.+++.|.++|++|+.++
T Consensus 2 ~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~ 36 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLFAREGARVVVAD 36 (252)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEec
Confidence 468899999985 9999999999999999998654
No 307
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.10 E-value=2.9 Score=39.66 Aligned_cols=34 Identities=18% Similarity=0.360 Sum_probs=29.6
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 012750 249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs 282 (457)
+++++++.|.| .|.+|+.+++.|.++|++|+.++
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~ 36 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTD 36 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 46788999998 59999999999999999988553
No 308
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=80.96 E-value=4.4 Score=41.25 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=29.4
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs 282 (457)
..|.+|+|+|.|.||..++.++...|++|+++.
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~ 203 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLN 203 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEe
Confidence 478899999999999999999999999988654
No 309
>PLN02206 UDP-glucuronate decarboxylase
Probab=80.79 E-value=2.5 Score=45.28 Aligned_cols=37 Identities=35% Similarity=0.483 Sum_probs=32.2
Q ss_pred hCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 012750 246 HGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 246 ~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs 282 (457)
+|..-++++|.|.| .|-||+++++.|.++|.+|+++.
T Consensus 113 ~~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld 150 (442)
T PLN02206 113 LGLKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVD 150 (442)
T ss_pred cccccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEe
Confidence 35566789999999 59999999999999999999764
No 310
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=80.78 E-value=1.6 Score=36.60 Aligned_cols=36 Identities=28% Similarity=0.353 Sum_probs=28.9
Q ss_pred CCCeEEEEecChHHHHHHH-HHHHCCCEEEEEECCCC
Q 012750 251 RDLTFVIQGFGNVGSWAAR-LIHERGGKVIAVSDITG 286 (457)
Q Consensus 251 ~g~~vaIqGfGnVG~~~a~-~L~~~GakVVaVsD~~G 286 (457)
+..+++|+|.|+.|+.++. .+...|.+++++.|.+.
T Consensus 2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~ 38 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDP 38 (96)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECT
T ss_pred CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCC
Confidence 3468999999999998874 34567999999999853
No 311
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.69 E-value=2.5 Score=44.56 Aligned_cols=34 Identities=29% Similarity=0.371 Sum_probs=29.6
Q ss_pred CCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 251 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
+.++|.|.|+|..|..+|++|.++|++|+ ++|.+
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~G~~V~-g~D~~ 35 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQKGVYVI-GVDKS 35 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 45689999999999999999999999877 57754
No 312
>PRK06841 short chain dehydrogenase; Provisional
Probab=80.58 E-value=3 Score=39.87 Aligned_cols=34 Identities=21% Similarity=0.373 Sum_probs=30.1
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 012750 249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs 282 (457)
+++++++.|.| .|.+|+++++.|.++|++|+.++
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~ 46 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLD 46 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 57899999998 59999999999999999998543
No 313
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=80.49 E-value=2.5 Score=42.36 Aligned_cols=31 Identities=29% Similarity=0.293 Sum_probs=27.5
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
++|+|+|.|++|..+|..|...|..|+ +.|.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~-~~d~ 35 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVW-LLDS 35 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEE-EEeC
Confidence 579999999999999999999999887 5565
No 314
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=80.48 E-value=2.4 Score=42.41 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=27.6
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
++|+|+|.|.+|+.+|..|...|..|+ +.|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~-l~d~ 34 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVT-IVDV 34 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEE-EEeC
Confidence 479999999999999999999999987 5565
No 315
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=80.43 E-value=61 Score=34.94 Aligned_cols=171 Identities=16% Similarity=0.180 Sum_probs=96.8
Q ss_pred CCCcceE-EeCCCCCCCHHHHHHHHHHHHHHHhhccCCCCcccC-----CCCCCCHHHHHHHHHHhhhhhC---CCC---
Q 012750 144 YGGAKGG-IGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPA-----PDMGTNAQTMAWILDEYSKFHG---HSP--- 211 (457)
Q Consensus 144 ~GGaKGg-I~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipa-----pDvgT~~~~m~wi~d~~~~~~g---~~~--- 211 (457)
+-|-.-+ +.+.|...+. -+|-.++..+.|....+.. -..|=+-+|-+.+...|..+-. ...
T Consensus 124 L~GK~v~~lF~epSTRTR-------~SFE~A~~~LGg~~i~l~~~~~ss~~kGESi~DTarvLs~y~D~IviR~~~~~~~ 196 (429)
T PRK11891 124 LEGAVLGNLFFEASTRTR-------VSFGAAFCRLGGSVCDTTGFTFSSMAKGESIYDTSRVMSGYVDALVIRHPEQGSV 196 (429)
T ss_pred cCCcEEEEEeccCCchhH-------HHHHHHHHHcCCeEEEeCCccccCCCCCCCHHHHHHHHHHhCCEEEEeCCchhHH
Confidence 5443333 3457765432 2688888888776544422 2344556788888888754321 111
Q ss_pred ---ceecCcccCCCCC-CCCCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEec---ChHHHHHHHHHHHC-CCEEEEEEC
Q 012750 212 ---AVVTGKPIDLGGS-LGREAATGRGVVYATEALLAEHGQAIRDLTFVIQGF---GNVGSWAARLIHER-GGKVIAVSD 283 (457)
Q Consensus 212 ---~~~tGkp~~~GGs-~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf---GnVG~~~a~~L~~~-GakVVaVsD 283 (457)
+-....|+..+|+ .+.-+.-+..=++++++.+...|..++|++|+++|- +||...++..+... |++|+- +
T Consensus 197 ~e~A~~s~vPVINAgdg~~~HPtQaLaDl~Ti~E~~g~~g~~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l-~- 274 (429)
T PRK11891 197 AEFARATNLPVINGGDGPGEHPSQALLDLYTIQREFSRLGKIVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTL-V- 274 (429)
T ss_pred HHHHHhCCCCEEECCCCCCCCcHHHHHHHHHHHHHhCccCCCcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEE-E-
Confidence 1235788888875 333344444444555543211233589999999997 59999999988775 999873 2
Q ss_pred CCCeeeCCCCCC-HHHHHHhHhhcC-CcccCCCCeecCCCcccccccceeeccc
Q 012750 284 ITGAVKNADGID-IHKLLAHKDKTG-SLKDFDGGDSMEPSELLAHECDVLIPCA 335 (457)
Q Consensus 284 ~~G~iynp~GLD-i~~L~~~~~~~g-~~~~~~~~~~i~~~ell~~~~DIliPaA 335 (457)
.|.|++ .+.+.+..++.| ++.-+. +.++.+. ++||++.-.
T Consensus 275 ------~P~~~~~~~~~~~~~~~~G~~v~~~~-----d~~eav~-~ADVVYt~~ 316 (429)
T PRK11891 275 ------SPPTLEMPAYIVEQISRNGHVIEQTD-----DLAAGLR-GADVVYATR 316 (429)
T ss_pred ------CCCccccCHHHHHHHHhcCCeEEEEc-----CHHHHhC-CCCEEEEcC
Confidence 455653 234444333322 221111 2233343 889999854
No 316
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=80.40 E-value=2.5 Score=41.95 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=26.5
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVs 282 (457)
++|+|+|.|++|+.+|..|.+.|..|+.+.
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~ 30 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVA 30 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEE
Confidence 479999999999999999999999987443
No 317
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=80.39 E-value=28 Score=37.20 Aligned_cols=35 Identities=17% Similarity=0.120 Sum_probs=30.8
Q ss_pred CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 012750 248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs 282 (457)
..++|+||+|.|-......++++|.+.|.+++.+.
T Consensus 299 ~~l~gkrv~i~g~~~~~~~la~~L~elGm~v~~~~ 333 (435)
T cd01974 299 QYLHGKKFALYGDPDFLIGLTSFLLELGMEPVHVL 333 (435)
T ss_pred HhcCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEE
Confidence 45799999999988888899999999999998765
No 318
>PRK07774 short chain dehydrogenase; Provisional
Probab=80.09 E-value=3.2 Score=39.47 Aligned_cols=33 Identities=21% Similarity=0.408 Sum_probs=29.3
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEE
Q 012750 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (457)
Q Consensus 249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (457)
+++++++.|.|. |-+|.++++.|.++|++|+.+
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~ 36 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVA 36 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 367899999985 999999999999999999854
No 319
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.05 E-value=2.3 Score=42.48 Aligned_cols=31 Identities=26% Similarity=0.308 Sum_probs=27.5
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
++|+|+|.|.+|+.+|..|.+.|.+|+ +.|.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~-~~d~ 32 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTT-LVDI 32 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEE-EEeC
Confidence 479999999999999999999999988 5555
No 320
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=79.92 E-value=3.8 Score=38.54 Aligned_cols=36 Identities=14% Similarity=0.235 Sum_probs=30.4
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
.++++++.|.|. |.+|+++++.|.+.|++|+.++..
T Consensus 2 ~~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~ 38 (248)
T PRK05557 2 SLEGKVALVTGASRGIGRAIAERLAAQGANVVINYAS 38 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 467889999984 999999999999999999756543
No 321
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=79.88 E-value=2.7 Score=47.84 Aligned_cols=32 Identities=28% Similarity=0.308 Sum_probs=28.7
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
++|+|+|.|.+|..+|..++..|..|+ +.|.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~-l~d~~ 345 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVI-MKDIN 345 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEE-EEeCC
Confidence 579999999999999999999999998 66764
No 322
>PTZ00117 malate dehydrogenase; Provisional
Probab=79.85 E-value=2.2 Score=43.75 Aligned_cols=35 Identities=26% Similarity=0.503 Sum_probs=28.6
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCC-CEEEEEECCC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERG-GKVIAVSDIT 285 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~G-akVVaVsD~~ 285 (457)
.+.++|+|+|.|+||+.++..|...| .. +.+-|.+
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~-l~L~Di~ 38 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGD-VVLYDVI 38 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCe-EEEEECC
Confidence 35679999999999999999998888 56 4477764
No 323
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=79.83 E-value=2.7 Score=44.97 Aligned_cols=35 Identities=29% Similarity=0.299 Sum_probs=31.3
Q ss_pred CCCCeEEEEecChHHHH-HHHHHHHCCCEEEEEECCC
Q 012750 250 IRDLTFVIQGFGNVGSW-AARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~-~a~~L~~~GakVVaVsD~~ 285 (457)
.++++|.|.|.|..|.. +|++|.++|++|. ++|.+
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~-~~D~~ 40 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVS-GSDLK 40 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEE-EECCC
Confidence 46789999999999999 7999999999987 78874
No 324
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=79.65 E-value=7.3 Score=33.94 Aligned_cols=100 Identities=20% Similarity=0.352 Sum_probs=53.8
Q ss_pred CeEEEEe----cChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCccccccc
Q 012750 253 LTFVIQG----FGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHEC 328 (457)
Q Consensus 253 ~~vaIqG----fGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~ 328 (457)
++++|+| -++.|..+.+.|.++|++|+.|.-..+.+. .+.-|+. + .| .-.++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~------------------G~~~y~s---l--~e-~p~~i 56 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEIL------------------GIKCYPS---L--AE-IPEPI 56 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEET------------------TEE-BSS---G--GG-CSST-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEEC------------------cEEeecc---c--cC-CCCCC
Confidence 5899999 699999999999999999998743322111 1111221 1 12 13466
Q ss_pred ceeeccccCCc----ccccccccccceEEEecCCCCCCHHHHHHHHhCCCeEe-cc
Q 012750 329 DVLIPCALGGV----LKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTIL-PD 379 (457)
Q Consensus 329 DIliPaA~~~~----It~~na~~i~akiIvEgAN~p~t~~a~~iL~~rGI~vi-PD 379 (457)
|+.+-|..... +.+--...+++=++.-| -.++++.+.+++.|+.++ |.
T Consensus 57 Dlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g---~~~~~~~~~a~~~gi~vigp~ 109 (116)
T PF13380_consen 57 DLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG---AESEELIEAAREAGIRVIGPN 109 (116)
T ss_dssp SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT---S--HHHHHHHHHTT-EEEESS
T ss_pred CEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc---hHHHHHHHHHHHcCCEEEeCC
Confidence 77666643222 11111112343344433 457888999999999998 64
No 325
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=79.55 E-value=3.1 Score=42.16 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=31.5
Q ss_pred CCCCCCeEEEEecC---hHHHHHHHHHHHCCCEEEEEEC
Q 012750 248 QAIRDLTFVIQGFG---NVGSWAARLIHERGGKVIAVSD 283 (457)
Q Consensus 248 ~~l~g~~vaIqGfG---nVG~~~a~~L~~~GakVVaVsD 283 (457)
.+++|++++|.|.| -+|+..|+.|++.|++|| +.|
T Consensus 4 ~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vv-v~~ 41 (299)
T PRK06300 4 IDLTGKIAFIAGIGDDQGYGWGIAKALAEAGATIL-VGT 41 (299)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEE-EEe
Confidence 56899999999996 899999999999999998 565
No 326
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=79.54 E-value=3.1 Score=41.38 Aligned_cols=95 Identities=14% Similarity=0.134 Sum_probs=53.4
Q ss_pred CCCeEEEEecChHHHHHHHHHHHCC----CEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeec-CCCcccc
Q 012750 251 RDLTFVIQGFGNVGSWAARLIHERG----GKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSM-EPSELLA 325 (457)
Q Consensus 251 ~g~~vaIqGfGnVG~~~a~~L~~~G----akVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i-~~~ell~ 325 (457)
+.++|.++|.|++|+.+++-|.+.| .+|+ ++|.+- .+.+..+..+.+ .+.. ++.++.
