BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012755
(457 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 79/193 (40%), Gaps = 22/193 (11%)
Query: 173 EAFDPLRQRWMRLPRMQCDECFTSADKESLAVGTQLLVFG-----RELSGFAIWMYSLIA 227
E +DP Q W LP + + + S+++ ++ V G LS Y+
Sbjct: 34 EKYDPKTQEWSFLPSITRKRRYVA----SVSLHDRIYVIGGYDGRSRLSSVECLDYTADE 89
Query: 228 N-CWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNL 286
+ W MN+ R L G+++LG++ V+GG D + S E Y+ + W L DM
Sbjct: 90 DGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGS-RRHTSMERYDPNIDQWSMLGDMQT 148
Query: 287 PRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMS 346
R+ G Y +GG + L E+Y+ T W + M G
Sbjct: 149 AREGAGLVVASGVIYCLGGYDG-LNILNSVEKYDPHTGHWTNVTPMATKRSGAG------ 201
Query: 347 SPPLVAVVNNQLY 359
VA++N+ +Y
Sbjct: 202 ----VALLNDHIY 210
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 63/164 (38%), Gaps = 11/164 (6%)
Query: 173 EAFDPLRQRWMRLPRMQCDECFTSADKESLAVGTQLLVFGRELSGF----AIWMYSLIAN 228
E +DP +W L MQ T+ + L V + ++ G ++ Y
Sbjct: 131 ERYDPNIDQWSMLGDMQ-----TAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTG 185
Query: 229 CWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPR 288
W+ M R G + L + V GG D L S E YN +W T+ M PR
Sbjct: 186 HWTNVTPMATKRSGAGVALLNDHIYVVGGFDGT-AHLSSVEAYNIRTDSWTTVTSMTTPR 244
Query: 289 KLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENM 332
+ G+ Y I G + L+ E Y+ +W+ + +M
Sbjct: 245 CYVGATVLRGRLYAIAGYDGNS-LLSSIECYDPIIDSWEVVTSM 287
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 59/153 (38%), Gaps = 24/153 (15%)
Query: 143 LIASGYLYKLRRQLGMVEHWVYLACILMPWEAFDPLRQRWMRLPRMQCDECFTSADKESL 202
++ASG +Y L G+ IL E +DP W + M A K S
Sbjct: 156 VVASGVIYCLGGYDGL--------NILNSVEKYDPHTGHWTNVTPM--------ATKRSG 199
Query: 203 AVGTQLLVFGRELSGF-------AIWMYSLIANCWSKCPQMNLPRCLFGSSSLGEVAIVA 255
A L + GF ++ Y++ + W+ M PRC G++ L
Sbjct: 200 AGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAI 259
Query: 256 GGTDKNGCILKSAELYNSELGTWETLPDMNLPR 288
G D N +L S E Y+ + +WE + M R
Sbjct: 260 AGYDGN-SLLSSIECYDPIIDSWEVVTSMGTQR 291
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 250 EVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFMDGKFYIIGG 305
EV +V GG + E Y+ + W LP + R+ + + + Y+IGG
Sbjct: 15 EVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGG 70
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 81/197 (41%), Gaps = 25/197 (12%)
Query: 173 EAFDPLRQRWMRLPRMQCDECFTSADKESLAVGTQLLVFGRELS------GFAIWMYSLI 226
EA++P W+RL +Q S + G V GR S A+ Y+ +
Sbjct: 35 EAYNPSNGSWLRLADLQVPR---SGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPM 91
Query: 227 ANCWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSA-ELYNSELGTWETLPDMN 285
N WS C M++PR G + GG+ +GCI S+ E Y E W + M
Sbjct: 92 TNQWSPCASMSVPRNRIGVGVIDGHIYAVGGS--HGCIHHSSVERYEPERDEWHLVAPM- 148
Query: 286 LPRKLCSGF-FMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPA 344
L R++ G ++ Y +GG T+ L E Y E W+ I M
Sbjct: 149 LTRRIGVGVAVLNRLLYAVGGFDG-TNRLNSAECYYPERNEWRMITPM----------NT 197
Query: 345 MSSPPLVAVVNNQLYSA 361
+ S V V++N +Y+A
Sbjct: 198 IRSGAGVCVLHNCIYAA 214
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 74/210 (35%), Gaps = 29/210 (13%)
