Query 012755
Match_columns 457
No_of_seqs 339 out of 2932
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 05:58:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012755.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012755hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 1.3E-46 2.8E-51 389.3 25.1 396 20-455 130-568 (571)
2 PHA02713 hypothetical protein; 100.0 5.7E-42 1.2E-46 356.2 27.8 245 170-443 272-544 (557)
3 PLN02153 epithiospecifier prot 100.0 2.7E-36 5.8E-41 297.7 31.7 280 140-428 9-340 (341)
4 PHA03098 kelch-like protein; P 100.0 8.8E-37 1.9E-41 319.1 29.0 250 171-447 265-526 (534)
5 KOG4441 Proteins containing BT 100.0 7.4E-37 1.6E-41 316.7 26.1 230 203-454 282-521 (571)
6 PLN02153 epithiospecifier prot 100.0 5.3E-35 1.2E-39 288.4 32.0 242 177-440 4-292 (341)
7 PLN02193 nitrile-specifier pro 100.0 1.4E-34 3.1E-39 295.9 33.4 280 138-428 151-469 (470)
8 PHA02713 hypothetical protein; 100.0 5.1E-35 1.1E-39 304.2 28.8 218 218-456 272-513 (557)
9 TIGR03547 muta_rot_YjhT mutatr 100.0 1.7E-34 3.7E-39 285.6 29.8 254 159-424 16-343 (346)
10 PHA02790 Kelch-like protein; P 100.0 6E-34 1.3E-38 292.1 29.7 207 202-439 268-477 (480)
11 TIGR03548 mutarot_permut cycli 100.0 1.2E-33 2.7E-38 276.7 29.0 241 159-415 12-316 (323)
12 PLN02193 nitrile-specifier pro 100.0 4.1E-33 8.8E-38 285.2 33.3 246 173-441 140-419 (470)
13 PRK14131 N-acetylneuraminic ac 100.0 2.9E-33 6.3E-38 279.2 29.8 259 160-429 38-370 (376)
14 TIGR03547 muta_rot_YjhT mutatr 100.0 4.2E-33 9.1E-38 275.7 30.1 244 185-447 1-313 (346)
15 PHA02790 Kelch-like protein; P 100.0 7.9E-33 1.7E-37 283.8 26.5 198 159-382 270-478 (480)
16 TIGR03548 mutarot_permut cycli 100.0 6.6E-32 1.4E-36 264.5 29.7 228 200-443 8-290 (323)
17 PHA03098 kelch-like protein; P 100.0 5.9E-32 1.3E-36 282.7 27.8 216 159-388 293-525 (534)
18 PRK14131 N-acetylneuraminic ac 100.0 3.4E-31 7.3E-36 264.4 28.7 250 181-449 18-337 (376)
19 KOG4693 Uncharacterized conser 100.0 5.3E-30 1.2E-34 228.0 20.4 239 201-456 19-302 (392)
20 KOG4693 Uncharacterized conser 100.0 5E-29 1.1E-33 221.8 20.7 242 160-413 23-313 (392)
21 KOG0379 Kelch repeat-containin 99.9 2.1E-24 4.6E-29 220.5 25.7 237 187-441 56-310 (482)
22 KOG1230 Protein containing rep 99.9 2E-24 4.3E-29 203.2 19.1 256 110-381 33-347 (521)
23 KOG0379 Kelch repeat-containin 99.9 3.6E-23 7.8E-28 211.5 26.1 228 147-385 55-312 (482)
24 KOG1230 Protein containing rep 99.9 2.5E-23 5.4E-28 195.8 19.8 219 205-431 78-344 (521)
25 KOG4152 Host cell transcriptio 99.9 2.3E-22 5E-27 193.4 18.7 263 139-414 18-344 (830)
26 KOG4152 Host cell transcriptio 99.8 3.9E-19 8.4E-24 171.4 18.4 239 180-439 17-309 (830)
27 COG3055 Uncharacterized protei 99.8 9.4E-17 2E-21 149.9 22.8 251 160-423 46-370 (381)
28 COG3055 Uncharacterized protei 99.6 1.1E-13 2.5E-18 129.4 19.7 238 184-443 29-337 (381)
29 PF13964 Kelch_6: Kelch motif 99.2 1.6E-11 3.6E-16 84.9 6.3 50 239-288 1-50 (50)
30 TIGR01640 F_box_assoc_1 F-box 99.1 7.7E-08 1.7E-12 89.5 23.4 209 204-429 4-230 (230)
31 KOG2437 Muskelin [Signal trans 99.0 1.5E-10 3.2E-15 112.5 4.6 197 225-427 236-471 (723)
32 PF13964 Kelch_6: Kelch motif 99.0 7.7E-10 1.7E-14 76.5 6.6 48 287-334 1-48 (50)
33 PF01344 Kelch_1: Kelch motif; 99.0 3.8E-10 8.2E-15 77.0 4.9 47 239-285 1-47 (47)
34 KOG2437 Muskelin [Signal trans 98.9 5.4E-10 1.2E-14 108.7 4.3 191 177-367 236-459 (723)
35 PF01344 Kelch_1: Kelch motif; 98.9 1.9E-09 4.2E-14 73.4 4.8 47 287-333 1-47 (47)
36 PF07646 Kelch_2: Kelch motif; 98.8 8E-09 1.7E-13 71.0 6.1 47 239-285 1-49 (49)
37 PF13415 Kelch_3: Galactose ox 98.8 9E-09 2E-13 70.7 6.2 48 249-296 1-49 (49)
38 PF13418 Kelch_4: Galactose ox 98.8 5E-09 1.1E-13 72.0 4.6 48 239-286 1-49 (49)
39 PF07646 Kelch_2: Kelch motif; 98.8 2.4E-08 5.3E-13 68.5 6.3 47 287-333 1-49 (49)
40 TIGR01640 F_box_assoc_1 F-box 98.7 1.2E-05 2.6E-10 74.7 24.3 198 170-376 14-230 (230)
41 PF07250 Glyoxal_oxid_N: Glyox 98.7 2.4E-06 5.1E-11 78.9 18.9 152 220-387 48-211 (243)
42 smart00612 Kelch Kelch domain. 98.7 4.5E-08 9.7E-13 66.4 5.3 47 251-298 1-47 (47)
43 PF13418 Kelch_4: Galactose ox 98.7 3.1E-08 6.7E-13 68.0 4.2 47 287-333 1-48 (49)
44 PF13415 Kelch_3: Galactose ox 98.5 1.8E-07 4E-12 64.1 5.5 48 297-354 1-49 (49)
45 PLN02772 guanylate kinase 98.5 1.3E-06 2.8E-11 85.6 11.0 84 237-323 22-109 (398)
46 smart00612 Kelch Kelch domain. 98.4 6.1E-07 1.3E-11 60.7 5.2 47 299-356 1-47 (47)
47 PF13854 Kelch_5: Kelch motif 98.3 1.9E-06 4.2E-11 56.8 5.4 41 236-276 1-42 (42)
48 PRK11138 outer membrane biogen 98.3 0.0015 3.2E-08 65.9 28.8 236 159-437 68-319 (394)
49 PLN03215 ascorbic acid mannose 98.3 0.00031 6.6E-09 68.8 22.5 38 109-146 3-41 (373)
50 PLN02772 guanylate kinase 98.2 1E-05 2.2E-10 79.4 11.4 83 286-375 23-109 (398)
51 PF07250 Glyoxal_oxid_N: Glyox 98.2 2.1E-05 4.5E-10 72.7 12.1 145 173-334 49-210 (243)
52 PRK11138 outer membrane biogen 98.2 0.0026 5.7E-08 64.1 27.8 223 159-438 119-361 (394)
53 PF12937 F-box-like: F-box-lik 98.2 5.1E-07 1.1E-11 61.3 0.5 42 110-151 1-42 (47)
54 PF13854 Kelch_5: Kelch motif 98.1 8.8E-06 1.9E-10 53.7 5.3 40 284-323 1-41 (42)
55 PF13360 PQQ_2: PQQ-like domai 98.0 0.0082 1.8E-07 55.6 26.5 195 202-438 33-238 (238)
56 TIGR03300 assembly_YfgL outer 98.0 0.015 3.2E-07 58.2 29.3 230 159-438 64-305 (377)
57 TIGR03300 assembly_YfgL outer 97.9 0.023 5.1E-07 56.8 28.7 222 159-437 104-345 (377)
58 KOG0281 Beta-TrCP (transducin 97.7 0.0005 1.1E-08 64.9 12.3 45 107-151 72-120 (499)
59 smart00256 FBOX A Receptor for 97.7 6.1E-06 1.3E-10 54.0 -0.7 39 113-151 1-39 (41)
60 PF00646 F-box: F-box domain; 97.7 2.9E-06 6.2E-11 57.8 -2.8 42 110-151 3-44 (48)
61 PF13360 PQQ_2: PQQ-like domai 97.6 0.033 7E-07 51.5 23.6 182 159-379 35-237 (238)
62 PF07893 DUF1668: Protein of u 97.5 0.014 2.9E-07 57.6 20.2 120 204-332 75-217 (342)
63 PF07893 DUF1668: Protein of u 97.3 0.0085 1.8E-07 59.1 15.9 126 248-383 75-216 (342)
64 PF08450 SGL: SMP-30/Gluconola 97.2 0.033 7.1E-07 52.1 17.9 188 205-428 11-214 (246)
65 PF12768 Rax2: Cortical protei 96.8 0.18 3.9E-06 48.0 18.5 121 252-383 1-130 (281)
66 PF08450 SGL: SMP-30/Gluconola 96.7 0.33 7.1E-06 45.3 19.6 193 160-385 11-223 (246)
67 PF05096 Glu_cyclase_2: Glutam 96.6 0.082 1.8E-06 49.4 14.2 186 204-410 54-250 (264)
68 cd00216 PQQ_DH Dehydrogenases 96.5 1 2.2E-05 46.8 23.7 117 202-329 58-192 (488)
69 PRK04792 tolB translocation pr 96.5 1.2 2.7E-05 45.6 25.7 148 216-383 240-391 (448)
70 cd00216 PQQ_DH Dehydrogenases 96.4 1.5 3.3E-05 45.6 28.1 257 159-438 60-382 (488)
71 PRK00178 tolB translocation pr 96.2 1.6 3.5E-05 44.4 24.0 193 206-428 211-407 (430)
72 PF03089 RAG2: Recombination a 96.2 0.52 1.1E-05 44.0 16.7 103 252-364 41-173 (337)
73 PF12768 Rax2: Cortical protei 96.0 0.15 3.3E-06 48.5 13.2 108 218-331 16-130 (281)
74 PF05096 Glu_cyclase_2: Glutam 96.0 0.17 3.7E-06 47.3 12.9 105 296-428 54-158 (264)
75 TIGR03074 PQQ_membr_DH membran 95.6 4.6 0.0001 44.2 26.3 155 159-326 193-389 (764)
76 TIGR02800 propeller_TolB tol-p 95.5 3.1 6.7E-05 42.0 23.5 146 218-383 214-363 (417)
77 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.5 2.3 5E-05 44.6 20.7 114 245-380 65-197 (527)
78 COG4257 Vgb Streptogramin lyas 95.4 1.7 3.6E-05 40.7 16.7 187 170-382 124-313 (353)
79 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.3 4.5 9.8E-05 42.4 24.9 117 202-329 66-198 (527)
80 KOG2120 SCF ubiquitin ligase, 95.3 0.0049 1.1E-07 57.8 0.1 44 108-151 96-139 (419)
81 KOG0274 Cdc4 and related F-box 95.2 1.2 2.7E-05 46.5 17.5 47 104-150 102-148 (537)
82 PF08268 FBA_3: F-box associat 95.2 0.46 9.9E-06 39.6 12.0 81 294-383 2-89 (129)
83 PRK04922 tolB translocation pr 95.2 4.2 9E-05 41.5 25.9 193 206-428 216-412 (433)
84 KOG2055 WD40 repeat protein [G 95.1 1.1 2.3E-05 44.6 15.3 184 205-428 224-418 (514)
85 PRK05137 tolB translocation pr 95.0 4.8 0.0001 41.1 26.4 199 204-429 211-414 (435)
86 TIGR03866 PQQ_ABC_repeats PQQ- 94.8 3.7 8E-05 38.7 20.8 138 208-377 3-148 (300)
87 PF03089 RAG2: Recombination a 94.6 0.24 5.2E-06 46.2 8.9 76 233-308 81-175 (337)
88 cd00200 WD40 WD40 domain, foun 94.4 4 8.8E-05 37.3 21.6 142 206-376 105-251 (289)
89 TIGR03866 PQQ_ABC_repeats PQQ- 94.2 5 0.00011 37.7 24.2 177 169-378 10-191 (300)
90 PF09910 DUF2139: Uncharacteri 94.1 5.4 0.00012 37.8 22.0 147 218-376 78-232 (339)
91 KOG0315 G-protein beta subunit 93.9 5.2 0.00011 36.9 20.4 230 164-429 55-290 (311)
92 COG1520 FOG: WD40-like repeat 93.9 7.5 0.00016 38.7 23.0 201 202-438 65-276 (370)
93 PF03178 CPSF_A: CPSF A subuni 93.7 3.5 7.5E-05 40.2 16.0 135 266-428 62-205 (321)
94 KOG0310 Conserved WD40 repeat- 93.7 2.8 6.2E-05 41.9 14.8 255 110-413 35-301 (487)
95 PRK00178 tolB translocation pr 93.5 9.8 0.00021 38.7 21.0 148 170-331 223-372 (430)
96 KOG2997 F-box protein FBX9 [Ge 93.4 0.016 3.5E-07 54.6 -0.9 43 110-152 107-154 (366)
97 KOG2055 WD40 repeat protein [G 93.3 2.4 5.2E-05 42.2 13.6 150 249-429 224-376 (514)
98 smart00284 OLF Olfactomedin-li 93.2 7.4 0.00016 36.4 17.1 153 205-377 34-211 (255)
99 cd00200 WD40 WD40 domain, foun 93.0 7 0.00015 35.6 24.3 182 205-428 62-250 (289)
100 PRK11028 6-phosphogluconolacto 92.8 10 0.00022 36.9 24.5 194 162-382 3-215 (330)
101 PF08268 FBA_3: F-box associat 92.6 1.4 3E-05 36.6 9.8 81 353-439 3-87 (129)
102 KOG0310 Conserved WD40 repeat- 92.6 13 0.00027 37.5 17.8 184 202-426 76-267 (487)
103 PRK13684 Ycf48-like protein; P 92.4 12 0.00026 36.8 23.6 209 178-428 117-332 (334)
104 PRK11028 6-phosphogluconolacto 92.3 12 0.00025 36.5 26.3 239 161-429 47-308 (330)
105 PRK03629 tolB translocation pr 92.1 15 0.00033 37.4 25.0 183 217-428 222-407 (429)
106 PRK04922 tolB translocation pr 91.9 16 0.00035 37.2 21.5 140 265-429 227-370 (433)
107 PRK04043 tolB translocation pr 91.5 18 0.00038 36.8 23.2 180 217-429 212-402 (419)
108 COG4257 Vgb Streptogramin lyas 91.4 13 0.00028 35.1 19.8 226 171-441 84-314 (353)
109 TIGR02800 propeller_TolB tol-p 91.4 17 0.00037 36.5 22.9 184 217-429 169-356 (417)
110 PRK05137 tolB translocation pr 90.9 20 0.00044 36.5 23.6 147 217-383 181-331 (435)
111 TIGR02658 TTQ_MADH_Hv methylam 90.9 18 0.00038 35.8 23.8 64 355-429 259-332 (352)
112 KOG2048 WD40 repeat protein [G 90.8 24 0.00051 37.1 23.2 140 295-457 161-302 (691)
113 PLN00181 protein SPA1-RELATED; 90.8 27 0.00058 38.8 20.2 183 207-428 546-739 (793)
114 PRK02889 tolB translocation pr 90.7 21 0.00045 36.3 25.1 160 203-382 204-368 (427)
115 PF06433 Me-amine-dh_H: Methyl 90.7 4.5 9.8E-05 39.4 12.0 225 170-429 67-322 (342)
116 PRK04792 tolB translocation pr 90.6 22 0.00048 36.5 23.6 139 266-429 242-384 (448)
117 PF12217 End_beta_propel: Cata 90.4 9 0.00019 35.6 13.0 204 200-412 79-334 (367)
118 cd00094 HX Hemopexin-like repe 90.2 13 0.00029 33.2 17.4 151 201-377 12-178 (194)
119 KOG0316 Conserved WD40 repeat- 90.1 15 0.00033 33.7 19.8 173 218-429 81-259 (307)
120 PLN02919 haloacid dehalogenase 90.0 42 0.0009 38.6 30.9 249 160-429 579-890 (1057)
121 PF02191 OLF: Olfactomedin-lik 89.8 17 0.00038 34.0 16.4 180 205-409 30-237 (250)
122 PF02191 OLF: Olfactomedin-lik 89.3 13 0.00029 34.7 13.9 142 297-455 30-183 (250)
123 smart00284 OLF Olfactomedin-li 89.3 16 0.00035 34.2 14.2 158 274-454 19-187 (255)
124 COG4946 Uncharacterized protei 89.3 16 0.00034 36.9 14.6 43 363-412 203-245 (668)
125 TIGR03074 PQQ_membr_DH membran 88.8 16 0.00034 40.2 15.9 34 291-331 188-223 (764)
126 PLN00181 protein SPA1-RELATED; 88.5 45 0.00097 37.0 24.1 146 205-376 587-740 (793)
127 COG1520 FOG: WD40-like repeat 88.2 29 0.00063 34.4 27.1 201 160-383 68-279 (370)
128 PF10282 Lactonase: Lactonase, 87.8 30 0.00064 34.1 20.9 165 249-440 155-332 (345)
129 cd00094 HX Hemopexin-like repe 87.2 21 0.00046 31.8 18.5 59 355-429 110-177 (194)
130 PRK13684 Ycf48-like protein; P 86.8 33 0.00072 33.6 25.0 214 162-411 58-279 (334)
131 PF14870 PSII_BNR: Photosynthe 86.5 32 0.0007 33.2 24.1 245 161-451 28-284 (302)
132 KOG0315 G-protein beta subunit 86.0 29 0.00063 32.2 17.0 174 175-376 18-199 (311)
133 PF10282 Lactonase: Lactonase, 85.6 39 0.00084 33.2 23.3 187 173-383 18-233 (345)
134 PF03178 CPSF_A: CPSF A subuni 84.9 8.3 0.00018 37.5 10.4 133 218-373 62-203 (321)
135 COG3823 Glutamine cyclotransfe 84.7 30 0.00066 31.3 15.5 185 201-411 51-249 (262)
136 KOG0291 WD40-repeat-containing 84.4 63 0.0014 34.7 19.5 145 250-429 319-468 (893)
137 PRK01742 tolB translocation pr 84.2 51 0.0011 33.5 21.6 163 217-412 227-392 (429)
138 PF06433 Me-amine-dh_H: Methyl 83.8 14 0.0003 36.0 11.0 98 170-280 17-132 (342)
139 PRK02889 tolB translocation pr 83.6 54 0.0012 33.3 23.4 183 217-429 175-362 (427)
140 PRK04043 tolB translocation pr 83.5 55 0.0012 33.3 21.8 151 169-331 212-366 (419)
141 PLN02919 haloacid dehalogenase 81.8 1.1E+02 0.0023 35.4 21.8 164 248-429 578-772 (1057)
142 PLN03215 ascorbic acid mannose 81.3 61 0.0013 32.3 16.7 98 227-334 189-306 (373)
143 PRK03629 tolB translocation pr 81.0 68 0.0015 32.7 22.6 138 266-429 223-365 (429)
144 TIGR02658 TTQ_MADH_Hv methylam 79.9 66 0.0014 31.8 24.6 110 160-280 12-142 (352)
145 PF02897 Peptidase_S9_N: Proly 79.8 71 0.0015 32.1 17.1 154 207-382 240-412 (414)
146 COG3386 Gluconolactonase [Carb 79.2 64 0.0014 31.3 19.8 178 218-427 47-243 (307)
147 PTZ00421 coronin; Provisional 79.2 85 0.0018 32.7 23.1 154 206-381 138-297 (493)
148 KOG0296 Angio-associated migra 78.8 68 0.0015 31.4 15.6 144 249-429 75-222 (399)
149 PRK01742 tolB translocation pr 77.4 87 0.0019 31.8 16.6 139 170-330 228-369 (429)
150 PTZ00421 coronin; Provisional 77.4 96 0.0021 32.3 20.7 105 205-325 87-201 (493)
151 KOG1036 Mitotic spindle checkp 77.2 70 0.0015 30.6 14.0 130 219-376 36-165 (323)
152 PLN00033 photosystem II stabil 77.0 87 0.0019 31.6 23.6 217 161-411 147-390 (398)
153 KOG3545 Olfactomedin and relat 76.2 67 0.0014 29.9 14.8 160 267-454 11-181 (249)
154 KOG0316 Conserved WD40 repeat- 76.0 66 0.0014 29.7 14.4 136 218-378 39-177 (307)
155 KOG2321 WD40 repeat protein [G 74.3 19 0.00041 37.3 8.8 105 160-277 145-261 (703)
156 KOG3545 Olfactomedin and relat 74.2 75 0.0016 29.5 17.6 199 171-409 11-236 (249)
157 PF07734 FBA_1: F-box associat 74.1 57 0.0012 28.1 14.6 83 294-384 2-93 (164)
158 PRK10115 protease 2; Provision 73.5 1.4E+02 0.0031 32.5 17.7 149 215-384 244-404 (686)
159 KOG0293 WD40 repeat-containing 72.0 1.1E+02 0.0024 30.5 13.7 189 219-450 292-486 (519)
160 PF07734 FBA_1: F-box associat 71.2 67 0.0015 27.7 11.8 85 246-333 2-94 (164)
161 KOG0289 mRNA splicing factor [ 68.7 1.4E+02 0.0029 30.2 13.9 121 244-388 352-476 (506)
162 PRK10115 protease 2; Provision 68.1 1.9E+02 0.0041 31.6 19.8 193 218-441 199-403 (686)
163 KOG0266 WD40 repeat-containing 68.1 1.5E+02 0.0032 30.4 20.3 188 203-429 212-411 (456)
164 KOG1274 WD40 repeat protein [G 67.9 2E+02 0.0043 31.8 18.6 90 160-259 25-117 (933)
165 KOG4378 Nuclear protein COP1 [ 67.6 1.5E+02 0.0033 30.4 13.9 67 348-428 213-281 (673)
166 KOG2321 WD40 repeat protein [G 67.3 1.2E+02 0.0025 31.8 12.5 108 250-377 146-261 (703)
167 KOG1332 Vesicle coat complex C 64.9 1.2E+02 0.0026 28.2 15.0 102 251-383 176-296 (299)
168 COG2706 3-carboxymuconate cycl 64.1 1.5E+02 0.0032 29.0 25.6 151 265-429 166-325 (346)
169 KOG0649 WD40 repeat protein [G 61.9 1.4E+02 0.003 27.9 13.2 139 204-373 125-273 (325)
170 PF08662 eIF2A: Eukaryotic tra 59.2 1.3E+02 0.0028 26.8 10.6 65 205-276 71-135 (194)
171 COG3823 Glutamine cyclotransfe 56.5 99 0.0022 28.1 8.8 108 244-375 50-159 (262)
172 KOG1332 Vesicle coat complex C 55.4 1.8E+02 0.0039 27.1 15.5 72 347-442 224-297 (299)
173 KOG4378 Nuclear protein COP1 [ 54.6 2.6E+02 0.0056 28.8 12.3 88 267-375 188-281 (673)
174 KOG0649 WD40 repeat protein [G 54.4 1.9E+02 0.004 27.0 13.8 152 276-455 99-261 (325)
175 TIGR03032 conserved hypothetic 52.9 40 0.00087 32.6 6.2 140 276-440 136-301 (335)
176 PTZ00420 coronin; Provisional 52.8 3.1E+02 0.0068 29.1 20.9 60 251-325 139-200 (568)
177 PF02897 Peptidase_S9_N: Proly 52.1 2.6E+02 0.0056 28.0 20.8 186 217-429 201-406 (414)
178 KOG0646 WD40 repeat protein [G 51.3 2.8E+02 0.0061 28.2 15.9 23 400-428 286-308 (476)
179 KOG0272 U4/U6 small nuclear ri 50.3 1.9E+02 0.0042 29.0 10.5 126 295-454 312-438 (459)
180 KOG0291 WD40-repeat-containing 49.4 3.8E+02 0.0083 29.2 21.5 153 203-384 359-517 (893)
181 KOG0286 G-protein beta subunit 48.5 2.5E+02 0.0055 26.9 20.0 191 202-428 105-304 (343)
182 smart00564 PQQ beta-propeller 47.5 48 0.001 19.5 4.1 28 400-437 4-31 (33)
183 KOG2048 WD40 repeat protein [G 46.2 4E+02 0.0087 28.5 18.3 68 355-429 440-507 (691)
184 PF14870 PSII_BNR: Photosynthe 44.6 3E+02 0.0065 26.6 20.5 216 162-411 73-295 (302)
185 KOG0263 Transcription initiati 43.9 4.5E+02 0.0098 28.5 12.7 108 247-375 543-650 (707)
186 KOG1897 Damage-specific DNA bi 43.5 5.3E+02 0.012 29.1 16.6 141 250-413 787-934 (1096)
187 PLN00033 photosystem II stabil 43.0 3.7E+02 0.008 27.1 27.9 218 162-411 102-347 (398)
188 COG4946 Uncharacterized protei 42.2 4E+02 0.0087 27.4 22.4 157 156-330 273-439 (668)
189 KOG0292 Vesicle coat complex C 41.7 5.5E+02 0.012 28.8 13.6 135 207-381 219-355 (1202)
190 KOG0641 WD40 repeat protein [G 41.5 2.8E+02 0.0061 25.4 16.7 76 345-428 181-262 (350)
191 KOG0274 Cdc4 and related F-box 40.6 4.7E+02 0.01 27.6 18.9 146 247-429 338-484 (537)
192 KOG3881 Uncharacterized conser 40.5 3.8E+02 0.0083 26.7 12.4 147 206-376 161-322 (412)
193 KOG0294 WD40 repeat-containing 39.5 3.1E+02 0.0067 26.6 9.7 46 323-376 28-73 (362)
194 KOG4649 PQQ (pyrrolo-quinoline 38.5 3.5E+02 0.0076 25.6 13.4 92 266-379 33-130 (354)
195 PF13088 BNR_2: BNR repeat-lik 35.2 3.7E+02 0.008 24.9 13.5 191 204-407 57-275 (275)
196 PF13570 PQQ_3: PQQ-like domai 35.1 1.1E+02 0.0024 19.0 4.5 24 351-375 17-40 (40)
197 KOG4499 Ca2+-binding protein R 34.3 3.9E+02 0.0085 24.9 9.5 34 355-388 222-255 (310)
198 KOG0263 Transcription initiati 33.5 3.9E+02 0.0085 28.9 10.4 107 294-428 542-650 (707)
199 PF12217 End_beta_propel: Cata 33.2 4.2E+02 0.0092 25.0 16.5 229 201-442 21-303 (367)
200 PTZ00420 coronin; Provisional 33.0 6.3E+02 0.014 26.9 22.7 151 207-381 139-300 (568)
201 KOG0299 U3 snoRNP-associated p 32.7 5.5E+02 0.012 26.2 11.1 134 246-413 210-348 (479)
202 PF13088 BNR_2: BNR repeat-lik 32.7 3.2E+02 0.0069 25.3 9.3 122 177-302 142-275 (275)
203 PF03088 Str_synth: Strictosid 30.2 1.2E+02 0.0027 23.3 4.8 18 365-382 36-53 (89)
204 KOG4649 PQQ (pyrrolo-quinoline 30.2 4.8E+02 0.01 24.7 11.3 56 313-382 32-91 (354)
205 PF07433 DUF1513: Protein of u 30.0 5.2E+02 0.011 25.0 10.5 116 236-358 1-120 (305)
206 PF08662 eIF2A: Eukaryotic tra 29.9 3.7E+02 0.0079 23.8 8.6 62 356-428 72-134 (194)
207 PF04616 Glyco_hydro_43: Glyco 29.9 4.6E+02 0.01 24.4 16.5 162 239-411 9-198 (286)
208 PF15525 DUF4652: Domain of un 29.5 4.1E+02 0.0089 23.7 11.1 73 261-334 83-160 (200)
209 PF09910 DUF2139: Uncharacteri 29.1 5.4E+02 0.012 24.9 16.4 117 243-378 40-185 (339)
210 COG0823 TolB Periplasmic compo 28.3 6.5E+02 0.014 25.6 14.1 146 219-384 219-369 (425)
211 PF11768 DUF3312: Protein of u 28.2 3.8E+02 0.0083 28.1 9.1 81 313-413 235-321 (545)
212 PF03022 MRJP: Major royal jel 27.9 5.4E+02 0.012 24.5 12.9 77 249-331 11-106 (287)
213 KOG0281 Beta-TrCP (transducin 27.9 2.2E+02 0.0047 28.0 6.8 179 204-428 205-389 (499)
214 COG3386 Gluconolactonase [Carb 27.8 5.6E+02 0.012 24.8 22.8 213 168-413 45-278 (307)
215 KOG0639 Transducin-like enhanc 27.1 2.5E+02 0.0055 28.9 7.4 99 295-412 474-572 (705)
216 KOG4341 F-box protein containi 25.7 20 0.00044 35.9 -0.4 43 109-151 71-113 (483)
217 KOG0265 U5 snRNP-specific prot 25.6 6.1E+02 0.013 24.4 12.0 62 205-280 58-126 (338)
218 KOG0296 Angio-associated migra 25.2 6.8E+02 0.015 24.8 18.6 143 205-377 75-223 (399)
219 PF15525 DUF4652: Domain of un 25.1 5E+02 0.011 23.2 10.4 71 218-290 88-164 (200)
220 PRK01029 tolB translocation pr 25.0 7.3E+02 0.016 25.1 14.6 119 205-331 292-412 (428)
221 PF15492 Nbas_N: Neuroblastoma 24.2 6.3E+02 0.014 24.1 14.8 20 396-415 150-171 (282)
222 COG0823 TolB Periplasmic compo 23.8 7.9E+02 0.017 25.0 16.1 120 204-331 247-368 (425)
223 KOG0294 WD40 repeat-containing 23.7 4.9E+02 0.011 25.2 8.3 46 375-429 28-73 (362)
224 PF13013 F-box-like_2: F-box-l 23.6 30 0.00065 27.8 0.3 29 110-138 22-50 (109)
225 KOG0265 U5 snRNP-specific prot 23.4 6.8E+02 0.015 24.2 12.0 61 249-328 58-126 (338)
226 PF14583 Pectate_lyase22: Olig 23.2 7.7E+02 0.017 24.7 11.2 132 218-364 168-302 (386)
227 PF03022 MRJP: Major royal jel 23.0 6.6E+02 0.014 23.9 17.7 184 218-411 34-255 (287)
228 KOG0772 Uncharacterized conser 22.7 8.9E+02 0.019 25.3 17.3 124 287-428 316-446 (641)
229 PF01436 NHL: NHL repeat; Int 22.6 1.7E+02 0.0036 16.8 4.1 22 350-371 6-28 (28)
230 KOG1446 Histone H3 (Lys4) meth 21.8 7.3E+02 0.016 23.9 23.3 111 160-280 26-136 (311)
231 PF14781 BBS2_N: Ciliary BBSom 21.1 4E+02 0.0086 22.4 6.4 60 356-428 64-126 (136)
232 KOG0640 mRNA cleavage stimulat 21.0 7.7E+02 0.017 23.9 10.6 68 160-230 228-295 (430)
233 PF02239 Cytochrom_D1: Cytochr 20.8 8.3E+02 0.018 24.2 11.4 186 218-429 16-204 (369)
234 KOG0278 Serine/threonine kinas 20.7 7.2E+02 0.016 23.4 14.8 128 217-371 164-294 (334)
235 KOG0640 mRNA cleavage stimulat 20.6 4.2E+02 0.009 25.7 7.1 64 355-428 227-292 (430)
236 COG2088 SpoVG Uncharacterized 20.4 51 0.0011 25.1 0.9 26 22-47 21-46 (95)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.3e-46 Score=389.29 Aligned_cols=396 Identities=23% Similarity=0.304 Sum_probs=294.2
Q ss_pred CceEeeecCcEEEeccc---------------------ccccchHHHHHhhHhhhhhhhhccCCccccceeeeccccccc
Q 012755 20 SSVMFDFQNHVITDVSK---------------------HFGQDLKFVKEKLQMLVHILSTRRNSLKDGIEDLISKEMLIS 78 (457)
Q Consensus 20 ~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 78 (457)
+...+++.||+=++.+. .+.+..-|++-...++..+|+.-..+ .+.|+.+++..+...