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~-v~~r~~---------~~~~~~l~~~~g-------~~~~~~~~e~~- 63 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQIT-VSNRSN---------ETRLQELHQKYG-------VKGTHNKKELL- 63 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEE-EECCCC---------HHHHHHHHHhcC-------ceEeCCHHHHH-
Confidence 4578999999999999999999887 4554 555421 122333333211 1111 222333
Q ss_pred cccceeeccccCCcccc---ccccccc-ceEEEecCCCCCCHH
Q 012750 326 HECDVLIPCALGGVLKR---ENAADVK-AKFIIEAANHPTDPE 364 (457)
Q Consensus 326 ~~~DIliPaA~~~~It~---~na~~i~-akiIvEgAN~p~t~~ 364 (457)
.+|||+|-|-....+.+ +..+.++ -++|+.-+++- +++
T Consensus 64 ~~aDvVilav~p~~~~~vl~~l~~~~~~~~liIs~~aGi-~~~ 105 (279)
T PRK07679 64 TDANILFLAMKPKDVAEALIPFKEYIHNNQLIISLLAGV-STH 105 (279)
T ss_pred hcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEECCCC-CHH
Confidence 37898888865443322 1112232 35788776653 444
No 327
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=79.52 E-value=2.9 Score=41.97 Aligned_cols=35 Identities=34% Similarity=0.484 Sum_probs=30.2
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
.++.+++|.|.|.||..+++++...|+++|.++|.
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~ 177 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET 177 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence 36789999999999999999998999997766665
No 328
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=79.46 E-value=3.5 Score=39.18 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=29.4
Q ss_pred CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEC
Q 012750 250 IRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSD 283 (457)
Q Consensus 250 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD 283 (457)
++++++.|.| .|.+|+.+++.|.++|++|+.+.+
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~ 35 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCG 35 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcC
Confidence 4678899998 499999999999999999986554
No 329
>PRK06523 short chain dehydrogenase; Provisional
Probab=79.40 E-value=3.4 Score=39.66 Aligned_cols=35 Identities=14% Similarity=0.303 Sum_probs=30.7
Q ss_pred CCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 012750 248 QAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 248 ~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs 282 (457)
.+++|+++.|.| .|.+|+.+++.|.++|++|+.++
T Consensus 5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~ 40 (260)
T PRK06523 5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTA 40 (260)
T ss_pred cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEe
Confidence 458899999999 58999999999999999998654
No 330
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.36 E-value=3.7 Score=38.91 Aligned_cols=35 Identities=26% Similarity=0.485 Sum_probs=30.3
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
+++++++.|.|. |.+|+.+++.|.++|++|+.+ |.
T Consensus 2 ~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~-~r 37 (253)
T PRK08217 2 DLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALI-DL 37 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE-eC
Confidence 367899999996 999999999999999998854 44
No 331
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=79.35 E-value=2.4 Score=42.15 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=23.5
Q ss_pred CCCeEEEEecChHHHHHHHHHHHCCC
Q 012750 251 RDLTFVIQGFGNVGSWAARLIHERGG 276 (457)
Q Consensus 251 ~g~~vaIqGfGnVG~~~a~~L~~~Ga 276 (457)
+..+|.|+|.|-+|+.+++.|.+.|.
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~ 35 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHH 35 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccc
Confidence 56899999999999999999998763
No 332
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=79.32 E-value=10 Score=35.08 Aligned_cols=47 Identities=30% Similarity=0.384 Sum_probs=31.2
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCCeEEE-EecChH---HHHHHHHHHHCCCEEEE
Q 012750 230 ATGRGVVYATEALLAEHGQAIRDLTFVI-QGFGNV---GSWAARLIHERGGKVIA 280 (457)
Q Consensus 230 aTg~Gv~~~~~~~l~~~g~~l~g~~vaI-qGfGnV---G~~~a~~L~~~GakVVa 280 (457)
..|++++..++..+. ..+..+|+| .|-||= |..+|++|.++|.+|..
T Consensus 7 ~Ag~~~a~~i~~~~~----~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v 57 (169)
T PF03853_consen 7 NAGRAIAELIRKLFG----SPKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTV 57 (169)
T ss_dssp HHHHHHHHHHHHHST----CCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHhc----ccCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEE
Confidence 467777776655542 445566655 798764 56788999999999874
No 333
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=79.29 E-value=5.9 Score=40.96 Aligned_cols=32 Identities=34% Similarity=0.392 Sum_probs=27.2
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
.+|+|.|.|.+|.-++..+...|+..|-+.|.
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~ 201 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDR 201 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence 39999999999999988888899866656676
No 334
>PRK06949 short chain dehydrogenase; Provisional
Probab=79.24 E-value=3.6 Score=39.30 Aligned_cols=35 Identities=20% Similarity=0.373 Sum_probs=30.5
Q ss_pred CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 012750 248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 248 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs 282 (457)
.+++++++.|.|- |.+|+++++.|.+.|++|+.+.
T Consensus 5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~ 40 (258)
T PRK06949 5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLAS 40 (258)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 3488999999985 9999999999999999988553
No 335
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=79.21 E-value=8.3 Score=40.50 Aligned_cols=32 Identities=31% Similarity=0.543 Sum_probs=28.2
Q ss_pred CeEEEEecChHHHHHHHHHHHC-----CCEEEEEECC
Q 012750 253 LTFVIQGFGNVGSWAARLIHER-----GGKVIAVSDI 284 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~-----GakVVaVsD~ 284 (457)
.||+|=|||-+|+.++|.+.+. ...||||-|.
T Consensus 4 ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~ 40 (361)
T PTZ00434 4 IKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDM 40 (361)
T ss_pred eEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCC
Confidence 5899999999999999998764 5799999885
No 336
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=79.14 E-value=3.5 Score=39.44 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=29.4
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEE
Q 012750 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (457)
Q Consensus 249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (457)
+++++++.|.|. |.+|+++++.|.++|++|+.+
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~ 37 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIA 37 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEE
Confidence 367899999985 999999999999999999854
No 337
>PRK07236 hypothetical protein; Provisional
Probab=79.13 E-value=3.4 Score=42.76 Aligned_cols=41 Identities=22% Similarity=0.152 Sum_probs=33.9
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNA 291 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp 291 (457)
++..+|+|+|-|.+|..+|..|.+.|.+|+ |.|.......+
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~-v~E~~~~~~~~ 44 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVD-VFERSPTELDG 44 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEE-EEecCCCCcCC
Confidence 556889999999999999999999999987 88865433444
No 338
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=78.99 E-value=11 Score=37.96 Aligned_cols=70 Identities=21% Similarity=0.254 Sum_probs=44.4
Q ss_pred CCCeEEEEecChHHH-HHHHHHHHCC--CEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccc
Q 012750 251 RDLTFVIQGFGNVGS-WAARLIHERG--GKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHE 327 (457)
Q Consensus 251 ~g~~vaIqGfGnVG~-~~a~~L~~~G--akVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~ 327 (457)
+-.||+|+|.|+.+. ..+..+.+.+ +.+++|+|.+ .+.+.+..++.+--..| -+.+++|..+
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~----------~~~a~~~a~~~~~~~~~-----~~~~~ll~~~ 66 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRD----------PERAEAFAEEFGIAKAY-----TDLEELLADP 66 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCC----------HHHHHHHHHHcCCCccc-----CCHHHHhcCC
Confidence 346899999997764 4666777655 5999999984 45555555543321112 1345667553
Q ss_pred -cceeeccc
Q 012750 328 -CDVLIPCA 335 (457)
Q Consensus 328 -~DIliPaA 335 (457)
+|+++=|+
T Consensus 67 ~iD~V~Iat 75 (342)
T COG0673 67 DIDAVYIAT 75 (342)
T ss_pred CCCEEEEcC
Confidence 77777664
No 339
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.94 E-value=3.5 Score=38.89 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=29.7
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 012750 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs 282 (457)
+++++++.|.|. |.+|+.+++.|.+.|++|+.++
T Consensus 2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~ 36 (238)
T PRK05786 2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINS 36 (238)
T ss_pred CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 367899999985 8899999999999999998653
No 340
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=78.85 E-value=3.4 Score=40.52 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=31.1
Q ss_pred CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEC
Q 012750 249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSD 283 (457)
Q Consensus 249 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD 283 (457)
.+++++|.|+|.|.|+..=++.|.+.|++|+-||-
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap 56 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSK 56 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 47799999999999999989999999999986663
No 341
>PLN02240 UDP-glucose 4-epimerase
Probab=78.78 E-value=3.5 Score=41.60 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=30.2
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 012750 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs 282 (457)
.+++++|.|.|- |.+|+++++.|.+.|.+|++++
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~ 36 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVID 36 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 467899999984 9999999999999999999765
No 342
>PRK05309 30S ribosomal protein S11; Validated
Probab=78.57 E-value=8.2 Score=34.66 Aligned_cols=65 Identities=20% Similarity=0.277 Sum_probs=49.3
Q ss_pred CCCcchHHHHHHHHHHHHH-HhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeC
Q 012750 226 GREAATGRGVVYATEALLA-EHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKN 290 (457)
Q Consensus 226 gr~~aTg~Gv~~~~~~~l~-~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iyn 290 (457)
|....|-|....+.+.+.+ ....+++...|.+-|+|.=-..+.+.|...|.+|+-|.|.+..-||
T Consensus 53 g~rK~T~~Aa~~aa~~~~~~~~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~~I~D~TpiphN 118 (128)
T PRK05309 53 GSRKSTPYAAQVAAEDAAKKAKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVTSIKDVTPIPHN 118 (128)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEEEcCCCCCC
Confidence 4456777777777776665 2334567888999999986677778899999999999998765554
No 343
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=78.52 E-value=3.3 Score=42.13 Aligned_cols=33 Identities=27% Similarity=0.466 Sum_probs=29.4
Q ss_pred CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 012750 250 IRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 250 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs 282 (457)
++|++|.|.|. |-+|+++++.|.+.|.+|++++
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~ 35 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYS 35 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEe
Confidence 46889999985 9999999999999999999764
No 344
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=78.46 E-value=7.1 Score=40.18 Aligned_cols=118 Identities=15% Similarity=0.153 Sum_probs=67.8
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHH
Q 012750 223 GSLGREAATGRGVVYATEALLAEHGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLA 301 (457)
Q Consensus 223 Gs~gr~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~ 301 (457)
|..|-.+.|+| .++.+. ...-+|.+|.|.| .|.||+-+-++-.-.|.+|||++-++- +..-
T Consensus 132 g~lGm~glTAy---~Gf~ei----~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc~VVGsaGS~E-----------Kv~l 193 (343)
T KOG1196|consen 132 GLLGMPGLTAY---AGFYEI----CSPKKGETVFVSAASGAVGQLVGQFAKLMGCYVVGSAGSKE-----------KVDL 193 (343)
T ss_pred hccCCchhHHH---HHHHHh----cCCCCCCEEEEeeccchhHHHHHHHHHhcCCEEEEecCChh-----------hhhh
Confidence 44444555655 333333 3445789999999 599999888877778999999987742 1211
Q ss_pred hHhhcCCcc--cCCCCeecCCCc----ccccccceeeccccCCccccccc-ccccceEEEecCCCC
Q 012750 302 HKDKTGSLK--DFDGGDSMEPSE----LLAHECDVLIPCALGGVLKRENA-ADVKAKFIIEAANHP 360 (457)
Q Consensus 302 ~~~~~g~~~--~~~~~~~i~~~e----ll~~~~DIliPaA~~~~It~~na-~~i~akiIvEgAN~p 360 (457)
++.+.|.-. +|.. .-+..+ .+....||++..-.++.++.--. =+.+.||++.|+=.+
T Consensus 194 l~~~~G~d~afNYK~--e~~~~~aL~r~~P~GIDiYfeNVGG~~lDavl~nM~~~gri~~CG~ISq 257 (343)
T KOG1196|consen 194 LKTKFGFDDAFNYKE--ESDLSAALKRCFPEGIDIYFENVGGKMLDAVLLNMNLHGRIAVCGMISQ 257 (343)
T ss_pred hHhccCCccceeccC--ccCHHHHHHHhCCCcceEEEeccCcHHHHHHHHhhhhccceEeeeeehh
Confidence 222222111 1110 001112 23456799998866655543211 125788998887543
No 345
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=78.45 E-value=3.6 Score=44.46 Aligned_cols=163 Identities=17% Similarity=0.130 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCee-cCCCccccc--ccceeeccccCCc
Q 012750 263 VGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDS-MEPSELLAH--ECDVLIPCALGGV 339 (457)
Q Consensus 263 VG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~-i~~~ell~~--~~DIliPaA~~~~ 339 (457)
+|+++|+-|.++|.+|+ |.|.+ .+...++.+..+. + .+... -+++++.+. .+|+++-|-..+.