Query: 132 TLSCLNRKFKSLIASGYLYKLRRQLGMVEHWVYLACILMPWEAFDPLRQRWMRLPRMQCD 191
++S + + G++Y + G + H E ++P R W + M
Sbjct: 100 SMSVPRNRIGVGVIDGHIYAVGGSHGCIHH--------SSVERYEPERDEWHLVAPM--- 148
Query: 192 ECFTSADKESLAVGTQLLVFGRELSGF-------AIWMYSLIANCWSKCPQMNLPRCLFG 244
T +AV +LL + GF + Y N W MN R G
Sbjct: 149 --LTRRIGVGVAVLNRLLY---AVGGFDGTNRLNSAECYYPERNEWRMITPMNTIRSGAG 203
Query: 245 SSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFMDGKFYIIG 304
L AGG D L S E Y+ E TW + M R GK Y++G
Sbjct: 204 VCVLHNCIYAAGGYDGQD-QLNSVERYDVETETWTFVAPMRHHRSALGITVHQGKIYVLG 262
Query: 305 GMSSPT--DPLTCGEEYNLETRTWKRIENM 332
G T D + C Y+ ++ TW + M
Sbjct: 263 GYDGHTFLDSVEC---YDPDSDTWSEVTRM 289
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 248 LGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFMDGKFYIIGGMS 307
+G + AGG + L E YN G+W L D+ +PR +G + G Y +GG +
Sbjct: 16 VGRLIYTAGGYFRQS--LSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRN 73
Query: 308 SPTDPLTCGEE---YNLETRTWKRIENM 332
+ D T YN T W +M
Sbjct: 74 NSPDGNTDSSALDCYNPMTNQWSPCASM 101
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 81/197 (41%), Gaps = 25/197 (12%)
Query: 173 EAFDPLRQRWMRLPRMQCDECFTSADKESLAVGTQLLVFGRELS------GFAIWMYSLI 226
EA++P W+RL +Q S + G V GR S A+ Y+ +
Sbjct: 36 EAYNPSNGSWLRLADLQVPR---SGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPM 92
Query: 227 ANCWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSA-ELYNSELGTWETLPDMN 285
N WS C M++PR G + GG+ +GCI S+ E Y E W + M
Sbjct: 93 TNQWSPCASMSVPRNRIGVGVIDGHIYAVGGS--HGCIHHSSVERYEPERDEWHLVAPM- 149
Query: 286 LPRKLCSGF-FMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPA 344
L R++ G ++ Y +GG T+ L E Y E W+ I M
Sbjct: 150 LTRRIGVGVAVLNRLLYAVGGFDG-TNRLNSAECYYPERNEWRMITPM----------NT 198
Query: 345 MSSPPLVAVVNNQLYSA 361
+ S V V++N +Y+A
Sbjct: 199 IRSGAGVCVLHNCIYAA 215
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 74/210 (35%), Gaps = 29/210 (13%)
Query: 132 TLSCLNRKFKSLIASGYLYKLRRQLGMVEHWVYLACILMPWEAFDPLRQRWMRLPRMQCD 191
++S + + G++Y + G + H E ++P R W + M
Sbjct: 101 SMSVPRNRIGVGVIDGHIYAVGGSHGCIHH--------SSVERYEPERDEWHLVAPM--- 149
Query: 192 ECFTSADKESLAVGTQLLVFGRELSGF-------AIWMYSLIANCWSKCPQMNLPRCLFG 244
T +AV +LL + GF + Y N W MN R G
Sbjct: 150 --LTRRIGVGVAVLNRLLY---AVGGFDGTNRLNSAECYYPERNEWRMITPMNTIRSGAG 204
Query: 245 SSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFMDGKFYIIG 304
L AGG D L S E Y+ E TW + M R GK Y++G
Sbjct: 205 VCVLHNCIYAAGGYDGQD-QLNSVERYDVETETWTFVAPMRHHRSALGITVHQGKIYVLG 263
Query: 305 GMSSPT--DPLTCGEEYNLETRTWKRIENM 332
G T D + C Y+ ++ TW + M
Sbjct: 264 GYDGHTFLDSVEC---YDPDSDTWSEVTRM 290
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 248 LGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFMDGKFYIIGGMS 307
+G + AGG + L E YN G+W L D+ +PR +G + G Y +GG +
Sbjct: 17 VGRLIYTAGGYFRQS--LSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRN 74
Query: 308 SPTDPLTCGEE---YNLETRTWKRIENM 332
+ D T YN T W +M
Sbjct: 75 NSPDGNTDSSALDCYNPMTNQWSPCASM 102
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 16/161 (9%)
Query: 175 FDPLRQRWMRLPRMQCDECFTSA----DKESLAVGTQLLVFGRELSGFAIWMYSLIANCW 230
