Citrus Sinensis ID: 012753

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------
MAVDHSLELADGSNDDDGHLRTGTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLNLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTFSFICLLVTIIGLIGSIEGLISAKLG
ccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHcEEEEEEEcccHHHHHcccccccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHEEEEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHcccccEEHHHHHHccccccccccccEEEEEEHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
ccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcHHHHHHEHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
mavdhsleladgsndddghlrtgTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLadcyrspdpingkrnrsYIDAVRLNLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMraiqksncyhreghnapcaygdtkhmLLFGAVQVVMsqipdfhnMEWLSVIAAIMSFAYSFIGFGLGFAKVIEngrikgsiagvptaNLADKLWLAFQALGDIAFAYPYSIILLEIQdtlkspppenktmKMASMISIFITTFFYLCcgcfgyaafgndtpgnlltgfgfyepywliDLANACIVLHLVGGYQIFSQPVFAFVERWftrkypssgfvnnfytfklpllpplrvNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVlgalnfwplaiyfPVEMYFVQKKIGAWTRKWIVLRTFSFICLLVTIIGLIGSIEGLISAKLG
mavdhsleladgsndddghLRTGTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRspdpingkrnrSYIDAVRLNLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTFSFICLLVTIIGLIGSIEGLISAKLG
MAVDHSLELADGSNDDDGHLRTGTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLNLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTFSFICLLVTiigligsieglisAKLG
********************RTGTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLNLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDT*************ASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTFSFICLLVTIIGLIGSIEGLI*****
***********************TLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLNLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTFSFICLLVTIIGLIGSIEGLISAKL*
MAVDHSLELADGSNDDDGHLRTGTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLNLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTFSFICLLVTIIGLIGSIEGLISAKLG
*************NDDDGHLRTGTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLNLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTFSFICLLVTIIGLIGSIEGLISAKLG
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MAVDHSLELADGSNDDDGHLRTGTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLNLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTFSFICLLVTIIGLIGSIEGLISAKLG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query457 2.2.26 [Sep-21-2011]
Q9FF99467 Probable amino acid perme yes no 0.967 0.946 0.637 1e-159
Q39134476 Amino acid permease 3 OS= no no 0.960 0.922 0.545 1e-147
Q38967493 Amino acid permease 2 OS= no no 0.958 0.888 0.527 1e-145
Q9FN04466 Amino acid permease 4 OS= no no 0.958 0.939 0.536 1e-144
O80592475 Amino acid permease 8 OS= no no 0.982 0.945 0.534 1e-143
Q42400485 Amino acid permease 1 OS= no no 0.962 0.907 0.529 1e-142
P92934481 Amino acid permease 6 OS= no no 0.986 0.937 0.516 1e-140
Q8GUM3480 Amino acid permease 5 OS= no no 0.967 0.920 0.507 1e-137
O22719451 Lysine histidine transpor no no 0.905 0.917 0.274 2e-37
Q9FKS8446 Lysine histidine transpor no no 0.835 0.856 0.275 1e-34
>sp|Q9FF99|AAP7_ARATH Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=1 SV=1 Back     alignment and function desciption
 Score =  560 bits (1444), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 285/447 (63%), Positives = 353/447 (78%), Gaps = 5/447 (1%)

Query: 16  DDGHLRTGTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLA 75
           D    RTGTL + VAHIIT VIG+GVLSLAW+TA+LGWIAGPA+L+ FA VT +S+FLL+
Sbjct: 21  DSVTARTGTLWTAVAHIITGVIGAGVLSLAWATAELGWIAGPAALIAFAGVTLLSAFLLS 80

Query: 76  DCYRSPDPINGK-RNRSYIDAVRLNLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAI 134
           DCYR PDP NG  R  SY  AV+L LGK     CG++  ++ +G  +AY I  +T  RAI
Sbjct: 81  DCYRFPDPNNGPLRLNSYSQAVKLYLGKKNEIVCGVVVYISLFGCGIAYTIVIATCSRAI 140

Query: 135 QKSNCYHREGHNAPCAYGDTKH--MLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSF 192
            KSNCYHR GHNA C+YGD  +  M+LFG  Q+ MSQIP+FHNM WLS++AAIMSF YSF
Sbjct: 141 MKSNCYHRNGHNATCSYGDNNNYFMVLFGLTQIFMSQIPNFHNMVWLSLVAAIMSFTYSF 200