T Consensus 1 MG~~mA~nL~~~G~~V~-v~nrt----------~~~~~~l~~~~g~--~-~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~ 66 (459)
T PRK09287 1 MGKNLALNIASHGYTVA-VYNRT----------PEKTDEFLAEEGK--G-KKIVPAYTLEEFVASLEKPRKILLMVKAGA 66 (459)
T ss_pred CcHHHHHHHHhCCCeEE-EECCC----------HHHHHHHHHhhCC--C-CCeEeeCCHHHHHhhCCCCCEEEEECCCch
Confidence 58899999999999987 66663 3444444432111 0 01111 134455432 5788877754433
Q ss_pred cccccc----ccc-cceEEEecCCCC--CCHHHHHHHHhCCCeEecccccccCCce---------e----hhHHHhhhc-
Q 012750 340 LKRENA----ADV-KAKFIIEAANHP--TDPEADEILSKRGVTILPDIYANSGGVT---------V----SYFEWVQNI- 398 (457)
Q Consensus 340 It~~na----~~i-~akiIvEgAN~p--~t~~a~~iL~~rGI~viPD~laNaGGVi---------~----S~~E~~qn~- 398 (457)
..++.. +.+ .-++|+++.|.- .|.+..+.|+++||.++---+ +||.. + ..|+.++.+
T Consensus 67 ~v~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapV--SGG~~gA~~G~siM~GG~~~a~~~~~piL 144 (459)
T PRK09287 67 PVDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGV--SGGEEGALHGPSIMPGGQKEAYELVAPIL 144 (459)
T ss_pred HHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCC--CCCHHHHhcCCEEEEeCCHHHHHHHHHHH
Confidence 332222 223 357999999864 345556789999998863222 22221 1 122333221
Q ss_pred ---c-----c---CCCC--------HHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHH
Q 012750 399 ---Q-----G---FMWE--------EDKVNNELRRYMIRAFHNIKGMCQ-THNCNLRMGAFTL 441 (457)
Q Consensus 399 ---~-----~---~~w~--------~e~v~~~l~~~m~~~~~~v~~~a~-~~~~~~r~aA~~~ 441 (457)
. + ..|- -+-|+..++..+-+.+.+.+...+ ..|+++.+.+.++
T Consensus 145 ~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~ 207 (459)
T PRK09287 145 EKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVF 207 (459)
T ss_pred HHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 0 0 0110 124566677777788888888888 4788877666554
No 346
>PRK07411 hypothetical protein; Validated
Probab=78.45 E-value=2.5 Score=44.55 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=31.6
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
|+..+|.|+|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 36 L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D 71 (390)
T PRK07411 36 LKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD 71 (390)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 577899999999999999999999998666677764
No 347
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=78.43 E-value=1.7 Score=49.70 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=28.7
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
++|+|+|.|.+|+..|..+...|..|+ +.|.+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~-l~d~~ 367 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTV-LKDAT 367 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEE-EecCC
Confidence 579999999999999999999999998 66764
No 348
>PLN02712 arogenate dehydrogenase
Probab=78.40 E-value=3.1 Score=47.02 Aligned_cols=32 Identities=34% Similarity=0.599 Sum_probs=28.1
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEE
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAV 281 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaV 281 (457)
-+.++|+|+|+|++|+.+++.|.+.|.+|+++
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~ 81 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAH 81 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEE
Confidence 34578999999999999999999999998754
No 349
>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]
Probab=78.15 E-value=6.9 Score=40.06 Aligned_cols=94 Identities=18% Similarity=0.226 Sum_probs=57.9
Q ss_pred CCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHH-----hHhhcCCcccCCC----CeecCCC
Q 012750 252 DLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLA-----HKDKTGSLKDFDG----GDSMEPS 321 (457)
Q Consensus 252 g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~-----~~~~~g~~~~~~~----~~~i~~~ 321 (457)
+++..|.|. |-.|+.+|++|.++|+.|-|+.-.+ +.+|+..+.+-.+-. +.-..|.+.++.. -+.+.|+
T Consensus 2 ~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrs-s~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~Pd 80 (345)
T COG1089 2 GKVALITGITGQDGSYLAELLLEKGYEVHGIKRRS-SSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQPD 80 (345)
T ss_pred CceEEEecccCCchHHHHHHHHhcCcEEEEEeecc-ccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhcCch
Confidence 467788895 9999999999999999999987543 234444321111000 0001122222211 0135688
Q ss_pred cccccccceeeccccCCcccccccc
Q 012750 322 ELLAHECDVLIPCALGGVLKRENAA 346 (457)
Q Consensus 322 ell~~~~DIliPaA~~~~It~~na~ 346 (457)
|+..+.+--+|+.++++...-.|++
T Consensus 81 EIYNLaAQS~V~vSFe~P~~T~~~~ 105 (345)
T COG1089 81 EIYNLAAQSHVGVSFEQPEYTADVD 105 (345)
T ss_pred hheeccccccccccccCcceeeeec
Confidence 8998888889999888765544443
No 350
>PRK06125 short chain dehydrogenase; Provisional
Probab=78.15 E-value=4.1 Score=39.23 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=29.8
Q ss_pred CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEE
Q 012750 248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (457)
Q Consensus 248 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (457)
.++++++++|.|. |.+|+.+++.|.+.|++|+.+
T Consensus 3 ~~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~ 37 (259)
T PRK06125 3 LHLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLV 37 (259)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE
Confidence 3578999999996 899999999999999998854
No 351
>PRK09186 flagellin modification protein A; Provisional
Probab=78.09 E-value=3.7 Score=39.16 Aligned_cols=32 Identities=41% Similarity=0.579 Sum_probs=28.7
Q ss_pred CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEE
Q 012750 250 IRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (457)
Q Consensus 250 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (457)
++++++.|.|. |.+|+++|+.|.+.|++|+.+
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~ 34 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAA 34 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 57899999995 899999999999999999865
No 352
>PRK08339 short chain dehydrogenase; Provisional
Probab=78.08 E-value=4.1 Score=39.77 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=30.7
Q ss_pred CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750 248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 248 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
.+++|+++.|.|. |.+|+.+|+.|.+.|++|+. .|.
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~-~~r 40 (263)
T PRK08339 4 IDLSGKLAFTTASSKGIGFGVARVLARAGADVIL-LSR 40 (263)
T ss_pred cCCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEE-EeC
Confidence 3578999999985 78999999999999999884 454
No 353
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=78.07 E-value=3.6 Score=35.72 Aligned_cols=42 Identities=24% Similarity=0.348 Sum_probs=31.5
Q ss_pred eEEEEe-cChHHHHHHHHHHHC-CCEEEEEECCCCeeeCCCCCCHHHH
Q 012750 254 TFVIQG-FGNVGSWAARLIHER-GGKVIAVSDITGAVKNADGIDIHKL 299 (457)
Q Consensus 254 ~vaIqG-fGnVG~~~a~~L~~~-GakVVaVsD~~G~iynp~GLDi~~L 299 (457)
||+|+| .|.||+.++++|.++ .+.++.+..++. ..|..+...
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~----~~g~~~~~~ 44 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR----SAGKPLSEV 44 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT----TTTSBHHHT
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc----ccCCeeehh
Confidence 689999 999999999999875 568887776643 245554444
No 354
>PRK12829 short chain dehydrogenase; Provisional
Probab=78.05 E-value=3.7 Score=39.35 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=29.4
Q ss_pred CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 012750 250 IRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 250 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs 282 (457)
++++++.|.| .|.+|+.+++.|.++|++|+.+.
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~ 42 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCD 42 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 7889999998 49999999999999999988554
No 355
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.04 E-value=3.1 Score=41.87 Aligned_cols=31 Identities=32% Similarity=0.508 Sum_probs=27.2
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
++|+|+|.|++|+.+|..|.+.|.+|+ +.|.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~-~~d~ 35 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVV-LIDV 35 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEE-EEEC
Confidence 479999999999999999999999887 4454
No 356
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=78.00 E-value=2.9 Score=45.09 Aligned_cols=36 Identities=31% Similarity=0.437 Sum_probs=32.4
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITG 286 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G 286 (457)
..+++|+|.|+|.-|..++++|.+.|++|+ |+|.+-
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~-v~D~~~ 40 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVT-VSDDRP 40 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEE-EEcCCC
Confidence 458999999999999999999999999998 788754
No 357
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=77.98 E-value=3.8 Score=39.48 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=29.7
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEE
Q 012750 249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAV 281 (457)
Q Consensus 249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaV 281 (457)
+++|+++.|.| .|.+|..+++.|.++|++|+++
T Consensus 7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~ 40 (253)
T PRK08993 7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGI 40 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEe
Confidence 47899999998 5899999999999999999865
No 358
>PRK08703 short chain dehydrogenase; Provisional
Probab=77.93 E-value=4.2 Score=38.63 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=29.7
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 012750 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs 282 (457)
+++++++.|.|. |.+|..+++.|.++|++|+.++
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~ 37 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILVA 37 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEe
Confidence 478899999984 9999999999999999988553
No 359
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=77.93 E-value=2.9 Score=43.56 Aligned_cols=36 Identities=25% Similarity=0.262 Sum_probs=31.7
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
|++.+|.|+|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 678899999999999999999999998666677765
No 360
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=77.74 E-value=6.9 Score=40.23 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=30.5
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
..|.+|+|.|.|.||..+++++...|++|+++.+.
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~ 216 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSS 216 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46889999999999999999999999998866543
No 361
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=77.74 E-value=3.1 Score=41.41 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=27.4
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
++|+|+|.|.+|..+|..|...|..|+ +.|.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~-~~d~ 34 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVV-MVDI 34 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceE-EEeC
Confidence 479999999999999999999999888 4565
No 362
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=77.73 E-value=7.2 Score=41.42 Aligned_cols=35 Identities=29% Similarity=0.339 Sum_probs=31.1
Q ss_pred CCCCCCeEEEEec-----------------ChHHHHHHHHHHHCCCEEEEEE
Q 012750 248 QAIRDLTFVIQGF-----------------GNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 248 ~~l~g~~vaIqGf-----------------GnVG~~~a~~L~~~GakVVaVs 282 (457)
.+++|++|.|.|- |.+|..+|+.|.+.|++|+.++
T Consensus 184 ~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~ 235 (399)
T PRK05579 184 KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVS 235 (399)
T ss_pred cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeC
Confidence 4689999999986 8899999999999999998554
No 363
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=77.72 E-value=3.5 Score=42.09 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=31.6
Q ss_pred CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEC
Q 012750 248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSD 283 (457)
Q Consensus 248 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD 283 (457)
+-+++++|.|.|. |-+|+++++.|.++|.+|+++..
T Consensus 11 ~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~ 47 (348)
T PRK15181 11 LVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDN 47 (348)
T ss_pred ccccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 3477899999995 99999999999999999998754
No 364
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=77.65 E-value=3.7 Score=39.22 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=29.8
Q ss_pred CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750 250 IRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 250 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
++++++.|.| .|.+|.++++.|.+.|++|+.+ |.
T Consensus 10 ~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~-~r 44 (247)
T PRK08945 10 LKDRIILVTGAGDGIGREAALTYARHGATVILL-GR 44 (247)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEE-eC
Confidence 6899999998 5999999999999999999854 44
No 365
>CHL00041 rps11 ribosomal protein S11
Probab=77.65 E-value=9.2 Score=33.70 Aligned_cols=65 Identities=25% Similarity=0.244 Sum_probs=49.1
Q ss_pred CCCcchHHHHHHHHHHHHH-HhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeC
Q 012750 226 GREAATGRGVVYATEALLA-EHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKN 290 (457)
Q Consensus 226 gr~~aTg~Gv~~~~~~~l~-~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iyn 290 (457)
|....|-|....+.+.+++ .....++...|.|-|+|.=-..+.+-|.+.|.+|+-|.|.+..-||
T Consensus 49 g~rK~T~~Aa~~~a~~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~~I~D~TpiphN 114 (116)
T CHL00041 49 GARKGTPFAAQTAAENAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLSSIRDVTPMPHN 114 (116)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEEEcCCCCCC
Confidence 3446777777777766665 2334578888999999976667778999999999999998765554
No 366
>PRK09072 short chain dehydrogenase; Provisional
Probab=77.61 E-value=4.3 Score=39.17 Aligned_cols=34 Identities=21% Similarity=0.474 Sum_probs=29.7
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 012750 249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs 282 (457)
+++++++.|.| .|.+|+.+++.|.++|++|+.++
T Consensus 2 ~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~ 36 (263)
T PRK09072 2 DLKDKRVLLTGASGGIGQALAEALAAAGARLLLVG 36 (263)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEE
Confidence 46788999998 59999999999999999988554
No 367
>PRK06057 short chain dehydrogenase; Provisional
Probab=77.56 E-value=4 Score=39.21 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=29.3
Q ss_pred CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEE
Q 012750 250 IRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (457)
Q Consensus 250 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (457)
++|++|.|.|. |.+|..+++.|.++|++|+.+
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~ 37 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVG 37 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEE
Confidence 78999999996 999999999999999999854
No 368
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=77.53 E-value=3.5 Score=42.74 Aligned_cols=32 Identities=31% Similarity=0.444 Sum_probs=29.2
Q ss_pred CCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 012750 251 RDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 251 ~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs 282 (457)
++++|+|.|- |.||+++++.|.++|.+|++++
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~ 52 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASD 52 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEE
Confidence 5689999996 9999999999999999999875
No 369
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=77.47 E-value=4.3 Score=39.26 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=31.4
Q ss_pred CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750 248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 248 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
.+++++++.|.|. +.+|+.+|+.|.+.|++|+.++++
T Consensus 4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~ 41 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNS 41 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 3588999999985 899999999999999999855443
No 370
>PRK07806 short chain dehydrogenase; Provisional
Probab=77.33 E-value=4.9 Score=38.20 Aligned_cols=35 Identities=17% Similarity=0.311 Sum_probs=30.3
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEC
Q 012750 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSD 283 (457)
Q Consensus 249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD 283 (457)
+++++++.|.|. |.+|+++++.|.++|++|++++.
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r 38 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYR 38 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 367899999995 99999999999999999986543
No 371
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=77.31 E-value=7.7 Score=41.24 Aligned_cols=92 Identities=14% Similarity=0.168 Sum_probs=59.5
Q ss_pred CCCCeEEEEec----------ChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecC
Q 012750 250 IRDLTFVIQGF----------GNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSME 319 (457)
Q Consensus 250 l~g~~vaIqGf----------GnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~ 319 (457)
++|++|+|-|. -.-...+++.|.++|++|++ |||.... +.+. .|++.+..+
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~a--------YDP~a~~-----~~~~------~~~~~~~~~ 368 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIA--------YDPVAME-----NAFR------NFPDVELES 368 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEE--------ECchhhH-----HHHh------cCCCceEeC
Confidence 99999999995 45677888999999999983 7776422 1111 233333333
Q ss_pred CCcccccccceeeccccCCcccccccc--cccceEEEecCCCC
Q 012750 320 PSELLAHECDVLIPCALGGVLKRENAA--DVKAKFIIEAANHP 360 (457)
Q Consensus 320 ~~ell~~~~DIliPaA~~~~It~~na~--~i~akiIvEgAN~p 360 (457)
..+-.-..+|+++-+.--+.+..-+-+ .++.++|+.|-|..
T Consensus 369 ~~~~~~~~aDaivi~tew~ef~~~d~~~~~m~~~~v~DgRni~ 411 (414)
T COG1004 369 DAEEALKGADAIVINTEWDEFRDLDFEKLLMKTPVVIDGRNIF 411 (414)
T ss_pred CHHHHHhhCCEEEEeccHHHHhccChhhhhccCCEEEeccccc
Confidence 322233478999988654444333322 57889999998853
No 372
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=77.30 E-value=4.1 Score=38.77 Aligned_cols=33 Identities=18% Similarity=0.334 Sum_probs=29.1
Q ss_pred CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 012750 250 IRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 250 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs 282 (457)
++++++.|.| .|.+|+++++.|.++|++|+.+.