D + W+ LP + C DK + G L E S ++ Y +A W
Sbjct: 83 LDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQT---EASLDSVLCYDPVAAKW 139
Query: 231 SKCPQMNLPRCLFGSSSL---GEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLP 287
S+ NLP ++G + + G + + G TD C +YN + G W+ L M P
Sbjct: 140 SEVK--NLPIKVYGHNVISHNGMIYCLGGKTDDKKCT-NRVFIYNPKKGDWKDLAPMKTP 196
Query: 288 RKLCSGFFMDGKFYIIGGMSSPTDPLTCG-EEYNLETRTWK 327
R + GK I GG++ D L+ E ++L+T W+
Sbjct: 197 RSMFGVAIHKGKIVIAGGVTE--DGLSASVEAFDLKTNKWE 235
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 220 IWMYSLIANCWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWE 279
+++Y+ W M PR +FG + ++AGG ++G + S E ++ + WE
Sbjct: 177 VFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDG-LSASVEAFDLKTNKWE 235
Query: 280 TLPDMNLPRKLCSGFFMDGKFYIIGGMS 307
+ + R S + G Y IGG +
Sbjct: 236 VMTEFPQERSSISLVSLAGSLYAIGGFA 263
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 81/198 (40%), Gaps = 27/198 (13%)
Query: 173 EAFDPLRQRWMRLPRMQCDECFTSADKESLAVGTQLLVFGRELS------GFAIWMYSLI 226
EA++P W+RL +Q S + G V GR S A+ Y+ +
Sbjct: 42 EAYNPSDGTWLRLADLQVPR---SGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPM 98
Query: 227 ANCWSKCPQMNLPRCLFGSSSL-GEVAIVAGGTDKNGCI-LKSAELYNSELGTWETLPDM 284
N WS C M++PR G + G + V G +GCI S E Y E W + M
Sbjct: 99 TNQWSPCAPMSVPRNRIGVGVIDGHIYAVGG---SHGCIHHNSVERYEPERDEWHLVAPM 155
Query: 285 NLPRKLCSGF-FMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNP 343
L R++ G ++ Y +GG T+ L E Y E W+ I M
Sbjct: 156 -LTRRIGVGVAVLNRLLYAVGGFDG-TNRLNSAECYYPERNEWRMITAM----------N 203
Query: 344 AMSSPPLVAVVNNQLYSA 361
+ S V V++N +Y+A
Sbjct: 204 TIRSGAGVCVLHNCIYAA 221
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 73/209 (34%), Gaps = 29/209 (13%)
Query: 133 LSCLNRKFKSLIASGYLYKLRRQLGMVEHWVYLACILMPWEAFDPLRQRWMRLPRMQCDE 192
+S + + G++Y + G + H E ++P R W + M
Sbjct: 108 MSVPRNRIGVGVIDGHIYAVGGSHGCIHH--------NSVERYEPERDEWHLVAPM---- 155
Query: 193 CFTSADKESLAVGTQLLVFGRELSGF-------AIWMYSLIANCWSKCPQMNLPRCLFGS 245
T +AV +LL + GF + Y N W MN R G
Sbjct: 156 -LTRRIGVGVAVLNRLLY---AVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGV 211
Query: 246 SSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFMDGKFYIIGG 305
L AGG D L S E Y+ E TW + M R G+ Y++GG
Sbjct: 212 CVLHNCIYAAGGYDGQD-QLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGG 270
Query: 306 MSSPT--DPLTCGEEYNLETRTWKRIENM 332
T D + C Y+ +T TW + M
Sbjct: 271 YDGHTFLDSVEC---YDPDTDTWSEVTRM 296
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 248 LGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFMDGKFYIIGGMS 307
+G + AGG + L E YN GTW L D+ +PR +G + G Y +GG +
Sbjct: 23 VGRLIYTAGGYFRQS--LSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRN 80
Query: 308 SPTDPLTCGEE---YNLETRTWK 327
+ D T YN T W
Sbjct: 81 NSPDGNTDSSALDCYNPMTNQWS 103
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 81/198 (40%), Gaps = 27/198 (13%)
Query: 173 EAFDPLRQRWMRLPRMQCDECFTSADKESLAVGTQLLVFGRELS------GFAIWMYSLI 226
EA++P W+RL +Q S + G V GR S A+ Y+ +
Sbjct: 43 EAYNPSDGTWLRLADLQVPR---SGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPM 99
Query: 227 ANCWSKCPQMNLPRCLFGSSSL-GEVAIVAGGTDKNGCI-LKSAELYNSELGTWETLPDM 284