Query: 193 IGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLK 252
           IG GL   K+IEN +I+GSI G+P  N  +K+W+ FQALG+IAF+YP+SIILLEIQDTL+
Sbjct: 201 IGIGLALGKIIENRKIEGSIRGIPAENRGEKVWIVFQALGNIAFSYPFSIILLEIQDTLR 260

Query: 253 SPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLAN 312
           SPP E +TMK AS +++FI TFF+ CCGCFGYAAFG+ TPGNLLTGFGFYEP+WL+D AN
Sbjct: 261 SPPAEKQTMKKASTVAVFIQTFFFFCCGCFGYAAFGDSTPGNLLTGFGFYEPFWLVDFAN 320

Query: 313 ACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLL--PPLRVNILRLC 370
           ACIVLHLVGGYQ++SQP+FA  ER  T+KYP + F+  FY FKLPLL    +R+N +R+C
Sbjct: 321 ACIVLHLVGGYQVYSQPIFAAAERSLTKKYPENKFIARFYGFKLPLLRGETVRLNPMRMC 380

Query: 371 FRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLR 430
            RT YV+ TT VA++FPYFN+VLGV+GAL FWPLA+YFPVEM  +QKKI +WTR W++LR
Sbjct: 381 LRTMYVLITTGVAVMFPYFNEVLGVVGALAFWPLAVYFPVEMCILQKKIRSWTRPWLLLR 440

Query: 431 TFSFICLLVTIIGLIGSIEGLISAKLG 457
            FSF+CLLV ++ L+GSI GL+ AK G
Sbjct: 441 GFSFVCLLVCLLSLVGSIYGLVGAKFG 467
Amino acid-proton symporter. Stereospecific transporter with a broad specificity for neutral amino acids.
Arabidopsis thaliana (taxid: 3702)
>sp|Q39134|AAP3_ARATH Amino acid permease 3 OS=Arabidopsis thaliana GN=AAP3 PE=1 SV=2 Back     alignment and function description
>sp|Q38967|AAP2_ARATH Amino acid permease 2 OS=Arabidopsis thaliana GN=AAP2 PE=1 SV=1 Back     alignment and function description
>sp|Q9FN04|AAP4_ARATH Amino acid permease 4 OS=Arabidopsis thaliana GN=AAP4 PE=1 SV=1 Back     alignment and function description
>sp|O80592|AAP8_ARATH Amino acid permease 8 OS=Arabidopsis thaliana GN=AAP8 PE=1 SV=1 Back     alignment and function description
>sp|Q42400|AAP1_ARATH Amino acid permease 1 OS=Arabidopsis thaliana GN=AAP1 PE=1 SV=1 Back     alignment and function description
>sp|P92934|AAP6_ARATH Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1 Back     alignment and function description
>sp|Q8GUM3|AAP5_ARATH Amino acid permease 5 OS=Arabidopsis thaliana GN=AAP5 PE=1 SV=1 Back     alignment and function description
>sp|O22719|LHTL3_ARATH Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2 Back     alignment and function description
>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query457
224122284458 amino acid permease [Populus trichocarpa 1.0 0.997 0.853 0.0
255586132456 amino acid transporter, putative [Ricinu 0.995 0.997 0.840 0.0
359494348 623 PREDICTED: probable amino acid permease 0.997 0.731 0.778 0.0
296089993458 unnamed protein product [Vitis vinifera] 0.997 0.995 0.778 0.0
224122280440 amino acid permease [Populus trichocarpa 0.958 0.995 0.781 0.0
224061641457 amino acid permease [Populus trichocarpa 0.995 0.995 0.764 0.0
356501671461 PREDICTED: probable amino acid permease 0.997 0.989 0.730 0.0
217072554463 unknown [Medicago truncatula] gi|3885177 0.978 0.965 0.727 0.0
356527198461 PREDICTED: probable amino acid permease 0.973 0.965 0.739 0.0
356566280461 PREDICTED: probable amino acid permease 0.973 0.965 0.739 0.0
>gi|224122284|ref|XP_002330585.1| amino acid permease [Populus trichocarpa] gi|222872143|gb|EEF09274.1| amino acid permease [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  815 bits (2105), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/458 (85%), Positives = 422/458 (92%), Gaps = 1/458 (0%)

Query: 1   MAVDHSLELADGSNDDDGH-LRTGTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPAS 59
           MAV H LELA+G  DDDGH LRTGTL SCVAHIITAVIGSGVLSLAWSTAQLGWIAGP S
Sbjct: 1   MAVQHPLELANGCCDDDGHSLRTGTLWSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPVS 60