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~ 35 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIAD 35 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEe
Confidence 5678999998 69999999999999999998653
No 373
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.21 E-value=4.4 Score=38.49 Aligned_cols=35 Identities=14% Similarity=0.123 Sum_probs=29.3
Q ss_pred CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750 250 IRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 250 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
+++++++|.| -|.+|+.+++.|.++|++|+.+.+.
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r 37 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYAR 37 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 4678999998 4999999999999999998854443
No 374
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.15 E-value=4.4 Score=38.54 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=29.2
Q ss_pred CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEC
Q 012750 250 IRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSD 283 (457)
Q Consensus 250 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD 283 (457)
+++++++|.| .|.+|+++++.|.++|++|+.+.+
T Consensus 3 l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~ 37 (253)
T PRK08642 3 ISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYH 37 (253)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcC
Confidence 5778999998 699999999999999999985433
No 375
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=77.12 E-value=4.5 Score=38.75 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=30.9
Q ss_pred CCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750 248 QAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 248 ~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
.+++++++.|.| .|.+|+.+++.|.+.|++|+.+ +.
T Consensus 7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~-~r 43 (256)
T PRK06124 7 FSLAGQVALVTGSARGLGFEIARALAGAGAHVLVN-GR 43 (256)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEE-eC
Confidence 348899999998 5999999999999999999854 44
No 376
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.04 E-value=4 Score=40.20 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=29.7
Q ss_pred CCCCeEEEEecC---hHHHHHHHHHHHCCCEEEEEECC
Q 012750 250 IRDLTFVIQGFG---NVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 250 l~g~~vaIqGfG---nVG~~~a~~L~~~GakVVaVsD~ 284 (457)
++|++++|.|-+ .+|+.+|+.|++.|++|+ +.+.
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~-~~~r 41 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELA-FTYQ 41 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEE-EecC
Confidence 688999999986 699999999999999998 4444
No 377
>PLN02427 UDP-apiose/xylose synthase
Probab=76.92 E-value=4 Score=42.16 Aligned_cols=36 Identities=31% Similarity=0.455 Sum_probs=31.2
Q ss_pred CCCCCCCeEEEEe-cChHHHHHHHHHHHC-CCEEEEEE
Q 012750 247 GQAIRDLTFVIQG-FGNVGSWAARLIHER-GGKVIAVS 282 (457)
Q Consensus 247 g~~l~g~~vaIqG-fGnVG~~~a~~L~~~-GakVVaVs 282 (457)
|+.++.++|.|.| .|-+|+++++.|.++ |.+|+++.
T Consensus 9 ~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~ 46 (386)
T PLN02427 9 GKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALD 46 (386)
T ss_pred CCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEe
Confidence 5668888999999 599999999999988 58999775
No 378
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=76.86 E-value=4.4 Score=39.19 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=30.8
Q ss_pred CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750 250 IRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 250 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
.++++|.|.| .|.+|+.+++.|.+.|++|++++..
T Consensus 15 ~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~ 50 (251)
T PLN00141 15 VKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRD 50 (251)
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecC
Confidence 6778999999 5999999999999999999977643
No 379
>PRK12742 oxidoreductase; Provisional
Probab=76.86 E-value=4.6 Score=38.05 Aligned_cols=33 Identities=18% Similarity=0.201 Sum_probs=29.1
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEE
Q 012750 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (457)
Q Consensus 249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (457)
.++++++.|.|- |.+|+.+++.|.+.|++|+.+
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~ 36 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFT 36 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEe
Confidence 367899999994 999999999999999998854
No 380
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=76.76 E-value=3.1 Score=43.90 Aligned_cols=36 Identities=14% Similarity=0.337 Sum_probs=31.5
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
|+..+|.|+|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 40 L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D 75 (392)
T PRK07878 40 LKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD 75 (392)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 577899999999999999999999998666688754
No 381
>PRK06172 short chain dehydrogenase; Provisional
Probab=76.76 E-value=4.3 Score=38.83 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=30.3
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750 249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
.++++++.|.| .|.+|..+++.|.+.|++|+.+ +.
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~-~r 39 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVA-DR 39 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE-eC
Confidence 47889999998 5999999999999999998854 44
No 382
>PRK09620 hypothetical protein; Provisional
Probab=76.74 E-value=4.5 Score=39.62 Aligned_cols=34 Identities=21% Similarity=0.359 Sum_probs=29.0
Q ss_pred CCCCeEEEEec-----------------ChHHHHHHHHHHHCCCEEEEEEC
Q 012750 250 IRDLTFVIQGF-----------------GNVGSWAARLIHERGGKVIAVSD 283 (457)
Q Consensus 250 l~g~~vaIqGf-----------------GnVG~~~a~~L~~~GakVVaVsD 283 (457)
++|++|.|.+. |-+|+++|+.|.++|++|+.|..
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g 51 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHG 51 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeC
Confidence 46888888743 89999999999999999997754
No 383
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=76.67 E-value=4.4 Score=36.77 Aligned_cols=30 Identities=30% Similarity=0.400 Sum_probs=27.2
Q ss_pred EEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750 255 FVIQGF-GNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 255 vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
|+|.|- |.+|+.+++.|.++|.+|++++-+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~ 31 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRS 31 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecC
Confidence 678885 999999999999999999998865
No 384
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=76.66 E-value=10 Score=32.97 Aligned_cols=65 Identities=20% Similarity=0.256 Sum_probs=49.7
Q ss_pred CCCcchHHHHHHHHHHHHH-HhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeC
Q 012750 226 GREAATGRGVVYATEALLA-EHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKN 290 (457)
Q Consensus 226 gr~~aTg~Gv~~~~~~~l~-~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iyn 290 (457)
|....|-|....+.+.+.+ .....++...|.+-|+|.=-..+.+.|.+.|.+|+-|.|.+..-||
T Consensus 36 g~rk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~I~D~T~iphN 101 (108)
T TIGR03632 36 GSKKSTPYAAQLAAEDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTSIKDVTPIPHN 101 (108)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEEEcCCCCCC
Confidence 4456788877777776665 2335578888999999986677778999999999999998766554
No 385
>PRK07890 short chain dehydrogenase; Provisional
Probab=76.63 E-value=4.3 Score=38.80 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=29.4
Q ss_pred CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750 250 IRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 250 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
++++++.|.| .|.+|+.+++.|.++|++|+. .+.
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~-~~r 37 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVL-AAR 37 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEE-EeC
Confidence 5789999998 499999999999999999984 454
No 386
>PRK05867 short chain dehydrogenase; Provisional
Probab=76.58 E-value=4.7 Score=38.66 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=30.2
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
+++|+++.|.|. |.+|+.+++.|.++|++|+. .+.
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~-~~r 41 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAI-AAR 41 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEE-EcC
Confidence 478999999995 89999999999999999984 444
No 387
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=76.55 E-value=3.6 Score=41.63 Aligned_cols=32 Identities=25% Similarity=0.223 Sum_probs=27.8
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
++|+|+|.|.+|..+|..|.++|.+|+ +.|.+
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~-v~d~~ 34 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVR-LWDAD 34 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeE-EEeCC
Confidence 379999999999999999999999988 55553
No 388
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=76.54 E-value=4.5 Score=39.26 Aligned_cols=35 Identities=14% Similarity=0.228 Sum_probs=30.1
Q ss_pred CCCCCeEEEEecC---hHHHHHHHHHHHCCCEEEEEECC
Q 012750 249 AIRDLTFVIQGFG---NVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 249 ~l~g~~vaIqGfG---nVG~~~a~~L~~~GakVVaVsD~ 284 (457)
+++|++++|.|.+ .+|..+|+.|.+.|++|+ +.+.
T Consensus 7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~-l~~r 44 (258)
T PRK07533 7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAELA-VTYL 44 (258)
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEE-EEeC
Confidence 4789999999975 699999999999999987 5555
No 389
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=76.53 E-value=3 Score=42.26 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=28.7
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs 282 (457)
...++|+|.|.|.||..+|..|.+.|..|+-++
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~ 35 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLL 35 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEE
Confidence 345789999999999999999999999888554
No 390
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=76.52 E-value=2.5 Score=48.21 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=28.6
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
++|+|+|.|.+|...|..++..|..|+ +.|.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~-l~d~~ 345 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIV-MKDIN 345 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEE-EEeCC
Confidence 479999999999999999999999998 66764
No 391
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=76.44 E-value=4.7 Score=40.60 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=31.7
Q ss_pred CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750 250 IRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 250 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
+.+++++|.| .+..|..+|+.|+++|+.||-|+-+
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~ 39 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARR 39 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence 5788999999 5999999999999999999988765
No 392
>PRK05875 short chain dehydrogenase; Provisional
Probab=76.38 E-value=4.8 Score=39.08 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=30.1
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 012750 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs 282 (457)
+++++++.|.|. |.+|+.+++.|.++|++|+.++
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~ 38 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVG 38 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 478899999995 8999999999999999998654
No 393
>PRK05876 short chain dehydrogenase; Provisional
Probab=76.38 E-value=4.3 Score=39.97 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=29.9
Q ss_pred CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750 250 IRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 250 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
++|+++.|.| .|.+|+.+++.|.++|++|+ ++|.
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv-~~~r 38 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGARVV-LGDV 38 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEeC
Confidence 6889999998 69999999999999999988 5554
No 394
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=76.27 E-value=3.5 Score=45.37 Aligned_cols=34 Identities=21% Similarity=0.165 Sum_probs=30.5
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
..|++|+|+|.|..|..+|..|.++|++|+ |.|.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~-v~e~ 168 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVT-IFEA 168 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEE-EEec
Confidence 468999999999999999999999999987 6664
No 395
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=76.27 E-value=4.8 Score=37.75 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=29.0
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 012750 249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs 282 (457)
++.+++++|.| .|.+|+.+++.|.++|++|+.++
T Consensus 2 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~ 36 (246)
T PRK05653 2 SLQGKTALVTGASRGIGRAIALRLAADGAKVVIYD 36 (246)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 35678999998 59999999999999999987554
No 396
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=76.17 E-value=4.4 Score=39.17 Aligned_cols=32 Identities=22% Similarity=0.376 Sum_probs=28.7
Q ss_pred CCCCeEEEEecC---hHHHHHHHHHHHCCCEEEEE
Q 012750 250 IRDLTFVIQGFG---NVGSWAARLIHERGGKVIAV 281 (457)
Q Consensus 250 l~g~~vaIqGfG---nVG~~~a~~L~~~GakVVaV 281 (457)
++|++++|.|-+ .+|+.+|+.|.+.|++|+.+
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~ 39 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYT 39 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEe
Confidence 789999999975 79999999999999999843
No 397
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.16 E-value=4.9 Score=40.27 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=31.1
Q ss_pred CCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750 248 QAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 248 ~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
.+++|++++|.| .|.+|+.+|+.|.++|++|+ +.|.
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv-~~~~ 44 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGATVV-VNDV 44 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEE-EecC
Confidence 458999999998 58999999999999999988 5554
No 398
>PRK09135 pteridine reductase; Provisional
Probab=76.16 E-value=5.1 Score=37.83 Aligned_cols=34 Identities=24% Similarity=0.244 Sum_probs=29.4
Q ss_pred CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEC
Q 012750 250 IRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSD 283 (457)
Q Consensus 250 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD 283 (457)
.+++++.|.| .|.+|+++++.|.++|++|++++.
T Consensus 4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r 38 (249)
T PRK09135 4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHYH 38 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcC
Confidence 4568899998 599999999999999999996653
No 399
>PRK06194 hypothetical protein; Provisional
Probab=76.11 E-value=4.6 Score=39.46 Aligned_cols=35 Identities=26% Similarity=0.271 Sum_probs=29.6
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750 249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
+++++++.|.| -|.+|+++++.|.++|++|+. .|.
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~-~~r 38 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGMKLVL-ADV 38 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEE-EeC
Confidence 36788999998 589999999999999999884 444
No 400
>PRK12939 short chain dehydrogenase; Provisional
Probab=76.03 E-value=5 Score=38.00 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=29.5
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEE
Q 012750 249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAV 281 (457)
Q Consensus 249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaV 281 (457)
.++++++.|.| .|.+|+++++.|.++|++|+.+
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~ 37 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFN 37 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEE
Confidence 36789999998 5999999999999999999865
No 401
>PRK07831 short chain dehydrogenase; Provisional
Probab=75.95 E-value=4.6 Score=39.00 Aligned_cols=34 Identities=32% Similarity=0.548 Sum_probs=29.1
Q ss_pred CCCCeEEEEec-C-hHHHHHHHHHHHCCCEEEEEECC
Q 012750 250 IRDLTFVIQGF-G-NVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 250 l~g~~vaIqGf-G-nVG~~~a~~L~~~GakVVaVsD~ 284 (457)
++++++.|.|- | .+|+.+++.|.++|++|+ +.|.
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~-~~~~ 50 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGARVV-ISDI 50 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCCEEE-EEeC
Confidence 67899999996 6 699999999999999987 4554
No 402
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=75.87 E-value=5.1 Score=38.40 Aligned_cols=35 Identities=26% Similarity=0.449 Sum_probs=30.3
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750 249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
+++++++.|.| .|.+|+.+++.|.++|++|+ +.+.