N WS C M++PR G + G + V G +GCI S E Y E W + M
Sbjct: 100 TNQWSPCAPMSVPRNRIGVGVIDGHIYAVGG---SHGCIHHNSVERYEPERDEWHLVAPM 156
Query: 285 NLPRKLCSGF-FMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNP 343
L R++ G ++ Y +GG T+ L E Y E W+ I M
Sbjct: 157 -LTRRIGVGVAVLNRLLYAVGGFDG-TNRLNSAECYYPERNEWRMITAM----------N 204
Query: 344 AMSSPPLVAVVNNQLYSA 361
+ S V V++N +Y+A
Sbjct: 205 TIRSGAGVCVLHNCIYAA 222
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 73/209 (34%), Gaps = 29/209 (13%)
Query: 133 LSCLNRKFKSLIASGYLYKLRRQLGMVEHWVYLACILMPWEAFDPLRQRWMRLPRMQCDE 192
+S + + G++Y + G + H E ++P R W + M
Sbjct: 109 MSVPRNRIGVGVIDGHIYAVGGSHGCIHH--------NSVERYEPERDEWHLVAPM---- 156
Query: 193 CFTSADKESLAVGTQLLVFGRELSGF-------AIWMYSLIANCWSKCPQMNLPRCLFGS 245
T +AV +LL + GF + Y N W MN R G
Sbjct: 157 -LTRRIGVGVAVLNRLLY---AVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGV 212
Query: 246 SSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFMDGKFYIIGG 305
L AGG D L S E Y+ E TW + M R G+ Y++GG
Sbjct: 213 CVLHNCIYAAGGYDGQD-QLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGG 271
Query: 306 MSSPT--DPLTCGEEYNLETRTWKRIENM 332
T D + C Y+ +T TW + M
Sbjct: 272 YDGHTFLDSVEC---YDPDTDTWSEVTRM 297
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 238 LPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFMD 297
+PR + +G + AGG + L E YN GTW L D+ +PR +G +
Sbjct: 14 VPRGSHMAPKVGRLIYTAGGYFRQS--LSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVG 71
Query: 298 GKFYIIGGMSSPTDPLTCGEE---YNLETRTWK 327
G Y +GG ++ D T YN T W
Sbjct: 72 GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 104
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
Length = 302
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 2/109 (1%)
Query: 223 YSLIANCWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLP 282
Y+ N W+ +M+ R G L + GG D + KS E+Y+ W +
Sbjct: 178 YNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHD-GPLVRKSVEVYDPTTNAWRQVA 236
Query: 283 DMNLPRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIEN 331
DMN+ R+ ++G Y++GG + L E YN T W + +
Sbjct: 237 DMNMCRRNAGVCAVNGLLYVVGGDDGSCN-LASVEYYNPTTDKWTVVSS 284
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 85/234 (36%), Gaps = 30/234 (12%)
Query: 230 WSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCI-LKSAELYNSELGTWETLPDMNLPR 288
W + ++ RC G + + GG NG + +++ + Y+ W ++ +M R
Sbjct: 42 WHQVAELPSRRCRAGMVYMAGLVFAVGGF--NGSLRVRTVDSYDPVKDQWTSVANMRDRR 99
Query: 289 KLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSP 348
++G Y +GG T L+ E YN+++ W + P N S
Sbjct: 100 STLGAAVLNGLLYAVGGFDGSTG-LSSVEAYNIKSNEWFHVA---PMNTRRSSVGVGVVG 155
Query: 349 PLVAVVNNQLYSADQAXXXXXXXXXXXXSWTVVKRLPVRANSFNGWGLAFKACGNSLLVI 408
L+ V ++ Q WT + + R + G N L +
Sbjct: 156 GLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRS-----GAGVGVLNNLLYAV 210
Query: 409 GGHRELQGEII--VLHSWDPTDGNSGEAQWNELA----VRERAGAFVYNCAVMG 456
GGH G ++ + +DPT W ++A R AG CAV G
Sbjct: 211 GGH---DGPLVRKSVEVYDPTTN-----AWRQVADMNMCRRNAGV----CAVNG 252
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 68/168 (40%), Gaps = 17/168 (10%)
Query: 173 EAFDPLRQRWMRLPRMQCDECFTSADKESLAVGTQLLVFGRELSGF-------AIWMYSL 225