Query: 60  LLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLNLGKTQTWFCGLLQNLTFYGT 119
           LLCFAIVTYVS+FLL+DCYRSPDPI G RN SY+ AVR+NLGKTQTWFCGLLQ ++ YGT
Sbjct: 61  LLCFAIVTYVSAFLLSDCYRSPDPITGTRNYSYMHAVRVNLGKTQTWFCGLLQYVSMYGT 120

Query: 120 AVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWL 179
            +AYVITTSTSMRAIQ+SNCYHREGH A C YGD  +MLLFGAVQ+++SQIPDFHNMEWL
Sbjct: 121 GIAYVITTSTSMRAIQRSNCYHREGHKASCEYGDAIYMLLFGAVQILVSQIPDFHNMEWL 180

Query: 180 SVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYP 239
           SVIAAIMSF YSFIGFGLG A+VIENG IKGSIAGV  A  A+KLWLAF+ALGDIAFAYP
Sbjct: 181 SVIAAIMSFTYSFIGFGLGVAQVIENGTIKGSIAGVSAATTANKLWLAFEALGDIAFAYP 240

Query: 240 YSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGF 299
           YSIILLEIQDTLKSPPPENKTMK ASMISIFITTFFYLCCGCFGYAAFGN+TPGNLLTGF
Sbjct: 241 YSIILLEIQDTLKSPPPENKTMKKASMISIFITTFFYLCCGCFGYAAFGNNTPGNLLTGF 300

Query: 300 GFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLL 359
           GF+EPYWL+DLANAC+VLHLVGGYQI+SQPVFAFVE WF+RK+PSSGFVNNF++FKLPL+
Sbjct: 301 GFFEPYWLVDLANACVVLHLVGGYQIYSQPVFAFVEGWFSRKFPSSGFVNNFHSFKLPLI 360

Query: 360 PPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKI 419
            PL +N+ RLCFRT YV STTAVA+ FPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKI
Sbjct: 361 RPLHINLFRLCFRTVYVASTTAVAMAFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKI 420

Query: 420 GAWTRKWIVLRTFSFICLLVTIIGLIGSIEGLISAKLG 457
           GAWTRKWIVLRTFSF CLL+TI GL+GSIEGLISAKLG
Sbjct: 421 GAWTRKWIVLRTFSFACLLITIAGLLGSIEGLISAKLG 458

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255586132|ref|XP_002533728.1| amino acid transporter, putative [Ricinus communis] gi|223526366|gb|EEF28659.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359494348|ref|XP_002268981.2| PREDICTED: probable amino acid permease 7-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296089993|emb|CBI39812.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224122280|ref|XP_002330584.1| amino acid permease [Populus trichocarpa] gi|222872142|gb|EEF09273.1| amino acid permease [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224061641|ref|XP_002300581.1| amino acid permease [Populus trichocarpa] gi|118487470|gb|ABK95562.1| unknown [Populus trichocarpa] gi|222847839|gb|EEE85386.1| amino acid permease [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356501671|ref|XP_003519647.1| PREDICTED: probable amino acid permease 7-like [Glycine max] Back     alignment and taxonomy information
>gi|217072554|gb|ACJ84637.1| unknown [Medicago truncatula] gi|388517771|gb|AFK46947.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356527198|ref|XP_003532199.1| PREDICTED: probable amino acid permease 7-like [Glycine max] Back     alignment and taxonomy information
>gi|356566280|ref|XP_003551361.1| PREDICTED: probable amino acid permease 7-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query457
TAIR|locus:2172868467 AAP7 "amino acid permease 7" [ 0.956 0.935 0.628 1.3e-155
TAIR|locus:2031402476 AAP3 "amino acid permease 3" [ 0.958 0.920 0.546 1.3e-137
TAIR|locus:2184707493 AAP2 "amino acid permease 2" [ 0.932 0.864 0.532 6.2e-133
TAIR|locus:2163981466 AAP4 "amino acid permease 4" [ 0.932 0.914 0.541 1.3e-132
TAIR|locus:2168912481 AAP6 "amino acid permease 6" [ 0.956 0.908 0.521 3.1e-131
TAIR|locus:2201871475 AAP8 "amino acid permease 8" [ 0.956 0.92 0.538 9.3e-130
TAIR|locus:2016600485 AAP1 "amino acid permease 1" [ 0.929 0.876 0.531 2.5e-129
TAIR|locus:2205876480 AAP5 "amino acid permease 5" [ 0.932 0.887 0.517 9.9e-126
UNIPROTKB|Q85V22441 ht "Histidine amino acid trans 0.652 0.675 0.315 1.8e-46
TAIR|locus:2031215440 AT1G25530 [Arabidopsis thalian 0.671 0.697 0.304 3.2e-43
TAIR|locus:2172868 AAP7 "amino acid permease 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1517 (539.1 bits), Expect = 1.3e-155, P = 1.3e-155
 Identities = 278/442 (62%), Positives = 342/442 (77%)