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vv-l~~r 41 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGAEII-INDI 41 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCCEEE-EEcC
Confidence 47889999998 58999999999999999998 4454
No 403
>PRK08291 ectoine utilization protein EutC; Validated
Probab=75.74 E-value=27 Score=35.83 Aligned_cols=120 Identities=11% Similarity=-0.002 Sum_probs=66.9
Q ss_pred CCCCeEEEEecChHHHHHHHHHHH-CCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecC-CCcccccc
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHE-RGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSME-PSELLAHE 327 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~-~~ell~~~ 327 (457)
...++++|.|.|..|+..+..|.. .+.+-|.|.+.+ .+.+.++.++...-.+.+ ....+ .++.+ .+
T Consensus 130 ~~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~----------~~~a~~l~~~~~~~~g~~-v~~~~d~~~al-~~ 197 (330)
T PRK08291 130 EDASRAAVIGAGEQARLQLEALTLVRPIREVRVWARD----------AAKAEAYAADLRAELGIP-VTVARDVHEAV-AG 197 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCC----------HHHHHHHHHHHhhccCce-EEEeCCHHHHH-cc
Confidence 345799999999999998887774 566666677653 344444433211100110 01111 12333 37
Q ss_pred cceeeccccC--CcccccccccccceEEEecCCCCCCHHHHHHHHhCCCeEeccccc
Q 012750 328 CDVLIPCALG--GVLKRENAADVKAKFIIEAANHPTDPEADEILSKRGVTILPDIYA 382 (457)
Q Consensus 328 ~DIliPaA~~--~~It~~na~~i~akiIvEgAN~p~t~~a~~iL~~rGI~viPD~la 382 (457)
+||++-|+.. -.+..+.++ -.+.+.+=|++.|.-.|.+.-+-++.-.|+-|.+.
T Consensus 198 aDiVi~aT~s~~p~i~~~~l~-~g~~v~~vg~d~~~~rEld~~~l~~a~~v~vD~~~ 253 (330)
T PRK08291 198 ADIIVTTTPSEEPILKAEWLH-PGLHVTAMGSDAEHKNEIAPAVFAAADLYVCDRLS 253 (330)
T ss_pred CCEEEEeeCCCCcEecHHHcC-CCceEEeeCCCCCCcccCCHHHHhhCCEEEeCCHH
Confidence 8999888643 233333222 12356667788877666665444444445556543
No 404
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.73 E-value=4 Score=43.36 Aligned_cols=31 Identities=39% Similarity=0.529 Sum_probs=28.3
Q ss_pred eEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 254 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
+|.|+|.|..|..+|++|.++|++|. ++|..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~-~~D~~ 32 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVV-VSDRN 32 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEE-EECCC
Confidence 68999999999999999999999987 78864
No 405
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=75.63 E-value=12 Score=39.90 Aligned_cols=106 Identities=19% Similarity=0.214 Sum_probs=60.7
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCCHHHHHHhHhhcC---CcccCCCCeecCCCcc---ccc
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDITGAVKNADGIDIHKLLAHKDKTG---SLKDFDGGDSMEPSEL---LAH 326 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLDi~~L~~~~~~~g---~~~~~~~~~~i~~~el---l~~ 326 (457)
..+-|+|.|.+|+++|.-+.++|++|. |.+.+ .+...+..++.+ .+..+. . -+|+ |+.
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~Va-vyNRt----------~~ktd~f~~~~~~~k~i~~~~---s--ieefV~~Le~ 67 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVA-VYNRT----------TEKTDEFLAERAKGKNIVPAY---S--IEEFVASLEK 67 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEE-EEeCC----------HHHHHHHHHhCccCCCccccC---c--HHHHHHHhcC
Confidence 457899999999999999999999986 65553 233444444433 333221 1 1221 111
Q ss_pred ccc--eeeccccCCccccccccc----c-cceEEEecCCCCC--CHHHHHHHHhCCCeEe
Q 012750 327 ECD--VLIPCALGGVLKRENAAD----V-KAKFIIEAANHPT--DPEADEILSKRGVTIL 377 (457)
Q Consensus 327 ~~D--IliPaA~~~~It~~na~~----i-~akiIvEgAN~p~--t~~a~~iL~~rGI~vi 377 (457)
|=- ++|-|. ..++ ..++. + +--||++|.|.-. |..-.+.|.++||.++
T Consensus 68 PRkI~lMVkAG--~~VD-~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~Fv 124 (473)
T COG0362 68 PRKILLMVKAG--TPVD-AVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFV 124 (473)
T ss_pred CceEEEEEecC--CcHH-HHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEE
Confidence 211 222222 1111 11111 1 5568999999875 4444568999999876
No 406
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=75.49 E-value=5.5 Score=38.30 Aligned_cols=35 Identities=20% Similarity=0.287 Sum_probs=30.3
Q ss_pred CCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 012750 248 QAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 248 ~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs 282 (457)
.+++++++.|.| -|.+|+++++.|.++|++|+.+.
T Consensus 8 ~~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~ 43 (259)
T PRK08213 8 FDLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSA 43 (259)
T ss_pred hCcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEe
Confidence 457899999998 59999999999999999988543
No 407
>PRK06196 oxidoreductase; Provisional
Probab=75.38 E-value=5.3 Score=40.08 Aligned_cols=36 Identities=22% Similarity=0.381 Sum_probs=31.2
Q ss_pred CCCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 012750 247 GQAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 247 g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs 282 (457)
..++++++++|.|. |.+|+++++.|.+.|++|+.++
T Consensus 21 ~~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~ 57 (315)
T PRK06196 21 GHDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPA 57 (315)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 34578999999985 8999999999999999998654
No 408
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=75.35 E-value=4.2 Score=40.42 Aligned_cols=32 Identities=28% Similarity=0.510 Sum_probs=28.5
Q ss_pred CCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 012750 251 RDLTFVIQG-FGNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 251 ~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs 282 (457)
++++|.|.| .|-+|+++++.|.++|.+|+++.
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~ 35 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATV 35 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEE
Confidence 468999999 69999999999999999998665
No 409
>PRK07577 short chain dehydrogenase; Provisional
Probab=75.27 E-value=5.2 Score=37.62 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=28.7
Q ss_pred CCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEC
Q 012750 251 RDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSD 283 (457)
Q Consensus 251 ~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD 283 (457)
.++++.|.|. |.+|+.+++.|.++|++|+.+.-
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r 35 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIAR 35 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 5688999984 99999999999999999997653
No 410
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=75.27 E-value=4.5 Score=40.88 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=30.5
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 012750 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs 282 (457)
++++++|.|.|. |-+|+++++.|.++|.+|+++.
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~ 37 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGII 37 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEe
Confidence 478899999995 9999999999999999999765
No 411
>PLN02214 cinnamoyl-CoA reductase
Probab=75.21 E-value=4.7 Score=41.15 Aligned_cols=34 Identities=26% Similarity=0.464 Sum_probs=30.3
Q ss_pred CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEC
Q 012750 250 IRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSD 283 (457)
Q Consensus 250 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD 283 (457)
+++++|.|.|. |-+|+++++.|.++|.+|+++..
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r 42 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVR 42 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence 57889999996 99999999999999999997653
No 412
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=75.13 E-value=5.4 Score=38.39 Aligned_cols=33 Identities=15% Similarity=0.268 Sum_probs=29.4
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEE
Q 012750 249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAV 281 (457)
Q Consensus 249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaV 281 (457)
+++++++.|.| .|.+|..+++.|.++|++|+.+
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~ 45 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIIT 45 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 47899999998 5999999999999999999844
No 413
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=75.07 E-value=5.3 Score=38.59 Aligned_cols=33 Identities=12% Similarity=0.323 Sum_probs=29.4
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEE
Q 012750 249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAV 281 (457)
Q Consensus 249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaV 281 (457)
++++++++|.| -|.+|+.+++.|.+.|++|+.+
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~ 39 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNA 39 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEE
Confidence 47889999998 5999999999999999999844
No 414
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.06 E-value=5.2 Score=38.96 Aligned_cols=35 Identities=23% Similarity=0.428 Sum_probs=30.1
Q ss_pred CCCCCeEEEEec---ChHHHHHHHHHHHCCCEEEEEECC
Q 012750 249 AIRDLTFVIQGF---GNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 249 ~l~g~~vaIqGf---GnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
+++|++++|.|. +.+|..+|+.|.+.|++|+ +.+.
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~-~~~r 41 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLV-FTYA 41 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEE-EecC
Confidence 478999999997 5899999999999999988 4444
No 415
>PRK06398 aldose dehydrogenase; Validated
Probab=75.01 E-value=5.3 Score=38.71 Aligned_cols=34 Identities=21% Similarity=0.424 Sum_probs=30.0
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 012750 249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs 282 (457)
+++|+++.|.| -|.+|+.+++.|.+.|++|+.++
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~ 37 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFD 37 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEe
Confidence 47899999998 48999999999999999998554
No 416
>PRK06197 short chain dehydrogenase; Provisional
Probab=74.99 E-value=5 Score=39.96 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=30.5
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEC
Q 012750 249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSD 283 (457)
Q Consensus 249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD 283 (457)
++++++++|.| .|.+|+++++.|.++|++|+.++.
T Consensus 13 ~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r 48 (306)
T PRK06197 13 DQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVR 48 (306)
T ss_pred cCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 47899999998 499999999999999999986543
No 417
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=74.98 E-value=8.5 Score=39.93 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=27.9
Q ss_pred CeEEEEec-ChHHHHHHHHHHHC-CCEEEEEECCC
Q 012750 253 LTFVIQGF-GNVGSWAARLIHER-GGKVIAVSDIT 285 (457)
Q Consensus 253 ~~vaIqGf-GnVG~~~a~~L~~~-GakVVaVsD~~ 285 (457)
++|+|.|. |-||+.++++|.++ +.+++++.+++
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~ 35 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSR 35 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccc
Confidence 47999997 99999999999876 78998876653
No 418
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=74.95 E-value=3.7 Score=44.08 Aligned_cols=33 Identities=21% Similarity=0.177 Sum_probs=29.2
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
-+|++|.|.|+|.-|..++++|. .|++|+ |+|.
T Consensus 4 ~~~~~v~v~G~G~sG~a~~~~L~-~g~~v~-v~D~ 36 (454)
T PRK01368 4 HTKQKIGVFGLGKTGISVYEELQ-NKYDVI-VYDD 36 (454)
T ss_pred CCCCEEEEEeecHHHHHHHHHHh-CCCEEE-EECC
Confidence 35789999999999999999999 599987 8884
No 419
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=74.92 E-value=5.4 Score=38.65 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=30.5
Q ss_pred CCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750 248 QAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 248 ~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
.+++++++.|.| .|.+|..+++.|.++|++|+. .+.
T Consensus 6 ~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~-~~~ 42 (265)
T PRK07097 6 FSLKGKIALITGASYGIGFAIAKAYAKAGATIVF-NDI 42 (265)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEE-EeC
Confidence 357889999988 589999999999999999884 454
No 420
>PRK08265 short chain dehydrogenase; Provisional
Probab=74.80 E-value=5.7 Score=38.50 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=30.0
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
+++++++.|.|- |.+|+.+++.|.+.|++|+. .|.
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~-~~r 38 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAI-VDI 38 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEE-EeC
Confidence 467899999984 99999999999999999884 454
No 421
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=74.78 E-value=5.6 Score=38.46 Aligned_cols=33 Identities=12% Similarity=0.249 Sum_probs=28.8
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEE
Q 012750 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (457)
Q Consensus 249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (457)
+++++++.|.|- |.+|+.+++.|.+.|++|+.+
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~ 35 (262)
T TIGR03325 2 RLKGEVVLVTGGASGLGRAIVDRFVAEGARVAVL 35 (262)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 367899999984 899999999999999999854
No 422
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=74.69 E-value=5.4 Score=38.28 Aligned_cols=32 Identities=16% Similarity=0.315 Sum_probs=28.6
Q ss_pred CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEE
Q 012750 250 IRDLTFVIQG-FGNVGSWAARLIHERGGKVIAV 281 (457)
Q Consensus 250 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaV 281 (457)
++++++.|.| .|.+|..+++.|.++|++|+.+
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~ 36 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGARVVIA 36 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE
Confidence 6788999998 5999999999999999999854
No 423
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=74.66 E-value=4.3 Score=45.56 Aligned_cols=35 Identities=29% Similarity=0.284 Sum_probs=31.0
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
..|++|+|+|.|..|..+|..|.++|++|+ |.|..
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~-V~E~~ 359 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVT-VYDRH 359 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEE-EEecC
Confidence 368999999999999999999999999987 67653
No 424
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=74.65 E-value=4 Score=43.05 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=26.4
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEE
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAV 281 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaV 281 (457)
++|+|.|+|++|+.+++.|.+.|..|+.|
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vi 29 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVI 29 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence 47999999999999999999999999855
No 425
>PRK07062 short chain dehydrogenase; Provisional
Probab=74.51 E-value=5.7 Score=38.31 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=30.0
Q ss_pred CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEE
Q 012750 248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (457)
Q Consensus 248 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (457)
.+++|+++.|.|. |.+|+.+++.|.+.|++|+.+
T Consensus 4 ~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~ 38 (265)
T PRK07062 4 IQLEGRVAVVTGGSSGIGLATVELLLEAGASVAIC 38 (265)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEE
Confidence 4588999999985 889999999999999999844
No 426
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=74.46 E-value=6.5 Score=37.90 Aligned_cols=36 Identities=19% Similarity=0.177 Sum_probs=30.8
Q ss_pred CCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEC
Q 012750 248 QAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSD 283 (457)
Q Consensus 248 ~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD 283 (457)
.+++++++.|.| -|.+|+.+++.|.++|++|+.++.
T Consensus 3 ~~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~ 39 (261)
T PRK08936 3 SDLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYR 39 (261)
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 357899999998 589999999999999999985443
No 427
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=74.44 E-value=5.5 Score=39.84 Aligned_cols=34 Identities=26% Similarity=0.374 Sum_probs=30.1
Q ss_pred CCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750 251 RDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 251 ~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
.|++|.|.| .|-+|+++++.|.+.|++|+++.+.
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~ 38 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRD 38 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 578999998 5999999999999999999877654
No 428
>PRK08264 short chain dehydrogenase; Validated
Probab=74.44 E-value=5.5 Score=37.60 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=29.1
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCC-EEEEEE
Q 012750 249 AIRDLTFVIQG-FGNVGSWAARLIHERGG-KVIAVS 282 (457)
Q Consensus 249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~Ga-kVVaVs 282 (457)
+++++++.|.| .|.+|+.+++.|.++|+ +|+.+.