T Consensus 130 L~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L~~~~l~~ll~~d~l~-v~~E~~vf~a~~~Wv 208 (571)
T KOG4441|consen 130 LESQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLLSLEELIGLLSSDDLN-VDSEEEVFEAAMRWV 208 (571)
T ss_pred HHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCCCHHHHHhhccccCCC-cCCHHHHHHHHHHHH
Confidence 34567888998655443 33333344444444444444444333 344455555555444
Q ss_pred cccccccccccceeeccCCCCCCCCCCCCCCCCCCcHHHHhhhceecccccc-Ccccc-cC--hhhhhhhccC-cchhhh
Q 012755 79 NLDRAGLKNKCPVVITKNGDKHNCQASDDSFLPGLHDDATLDILAWSSRSDY-PTLSC-LN--RKFKSLIASG-YLYKLR 153 (457)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPddl~~~iLarlp~~~~-~~l~~-v~--k~w~~li~s~-~~~~~r 153 (457)
..+....++.-+ ......-+|-||...+.++....+...- ..++. +. +.+..+-... .....|
T Consensus 209 ~~d~~~R~~~~~------------~ll~~vr~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~~~~~~~~~~~~~ 276 (571)
T KOG4441|consen 209 KHDFEEREEHLP------------ALLEAVRLPLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKYHLLPQRRPVMQSPR 276 (571)
T ss_pred hcCHhhHHHHHH------------HHHHhcCccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhhCcccCccccCCC
Confidence 433211111111 1222333578888888887776652110 11111 00 1111111111 122233
Q ss_pred hccc-ccccEEEEEecC-------ccEEEEeCCCCcEEeCCCCCCCccccCCCeeeEEeCCEEEEEceecC----CcEEE
Q 012755 154 RQLG-MVEHWVYLACIL-------MPWEAFDPLRQRWMRLPRMQCDECFTSADKESLAVGTQLLVFGRELS----GFAIW 221 (457)
Q Consensus 154 ~~~~-~~~~~l~~~~~~-------~~~~~ydp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~----~~~v~ 221 (457)
.... .....||++||. +.+.+|||.++.|..+++||.+|..+. ++++++.||++||.+. .+.++
T Consensus 277 t~~r~~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~----~~~~~~~lYv~GG~~~~~~~l~~ve 352 (571)
T KOG4441|consen 277 TRPRRSVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVG----VAVLNGKLYVVGGYDSGSDRLSSVE 352 (571)
T ss_pred cccCcCCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCccccccc----EEEECCEEEEEccccCCCcccceEE
Confidence 3333 456788988873 568899999999999999999888554 5889999999999872 37899
Q ss_pred EEECCCCcEEeCCCCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCcceeEEEECCEEE
Q 012755 222 MYSLIANCWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFMDGKFY 301 (457)
Q Consensus 222 ~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~iy 301 (457)
+|||.+++|+.+|+|+.+|..+++++++|.||++||+++. ..++++|+|||.+++|+.+++|+.+|..+++++++|+||
T Consensus 353 ~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~-~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iY 431 (571)
T KOG4441|consen 353 RYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGE-KSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLY 431 (571)
T ss_pred EecCCCCceeccCCccCccccceeEEECCEEEEEeccccc-cccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEE
Confidence 9999999999999999999999999999999999999965 678999999999999999999999999999999999999
Q ss_pred EEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecC-----CCeEEEEECCCC
Q 012755 302 IIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQA-----TNVVKKYNKTNN 376 (457)
Q Consensus 302 v~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~-----~~~v~~Yd~~~~ 376 (457)
++||.++....++++++|||.+++|+.+++|+. .|.++++++++++||++||. ..+|+.|||+++
T Consensus 432 i~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~----------~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 432 IIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT----------RRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETN 501 (571)
T ss_pred EEcCcCCCccccceEEEEcCCCCceeecCCccc----------ccccceEEEECCEEEEECCccCCCccceEEEEcCCCC
Confidence 999998876678999999999999999999998 89999999999999999984 346999999999
Q ss_pred cEEEeccCCCccCCCCcceEEEEEeCCEEEEEcCcCCCCCceEEEEEeeCCCCCCCCCCeeEeccccccCceEEeeeee
Q 012755 377 SWTVVKRLPVRANSFNGWGLAFKACGNSLLVIGGHRELQGEIIVLHSWDPTDGNSGEAQWNELAVRERAGAFVYNCAVM 455 (457)
Q Consensus 377 ~W~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~~~~~~v~~y~~~~~~w~~~~W~~l~~~~~~~~~~~~~~~~ 455 (457)
+|+.+++|+.++. ++++++.+++||++||.++.. ..+.++.|||++| +|+.++. +.......+|+++
T Consensus 502 ~W~~v~~m~~~rs-----~~g~~~~~~~ly~vGG~~~~~-~l~~ve~ydp~~d-----~W~~~~~-~~~~~~~~~~~~~ 568 (571)
T KOG4441|consen 502 QWTMVAPMTSPRS-----AVGVVVLGGKLYAVGGFDGNN-NLNTVECYDPETD-----TWTEVTE-PESGRGGAGVAVI 568 (571)
T ss_pred ceeEcccCccccc-----cccEEEECCEEEEEecccCcc-ccceeEEcCCCCC-----ceeeCCC-ccccccCcceEEe
Confidence 9999998988764 245678999999999987654 6789999999999 8999988 5566666666554
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=5.7e-42 Score=356.22 Aligned_cols=245 Identities=16% Similarity=0.297 Sum_probs=214.0
Q ss_pred ccEEEEeCCCCcEEeCCCCCCCccccCCCeeeEEeCCEEEEEceec----CCcEEEEEECCCCcEEeCCCCCCCccceeE
Q 012755 170 MPWEAFDPLRQRWMRLPRMQCDECFTSADKESLAVGTQLLVFGREL----SGFAIWMYSLIANCWSKCPQMNLPRCLFGS 245 (457)
Q Consensus 170 ~~~~~ydp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~----~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~ 245 (457)
..+++|||.+++|..++++|.++..+. ++++++.||++||.. ..+.+++|||.+++|..+++||.+|..+++
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~----~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~ 347 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIPNHIINYA----SAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSL 347 (557)
T ss_pred CCEEEEeCCCCeEEECCCCCccccceE----EEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeE
Confidence 357899999999999999998876543 588899999999964 236799999999999999999999999999
Q ss_pred EeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCcceeEEEECCEEEEEeccCCCC---------------
Q 012755 246 SSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFMDGKFYIIGGMSSPT--------------- 310 (457)
Q Consensus 246 ~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~iyv~GG~~~~~--------------- 310 (457)
++++++||++||.++. ...+++++|||.+++|+.+++||.+|..+++++++|+||++||.++..
T Consensus 348 ~~~~g~IYviGG~~~~-~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 348 AVIDDTIYAIGGQNGT-NVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred EEECCEEEEECCcCCC-CCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccc
Confidence 9999999999998754 356889999999999999999999999999999999999999986421
Q ss_pred --CCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecCC------CeEEEEECCC-CcEEEe
Q 012755 311 --DPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQAT------NVVKKYNKTN-NSWTVV 381 (457)
Q Consensus 311 --~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~~------~~v~~Yd~~~-~~W~~v 381 (457)
...+.+++|||++++|+.+++|+. +|..+++++++|+||++||.. ..+++|||++ ++|+.+
T Consensus 427 ~~~~~~~ve~YDP~td~W~~v~~m~~----------~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~ 496 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIWETLPNFWT----------GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELI 496 (557)
T ss_pred cccccceEEEECCCCCeEeecCCCCc----------ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEc
Confidence 125789999999999999999988 788899999999999999852 3589999999 899999
Q ss_pred ccCCCccCCCCcceEEEEEeCCEEEEEcCcCCCCCceEEEEEeeCCCCCCCCCCeeEecccc
Q 012755 382 KRLPVRANSFNGWGLAFKACGNSLLVIGGHRELQGEIIVLHSWDPTDGNSGEAQWNELAVRE 443 (457)
Q Consensus 382 ~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~~~~~~v~~y~~~~~~w~~~~W~~l~~~~ 443 (457)
++||.++. ++.+++++|+||++||.++. ..+++|||.++ +|+.++..-
T Consensus 497 ~~m~~~r~-----~~~~~~~~~~iyv~Gg~~~~----~~~e~yd~~~~-----~W~~~~~~~ 544 (557)
T PHA02713 497 TTTESRLS-----ALHTILHDNTIMMLHCYESY----MLQDTFNVYTY-----EWNHICHQH 544 (557)
T ss_pred cccCcccc-----cceeEEECCEEEEEeeecce----eehhhcCcccc-----cccchhhhc
Confidence 99998775 24567889999999999863 37999999998 899887653
No 3
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=2.7e-36 Score=297.69 Aligned_cols=280 Identities=19% Similarity=0.221 Sum_probs=210.8
Q ss_pred hhhhhccC-cchhhhhccccc--ccEEEEEecC--------ccEEEEeCCCCcEEeCCCCCC-CccccCCCeeeEEeCCE
Q 012755 140 FKSLIASG-YLYKLRRQLGMV--EHWVYLACIL--------MPWEAFDPLRQRWMRLPRMQC-DECFTSADKESLAVGTQ 207 (457)
Q Consensus 140 w~~li~s~-~~~~~r~~~~~~--~~~l~~~~~~--------~~~~~ydp~~~~W~~l~~~p~-~~~~~~~~~~~~~~~~~ 207 (457)
|..+.... ..+..|..++.. ++.||++||. +++++||+.+++|..+++++. |+. ......+++++++
T Consensus 9 W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~-~~~~~~~~~~~~~ 87 (341)
T PLN02153 9 WIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRI-SCLGVRMVAVGTK 87 (341)
T ss_pred EEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCC-ccCceEEEEECCE
Confidence 66655432 234455555443 7889999873 479999999999999987643 332 1112346888999
Q ss_pred EEEEceecCC---cEEEEEECCCCcEEeCCCC-----CCCccceeEEeeCCEEEEEeeecCCC-----CccceEEEEeCC
Q 012755 208 LLVFGRELSG---FAIWMYSLIANCWSKCPQM-----NLPRCLFGSSSLGEVAIVAGGTDKNG-----CILKSAELYNSE 274 (457)
Q Consensus 208 lyv~GG~~~~---~~v~~yd~~t~~W~~l~~l-----p~~r~~~~~~~~~~~iyv~GG~~~~~-----~~~~~v~~yd~~ 274 (457)
||++||.... +++++||+.+++|+.+++| |.+|..|++++++++|||+||.+..+ ..++++++||++
T Consensus 88 iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~ 167 (341)
T PLN02153 88 LYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIA 167 (341)
T ss_pred EEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECC
Confidence 9999996432 5899999999999999887 88999999999999999999986432 235789999999
Q ss_pred CCcEEECCCCC---CCCcceeEEEECCEEEEEeccCCC-------CCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCC
Q 012755 275 LGTWETLPDMN---LPRKLCSGFFMDGKFYIIGGMSSP-------TDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPA 344 (457)
Q Consensus 275 t~~W~~~~~~p---~~r~~~~~~~~~g~iyv~GG~~~~-------~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~ 344 (457)
+++|+.++++. .+|..+++++++++|||+||.... ....+.+++||+++++|++++.... .|.
T Consensus 168 ~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~-------~P~ 240 (341)
T PLN02153 168 DGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGA-------KPS 240 (341)
T ss_pred CCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCC-------CCC
Confidence 99999998764 678899999999999999986421 1125789999999999999975322 133
Q ss_pred CCCCCEEEEECCEEEEEecC--------------CCeEEEEECCCCcEEEeccC---CCccCCCCcceEEEEEeCCEEEE
Q 012755 345 MSSPPLVAVVNNQLYSADQA--------------TNVVKKYNKTNNSWTVVKRL---PVRANSFNGWGLAFKACGNSLLV 407 (457)
Q Consensus 345 ~r~~~~~~~~~g~ly~~gg~--------------~~~v~~Yd~~~~~W~~v~~~---p~~~~~~~~~~~~~~~~~g~lyv 407 (457)
+|..+++++++++||++||. .+++++||+++++|+.+... |.++..+ .++.+.+..+++|||
T Consensus 241 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~-~~~~~~v~~~~~~~~ 319 (341)
T PLN02153 241 ARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWT-AYTTATVYGKNGLLM 319 (341)
T ss_pred CcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccc-cccccccCCcceEEE
Confidence 78889999999999999995 24899999999999998632 2222111 223333333458999
Q ss_pred EcCcCCCCCceEEEEEeeCCC
Q 012755 408 IGGHRELQGEIIVLHSWDPTD 428 (457)
Q Consensus 408 ~GG~~~~~~~~~~v~~y~~~~ 428 (457)
+||..+......+++.|+...
T Consensus 320 ~gG~~~~~~~~~~~~~~~~~~ 340 (341)
T PLN02153 320 HGGKLPTNERTDDLYFYAVNS 340 (341)
T ss_pred EcCcCCCCccccceEEEeccc
Confidence 999987655678999997653
No 4
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=8.8e-37 Score=319.11 Aligned_cols=250 Identities=18% Similarity=0.291 Sum_probs=211.4
Q ss_pred cEEEEeCCCCcEEeCCCCCCCccccCCCeeeEEeCCEEEEEceecCC----cEEEEEECCCCcEEeCCCCCCCccceeEE
Q 012755 171 PWEAFDPLRQRWMRLPRMQCDECFTSADKESLAVGTQLLVFGRELSG----FAIWMYSLIANCWSKCPQMNLPRCLFGSS 246 (457)
Q Consensus 171 ~~~~ydp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~----~~v~~yd~~t~~W~~l~~lp~~r~~~~~~ 246 (457)
....|++..++|..+++.|...+ +.+++.++.||++||.... ++++.||+.+++|..+++||.+|..|+++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~ 339 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHYVYC-----FGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT 339 (534)
T ss_pred eeeecchhhhhcccccCcccccc-----ceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE
Confidence 45678888899988876653321 1358899999999997432 57999999999999999999999999999
Q ss_pred eeCCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCcceeEEEECCEEEEEeccCCCCCCCceEEEEECCCCce
Q 012755 247 SLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTW 326 (457)
Q Consensus 247 ~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W 326 (457)
+++++||++||.++. ...+++++||+.+++|+.++++|.+|..+++++++|+||++||........+.+++||+.+++|
T Consensus 340 ~~~~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 340 VFNNRIYVIGGIYNS-ISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred EECCEEEEEeCCCCC-EecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 999999999998743 4578999999999999999999999999999999999999999765544578899999999999
Q ss_pred EEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecC--------CCeEEEEECCCCcEEEeccCCCccCCCCcceEEE
Q 012755 327 KRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQA--------TNVVKKYNKTNNSWTVVKRLPVRANSFNGWGLAF 398 (457)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~--------~~~v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~~ 398 (457)
+.++++|. +|..+++++.+++||++||. .+.+++||+++++|+.++.+|.++. +.++
T Consensus 419 ~~~~~~p~----------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~-----~~~~ 483 (534)
T PHA03098 419 SKGSPLPI----------SHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRI-----NASL 483 (534)
T ss_pred eecCCCCc----------cccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccc-----cceE
Confidence 99998877 78888999999999999984 2459999999999999998886653 2345
Q ss_pred EEeCCEEEEEcCcCCCCCceEEEEEeeCCCCCCCCCCeeEeccccccCc
Q 012755 399 KACGNSLLVIGGHRELQGEIIVLHSWDPTDGNSGEAQWNELAVRERAGA 447 (457)
Q Consensus 399 ~~~~g~lyv~GG~~~~~~~~~~v~~y~~~~~~w~~~~W~~l~~~~~~~~ 447 (457)
+.++++|||+||..... ....+++||++++ +|..++.+|++..
T Consensus 484 ~~~~~~iyv~GG~~~~~-~~~~v~~yd~~~~-----~W~~~~~~p~~~~ 526 (534)
T PHA03098 484 CIFNNKIYVVGGDKYEY-YINEIEVYDDKTN-----TWTLFCKFPKVIG 526 (534)
T ss_pred EEECCEEEEEcCCcCCc-ccceeEEEeCCCC-----EEEecCCCccccc
Confidence 67799999999987543 3568999999998 8999988775543
No 5
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=7.4e-37 Score=316.70 Aligned_cols=230 Identities=26% Similarity=0.434 Sum_probs=203.8
Q ss_pred EeCCEEEEEceecC----CcEEEEEECCCCcEEeCCCCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcE
Q 012755 203 AVGTQLLVFGRELS----GFAIWMYSLIANCWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTW 278 (457)
Q Consensus 203 ~~~~~lyv~GG~~~----~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W 278 (457)
...+.||++||... .+.+..|||.+++|..+++||.+|..+++++++++||++||++.....++++++||+.+++|
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCce
Confidence 45688999999875 37899999999999999999999999999999999999999984335689999999999999
Q ss_pred EECCCCCCCCcceeEEEECCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEE
Q 012755 279 ETLPDMNLPRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQL 358 (457)
Q Consensus 279 ~~~~~~p~~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~l 358 (457)
..+++|+.+|..+++++++|+||++||.++.. ..+++++|||.+++|+.+++|+. .|.++++++++|+|
T Consensus 362 ~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~-~l~svE~YDp~~~~W~~va~m~~----------~r~~~gv~~~~g~i 430 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEK-SLNSVECYDPVTNKWTPVAPMLT----------RRSGHGVAVLGGKL 430 (571)
T ss_pred eccCCccCccccceeEEECCEEEEEecccccc-ccccEEEecCCCCcccccCCCCc----------ceeeeEEEEECCEE
Confidence 99999999999999999999999999999655 68899999999999999999988 89999999999999
Q ss_pred EEEec------CCCeEEEEECCCCcEEEeccCCCccCCCCcceEEEEEeCCEEEEEcCcCCCCCceEEEEEeeCCCCCCC
Q 012755 359 YSADQ------ATNVVKKYNKTNNSWTVVKRLPVRANSFNGWGLAFKACGNSLLVIGGHRELQGEIIVLHSWDPTDGNSG 432 (457)
Q Consensus 359 y~~gg------~~~~v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~~~~~~v~~y~~~~~~w~ 432 (457)
|++|| ..+++++|||.+++|+.+++|+..|. + .++++++++||++||+++ ......++.|||+++
T Consensus 431 Yi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~---~--~g~a~~~~~iYvvGG~~~-~~~~~~VE~ydp~~~--- 501 (571)
T KOG4441|consen 431 YIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS---G--FGVAVLNGKIYVVGGFDG-TSALSSVERYDPETN--- 501 (571)
T ss_pred EEEcCcCCCccccceEEEEcCCCCceeecCCcccccc---c--ceEEEECCEEEEECCccC-CCccceEEEEcCCCC---
Confidence 99998 45789999999999999999998875 3 346789999999999998 445567999999998
Q ss_pred CCCeeEeccccccCceEEeeee
Q 012755 433 EAQWNELAVRERAGAFVYNCAV 454 (457)
Q Consensus 433 ~~~W~~l~~~~~~~~~~~~~~~ 454 (457)
+|..++.++.....+..+++
T Consensus 502 --~W~~v~~m~~~rs~~g~~~~ 521 (571)
T KOG4441|consen 502 --QWTMVAPMTSPRSAVGVVVL 521 (571)
T ss_pred --ceeEcccCccccccccEEEE
Confidence 89999877655555444443
No 6
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=5.3e-35 Score=288.44 Aligned_cols=242 Identities=20% Similarity=0.357 Sum_probs=194.1
Q ss_pred CCCCcEEeCCC----CCCCccccCCCeeeEEeCCEEEEEceecC-----CcEEEEEECCCCcEEeCCCCC-CCc---cce
Q 012755 177 PLRQRWMRLPR----MQCDECFTSADKESLAVGTQLLVFGRELS-----GFAIWMYSLIANCWSKCPQMN-LPR---CLF 243 (457)
Q Consensus 177 p~~~~W~~l~~----~p~~~~~~~~~~~~~~~~~~lyv~GG~~~-----~~~v~~yd~~t~~W~~l~~lp-~~r---~~~ 243 (457)
+...+|.++.. +|.+|..+. ++++++.|||+||... .+++++||+.+++|+.+++++ .|| ..|
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~----~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~ 79 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHG----IAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGV 79 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcce----EEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCce
Confidence 35678999976 677777654 4788999999999742 258999999999999998764 344 368
Q ss_pred eEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCC-----CCCCcceeEEEECCEEEEEeccCCCC-----CCC
Q 012755 244 GSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDM-----NLPRKLCSGFFMDGKFYIIGGMSSPT-----DPL 313 (457)
Q Consensus 244 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~-----p~~r~~~~~~~~~g~iyv~GG~~~~~-----~~~ 313 (457)
++++++++||++||.+.. ..++++++||+++++|+.+++| |.+|..|++++.+++|||+||.+... ...
T Consensus 80 ~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 158 (341)
T PLN02153 80 RMVAVGTKLYIFGGRDEK-REFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERF 158 (341)
T ss_pred EEEEECCEEEEECCCCCC-CccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCccc
Confidence 889999999999998754 3467999999999999999877 78899999999999999999986432 134
Q ss_pred ceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecC-------------CCeEEEEECCCCcEEE
Q 012755 314 TCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQA-------------TNVVKKYNKTNNSWTV 380 (457)
Q Consensus 314 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~-------------~~~v~~Yd~~~~~W~~ 380 (457)
+++++||+++++|+.++.+.. .+.+|..+++++++++||++||. .+++++||+++++|++
T Consensus 159 ~~v~~yd~~~~~W~~l~~~~~-------~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~ 231 (341)
T PLN02153 159 RTIEAYNIADGKWVQLPDPGE-------NFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTE 231 (341)
T ss_pred ceEEEEECCCCeEeeCCCCCC-------CCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEe
Confidence 689999999999999987653 13378888999999999999863 3679999999999999
Q ss_pred ecc---CCCccCCCCcceEEEEEeCCEEEEEcCcCCC--------CCceEEEEEeeCCCCCCCCCCeeEec
Q 012755 381 VKR---LPVRANSFNGWGLAFKACGNSLLVIGGHREL--------QGEIIVLHSWDPTDGNSGEAQWNELA 440 (457)
Q Consensus 381 v~~---~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~~--------~~~~~~v~~y~~~~~~w~~~~W~~l~ 440 (457)
++. +|.++. ++++++++++||||||.... .....++++||++++ +|+.+.
T Consensus 232 ~~~~g~~P~~r~-----~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~-----~W~~~~ 292 (341)
T PLN02153 232 VETTGAKPSARS-----VFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL-----VWEKLG 292 (341)
T ss_pred ccccCCCCCCcc-----eeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCcc-----EEEecc
Confidence 975 344432 34567889999999997421 122458999999998 798886
No 7
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.4e-34 Score=295.93 Aligned_cols=280 Identities=16% Similarity=0.181 Sum_probs=216.5
Q ss_pred hhhhhhhccCcchhhhhccccc--ccEEEEEecC--------ccEEEEeCCCCcEEeCCCCC-CCccccCCCeeeEEeCC
Q 012755 138 RKFKSLIASGYLYKLRRQLGMV--EHWVYLACIL--------MPWEAFDPLRQRWMRLPRMQ-CDECFTSADKESLAVGT 206 (457)
Q Consensus 138 k~w~~li~s~~~~~~r~~~~~~--~~~l~~~~~~--------~~~~~ydp~~~~W~~l~~~p-~~~~~~~~~~~~~~~~~ 206 (457)
.+|..+......+..|..+... ++.||++++. +++++||+.+++|..++.+. .|+. ......++++++
T Consensus 151 ~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~-~~~~~~~v~~~~ 229 (470)
T PLN02193 151 GKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHL-SCLGVRMVSIGS 229 (470)
T ss_pred ceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCC-cccceEEEEECC
Confidence 4688776655556666666654 7899999873 46999999999999887542 2211 111224678899
Q ss_pred EEEEEceecC---CcEEEEEECCCCcEEeCCCC---CCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEE
Q 012755 207 QLLVFGRELS---GFAIWMYSLIANCWSKCPQM---NLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWET 280 (457)
Q Consensus 207 ~lyv~GG~~~---~~~v~~yd~~t~~W~~l~~l---p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~ 280 (457)
+||++||... .+++++||+.+++|++++++ |.+|..|++++++++|||+||.+.. ..++++++||+.+++|+.
T Consensus 230 ~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~-~~~~~~~~yd~~t~~W~~ 308 (470)
T PLN02193 230 TLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSAT-ARLKTLDSYNIVDKKWFH 308 (470)
T ss_pred EEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCC-CCcceEEEEECCCCEEEe
Confidence 9999999753 37899999999999999887 8899999999999999999998754 356899999999999999
Q ss_pred CCC---CCCCCcceeEEEECCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCE
Q 012755 281 LPD---MNLPRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQ 357 (457)
Q Consensus 281 ~~~---~p~~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ 357 (457)
++. +|.+|..+++++++++||++||.++. ..+++++||+++++|+.++.+.. .|.+|..+++++++++
T Consensus 309 ~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~--~~~dv~~yD~~t~~W~~~~~~g~-------~P~~R~~~~~~~~~~~ 379 (470)
T PLN02193 309 CSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC--EVDDVHYYDPVQDKWTQVETFGV-------RPSERSVFASAAVGKH 379 (470)
T ss_pred CCCCCCCCCCCCCcEEEEECCcEEEEECCCCC--ccCceEEEECCCCEEEEeccCCC-------CCCCcceeEEEEECCE
Confidence 864 56789999999999999999997643 36889999999999999986532 2337888999999999
Q ss_pred EEEEecCC--------------CeEEEEECCCCcEEEeccCCC---ccCCCCcceEEEEEe--CCEEEEEcCcCCCCCce
Q 012755 358 LYSADQAT--------------NVVKKYNKTNNSWTVVKRLPV---RANSFNGWGLAFKAC--GNSLLVIGGHRELQGEI 418 (457)
Q Consensus 358 ly~~gg~~--------------~~v~~Yd~~~~~W~~v~~~p~---~~~~~~~~~~~~~~~--~g~lyv~GG~~~~~~~~ 418 (457)
||++||.. +++++||+++++|+.+..++. .+..+..++++...+ ++.|+++||....+...
T Consensus 380 iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~ 459 (470)
T PLN02193 380 IVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRF 459 (470)
T ss_pred EEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCccccc
Confidence 99999842 479999999999999976542 112121222222223 34599999998766667
Q ss_pred EEEEEeeCCC
Q 012755 419 IVLHSWDPTD 428 (457)
Q Consensus 419 ~~v~~y~~~~ 428 (457)
.++|.+++++
T Consensus 460 ~D~~~~~~~~ 469 (470)
T PLN02193 460 DDLFFYGIDS 469 (470)
T ss_pred cceEEEecCC
Confidence 8999998764
No 8
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=5.1e-35 Score=304.21 Aligned_cols=218 Identities=18% Similarity=0.216 Sum_probs=188.4
Q ss_pred cEEEEEECCCCcEEeCCCCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCcceeEEEEC
Q 012755 218 FAIWMYSLIANCWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFMD 297 (457)
Q Consensus 218 ~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~ 297 (457)
..+++|||.+++|..+++||.+|..+++++++++|||+||.+......+++++||+.+++|..+++||.+|..+++++++
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~ 351 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID 351 (557)
T ss_pred CCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence 46899999999999999999999999999999999999998643345789999999999999999999999999999999
Q ss_pred CEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecCC------------
Q 012755 298 GKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQAT------------ 365 (457)
Q Consensus 298 g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~~------------ 365 (457)
|+||++||.++.. ..+++++|||.+++|+.+++|+. +|..+++++++|+||++||..