Query:    21 RTGTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRS 80
             RTGTL + VAHIIT VIG+GVLSLAW+TA+LGWIAGPA+L+ FA VT +S+FLL+DCYR 
Sbjct:    26 RTGTLWTAVAHIITGVIGAGVLSLAWATAELGWIAGPAALIAFAGVTLLSAFLLSDCYRF 85

Query:    81 PDPINGK-RNRSYIDAVRLNLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNC 139
             PDP NG  R  SY  AV+L LGK     CG++  ++ +G  +AY I  +T  RAI KSNC
Sbjct:    86 PDPNNGPLRLNSYSQAVKLYLGKKNEIVCGVVVYISLFGCGIAYTIVIATCSRAIMKSNC 145

Query:   140 YHREGHNAPCAYGDTKH--MLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGL 197
             YHR GHNA C+YGD  +  M+LFG  Q+ MSQIP+FHNM WLS++AAIMSF YSFIG GL
Sbjct:   146 YHRNGHNATCSYGDNNNYFMVLFGLTQIFMSQIPNFHNMVWLSLVAAIMSFTYSFIGIGL 205

Query:   198 GFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPE 257
                K+IEN +I+GSI G+P  N  +K+W+ FQALG+IAF+YP+SIILLEIQDTL+SPP E
Sbjct:   206 ALGKIIENRKIEGSIRGIPAENRGEKVWIVFQALGNIAFSYPFSIILLEIQDTLRSPPAE 265

Query:   258 NKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVL 317
              +TMK AS +++FI TFF+ CCGCFGYAAFG+ TPGNLLTGFGFYEP+WL+D ANACIVL
Sbjct:   266 KQTMKKASTVAVFIQTFFFFCCGCFGYAAFGDSTPGNLLTGFGFYEPFWLVDFANACIVL 325

Query:   318 HLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLL--PPLRVNILRLCFRTAY 375
             HLVGGYQ++SQP+FA  ER  T+KYP + F+  FY FKLPLL    +R+N +R+C RT Y
Sbjct:   326 HLVGGYQVYSQPIFAAAERSLTKKYPENKFIARFYGFKLPLLRGETVRLNPMRMCLRTMY 385

Query:   376 VVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTFSFI 435
             V+ TT VA++FPYFN+VLGV+GAL FWPLA+YFPVEM  +QKKI +WTR W++LR FSF+
Sbjct:   386 VLITTGVAVMFPYFNEVLGVVGALAFWPLAVYFPVEMCILQKKIRSWTRPWLLLRGFSFV 445

Query:   436 CLLVTXXXXXXXXXXXXXAKLG 457
             CLLV              AK G
Sbjct:   446 CLLVCLLSLVGSIYGLVGAKFG 467
GO:0005886 "plasma membrane" evidence=ISM
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IDA
GO:0006865 "amino acid transport" evidence=ISS
GO:0016020 "membrane" evidence=ISS
TAIR|locus:2031402 AAP3 "amino acid permease 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2184707 AAP2 "amino acid permease 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163981 AAP4 "amino acid permease 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168912 AAP6 "amino acid permease 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201871 AAP8 "amino acid permease 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016600 AAP1 "amino acid permease 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205876 AAP5 "amino acid permease 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
TAIR|locus:2031215 AT1G25530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FF99AAP7_ARATHNo assigned EC number0.63750.96710.9464yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query457
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 6e-92
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 5e-07
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  284 bits (728), Expect = 6e-92
 Identities = 123/434 (28%), Positives = 192/434 (44%), Gaps = 29/434 (6%)

Query: 21  RTGTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRS 80
            T +    V ++I A+IG+GVLSL ++  QLGWI G   L+   +++  +  LL  C + 
Sbjct: 1   GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKY 60