T Consensus 3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~ 38 (238)
T PRK08264 3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAA 38 (238)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEe
Confidence 36788999998 59999999999999999 887554
No 429
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.31 E-value=5.4 Score=39.18 Aligned_cols=34 Identities=12% Similarity=0.291 Sum_probs=29.5
Q ss_pred CCCCeEEEEecC---hHHHHHHHHHHHCCCEEEEEECC
Q 012750 250 IRDLTFVIQGFG---NVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 250 l~g~~vaIqGfG---nVG~~~a~~L~~~GakVVaVsD~ 284 (457)
++|++++|.|.+ .+|+.+|+.|.+.|++|+ +.+.
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vi-l~~r 40 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELA-FTYQ 40 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEE-EEec
Confidence 688999999986 699999999999999987 5544
No 430
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=74.22 E-value=4.7 Score=39.91 Aligned_cols=32 Identities=25% Similarity=0.232 Sum_probs=27.0
Q ss_pred eEEEEecChHHHHHHHHHHHCCCEEEEEECCCC
Q 012750 254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDITG 286 (457)
Q Consensus 254 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G 286 (457)
.|+|+|.|..|..+|..|.+.|.+|+ |.|.+.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~-i~E~~~ 34 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVT-IIERRP 34 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEE-EEESSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccc-cchhcc
Confidence 69999999999999999999999987 888753
No 431
>PRK07035 short chain dehydrogenase; Provisional
Probab=74.12 E-value=5.8 Score=37.86 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=30.0
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 012750 249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs 282 (457)
+++++++.|.| .|.+|.++++.|.+.|++|+.+.
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~ 39 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSS 39 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 47889999998 69999999999999999999653
No 432
>PRK07326 short chain dehydrogenase; Provisional
Probab=74.11 E-value=5.5 Score=37.51 Aligned_cols=32 Identities=22% Similarity=0.242 Sum_probs=28.2
Q ss_pred CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEE
Q 012750 250 IRDLTFVIQG-FGNVGSWAARLIHERGGKVIAV 281 (457)
Q Consensus 250 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaV 281 (457)
+.++++.|.| -|.+|+.+++.|.++|++|+.+
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~ 36 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAIT 36 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEe
Confidence 5678999998 5999999999999999998855
No 433
>PRK12746 short chain dehydrogenase; Provisional
Probab=74.05 E-value=6.3 Score=37.61 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=28.8
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEE
Q 012750 249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAV 281 (457)
Q Consensus 249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaV 281 (457)
+++++++.|.| .|.+|+++++.|.++|++|+.+
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~ 36 (254)
T PRK12746 3 NLDGKVALVTGASRGIGRAIAMRLANDGALVAIH 36 (254)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 36788999998 5999999999999999998743
No 434
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=74.03 E-value=8.3 Score=33.21 Aligned_cols=31 Identities=32% Similarity=0.378 Sum_probs=26.5
Q ss_pred eEEEEec-ChHHHHHHHHHHH-CCCEEEEEECC
Q 012750 254 TFVIQGF-GNVGSWAARLIHE-RGGKVIAVSDI 284 (457)
Q Consensus 254 ~vaIqGf-GnVG~~~a~~L~~-~GakVVaVsD~ 284 (457)
+++|+|. |.+|..+++.|.+ .+.++++++++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~ 33 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAAS 33 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEec
Confidence 5889994 9999999999988 58999999664
No 435
>PRK05866 short chain dehydrogenase; Provisional
Probab=74.01 E-value=6.1 Score=39.39 Aligned_cols=36 Identities=25% Similarity=0.404 Sum_probs=30.6
Q ss_pred CCCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 012750 247 GQAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 247 g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs 282 (457)
+..++++++.|.|. |.+|+.+++.|.++|++|+.++
T Consensus 35 ~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~ 71 (293)
T PRK05866 35 PVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVA 71 (293)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEE
Confidence 34578899999985 9999999999999999998543
No 436
>PRK08226 short chain dehydrogenase; Provisional
Probab=73.98 E-value=5.7 Score=38.20 Aligned_cols=34 Identities=24% Similarity=0.434 Sum_probs=29.5
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 012750 249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs 282 (457)
.++++++.|.| .|.+|+.+++.|.++|++|+.++
T Consensus 3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~ 37 (263)
T PRK08226 3 KLTGKTALITGALQGIGEGIARVFARHGANLILLD 37 (263)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEec
Confidence 36789999998 69999999999999999998553
No 437
>PRK07576 short chain dehydrogenase; Provisional
Probab=73.93 E-value=5.9 Score=38.53 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=30.0
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 012750 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs 282 (457)
+++++++.|.|- |.+|+.+++.|.+.|++|+.+.
T Consensus 6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~ 40 (264)
T PRK07576 6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVAS 40 (264)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 478899999985 8999999999999999998653
No 438
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=73.92 E-value=5.8 Score=37.39 Aligned_cols=34 Identities=26% Similarity=0.361 Sum_probs=29.5
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 012750 249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs 282 (457)
+++++++.|.| .|.+|+.+++.|.++|++|+.+.
T Consensus 2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~ 36 (235)
T PRK06550 2 EFMTKTVLITGAASGIGLAQARAFLAQGAQVYGVD 36 (235)
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 47889999998 59999999999999999998543
No 439
>PRK08818 prephenate dehydrogenase; Provisional
Probab=73.91 E-value=9.8 Score=40.06 Aligned_cols=33 Identities=33% Similarity=0.490 Sum_probs=27.6
Q ss_pred CCCeEEEEec-ChHHHHHHHHHHHC-CCEEEEEECC
Q 012750 251 RDLTFVIQGF-GNVGSWAARLIHER-GGKVIAVSDI 284 (457)
Q Consensus 251 ~g~~vaIqGf-GnVG~~~a~~L~~~-GakVVaVsD~ 284 (457)
...||.|+|+ |-+|+++|+.|.+. +.+|++ .|.
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g-~D~ 37 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIG-HDP 37 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEE-EcC
Confidence 4579999999 99999999999864 788875 454
No 440
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=73.89 E-value=6.8 Score=37.60 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=29.7
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 012750 249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs 282 (457)
.++++++.|.| .|.+|+.+++.|.++|++|+.+.
T Consensus 4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~ 38 (255)
T PRK06463 4 RFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLY 38 (255)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEe
Confidence 46789999998 59999999999999999998543
No 441
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=73.63 E-value=5.7 Score=37.67 Aligned_cols=32 Identities=31% Similarity=0.525 Sum_probs=28.4
Q ss_pred CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEE
Q 012750 250 IRDLTFVIQG-FGNVGSWAARLIHERGGKVIAV 281 (457)
Q Consensus 250 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaV 281 (457)
++++++.|.| -|.+|+.+++.|.+.|++|+.+
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~ 33 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVF 33 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEe
Confidence 4788999998 5999999999999999998854
No 442
>PRK07814 short chain dehydrogenase; Provisional
Probab=73.58 E-value=5.8 Score=38.42 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=30.0
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
+++++++.|.|. |.+|.++++.|.++|++|+.+ +.
T Consensus 7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~-~r 42 (263)
T PRK07814 7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIA-AR 42 (263)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE-eC
Confidence 478899999985 789999999999999999854 44
No 443
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=73.50 E-value=5.8 Score=41.97 Aligned_cols=35 Identities=26% Similarity=0.275 Sum_probs=31.4
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
+.+++|.|.|+|.-|..++++|.+.|++|+ ++|.+
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~-~~D~~ 38 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPR-VIDTR 38 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCeEE-EEcCC
Confidence 567899999999999999999999999987 68874
No 444
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=73.49 E-value=4.7 Score=37.62 Aligned_cols=32 Identities=28% Similarity=0.352 Sum_probs=27.3
Q ss_pred eEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 254 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
+|.|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 58999999999999999999998644477764
No 445
>PRK12937 short chain dehydrogenase; Provisional
Probab=73.49 E-value=6.8 Score=36.99 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=29.9
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEC
Q 012750 249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSD 283 (457)
Q Consensus 249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD 283 (457)
.++++++.|.| .|.+|+++++.|.++|++|+.+..
T Consensus 2 ~~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~ 37 (245)
T PRK12937 2 TLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYA 37 (245)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecC
Confidence 36788999998 599999999999999999885543
No 446
>PRK10637 cysG siroheme synthase; Provisional
Probab=73.46 E-value=4.3 Score=43.73 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=31.6
Q ss_pred CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 012750 248 QAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 248 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs 282 (457)
++++|++|.|+|.|+|+..=++.|.+.|++|+-||
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~vis 42 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNA 42 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEc
Confidence 46899999999999999998999999999998665
No 447
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=73.46 E-value=13 Score=38.20 Aligned_cols=36 Identities=17% Similarity=0.057 Sum_probs=29.1
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 250 IRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 250 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
.+|++|+|+|-|++|..+|..|.+.|.+-|.|.+..
T Consensus 170 ~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~ 205 (352)
T PRK12770 170 VEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR 205 (352)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence 458999999999999999999988898733355543
No 448
>PRK06914 short chain dehydrogenase; Provisional
Probab=73.46 E-value=6.4 Score=38.32 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=28.2
Q ss_pred CCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 012750 251 RDLTFVIQG-FGNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 251 ~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs 282 (457)
+++++.|.| .|.+|+.+++.|.++|++|++++
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~ 34 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATM 34 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEe
Confidence 567889988 59999999999999999999764
No 449
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=73.42 E-value=4.6 Score=40.19 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=26.3
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVs 282 (457)
++|+|.|.|+||..+|..|.+.|..|+.+.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~ 30 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLV 30 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEe
Confidence 479999999999999999999999887543
No 450
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=73.37 E-value=6.2 Score=35.51 Aligned_cols=32 Identities=38% Similarity=0.580 Sum_probs=25.8
Q ss_pred CeEEEEec-ChHHHHHHHHHHHCCC--EEEEEECCC
Q 012750 253 LTFVIQGF-GNVGSWAARLIHERGG--KVIAVSDIT 285 (457)
Q Consensus 253 ~~vaIqGf-GnVG~~~a~~L~~~Ga--kVVaVsD~~ 285 (457)
.+|+|+|. |+||+++|..|...+. .++ +.|.+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~-L~D~~ 35 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIV-LIDIN 35 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEE-EEESS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceE-EeccC
Confidence 47999999 9999999999987764 555 55653
No 451
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=73.16 E-value=6.9 Score=36.67 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=29.5
Q ss_pred CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750 250 IRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 250 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
++.+++.|.| .|.+|+.+++.|.++|++|+.++..
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 4567999998 5999999999999999998765554
No 452
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=73.05 E-value=5.2 Score=42.52 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=29.4
Q ss_pred CCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 252 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
+-+|.|.|.|..|..+|++|.+.|++|+ ++|..
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~-~~D~~ 38 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFA-VMDSR 38 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEE-EEeCC
Confidence 3479999999999999999999999987 78864
No 453
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=72.99 E-value=7.1 Score=37.04 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=29.8
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750 249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
+++++++.|.| .|.+|+++++.|.++|++|+.+.+.
T Consensus 3 ~~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~ 39 (252)
T PRK06077 3 SLKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKK 39 (252)
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 35688999998 5889999999999999998755443
No 454
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=72.86 E-value=5.1 Score=41.57 Aligned_cols=32 Identities=28% Similarity=0.409 Sum_probs=27.9
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
++|+|+|-|-+|..+|..|++.|.+|+ |.|..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~-vle~~ 32 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVT-VIDRQ 32 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 379999999999999999999999877 77653
No 455
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=72.72 E-value=1.2e+02 Score=31.09 Aligned_cols=149 Identities=18% Similarity=0.197 Sum_probs=86.9
Q ss_pred HHHHHHhhccCCCCcccC-----CCCCCCHHHHHHHHHHhhhhhC---CCC------ceecCcccCCCCCC-CCCcchHH
Q 012750 169 VFTQKIHDLIGIHTDIPA-----PDMGTNAQTMAWILDEYSKFHG---HSP------AVVTGKPIDLGGSL-GREAATGR 233 (457)
Q Consensus 169 ~f~~~l~~~iG~~~dipa-----pDvgT~~~~m~wi~d~~~~~~g---~~~------~~~tGkp~~~GGs~-gr~~aTg~ 233 (457)
+|-.++..+.|....+.. -..|=+-+|.+.+...|-.... ... .-..+.|+..+|+. +.-+.-+.
T Consensus 56 SFe~A~~~LGg~~i~l~~~~~s~~~kgEsi~Dta~vls~y~D~iviR~~~~~~~~~~a~~s~vPVINa~~g~~~HPtQ~L 135 (301)
T TIGR00670 56 SFETAMKRLGGDVVNFSDSETSSVAKGETLADTIKTLSGYSDAIVIRHPLEGAARLAAEVSEVPVINAGDGSNQHPTQTL 135 (301)
T ss_pred HHHHHHHHcCCcEEEcCCCCcccCCCCcCHHHHHHHHHHhCCEEEEECCchhHHHHHHhhCCCCEEeCCCCCCCCcHHHH
Confidence 688888888776543333 2334445778877777743211 111 12357788888763 23333333
Q ss_pred HHHHHHHHHHHHhCCCCCCCeEEEEec---ChHHHHHHHHHHHCCCEEEEEECCCCeeeCCCCCC-HHHHHHhHhhcC-C
Q 012750 234 GVVYATEALLAEHGQAIRDLTFVIQGF---GNVGSWAARLIHERGGKVIAVSDITGAVKNADGID-IHKLLAHKDKTG-S 308 (457)
Q Consensus 234 Gv~~~~~~~l~~~g~~l~g~~vaIqGf---GnVG~~~a~~L~~~GakVVaVsD~~G~iynp~GLD-i~~L~~~~~~~g-~ 308 (457)
.=++++++ +.| +++|++|+++|- +||....+..+...|+.|. ++ .|.|++ ++++.+..++.| .