T Consensus 352 g~IYviGG~~~~~-~~~sve~Ydp~~~~W~~~~~mp~----------~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~ 420 (557)
T PHA02713 352 DTIYAIGGQNGTN-VERTIECYTMGDDKWKMLPDMPI----------ALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMN 420 (557)
T ss_pred CEEEEECCcCCCC-CCceEEEEECCCCeEEECCCCCc----------ccccccEEEECCEEEEEeCCCcccccccccccc
Confidence 9999999986543 46789999999999999999988 888899999999999999842
Q ss_pred -----------CeEEEEECCCCcEEEeccCCCccCCCCcceEEEEEeCCEEEEEcCcCCCCCceEEEEEeeCCC-CCCCC
Q 012755 366 -----------NVVKKYNKTNNSWTVVKRLPVRANSFNGWGLAFKACGNSLLVIGGHRELQGEIIVLHSWDPTD-GNSGE 433 (457)
Q Consensus 366 -----------~~v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~~~~~~v~~y~~~~-~~w~~ 433 (457)
+.+++|||++++|+.+++|+.++.. +++++++|+|||+||.++.......+++|||++ +
T Consensus 421 ~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~-----~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~---- 491 (557)
T PHA02713 421 SIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR-----PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYN---- 491 (557)
T ss_pred cccccccccccceEEEECCCCCeEeecCCCCccccc-----CcEEEECCEEEEEeCCCCCCccceeEEEecCCCCC----
Confidence 5699999999999999999887642 346789999999999875443345689999998 7
Q ss_pred CCeeEeccccccCceEEeeeeec
Q 012755 434 AQWNELAVRERAGAFVYNCAVMG 456 (457)
Q Consensus 434 ~~W~~l~~~~~~~~~~~~~~~~~ 456 (457)
+|+.++.+|..+......++.|
T Consensus 492 -~W~~~~~m~~~r~~~~~~~~~~ 513 (557)
T PHA02713 492 -GWELITTTESRLSALHTILHDN 513 (557)
T ss_pred -CeeEccccCcccccceeEEECC
Confidence 8999999887666655555544
No 9
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=1.7e-34 Score=285.64 Aligned_cols=254 Identities=18% Similarity=0.222 Sum_probs=194.7
Q ss_pred cccEEEEEecC--ccEEEEeC--CCCcEEeCCCCCC-CccccCCCeeeEEeCCEEEEEceecC---------CcEEEEEE
Q 012755 159 VEHWVYLACIL--MPWEAFDP--LRQRWMRLPRMQC-DECFTSADKESLAVGTQLLVFGRELS---------GFAIWMYS 224 (457)
Q Consensus 159 ~~~~l~~~~~~--~~~~~ydp--~~~~W~~l~~~p~-~~~~~~~~~~~~~~~~~lyv~GG~~~---------~~~v~~yd 224 (457)
.++.||++++. +.++.||+ .+++|..+++||. +|..+. +++++++||++||... .+++++||
T Consensus 16 ~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~----~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd 91 (346)
T TIGR03547 16 IGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAV----AAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYD 91 (346)
T ss_pred ECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccce----EEEECCEEEEEeCCCCCCCCCcceecccEEEEE
Confidence 37889998874 67899995 5789999999984 565443 5889999999999742 35799999
Q ss_pred CCCCcEEeCC-CCCCCccceeEE-eeCCEEEEEeeecCCC---------------------------------CccceEE
Q 012755 225 LIANCWSKCP-QMNLPRCLFGSS-SLGEVAIVAGGTDKNG---------------------------------CILKSAE 269 (457)
Q Consensus 225 ~~t~~W~~l~-~lp~~r~~~~~~-~~~~~iyv~GG~~~~~---------------------------------~~~~~v~ 269 (457)
|.+++|+.++ ++|.+|..++++ +++++||++||.+... ...++++
T Consensus 92 ~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (346)
T TIGR03547 92 PKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVL 171 (346)
T ss_pred CCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEE
Confidence 9999999997 456667777665 6899999999986320 0137899
Q ss_pred EEeCCCCcEEECCCCCC-CCcceeEEEECCEEEEEeccCCCCCCCceEEEEE--CCCCceEEcCCCCCCCCCCCCCCCCC
Q 012755 270 LYNSELGTWETLPDMNL-PRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYN--LETRTWKRIENMYPSNVGTQSNPAMS 346 (457)
Q Consensus 270 ~yd~~t~~W~~~~~~p~-~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd--~~t~~W~~~~~~~~~~~~~~~~~~~r 346 (457)
+||+.+++|+.+++||. +|..+++++++++|||+||..........++.|| +.+++|+++++|+.++. ..+..+
T Consensus 172 ~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~---~~~~~~ 248 (346)
T TIGR03547 172 SYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKS---SSQEGL 248 (346)
T ss_pred EEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCC---Cccccc
Confidence 99999999999999986 6888889999999999999864332234455565 57789999999876210 001122
Q ss_pred CCCEEEEECCEEEEEecCC----------------------CeEEEEECCCCcEEEeccCCCccCCCCcceEEEEEeCCE
Q 012755 347 SPPLVAVVNNQLYSADQAT----------------------NVVKKYNKTNNSWTVVKRLPVRANSFNGWGLAFKACGNS 404 (457)
Q Consensus 347 ~~~~~~~~~g~ly~~gg~~----------------------~~v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~g~ 404 (457)
..+.+++++|+||++||.. ..+++||+++++|+.+..||.++. ..++++++++
T Consensus 249 ~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~-----~~~~~~~~~~ 323 (346)
T TIGR03547 249 AGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLA-----YGVSVSWNNG 323 (346)
T ss_pred cEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCce-----eeEEEEcCCE
Confidence 3455778999999999852 257899999999999999988753 2346688999
Q ss_pred EEEEcCcCCCCCceEEEEEe
Q 012755 405 LLVIGGHRELQGEIIVLHSW 424 (457)
Q Consensus 405 lyv~GG~~~~~~~~~~v~~y 424 (457)
|||+||.........+++.+
T Consensus 324 iyv~GG~~~~~~~~~~v~~~ 343 (346)
T TIGR03547 324 VLLIGGENSGGKAVTDVYLL 343 (346)
T ss_pred EEEEeccCCCCCEeeeEEEE
Confidence 99999997665556666543
No 10
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=6e-34 Score=292.08 Aligned_cols=207 Identities=21% Similarity=0.303 Sum_probs=180.8
Q ss_pred EEeCCEEEEEceecC---CcEEEEEECCCCcEEeCCCCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcE
Q 012755 202 LAVGTQLLVFGRELS---GFAIWMYSLIANCWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTW 278 (457)
Q Consensus 202 ~~~~~~lyv~GG~~~---~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W 278 (457)
+..++.||++||... .+.++.|||.+++|..+++|+.+|..+++++++++||++||.++ ..++++||+.+++|
T Consensus 268 ~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~----~~sve~ydp~~n~W 343 (480)
T PHA02790 268 THVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN----PTSVERWFHGDAAW 343 (480)
T ss_pred EEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCC----CCceEEEECCCCeE
Confidence 458999999999642 36799999999999999999999999999999999999999753 25799999999999
Q ss_pred EECCCCCCCCcceeEEEECCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEE
Q 012755 279 ETLPDMNLPRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQL 358 (457)
Q Consensus 279 ~~~~~~p~~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~l 358 (457)
+.+++||.+|..+++++++|+||++||.+.. .+.+++|||.+++|+.+++|+. +|..+++++++|+|
T Consensus 344 ~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~m~~----------~r~~~~~~~~~~~I 410 (480)
T PHA02790 344 VNMPSLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPSTYY----------PHYKSCALVFGRRL 410 (480)
T ss_pred EECCCCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCCCCC----------ccccceEEEECCEE
Confidence 9999999999999999999999999997542 3678999999999999999887 78888999999999
Q ss_pred EEEecCCCeEEEEECCCCcEEEeccCCCccCCCCcceEEEEEeCCEEEEEcCcCCCCCceEEEEEeeCCCCCCCCCCeeE
Q 012755 359 YSADQATNVVKKYNKTNNSWTVVKRLPVRANSFNGWGLAFKACGNSLLVIGGHRELQGEIIVLHSWDPTDGNSGEAQWNE 438 (457)
Q Consensus 359 y~~gg~~~~v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~~~~~~v~~y~~~~~~w~~~~W~~ 438 (457)
|++|| .+++|||++++|+.+++||.++. ++++++++|+|||+||.++.. ....+++|||+++ +|+.
T Consensus 411 Yv~GG---~~e~ydp~~~~W~~~~~m~~~r~-----~~~~~v~~~~IYviGG~~~~~-~~~~ve~Yd~~~~-----~W~~ 476 (480)
T PHA02790 411 FLVGR---NAEFYCESSNTWTLIDDPIYPRD-----NPELIIVDNKLLLIGGFYRGS-YIDTIEVYNNRTY-----SWNI 476 (480)
T ss_pred EEECC---ceEEecCCCCcEeEcCCCCCCcc-----ccEEEEECCEEEEECCcCCCc-ccceEEEEECCCC-----eEEe
Confidence 99997 47899999999999999987664 234668999999999987432 3568999999998 7765
Q ss_pred e
Q 012755 439 L 439 (457)
Q Consensus 439 l 439 (457)
.
T Consensus 477 ~ 477 (480)
T PHA02790 477 W 477 (480)
T ss_pred c
Confidence 3
No 11
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=1.2e-33 Score=276.71 Aligned_cols=241 Identities=17% Similarity=0.250 Sum_probs=190.1
Q ss_pred cccEEEEEecC----------------ccEEEEe-CCCC-cEEeCCCCCCCccccCCCeeeEEeCCEEEEEceecC---C
Q 012755 159 VEHWVYLACIL----------------MPWEAFD-PLRQ-RWMRLPRMQCDECFTSADKESLAVGTQLLVFGRELS---G 217 (457)
Q Consensus 159 ~~~~l~~~~~~----------------~~~~~yd-p~~~-~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~---~ 217 (457)
.++.||++||. ++++.|+ +..+ +|..+++||.++..++ .+++++.||++||... .
T Consensus 12 ~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~----~~~~~~~lyviGG~~~~~~~ 87 (323)
T TIGR03548 12 IGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGA----SVSVENGIYYIGGSNSSERF 87 (323)
T ss_pred ECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceE----EEEECCEEEEEcCCCCCCCc
Confidence 47788888772 2466664 4333 7999999999887654 4778999999999643 3
Q ss_pred cEEEEEECCCCcE----EeCCCCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCC-CCccee
Q 012755 218 FAIWMYSLIANCW----SKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNL-PRKLCS 292 (457)
Q Consensus 218 ~~v~~yd~~t~~W----~~l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~-~r~~~~ 292 (457)
+++++||+.+++| +.+++||.+|..|++++++++|||+||.... ...+++++||+.+++|+.++++|. +|..++
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~ 166 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNG-KPSNKSYLFNLETQEWFELPDFPGEPRVQPV 166 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCC-ccCceEEEEcCCCCCeeECCCCCCCCCCcce
Confidence 6899999999998 7889999999999999999999999997543 457899999999999999999874 788888
Q ss_pred EEEECCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCE-EEEECCEEEEEecCC------
Q 012755 293 GFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPL-VAVVNNQLYSADQAT------ 365 (457)
Q Consensus 293 ~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~g~ly~~gg~~------ 365 (457)
+++++++|||+||.+.. ...++++||+++++|+.+++++..+ .|..+..+. +++.+++||++||..
T Consensus 167 ~~~~~~~iYv~GG~~~~--~~~~~~~yd~~~~~W~~~~~~~~~~-----~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~ 239 (323)
T TIGR03548 167 CVKLQNELYVFGGGSNI--AYTDGYKYSPKKNQWQKVADPTTDS-----EPISLLGAASIKINESLLLCIGGFNKDVYND 239 (323)
T ss_pred EEEECCEEEEEcCCCCc--cccceEEEecCCCeeEECCCCCCCC-----CceeccceeEEEECCCEEEEECCcCHHHHHH
Confidence 88999999999998643 2456799999999999998764310 111333333 444579999999853
Q ss_pred -------------------------------CeEEEEECCCCcEEEeccCCCccCCCCcceEEEEEeCCEEEEEcCcCCC
Q 012755 366 -------------------------------NVVKKYNKTNNSWTVVKRLPVRANSFNGWGLAFKACGNSLLVIGGHREL 414 (457)
Q Consensus 366 -------------------------------~~v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~~ 414 (457)
+++++||+++++|+.++++|...+ .+++++.++++||++||...+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r----~~~~~~~~~~~iyv~GG~~~p 315 (323)
T TIGR03548 240 AVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFAR----CGAALLLTGNNIFSINGELKP 315 (323)
T ss_pred HHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccccccc----CchheEEECCEEEEEeccccC
Confidence 579999999999999998874332 234577899999999998655
Q ss_pred C
Q 012755 415 Q 415 (457)
Q Consensus 415 ~ 415 (457)
.
T Consensus 316 g 316 (323)
T TIGR03548 316 G 316 (323)
T ss_pred C
Confidence 4
No 12
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=4.1e-33 Score=285.24 Aligned_cols=246 Identities=20% Similarity=0.347 Sum_probs=197.1
Q ss_pred EEEeCCC----CcEEeCCC---CCCCccccCCCeeeEEeCCEEEEEceecC-----CcEEEEEECCCCcEEeCCCC---C
Q 012755 173 EAFDPLR----QRWMRLPR---MQCDECFTSADKESLAVGTQLLVFGRELS-----GFAIWMYSLIANCWSKCPQM---N 237 (457)
Q Consensus 173 ~~ydp~~----~~W~~l~~---~p~~~~~~~~~~~~~~~~~~lyv~GG~~~-----~~~v~~yd~~t~~W~~l~~l---p 237 (457)
+.+||.+ ++|.++.+ +|.+|..|. ++++++.||++||... .+++++||+.+++|+.++++ |
T Consensus 140 y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~----~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P 215 (470)
T PLN02193 140 YISLPSTPKLLGKWIKVEQKGEGPGLRCSHG----IAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVP 215 (470)
T ss_pred EEecCCChhhhceEEEcccCCCCCCCccccE----EEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCC
Confidence 4447655 79999886 466776654 4788999999999642 25799999999999988653 3
Q ss_pred C-CccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCC---CCCCcceeEEEECCEEEEEeccCCCCCCC
Q 012755 238 L-PRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDM---NLPRKLCSGFFMDGKFYIIGGMSSPTDPL 313 (457)
Q Consensus 238 ~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~---p~~r~~~~~~~~~g~iyv~GG~~~~~~~~ 313 (457)
. +|..|++++++++|||+||.+.. ..++++++||+.+++|+.++++ |.+|..|++++++++|||+||.+... ..
T Consensus 216 ~~~~~~~~~v~~~~~lYvfGG~~~~-~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~-~~ 293 (470)
T PLN02193 216 HLSCLGVRMVSIGSTLYVFGGRDAS-RQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATA-RL 293 (470)
T ss_pred CCcccceEEEEECCEEEEECCCCCC-CCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCC-Cc
Confidence 3 35678889999999999998754 4578999999999999999887 78999999999999999999987543 46
Q ss_pred ceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecC----CCeEEEEECCCCcEEEeccC---CC
Q 012755 314 TCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQA----TNVVKKYNKTNNSWTVVKRL---PV 386 (457)
Q Consensus 314 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~----~~~v~~Yd~~~~~W~~v~~~---p~ 386 (457)
+++++||+.+++|+.++.... .+.+|..+++++++++||++||. .+++++||+++++|++++.+ |.
T Consensus 294 ~~~~~yd~~t~~W~~~~~~~~-------~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~ 366 (470)
T PLN02193 294 KTLDSYNIVDKKWFHCSTPGD-------SFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPS 366 (470)
T ss_pred ceEEEEECCCCEEEeCCCCCC-------CCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCC
Confidence 789999999999999875322 13378889999999999999984 37899999999999999765 43
Q ss_pred ccCCCCcceEEEEEeCCEEEEEcCcCCC--------CCceEEEEEeeCCCCCCCCCCeeEecc
Q 012755 387 RANSFNGWGLAFKACGNSLLVIGGHREL--------QGEIIVLHSWDPTDGNSGEAQWNELAV 441 (457)
Q Consensus 387 ~~~~~~~~~~~~~~~~g~lyv~GG~~~~--------~~~~~~v~~y~~~~~~w~~~~W~~l~~ 441 (457)
++. ++++++++++|||+||.... .....++++||++++ +|+.++.
T Consensus 367 ~R~-----~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~-----~W~~~~~ 419 (470)
T PLN02193 367 ERS-----VFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETL-----QWERLDK 419 (470)
T ss_pred Ccc-----eeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcC-----EEEEccc
Confidence 332 34566889999999997531 123458999999997 8998863
No 13
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=2.9e-33 Score=279.20 Aligned_cols=259 Identities=17% Similarity=0.223 Sum_probs=197.0
Q ss_pred ccEEEEEecC--ccEEEEeCC--CCcEEeCCCCCC-CccccCCCeeeEEeCCEEEEEceecC---------CcEEEEEEC
Q 012755 160 EHWVYLACIL--MPWEAFDPL--RQRWMRLPRMQC-DECFTSADKESLAVGTQLLVFGRELS---------GFAIWMYSL 225 (457)
Q Consensus 160 ~~~l~~~~~~--~~~~~ydp~--~~~W~~l~~~p~-~~~~~~~~~~~~~~~~~lyv~GG~~~---------~~~v~~yd~ 225 (457)
++.||++++. +.++.||+. +++|..++++|. +|..+ .++++++.||++||... .+++++||+
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~----~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~ 113 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQA----VAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDP 113 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccc----eEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeC
Confidence 7788988764 668899986 478999999875 45433 35888999999999753 257999999
Q ss_pred CCCcEEeCCC-CCCCccceeEEe-eCCEEEEEeeecCCC---------------------------------CccceEEE
Q 012755 226 IANCWSKCPQ-MNLPRCLFGSSS-LGEVAIVAGGTDKNG---------------------------------CILKSAEL 270 (457)
Q Consensus 226 ~t~~W~~l~~-lp~~r~~~~~~~-~~~~iyv~GG~~~~~---------------------------------~~~~~v~~ 270 (457)
.+++|+.+++ +|.++..|++++ .+++||++||.+... ...+++++
T Consensus 114 ~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~ 193 (376)
T PRK14131 114 KTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLS 193 (376)
T ss_pred CCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEE
Confidence 9999999985 466677777766 799999999975310 02468999
Q ss_pred EeCCCCcEEECCCCCC-CCcceeEEEECCEEEEEeccCCCCCCCceE--EEEECCCCceEEcCCCCCCCCCCCCCCCCCC
Q 012755 271 YNSELGTWETLPDMNL-PRKLCSGFFMDGKFYIIGGMSSPTDPLTCG--EEYNLETRTWKRIENMYPSNVGTQSNPAMSS 347 (457)
Q Consensus 271 yd~~t~~W~~~~~~p~-~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~--~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~ 347 (457)
||+.+++|+.++++|. +|..++++.++++|||+||..........+ ..||+++++|+.+++|+.++.+. .+..+.
T Consensus 194 YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~--~~~~~~ 271 (376)
T PRK14131 194 YDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGS--SQEGVA 271 (376)
T ss_pred EECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCC--cCCccc
Confidence 9999999999999986 677888889999999999975433223333 35688999999999987621100 000112
Q ss_pred CCEEEEECCEEEEEecCC----------------------CeEEEEECCCCcEEEeccCCCccCCCCcceEEEEEeCCEE
Q 012755 348 PPLVAVVNNQLYSADQAT----------------------NVVKKYNKTNNSWTVVKRLPVRANSFNGWGLAFKACGNSL 405 (457)
Q Consensus 348 ~~~~~~~~g~ly~~gg~~----------------------~~v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~g~l 405 (457)
.+.+++++++||++||.. ..+++||+++++|+.++.||.++.. .++++++++|
T Consensus 272 ~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~-----~~av~~~~~i 346 (376)
T PRK14131 272 GAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAY-----GVSVSWNNGV 346 (376)
T ss_pred eEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccc-----eEEEEeCCEE
Confidence 233567899999999842 1467899999999999999987632 3467899999
Q ss_pred EEEcCcCCCCCceEEEEEeeCCCC
Q 012755 406 LVIGGHRELQGEIIVLHSWDPTDG 429 (457)
Q Consensus 406 yv~GG~~~~~~~~~~v~~y~~~~~ 429 (457)
||+||.........+++.|+++++
T Consensus 347 yv~GG~~~~~~~~~~v~~~~~~~~ 370 (376)
T PRK14131 347 LLIGGETAGGKAVSDVTLLSWDGK 370 (376)
T ss_pred EEEcCCCCCCcEeeeEEEEEEcCC
Confidence 999998655556789999999875
No 14
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=4.2e-33 Score=275.71 Aligned_cols=244 Identities=18% Similarity=0.240 Sum_probs=188.1
Q ss_pred CCCCCCCccccCCCeeeEEeCCEEEEEceecCCcEEEEEEC--CCCcEEeCCCCC-CCccceeEEeeCCEEEEEeeecCC
Q 012755 185 LPRMQCDECFTSADKESLAVGTQLLVFGRELSGFAIWMYSL--IANCWSKCPQMN-LPRCLFGSSSLGEVAIVAGGTDKN 261 (457)
Q Consensus 185 l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~--~t~~W~~l~~lp-~~r~~~~~~~~~~~iyv~GG~~~~ 261 (457)
+|+||.++.... .+++++.|||+||.. .+.+++||+ .+++|+++++|| .+|..+++++++++|||+||....
T Consensus 1 ~~~lp~~~~~~~----~~~~~~~vyv~GG~~-~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~ 75 (346)
T TIGR03547 1 LPDLPVGFKNGT----GAIIGDKVYVGLGSA-GTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKA 75 (346)
T ss_pred CCCCCccccCce----EEEECCEEEEEcccc-CCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCC
Confidence 467777766533 468899999999974 467999996 678999999999 589999999999999999998532
Q ss_pred C-----CccceEEEEeCCCCcEEECC-CCCCCCcceeEE-EECCEEEEEeccCCCC------------------------
Q 012755 262 G-----CILKSAELYNSELGTWETLP-DMNLPRKLCSGF-FMDGKFYIIGGMSSPT------------------------ 310 (457)
Q Consensus 262 ~-----~~~~~v~~yd~~t~~W~~~~-~~p~~r~~~~~~-~~~g~iyv~GG~~~~~------------------------ 310 (457)
. ..++++++||+.+++|+.++ ++|.+|..++++ +++++||++||.+...
T Consensus 76 ~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (346)
T TIGR03547 76 NSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAA 155 (346)
T ss_pred CCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHH
Confidence 1 24688999999999999997 456667677666 7899999999975320
Q ss_pred ---------CCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecCC------CeEEEEE--C
Q 012755 311 ---------DPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQAT------NVVKKYN--K 373 (457)
Q Consensus 311 ---------~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~~------~~v~~Yd--~ 373 (457)
...+.+++||+.+++|+.+++|+. .+|..+++++++++||++||.. .+++.|| +
T Consensus 156 ~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~---------~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~ 226 (346)
T TIGR03547 156 YFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPF---------LGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTG 226 (346)
T ss_pred HhCCChhHcCccceEEEEECCCCceeECccCCC---------CcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecC
Confidence 013689999999999999998864 1577888899999999999852 3466665 5
Q ss_pred CCCcEEEeccCCCccCC-C-CcceEEEEEeCCEEEEEcCcCCCC----------------CceEEEEEeeCCCCCCCCCC
Q 012755 374 TNNSWTVVKRLPVRANS-F-NGWGLAFKACGNSLLVIGGHRELQ----------------GEIIVLHSWDPTDGNSGEAQ 435 (457)
Q Consensus 374 ~~~~W~~v~~~p~~~~~-~-~~~~~~~~~~~g~lyv~GG~~~~~----------------~~~~~v~~y~~~~~~w~~~~ 435 (457)
++++|+.++.||.++.. + ...++.+++++++|||+||..... .....+++||++++ +
T Consensus 227 ~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~-----~ 301 (346)
T TIGR03547 227 GKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNG-----K 301 (346)
T ss_pred CCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCC-----c
Confidence 67799999999876531 1 112344667899999999975221 01246899999987 8
Q ss_pred eeEeccccccCc
Q 012755 436 WNELAVRERAGA 447 (457)
Q Consensus 436 W~~l~~~~~~~~ 447 (457)
|+.++.+|....
T Consensus 302 W~~~~~lp~~~~ 313 (346)
T TIGR03547 302 WSKVGKLPQGLA 313 (346)
T ss_pred ccccCCCCCCce
Confidence 999988775443
No 15
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=7.9e-33 Score=283.82 Aligned_cols=198 Identities=20% Similarity=0.365 Sum_probs=177.9
Q ss_pred cccEEEEEecC------ccEEEEeCCCCcEEeCCCCCCCccccCCCeeeEEeCCEEEEEceecCCcEEEEEECCCCcEEe
Q 012755 159 VEHWVYLACIL------MPWEAFDPLRQRWMRLPRMQCDECFTSADKESLAVGTQLLVFGRELSGFAIWMYSLIANCWSK 232 (457)
Q Consensus 159 ~~~~l~~~~~~------~~~~~ydp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~ 232 (457)
.++.+|++||. +.++.|||.+++|..+++||.+|..+. +++.++.||++||....+.+++|||.+++|..
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~----~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~ 345 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYAS----GVPANNKLYVVGGLPNPTSVERWFHGDAAWVN 345 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcce----EEEECCEEEEECCcCCCCceEEEECCCCeEEE
Confidence 46789999873 568999999999999999998887654 47899999999998666789999999999999
Q ss_pred CCCCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCcceeEEEECCEEEEEeccCCCCCC
Q 012755 233 CPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFMDGKFYIIGGMSSPTDP 312 (457)
Q Consensus 233 l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~iyv~GG~~~~~~~ 312 (457)
+++||.+|..+++++++++||++||.++. ...+++|||.+++|+.+++|+.+|..+++++++|+|||+||.
T Consensus 346 ~~~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~------ 416 (480)
T PHA02790 346 MPSLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN------ 416 (480)
T ss_pred CCCCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCc------
Confidence 99999999999999999999999998643 367999999999999999999999999999999999999973
Q ss_pred CceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecC-----CCeEEEEECCCCcEEEec
Q 012755 313 LTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQA-----TNVVKKYNKTNNSWTVVK 382 (457)
Q Consensus 313 ~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~-----~~~v~~Yd~~~~~W~~v~ 382 (457)
+++|||++++|+.+++|+. +|..+++++++|+||++||. .+.+++|||++++|+...
T Consensus 417 ---~e~ydp~~~~W~~~~~m~~----------~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 417 ---AEFYCESSNTWTLIDDPIY----------PRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred ---eEEecCCCCcEeEcCCCCC----------CccccEEEEECCEEEEECCcCCCcccceEEEEECCCCeEEecC
Confidence 5789999999999999887 88999999999999999984 367999999999998753
No 16
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=6.6e-32 Score=264.50 Aligned_cols=228 Identities=19% Similarity=0.242 Sum_probs=180.8
Q ss_pred eeEEeCCEEEEEceecCC-------------cEEEEEE-CCC-CcEEeCCCCCCCccceeEEeeCCEEEEEeeecCCCCc
Q 012755 200 ESLAVGTQLLVFGRELSG-------------FAIWMYS-LIA-NCWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCI 264 (457)
Q Consensus 200 ~~~~~~~~lyv~GG~~~~-------------~~v~~yd-~~t-~~W~~l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~ 264 (457)
..+++++.||++||.... +++++|+ +.. .+|..+++||.+|..+++++++++||++||.++. ..
T Consensus 8 ~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~-~~ 86 (323)
T TIGR03548 8 YAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNSS-ER 86 (323)
T ss_pred eeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCCC-CC
Confidence 357789999999997543 3677775 332 3799999999999988888999999999998754 45
Q ss_pred cceEEEEeCCCCcE----EECCCCCCCCcceeEEEECCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCC
Q 012755 265 LKSAELYNSELGTW----ETLPDMNLPRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQ 340 (457)
Q Consensus 265 ~~~v~~yd~~t~~W----~~~~~~p~~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~ 340 (457)
++++++||+.+++| +.+++||.+|..+++++++++|||+||..... ..+++++||+.+++|+++++++.
T Consensus 87 ~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~~p~------ 159 (323)
T TIGR03548 87 FSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGK-PSNKSYLFNLETQEWFELPDFPG------ 159 (323)
T ss_pred ceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCc-cCceEEEEcCCCCCeeECCCCCC------
Confidence 78999999999998 78899999999999999999999999975433 46889999999999999988763
Q ss_pred CCCCCCCCCEEEEECCEEEEEecCC----CeEEEEECCCCcEEEeccCCCccCCCCc-ceEEEEEeCCEEEEEcCcCCCC
Q 012755 341 SNPAMSSPPLVAVVNNQLYSADQAT----NVVKKYNKTNNSWTVVKRLPVRANSFNG-WGLAFKACGNSLLVIGGHRELQ 415 (457)
Q Consensus 341 ~~~~~r~~~~~~~~~g~ly~~gg~~----~~v~~Yd~~~~~W~~v~~~p~~~~~~~~-~~~~~~~~~g~lyv~GG~~~~~ 415 (457)
..|..+.+++++++||++||.. .++++||+++++|+.++.|+..+..+.. ..++++..+++|||+||.+...