Query: 81  PDPINGKRNRSYIDAVRLNLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCY 140
            D + GKR +SY D      G            +  +G  ++Y+I    ++ AI  S   
Sbjct: 61  VDKVKGKRRKSYGDLGYRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFFD 120

Query: 141 HREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFA 200
                           +++FG + + +S IP+   +  LS++AA+ S     +       
Sbjct: 121 TCHISLVY-------FIIIFGLIFIPLSFIPNLSALSILSLVAAVSSLYIVILVLS---- 169

Query: 201 KVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKT 260
            V E G +     G   A    KL   F A+G I FA+    +LL IQ+T+KS P + K 
Sbjct: 170 -VAELGVLTAQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKS-PSKFKA 227

Query: 261 MKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLV 320
           M    + +I I T  Y+  G  GY AFGN+  GN+L         WLID+AN  +VLHL+
Sbjct: 228 MTKVLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILLNLPK--SDWLIDIANLLLVLHLL 285

Query: 321 GGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTT 380
             Y + + P+   VE    RK       +  +  K  L        LR+  R+  VV T 
Sbjct: 286 LSYPLQAFPIRQIVENLLFRK-----GASGKHNPKSKL--------LRVVIRSGLVVITY 332

Query: 381 AVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKI-GAWTRKWIVLRTFSFICLLV 439
            +AI  P+    L ++GA +  PL    P   +   KK       K         IC+++
Sbjct: 333 LIAISVPFLGDFLSLVGATSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVI 392

Query: 440 TIIGLIGSIEGLIS 453
            ++ +   + GLI 
Sbjct: 393 GLLLMAYGVAGLII 406

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 457
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
PTZ00206467 amino acid transporter; Provisional 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
PLN03074473 auxin influx permease; Provisional 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 100.0
PRK10483414 tryptophan permease; Provisional 99.95
PRK09664415 tryptophan permease TnaB; Provisional 99.95
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.95
PRK15132403 tyrosine transporter TyrP; Provisional 99.94
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.93
PRK13629443 threonine/serine transporter TdcC; Provisional 99.9
TIGR00814397 stp serine transporter. The HAAAP family includes 99.86
PRK10655438 potE putrescine transporter; Provisional 99.7
PRK10249458 phenylalanine transporter; Provisional 99.69
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.67
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 99.65
PRK10644445 arginine:agmatin antiporter; Provisional 99.65
PRK11387471 S-methylmethionine transporter; Provisional 99.65
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.64
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.63
PRK10746461 putative transport protein YifK; Provisional 99.63
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 99.63
PRK15049499 L-asparagine permease; Provisional 99.63
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 99.61
TIGR00913478 2A0310 amino acid permease (yeast). 99.61
PRK10238456 aromatic amino acid transporter; Provisional 99.6
PRK10580457 proY putative proline-specific permease; Provision 99.59
TIGR00909429 2A0306 amino acid transporter. 99.59
PRK11021410 putative transporter; Provisional 99.59
PRK10836489 lysine transporter; Provisional 99.57
KOG1287479 consensus Amino acid transporters [Amino acid tran 99.56
TIGR00906557 2A0303 cationic amino acid transport permease. 99.55
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.53
TIGR00911501 2A0308 L-type amino acid transporter. 99.52
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.48
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.47
PRK10197446 gamma-aminobutyrate transporter; Provisional 99.47
TIGR00930 953 2a30 K-Cl cotransporter. 99.45
COG0833541 LysP Amino acid transporters [Amino acid transport 99.44
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.39
COG0531466 PotE Amino acid transporters [Amino acid transport 99.33
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 99.3
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 99.22
TIGR00907482 2A0304 amino acid permease (GABA permease). 99.22
PRK15238496 inner membrane transporter YjeM; Provisional 99.19
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 99.14
KOG3832319 consensus Predicted amino acid transporter [Genera 99.05
PF03845320 Spore_permease: Spore germination protein; InterPr 99.05
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 98.91
KOG1286554 consensus Amino acid transporters [Amino acid tran 98.89
PRK11375484 allantoin permease; Provisional 98.38
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.36
PRK12488549 acetate permease; Provisional 98.32
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.31
COG3949349 Uncharacterized membrane protein [Function unknown 98.31
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.28
TIGR00813407 sss transporter, SSS family. have different number 98.24
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.19
COG0591493 PutP Na+/proline symporter [Amino acid transport a 98.18
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 98.16
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.16
KOG1289550 consensus Amino acid transporters [Amino acid tran 98.13
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 97.97
PRK09395551 actP acetate permease; Provisional 97.96
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 97.82
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 97.75
PRK15419502 proline:sodium symporter PutP; Provisional 97.7
PRK11017404 codB cytosine permease; Provisional 97.67
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 97.57
COG1457442 CodB Purine-cytosine permease and related proteins 97.43
PRK00701439 manganese transport protein MntH; Reviewed 97.22
TIGR00835425 agcS amino acid carrier protein. Members of the AG 97.21
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 97.07
PRK10484523 putative transporter; Provisional 97.07
COG4147529 DhlC Predicted symporter [General function predict 96.91
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 96.87
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 96.71
PF01566358 Nramp: Natural resistance-associated macrophage pr 96.25
PRK15015 701 carbon starvation protein A; Provisional 96.01
COG0733439 Na+-dependent transporters of the SNF family [Gene 95.87
COG1966575 CstA Carbon starvation protein, predicted membrane 95.73
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 94.96
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 94.9
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 94.67
KOG2466572 consensus Uridine permease/thiamine transporter/al 94.42
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 93.75
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 93.54
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 93.47
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 93.16
PRK15433439 branched-chain amino acid transport system 2 carri 92.88
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 92.17
KOG1288 945 consensus Amino acid transporters [Amino acid tran 90.84
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 88.96
PRK15433439 branched-chain amino acid transport system 2 carri 88.89
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 87.23
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 84.71
KOG2349 585 consensus Na+:iodide/myo-inositol/multivitamin sym 84.06
KOG1291503 consensus Mn2+ and Fe2+ transporters of the NRAMP 83.22
COG0814415 SdaC Amino acid permeases [Amino acid transport an 82.63
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.7e-57  Score=443.63  Aligned_cols=402  Identities=38%  Similarity=0.657  Sum_probs=357.9