T Consensus 136 aDl~Ti~e---~~g-~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~-~~-------~P~~~~~~~~~~~~~~~~G~~ 203 (301)
T TIGR00670 136 LDLYTIYE---EFG-RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVY-LI-------SPEELRMPKEILEELKAKGIK 203 (301)
T ss_pred HHHHHHHH---HhC-CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEE-EE-------CCccccCCHHHHHHHHHcCCE
Confidence 33444444 345 589999999998 5999999999999999987 33 456652 344444333321 2
Q ss_pred cccCCCCeecCCCcccccccceeeccc
Q 012750 309 LKDFDGGDSMEPSELLAHECDVLIPCA 335 (457)
Q Consensus 309 ~~~~~~~~~i~~~ell~~~~DIliPaA 335 (457)
+.-+ -++++.+. ++||++.-.
T Consensus 204 v~~~-----~d~~~a~~-~aDvvyt~~ 224 (301)
T TIGR00670 204 VRET-----ESLEEVID-EADVLYVTR 224 (301)
T ss_pred EEEE-----CCHHHHhC-CCCEEEECC
Confidence 2111 12223333 889988753
No 456
>PRK06182 short chain dehydrogenase; Validated
Probab=72.70 E-value=6.4 Score=38.31 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=28.2
Q ss_pred CCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 012750 251 RDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 251 ~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs 282 (457)
++++++|.|. |.+|+.+++.|.++|++|++++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~ 34 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAA 34 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 5789999994 9999999999999999998654
No 457
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=72.61 E-value=6.3 Score=37.83 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=30.1
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEECC
Q 012750 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
.++++++.|.|. |.+|+++++.|.++|++|+. .|.
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~-~~r 40 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVL-VDR 40 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEE-EeC
Confidence 378899999985 89999999999999999984 454
No 458
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=72.61 E-value=6.1 Score=38.12 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=29.5
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEE
Q 012750 249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAV 281 (457)
Q Consensus 249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaV 281 (457)
+++|+++.|.| -+.+|+.+++.|.+.|++|+.+
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~ 38 (251)
T PRK12481 5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGV 38 (251)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEe
Confidence 47899999998 5899999999999999999854
No 459
>PRK08013 oxidoreductase; Provisional
Probab=72.57 E-value=5.1 Score=41.72 Aligned_cols=33 Identities=30% Similarity=0.284 Sum_probs=29.3
Q ss_pred CCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 252 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
...|+|+|.|.+|..+|..|.+.|.+|+ |.|..
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~-viE~~ 35 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVA-VLEQR 35 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEE-EEeCC
Confidence 3579999999999999999999999987 77764
No 460
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=72.56 E-value=6.5 Score=40.76 Aligned_cols=33 Identities=27% Similarity=0.504 Sum_probs=29.1
Q ss_pred CCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEC
Q 012750 251 RDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSD 283 (457)
Q Consensus 251 ~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD 283 (457)
.+++|.|.| -|-+|+|+++.|+++|++|.|...
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR 38 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVR 38 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEc
Confidence 678999999 599999999999999999986543
No 461
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=72.52 E-value=40 Score=37.15 Aligned_cols=175 Identities=20% Similarity=0.257 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCcccCCCCCCCHHHHHHHHHHhhhhhCCCCceecCcccCCCCCCCCCcchHHHHHHHH
Q 012750 160 NSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYAT 239 (457)
Q Consensus 160 ~~ele~~~r~f~~~l~~~iG~~~dipapDvgT~~~~m~wi~d~~~~~~g~~~~~~tGkp~~~GGs~gr~~aTg~Gv~~~~ 239 (457)
-.|-..+...|+.++..-.|+..-|-=+|+++.-.- -+.+.|+. .. -++. +.-.-||-=+..++
T Consensus 234 g~eYd~~~dEFm~Av~~~yG~~~lIqFEDF~~~nAf--rlL~kYr~---~~-c~FN----------DDIQGTaaValAgl 297 (582)
T KOG1257|consen 234 GKEYDEFLDEFMEAVVQRYGPNTLIQFEDFANHNAF--RLLEKYRN---KY-CMFN----------DDIQGTAAVALAGL 297 (582)
T ss_pred ccHHHHHHHHHHHHHHHHhCcceEEEehhccchhHH--HHHHHhcc---cc-ceec----------ccccchhHHHHHHH
Confidence 345567899999999999999877878899874211 11233432 11 1111 11233555556677
Q ss_pred HHHHHHhCCCCCCCeEEEEecChHHHHHHHHHH----HCCC-------EEEEEECCCCeeeCCC--CCCHHHHHHhHhhc
Q 012750 240 EALLAEHGQAIRDLTFVIQGFGNVGSWAARLIH----ERGG-------KVIAVSDITGAVKNAD--GIDIHKLLAHKDKT 306 (457)
Q Consensus 240 ~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~----~~Ga-------kVVaVsD~~G~iynp~--GLDi~~L~~~~~~~ 306 (457)
-.+++..+..++..+|.++|.|..|..+|+++. +.|. ||- ..|++|-|.... .++.... .+.++
T Consensus 298 laa~rit~~~lsd~~ilf~GAG~A~~GIA~l~v~~m~~~Gl~~eeA~kkIw-lvD~~GLi~~~r~~~l~~~~~-~fAk~- 374 (582)
T KOG1257|consen 298 LAALRITGKPLSDHVILFLGAGEAALGIANLIVMAMVKEGLSEEEARKKIW-LVDSKGLITKGRKASLTEEKK-PFAKD- 374 (582)
T ss_pred HHHHHHhCCccccceEEEecCchHHhhHHHHHHHHHHHcCCCHHHHhccEE-EEecCceeeccccCCCChhhc-ccccc-
Confidence 778888899999999999999999999998764 3453 554 677777665432 2221111 00000
Q ss_pred CCcccCCCCeec-CCCccc-ccccceeecccc-CCccccccccc---ccceEEEecCCCCC
Q 012750 307 GSLKDFDGGDSM-EPSELL-AHECDVLIPCAL-GGVLKRENAAD---VKAKFIIEAANHPT 361 (457)
Q Consensus 307 g~~~~~~~~~~i-~~~ell-~~~~DIliPaA~-~~~It~~na~~---i~akiIvEgAN~p~ 361 (457)
.+++ +-.++. .++..|||=|+. ++..|++-.+. ...|=|+=+=-+|+
T Consensus 375 --------~~~~~~L~e~V~~vKPtvLiG~S~~~g~Fteevl~~Ma~~~erPiIFalSNPT 427 (582)
T KOG1257|consen 375 --------HEEIKDLEEAVKEVKPTVLIGASGVGGAFTEEVLRAMAKSNERPIIFALSNPT 427 (582)
T ss_pred --------ChHHHHHHHHHHhcCCcEEEecccCCccCCHHHHHHHHhcCCCceEEecCCCc
Confidence 0111 112222 568899998874 57888765433 34443443444464
No 462
>PLN00198 anthocyanidin reductase; Provisional
Probab=72.52 E-value=6 Score=39.92 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=29.9
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 012750 249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs 282 (457)
..++++|.|.| .|-+|+++++.|.++|++|+++.
T Consensus 6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~ 40 (338)
T PLN00198 6 PTGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTV 40 (338)
T ss_pred CCCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEE
Confidence 35788999998 79999999999999999998654
No 463
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=72.49 E-value=5.4 Score=41.25 Aligned_cols=32 Identities=25% Similarity=0.234 Sum_probs=28.9
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
.+|+|+|.|.+|..+|..|.+.|.+|+ |.|..
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~-l~E~~ 35 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVA-VIEGG 35 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEE-EEcCC
Confidence 479999999999999999999999998 77754
No 464
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=72.48 E-value=5.9 Score=38.06 Aligned_cols=34 Identities=12% Similarity=0.241 Sum_probs=29.2
Q ss_pred CCCCCeEEEEec---ChHHHHHHHHHHHCCCEEEEEE
Q 012750 249 AIRDLTFVIQGF---GNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 249 ~l~g~~vaIqGf---GnVG~~~a~~L~~~GakVVaVs 282 (457)
+++++++.|.|. |.+|..+++.|.++|++|+.++
T Consensus 2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~ 38 (256)
T PRK12748 2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTY 38 (256)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEc
Confidence 468899999996 4799999999999999998553
No 465
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=72.45 E-value=6.4 Score=36.14 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=30.1
Q ss_pred eEEEEecChHHHHHHHHHHHCCCEEEEEECCCC
Q 012750 254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDITG 286 (457)
Q Consensus 254 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G 286 (457)
+++|.|.|+.|+.+++.|.+.|.+++++.|.+-
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~g~~vvgfid~~~ 33 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDSGWEIVGFLDDNP 33 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCEEEEEEcCCc
Confidence 478999999999999999999999999998763
No 466
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=72.42 E-value=5.1 Score=41.63 Aligned_cols=31 Identities=29% Similarity=0.306 Sum_probs=27.9
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
.+|+|+|-|-+|..+|..|++.|.+|+ |-|.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~-vle~ 32 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVT-VFDR 32 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEE-EEeC
Confidence 379999999999999999999999987 7765
No 467
>PRK08017 oxidoreductase; Provisional
Probab=72.41 E-value=6 Score=37.76 Aligned_cols=30 Identities=30% Similarity=0.419 Sum_probs=26.8
Q ss_pred CeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 012750 253 LTFVIQGF-GNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 253 ~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs 282 (457)
++++|.|. |.+|+.+++.|.++|++|+.+.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~ 33 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAAC 33 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 57999997 9999999999999999998654
No 468
>PRK05872 short chain dehydrogenase; Provisional
Probab=72.41 E-value=6.9 Score=38.93 Aligned_cols=33 Identities=30% Similarity=0.494 Sum_probs=29.3
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEE
Q 012750 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (457)
Q Consensus 249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (457)
+++|+++.|.|. |.+|..+++.|.++|++|+.+
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~ 39 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGAKLALV 39 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 478999999985 999999999999999998844
No 469
>PRK06114 short chain dehydrogenase; Provisional
Probab=72.31 E-value=6.9 Score=37.64 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=30.2
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750 249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
+++++++.|.| .|.+|+.+++.|.+.|++|+ +.+.
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~-~~~r 40 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGADVA-LFDL 40 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEeC
Confidence 47899999998 58999999999999999998 4554
No 470
>PRK08507 prephenate dehydrogenase; Validated
Probab=72.31 E-value=5.8 Score=39.33 Aligned_cols=69 Identities=23% Similarity=0.290 Sum_probs=41.6
Q ss_pred CeEEEEecChHHHHHHHHHHHCCC--EEEEEECCCCeeeCCCCCCHHHHHHhHhhcCCcccCCCCeecCCCcccccccce
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGG--KVIAVSDITGAVKNADGIDIHKLLAHKDKTGSLKDFDGGDSMEPSELLAHECDV 330 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~~G~iynp~GLDi~~L~~~~~~~g~~~~~~~~~~i~~~ell~~~~DI 330 (457)
++|.|+|.|++|+.+++.|.+.|. +|+ +.|.+ .+.+.... +.|..... .+..++. +||+
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~-~~d~~----------~~~~~~~~-~~g~~~~~-----~~~~~~~--~aD~ 61 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVY-GYDHN----------ELHLKKAL-ELGLVDEI-----VSFEELK--KCDV 61 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEE-EEcCC----------HHHHHHHH-HCCCCccc-----CCHHHHh--cCCE
Confidence 379999999999999999999885 555 33432 23333222 22221111 1233433 4999
Q ss_pred eeccccCCcc
Q 012750 331 LIPCALGGVL 340 (457)
Q Consensus 331 liPaA~~~~I 340 (457)
+|-|.....+
T Consensus 62 Vilavp~~~~ 71 (275)
T PRK08507 62 IFLAIPVDAI 71 (275)
T ss_pred EEEeCcHHHH
Confidence 9998765543
No 471
>PRK06500 short chain dehydrogenase; Provisional
Probab=72.29 E-value=6.1 Score=37.42 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=28.7
Q ss_pred CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEE
Q 012750 250 IRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (457)
Q Consensus 250 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (457)
++++++.|.|. |.+|+.+++.|.++|++|+.+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~ 36 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGARVAIT 36 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEe
Confidence 67889999985 999999999999999999854
No 472
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=72.27 E-value=7.3 Score=37.06 Aligned_cols=35 Identities=26% Similarity=0.272 Sum_probs=30.6
Q ss_pred CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 012750 248 QAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 248 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs 282 (457)
.+++++++.|.|- |.+|+.+++.|.++|++|+.+.
T Consensus 4 ~~~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~ 39 (252)
T PRK08220 4 MDFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFD 39 (252)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 4578899999984 8899999999999999998654
No 473
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=72.26 E-value=4.9 Score=42.41 Aligned_cols=31 Identities=35% Similarity=0.748 Sum_probs=28.0
Q ss_pred eEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 254 TFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 254 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
+|.|.|+|..|..+|++|.++|++|. ++|..
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~-~sD~~ 31 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVT-VTDLK 31 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEE-EEeCC
Confidence 47899999999999999999999987 78864
No 474
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=72.21 E-value=6.2 Score=42.21 Aligned_cols=37 Identities=32% Similarity=0.485 Sum_probs=32.0
Q ss_pred hCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 012750 246 HGQAIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 246 ~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs 282 (457)
+|..-+.+||.|.| -|-||+++++.|.++|.+|+++.
T Consensus 114 ~~~~~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ld 151 (436)
T PLN02166 114 VGIGRKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVID 151 (436)
T ss_pred cccccCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEe
Confidence 35566788999998 59999999999999999999764
No 475
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=72.10 E-value=12 Score=38.31 Aligned_cols=42 Identities=26% Similarity=0.374 Sum_probs=33.8
Q ss_pred HHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750 243 LAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 243 l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
+...+....|.+|.|.|.|.||..+++++...|++|+.+++.