+++DP++ +W + M+ D+ S L + GF ++ Y++
Sbjct: 80 DSYDPVKDQWTSVANMR--------DRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNI 131
Query: 226 IANCWSKCPQMNLPRCLFGSSSLGEVAIVAGGTD-KNGCILKSAELYNSELGTWETLPDM 284
+N W MN R G +G + GG D + L + E YN+ W + +M
Sbjct: 132 KSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEM 191
Query: 285 NLPRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENM 332
+ R ++ Y +GG P + E Y+ T W+++ +M
Sbjct: 192 STRRSGAGVGVLNNLLYAVGGHDGPLVRKSV-EVYDPTTNAWRQVADM 238
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 219 AIWMYSLIANCWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTW 278
++ +Y N W + MN+ R G ++ + V GG D C L S E YN W
Sbjct: 221 SVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGG-DDGSCNLASVEYYNPTTDKW 279
Query: 279 ETL 281
+
Sbjct: 280 TVV 282
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 79/198 (39%), Gaps = 27/198 (13%)
Query: 173 EAFDPLRQRWMRLPRMQCDECFTSADKESLAVGTQLLVFGRELS------GFAIWMYSLI 226
EA++P W+RL +Q S + G V GR S A+ Y+
Sbjct: 42 EAYNPSNGTWLRLADLQVPR---SGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPX 98
Query: 227 ANCWSKCPQMNLPRCLFGSSSL-GEVAIVAGGTDKNGCI-LKSAELYNSELGTWETLPDM 284
N WS C ++PR G + G + V G +GCI S E Y E W L
Sbjct: 99 TNQWSPCAPXSVPRNRIGVGVIDGHIYAVGG---SHGCIHHNSVERYEPERDEWH-LVAP 154
Query: 285 NLPRKLCSGF-FMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNP 343
L R++ G ++ Y +GG T+ L E Y E W+ I T N
Sbjct: 155 XLTRRIGVGVAVLNRLLYAVGGFDG-TNRLNSAECYYPERNEWRXI---------TAXN- 203
Query: 344 AMSSPPLVAVVNNQLYSA 361
+ S V V++N +Y+A
Sbjct: 204 TIRSGAGVCVLHNCIYAA 221
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 248 LGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFMDGKFYIIGGMS 307
+G + AGG + L E YN GTW L D+ +PR +G + G Y +GG +
Sbjct: 23 VGRLIYTAGGYFRQS--LSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRN 80
Query: 308 SPTDPLTCGEE---YNLETRTWK 327
+ D T YN T W
Sbjct: 81 NSPDGNTDSSALDCYNPXTNQWS 103
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 52/127 (40%), Gaps = 7/127 (5%)
Query: 212 GRELSGFAIWM---YSLIANCWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKN---GCIL 265
G E+ A+++ Y W P M RC G + V GG+ N G +L
Sbjct: 109 GSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVL 168
Query: 266 KSAELYNSELGTWETLPDMNLPRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRT 325
S E+Y+ TW L M RK F+ K + +GG + L E Y+++
Sbjct: 169 NSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNG-LGGLDNVEYYDIKLNE 227
Query: 326 WKRIENM 332
WK + M
Sbjct: 228 WKMVSPM 234
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 3/110 (2%)
Query: 223 YSLIANCWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLP 282
Y+++ + W PR + + +GG++ L E Y++ +W T P
Sbjct: 75 YNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP 134
Query: 283 DMNLPRKLCSGFFMDGKFYIIGGM---SSPTDPLTCGEEYNLETRTWKRI 329
M R +G Y+ GG + L E Y+ T TW +
Sbjct: 135 SMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTEL 184
>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant
Length = 639
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 253 IVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFM-DGKFYIIGGMSSPTD 311