T Consensus 160 ---~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~ 236 (323)
T TIGR03548 160 ---EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDV 236 (323)
T ss_pred ---CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHH
Confidence 1577888889999999999853 4689999999999999877532111111 1233445689999999986321
Q ss_pred -------------------------------CceEEEEEeeCCCCCCCCCCeeEecccc
Q 012755 416 -------------------------------GEIIVLHSWDPTDGNSGEAQWNELAVRE 443 (457)
Q Consensus 416 -------------------------------~~~~~v~~y~~~~~~w~~~~W~~l~~~~ 443 (457)
....++++||++++ +|+.++.+|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~-----~W~~~~~~p 290 (323)
T TIGR03548 237 YNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTG-----KWKSIGNSP 290 (323)
T ss_pred HHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCC-----eeeEccccc
Confidence 11357999999998 899988654
No 17
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=5.9e-32 Score=282.74 Aligned_cols=216 Identities=19% Similarity=0.367 Sum_probs=189.2
Q ss_pred cccEEEEEecC-------ccEEEEeCCCCcEEeCCCCCCCccccCCCeeeEEeCCEEEEEceecC---CcEEEEEECCCC
Q 012755 159 VEHWVYLACIL-------MPWEAFDPLRQRWMRLPRMQCDECFTSADKESLAVGTQLLVFGRELS---GFAIWMYSLIAN 228 (457)
Q Consensus 159 ~~~~l~~~~~~-------~~~~~ydp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~---~~~v~~yd~~t~ 228 (457)
.++.+|++||. ++++.||+.+++|..++++|.+|..+. +++.++.||++||... .+++++||+.++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~----~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~ 368 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPG----VTVFNNRIYVIGGIYNSISLNTVESWKPGES 368 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccce----EEEECCEEEEEeCCCCCEecceEEEEcCCCC
Confidence 37889999872 478999999999999999998887654 4788999999999752 367999999999
Q ss_pred cEEeCCCCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCcceeEEEECCEEEEEeccCC
Q 012755 229 CWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFMDGKFYIIGGMSS 308 (457)
Q Consensus 229 ~W~~l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~iyv~GG~~~ 308 (457)
+|+.+++||.+|..+++++++++||++||....+..++++++||+.+++|+.++++|.+|..+++++.+++||++||...
T Consensus 369 ~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 448 (534)
T PHA03098 369 KWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISY 448 (534)
T ss_pred ceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccC
Confidence 99999999999999999999999999999765545578999999999999999999999999999999999999999764
Q ss_pred CCC--CCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecC-----CCeEEEEECCCCcEEEe
Q 012755 309 PTD--PLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQA-----TNVVKKYNKTNNSWTVV 381 (457)
Q Consensus 309 ~~~--~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~-----~~~v~~Yd~~~~~W~~v 381 (457)
... ..+.+++||+.+++|+.+++++. +|..+++++++++||++||. .+.+++||+++++|+.+
T Consensus 449 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~----------~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 518 (534)
T PHA03098 449 IDNIKVYNIVESYNPVTNKWTELSSLNF----------PRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLF 518 (534)
T ss_pred CCCCcccceEEEecCCCCceeeCCCCCc----------ccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEec
Confidence 332 25669999999999999998876 78888899999999999985 46899999999999999
Q ss_pred ccCCCcc
Q 012755 382 KRLPVRA 388 (457)
Q Consensus 382 ~~~p~~~ 388 (457)
+.+|...
T Consensus 519 ~~~p~~~ 525 (534)
T PHA03098 519 CKFPKVI 525 (534)
T ss_pred CCCcccc
Confidence 8877543
No 18
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=3.4e-31 Score=264.37 Aligned_cols=250 Identities=19% Similarity=0.217 Sum_probs=190.4
Q ss_pred cEEeCCCCCCCccccCCCeeeEEeCCEEEEEceecCCcEEEEEECC--CCcEEeCCCCC-CCccceeEEeeCCEEEEEee
Q 012755 181 RWMRLPRMQCDECFTSADKESLAVGTQLLVFGRELSGFAIWMYSLI--ANCWSKCPQMN-LPRCLFGSSSLGEVAIVAGG 257 (457)
Q Consensus 181 ~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~--t~~W~~l~~lp-~~r~~~~~~~~~~~iyv~GG 257 (457)
.+..+++||.++.... .+++++.|||+||.. .+.+++||+. +++|..++++| .+|..+++++++++|||+||
T Consensus 18 ~~~~l~~lP~~~~~~~----~~~~~~~iyv~gG~~-~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG 92 (376)
T PRK14131 18 NAEQLPDLPVPFKNGT----GAIDNNTVYVGLGSA-GTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGG 92 (376)
T ss_pred ecccCCCCCcCccCCe----EEEECCEEEEEeCCC-CCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcC
Confidence 4678889998876653 477899999999964 3568999986 57999999998 58999999999999999999
Q ss_pred ecC-C----CCccceEEEEeCCCCcEEECCC-CCCCCcceeEEE-ECCEEEEEeccCCCC--------------------
Q 012755 258 TDK-N----GCILKSAELYNSELGTWETLPD-MNLPRKLCSGFF-MDGKFYIIGGMSSPT-------------------- 310 (457)
Q Consensus 258 ~~~-~----~~~~~~v~~yd~~t~~W~~~~~-~p~~r~~~~~~~-~~g~iyv~GG~~~~~-------------------- 310 (457)
.+. . ...+.++++||+.+++|+.+++ +|.++..|++++ .+++||++||.....
T Consensus 93 ~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~ 172 (376)
T PRK14131 93 IGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDK 172 (376)
T ss_pred CCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhh
Confidence 864 1 1246789999999999999985 466666777666 899999999975310
Q ss_pred -------------CCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecC------CCeEE--
Q 012755 311 -------------DPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQA------TNVVK-- 369 (457)
Q Consensus 311 -------------~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~------~~~v~-- 369 (457)
...+.+++||+.+++|+.+++++. ..+..+++++++++||++||. ..+++
T Consensus 173 i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~---------~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~ 243 (376)
T PRK14131 173 INDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPF---------LGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQG 243 (376)
T ss_pred hHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCC---------CCCCcceEEEECCEEEEEeeeECCCcCChhheEE
Confidence 024689999999999999988764 156777888899999999984 22333
Q ss_pred EEECCCCcEEEeccCCCccCCC---CcceEEEEEeCCEEEEEcCcCCCCC----------------ceEEEEEeeCCCCC
Q 012755 370 KYNKTNNSWTVVKRLPVRANSF---NGWGLAFKACGNSLLVIGGHRELQG----------------EIIVLHSWDPTDGN 430 (457)
Q Consensus 370 ~Yd~~~~~W~~v~~~p~~~~~~---~~~~~~~~~~~g~lyv~GG~~~~~~----------------~~~~v~~y~~~~~~ 430 (457)
.||+++++|+.++.||.++... ...++.+++++++|||+||...... ....+++||++++
T Consensus 244 ~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~- 322 (376)
T PRK14131 244 KFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNG- 322 (376)
T ss_pred EecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCC-
Confidence 5678899999999998765311 1122334578999999999753211 1125789999997
Q ss_pred CCCCCeeEeccccccCceE
Q 012755 431 SGEAQWNELAVRERAGAFV 449 (457)
Q Consensus 431 w~~~~W~~l~~~~~~~~~~ 449 (457)
+|+.++.+|......
T Consensus 323 ----~W~~~~~lp~~r~~~ 337 (376)
T PRK14131 323 ----KWQKVGELPQGLAYG 337 (376)
T ss_pred ----cccccCcCCCCccce
Confidence 799888877555444
No 19
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.97 E-value=5.3e-30 Score=227.96 Aligned_cols=239 Identities=18% Similarity=0.289 Sum_probs=193.5
Q ss_pred eEEeCCEEEEEceecCC--------cEEEEEECCCCcEEeCCC-------------CCCCccceeEEeeCCEEEEEeeec
Q 012755 201 SLAVGTQLLVFGRELSG--------FAIWMYSLIANCWSKCPQ-------------MNLPRCLFGSSSLGEVAIVAGGTD 259 (457)
Q Consensus 201 ~~~~~~~lyv~GG~~~~--------~~v~~yd~~t~~W~~l~~-------------lp~~r~~~~~~~~~~~iyv~GG~~ 259 (457)
.+++|..||-|||+... -+|.++|..+-+|+++|+ .|..|++|+++.+.+++|+.||.+
T Consensus 19 avaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRN 98 (392)
T KOG4693|consen 19 AVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRN 98 (392)
T ss_pred eeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCcc
Confidence 48999999999997433 479999999999999876 245689999999999999999999
Q ss_pred CCCCccceEEEEeCCCCcEEEC---CCCCCCCcceeEEEECCEEEEEeccCCCC-CCCceEEEEECCCCceEEcCCCCCC
Q 012755 260 KNGCILKSAELYNSELGTWETL---PDMNLPRKLCSGFFMDGKFYIIGGMSSPT-DPLTCGEEYNLETRTWKRIENMYPS 335 (457)
Q Consensus 260 ~~~~~~~~v~~yd~~t~~W~~~---~~~p~~r~~~~~~~~~g~iyv~GG~~~~~-~~~~~~~~yd~~t~~W~~~~~~~~~ 335 (457)
++...-+.++.||++|+.|.+. .-+|.+|.+|+++++++.+|++||+.... ..+++++++|..|.+|+.+.....
T Consensus 99 D~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~- 177 (392)
T KOG4693|consen 99 DDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGD- 177 (392)
T ss_pred CcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCC-
Confidence 8666678899999999999886 35788999999999999999999986543 357789999999999999976544
Q ss_pred CCCCCCCCCCCCCCEEEEECCEEEEEecC--------------CCeEEEEECCCCcEEEecc---CCCccCCCCcceEEE
Q 012755 336 NVGTQSNPAMSSPPLVAVVNNQLYSADQA--------------TNVVKKYNKTNNSWTVVKR---LPVRANSFNGWGLAF 398 (457)
Q Consensus 336 ~~~~~~~~~~r~~~~~~~~~g~ly~~gg~--------------~~~v~~Yd~~~~~W~~v~~---~p~~~~~~~~~~~~~ 398 (457)
+|.-|..|+++++++++|++||. .+.+..+|..++.|...+. .|..++++ ..
T Consensus 178 ------PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSH-----S~ 246 (392)
T KOG4693|consen 178 ------PPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSH-----ST 246 (392)
T ss_pred ------CchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCccccc-----ce
Confidence 24478899999999999999973 3468899999999998764 34445443 35
Q ss_pred EEeCCEEEEEcCcCCCCC-ceEEEEEeeCCCCCCCCCCeeEeccccc--cCceEEeeeeec
Q 012755 399 KACGNSLLVIGGHRELQG-EIIVLHSWDPTDGNSGEAQWNELAVRER--AGAFVYNCAVMG 456 (457)
Q Consensus 399 ~~~~g~lyv~GG~~~~~~-~~~~v~~y~~~~~~w~~~~W~~l~~~~~--~~~~~~~~~~~~ 456 (457)
.+++++||+|||+++.-+ ...++|.|||.+- .|++|.++.. ..+=-.||.|||
T Consensus 247 fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~-----~W~~I~~~Gk~P~aRRRqC~~v~g 302 (392)
T KOG4693|consen 247 FVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTS-----MWSVISVRGKYPSARRRQCSVVSG 302 (392)
T ss_pred EEEcceEEEecccchhhhhhhcceeecccccc-----hheeeeccCCCCCcccceeEEEEC
Confidence 589999999999987543 3579999999986 7999987321 223344555654
No 20
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.97 E-value=5e-29 Score=221.77 Aligned_cols=242 Identities=16% Similarity=0.258 Sum_probs=191.8
Q ss_pred ccEEEEEec-----------CccEEEEeCCCCcEEeCCCC--------CCCcc-ccCCCeeeEEeCCEEEEEceecCC--
Q 012755 160 EHWVYLACI-----------LMPWEAFDPLRQRWMRLPRM--------QCDEC-FTSADKESLAVGTQLLVFGRELSG-- 217 (457)
Q Consensus 160 ~~~l~~~~~-----------~~~~~~ydp~~~~W~~l~~~--------p~~~~-~~~~~~~~~~~~~~lyv~GG~~~~-- 217 (457)
...+|-+++ .-+++++|..+-+|+++++- |.|.. +...++.++...+++|+.||.+.+
T Consensus 23 G~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~eg 102 (392)
T KOG4693|consen 23 GSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEG 102 (392)
T ss_pred cceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCccc
Confidence 677887765 35688999999999999861 11110 111234578899999999996543
Q ss_pred --cEEEEEECCCCcEEeC---CCCCCCccceeEEeeCCEEEEEeeecCC-CCccceEEEEeCCCCcEEECC---CCCCCC
Q 012755 218 --FAIWMYSLIANCWSKC---PQMNLPRCLFGSSSLGEVAIVAGGTDKN-GCILKSAELYNSELGTWETLP---DMNLPR 288 (457)
Q Consensus 218 --~~v~~yd~~t~~W~~l---~~lp~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~v~~yd~~t~~W~~~~---~~p~~r 288 (457)
+.++.|||.|+.|.+. ..+|.+|.+|+++++++.+|+|||+.++ ....++++++|..|.+|+.+. .+|.-|
T Consensus 103 aCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwR 182 (392)
T KOG4693|consen 103 ACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWR 182 (392)
T ss_pred ccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhh
Confidence 6799999999999875 3578999999999999999999999643 356789999999999999984 456667
Q ss_pred cceeEEEECCEEEEEeccCCCC--------CCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEE
Q 012755 289 KLCSGFFMDGKFYIIGGMSSPT--------DPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYS 360 (457)
Q Consensus 289 ~~~~~~~~~g~iyv~GG~~~~~--------~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~ 360 (457)
..|++.++++.+|++||..... .+.+.+..+|++|+.|.+.+.-+. .|..|..|++.++||+||+
T Consensus 183 DFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~-------~P~GRRSHS~fvYng~~Y~ 255 (392)
T KOG4693|consen 183 DFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTM-------KPGGRRSHSTFVYNGKMYM 255 (392)
T ss_pred hhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCc-------CCCcccccceEEEcceEEE
Confidence 8999999999999999986432 245678899999999998865443 4558889999999999999
Q ss_pred EecC-------CCeEEEEECCCCcEEEeccC---CCccCCCCcceEEEEEeCCEEEEEcCcCC
Q 012755 361 ADQA-------TNVVKKYNKTNNSWTVVKRL---PVRANSFNGWGLAFKACGNSLLVIGGHRE 413 (457)
Q Consensus 361 ~gg~-------~~~v~~Yd~~~~~W~~v~~~---p~~~~~~~~~~~~~~~~~g~lyv~GG~~~ 413 (457)
+||. .+++|+|||.+..|+.+..- |.+++ . ...++.++++|+|||...
T Consensus 256 FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRR---R--qC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 256 FGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARR---R--QCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred ecccchhhhhhhcceeecccccchheeeeccCCCCCccc---c--eeEEEECCEEEEecCCCC
Confidence 9985 57899999999999998643 44443 2 235578999999999864
No 21
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.93 E-value=2.1e-24 Score=220.54 Aligned_cols=237 Identities=24% Similarity=0.332 Sum_probs=193.5
Q ss_pred CCCCCccccCCCeeeEEeCCEEEEEceecCC-----cEEEEEECCCCcEEeCC---CCCCCccceeEEeeCCEEEEEeee
Q 012755 187 RMQCDECFTSADKESLAVGTQLLVFGRELSG-----FAIWMYSLIANCWSKCP---QMNLPRCLFGSSSLGEVAIVAGGT 258 (457)
Q Consensus 187 ~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~-----~~v~~yd~~t~~W~~l~---~lp~~r~~~~~~~~~~~iyv~GG~ 258 (457)
..|.+|..|.+ +.+++++|||||.... .+++++|..+..|.... ..|.+|.+|.+++++++||+|||.
T Consensus 56 ~~p~~R~~hs~----~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~ 131 (482)
T KOG0379|consen 56 VGPIPRAGHSA----VLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGT 131 (482)
T ss_pred CCcchhhccce----eEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccc
Confidence 35666766654 6679999999996433 25999999999998763 467899999999999999999999
Q ss_pred cCCCCccceEEEEeCCCCcEEECC---CCCCCCcceeEEEECCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCC
Q 012755 259 DKNGCILKSAELYNSELGTWETLP---DMNLPRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPS 335 (457)
Q Consensus 259 ~~~~~~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~ 335 (457)
+......++++.||+.|++|+.+. .+|.+|.+|++++++.+|||+||.+......+++++||+++.+|.++.....
T Consensus 132 ~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~- 210 (482)
T KOG0379|consen 132 DKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGE- 210 (482)
T ss_pred cCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCC-
Confidence 865566889999999999999874 4688999999999999999999998877689999999999999999986554
Q ss_pred CCCCCCCCCCCCCCEEEEECCEEEEEecC------CCeEEEEECCCCcEEEeccCCCccCCCCcceEEEEEeCCEEEEEc
Q 012755 336 NVGTQSNPAMSSPPLVAVVNNQLYSADQA------TNVVKKYNKTNNSWTVVKRLPVRANSFNGWGLAFKACGNSLLVIG 409 (457)
Q Consensus 336 ~~~~~~~~~~r~~~~~~~~~g~ly~~gg~------~~~v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~G 409 (457)
.|.+|.+|++++++++++++||. .++++.+|..+.+|..+......+..+ .++.++..+..++++|
T Consensus 211 ------~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R--~~h~~~~~~~~~~l~g 282 (482)
T KOG0379|consen 211 ------APSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPR--SGHSLTVSGDHLLLFG 282 (482)
T ss_pred ------CCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCc--ceeeeEEECCEEEEEc
Confidence 35599999999999999999874 578999999999999765433322222 2344568899999999
Q ss_pred CcCCCCC-ceEEEEEeeCCCCCCCCCCeeEecc
Q 012755 410 GHRELQG-EIIVLHSWDPTDGNSGEAQWNELAV 441 (457)
Q Consensus 410 G~~~~~~-~~~~v~~y~~~~~~w~~~~W~~l~~ 441 (457)
|...... ...+++.++.++. .|..+..
T Consensus 283 G~~~~~~~~l~~~~~l~~~~~-----~w~~~~~ 310 (482)
T KOG0379|consen 283 GGTDPKQEPLGDLYGLDLETL-----VWSKVES 310 (482)
T ss_pred CCccccccccccccccccccc-----ceeeeec
Confidence 9876533 5678999999876 6776654
No 22
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.93 E-value=2e-24 Score=203.16 Aligned_cols=256 Identities=16% Similarity=0.152 Sum_probs=191.7
Q ss_pred CCCCcHHHHhhhceeccccccCcc-cccChhhhhhhccCcchhhhhcccccccEEEEEec----------CccEEEEeCC
Q 012755 110 LPGLHDDATLDILAWSSRSDYPTL-SCLNRKFKSLIASGYLYKLRRQLGMVEHWVYLACI----------LMPWEAFDPL 178 (457)
Q Consensus 110 ~~~LPddl~~~iLarlp~~~~~~l-~~v~k~w~~li~s~~~~~~r~~~~~~~~~l~~~~~----------~~~~~~ydp~ 178 (457)
.+.|-++.|.+|+..+..+...+. ..+|. -.+|.....-..++..+ -|+++|| .++++.||..
T Consensus 33 ~~e~de~~i~~~iq~~eaK~~e~~~e~~~~-----~PspRsn~sl~~nPeke-ELilfGGEf~ngqkT~vYndLy~Yn~k 106 (521)
T KOG1230|consen 33 NEELDEADIAEIIQSLEAKQIEHVVETSVP-----PPSPRSNPSLFANPEKE-ELILFGGEFYNGQKTHVYNDLYSYNTK 106 (521)
T ss_pred CcccchHHHHHHHHhhhhhccceeeeccCC-----CCCCCCCcceeeccCcc-eeEEecceeecceeEEEeeeeeEEecc
Confidence 446667788888887777663211 11110 00111111111122223 5666665 5889999999
Q ss_pred CCcEEeCC--CCCCCccccCCCeeeEEeCCEEEEEceecCC---------cEEEEEECCCCcEEeC--CCCCCCccceeE
Q 012755 179 RQRWMRLP--RMQCDECFTSADKESLAVGTQLLVFGRELSG---------FAIWMYSLIANCWSKC--PQMNLPRCLFGS 245 (457)
Q Consensus 179 ~~~W~~l~--~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~---------~~v~~yd~~t~~W~~l--~~lp~~r~~~~~ 245 (457)
+++|.++. ..|.||+.|.+ +++..+.+|+|||+..+ .++|.||..|++|.++ +.-|.||++|.+
T Consensus 107 ~~eWkk~~spn~P~pRsshq~---va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRM 183 (521)
T KOG1230|consen 107 KNEWKKVVSPNAPPPRSSHQA---VAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRM 183 (521)
T ss_pred ccceeEeccCCCcCCCcccee---EEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCcccee
Confidence 99998874 46777877765 45556899999998554 5899999999999997 456899999999
Q ss_pred EeeCCEEEEEeeecCC---CCccceEEEEeCCCCcEEECCC---CCCCCcceeEEEE-CCEEEEEeccCCC--------C
Q 012755 246 SSLGEVAIVAGGTDKN---GCILKSAELYNSELGTWETLPD---MNLPRKLCSGFFM-DGKFYIIGGMSSP--------T 310 (457)
Q Consensus 246 ~~~~~~iyv~GG~~~~---~~~~~~v~~yd~~t~~W~~~~~---~p~~r~~~~~~~~-~g~iyv~GG~~~~--------~ 310 (457)
++...+|++|||+.+. ..+.+++++||+.|-+|+++.+ -|.+|+++...+. +|.|||.||+... +
T Consensus 184 vawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG 263 (521)
T KOG1230|consen 184 VAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKG 263 (521)
T ss_pred EEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcC
Confidence 9999999999998543 2578999999999999999844 4789999998888 9999999998532 2
Q ss_pred CCCceEEEEECCC-----CceEEcCCCCCCCCCCCCCCCCCCCCEEEEE-CCEEEEEec--------------CCCeEEE
Q 012755 311 DPLTCGEEYNLET-----RTWKRIENMYPSNVGTQSNPAMSSPPLVAVV-NNQLYSADQ--------------ATNVVKK 370 (457)
Q Consensus 311 ~~~~~~~~yd~~t-----~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~g~ly~~gg--------------~~~~v~~ 370 (457)
...++++..++++ -.|.++.+... .|.+|.+.++++. +++-+.||| +.++++.
T Consensus 264 ~~hsDmf~L~p~~~~~dKw~W~kvkp~g~-------kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~ 336 (521)
T KOG1230|consen 264 TRHSDMFLLKPEDGREDKWVWTKVKPSGV-------KPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYF 336 (521)
T ss_pred ceeeeeeeecCCcCCCcceeEeeccCCCC-------CCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhh
Confidence 3567889999988 57888876544 4669999988776 668999987 3678999
Q ss_pred EECCCCcEEEe
Q 012755 371 YNKTNNSWTVV 381 (457)
Q Consensus 371 Yd~~~~~W~~v 381 (457)
||...++|+..
T Consensus 337 fdlt~nrW~~~ 347 (521)
T KOG1230|consen 337 FDLTRNRWSEG 347 (521)
T ss_pred eecccchhhHh
Confidence 99999999864
No 23
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.92 E-value=3.6e-23 Score=211.53 Aligned_cols=228 Identities=20% Similarity=0.222 Sum_probs=187.5
Q ss_pred Ccchhhhhccccc--ccEEEEEec------Cc--cEEEEeCCCCcEEeCCC---CCCCccccCCCeeeEEeCCEEEEEce
Q 012755 147 GYLYKLRRQLGMV--EHWVYLACI------LM--PWEAFDPLRQRWMRLPR---MQCDECFTSADKESLAVGTQLLVFGR 213 (457)
Q Consensus 147 ~~~~~~r~~~~~~--~~~l~~~~~------~~--~~~~ydp~~~~W~~l~~---~p~~~~~~~~~~~~~~~~~~lyv~GG 213 (457)
...+..|..|... ...+|+++| .. +++++|..+..|..... .|.++..+ ..+++++.||+|||
T Consensus 55 ~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~----~~~~~~~~l~lfGG 130 (482)
T KOG0379|consen 55 GVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGH----SLSAVGDKLYLFGG 130 (482)
T ss_pred CCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccce----eEEEECCeEEEEcc
Confidence 3344455555443 788888876 23 59999999999977653 34444443 36889999999999
Q ss_pred ecC----CcEEEEEECCCCcEEeCC---CCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEEC---CC
Q 012755 214 ELS----GFAIWMYSLIANCWSKCP---QMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETL---PD 283 (457)
Q Consensus 214 ~~~----~~~v~~yd~~t~~W~~l~---~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~---~~ 283 (457)
... .++++.||+.|++|+.+. .+|.+|.+|++++++.++||+||.+..+...+++++||+++.+|.++ .+
T Consensus 131 ~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~ 210 (482)
T KOG0379|consen 131 TDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGE 210 (482)
T ss_pred ccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCC
Confidence 763 258999999999998874 46899999999999999999999987766799999999999999998 45
Q ss_pred CCCCCcceeEEEECCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEec
Q 012755 284 MNLPRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQ 363 (457)
Q Consensus 284 ~p~~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg 363 (457)
.|.||..|++++++++++++||.......+++++.+|+.+.+|.++..... .|.+|..|..++.+.+++++||
T Consensus 211 ~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~-------~p~~R~~h~~~~~~~~~~l~gG 283 (482)
T KOG0379|consen 211 APSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGD-------LPSPRSGHSLTVSGDHLLLFGG 283 (482)
T ss_pred CCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCC-------CCCCcceeeeEEECCEEEEEcC
Confidence 678999999999999999999988555689999999999999997765443 4569999999999999999997
Q ss_pred C-------CCeEEEEECCCCcEEEeccCC
Q 012755 364 A-------TNVVKKYNKTNNSWTVVKRLP 385 (457)
Q Consensus 364 ~-------~~~v~~Yd~~~~~W~~v~~~p 385 (457)
. ..+++.||.+++.|..+....
T Consensus 284 ~~~~~~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 284 GTDPKQEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred Ccccccccccccccccccccceeeeeccc
Confidence 4 346899999999999997665
No 24
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.91 E-value=2.5e-23 Score=195.75 Aligned_cols=219 Identities=20% Similarity=0.266 Sum_probs=175.3
Q ss_pred CCEEEEEceecCC-------cEEEEEECCCCcEEeC--CCCCCCccceeEEee-CCEEEEEeeecCCC-----CccceEE
Q 012755 205 GTQLLVFGRELSG-------FAIWMYSLIANCWSKC--PQMNLPRCLFGSSSL-GEVAIVAGGTDKNG-----CILKSAE 269 (457)
Q Consensus 205 ~~~lyv~GG~~~~-------~~v~~yd~~t~~W~~l--~~lp~~r~~~~~~~~-~~~iyv~GG~~~~~-----~~~~~v~ 269 (457)
.+.|++|||+..+ ++++.||..+++|+.+ |..|.||+.|.++++ .+.+|+|||-.... --..++|
T Consensus 78 keELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W 157 (521)
T KOG1230|consen 78 KEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLW 157 (521)
T ss_pred cceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhhee
Confidence 4589999997443 7899999999999987 667899999988877 58999999964221 1357899
Q ss_pred EEeCCCCcEEEC--CCCCCCCcceeEEEECCEEEEEeccCCC---CCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCC
Q 012755 270 LYNSELGTWETL--PDMNLPRKLCSGFFMDGKFYIIGGMSSP---TDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPA 344 (457)
Q Consensus 270 ~yd~~t~~W~~~--~~~p~~r~~~~~~~~~g~iyv~GG~~~~---~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~ 344 (457)
.||.+|++|+++ +.-|.+|++|.+++...+|++|||.... ..+.+++++||+.|-+|+++.+-. ..|.
T Consensus 158 ~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsg-------a~Pt 230 (521)
T KOG1230|consen 158 LFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSG-------AGPT 230 (521)
T ss_pred eeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCC-------CCCC
Confidence 999999999998 4568899999999999999999997543 236899999999999999998722 2577
Q ss_pred CCCCCEEEEE-CCEEEEEecC--------------CCeEEEEECCC-----CcEEEeccCCCccCCCCcceEEEEEeCCE
Q 012755 345 MSSPPLVAVV-NNQLYSADQA--------------TNVVKKYNKTN-----NSWTVVKRLPVRANSFNGWGLAFKACGNS 404 (457)
Q Consensus 345 ~r~~~~~~~~-~g~ly~~gg~--------------~~~v~~Yd~~~-----~~W~~v~~~p~~~~~~~~~~~~~~~~~g~ 404 (457)
+|+++.+.+. +|.||+.||+ .+++|..+|+. =.|+.|.+....++.+++++++ +.-+++
T Consensus 231 pRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~-va~n~k 309 (521)
T KOG1230|consen 231 PRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVA-VAKNHK 309 (521)
T ss_pred CCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEE-EecCCc
Confidence 9999999888 9999999984 46799999988 3788888765555555566554 345779
Q ss_pred EEEEcCcCCC--------CCceEEEEEeeCCCCCC
Q 012755 405 LLVIGGHREL--------QGEIIVLHSWDPTDGNS 431 (457)
Q Consensus 405 lyv~GG~~~~--------~~~~~~v~~y~~~~~~w 431 (457)
-|.|||.... +...+++|.||.+.+.|
T Consensus 310 al~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW 344 (521)
T KOG1230|consen 310 ALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRW 344 (521)
T ss_pred eEEecceecccccchhhhhhhhhhhhheecccchh
Confidence 9999998642 12457899999999855
No 25
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.89 E-value=2.3e-22 Score=193.44 Aligned_cols=263 Identities=17% Similarity=0.226 Sum_probs=193.0
Q ss_pred hhhhhhcc-Ccchhhhhccccc--ccEEEEEec-----CccEEEEeCCCCcEEeCC---CCCCCccccCCCeeeEEeCCE
Q 012755 139 KFKSLIAS-GYLYKLRRQLGMV--EHWVYLACI-----LMPWEAFDPLRQRWMRLP---RMQCDECFTSADKESLAVGTQ 207 (457)
Q Consensus 139 ~w~~li~s-~~~~~~r~~~~~~--~~~l~~~~~-----~~~~~~ydp~~~~W~~l~---~~p~~~~~~~~~~~~~~~~~~ 207 (457)
+||+...+ +..++.|..|... ...+.++++ .+.+++||..+++|+.-. .+|.+...+ ..+..|.+
T Consensus 18 rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpgcAA~----GfvcdGtr 93 (830)
T KOG4152|consen 18 RWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPGCAAF----GFVCDGTR 93 (830)
T ss_pred ceEEEecccCCCCCccccchheeeeeeEEEecCCcccchhhhhhhccccceeecchhcCCCCCchhhc----ceEecCce
Confidence 46666553 4455566555543 667777766 467999999999997643 355544333 34778999
Q ss_pred EEEEcee----cCCcEEEEEECCCCcEEeCC-------CCCCCccceeEEeeCCEEEEEeeecCCC--------CccceE
Q 012755 208 LLVFGRE----LSGFAIWMYSLIANCWSKCP-------QMNLPRCLFGSSSLGEVAIVAGGTDKNG--------CILKSA 268 (457)
Q Consensus 208 lyv~GG~----~~~~~v~~yd~~t~~W~~l~-------~lp~~r~~~~~~~~~~~iyv~GG~~~~~--------~~~~~v 268 (457)
||+|||. ..+++++......=.|+++- ++|.||-+|+...++++-|+|||...+. .+++++
T Consensus 94 ilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDl 173 (830)
T KOG4152|consen 94 ILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDL 173 (830)
T ss_pred EEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcce
Confidence 9999995 23455554444444567762 3678999999999999999999974321 478999
Q ss_pred EEEeCCCCc----EEEC---CCCCCCCcceeEEEE------CCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCC
Q 012755 269 ELYNSELGT----WETL---PDMNLPRKLCSGFFM------DGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPS 335 (457)
Q Consensus 269 ~~yd~~t~~----W~~~---~~~p~~r~~~~~~~~------~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~ 335 (457)
+++++.-+. |... ..+|.+|..|.++++ ..++||+||..+. .+.++|..|++|-+|.+..--..