Q ss_pred             cccchHHHHHHHHHhhhhccccchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHHH
Q 012753           20 LRTGTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLN   99 (457)
Q Consensus        20 ~~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~   99 (457)
                      +|++|++++.+|.+|.++|.|+|++|+|+++.||..|+++++..++++.||..+|.+|.+.++.+.++|.++|+|+++++
T Consensus        35 ~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~~a  114 (437)
T KOG1303|consen   35 SRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQAA  114 (437)
T ss_pred             CCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHHHH
Confidence            77899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchhHH
Q 012753          100 LGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWL  179 (457)
Q Consensus       100 ~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~~  179 (457)
                      ||+++++++.+++.+.+++.|+.|++..+|.+..+.+..+.+.+      ....+.|+++++++.+|++++||++.++++
T Consensus       115 fG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~------~l~~~~f~iif~~i~~~~s~lp~~~~l~~~  188 (437)
T KOG1303|consen  115 FGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN------SLDKQYFIIIFGLIVLPLSQLPNFHSLSYL  188 (437)
T ss_pred             hCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc------cccceehhhhHHHHHHHHHHCCCcchhHHH
Confidence            99988999999999999999999999999999999998776532      133568899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCChhHHHHHHHHHHHHHHhhccCcceehhhhccccCCCccch
Q 012753          180 SVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENK  259 (457)
Q Consensus       180 s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~  259 (457)
                      |..+.+.++.+..+.+.++..+..+.+.+.   .+.+...+..   ..+++++++.|+|++|..+|+|+++||+|    +
T Consensus       189 S~~~avmS~~~a~~~~~~g~~~g~~~~~~~---~~~~~~~~~~---~~f~a~g~iaFaf~gH~v~peIq~tMk~p----~  258 (437)
T KOG1303|consen  189 SLVGAVMSTLYAVILIVLGIADGVGFCAPS---GGYLDLGTIP---TVFTALGIIAFAYGGHAVLPEIQHTMKSP----P  258 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccCCcc---cCcccCCCCc---chhhhhhheeeeecCCeeeeehHhhcCCc----h
Confidence            999999999888877776665544332221   1121111111   11899999999999999999999999999    7


Q ss_pred             hhhHHHHHHHHHHHHHHHhhhccccccccccccccccccccccCchhHHHHHHHHHHHHhhhcccccccchHHHHHHHHh
Q 012753          260 TMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFT  339 (457)
Q Consensus       260 ~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~  339 (457)
                      +|+|++.+++.+++++|+..++.||++|||+++|+++.|++  .|.|....+++++.+|++.+|+++..|+.+.+|+...
T Consensus       259 ~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~--~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~  336 (437)
T KOG1303|consen  259 KFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ--PPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIG  336 (437)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc--CchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhc
Confidence            79999999999999999999999999999999999999996  5899999999999999999999999999999999987