+V GG D K LY+S +W PDM + R S M DG+ + IGG S
Sbjct: 240 VVTGGNDA-----KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSGSGGV 294
Query: 312 PLTCGEEYNLETRTWKRIEN 331
GE Y+ ++TW + N
Sbjct: 295 FEKNGEVYSPSSKTWTSLPN 314
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 222 MYSLIANCWSKCPQMNLPRCLFGSSSLGEVAIVA-GGTDKNGCILKSAELYNSELGTWET 280
+Y ++ W P M + R S+++ + + GG+ G K+ E+Y+ TW +
Sbjct: 252 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSGSGGVFEKNGEVYSPSSKTWTS 311
Query: 281 LPDMNL 286
LP+ +
Sbjct: 312 LPNAKV 317
>pdb|2EIB|A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant
Length = 639
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 253 IVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFM-DGKFYIIGGMSSPTD 311
+V GG D K LY+S +W PDM + R S M DG+ + IGG S
Sbjct: 240 VVTGGNDA-----KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSHSGGV 294
Query: 312 PLTCGEEYNLETRTWKRIEN 331
GE Y+ ++TW + N
Sbjct: 295 FEKNGEVYSPSSKTWTSLPN 314
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 222 MYSLIANCWSKCPQMNLPRCLFGSSSLGEVAIVA-GGTDKNGCILKSAELYNSELGTWET 280
+Y ++ W P M + R S+++ + + GG+ G K+ E+Y+ TW +
Sbjct: 252 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSHSGGVFEKNGEVYSPSSKTWTS 311
Query: 281 LPDMNL 286
LP+ +
Sbjct: 312 LPNAKV 317
>pdb|2EIC|A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f
Length = 639
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 253 IVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFM-DGKFYIIGGMSSPTD 311
+V GG D K LY+S +W PDM + R S M DG+ + IGG S
Sbjct: 240 VVTGGNDA-----KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSFSGGV 294
Query: 312 PLTCGEEYNLETRTWKRIEN 331
GE Y+ ++TW + N
Sbjct: 295 FEKNGEVYSPSSKTWTSLPN 314
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 222 MYSLIANCWSKCPQMNLPRCLFGSSSLGEVAIVA-GGTDKNGCILKSAELYNSELGTWET 280
+Y ++ W P M + R S+++ + + GG+ G K+ E+Y+ TW +
Sbjct: 252 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSFSGGVFEKNGEVYSPSSKTWTS 311
Query: 281 LPDMNL 286
LP+ +
Sbjct: 312 LPNAKV 317
>pdb|2WQ8|A Chain A, Glycan Labelling Using Engineered Variants Of Galactose
Oxidase Obtained By Directed Evolution
Length = 661
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 253 IVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFM-DGKFYIIGGMSSPTD 311
+V GG D K LY+S +W PDM + R S M DG+ + IGG S
Sbjct: 262 VVTGGNDA-----KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSFSGGV 316
Query: 312 PLTCGEEYNLETRTWKRIEN 331
GE Y+ ++TW + N
Sbjct: 317 FEKNGEVYSPSSKTWTSLPN 336
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 222 MYSLIANCWSKCPQMNLPRCLFGSSSLGEVAIVA-GGTDKNGCILKSAELYNSELGTWET 280
+Y ++ W P M + R S+++ + + GG+ G K+ E+Y+ TW +
Sbjct: 274 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSFSGGVFEKNGEVYSPSSKTWTS 333
Query: 281 LPDMNL 286
LP+ +
Sbjct: 334 LPNAKV 339
>pdb|1T2X|A Chain A, Glactose Oxidase C383s Mutant Identified By Directed
Evolution
Length = 639
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 253 IVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFM-DGKFYIIGGMSSPTD 311
+V GG D K LY+S +W PDM + R S M DG+ + IGG S
Sbjct: 240 VVTGGNDA-----KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGV 294