T Consensus 174 Y~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~--RLgDLW~Ldl~Tl~W~kp~~~G~- 250 (830)
T KOG4152|consen 174 YILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC--RLGDLWTLDLDTLTWNKPSLSGV- 250 (830)
T ss_pred EEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc--cccceeEEecceeecccccccCC-
Confidence 999988654 9875 568889999999987 3479999999765 48899999999999998763222
Q ss_pred CCCCCCCCCCCCCCEEEEECCEEEEEecC-------------------CCeEEEEECCCCcEEEec--cCCCccCCCCcc
Q 012755 336 NVGTQSNPAMSSPPLVAVVNNQLYSADQA-------------------TNVVKKYNKTNNSWTVVK--RLPVRANSFNGW 394 (457)
Q Consensus 336 ~~~~~~~~~~r~~~~~~~~~g~ly~~gg~-------------------~~~v~~Yd~~~~~W~~v~--~~p~~~~~~~~~ 394 (457)
.|.+|+-|+++++++++|++||. .+++-++|.++.+|+.+- .+......+.+.
T Consensus 251 ------~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RA 324 (830)
T KOG4152|consen 251 ------APLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARA 324 (830)
T ss_pred ------CCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccc
Confidence 34589999999999999999972 467888999999999763 111111112234
Q ss_pred eEEEEEeCCEEEEEcCcCCC
Q 012755 395 GLAFKACGNSLLVIGGHREL 414 (457)
Q Consensus 395 ~~~~~~~~g~lyv~GG~~~~ 414 (457)
|+.+++++.+||+-.|+++.
T Consensus 325 GHCAvAigtRlYiWSGRDGY 344 (830)
T KOG4152|consen 325 GHCAVAIGTRLYIWSGRDGY 344 (830)
T ss_pred cceeEEeccEEEEEeccchh
Confidence 56678999999999999864
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.82 E-value=3.9e-19 Score=171.36 Aligned_cols=239 Identities=18% Similarity=0.221 Sum_probs=176.6
Q ss_pred CcEEeCC----CCCCCccccCCCeeeEEeCCEEEEEceecCC--cEEEEEECCCCcEEeC---CCCCCCccceeEEeeCC
Q 012755 180 QRWMRLP----RMQCDECFTSADKESLAVGTQLLVFGRELSG--FAIWMYSLIANCWSKC---PQMNLPRCLFGSSSLGE 250 (457)
Q Consensus 180 ~~W~~l~----~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~--~~v~~yd~~t~~W~~l---~~lp~~r~~~~~~~~~~ 250 (457)
-+|..+. +.|.+|..|.+ +++...|.+|||-+.. +.+.+||..+|+|..- .+.|.+-..|+.+..+.
T Consensus 17 ~rWrrV~~~tGPvPrpRHGHRA----VaikELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGt 92 (830)
T KOG4152|consen 17 VRWRRVQQSTGPVPRPRHGHRA----VAIKELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGT 92 (830)
T ss_pred cceEEEecccCCCCCccccchh----eeeeeeEEEecCCcccchhhhhhhccccceeecchhcCCCCCchhhcceEecCc
Confidence 3687664 46777777776 8899999999985443 6899999999999753 57888888889889999
Q ss_pred EEEEEeeecCCCCccceEEEEeCCCCcEEECC-------CCCCCCcceeEEEECCEEEEEeccCCCC--------CCCce
Q 012755 251 VAIVAGGTDKNGCILKSAELYNSELGTWETLP-------DMNLPRKLCSGFFMDGKFYIIGGMSSPT--------DPLTC 315 (457)
Q Consensus 251 ~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~-------~~p~~r~~~~~~~~~g~iyv~GG~~~~~--------~~~~~ 315 (457)
+||+|||....+++.++++.+-...-.|+++. ++|-+|-+|+...+++|-|+|||..+.. .++++
T Consensus 93 rilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnD 172 (830)
T KOG4152|consen 93 RILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLND 172 (830)
T ss_pred eEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcc
Confidence 99999999888888888766665566677763 3566899999999999999999975432 25788
Q ss_pred EEEEECCCC----ceEEcCCCCCCCCCCCCCCCCCCCCEEEEE------CCEEEEEecC----CCeEEEEECCCCcEEEe
Q 012755 316 GEEYNLETR----TWKRIENMYPSNVGTQSNPAMSSPPLVAVV------NNQLYSADQA----TNVVKKYNKTNNSWTVV 381 (457)
Q Consensus 316 ~~~yd~~t~----~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~------~g~ly~~gg~----~~~v~~Yd~~~~~W~~v 381 (457)
+++.++.-+ .|...-.-.. .|.+|..|.++.+ -.++|++||. .+++|..|.++.+|.+.
T Consensus 173 lY~leL~~Gsgvv~W~ip~t~Gv-------~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp 245 (830)
T KOG4152|consen 173 LYILELRPGSGVVAWDIPITYGV-------LPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKP 245 (830)
T ss_pred eEEEEeccCCceEEEecccccCC-------CCCCcccceeEEEEeccCCcceEEEEcccccccccceeEEecceeecccc
Confidence 888887754 3875432111 2338889999877 2479999974 67999999999999986
Q ss_pred c--c-CCCccCCCCcceEEEEEeCCEEEEEcCcCCCCC-------------ceEEEEEeeCCCCCCCCCCeeEe
Q 012755 382 K--R-LPVRANSFNGWGLAFKACGNSLLVIGGHRELQG-------------EIIVLHSWDPTDGNSGEAQWNEL 439 (457)
Q Consensus 382 ~--~-~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~~-------------~~~~v~~y~~~~~~w~~~~W~~l 439 (457)
. . .|.+|.- +.+..+++++|||||.-.... -...+-+++.++. +|..|
T Consensus 246 ~~~G~~PlPRSL-----Hsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~-----~W~tl 309 (830)
T KOG4152|consen 246 SLSGVAPLPRSL-----HSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTM-----AWETL 309 (830)
T ss_pred cccCCCCCCccc-----ccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecch-----heeee
Confidence 4 2 2333332 235578999999999842111 1245567777776 67766
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.77 E-value=9.4e-17 Score=149.88 Aligned_cols=251 Identities=18% Similarity=0.251 Sum_probs=179.0
Q ss_pred ccEEEEEec--CccEEEEeCCC--CcEEeCCCCCCCccccCCCeeeEEeCCEEEEEceecCC--------cEEEEEECCC
Q 012755 160 EHWVYLACI--LMPWEAFDPLR--QRWMRLPRMQCDECFTSADKESLAVGTQLLVFGRELSG--------FAIWMYSLIA 227 (457)
Q Consensus 160 ~~~l~~~~~--~~~~~~ydp~~--~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~--------~~v~~yd~~t 227 (457)
...+|+..+ ...++..|... ..|+++...|-..+...+ .++++++||+|||...+ +++++|||.+
T Consensus 46 g~~~YVGLGs~G~afy~ldL~~~~k~W~~~a~FpG~~rnqa~---~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~ 122 (381)
T COG3055 46 GDTVYVGLGSAGTAFYVLDLKKPGKGWTKIADFPGGARNQAV---AAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPST 122 (381)
T ss_pred cceEEEEeccCCccceehhhhcCCCCceEcccCCCcccccch---heeeCCeEEEeeccccCCCCCceEeeeeEEecCCC
Confidence 557888755 56777777654 489999998876555443 57889999999986322 6899999999
Q ss_pred CcEEeCCC-CCCCccceeEEeeCC-EEEEEeeecCCC---------------------------------CccceEEEEe
Q 012755 228 NCWSKCPQ-MNLPRCLFGSSSLGE-VAIVAGGTDKNG---------------------------------CILKSAELYN 272 (457)
Q Consensus 228 ~~W~~l~~-lp~~r~~~~~~~~~~-~iyv~GG~~~~~---------------------------------~~~~~v~~yd 272 (457)
++|+++.. .|..-..++.+.+++ +||++||.+..- .....+..||
T Consensus 123 nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~ 202 (381)
T COG3055 123 NSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYD 202 (381)
T ss_pred ChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccc
Confidence 99999864 345556777777777 999999975320 1356788999
Q ss_pred CCCCcEEECCCCCC-CCcceeEEEECCEEEEEeccCCCCCCCceEEEEECCC--CceEEcCCCCCCCCCCCCCCCCCCCC
Q 012755 273 SELGTWETLPDMNL-PRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLET--RTWKRIENMYPSNVGTQSNPAMSSPP 349 (457)
Q Consensus 273 ~~t~~W~~~~~~p~-~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t--~~W~~~~~~~~~~~~~~~~~~~r~~~ 349 (457)
|.++.|+.+...|. +++.++.+.-++++.++-|.-..+-....+..++... -+|..+++.|.+.. .+.....++
T Consensus 203 p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~---~~~eGvAGa 279 (381)
T COG3055 203 PSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIG---SNKEGVAGA 279 (381)
T ss_pred cccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCC---CCcccccee
Confidence 99999999986664 5667666666788888888755554555667777664 47999988776321 111112222
Q ss_pred EEEEECCEEEEEecC------------------------CCeEEEEECCCCcEEEeccCCCccCCCCcceEEEEEeCCEE
Q 012755 350 LVAVVNNQLYSADQA------------------------TNVVKKYNKTNNSWTVVKRLPVRANSFNGWGLAFKACGNSL 405 (457)
Q Consensus 350 ~~~~~~g~ly~~gg~------------------------~~~v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~g~l 405 (457)
-.-..++.+.+.||. ..+|+.+| .+.|+.+..+|..+ +.|+ .+..++.|
T Consensus 280 f~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l----~YG~-s~~~nn~v 352 (381)
T COG3055 280 FSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQGL----AYGV-SLSYNNKV 352 (381)
T ss_pred ccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCCc----cceE-EEecCCcE
Confidence 223457787777752 35688887 88999999999865 3444 45789999
Q ss_pred EEEcCcCCCCCceEEEEE
Q 012755 406 LVIGGHRELQGEIIVLHS 423 (457)
Q Consensus 406 yv~GG~~~~~~~~~~v~~ 423 (457)
|++||....+.....++.
T Consensus 353 l~IGGE~~~Gka~~~v~~ 370 (381)
T COG3055 353 LLIGGETSGGKATTRVYS 370 (381)
T ss_pred EEEccccCCCeeeeeEEE
Confidence 999999876655555543
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.59 E-value=1.1e-13 Score=129.43 Aligned_cols=238 Identities=20% Similarity=0.254 Sum_probs=165.6
Q ss_pred eCCCCCCCccccCCCeeeEEeCCEEEEEceecCCcEEEEEECC--CCcEEeCCCCC-CCccceeEEeeCCEEEEEeeecC
Q 012755 184 RLPRMQCDECFTSADKESLAVGTQLLVFGRELSGFAIWMYSLI--ANCWSKCPQMN-LPRCLFGSSSLGEVAIVAGGTDK 260 (457)
Q Consensus 184 ~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~--t~~W~~l~~lp-~~r~~~~~~~~~~~iyv~GG~~~ 260 (457)
.+|.+|.+-... ..+.+++.+||-=| ....+.+..|.. .+.|++++.+| .+|.....++++++||||||...
T Consensus 29 ~lPdlPvg~KnG----~Ga~ig~~~YVGLG-s~G~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk 103 (381)
T COG3055 29 QLPDLPVGFKNG----AGALIGDTVYVGLG-SAGTAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGK 103 (381)
T ss_pred cCCCCCcccccc----ccceecceEEEEec-cCCccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeecccc
Confidence 445566554333 23667888888544 334467777775 56899999877 56778888899999999999864
Q ss_pred CC----CccceEEEEeCCCCcEEECCC-CCCCCcceeEEEECC-EEEEEeccCCCC------------------------
Q 012755 261 NG----CILKSAELYNSELGTWETLPD-MNLPRKLCSGFFMDG-KFYIIGGMSSPT------------------------ 310 (457)
Q Consensus 261 ~~----~~~~~v~~yd~~t~~W~~~~~-~p~~r~~~~~~~~~g-~iyv~GG~~~~~------------------------ 310 (457)
.. ...+++++|||.+++|+++.. .|.....++++.+++ +||++||++...
T Consensus 104 ~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~ 183 (381)
T COG3055 104 SVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAH 183 (381)
T ss_pred CCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHH
Confidence 32 357899999999999999854 355566788888887 999999974310
Q ss_pred ---------CCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecC------CCeEEEEECCC
Q 012755 311 ---------DPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQA------TNVVKKYNKTN 375 (457)
Q Consensus 311 ---------~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~------~~~v~~Yd~~~ 375 (457)
.....+..|||++++|+.+...|. .++++.+++.-++++.++.|. +..++.++...
T Consensus 184 yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf---------~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~ 254 (381)
T COG3055 184 YFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPF---------YGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGG 254 (381)
T ss_pred HhCCCHHHhcccccccccccccchhhhcCcCcc---------cCccCcceeecCCeEEEEcceecCCccccceeEEEecc
Confidence 024568899999999999885544 145554444456778888663 45677787764
Q ss_pred --CcEEEeccCCCccCCCCcceEE---EEEeCCEEEEEcCcCCC------------------CCceEEEEEeeCCCCCCC
Q 012755 376 --NSWTVVKRLPVRANSFNGWGLA---FKACGNSLLVIGGHREL------------------QGEIIVLHSWDPTDGNSG 432 (457)
Q Consensus 376 --~~W~~v~~~p~~~~~~~~~~~~---~~~~~g~lyv~GG~~~~------------------~~~~~~v~~y~~~~~~w~ 432 (457)
.+|..+..+|.+..... .+++ .-..++.+.|.||.+-+ .....+|+++| .+
T Consensus 255 ~~~~w~~l~~lp~~~~~~~-eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g--- 328 (381)
T COG3055 255 DNLKWLKLSDLPAPIGSNK-EGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NG--- 328 (381)
T ss_pred CceeeeeccCCCCCCCCCc-cccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CC---
Confidence 48999999887765442 3322 12347788888886522 11346788888 33
Q ss_pred CCCeeEecccc
Q 012755 433 EAQWNELAVRE 443 (457)
Q Consensus 433 ~~~W~~l~~~~ 443 (457)
.|+.+...|
T Consensus 329 --~Wk~~GeLp 337 (381)
T COG3055 329 --SWKIVGELP 337 (381)
T ss_pred --ceeeecccC
Confidence 699877655
No 29
>PF13964 Kelch_6: Kelch motif
Probab=99.25 E-value=1.6e-11 Score=84.92 Aligned_cols=50 Identities=38% Similarity=0.617 Sum_probs=46.2
Q ss_pred CccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCC
Q 012755 239 PRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPR 288 (457)
Q Consensus 239 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r 288 (457)
||..|++++++++|||+||........+++++||++|++|+++++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 68899999999999999999875577899999999999999999999887
No 30
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=99.06 E-value=7.7e-08 Score=89.50 Aligned_cols=209 Identities=9% Similarity=0.041 Sum_probs=123.9
Q ss_pred eCCEEEEEceecCCcEEEEEECCCCcEEeCCCCCCCcc---c--eeEEe----eCCEEEEEeeecCCCCccceEEEEeCC
Q 012755 204 VGTQLLVFGRELSGFAIWMYSLIANCWSKCPQMNLPRC---L--FGSSS----LGEVAIVAGGTDKNGCILKSAELYNSE 274 (457)
Q Consensus 204 ~~~~lyv~GG~~~~~~v~~yd~~t~~W~~l~~lp~~r~---~--~~~~~----~~~~iyv~GG~~~~~~~~~~v~~yd~~ 274 (457)
.+|.|++..+ ..+.++||.|++|+.+|+.+.++. . .+... -.-||..+.....+ .....+++|++.
T Consensus 4 CnGLlc~~~~----~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~-~~~~~~~Vys~~ 78 (230)
T TIGR01640 4 CDGLICFSYG----KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN-RNQSEHQVYTLG 78 (230)
T ss_pred cceEEEEecC----CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC-CCCccEEEEEeC
Confidence 3555544432 478999999999999987554321 1 11111 12366666543211 134678999999
Q ss_pred CCcEEECCCCCCC-CcceeEEEECCEEEEEeccCCCCCCCceEEEEECCCCceEE-cCCCCCCCCCCCCCCCCCCCCEEE
Q 012755 275 LGTWETLPDMNLP-RKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKR-IENMYPSNVGTQSNPAMSSPPLVA 352 (457)
Q Consensus 275 t~~W~~~~~~p~~-r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~~~~~~~~~r~~~~~~ 352 (457)
+++|+.+...+.. ......+.++|.+|.+...... .....+..||..+.+|++ ++. |... ........++
T Consensus 79 ~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~f~~~i~~-P~~~------~~~~~~~~L~ 150 (230)
T TIGR01640 79 SNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSERFKEFIPL-PCGN------SDSVDYLSLI 150 (230)
T ss_pred CCCccccccCCCCccccCCeEEECCEEEEEEEECCC-CCcEEEEEEEcccceEeeeeec-Cccc------cccccceEEE
Confidence 9999998743322 1122377889999998754321 112378999999999995 542 2200 0012234678
Q ss_pred EECCEEEEEecC----CCeEEEEE-CCCCcEEEeccCCC--ccCCCCcceEEEEEeCCEEEEEcCcCCCCCceEEEEEee
Q 012755 353 VVNNQLYSADQA----TNVVKKYN-KTNNSWTVVKRLPV--RANSFNGWGLAFKACGNSLLVIGGHRELQGEIIVLHSWD 425 (457)
Q Consensus 353 ~~~g~ly~~gg~----~~~v~~Yd-~~~~~W~~v~~~p~--~~~~~~~~~~~~~~~~g~lyv~GG~~~~~~~~~~v~~y~ 425 (457)
.++|+|.++... .-+||+.+ .+.++|++.-.++. ............+..+|+|++..+.. . ...+..||
T Consensus 151 ~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~-~---~~~~~~y~ 226 (230)
T TIGR01640 151 NYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDE-N---PFYIFYYN 226 (230)
T ss_pred EECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCC-C---ceEEEEEe
Confidence 889999988642 23677765 33567998655442 21111111122345678888877541 1 12488899
Q ss_pred CCCC
Q 012755 426 PTDG 429 (457)
Q Consensus 426 ~~~~ 429 (457)
++++
T Consensus 227 ~~~~ 230 (230)
T TIGR01640 227 VGEN 230 (230)
T ss_pred ccCC
Confidence 9863
No 31
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.04 E-value=1.5e-10 Score=112.48 Aligned_cols=197 Identities=17% Similarity=0.212 Sum_probs=138.1
Q ss_pred CCCCcEEeCCC----------CCCCccceeEEeeCC--EEEEEeeecCCCCccceEEEEeCCCCcEEECC---CCCCCCc
Q 012755 225 LIANCWSKCPQ----------MNLPRCLFGSSSLGE--VAIVAGGTDKNGCILKSAELYNSELGTWETLP---DMNLPRK 289 (457)
Q Consensus 225 ~~t~~W~~l~~----------lp~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~~p~~r~ 289 (457)
+.+-.|.++++ -|..|.+|.++...+ -||+.||+++- +.+.+.|.|+...+.|..+. ..|..|.
T Consensus 236 ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~-~~l~DFW~Y~v~e~~W~~iN~~t~~PG~Rs 314 (723)
T KOG2437|consen 236 EYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGT-QDLADFWAYSVKENQWTCINRDTEGPGARS 314 (723)
T ss_pred cccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccc-hhHHHHHhhcCCcceeEEeecCCCCCcchh
Confidence 44667887754 256789999887654 89999999976 45889999999999999873 4688899
Q ss_pred ceeEEEECC--EEEEEeccCCCC-----CCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCE--EEE
Q 012755 290 LCSGFFMDG--KFYIIGGMSSPT-----DPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQ--LYS 360 (457)
Q Consensus 290 ~~~~~~~~g--~iyv~GG~~~~~-----~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~--ly~ 360 (457)
.|.++.... |+|+.|-+-+.. ...+++|+||..++.|..+.--.. ..+.|+...-|.+++.+.+ ||+
T Consensus 315 CHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~----~dGGP~~vfDHqM~Vd~~k~~iyV 390 (723)
T KOG2437|consen 315 CHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTA----ADGGPKLVFDHQMCVDSEKHMIYV 390 (723)
T ss_pred hhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEeccccc----ccCCcceeecceeeEecCcceEEE
Confidence 998887644 999998763321 246789999999999998863222 1134557778889988776 999
Q ss_pred EecC--------CCeEEEEECCCCcEEEeccCCCcc-------CCCCcceEEEEEeCCEEEEEcCcCCCCCceEEEEEee
Q 012755 361 ADQA--------TNVVKKYNKTNNSWTVVKRLPVRA-------NSFNGWGLAFKACGNSLLVIGGHRELQGEIIVLHSWD 425 (457)
Q Consensus 361 ~gg~--------~~~v~~Yd~~~~~W~~v~~~p~~~-------~~~~~~~~~~~~~~g~lyv~GG~~~~~~~~~~v~~y~ 425 (457)
+||. ...++.||.....|+..+.--..+ .++-+........+..+|++||..... ...-.+.|+
T Consensus 391 fGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~-El~L~f~y~ 469 (723)
T KOG2437|consen 391 FGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKT-ELNLFFSYD 469 (723)
T ss_pred ecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccce-EEeehhcce
Confidence 9984 356899999999998765321111 011111123345578999999976432 333444554
Q ss_pred CC
Q 012755 426 PT 427 (457)
Q Consensus 426 ~~ 427 (457)
..
T Consensus 470 I~ 471 (723)
T KOG2437|consen 470 ID 471 (723)
T ss_pred ec
Confidence 43
No 32
>PF13964 Kelch_6: Kelch motif
Probab=99.03 E-value=7.7e-10 Score=76.49 Aligned_cols=48 Identities=31% Similarity=0.522 Sum_probs=43.6
Q ss_pred CCcceeEEEECCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCC
Q 012755 287 PRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYP 334 (457)
Q Consensus 287 ~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~ 334 (457)
+|..+++++++++|||+||........+++++||+++++|+.+++|+.
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCC
Confidence 588899999999999999998755578999999999999999999886
No 33
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.03 E-value=3.8e-10 Score=76.96 Aligned_cols=47 Identities=38% Similarity=0.604 Sum_probs=43.1
Q ss_pred CccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCC
Q 012755 239 PRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMN 285 (457)
Q Consensus 239 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p 285 (457)
||..|++++++++|||+||.+......+++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 68899999999999999999886688999999999999999999886
No 34
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=98.95 E-value=5.4e-10 Score=108.67 Aligned_cols=191 Identities=13% Similarity=0.098 Sum_probs=128.2
Q ss_pred CCCCcEEeCCCCCC------CccccCCCeeeEEeCC--EEEEEceecCC---cEEEEEECCCCcEEeC---CCCCCCccc
Q 012755 177 PLRQRWMRLPRMQC------DECFTSADKESLAVGT--QLLVFGRELSG---FAIWMYSLIANCWSKC---PQMNLPRCL 242 (457)
Q Consensus 177 p~~~~W~~l~~~p~------~~~~~~~~~~~~~~~~--~lyv~GG~~~~---~~v~~yd~~t~~W~~l---~~lp~~r~~ 242 (457)
+-+.+|.++++... .+.....++.++...+ .||+.||.++. .++|.|+...+.|..+ ...|..|..
T Consensus 236 ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsC 315 (723)
T KOG2437|consen 236 EYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSC 315 (723)
T ss_pred cccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhh
Confidence 34568988765321 0111112334566544 99999998765 5789999999999887 347889999
Q ss_pred eeEEeeCC--EEEEEeeecCCC-----CccceEEEEeCCCCcEEECCC------CCCCCcceeEEEECCE--EEEEeccC
Q 012755 243 FGSSSLGE--VAIVAGGTDKNG-----CILKSAELYNSELGTWETLPD------MNLPRKLCSGFFMDGK--FYIIGGMS 307 (457)
Q Consensus 243 ~~~~~~~~--~iyv~GG~~~~~-----~~~~~v~~yd~~t~~W~~~~~------~p~~r~~~~~~~~~g~--iyv~GG~~ 307 (457)
|.++.... ++|+.|-+-+.. ....++|+||..++.|..+.- -|.....|.+++.+++ |||+||+.
T Consensus 316 HRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~ 395 (723)
T KOG2437|consen 316 HRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRI 395 (723)
T ss_pred hhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCee
Confidence 99887654 999999764321 346789999999999998732 3455678889998877 99999986
Q ss_pred CCC--CCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEE--EECCEEEEEecCCCe
Q 012755 308 SPT--DPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVA--VVNNQLYSADQATNV 367 (457)
Q Consensus 308 ~~~--~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~g~ly~~gg~~~~ 367 (457)
... .....++.||.....|..+..-..-..+.......|.++.+- .-+..+|++||...+
T Consensus 396 ~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~ 459 (723)
T KOG2437|consen 396 LTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSK 459 (723)
T ss_pred ccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccc
Confidence 432 356778999999999987753222000001112234444332 236678999875443
No 35
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.91 E-value=1.9e-09 Score=73.41 Aligned_cols=47 Identities=32% Similarity=0.599 Sum_probs=42.4
Q ss_pred CCcceeEEEECCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCC
Q 012755 287 PRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMY 333 (457)
Q Consensus 287 ~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~ 333 (457)
+|..+++++++++|||+||.+......+.+++||+.+++|+++++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 58899999999999999999886667899999999999999999875
No 36
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.85 E-value=8e-09 Score=70.98 Aligned_cols=47 Identities=26% Similarity=0.432 Sum_probs=41.6
Q ss_pred CccceeEEeeCCEEEEEeee--cCCCCccceEEEEeCCCCcEEECCCCC
Q 012755 239 PRCLFGSSSLGEVAIVAGGT--DKNGCILKSAELYNSELGTWETLPDMN 285 (457)
Q Consensus 239 ~r~~~~~~~~~~~iyv~GG~--~~~~~~~~~v~~yd~~t~~W~~~~~~p 285 (457)
||..|++++++++|||+||+ +......+++++||+++++|+.++++|
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 68899999999999999999 344467899999999999999998875
No 37
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.84 E-value=9e-09 Score=70.71 Aligned_cols=48 Identities=25% Similarity=0.463 Sum_probs=43.0
Q ss_pred CCEEEEEeeec-CCCCccceEEEEeCCCCcEEECCCCCCCCcceeEEEE
Q 012755 249 GEVAIVAGGTD-KNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFM 296 (457)
Q Consensus 249 ~~~iyv~GG~~-~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 296 (457)
+++|||+||.+ .....++++++||+.+++|++++++|.+|..|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 57899999998 4457889999999999999999999999999998763
No 38
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.83 E-value=5e-09 Score=72.04 Aligned_cols=48 Identities=31% Similarity=0.527 Sum_probs=32.1
Q ss_pred CccceeEEee-CCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCC
Q 012755 239 PRCLFGSSSL-GEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNL 286 (457)
Q Consensus 239 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~ 286 (457)
||..|+++.+ +++||++||.+..+..++++++||+++++|++++++|.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCCC
Confidence 6889999988 58999999998776789999999999999999988773
No 39
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.76 E-value=2.4e-08 Score=68.55 Aligned_cols=47 Identities=28% Similarity=0.465 Sum_probs=40.9
Q ss_pred CCcceeEEEECCEEEEEecc--CCCCCCCceEEEEECCCCceEEcCCCC
Q 012755 287 PRKLCSGFFMDGKFYIIGGM--SSPTDPLTCGEEYNLETRTWKRIENMY 333 (457)
Q Consensus 287 ~r~~~~~~~~~g~iyv~GG~--~~~~~~~~~~~~yd~~t~~W~~~~~~~ 333 (457)
+|..|++++++++|||+||+ .......+++++||+++++|+++++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 57889999999999999999 444457889999999999999998764
No 40
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.69 E-value=1.2e-05 Score=74.73 Aligned_cols=198 Identities=12% Similarity=0.047 Sum_probs=114.7
Q ss_pred ccEEEEeCCCCcEEeCCCCCCCccccCCCeeeEEeC-----CEEEEEcee---cCCcEEEEEECCCCcEEeCCCCCCC-c
Q 012755 170 MPWEAFDPLRQRWMRLPRMQCDECFTSADKESLAVG-----TQLLVFGRE---LSGFAIWMYSLIANCWSKCPQMNLP-R 240 (457)
Q Consensus 170 ~~~~~ydp~~~~W~~l~~~p~~~~~~~~~~~~~~~~-----~~lyv~GG~---~~~~~v~~yd~~t~~W~~l~~lp~~-r 240 (457)
..+.++||.+++|..+|+.+.+..........+..+ -+|..+... .....+.+|+..+++|+.+...+.. .