Q ss_pred             hhCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHcCChHHHHHHhhhhhcchhhhhhhhHHHHhHhcc
Q 012753          340 RKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKI  419 (457)
Q Consensus       340 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~v~~~~Ga~~~~~~~~ilP~l~~~~~~~~  419 (457)
                      .++++  +.             .+....|...|+.+++.++++|+.+|.|+++++++||+...++.+++|+++|++.+|+
T Consensus       337 ~~~~~--~~-------------~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~  401 (437)
T KOG1303|consen  337 VKHPD--FK-------------KRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKP  401 (437)
T ss_pred             cCCcc--cc-------------ccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            65332  00             0123689999999999999999999999999999999999999999999999999988


Q ss_pred             CCcchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 012753          420 GAWTRKWIVLRTF-SFICLLVTIIGLIGSIEGLISA  454 (457)
Q Consensus       420 ~~~~~~~~~~~~~-~~~g~~~~v~g~~~~i~~l~~~  454 (457)
                      +++..+|+.++.+ .++++++++....++++.++.+
T Consensus       402 ~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~  437 (437)
T KOG1303|consen  402 KRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID  437 (437)
T ss_pred             hhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence            8888999999988 7999999999999999988764

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query457
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.76
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.64
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 99.52
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 98.5
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 98.02
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 97.7
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 82.08
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.76  E-value=6.1e-17  Score=162.82  Aligned_cols=365  Identities=13%  Similarity=0.043  Sum_probs=205.7

Q ss_pred             cccchHHHHHHHHHhhhhccccchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHHH
Q 012753           20 LRTGTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLN   99 (457)
Q Consensus        20 ~~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~   99 (457)
                      +|+.+.++..+..+++++|+|++.+|...++.|.. +++..++.++........+.|...+. |+.|    ...+..++.
T Consensus         7 ~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~-p~~G----g~y~~~~~~   80 (445)
T 3l1l_A            7 AHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLD-PSPG----GSYAYARRC   80 (445)
T ss_dssp             CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHC-CCTT----THHHHHHHH
T ss_pred             CCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccC-CCCC----CchhhHHhH
Confidence            67899999999999999999999999998888874 78888888999988888888866542 3333    566778999


Q ss_pred             cCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchhHH
Q 012753          100 LGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWL  179 (457)
Q Consensus       100 ~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~~  179 (457)
                      +||+.+++..+...+.......++....++++..+++...       .+  .....+.++..++...+ ..+..|....+
T Consensus        81 ~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~~~~~~~~~~~~~i-n~~g~~~~~~~  150 (445)
T 3l1l_A           81 FGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK-------DP--WVLTITCVVVLWIFVLL-NIVGPKMITRV  150 (445)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG-------SH--HHHHHHHHHHHHHHHHH-HHHCHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc-------cc--HHHHHHHHHHHHHHHHH-HHhchHHHHHH
Confidence            9999999999999888877777787777777665443210       00  10011111111111111 12334444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCChhHHHHHHHHHHHHHHhhccCcceehhhhccccCCCccch
Q 012753          180 SVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENK  259 (457)
Q Consensus       180 s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~  259 (457)
                      +.+.....+.   ..+...+......++. ...++.. ........+++.++...+|+|.|.+......+|+|||+   |
T Consensus       151 ~~~~~~~~i~---~~~~~~i~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~---r  222 (445)
T 3l1l_A          151 QAVATVLALI---PIVGIAVFGWFWFRGE-TYMAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPK---R  222 (445)
T ss_dssp             HHHHHHHHHH---HHHHHHHTTSTTCCCC-CCCCC------------HHHHHHHHHHTTTTTTHHHHGGGGBSSHH---H
T ss_pred             HHHHHHHHHH---HHHHHHHHHHHHhChh-hcccccC-ccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCcc---c
Confidence            4333332221   1111111111111111 0001111 11111244677899999999999999999999999996   8