T Consensus 172 l~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~ 213 (357)
T PLN02514 172 LSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSS 213 (357)
T ss_pred HHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCC
Confidence 334444457899999999999999999999999998876543
No 476
>PRK09242 tropinone reductase; Provisional
Probab=72.09 E-value=6.6 Score=37.69 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=29.8
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 012750 249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs 282 (457)
.++++++.|.| .|.+|+.+++.|.+.|++|+.++
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~ 40 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVA 40 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEe
Confidence 47889999998 58999999999999999988553
No 477
>PRK07825 short chain dehydrogenase; Provisional
Probab=72.09 E-value=7.2 Score=37.84 Aligned_cols=33 Identities=24% Similarity=0.293 Sum_probs=28.7
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEE
Q 012750 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAV 281 (457)
Q Consensus 249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaV 281 (457)
+++++++.|.|. |.+|+.+++.|.++|++|+.+
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~ 35 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARALAALGARVAIG 35 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 467889999985 999999999999999998743
No 478
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=71.81 E-value=5.1 Score=43.53 Aligned_cols=31 Identities=26% Similarity=0.101 Sum_probs=27.6
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
++|+|+|.|++|+..|..|...|.+|+ +.|.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~-v~D~ 35 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVA-VFDP 35 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEE-EEeC
Confidence 479999999999999999999999887 5565
No 479
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=71.66 E-value=7 Score=34.64 Aligned_cols=30 Identities=33% Similarity=0.423 Sum_probs=26.3
Q ss_pred EEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750 255 FVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 255 vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
|+|.|.|.+|...|-.|++.|..|.-++..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRS 30 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEcc
Confidence 689999999999999999999998866543
No 480
>PRK07063 short chain dehydrogenase; Provisional
Probab=71.65 E-value=6.8 Score=37.65 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=30.0
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEECC
Q 012750 249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
.++++++.|.| .|.+|+.+++.|.++|++|+. .+.
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~-~~r 39 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVAL-ADL 39 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEE-EeC
Confidence 37889999998 589999999999999999884 444
No 481
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=71.60 E-value=8.5 Score=38.98 Aligned_cols=116 Identities=16% Similarity=0.187 Sum_probs=65.1
Q ss_pred eEEEEec-ChHHHHHHHHHHHCCCEEEEE-ECCCCeeeCCCCCCHHHHHHhHhhcCCcccC-CCCeecCCCcccccccc-
Q 012750 254 TFVIQGF-GNVGSWAARLIHERGGKVIAV-SDITGAVKNADGIDIHKLLAHKDKTGSLKDF-DGGDSMEPSELLAHECD- 329 (457)
Q Consensus 254 ~vaIqGf-GnVG~~~a~~L~~~GakVVaV-sD~~G~iynp~GLDi~~L~~~~~~~g~~~~~-~~~~~i~~~ell~~~~D- 329 (457)
+|+|-|+ |++|+.+++.+.+.+..+|+. .|..+ .|-|+.++... .+.-. |+...-+.+++++..+|
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~~~~~~~-----~~~~~~~~~g~-----~v~v~~~~~~~~~l~~~~~~~~d~ 71 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAAGLEIVPTSFGGEE-----EAENEAEVAGK-----EILLHGPSEREARIGEVFAKYPEL 71 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcCCCEEEeeEccccc-----cccchhhhccc-----ceeeeccccccccHHHHHhhcCCE
Confidence 7899995 999999999988899999987 45432 34454444221 11000 11011122345555588
Q ss_pred eeeccccCCccccccccc---ccceEEEecCCCCCCHHHHHHHHh---CCCeEeccccc
Q 012750 330 VLIPCALGGVLKRENAAD---VKAKFIIEAANHPTDPEADEILSK---RGVTILPDIYA 382 (457)
Q Consensus 330 IliPaA~~~~It~~na~~---i~akiIvEgAN~p~t~~a~~iL~~---rGI~viPD~la 382 (457)
|+|.-+...... +|+.. -+..+|++ .=+ .|++-.+.|.+ -++++.|-|..
T Consensus 72 VvIDFT~P~~~~-~n~~~~~~~gv~~ViG-TTG-~~~~~~~~l~~~~~i~~l~apNfSi 127 (275)
T TIGR02130 72 ICIDYTHPSAVN-DNAAFYGKHGIPFVMG-TTG-GDREALAKLVADAKHPAVIAPNMAK 127 (275)
T ss_pred EEEECCChHHHH-HHHHHHHHCCCCEEEc-CCC-CCHHHHHHHHHhcCCCEEEECcccH
Confidence 999887655433 34433 35566663 333 34443333333 45667776643
No 482
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=71.51 E-value=5.9 Score=40.86 Aligned_cols=31 Identities=29% Similarity=0.223 Sum_probs=27.9
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECC
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 284 (457)
++|+|+|.|.+|+..|..++..|..|+ +.|.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~-l~D~ 38 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVV-AWDP 38 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEE-EEeC
Confidence 589999999999999999999999998 5565
No 483
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=71.43 E-value=3.9 Score=46.48 Aligned_cols=32 Identities=28% Similarity=0.253 Sum_probs=27.2
Q ss_pred CeEEEEecChHHHHHHHHHH-HCCCEEEEEECCC
Q 012750 253 LTFVIQGFGNVGSWAARLIH-ERGGKVIAVSDIT 285 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~-~~GakVVaVsD~~ 285 (457)
++|+|+|.|.+|+..|..++ ..|..|+ +.|.+
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~-l~d~~ 337 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVR-IKDIN 337 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEE-EEeCC
Confidence 47999999999999999887 5899987 66653
No 484
>PRK06753 hypothetical protein; Provisional
Probab=71.38 E-value=5.4 Score=40.73 Aligned_cols=32 Identities=34% Similarity=0.403 Sum_probs=28.3
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
++|+|+|.|.+|..+|..|.+.|.+|+ |-+.+
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~-v~E~~ 32 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVK-VFEKN 32 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEE-EEecC
Confidence 479999999999999999999999987 77643
No 485
>PRK07856 short chain dehydrogenase; Provisional
Probab=71.36 E-value=7.9 Score=37.09 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=29.7
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 012750 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs 282 (457)
+++++++.|.|. |.+|+.+++.|.+.|++|+.++
T Consensus 3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~ 37 (252)
T PRK07856 3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCG 37 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 578999999985 8999999999999999998543
No 486
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=71.33 E-value=6.4 Score=40.89 Aligned_cols=33 Identities=24% Similarity=0.208 Sum_probs=29.8
Q ss_pred CCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 252 DLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 252 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
...|+|+|.|.+|..+|..|.+.|.+|+ |.|..
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~-l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVT-LLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEE-EEccC
Confidence 3579999999999999999999999987 88876
No 487
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=71.26 E-value=6.1 Score=40.23 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=30.6
Q ss_pred CCCCCCCeEEEEec---ChHHHHHHHHHHHCCCEEEE
Q 012750 247 GQAIRDLTFVIQGF---GNVGSWAARLIHERGGKVIA 280 (457)
Q Consensus 247 g~~l~g~~vaIqGf---GnVG~~~a~~L~~~GakVVa 280 (457)
+.+++|+++.|.|. ..+|..+|+.|.+.|++||.
T Consensus 4 ~~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~ 40 (303)
T PLN02730 4 PIDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV 40 (303)
T ss_pred CcCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE
Confidence 45689999999998 66999999999999999985
No 488
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=71.20 E-value=7.2 Score=40.87 Aligned_cols=36 Identities=31% Similarity=0.577 Sum_probs=31.7
Q ss_pred CCCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 012750 247 GQAIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 247 g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs 282 (457)
+...++++|.|.|. |.+|+++++.|.++|++|++++
T Consensus 55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~ 91 (390)
T PLN02657 55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVA 91 (390)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEE
Confidence 45578899999985 9999999999999999999765
No 489
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=71.10 E-value=7.7 Score=40.28 Aligned_cols=43 Identities=23% Similarity=0.300 Sum_probs=37.3
Q ss_pred HHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 242 LLAEHGQAIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 242 ~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
.|++.|.. .|+++.|.|.|-+|.-+.++-...|.+|++|+-++
T Consensus 173 pLk~~g~~-pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~ 215 (360)
T KOG0023|consen 173 PLKRSGLG-PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSS 215 (360)
T ss_pred hhHHcCCC-CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCc
Confidence 45667888 99999999999999988888888999999888663
No 490
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.10 E-value=6.7 Score=37.90 Aligned_cols=33 Identities=15% Similarity=0.385 Sum_probs=29.1
Q ss_pred CCCCCeEEEEec---ChHHHHHHHHHHHCCCEEEEE
Q 012750 249 AIRDLTFVIQGF---GNVGSWAARLIHERGGKVIAV 281 (457)
Q Consensus 249 ~l~g~~vaIqGf---GnVG~~~a~~L~~~GakVVaV 281 (457)
.++|+++.|.|. +.+|+.+|+.|.++|++|+.+
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~ 38 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFT 38 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEE
Confidence 478999999997 479999999999999999843
No 491
>PRK05993 short chain dehydrogenase; Provisional
Probab=70.99 E-value=7 Score=38.28 Aligned_cols=31 Identities=26% Similarity=0.545 Sum_probs=27.4
Q ss_pred CCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 012750 252 DLTFVIQGF-GNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 252 g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs 282 (457)
++++.|.|. |.+|+++++.|.++|++|+.++
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~ 35 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWRVFATC 35 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEE
Confidence 578999986 9999999999999999998653
No 492
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=70.96 E-value=5.4 Score=40.40 Aligned_cols=31 Identities=29% Similarity=0.316 Sum_probs=27.6
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEC
Q 012750 253 LTFVIQGFGNVGSWAARLIHERGGKVIAVSD 283 (457)
Q Consensus 253 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD 283 (457)
++|+|.|.|.||+.++-+|.+.|..|+-|.-
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r 33 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILR 33 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEe
Confidence 5899999999999999999999998886654
No 493
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=70.79 E-value=6.9 Score=38.70 Aligned_cols=35 Identities=14% Similarity=0.240 Sum_probs=29.7
Q ss_pred CCCCeEEEEec---ChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 250 IRDLTFVIQGF---GNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 250 l~g~~vaIqGf---GnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
++|+++.|.|. +.+|+.+|+.|.+.|++|+ +++.+
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vi-l~~r~ 40 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQGAELA-FTYLN 40 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEE-EEecC
Confidence 57899999997 4799999999999999988 55553
No 494
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=70.65 E-value=5.8 Score=40.80 Aligned_cols=34 Identities=21% Similarity=0.203 Sum_probs=29.5
Q ss_pred CCCeEEEEecChHHHHHHHHHHHCCCEEEEEECCC
Q 012750 251 RDLTFVIQGFGNVGSWAARLIHERGGKVIAVSDIT 285 (457)
Q Consensus 251 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 285 (457)
+...|+|+|.|.+|..+|..|.++|.+|+ |.|..
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~G~~v~-liE~~ 39 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARAGASVA-LVAPE 39 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCeEE-EEeCC
Confidence 34579999999999999999999999987 77764
No 495
>PRK07478 short chain dehydrogenase; Provisional
Probab=70.42 E-value=7.9 Score=37.06 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=29.4
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 012750 249 AIRDLTFVIQGF-GNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 249 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs 282 (457)
+++++++.|.|. |.+|..+++.|.+.|++|+.++
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~ 37 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGA 37 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEe
Confidence 467889999984 8999999999999999988543
No 496
>PRK05854 short chain dehydrogenase; Provisional
Probab=70.30 E-value=7.6 Score=39.10 Aligned_cols=34 Identities=24% Similarity=0.273 Sum_probs=29.9
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 012750 249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAVS 282 (457)
Q Consensus 249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs 282 (457)
+++|++++|.| -+.+|..+|+.|.+.|++|+.++
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~ 45 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPV 45 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEe
Confidence 57899999998 48899999999999999998543
No 497
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=70.29 E-value=6.5 Score=39.67 Aligned_cols=32 Identities=28% Similarity=0.308 Sum_probs=26.4
Q ss_pred CCeEEEEecChHHHHHHHHHHHCCC--EEEEEECC
Q 012750 252 DLTFVIQGFGNVGSWAARLIHERGG--KVIAVSDI 284 (457)
Q Consensus 252 g~~vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~ 284 (457)
-.+|+|+|+|++|+.+++.|.+.|. +|+ +.|.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~-~~dr 39 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIV-GADR 39 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEE-EEEC
Confidence 3689999999999999999998885 555 4555
No 498
>PLN02253 xanthoxin dehydrogenase
Probab=70.28 E-value=7.9 Score=37.74 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=29.1
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEE
Q 012750 249 AIRDLTFVIQG-FGNVGSWAARLIHERGGKVIAV 281 (457)
Q Consensus 249 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaV 281 (457)
.++++++.|.| -|.+|+++++.|.+.|++|+.+
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~ 48 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGAKVCIV 48 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEE
Confidence 47889999998 5899999999999999999854
No 499
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=70.26 E-value=7.2 Score=37.97 Aligned_cols=34 Identities=15% Similarity=0.222 Sum_probs=28.8
Q ss_pred CCCCeEEEEecC---hHHHHHHHHHHHCCCEEEEEECC
Q 012750 250 IRDLTFVIQGFG---NVGSWAARLIHERGGKVIAVSDI 284 (457)
Q Consensus 250 l~g~~vaIqGfG---nVG~~~a~~L~~~GakVVaVsD~ 284 (457)
++|+++.|.|.+ -+|..+|+.|.+.|++|+ +.+.
T Consensus 6 ~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~-~~~r 42 (260)
T PRK06603 6 LQGKKGLITGIANNMSISWAIAQLAKKHGAELW-FTYQ 42 (260)
T ss_pred cCCcEEEEECCCCCcchHHHHHHHHHHcCCEEE-EEeC
Confidence 678999999986 499999999999999987 4444
No 500
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=70.25 E-value=36 Score=36.17 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=31.3
Q ss_pred CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEC
Q 012750 249 AIRDLTFVIQGFGNVGSWAARLIHERGGKVIAVSD 283 (457)
Q Consensus 249 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD 283 (457)
.++|++|+|.|.......++++|.+.|..|+.+.-
T Consensus 296 ~l~gk~v~i~~~~~~~~~l~~~L~e~G~~v~~v~~ 330 (428)
T cd01965 296 YLGGKRVAIAGDPDLLLGLSRFLLEMGAEPVAAVT 330 (428)
T ss_pred HhcCCEEEEEcChHHHHHHHHHHHHcCCcceEEEE
Confidence 47899999999999999999999999999987654
Done!