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~~~~~ 93 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPPHHP 93 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCCCCcc
Confidence 567889999999999986544321111100111111 144444322 1234789999999999998643321 1
Q ss_pred cceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEE-CCCCCCCC----cceeEEEECCEEEEEeccCCCCCCCce
Q 012755 241 CLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWET-LPDMNLPR----KLCSGFFMDGKFYIIGGMSSPTDPLTC 315 (457)
Q Consensus 241 ~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~~p~~r----~~~~~~~~~g~iyv~GG~~~~~~~~~~ 315 (457)
.....+.++|.+|.+.-.... .....+..||..+.+|+. ++. |..+ .....+.++|++.++....... .-.
T Consensus 94 ~~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~f~~~i~~-P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~--~~~ 169 (230)
T TIGR01640 94 LKSRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSERFKEFIPL-PCGNSDSVDYLSLINYKGKLAVLKQKKDTN--NFD 169 (230)
T ss_pred ccCCeEEECCEEEEEEEECCC-CCcEEEEEEEcccceEeeeeec-CccccccccceEEEEECCEEEEEEecCCCC--cEE
Confidence 112256789999998754321 111268999999999995 543 3322 2345778899999886543211 134
Q ss_pred EEEEE-CCCCceEEcCCCCCCCCCCCCCCCCC--CCCEEEEECCEEEEEecC--CCeEEEEECCCC
Q 012755 316 GEEYN-LETRTWKRIENMYPSNVGTQSNPAMS--SPPLVAVVNNQLYSADQA--TNVVKKYNKTNN 376 (457)
Q Consensus 316 ~~~yd-~~t~~W~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~g~ly~~gg~--~~~v~~Yd~~~~ 376 (457)
+|+.+ ..+..|+++-.++.++. +... ..+..+..+|+|++.... ...+..||++++
T Consensus 170 IWvl~d~~~~~W~k~~~i~~~~~-----~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 170 LWVLNDAGKQEWSKLFTVPIPPL-----PDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVGEN 230 (230)
T ss_pred EEEECCCCCCceeEEEEEcCcch-----hhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEeccCC
Confidence 55553 34567998654432100 0011 112334567888887643 223889999875
No 41
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.69 E-value=2.4e-06 Score=78.93 Aligned_cols=152 Identities=18% Similarity=0.213 Sum_probs=98.1
Q ss_pred EEEEECCCCcEEeCCCCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCC----CcEEECC-CCCCCCcceeEE
Q 012755 220 IWMYSLIANCWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSEL----GTWETLP-DMNLPRKLCSGF 294 (457)
Q Consensus 220 v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t----~~W~~~~-~~p~~r~~~~~~ 294 (457)
-..||+.|++++.+....-..+.-.+..-+|++...||..+. ...+-.|++.+ ..|.+.+ .|..+|.+.++.
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~ 124 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTAT 124 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECcccccCCCccccce
Confidence 468999999999876433333322223348899999998653 35677788865 5798876 588999988887
Q ss_pred EE-CCEEEEEeccCCCCCCCceEEEEECCCC-----ceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeE
Q 012755 295 FM-DGKFYIIGGMSSPTDPLTCGEEYNLETR-----TWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQATNVV 368 (457)
Q Consensus 295 ~~-~g~iyv~GG~~~~~~~~~~~~~yd~~t~-----~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~~~~v 368 (457)
.+ +|+++|+||.... ..+.+.+... .|..+..... ..+...+.+..+.-+|+||+++.. .-
T Consensus 125 ~L~DG~vlIvGG~~~~-----t~E~~P~~~~~~~~~~~~~l~~~~~------~~~~nlYP~~~llPdG~lFi~an~--~s 191 (243)
T PF07250_consen 125 TLPDGRVLIVGGSNNP-----TYEFWPPKGPGPGPVTLPFLSQTSD------TLPNNLYPFVHLLPDGNLFIFANR--GS 191 (243)
T ss_pred ECCCCCEEEEeCcCCC-----cccccCCccCCCCceeeecchhhhc------cCccccCceEEEcCCCCEEEEEcC--Cc
Confidence 66 8999999998632 2233333221 1221221100 001123333444559999999864 56
Q ss_pred EEEECCCCcE-EEeccCCCc
Q 012755 369 KKYNKTNNSW-TVVKRLPVR 387 (457)
Q Consensus 369 ~~Yd~~~~~W-~~v~~~p~~ 387 (457)
..||+.++++ +.++.+|..
T Consensus 192 ~i~d~~~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 192 IIYDYKTNTVVRTLPDLPGG 211 (243)
T ss_pred EEEeCCCCeEEeeCCCCCCC
Confidence 6789999987 788888865
No 42
>smart00612 Kelch Kelch domain.
Probab=98.67 E-value=4.5e-08 Score=66.37 Aligned_cols=47 Identities=36% Similarity=0.567 Sum_probs=41.3
Q ss_pred EEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCcceeEEEECC
Q 012755 251 VAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFMDG 298 (457)
Q Consensus 251 ~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g 298 (457)
+||++||.+.. ...+++++||+.+++|+.+++|+.+|..+++++++|
T Consensus 1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-ceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 48999998753 557899999999999999999999999999888765
No 43
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.65 E-value=3.1e-08 Score=68.05 Aligned_cols=47 Identities=34% Similarity=0.561 Sum_probs=31.5
Q ss_pred CCcceeEEEE-CCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCC
Q 012755 287 PRKLCSGFFM-DGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMY 333 (457)
Q Consensus 287 ~r~~~~~~~~-~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~ 333 (457)
||..|+++.+ +++||++||.+......+++++||+++++|++++++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 5888999988 5999999999876667899999999999999997765
No 44
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.54 E-value=1.8e-07 Score=64.13 Aligned_cols=48 Identities=29% Similarity=0.512 Sum_probs=41.1
Q ss_pred CCEEEEEeccC-CCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEE
Q 012755 297 DGKFYIIGGMS-SPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVV 354 (457)
Q Consensus 297 ~g~iyv~GG~~-~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 354 (457)
+++|||+||.. ......+++++||+.+++|++++++|+ +|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~----------~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPP----------PRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCC----------CccceEEEEC
Confidence 58999999998 345578999999999999999988776 8999988763
No 45
>PLN02772 guanylate kinase
Probab=98.45 E-value=1.3e-06 Score=85.64 Aligned_cols=84 Identities=17% Similarity=0.207 Sum_probs=68.4
Q ss_pred CCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEEC---CCCCCCCcceeEEEE-CCEEEEEeccCCCCCC
Q 012755 237 NLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETL---PDMNLPRKLCSGFFM-DGKFYIIGGMSSPTDP 312 (457)
Q Consensus 237 p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~---~~~p~~r~~~~~~~~-~g~iyv~GG~~~~~~~ 312 (457)
..++..++++.+++++||+||.++.+...+.+++||..|++|... ...|.+|.+|+++++ +++|+|+++....
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~--- 98 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP--- 98 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC---
Confidence 347888999999999999999887655678999999999999886 467889999999988 6899999875543
Q ss_pred CceEEEEECCC
Q 012755 313 LTCGEEYNLET 323 (457)
Q Consensus 313 ~~~~~~yd~~t 323 (457)
..++|.....|
T Consensus 99 ~~~~w~l~~~t 109 (398)
T PLN02772 99 DDSIWFLEVDT 109 (398)
T ss_pred ccceEEEEcCC
Confidence 24566665554
No 46
>smart00612 Kelch Kelch domain.
Probab=98.40 E-value=6.1e-07 Score=60.67 Aligned_cols=47 Identities=34% Similarity=0.540 Sum_probs=39.9
Q ss_pred EEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECC
Q 012755 299 KFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNN 356 (457)
Q Consensus 299 ~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g 356 (457)
+||++||.... ...+.+++||+.+++|+.+++|+. .|..+++++++|
T Consensus 1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~~~----------~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLPSMPT----------PRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-ceeeeEEEECCCCCeEccCCCCCC----------ccccceEEEeCC
Confidence 48999998653 357889999999999999999887 888888888765
No 47
>PF13854 Kelch_5: Kelch motif
Probab=98.28 E-value=1.9e-06 Score=56.83 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=36.1
Q ss_pred CCCCccceeEEeeCCEEEEEeeecC-CCCccceEEEEeCCCC
Q 012755 236 MNLPRCLFGSSSLGEVAIVAGGTDK-NGCILKSAELYNSELG 276 (457)
Q Consensus 236 lp~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~v~~yd~~t~ 276 (457)
+|.+|..|++++++++||++||.+. .....+++++||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 4789999999999999999999984 5578899999998763
No 48
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.27 E-value=0.0015 Score=65.92 Aligned_cols=236 Identities=12% Similarity=0.086 Sum_probs=135.4
Q ss_pred cccEEEEEecCccEEEEeCCCC--cEEeCCCCCCCccc----cCCCeeeEEeCCEEEEEceecCCcEEEEEECCCC--cE
Q 012755 159 VEHWVYLACILMPWEAFDPLRQ--RWMRLPRMQCDECF----TSADKESLAVGTQLLVFGRELSGFAIWMYSLIAN--CW 230 (457)
Q Consensus 159 ~~~~l~~~~~~~~~~~ydp~~~--~W~~l~~~p~~~~~----~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~--~W 230 (457)
.++.+|+......+.+||..+. .|..-..-...... .......+..++.+|+.+. ...++.+|..|+ .|
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~---~g~l~ald~~tG~~~W 144 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE---KGQVYALNAEDGEVAW 144 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC---CCEEEEEECCCCCCcc
Confidence 4778888876778899998755 68642211100000 0001124566888887542 346899999877 48
Q ss_pred EeCCCCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCc--EEECCCCCC--CCcceeEEEECCEEEEEecc
Q 012755 231 SKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGT--WETLPDMNL--PRKLCSGFFMDGKFYIIGGM 306 (457)
Q Consensus 231 ~~l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~--~r~~~~~~~~~g~iyv~GG~ 306 (457)
+.-.+ .+ ...+.++.++.+|+..+ ...++.+|+++++ |+.-...|. .+...+.++.++.+|+..+
T Consensus 145 ~~~~~--~~-~~ssP~v~~~~v~v~~~-------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~- 213 (394)
T PRK11138 145 QTKVA--GE-ALSRPVVSDGLVLVHTS-------NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGD- 213 (394)
T ss_pred cccCC--Cc-eecCCEEECCEEEEECC-------CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcC-
Confidence 65321 11 11223456888887532 2468999999887 987543322 1222344566788877532
Q ss_pred CCCCCCCceEEEEECCCCc--eEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEECCCC--cEEEec
Q 012755 307 SSPTDPLTCGEEYNLETRT--WKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQATNVVKKYNKTNN--SWTVVK 382 (457)
Q Consensus 307 ~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~~~~v~~Yd~~~~--~W~~v~ 382 (457)
...+..+|+++++ |+.-...+.. +...........+.++.++.+|+.+ ..+.++.+|++++ .|+.-
T Consensus 214 ------~g~v~a~d~~~G~~~W~~~~~~~~~--~~~~~~~~~~~~sP~v~~~~vy~~~-~~g~l~ald~~tG~~~W~~~- 283 (394)
T PRK11138 214 ------NGRVSAVLMEQGQLIWQQRISQPTG--ATEIDRLVDVDTTPVVVGGVVYALA-YNGNLVALDLRSGQIVWKRE- 283 (394)
T ss_pred ------CCEEEEEEccCChhhheeccccCCC--ccchhcccccCCCcEEECCEEEEEE-cCCeEEEEECCCCCEEEeec-
Confidence 2357788888764 8643221110 0000000011123456789999876 4578999999886 48752
Q ss_pred cCCCccCCCCcceEEEEEeCCEEEEEcCcCCCCCceEEEEEeeCCCCCCCCCCee
Q 012755 383 RLPVRANSFNGWGLAFKACGNSLLVIGGHRELQGEIIVLHSWDPTDGNSGEAQWN 437 (457)
Q Consensus 383 ~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~~~~~~v~~y~~~~~~w~~~~W~ 437 (457)
.... ..++..+++||+..... .++.+|+++ ++..|+
T Consensus 284 -~~~~--------~~~~~~~~~vy~~~~~g-------~l~ald~~t---G~~~W~ 319 (394)
T PRK11138 284 -YGSV--------NDFAVDGGRIYLVDQND-------RVYALDTRG---GVELWS 319 (394)
T ss_pred -CCCc--------cCcEEECCEEEEEcCCC-------eEEEEECCC---CcEEEc
Confidence 1111 11345689999976432 588888877 555675
No 49
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=98.27 E-value=0.00031 Score=68.85 Aligned_cols=38 Identities=11% Similarity=0.105 Sum_probs=34.5
Q ss_pred CCCCCcHHHHhhhceecc-ccccCcccccChhhhhhhcc
Q 012755 109 FLPGLHDDATLDILAWSS-RSDYPTLSCLNRKFKSLIAS 146 (457)
Q Consensus 109 ~~~~LPddl~~~iLarlp-~~~~~~l~~v~k~w~~li~s 146 (457)
.|..||+||+..|..+|| ..++.++|+||+.||+.+..
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 488999999999999995 66899999999999998875
No 50
>PLN02772 guanylate kinase
Probab=98.23 E-value=1e-05 Score=79.42 Aligned_cols=83 Identities=12% Similarity=0.140 Sum_probs=64.9
Q ss_pred CCCcceeEEEECCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEE-CCEEEEEecC
Q 012755 286 LPRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVV-NNQLYSADQA 364 (457)
Q Consensus 286 ~~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~g~ly~~gg~ 364 (457)
.++..++++.+++++||+||.+......+.+++||+.|++|....-... .|.+|.+|+++++ +++|+++++.
T Consensus 23 ~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~-------~P~~r~GhSa~v~~~~rilv~~~~ 95 (398)
T PLN02772 23 KPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGT-------GPKPCKGYSAVVLNKDRILVIKKG 95 (398)
T ss_pred CCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCC-------CCCCCCcceEEEECCceEEEEeCC
Confidence 3677889999999999999987755467899999999999997654322 4558999999988 6899999742
Q ss_pred ---CCeEEEEECCC
Q 012755 365 ---TNVVKKYNKTN 375 (457)
Q Consensus 365 ---~~~v~~Yd~~~ 375 (457)
..++|.....+
T Consensus 96 ~~~~~~~w~l~~~t 109 (398)
T PLN02772 96 SAPDDSIWFLEVDT 109 (398)
T ss_pred CCCccceEEEEcCC
Confidence 34566666554
No 51
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.19 E-value=2.1e-05 Score=72.74 Aligned_cols=145 Identities=17% Similarity=0.263 Sum_probs=98.5
Q ss_pred EEEeCCCCcEEeCCCCCCCccccCCCeeeEEeCCEEEEEceecC-CcEEEEEECCC----CcEEeCC-CCCCCccceeEE
Q 012755 173 EAFDPLRQRWMRLPRMQCDECFTSADKESLAVGTQLLVFGRELS-GFAIWMYSLIA----NCWSKCP-QMNLPRCLFGSS 246 (457)
Q Consensus 173 ~~ydp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~-~~~v~~yd~~t----~~W~~l~-~lp~~r~~~~~~ 246 (457)
..||+.+++++.+......-|..+ .+..+|.+++.||... ...+-.|+|.+ ..|.+.+ .|..+|...++.
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg----~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~ 124 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGG----AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTAT 124 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCc----CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccce
Confidence 569999999998875554444433 2556889999999744 35678899876 6798876 589999988887
Q ss_pred ee-CCEEEEEeeecCCCCccceEEEEeCCCC-----cEEECCCC----CCCCcceeEEEECCEEEEEeccCCCCCCCceE
Q 012755 247 SL-GEVAIVAGGTDKNGCILKSAELYNSELG-----TWETLPDM----NLPRKLCSGFFMDGKFYIIGGMSSPTDPLTCG 316 (457)
Q Consensus 247 ~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~-----~W~~~~~~----p~~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~ 316 (457)
.+ +|+++|+||... ...|.+.+... .|..+... +...+-+....-+|+|++++.. ..
T Consensus 125 ~L~DG~vlIvGG~~~-----~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~--------~s 191 (243)
T PF07250_consen 125 TLPDGRVLIVGGSNN-----PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR--------GS 191 (243)
T ss_pred ECCCCCEEEEeCcCC-----CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC--------Cc
Confidence 66 889999999762 23454444221 23333221 1122223344559999999753 34
Q ss_pred EEEECCCCce-EEcCCCCC
Q 012755 317 EEYNLETRTW-KRIENMYP 334 (457)
Q Consensus 317 ~~yd~~t~~W-~~~~~~~~ 334 (457)
..||+.++++ ..++.+|.
T Consensus 192 ~i~d~~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 192 IIYDYKTNTVVRTLPDLPG 210 (243)
T ss_pred EEEeCCCCeEEeeCCCCCC
Confidence 6799999987 67877765
No 52
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.16 E-value=0.0026 Score=64.10 Aligned_cols=223 Identities=17% Similarity=0.122 Sum_probs=132.1
Q ss_pred cccEEEEEecCccEEEEeCCCC--cEEeCCCCCCCccccCCCeeeEEeCCEEEEEceecCCcEEEEEECCCCc--EEeCC
Q 012755 159 VEHWVYLACILMPWEAFDPLRQ--RWMRLPRMQCDECFTSADKESLAVGTQLLVFGRELSGFAIWMYSLIANC--WSKCP 234 (457)
Q Consensus 159 ~~~~l~~~~~~~~~~~ydp~~~--~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~--W~~l~ 234 (457)
.++.+|+......++++|..+. .|..-. +.+. .. .-+..++.+|+..+ ...++.+|+.+++ |+.-.
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~--~~~~--~s---sP~v~~~~v~v~~~---~g~l~ald~~tG~~~W~~~~ 188 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKV--AGEA--LS---RPVVSDGLVLVHTS---NGMLQALNESDGAVKWTVNL 188 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccC--CCce--ec---CCEEECCEEEEECC---CCEEEEEEccCCCEeeeecC
Confidence 3677887666678999998765 675432 1111 11 12556788887543 3468999998876 87643
Q ss_pred CCCC--CccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCc--EEECCCCCCC-----C---cceeEEEECCEEEE
Q 012755 235 QMNL--PRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGT--WETLPDMNLP-----R---KLCSGFFMDGKFYI 302 (457)
Q Consensus 235 ~lp~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~-----r---~~~~~~~~~g~iyv 302 (457)
..|. .+...+-++.++.+|+..+ ...+..+|+.+++ |+.-...+.. + ...+.++.++.+|+
T Consensus 189 ~~~~~~~~~~~sP~v~~~~v~~~~~-------~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~ 261 (394)
T PRK11138 189 DVPSLTLRGESAPATAFGGAIVGGD-------NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYA 261 (394)
T ss_pred CCCcccccCCCCCEEECCEEEEEcC-------CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEE
Confidence 2221 1112233445677776432 2457788988875 8753221211 1 12344567999998
Q ss_pred EeccCCCCCCCceEEEEECCCCc--eEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEECCCC--cE
Q 012755 303 IGGMSSPTDPLTCGEEYNLETRT--WKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQATNVVKKYNKTNN--SW 378 (457)
Q Consensus 303 ~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~~~~v~~Yd~~~~--~W 378 (457)
.+. ...+.++|+++++ |+.-. .. . ...++.+++||+.. ..+.++.+|++++ .|
T Consensus 262 ~~~-------~g~l~ald~~tG~~~W~~~~--~~----------~---~~~~~~~~~vy~~~-~~g~l~ald~~tG~~~W 318 (394)
T PRK11138 262 LAY-------NGNLVALDLRSGQIVWKREY--GS----------V---NDFAVDGGRIYLVD-QNDRVYALDTRGGVELW 318 (394)
T ss_pred EEc-------CCeEEEEECCCCCEEEeecC--CC----------c---cCcEEECCEEEEEc-CCCeEEEEECCCCcEEE
Confidence 642 2468899998874 87521 11 1 12456789999876 4578999999876 48
Q ss_pred EEeccCCCccCCCCcceEEEEEeCCEEEEEcCcCCCCCceEEEEEeeCCCCCCCCCCeeE
Q 012755 379 TVVKRLPVRANSFNGWGLAFKACGNSLLVIGGHRELQGEIIVLHSWDPTDGNSGEAQWNE 438 (457)
Q Consensus 379 ~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~~~~~~v~~y~~~~~~w~~~~W~~ 438 (457)
+.-. +.. .. . ...+..+|+||+... ++ .++.+|+.+ |+..|+.
T Consensus 319 ~~~~-~~~-~~----~-~sp~v~~g~l~v~~~-~G------~l~~ld~~t---G~~~~~~ 361 (394)
T PRK11138 319 SQSD-LLH-RL----L-TAPVLYNGYLVVGDS-EG------YLHWINRED---GRFVAQQ 361 (394)
T ss_pred cccc-cCC-Cc----c-cCCEEECCEEEEEeC-CC------EEEEEECCC---CCEEEEE
Confidence 6421 111 11 1 123356899987542 22 477889887 6667763
No 53
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.16 E-value=5.1e-07 Score=61.33 Aligned_cols=42 Identities=21% Similarity=0.468 Sum_probs=36.8
Q ss_pred CCCCcHHHHhhhceeccccccCcccccChhhhhhhccCcchh
Q 012755 110 LPGLHDDATLDILAWSSRSDYPTLSCLNRKFKSLIASGYLYK 151 (457)
Q Consensus 110 ~~~LPddl~~~iLarlp~~~~~~l~~v~k~w~~li~s~~~~~ 151 (457)
|..||+|++.+|+++++..++.+++.|||+|+.++.++.+++
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~ 42 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWR 42 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhh
Confidence 568999999999999999999999999999999998886654
No 54
>PF13854 Kelch_5: Kelch motif
Probab=98.08 E-value=8.8e-06 Score=53.66 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=35.1
Q ss_pred CCCCCcceeEEEECCEEEEEeccCC-CCCCCceEEEEECCC
Q 012755 284 MNLPRKLCSGFFMDGKFYIIGGMSS-PTDPLTCGEEYNLET 323 (457)
Q Consensus 284 ~p~~r~~~~~~~~~g~iyv~GG~~~-~~~~~~~~~~yd~~t 323 (457)
+|.+|..|++++++++||++||... .....+++++||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 4788999999999999999999984 555789999999876
No 55
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.03 E-value=0.0082 Score=55.56 Aligned_cols=195 Identities=13% Similarity=0.120 Sum_probs=114.1
Q ss_pred EEeCCEEEEEceecCCcEEEEEECCCCc--EEeCCCCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCc--
Q 012755 202 LAVGTQLLVFGRELSGFAIWMYSLIANC--WSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGT-- 277 (457)
Q Consensus 202 ~~~~~~lyv~GG~~~~~~v~~yd~~t~~--W~~l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~-- 277 (457)
+..++.+|+.. ....++.+|..+++ |+.-. +.+- .......++.+|+..+ ...+..+|..+++
T Consensus 33 ~~~~~~v~~~~---~~~~l~~~d~~tG~~~W~~~~--~~~~-~~~~~~~~~~v~v~~~-------~~~l~~~d~~tG~~~ 99 (238)
T PF13360_consen 33 VPDGGRVYVAS---GDGNLYALDAKTGKVLWRFDL--PGPI-SGAPVVDGGRVYVGTS-------DGSLYALDAKTGKVL 99 (238)
T ss_dssp EEETTEEEEEE---TTSEEEEEETTTSEEEEEEEC--SSCG-GSGEEEETTEEEEEET-------TSEEEEEETTTSCEE
T ss_pred EEeCCEEEEEc---CCCEEEEEECCCCCEEEEeec--cccc-cceeeecccccccccc-------eeeeEecccCCccee
Confidence 34788888873 34579999998875 66543 2221 1123677889988752 2379999988886
Q ss_pred EE-ECCCCCCC--CcceeEEEECCEEEEEeccCCCCCCCceEEEEECCCCc--eEEcCCCCCCCCCCCCCCCCCCCCEEE
Q 012755 278 WE-TLPDMNLP--RKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRT--WKRIENMYPSNVGTQSNPAMSSPPLVA 352 (457)
Q Consensus 278 W~-~~~~~p~~--r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~r~~~~~~ 352 (457)
|+ .....+.. .......+.++.+|+... ...+.++|+++++ |+.-...+... .............+
T Consensus 100 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~l~~~d~~tG~~~w~~~~~~~~~~--~~~~~~~~~~~~~~ 170 (238)
T PF13360_consen 100 WSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-------SGKLVALDPKTGKLLWKYPVGEPRGS--SPISSFSDINGSPV 170 (238)
T ss_dssp EEEEE-SSCTCSTB--SEEEEETTEEEEEET-------CSEEEEEETTTTEEEEEEESSTT-SS----EEEETTEEEEEE
T ss_pred eeeccccccccccccccCceEecCEEEEEec-------cCcEEEEecCCCcEEEEeecCCCCCC--cceeeecccccceE
Confidence 98 44332222 233444555788877642 4578999999874 77644332200 00000000112233
Q ss_pred EECCEEEEEecCCCeEEEEECCCCc--EEEeccCCCccCCCCcceEEEEEeCCEEEEEcCcCCCCCceEEEEEeeCCCCC
Q 012755 353 VVNNQLYSADQATNVVKKYNKTNNS--WTVVKRLPVRANSFNGWGLAFKACGNSLLVIGGHRELQGEIIVLHSWDPTDGN 430 (457)
Q Consensus 353 ~~~g~ly~~gg~~~~v~~Yd~~~~~--W~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~~~~~~v~~y~~~~~~ 430 (457)
..++.+|+...... +..+|.+++. |+.. ..... ......++.||+.. ..+ .++++|+.+
T Consensus 171 ~~~~~v~~~~~~g~-~~~~d~~tg~~~w~~~--~~~~~-------~~~~~~~~~l~~~~-~~~------~l~~~d~~t-- 231 (238)
T PF13360_consen 171 ISDGRVYVSSGDGR-VVAVDLATGEKLWSKP--ISGIY-------SLPSVDGGTLYVTS-SDG------RLYALDLKT-- 231 (238)
T ss_dssp CCTTEEEEECCTSS-EEEEETTTTEEEEEEC--SS-EC-------ECEECCCTEEEEEE-TTT------EEEEEETTT--
T ss_pred EECCEEEEEcCCCe-EEEEECCCCCEEEEec--CCCcc-------CCceeeCCEEEEEe-CCC------EEEEEECCC--
Confidence 34688888865433 5666999986 8432 21111 11335678888877 332 699999999
Q ss_pred CCCCCeeE
Q 012755 431 SGEAQWNE 438 (457)
Q Consensus 431 w~~~~W~~ 438 (457)
++..|+.
T Consensus 232 -G~~~W~~ 238 (238)
T PF13360_consen 232 -GKVVWQQ 238 (238)
T ss_dssp -TEEEEEE
T ss_pred -CCEEeEC
Confidence 7778863
No 56
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.99 E-value=0.015 Score=58.18 Aligned_cols=230 Identities=15% Similarity=0.070 Sum_probs=128.9
Q ss_pred cccEEEEEecCccEEEEeCCCC--cEEeCCCCCCCccccCCCeeeEEeCCEEEEEceecCCcEEEEEECCCCc--EEeCC
Q 012755 159 VEHWVYLACILMPWEAFDPLRQ--RWMRLPRMQCDECFTSADKESLAVGTQLLVFGRELSGFAIWMYSLIANC--WSKCP 234 (457)
Q Consensus 159 ~~~~l~~~~~~~~~~~ydp~~~--~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~--W~~l~ 234 (457)
.++.+|+......+++||+.+. .|..-.. .. ... ..++.++.+|+.+. ...++.+|+.+++ |+.-.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~--~~--~~~---~p~v~~~~v~v~~~---~g~l~ald~~tG~~~W~~~~ 133 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLD--ER--LSG---GVGADGGLVFVGTE---KGEVIALDAEDGKELWRAKL 133 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCC--CC--ccc---ceEEcCCEEEEEcC---CCEEEEEECCCCcEeeeecc
Confidence 3677887766678999998766 4753221 11 011 13445777776442 2478999997764 86532
Q ss_pred CCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCc--EEECCCCCC--CCcceeEEEECCEEEEEeccCCCC
Q 012755 235 QMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGT--WETLPDMNL--PRKLCSGFFMDGKFYIIGGMSSPT 310 (457)
Q Consensus 235 ~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~--~r~~~~~~~~~g~iyv~GG~~~~~ 310 (457)
+ .. .....+..++++|+..+ ...+..+|+++++ |+.-...+. .+...+.++.++.+|+. ..
T Consensus 134 ~--~~-~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~-~~---- 198 (377)
T TIGR03300 134 S--SE-VLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVG-FA---- 198 (377)
T ss_pred C--ce-eecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEE-CC----
Confidence 1 11 11223445778777532 2468899998875 876432221 12233445667776653 21
Q ss_pred CCCceEEEEECCCC--ceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEECCCC--cEEEeccCCC
Q 012755 311 DPLTCGEEYNLETR--TWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQATNVVKKYNKTNN--SWTVVKRLPV 386 (457)
Q Consensus 311 ~~~~~~~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~~~~v~~Yd~~~~--~W~~v~~~p~ 386 (457)
...+..+|++++ .|+.-...+... .............++.++.+|+.. ..+.+++||++++ .|+.-. +.
T Consensus 199 --~g~v~ald~~tG~~~W~~~~~~~~g~--~~~~~~~~~~~~p~~~~~~vy~~~-~~g~l~a~d~~tG~~~W~~~~--~~ 271 (377)
T TIGR03300 199 --GGKLVALDLQTGQPLWEQRVALPKGR--TELERLVDVDGDPVVDGGQVYAVS-YQGRVAALDLRSGRVLWKRDA--SS 271 (377)
T ss_pred --CCEEEEEEccCCCEeeeeccccCCCC--CchhhhhccCCccEEECCEEEEEE-cCCEEEEEECCCCcEEEeecc--CC
Confidence 236788998876 476432211100 000000011223345688888865 4578999999876 476531 11
Q ss_pred ccCCCCcceEEEEEeCCEEEEEcCcCCCCCceEEEEEeeCCCCCCCCCCeeE
Q 012755 387 RANSFNGWGLAFKACGNSLLVIGGHRELQGEIIVLHSWDPTDGNSGEAQWNE 438 (457)
Q Consensus 387 ~~~~~~~~~~~~~~~~g~lyv~GG~~~~~~~~~~v~~y~~~~~~w~~~~W~~ 438 (457)
. ...+..+++||+.... ..++.+|+.+ ++..|+.