Q ss_pred             hhhHHHHHHHHHHHHHHHhhhccccccccccccc----cccccccccCchhHHHHHHHHHHHHhhhcccccccchHHHHH
Q 012753          260 TMKMASMISIFITTFFYLCCGCFGYAAFGNDTPG----NLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVE  335 (457)
Q Consensus       260 ~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~----~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~  335 (457)
                      +.+|++..+..++.++|+..........+.+...    ....-......++...+..+...+..+++.-......-..+.
T Consensus       223 ~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~  302 (445)
T 3l1l_A          223 NVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAK  302 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998777655555543211    111111100123455566666666666654332222222222


Q ss_pred             HHHhh-hCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHc----CChHHHHHHhhhhhcchhhhhhhh
Q 012753          336 RWFTR-KYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIF----PYFNQVLGVLGALNFWPLAIYFPV  410 (457)
Q Consensus       336 ~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~i----p~~~~v~~~~Ga~~~~~~~~ilP~  410 (457)
                      ..=.+ ..|+  ...+.+..+.|        ..-..+..++..+ ..+....    ..++.+.++.+.  ...+.|.+++
T Consensus       303 ~~a~dg~lP~--~~~~~~~~~~P--------~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~--~~~~~y~~~~  369 (445)
T 3l1l_A          303 AAADDGLFPP--IFARVNKAGTP--------VAGLIIVGILMTI-FQLSSISPNATKEFGLVSSVSVI--FTLVPYLYTC  369 (445)
T ss_dssp             HHHHTTSSCG--GGGCCCTTCCC--------HHHHHHHHHHHHH-HHHSTTSHHHHCCCHHHHHHHHH--HHHHHHHHHH
T ss_pred             HHHhCCCCcH--HHHhcCCCCCC--------HHHHHHHHHHHHH-HHHHHHcccHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence            11111 1221  11111111222        2222222221111 1111112    236666666642  3478999999


Q ss_pred             HHHHhHhccCC
Q 012753          411 EMYFVQKKIGA  421 (457)
Q Consensus       411 l~~~~~~~~~~  421 (457)
                      +.+++.+|+++
T Consensus       370 ~~~~~~r~~~~  380 (445)
T 3l1l_A          370 AALLLLGHGHF  380 (445)
T ss_dssp             HHHHHHHSSSS
T ss_pred             HHHHHHhhcCc
Confidence            99999887654
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query457
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 89.67
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.67  E-value=8.2  Score=36.06  Aligned_cols=108  Identities=12%  Similarity=0.019  Sum_probs=61.1

Q ss_pred             chHHHHHHHHHhhhhccc-cchhHHHHHh-hCcchHHHHHHHHHHHHHHHHH----HHHhcccCCCCcCCcccccHHHHH
Q 012753           23 GTLRSCVAHIITAVIGSG-VLSLAWSTAQ-LGWIAGPASLLCFAIVTYVSSF----LLADCYRSPDPINGKRNRSYIDAV   96 (457)
Q Consensus        23 ~s~~~a~~~li~~~iG~G-iL~lP~af~~-~G~~~g~i~l~~~~~~~~~s~~----~l~~~~~~~~~~~~~~~~~y~~l~   96 (457)
                      .|..+-++..++..+|.| +.-.|+-..+ .|.. -++.-+++.++...-..    .+.|-.++ .+     ...+..+.
T Consensus         5 ~s~~~fila~~g~avGlGNiWrFPyl~~~nGGga-FlipY~~~l~l~gvPll~lE~~lGq~~~~-g~-----i~~~~~i~   77 (509)
T d2a65a1           5 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGA-FMIPYIIAFLLVGIPLMWIEWAMGRYGGA-QG-----HGTTPAIF   77 (509)
T ss_dssp             SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHH-HHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TT-----CCSHHHHH
T ss_pred             CChHHHHHHHHHHHhcccHHHhhhHHHHhcCCch-hHHHHHHHHHHHHHHHHHHHHHHcCCCCC-Cc-----ccHHHHHH
Confidence            356677888899999998 6668998765 4432 23333333222222222    23332222 11     23677777


Q ss_pred             HHHcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHh
Q 012753           97 RLNLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKS  137 (457)
Q Consensus        97 ~~~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~  137 (457)
                      ....+++....+.+...+..+..++-|.+..+-.+..+.+.
T Consensus        78 ~~~~~~~~~~giG~~~~~~~~~i~~yy~vi~~w~l~Y~~~s  118 (509)
T d2a65a1          78 YLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKF  118 (509)
T ss_dssp             HHHSCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccCcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76665444444555666666666666777777666655543