Query: 312 PLTCGEEYNLETRTWKRIEN 331
GE Y+ ++TW + N
Sbjct: 295 FEKNGEVYSPSSKTWTSLPN 314
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 222 MYSLIANCWSKCPQMNLPRCLFGSSSLGEVAIVA-GGTDKNGCILKSAELYNSELGTWET 280
+Y ++ W P M + R S+++ + + GG+ G K+ E+Y+ TW +
Sbjct: 252 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS 311
Query: 281 LPDMNL 286
LP+ +
Sbjct: 312 LPNAKV 317
>pdb|2EIE|A Chain A, Crystal Structure Of Galactose Oxidase Complexed With
Azide
pdb|1GOF|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOG|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOH|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|2JKX|A Chain A, Galactose Oxidase. Matgo. Copper Free, Expressed In Pichia
Pastoris.
pdb|2VZ1|A Chain A, Premat-Galactose Oxidase
pdb|2VZ3|A Chain A, Bleached Galactose Oxidase
Length = 639
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 253 IVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFM-DGKFYIIGGMSSPTD 311
+V GG D K LY+S +W PDM + R S M DG+ + IGG S
Sbjct: 240 VVTGGNDA-----KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGV 294
Query: 312 PLTCGEEYNLETRTWKRIEN 331
GE Y+ ++TW + N
Sbjct: 295 FEKNGEVYSPSSKTWTSLPN 314
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 222 MYSLIANCWSKCPQMNLPRCLFGSSSLGEVAIVA-GGTDKNGCILKSAELYNSELGTWET 280
+Y ++ W P M + R S+++ + + GG+ G K+ E+Y+ TW +
Sbjct: 252 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS 311
Query: 281 LPDMNL 286
LP+ +
Sbjct: 312 LPNAKV 317
>pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase
Length = 656
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 253 IVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFM-DGKFYIIGGMSSPTD 311
+V GG D K LY+S +W PDM + R S M DG+ + IGG S
Sbjct: 257 VVTGGNDA-----KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGV 311
Query: 312 PLTCGEEYNLETRTWKRIEN 331
GE Y+ ++TW + N
Sbjct: 312 FEKNGEVYSPSSKTWTSLPN 331
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 222 MYSLIANCWSKCPQMNLPRCLFGSSSLGEVAIVA-GGTDKNGCILKSAELYNSELGTWET 280
+Y ++ W P M + R S+++ + + GG+ G K+ E+Y+ TW +
Sbjct: 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS 328
Query: 281 LPDMNL 286
LP+ +
Sbjct: 329 LPNAKV 334
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 65/163 (39%), Gaps = 13/163 (7%)
Query: 175 FDPLRQRWMRLPRMQCDECFTSADKESLAVGTQLLVFGRELSGF-----AIWMYSLIANC 229
FD L W+ +P + C + A+ + +V GRE+ ++ Y ++
Sbjct: 72 FDHLDSEWLGMPPLPSPRCLFGLGE---ALNSIYVVGGREIKDGERCLDSVMCYDRLSFK 128
Query: 230 WSKCPQMNLPRCLFGSSSLG--EVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLP 287
W + LP ++G + L ++ V GG + L +Y+ + W+ L M
Sbjct: 129 WGESDP--LPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTA 186
Query: 288 RKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIE 330
R L DG+ + G++ T + E Y++ W E
Sbjct: 187 RSLFGATVHDGRIIVAAGVTD-TGLTSSAEVYSITDNKWAPFE 228
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 43/109 (39%), Gaps = 11/109 (10%)
Query: 230 WSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRK 289
W + M R LFG++ IVA G G + SAE+Y+ W R
Sbjct: 177 WKELAPMQTARSLFGATVHDGRIIVAAGVTDTG-LTSSAEVYSITDNKWAPFEAFPQERS 235