T Consensus 272 ------~--~~p~~~~~~vyv~~~~-------G~l~~~d~~t---G~~~W~~ 305 (377)
T TIGR03300 272 ------Y--QGPAVDDNRLYVTDAD-------GVVVALDRRS---GSELWKN 305 (377)
T ss_pred ------c--cCceEeCCEEEEECCC-------CeEEEEECCC---CcEEEcc
Confidence 1 1233568899987532 1588889877 5566764
No 57
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.89 E-value=0.023 Score=56.79 Aligned_cols=222 Identities=18% Similarity=0.153 Sum_probs=126.7
Q ss_pred cccEEEEEecCccEEEEeCCCC--cEEeCCCCCCCccccCCCeeeEEeCCEEEEEceecCCcEEEEEECCCCc--EEeCC
Q 012755 159 VEHWVYLACILMPWEAFDPLRQ--RWMRLPRMQCDECFTSADKESLAVGTQLLVFGRELSGFAIWMYSLIANC--WSKCP 234 (457)
Q Consensus 159 ~~~~l~~~~~~~~~~~ydp~~~--~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~--W~~l~ 234 (457)
.++.+|+......++++|+.+. .|..-.. .. .. . ..+..++.+|+..+ ...++.+|+.+++ |+.-.
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--~~-~~-~---~p~v~~~~v~v~~~---~g~l~a~d~~tG~~~W~~~~ 173 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS--SE-VL-S---PPLVANGLVVVRTN---DGRLTALDAATGERLWTYSR 173 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC--ce-ee-c---CCEEECCEEEEECC---CCeEEEEEcCCCceeeEEcc
Confidence 3677887666678999998765 5754321 11 01 1 12445777777543 3468999998764 76532
Q ss_pred CCCC--CccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCc--EEECCCCCCCC--------cceeEEEECCEEEE
Q 012755 235 QMNL--PRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGT--WETLPDMNLPR--------KLCSGFFMDGKFYI 302 (457)
Q Consensus 235 ~lp~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r--------~~~~~~~~~g~iyv 302 (457)
..+. .+...+.+..++.+|+ |.. ...+..+|+++++ |+.--..+... ...+.++.++.+|+
T Consensus 174 ~~~~~~~~~~~sp~~~~~~v~~-~~~------~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~ 246 (377)
T TIGR03300 174 VTPALTLRGSASPVIADGGVLV-GFA------GGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYA 246 (377)
T ss_pred CCCceeecCCCCCEEECCEEEE-ECC------CCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEE
Confidence 2111 1222233455666554 322 2368889998875 86532212111 12234566888998
Q ss_pred EeccCCCCCCCceEEEEECCCCc--eEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEECCCC--cE
Q 012755 303 IGGMSSPTDPLTCGEEYNLETRT--WKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQATNVVKKYNKTNN--SW 378 (457)
Q Consensus 303 ~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~~~~v~~Yd~~~~--~W 378 (457)
... ...+.+||+++++ |+.-. . . ....++.+++||+.. ..+.++++|..++ .|
T Consensus 247 ~~~-------~g~l~a~d~~tG~~~W~~~~---~----------~--~~~p~~~~~~vyv~~-~~G~l~~~d~~tG~~~W 303 (377)
T TIGR03300 247 VSY-------QGRVAALDLRSGRVLWKRDA---S----------S--YQGPAVDDNRLYVTD-ADGVVVALDRRSGSELW 303 (377)
T ss_pred EEc-------CCEEEEEECCCCcEEEeecc---C----------C--ccCceEeCCEEEEEC-CCCeEEEEECCCCcEEE
Confidence 642 2468899998764 75431 1 1 112345788998875 4578999999876 58
Q ss_pred EEeccCCCccCCCCcceEEEEEeCCEEEEEcCcCCCCCceEEEEEeeCCCCCCCCCCee
Q 012755 379 TVVKRLPVRANSFNGWGLAFKACGNSLLVIGGHRELQGEIIVLHSWDPTDGNSGEAQWN 437 (457)
Q Consensus 379 ~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~~~~~~v~~y~~~~~~w~~~~W~ 437 (457)
+.-. ++... . ...+..+++||+.. .++ .++++|+.+ ++..|+
T Consensus 304 ~~~~-~~~~~-----~-ssp~i~g~~l~~~~-~~G------~l~~~d~~t---G~~~~~ 345 (377)
T TIGR03300 304 KNDE-LKYRQ-----L-TAPAVVGGYLVVGD-FEG------YLHWLSRED---GSFVAR 345 (377)
T ss_pred cccc-ccCCc-----c-ccCEEECCEEEEEe-CCC------EEEEEECCC---CCEEEE
Confidence 6521 21111 1 11234578888743 332 588889877 566664
No 58
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.73 E-value=0.0005 Score=64.87 Aligned_cols=45 Identities=20% Similarity=0.418 Sum_probs=41.1
Q ss_pred CCCCCCCc----HHHHhhhceeccccccCcccccChhhhhhhccCcchh
Q 012755 107 DSFLPGLH----DDATLDILAWSSRSDYPTLSCLNRKFKSLIASGYLYK 151 (457)
Q Consensus 107 ~~~~~~LP----ddl~~~iLarlp~~~~~~l~~v~k~w~~li~s~~~~~ 151 (457)
...+..|| |+++++||+.|...+++....|||+|+++++.+.+++
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WK 120 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWK 120 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHH
Confidence 34567899 9999999999999999999999999999999998876
No 59
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=97.69 E-value=6.1e-06 Score=53.99 Aligned_cols=39 Identities=28% Similarity=0.356 Sum_probs=36.3
Q ss_pred CcHHHHhhhceeccccccCcccccChhhhhhhccCcchh
Q 012755 113 LHDDATLDILAWSSRSDYPTLSCLNRKFKSLIASGYLYK 151 (457)
Q Consensus 113 LPddl~~~iLarlp~~~~~~l~~v~k~w~~li~s~~~~~ 151 (457)
||+|++.+|+++++..++.+++.|||+|+.++..+.++.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999887654
No 60
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=97.65 E-value=2.9e-06 Score=57.84 Aligned_cols=42 Identities=31% Similarity=0.517 Sum_probs=35.4
Q ss_pred CCCCcHHHHhhhceeccccccCcccccChhhhhhhccCcchh
Q 012755 110 LPGLHDDATLDILAWSSRSDYPTLSCLNRKFKSLIASGYLYK 151 (457)
Q Consensus 110 ~~~LPddl~~~iLarlp~~~~~~l~~v~k~w~~li~s~~~~~ 151 (457)
|..||+|++.+|+.+++..++.+++.|||+|++++.+..++.
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~ 44 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWK 44 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccH
Confidence 457999999999999999999999999999999999876654
No 61
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.65 E-value=0.033 Score=51.51 Aligned_cols=182 Identities=16% Similarity=0.151 Sum_probs=110.6
Q ss_pred cccEEEEEecCccEEEEeCCCC--cEEeCCCCCCCccccCCCeeeEEeCCEEEEEceecCCcEEEEEECCCCc--EE-eC
Q 012755 159 VEHWVYLACILMPWEAFDPLRQ--RWMRLPRMQCDECFTSADKESLAVGTQLLVFGRELSGFAIWMYSLIANC--WS-KC 233 (457)
Q Consensus 159 ~~~~l~~~~~~~~~~~ydp~~~--~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~--W~-~l 233 (457)
.++.+|+......++++|+.+. .|..-. +.+. ... ....++.+|+... .+.++.+|..+++ |+ ..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~--~~~~--~~~---~~~~~~~v~v~~~---~~~l~~~d~~tG~~~W~~~~ 104 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL--PGPI--SGA---PVVDGGRVYVGTS---DGSLYALDAKTGKVLWSIYL 104 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC--SSCG--GSG---EEEETTEEEEEET---TSEEEEEETTTSCEEEEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec--cccc--cce---eeecccccccccc---eeeeEecccCCcceeeeecc
Confidence 4677888777889999998777 464432 2211 111 3667888888752 2379999988774 88 34
Q ss_pred CCCCCC--ccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCc--EEECCCCCCCCc--------ceeEEEECCEEE
Q 012755 234 PQMNLP--RCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGT--WETLPDMNLPRK--------LCSGFFMDGKFY 301 (457)
Q Consensus 234 ~~lp~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~--------~~~~~~~~g~iy 301 (457)
...+.. .......+.++.+|+... ...+..+|+++++ |+.-...+.... ....+..++.+|
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 177 (238)
T PF13360_consen 105 TSSPPAGVRSSSSPAVDGDRLYVGTS-------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVY 177 (238)
T ss_dssp -SSCTCSTB--SEEEEETTEEEEEET-------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEE
T ss_pred ccccccccccccCceEecCEEEEEec-------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEE
Confidence 322222 223334445777776643 3578999999887 877544433211 233344468888
Q ss_pred EEeccCCCCCCCceEEEEECCCCc--eEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEECCCCc--
Q 012755 302 IIGGMSSPTDPLTCGEEYNLETRT--WKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQATNVVKKYNKTNNS-- 377 (457)
Q Consensus 302 v~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~~~~v~~Yd~~~~~-- 377 (457)
+..+.. .+..+|..++. |+.. ... ........++.||+.. ..+.+.++|+++++
T Consensus 178 ~~~~~g-------~~~~~d~~tg~~~w~~~--~~~------------~~~~~~~~~~~l~~~~-~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 178 VSSGDG-------RVVAVDLATGEKLWSKP--ISG------------IYSLPSVDGGTLYVTS-SDGRLYALDLKTGKVV 235 (238)
T ss_dssp EECCTS-------SEEEEETTTTEEEEEEC--SS-------------ECECEECCCTEEEEEE-TTTEEEEEETTTTEEE
T ss_pred EEcCCC-------eEEEEECCCCCEEEEec--CCC------------ccCCceeeCCEEEEEe-CCCEEEEEECCCCCEE
Confidence 875432 14556999987 8433 211 1111445678888887 67899999999874
Q ss_pred EE
Q 012755 378 WT 379 (457)
Q Consensus 378 W~ 379 (457)
|+
T Consensus 236 W~ 237 (238)
T PF13360_consen 236 WQ 237 (238)
T ss_dssp EE
T ss_pred eE
Confidence 65
No 62
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.54 E-value=0.014 Score=57.62 Aligned_cols=120 Identities=15% Similarity=0.240 Sum_probs=81.8
Q ss_pred eCCEEEEEceecCCcEEEEEECCCCcEEeCCCCCCCccceeEEeeCCEEEEEeeecCCCCc------cceEEEEeC----
Q 012755 204 VGTQLLVFGRELSGFAIWMYSLIANCWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCI------LKSAELYNS---- 273 (457)
Q Consensus 204 ~~~~lyv~GG~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~------~~~v~~yd~---- 273 (457)
.+++|+.++.. ....+||..|..-...|.|+.+.....++.++++||++......... ...+..|++
T Consensus 75 ~gskIv~~d~~---~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~ 151 (342)
T PF07893_consen 75 HGSKIVAVDQS---GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDD 151 (342)
T ss_pred cCCeEEEEcCC---CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEecccccccc
Confidence 48888888654 34799999999999889988877777777889999999876422111 222333442
Q ss_pred ----CCCcEEECCCCCCCCc-------ceeEEEE-CCEEEEE-eccCCCCCCCceEEEEECCCCceEEcCCC
Q 012755 274 ----ELGTWETLPDMNLPRK-------LCSGFFM-DGKFYII-GGMSSPTDPLTCGEEYNLETRTWKRIENM 332 (457)
Q Consensus 274 ----~t~~W~~~~~~p~~r~-------~~~~~~~-~g~iyv~-GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 332 (457)
.+-.|+.+|++|..+. -.+-+++ +..|+|- .+.. ...+.||+++.+|++..+-
T Consensus 152 ~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------~GTysfDt~~~~W~~~GdW 217 (342)
T PF07893_consen 152 PSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------WGTYSFDTESHEWRKHGDW 217 (342)
T ss_pred ccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc------eEEEEEEcCCcceeeccce
Confidence 2225888887765443 2344566 6678883 2211 2468899999999999764
No 63
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.34 E-value=0.0085 Score=59.06 Aligned_cols=126 Identities=13% Similarity=0.196 Sum_probs=79.8
Q ss_pred eCCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCcceeEEEECCEEEEEeccCCCCCCC----ceEEEE--E-
Q 012755 248 LGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFMDGKFYIIGGMSSPTDPL----TCGEEY--N- 320 (457)
Q Consensus 248 ~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~iyv~GG~~~~~~~~----~~~~~y--d- 320 (457)
.+.+|+.++.. ..+.+||..|..=...|.++.+.....++.++++||++.......... ..++++ +
T Consensus 75 ~gskIv~~d~~-------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~ 147 (342)
T PF07893_consen 75 HGSKIVAVDQS-------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRP 147 (342)
T ss_pred cCCeEEEEcCC-------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEecccc
Confidence 58899888543 458899999999998888887777777778899999998764332110 144544 4
Q ss_pred -------CCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEE-CCEEEE-EecCCCeEEEEECCCCcEEEecc
Q 012755 321 -------LETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVV-NNQLYS-ADQATNVVKKYNKTNNSWTVVKR 383 (457)
Q Consensus 321 -------~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~g~ly~-~gg~~~~v~~Yd~~~~~W~~v~~ 383 (457)
...-.|+.+++.|. ........+...+.+++ +..|++ +.+.....+.||.++.+|+++..
T Consensus 148 ~~~~~~~~~~w~W~~LP~PPf---~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 148 PPDDPSPEESWSWRSLPPPPF---VRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKHGD 216 (342)
T ss_pred ccccccCCCcceEEcCCCCCc---cccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeeccc
Confidence 22335777765332 11111101113344555 556777 33322369999999999999973
No 64
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.22 E-value=0.033 Score=52.09 Aligned_cols=188 Identities=14% Similarity=0.097 Sum_probs=104.5
Q ss_pred CCEEEEEceecCCcEEEEEECCCCcEEeCCCCCCCccceeEEee--CCEEEEEeeecCCCCccceEEEEeCCCCcEEECC
Q 012755 205 GTQLLVFGRELSGFAIWMYSLIANCWSKCPQMNLPRCLFGSSSL--GEVAIVAGGTDKNGCILKSAELYNSELGTWETLP 282 (457)
Q Consensus 205 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 282 (457)
++.||+.. .....++.+|+.+++-..+.. +. ..+++.. ++.+|+... ....++|+.+++++.+.
T Consensus 11 ~g~l~~~D--~~~~~i~~~~~~~~~~~~~~~-~~---~~G~~~~~~~g~l~v~~~--------~~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 11 DGRLYWVD--IPGGRIYRVDPDTGEVEVIDL-PG---PNGMAFDRPDGRLYVADS--------GGIAVVDPDTGKVTVLA 76 (246)
T ss_dssp TTEEEEEE--TTTTEEEEEETTTTEEEEEES-SS---EEEEEEECTTSEEEEEET--------TCEEEEETTTTEEEEEE
T ss_pred CCEEEEEE--cCCCEEEEEECCCCeEEEEec-CC---CceEEEEccCCEEEEEEc--------CceEEEecCCCcEEEEe
Confidence 56677653 334579999999987655322 11 2333333 788888743 33466799999998876
Q ss_pred CCC-----CCCcceeEEEECCEEEEEeccCCCCCCC--ceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEE-
Q 012755 283 DMN-----LPRKLCSGFFMDGKFYIIGGMSSPTDPL--TCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVV- 354 (457)
Q Consensus 283 ~~p-----~~r~~~~~~~~~g~iyv~GG~~~~~~~~--~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~- 354 (457)
..+ ..+.+-.++.-+|.+|+..-........ ..++++++. ++.+.+..-.. ..-+++.-
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~------------~pNGi~~s~ 143 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLG------------FPNGIAFSP 143 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEES------------SEEEEEEET
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcc------------cccceEECC
Confidence 542 1222333334478899864222111111 578999998 66555542111 11234443
Q ss_pred CC-EEEEEecCCCeEEEEECCCC--cEEE---eccCCCccCCCCcceEEEEEeCCEEEEEcCcCCCCCceEEEEEeeCCC
Q 012755 355 NN-QLYSADQATNVVKKYNKTNN--SWTV---VKRLPVRANSFNGWGLAFKACGNSLLVIGGHRELQGEIIVLHSWDPTD 428 (457)
Q Consensus 355 ~g-~ly~~gg~~~~v~~Yd~~~~--~W~~---v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~~~~~~v~~y~~~~ 428 (457)
++ .||+.....+.|+.||+... ++.. +..++...... -|++ +.-+|+|||..-.. ..|.+|+|+-
T Consensus 144 dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~p--DG~~-vD~~G~l~va~~~~------~~I~~~~p~G 214 (246)
T PF08450_consen 144 DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYP--DGLA-VDSDGNLWVADWGG------GRIVVFDPDG 214 (246)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEE--EEEE-EBTTS-EEEEEETT------TEEEEEETTS
T ss_pred cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCC--Ccce-EcCCCCEEEEEcCC------CEEEEECCCc
Confidence 34 68888888889999998643 3432 22233221000 1222 23478999973211 1589999984
No 65
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.79 E-value=0.18 Score=48.02 Aligned_cols=121 Identities=14% Similarity=0.298 Sum_probs=71.4
Q ss_pred EEEEeeecCCCC-ccceEEEEeCCCCcEEECCCCCCCCcceeEEEE-CCEEEEEeccCCCCCCCceEEEEECCCCceEEc
Q 012755 252 AIVAGGTDKNGC-ILKSAELYNSELGTWETLPDMNLPRKLCSGFFM-DGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRI 329 (457)
Q Consensus 252 iyv~GG~~~~~~-~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 329 (457)
|||-|-+...+. .-..+-.||..+.+|..+..--... -.++... ++++|+.|-....+.....+..||.++.+|+.+
T Consensus 1 v~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~ 79 (281)
T PF12768_consen 1 VYVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNGISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSL 79 (281)
T ss_pred CEEeeecCCCCCcCCCEEEEEECCCCEeecCCCCceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeec
Confidence 355555554432 3567888999999999886431111 1223333 778888776554443456788999999999988
Q ss_pred CCCC-CCCCCCCCCCCCCCCCEEEEE---CCEEEEEecC-C--CeEEEEECCCCcEEEecc
Q 012755 330 ENMY-PSNVGTQSNPAMSSPPLVAVV---NNQLYSADQA-T--NVVKKYNKTNNSWTVVKR 383 (457)
Q Consensus 330 ~~~~-~~~~~~~~~~~~r~~~~~~~~---~g~ly~~gg~-~--~~v~~Yd~~~~~W~~v~~ 383 (457)
.... . ..+.+. ....+. .+.+++.|.. . ..+..| +..+|+.+..
T Consensus 80 ~~~~s~------~ipgpv--~a~~~~~~d~~~~~~aG~~~~g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 80 GGGSSN------SIPGPV--TALTFISNDGSNFWVAGRSANGSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred CCcccc------cCCCcE--EEEEeeccCCceEEEeceecCCCceEEEE--cCCceEeccc
Confidence 7632 1 000011 112221 3367777652 2 245566 6678999875
No 66
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.68 E-value=0.33 Score=45.32 Aligned_cols=193 Identities=12% Similarity=0.065 Sum_probs=105.6
Q ss_pred ccEEEEEe-cCccEEEEeCCCCcEEeCCCCCCCccccCCCeeeEE--eCCEEEEEceecCCcEEEEEECCCCcEEeCCCC
Q 012755 160 EHWVYLAC-ILMPWEAFDPLRQRWMRLPRMQCDECFTSADKESLA--VGTQLLVFGRELSGFAIWMYSLIANCWSKCPQM 236 (457)
Q Consensus 160 ~~~l~~~~-~~~~~~~ydp~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~lyv~GG~~~~~~v~~yd~~t~~W~~l~~l 236 (457)
++.||+.. ....++.+|+.+..-..+. .+.+. .++. .++.+|+... ....++|+.+++++.+...
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~-~~~~~-------G~~~~~~~g~l~v~~~----~~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEVID-LPGPN-------GMAFDRPDGRLYVADS----GGIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEE-SSSEE-------EEEEECTTSEEEEEET----TCEEEEETTTTEEEEEEEE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEEEe-cCCCc-------eEEEEccCCEEEEEEc----CceEEEecCCCcEEEEeec
Confidence 44566554 3567889999887654332 22211 1222 3678887653 2356669999999887554
Q ss_pred C-----CCccceeEEeeCCEEEEEeeecCCCCcc--ceEEEEeCCCCcEEECC-CCCCCCcceeEEEE-CC-EEEEEecc
Q 012755 237 N-----LPRCLFGSSSLGEVAIVAGGTDKNGCIL--KSAELYNSELGTWETLP-DMNLPRKLCSGFFM-DG-KFYIIGGM 306 (457)
Q Consensus 237 p-----~~r~~~~~~~~~~~iyv~GG~~~~~~~~--~~v~~yd~~t~~W~~~~-~~p~~r~~~~~~~~-~g-~iyv~GG~ 306 (457)
+ ..+.+-.++.-++.+|+-.-........ ..++++++. ++.+.+. .+..+ .+.+.- ++ .+|+.--
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p---NGi~~s~dg~~lyv~ds- 153 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFP---NGIAFSPDGKTLYVADS- 153 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSE---EEEEEETTSSEEEEEET-
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccc---cceEECCcchheeeccc-
Confidence 2 2233333334477888864322111112 679999998 6655542 22211 223333 44 5887632
Q ss_pred CCCCCCCceEEEEECCCCc--eEEcC---CCCCCCCCCCCCCCCCC-CCEEEE-ECCEEEEEecCCCeEEEEECCCCcEE
Q 012755 307 SSPTDPLTCGEEYNLETRT--WKRIE---NMYPSNVGTQSNPAMSS-PPLVAV-VNNQLYSADQATNVVKKYNKTNNSWT 379 (457)
Q Consensus 307 ~~~~~~~~~~~~yd~~t~~--W~~~~---~~~~~~~~~~~~~~~r~-~~~~~~-~~g~ly~~gg~~~~v~~Yd~~~~~W~ 379 (457)
....+++||+.... +.... ..+. ... .-++++ -+|+||+.....+.|++||++...-.
T Consensus 154 -----~~~~i~~~~~~~~~~~~~~~~~~~~~~~----------~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~ 218 (246)
T PF08450_consen 154 -----FNGRIWRFDLDADGGELSNRRVFIDFPG----------GPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLR 218 (246)
T ss_dssp -----TTTEEEEEEEETTTCCEEEEEEEEE-SS----------SSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEE
T ss_pred -----ccceeEEEeccccccceeeeeeEEEcCC----------CCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEE
Confidence 34568889886433 43222 2222 111 223333 27899998767789999999976666
Q ss_pred EeccCC
Q 012755 380 VVKRLP 385 (457)
Q Consensus 380 ~v~~~p 385 (457)
.+. +|
T Consensus 219 ~i~-~p 223 (246)
T PF08450_consen 219 EIE-LP 223 (246)
T ss_dssp EEE--S
T ss_pred EEc-CC
Confidence 654 44
No 67
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.57 E-value=0.082 Score=49.39 Aligned_cols=186 Identities=12% Similarity=0.046 Sum_probs=109.1
Q ss_pred eCCEEEEEceecCCcEEEEEECCCCcEEeCCCCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEECCC
Q 012755 204 VGTQLLVFGRELSGFAIWMYSLIANCWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPD 283 (457)
Q Consensus 204 ~~~~lyv~GG~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 283 (457)
.++.+|..-|....+.+..+|+.|++=..-.++|..-.+-+++.++++||..-= ......+||+.+- +.+..
T Consensus 54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTW------k~~~~f~yd~~tl--~~~~~ 125 (264)
T PF05096_consen 54 DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTW------KEGTGFVYDPNTL--KKIGT 125 (264)
T ss_dssp ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEES------SSSEEEEEETTTT--EEEEE
T ss_pred CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEe------cCCeEEEEccccc--eEEEE
Confidence 578999887777778899999999987666667776677889999999999831 2467899999764 44434
Q ss_pred CCCCCcceeEEEECCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEec
Q 012755 284 MNLPRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQ 363 (457)
Q Consensus 284 ~p~~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg 363 (457)
.+.+..+-+.+.-+..+++..| ++.++..||++-+=...-.... .+.| -..---+-.++|.||+==-
T Consensus 126 ~~y~~EGWGLt~dg~~Li~SDG-------S~~L~~~dP~~f~~~~~i~V~~-----~g~p-v~~LNELE~i~G~IyANVW 192 (264)
T PF05096_consen 126 FPYPGEGWGLTSDGKRLIMSDG-------SSRLYFLDPETFKEVRTIQVTD-----NGRP-VSNLNELEYINGKIYANVW 192 (264)
T ss_dssp EE-SSS--EEEECSSCEEEE-S-------SSEEEEE-TTT-SEEEEEE-EE-----TTEE----EEEEEEETTEEEEEET
T ss_pred EecCCcceEEEcCCCEEEEECC-------ccceEEECCcccceEEEEEEEE-----CCEE-CCCcEeEEEEcCEEEEEeC
Confidence 4444456677766777777654 3567888988643221101100 0000 0111123456888887666
Q ss_pred CCCeEEEEECCCCc---EEEeccCCCc----cC----CCCcceEEEEEeCCEEEEEcC
Q 012755 364 ATNVVKKYNKTNNS---WTVVKRLPVR----AN----SFNGWGLAFKACGNSLLVIGG 410 (457)
Q Consensus 364 ~~~~v~~Yd~~~~~---W~~v~~~p~~----~~----~~~~~~~~~~~~~g~lyv~GG 410 (457)
..+.|.+-||+++. |-.+..+... .. ..---|.|...-.+++||.|=
T Consensus 193 ~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 193 QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 68899999999985 5555443211 00 011123433334678888774
No 68
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.52 E-value=1 Score=46.84 Aligned_cols=117 Identities=13% Similarity=0.135 Sum_probs=67.2
Q ss_pred EEeCCEEEEEceecCCcEEEEEECCCCc--EEeCCCCCC----Cc-cceeEEeeC-CEEEEEeeecCCCCccceEEEEeC
Q 012755 202 LAVGTQLLVFGRELSGFAIWMYSLIANC--WSKCPQMNL----PR-CLFGSSSLG-EVAIVAGGTDKNGCILKSAELYNS 273 (457)
Q Consensus 202 ~~~~~~lyv~GG~~~~~~v~~yd~~t~~--W~~l~~lp~----~r-~~~~~~~~~-~~iyv~GG~~~~~~~~~~v~~yd~ 273 (457)
++.++.+|+.... ..++.+|..|++ |+.-...+. +. .....+..+ ++||+... ...+..+|.
T Consensus 58 vv~~g~vy~~~~~---g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-------~g~v~AlD~ 127 (488)
T cd00216 58 LVVDGDMYFTTSH---SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-------DGRLVALDA 127 (488)
T ss_pred EEECCEEEEeCCC---CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-------CCeEEEEEC
Confidence 6778999986543 468889988764 876332220 10 111234446 78887432 257889999
Q ss_pred CCCc--EEECCCCCC-C--CcceeEEEECCEEEEEeccCCCC---CCCceEEEEECCCCc--eEEc
Q 012755 274 ELGT--WETLPDMNL-P--RKLCSGFFMDGKFYIIGGMSSPT---DPLTCGEEYNLETRT--WKRI 329 (457)
Q Consensus 274 ~t~~--W~~~~~~p~-~--r~~~~~~~~~g~iyv~GG~~~~~---~~~~~~~~yd~~t~~--W~~~ 329 (457)
+|++ |+.-...+. . ....+.++.++.+|+- ...... .....++++|.+|++ |+.-
T Consensus 128 ~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg-~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 128 ETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIG-SSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred CCCCEeeeecCCCCcCcceEecCCCEEECCEEEEe-ccccccccCCCCcEEEEEECCCCceeeEee
Confidence 8876 987533221 0 0123345667777763 221110 123578999998774 8753
No 69
>PRK04792 tolB translocation protein TolB; Provisional
Probab=96.49 E-value=1.2 Score=45.62 Aligned_cols=148 Identities=8% Similarity=-0.015 Sum_probs=82.6
Q ss_pred CCcEEEEEECCCCcEEeCCCCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCcceeEEE
Q 012755 216 SGFAIWMYSLIANCWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFF 295 (457)
Q Consensus 216 ~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~ 295 (457)
....++++|..+++-+.+...+..-.......-+.+|++....++ ...++++|..+++.+.+..-.... ......
T Consensus 240 g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~~~~~-~~p~wS 314 (448)
T PRK04792 240 RKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRHRAID-TEPSWH 314 (448)
T ss_pred CCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccCCCCc-cceEEC
Confidence 345799999998887776654432222222222445665543322 357999999999988875432111 111122
Q ss_pred ECCE-EEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECC-EEEEEecC--CCeEEEE
Q 012755 296 MDGK-FYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNN-QLYSADQA--TNVVKKY 371 (457)
Q Consensus 296 ~~g~-iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g-~ly~~gg~--~~~v~~Y 371 (457)
-+|+ |+......+ ...++.+|+.+++++++..... .... ....-+| .|++.... ...++.+
T Consensus 315 pDG~~I~f~s~~~g----~~~Iy~~dl~~g~~~~Lt~~g~----------~~~~-~~~SpDG~~l~~~~~~~g~~~I~~~ 379 (448)
T PRK04792 315 PDGKSLIFTSERGG----KPQIYRVNLASGKVSRLTFEGE----------QNLG-GSITPDGRSMIMVNRTNGKFNIARQ 379 (448)
T ss_pred CCCCEEEEEECCCC----CceEEEEECCCCCEEEEecCCC----------CCcC-eeECCCCCEEEEEEecCCceEEEEE
Confidence 3554 444432221 2478899999999988752211 1111 1223344 45544322 2368889
Q ss_pred ECCCCcEEEecc
Q 012755 372 NKTNNSWTVVKR 383 (457)
Q Consensus 372 d~~~~~W~~v~~ 383 (457)
|++++..+.+..