Query: 290 LCSGFFMDGKFYIIGGMSS---------PTDPLTCGEEYNLETRTWKRI 329
S + G Y IGG ++ PT+ L YN E + W+ +
Sbjct: 236 SLSLVSLVGTLYAIGGFATLETESGELVPTE-LNDIWRYNEEEKKWEGV 283
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 46/109 (42%), Gaps = 10/109 (9%)
Query: 230 WSKCPQMNLPRCLFG-SSSLGEVAIVAGGTDKNG--CILKSAELYNSELGTW---ETLPD 283
W P + PRCLFG +L + +V G K+G C L S Y+ W + LP
Sbjct: 79 WLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERC-LDSVMCYDRLSFKWGESDPLPY 137
Query: 284 MNLPRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENM 332
+ + S MD Y+IGG S L Y+ + WK + M
Sbjct: 138 VVYGHTVLS--HMD-LVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPM 183
>pdb|2UVK|A Chain A, Structure Of Yjht
pdb|2UVK|B Chain B, Structure Of Yjht
Length = 357
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 287 PRKLCSGFFMDGKFYIIGGMSSPTDPLTC----GEEYNLETRTWKRIENMYP 334
PR + F+DG Y+ GG+ ++ LT +YN +T +W ++ + P
Sbjct: 55 PRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLXSHAP 106
>pdb|2BSP|A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant
Length = 420
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/67 (20%), Positives = 34/67 (50%), Gaps = 14/67 (20%)
Query: 400 ACGNSLLVIGGHRELQGEIIVLHS------------WDPTDGNSG--EAQWNELAVRERA 445
G + V+GG+ +++ + +++ + WDPTDG+SG +Q++ + +
Sbjct: 154 GSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGT 213
Query: 446 GAFVYNC 452
++ +C
Sbjct: 214 HIWIDHC 220
>pdb|1BN8|A Chain A, Bacillus Subtilis Pectate Lyase
Length = 420
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/67 (20%), Positives = 34/67 (50%), Gaps = 14/67 (20%)
Query: 400 ACGNSLLVIGGHRELQGEIIVLHS------------WDPTDGNSG--EAQWNELAVRERA 445
G + V+GG+ +++ + +++ + WDPTDG+SG +Q++ + +
Sbjct: 154 GSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGT 213
Query: 446 GAFVYNC 452
++ +C
Sbjct: 214 HIWIDHC 220
>pdb|2NZM|A Chain A, Hexasaccharide I Bound To Bacillus Subtilis Pectate Lyase
pdb|2O04|A Chain A, Pectate Lyase Bound To Hexasaccharide Compound Ii
pdb|2O0V|A Chain A, Pectate Lyase Bound To Hexasaccharide Compound Iii
pdb|2O0W|A Chain A, Pectate Lyase Bound To Hexasaccharide Compound Iv
pdb|2O17|A Chain A, Pectate Lyase Bound To Hexasaccharide
pdb|2O1D|A Chain A, Pectate Lyase Bound To Trisaccharide
Length = 399
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/67 (20%), Positives = 34/67 (50%), Gaps = 14/67 (20%)
Query: 400 ACGNSLLVIGGHRELQGEIIVLHS------------WDPTDGNSG--EAQWNELAVRERA 445
G + V+GG+ +++ + +++ + WDPTDG+SG +Q++ + +
Sbjct: 133 GSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGT 192
Query: 446 GAFVYNC 452
++ +C
Sbjct: 193 HIWIDHC 199
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,015,403
Number of Sequences: 62578
Number of extensions: 571618
Number of successful extensions: 1208
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1137
Number of HSP's gapped (non-prelim): 62
length of query: 457
length of database: 14,973,337
effective HSP length: 102
effective length of query: 355
effective length of database: 8,590,381
effective search space: 3049585255
effective search space used: 3049585255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)