T Consensus 380 dl~~g~~~~lt~ 391 (448)
T PRK04792 380 DLETGAMQVLTS 391 (448)
T ss_pred ECCCCCeEEccC
Confidence 999988877653
No 70
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.40 E-value=1.5 Score=45.56 Aligned_cols=257 Identities=12% Similarity=0.083 Sum_probs=127.2
Q ss_pred cccEEEEEecCccEEEEeCCCC--cEEeCCCCCCCccccC-CCeeeEEeC-CEEEEEceecCCcEEEEEECCCCc--EEe
Q 012755 159 VEHWVYLACILMPWEAFDPLRQ--RWMRLPRMQCDECFTS-ADKESLAVG-TQLLVFGRELSGFAIWMYSLIANC--WSK 232 (457)
Q Consensus 159 ~~~~l~~~~~~~~~~~ydp~~~--~W~~l~~~p~~~~~~~-~~~~~~~~~-~~lyv~GG~~~~~~v~~yd~~t~~--W~~ 232 (457)
.++.+|+......++++|..+. .|..-...+....... ....++..+ +.||+... ...++.+|..|++ |+.
T Consensus 60 ~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~---~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 60 VDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF---DGRLVALDAETGKQVWKF 136 (488)
T ss_pred ECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC---CCeEEEEECCCCCEeeee
Confidence 3677888766678899998765 5865332221110000 011123445 77777432 3468899998764 876
Q ss_pred CCCCCC-Cc--cceeEEeeCCEEEEEeeecCCC---CccceEEEEeCCCCc--EEECCCCC---CCC-------------
Q 012755 233 CPQMNL-PR--CLFGSSSLGEVAIVAGGTDKNG---CILKSAELYNSELGT--WETLPDMN---LPR------------- 288 (457)
Q Consensus 233 l~~lp~-~r--~~~~~~~~~~~iyv~GG~~~~~---~~~~~v~~yd~~t~~--W~~~~~~p---~~r------------- 288 (457)
-...+. .. ...+.++.++.+|+ |..+... .....++.+|..|++ |+.-...+ ..+
T Consensus 137 ~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred cCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence 432211 00 11223455666665 4322110 123578999999876 87532111 000
Q ss_pred --cceeEEE--ECCEEEEEeccCC-----------CCCCCceEEEEECCCCc--eEEcCCCCCCCCCCCCCCCCCCCCEE
Q 012755 289 --KLCSGFF--MDGKFYIIGGMSS-----------PTDPLTCGEEYNLETRT--WKRIENMYPSNVGTQSNPAMSSPPLV 351 (457)
Q Consensus 289 --~~~~~~~--~~g~iyv~GG~~~-----------~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~r~~~~~ 351 (457)
...+.++ .++.+|+-.+... .....+.++++|.++++ |+.-...+.. ........+.+
T Consensus 216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~-----~~~~~~s~p~~ 290 (488)
T cd00216 216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDL-----WDYDGPNQPSL 290 (488)
T ss_pred CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCC-----cccccCCCCeE
Confidence 0112222 2577887543220 11123579999999874 8753221110 00001111122
Q ss_pred EE---ECCE---EEEEecCCCeEEEEECCCCc--EEEeccCCCccCCCCcceEEEEEeCCEEEEEcCcCC----------
Q 012755 352 AV---VNNQ---LYSADQATNVVKKYNKTNNS--WTVVKRLPVRANSFNGWGLAFKACGNSLLVIGGHRE---------- 413 (457)
Q Consensus 352 ~~---~~g~---ly~~gg~~~~v~~Yd~~~~~--W~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~---------- 413 (457)
.. .++. +.+++...+.++.+|.++++ |+.-.... + +....+.+|+-.....
T Consensus 291 ~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~---------~--~~~~~~~vyv~~~~~~~~~~~~~~~~ 359 (488)
T cd00216 291 ADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQ---------P--MAYDPGLVYLGAFHIPLGLPPQKKKR 359 (488)
T ss_pred EeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeecc---------c--cccCCceEEEccccccccCcccccCC
Confidence 21 2332 44455566789999998874 87532100 0 1112366666432110
Q ss_pred -CCCceEEEEEeeCCCCCCCCCCeeE
Q 012755 414 -LQGEIIVLHSWDPTDGNSGEAQWNE 438 (457)
Q Consensus 414 -~~~~~~~v~~y~~~~~~w~~~~W~~ 438 (457)
.......+..+|..+ |+..|+.
T Consensus 360 ~~~~~~G~l~AlD~~t---G~~~W~~ 382 (488)
T cd00216 360 CKKPGKGGLAALDPKT---GKVVWEK 382 (488)
T ss_pred CCCCCceEEEEEeCCC---CcEeeEe
Confidence 011224678888877 6677874
No 71
>PRK00178 tolB translocation protein TolB; Provisional
Probab=96.25 E-value=1.6 Score=44.38 Aligned_cols=193 Identities=9% Similarity=-0.028 Sum_probs=99.2
Q ss_pred CEEEEEceecCCcEEEEEECCCCcEEeCCCCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCC
Q 012755 206 TQLLVFGRELSGFAIWMYSLIANCWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMN 285 (457)
Q Consensus 206 ~~lyv~GG~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p 285 (457)
..|++..-......++++|..+++-+.+...+..-.......-+.+|++....++ ...++++|..++..+.+...+
T Consensus 211 ~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~ 286 (430)
T PRK00178 211 KRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTNHP 286 (430)
T ss_pred CEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEcccCC
Confidence 3454433222345799999999888777654321111111112345554432222 257999999999988775432
Q ss_pred CCCcceeEEEECC-EEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECC-EEEEEec
Q 012755 286 LPRKLCSGFFMDG-KFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNN-QLYSADQ 363 (457)
Q Consensus 286 ~~r~~~~~~~~~g-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g-~ly~~gg 363 (457)
..-.. ....-+| +|+......+ ...++.+|+.++.++++..... ........-+| .|++...
T Consensus 287 ~~~~~-~~~spDg~~i~f~s~~~g----~~~iy~~d~~~g~~~~lt~~~~-----------~~~~~~~Spdg~~i~~~~~ 350 (430)
T PRK00178 287 AIDTE-PFWGKDGRTLYFTSDRGG----KPQIYKVNVNGGRAERVTFVGN-----------YNARPRLSADGKTLVMVHR 350 (430)
T ss_pred CCcCC-eEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCCC-----------CccceEECCCCCEEEEEEc
Confidence 21111 1122244 4555432211 2468889999988887753211 11111222233 4444432
Q ss_pred C--CCeEEEEECCCCcEEEeccCCCccCCCCcceEEEEEeCCEEEEEcCcCCCCCceEEEEEeeCCC
Q 012755 364 A--TNVVKKYNKTNNSWTVVKRLPVRANSFNGWGLAFKACGNSLLVIGGHRELQGEIIVLHSWDPTD 428 (457)
Q Consensus 364 ~--~~~v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~~~~~~v~~y~~~~ 428 (457)
. ...++.+|..++..+.+....... ... ..-+|+.+++....+. ...++..+.+.
T Consensus 351 ~~~~~~l~~~dl~tg~~~~lt~~~~~~------~p~-~spdg~~i~~~~~~~g---~~~l~~~~~~g 407 (430)
T PRK00178 351 QDGNFHVAAQDLQRGSVRILTDTSLDE------SPS-VAPNGTMLIYATRQQG---RGVLMLVSING 407 (430)
T ss_pred cCCceEEEEEECCCCCEEEccCCCCCC------Cce-ECCCCCEEEEEEecCC---ceEEEEEECCC
Confidence 1 236899999999888876432111 111 2335555555433321 13566666654
No 72
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=96.17 E-value=0.52 Score=44.02 Aligned_cols=103 Identities=17% Similarity=0.091 Sum_probs=60.9
Q ss_pred EEEEeeecCCCCccceEEEEeCCCCc--------EE---ECCCCCCCCcceeEEEE--CCE--EEEEeccCCCC------
Q 012755 252 AIVAGGTDKNGCILKSAELYNSELGT--------WE---TLPDMNLPRKLCSGFFM--DGK--FYIIGGMSSPT------ 310 (457)
Q Consensus 252 iyv~GG~~~~~~~~~~v~~yd~~t~~--------W~---~~~~~p~~r~~~~~~~~--~g~--iyv~GG~~~~~------ 310 (457)
..+.||...+.....++++....+.. ++ .+.+.|.+|++|++-++ .|| ..+|||+.--.
T Consensus 41 YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTT 120 (337)
T PF03089_consen 41 YLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTT 120 (337)
T ss_pred EEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccch
Confidence 44558876554555666665443322 22 24788999999987655 343 55678864110
Q ss_pred -------CCCceEEEEECCCCceEE--cCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecC
Q 012755 311 -------DPLTCGEEYNLETRTWKR--IENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQA 364 (457)
Q Consensus 311 -------~~~~~~~~yd~~t~~W~~--~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~ 364 (457)
+....++..|++-+-.+. ++.+.. ..+.|.+.+-++.+|++||.
T Consensus 121 enWNsVvDC~P~VfLiDleFGC~tah~lpEl~d----------G~SFHvslar~D~VYilGGH 173 (337)
T PF03089_consen 121 ENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQD----------GQSFHVSLARNDCVYILGGH 173 (337)
T ss_pred hhcceeccCCCeEEEEeccccccccccchhhcC----------CeEEEEEEecCceEEEEccE
Confidence 122345556666655442 233333 55667777889999999983
No 73
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.02 E-value=0.15 Score=48.51 Aligned_cols=108 Identities=18% Similarity=0.225 Sum_probs=67.9
Q ss_pred cEEEEEECCCCcEEeCCCCCCCccceeEEee-CCEEEEEeeecCCCCccceEEEEeCCCCcEEECCC-----CCCCCcce
Q 012755 218 FAIWMYSLIANCWSKCPQMNLPRCLFGSSSL-GEVAIVAGGTDKNGCILKSAELYNSELGTWETLPD-----MNLPRKLC 291 (457)
Q Consensus 218 ~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~-----~p~~r~~~ 291 (457)
..+..||..+.+|..+..--.. .-..+... ++++|+.|-+...+.....+..||..+++|..++. +|.+....
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence 4689999999999987543111 11223333 77888888765444345778999999999998866 23332222
Q ss_pred eEEEEC-CEEEEEeccCCCCCCCceEEEEECCCCceEEcCC
Q 012755 292 SGFFMD-GKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIEN 331 (457)
Q Consensus 292 ~~~~~~-g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 331 (457)
.....+ ..+++.|.. .. -..-+..|| ..+|+.+..
T Consensus 95 ~~~~~d~~~~~~aG~~-~~--g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRS-AN--GSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred EeeccCCceEEEecee-cC--CCceEEEEc--CCceEeccc
Confidence 222223 457776655 22 234567774 568999876
No 74
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.97 E-value=0.17 Score=47.26 Aligned_cols=105 Identities=21% Similarity=0.333 Sum_probs=73.3
Q ss_pred ECCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEECCC
Q 012755 296 MDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQATNVVKKYNKTN 375 (457)
Q Consensus 296 ~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~~~~v~~Yd~~~ 375 (457)
.+|.+|.-.|.-+ .+.+..||+++++=....+++. .-.+-+++.++++||.+--..+...+||+++
T Consensus 54 ~~g~LyESTG~yG----~S~l~~~d~~tg~~~~~~~l~~----------~~FgEGit~~~d~l~qLTWk~~~~f~yd~~t 119 (264)
T PF05096_consen 54 DDGTLYESTGLYG----QSSLRKVDLETGKVLQSVPLPP----------RYFGEGITILGDKLYQLTWKEGTGFVYDPNT 119 (264)
T ss_dssp ETTEEEEEECSTT----EEEEEEEETTTSSEEEEEE-TT----------T--EEEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred CCCEEEEeCCCCC----cEEEEEEECCCCcEEEEEECCc----------cccceeEEEECCEEEEEEecCCeEEEEcccc
Confidence 5789998776543 3578899999998776666665 5566788999999999987788999999986
Q ss_pred CcEEEeccCCCccCCCCcceEEEEEeCCEEEEEcCcCCCCCceEEEEEeeCCC
Q 012755 376 NSWTVVKRLPVRANSFNGWGLAFKACGNSLLVIGGHRELQGEIIVLHSWDPTD 428 (457)
Q Consensus 376 ~~W~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~~~~~~v~~y~~~~ 428 (457)
.+.+...+.+.. +||.+ ..+..|++--|.+ .++.+||++
T Consensus 120 --l~~~~~~~y~~E---GWGLt--~dg~~Li~SDGS~-------~L~~~dP~~ 158 (264)
T PF05096_consen 120 --LKKIGTFPYPGE---GWGLT--SDGKRLIMSDGSS-------RLYFLDPET 158 (264)
T ss_dssp --TEEEEEEE-SSS-----EEE--ECSSCEEEE-SSS-------EEEEE-TTT
T ss_pred --ceEEEEEecCCc---ceEEE--cCCCEEEEECCcc-------ceEEECCcc
Confidence 566665554433 77754 6677888877754 577778765
No 75
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.58 E-value=4.6 Score=44.21 Aligned_cols=155 Identities=11% Similarity=0.074 Sum_probs=80.2
Q ss_pred cccEEEEEecCccEEEEeCCCC--cEEeCCCCCCCc--cccCCCee-----------------eEEeCCEEEEEceecCC
Q 012755 159 VEHWVYLACILMPWEAFDPLRQ--RWMRLPRMQCDE--CFTSADKE-----------------SLAVGTQLLVFGRELSG 217 (457)
Q Consensus 159 ~~~~l~~~~~~~~~~~ydp~~~--~W~~l~~~p~~~--~~~~~~~~-----------------~~~~~~~lyv~GG~~~~ 217 (457)
.++.+|++...+.++++|+.+. .|+.-+..+... ....+... ....++.||+... .
T Consensus 193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~---D 269 (764)
T TIGR03074 193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTS---D 269 (764)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecC---C
Confidence 3788999887888999999866 687655443211 00000000 0122345655321 2
Q ss_pred cEEEEEECCCCc--EE----------e-CCCCCCCcc--ceeEEeeCCEEEEEeeecCC----CCccceEEEEeCCCCc-
Q 012755 218 FAIWMYSLIANC--WS----------K-CPQMNLPRC--LFGSSSLGEVAIVAGGTDKN----GCILKSAELYNSELGT- 277 (457)
Q Consensus 218 ~~v~~yd~~t~~--W~----------~-l~~lp~~r~--~~~~~~~~~~iyv~GG~~~~----~~~~~~v~~yd~~t~~- 277 (457)
..++.+|..|++ |. . +++.+.... ..+-++.++.||+ |+...+ ......+..||.+|++
T Consensus 270 g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIv-G~~v~d~~~~~~~~G~I~A~Da~TGkl 348 (764)
T TIGR03074 270 ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVI-GGRVADNYSTDEPSGVIRAFDVNTGAL 348 (764)
T ss_pred CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEE-EecccccccccCCCcEEEEEECCCCcE
Confidence 245666666554 42 1 222222211 1223556787776 543211 1234678899999997
Q ss_pred -EEECCCCCCCCcceeEEEECCEEEEEeccCCCCCCCceEEEEECCCCce
Q 012755 278 -WETLPDMNLPRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTW 326 (457)
Q Consensus 278 -W~~~~~~p~~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W 326 (457)
|+.-..-|... ....+|..|..||-+ ......||++++.-
T Consensus 349 ~W~~~~g~p~~~----~~~~~g~~~~~gg~n-----~W~~~s~D~~~glv 389 (764)
T TIGR03074 349 VWAWDPGNPDPT----APPAPGETYTRNTPN-----SWSVASYDEKLGLV 389 (764)
T ss_pred eeEEecCCCCcc----cCCCCCCEeccCCCC-----ccCceEEcCCCCeE
Confidence 87543222211 111256777765432 22346799988763
No 76
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=95.54 E-value=3.1 Score=41.96 Aligned_cols=146 Identities=10% Similarity=-0.067 Sum_probs=80.0
Q ss_pred cEEEEEECCCCcEEeCCCCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCcceeEEEEC
Q 012755 218 FAIWMYSLIANCWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFMD 297 (457)
Q Consensus 218 ~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~ 297 (457)
..++++|..+++-..+...+..........-+..|++....++ ...++.+|..++..+.+.......... ...-+
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~~~~~~~~~~-~~s~d 288 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLTNGPGIDTEP-SWSPD 288 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCC----CccEEEEECCCCCEEECCCCCCCCCCE-EECCC
Confidence 5799999998877666544322222222122345665533222 257899999998887775432211111 11224
Q ss_pred CE-EEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecCC---CeEEEEEC
Q 012755 298 GK-FYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQAT---NVVKKYNK 373 (457)
Q Consensus 298 g~-iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~~---~~v~~Yd~ 373 (457)
|+ |+......+ ...++.+|..+..+..+..... ... .....-+|+.+++.... ..++.||+
T Consensus 289 g~~l~~~s~~~g----~~~iy~~d~~~~~~~~l~~~~~----------~~~-~~~~spdg~~i~~~~~~~~~~~i~~~d~ 353 (417)
T TIGR02800 289 GKSIAFTSDRGG----SPQIYMMDADGGEVRRLTFRGG----------YNA-SPSWSPDGDLIAFVHREGGGFNIAVMDL 353 (417)
T ss_pred CCEEEEEECCCC----CceEEEEECCCCCEEEeecCCC----------Ccc-CeEECCCCCEEEEEEccCCceEEEEEeC
Confidence 54 444332221 2368889999888877653221 111 11223356555554332 37999999
Q ss_pred CCCcEEEecc
Q 012755 374 TNNSWTVVKR 383 (457)
Q Consensus 374 ~~~~W~~v~~ 383 (457)
.++.++.+..
T Consensus 354 ~~~~~~~l~~ 363 (417)
T TIGR02800 354 DGGGERVLTD 363 (417)
T ss_pred CCCCeEEccC
Confidence 9887776653
No 77
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.50 E-value=2.3 Score=44.62 Aligned_cols=114 Identities=14% Similarity=0.197 Sum_probs=68.7
Q ss_pred EEeeCCEEEEEeeecCCCCccceEEEEeCCCCc--EEECCCCCCCC--------cceeEEEECCEEEEEeccCCCCCCCc
Q 012755 245 SSSLGEVAIVAGGTDKNGCILKSAELYNSELGT--WETLPDMNLPR--------KLCSGFFMDGKFYIIGGMSSPTDPLT 314 (457)
Q Consensus 245 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r--------~~~~~~~~~g~iyv~GG~~~~~~~~~ 314 (457)
-++.++.||+... ...++.+|.+|++ |+.-...+... ...+.++.+++||+.. ...
T Consensus 65 Pvv~~g~vyv~s~-------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t-------~dg 130 (527)
T TIGR03075 65 PLVVDGVMYVTTS-------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT-------LDA 130 (527)
T ss_pred CEEECCEEEEECC-------CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc-------CCC
Confidence 3566899998643 2468899999876 98654332111 1223466788998742 234
Q ss_pred eEEEEECCCCc--eEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEec-----CCCeEEEEECCCC--cEEE
Q 012755 315 CGEEYNLETRT--WKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQ-----ATNVVKKYNKTNN--SWTV 380 (457)
Q Consensus 315 ~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg-----~~~~v~~Yd~~~~--~W~~ 380 (457)
.+.++|.+|++ |+.-..-.. .......+.++.+++||+-.. ..+.|..||.+++ .|+.
T Consensus 131 ~l~ALDa~TGk~~W~~~~~~~~--------~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 131 RLVALDAKTGKVVWSKKNGDYK--------AGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred EEEEEECCCCCEEeeccccccc--------ccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 68999998875 764321111 001112234556888877532 2468999999887 4764
No 78
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.43 E-value=1.7 Score=40.74 Aligned_cols=187 Identities=11% Similarity=0.075 Sum_probs=101.8
Q ss_pred ccEEEEeCCCCcEEeCCCCCCCccccCCCeeeEEeCCEEEEEceecCCcEEEEEECCCCcEEeCCCCCCCccceeEE-ee
Q 012755 170 MPWEAFDPLRQRWMRLPRMQCDECFTSADKESLAVGTQLLVFGRELSGFAIWMYSLIANCWSKCPQMNLPRCLFGSS-SL 248 (457)
Q Consensus 170 ~~~~~ydp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~-~~ 248 (457)
+.+..+|+++-.-++.+ +|..+........++--.|.++..|.... -=+.||.++.-+..+.. ..-.-.+++ .-
T Consensus 124 ~aI~R~dpkt~evt~f~-lp~~~a~~nlet~vfD~~G~lWFt~q~G~---yGrLdPa~~~i~vfpaP-qG~gpyGi~atp 198 (353)
T COG4257 124 LAIGRLDPKTLEVTRFP-LPLEHADANLETAVFDPWGNLWFTGQIGA---YGRLDPARNVISVFPAP-QGGGPYGICATP 198 (353)
T ss_pred ceeEEecCcccceEEee-cccccCCCcccceeeCCCccEEEeecccc---ceecCcccCceeeeccC-CCCCCcceEECC
Confidence 35667777666554443 33333333322223333567776663211 12567766655544332 222223343 34
Q ss_pred CCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCccee--EEEECCEEEEEeccCCCCCCCceEEEEECCCCce
Q 012755 249 GEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCS--GFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTW 326 (457)
Q Consensus 249 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~--~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W 326 (457)
++.+|+..-. -+-+-..|+.+..=+.++.+........ .+--.|++++. + .....+++|||.+..|
T Consensus 199 dGsvwyasla------gnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wit---t---wg~g~l~rfdPs~~sW 266 (353)
T COG4257 199 DGSVWYASLA------GNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWIT---T---WGTGSLHRFDPSVTSW 266 (353)
T ss_pred CCcEEEEecc------ccceEEcccccCCcceecCCCcccccccccccCccCcEEEe---c---cCCceeeEeCcccccc
Confidence 7888886321 2446667887775454433221111111 11224666664 1 1234678999999999
Q ss_pred EEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEECCCCcEEEec
Q 012755 327 KRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQATNVVKKYNKTNNSWTVVK 382 (457)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~~~~v~~Yd~~~~~W~~v~ 382 (457)
.+-+- |. ..+|....-|--.|++++-.-..+.+..||+++.+.+.++
T Consensus 267 ~eypL-Pg--------s~arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~p 313 (353)
T COG4257 267 IEYPL-PG--------SKARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLP 313 (353)
T ss_pred eeeeC-CC--------CCCCcceeeeccCCcEEeeccccCceeecCcccceEEEec
Confidence 98742 22 1134333334446788887777889999999999988764
No 79
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.31 E-value=4.5 Score=42.44 Aligned_cols=117 Identities=13% Similarity=0.125 Sum_probs=69.8
Q ss_pred EEeCCEEEEEceecCCcEEEEEECCCCc--EEeCCCCCCC--------ccceeEEeeCCEEEEEeeecCCCCccceEEEE
Q 012755 202 LAVGTQLLVFGRELSGFAIWMYSLIANC--WSKCPQMNLP--------RCLFGSSSLGEVAIVAGGTDKNGCILKSAELY 271 (457)
Q Consensus 202 ~~~~~~lyv~GG~~~~~~v~~yd~~t~~--W~~l~~lp~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~y 271 (457)
++.++.||+.... ..++.+|..|++ |+.-...+.. ....+.+..+++||+... ...+..+
T Consensus 66 vv~~g~vyv~s~~---g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-------dg~l~AL 135 (527)
T TIGR03075 66 LVVDGVMYVTTSY---SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-------DARLVAL 135 (527)
T ss_pred EEECCEEEEECCC---CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-------CCEEEEE
Confidence 6678999986532 358888888764 8754332211 111234566888887421 2468999
Q ss_pred eCCCCc--EEECC-CCCCC-CcceeEEEECCEEEEEeccCCCCCCCceEEEEECCCCc--eEEc
Q 012755 272 NSELGT--WETLP-DMNLP-RKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRT--WKRI 329 (457)
Q Consensus 272 d~~t~~--W~~~~-~~p~~-r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~ 329 (457)
|.+|++ |+.-. ..... ....+.++.+++||+-..... ......+..||.+|++ |+.-
T Consensus 136 Da~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~-~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 136 DAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGE-FGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred ECCCCCEEeecccccccccccccCCcEEECCEEEEeecccc-cCCCcEEEEEECCCCceeEecc
Confidence 999987 87642 22211 122344677898887532211 1134578999999875 7643
No 80
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.0049 Score=57.80 Aligned_cols=44 Identities=18% Similarity=0.295 Sum_probs=40.2
Q ss_pred CCCCCCcHHHHhhhceeccccccCcccccChhhhhhhccCcchh
Q 012755 108 SFLPGLHDDATLDILAWSSRSDYPTLSCLNRKFKSLIASGYLYK 151 (457)
Q Consensus 108 ~~~~~LPddl~~~iLarlp~~~~~~l~~v~k~w~~li~s~~~~~ 151 (457)
..|-+||||+++.|+++|+.+.+.++..|||||+++..+..++.
T Consensus 96 v~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~ 139 (419)
T KOG2120|consen 96 VSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQ 139 (419)
T ss_pred CCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccccee
Confidence 34678999999999999999999999999999999999887765
No 81
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=95.24 E-value=1.2 Score=46.53 Aligned_cols=47 Identities=19% Similarity=0.364 Sum_probs=41.0
Q ss_pred CCCCCCCCCCcHHHHhhhceeccccccCcccccChhhhhhhccCcch
Q 012755 104 ASDDSFLPGLHDDATLDILAWSSRSDYPTLSCLNRKFKSLIASGYLY 150 (457)
Q Consensus 104 ~~~~~~~~~LPddl~~~iLarlp~~~~~~l~~v~k~w~~li~s~~~~ 150 (457)
......+..||-++...||..|+.+.++.++.||+.|+.+..+....
T Consensus 102 ~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~ 148 (537)
T KOG0274|consen 102 LGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVW 148 (537)
T ss_pred ccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchh
Confidence 34556788999999999999999999999999999999999875543
No 82
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=95.24 E-value=0.46 Score=39.57 Aligned_cols=81 Identities=6% Similarity=0.070 Sum_probs=56.6
Q ss_pred EEECCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecCC------Ce
Q 012755 294 FFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQAT------NV 367 (457)
Q Consensus 294 ~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~~------~~ 367 (457)
+.+||.+|..+-. .......+.+||..+.+|+.+..+.. .........++.++|+|.++.... -+
T Consensus 2 icinGvly~~a~~--~~~~~~~IvsFDv~~E~f~~i~~P~~-------~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~ 72 (129)
T PF08268_consen 2 ICINGVLYWLAWS--EDSDNNVIVSFDVRSEKFRFIKLPED-------PYSSDCSSTLIEYKGKLALVSYNDQGEPDSID 72 (129)
T ss_pred EEECcEEEeEEEE--CCCCCcEEEEEEcCCceEEEEEeeee-------eccccCccEEEEeCCeEEEEEecCCCCcceEE
Confidence 4679999988765 12246789999999999998865311 122556677889999999985421 35
Q ss_pred EEEE-ECCCCcEEEecc
Q 012755 368 VKKY-NKTNNSWTVVKR 383 (457)
Q Consensus 368 v~~Y-d~~~~~W~~v~~ 383 (457)
+|+. |.+.++|.+...
T Consensus 73 iWvLeD~~k~~Wsk~~~ 89 (129)
T PF08268_consen 73 IWVLEDYEKQEWSKKHI 89 (129)
T ss_pred EEEeeccccceEEEEEE
Confidence 6776 455779997743
No 83
>PRK04922 tolB translocation protein TolB; Provisional
Probab=95.22 E-value=4.2 Score=41.52 Aligned_cols=193 Identities=10% Similarity=-0.038 Sum_probs=99.2
Q ss_pred CEEEEEceecCCcEEEEEECCCCcEEeCCCCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCC
Q 012755 206 TQLLVFGRELSGFAIWMYSLIANCWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMN 285 (457)
Q Consensus 206 ~~lyv~GG~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p 285 (457)
..|++..-......++++|..+++-+.+...+..-.......-+.+|++....++ ..+++++|+.++.-+.+..-.
T Consensus 216 ~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~~~ 291 (433)
T PRK04922 216 KKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTNHF 291 (433)
T ss_pred CEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECccCC
Confidence 3444443222345799999999888777654432211122222445655433222 257999999998877764322
Q ss_pred CCCcceeEEEECCE-EEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECC-EEEEEec
Q 012755 286 LPRKLCSGFFMDGK-FYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNN-QLYSADQ 363 (457)
Q Consensus 286 ~~r~~~~~~~~~g~-iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g-~ly~~gg 363 (457)
... ......-+|+ |+......+ ...++.+|..++..+.+..... .... ....-+| .|++...
T Consensus 292 ~~~-~~~~~spDG~~l~f~sd~~g----~~~iy~~dl~~g~~~~lt~~g~----------~~~~-~~~SpDG~~Ia~~~~ 355 (433)
T PRK04922 292 GID-TEPTWAPDGKSIYFTSDRGG----RPQIYRVAASGGSAERLTFQGN----------YNAR-ASVSPDGKKIAMVHG 355 (433)
T ss_pred CCc-cceEECCCCCEEEEEECCCC----CceEEEEECCCCCeEEeecCCC----------CccC-EEECCCCCEEEEEEC
Confidence 111 1112223554 444332221 2467888988888877753211 1111 1222344 4544433
Q ss_pred C--CCeEEEEECCCCcEEEeccCCCccCCCCcceEEEEEeCCEEEEEcCcCCCCCceEEEEEeeCCC
Q 012755 364 A--TNVVKKYNKTNNSWTVVKRLPVRANSFNGWGLAFKACGNSLLVIGGHRELQGEIIVLHSWDPTD 428 (457)
Q Consensus 364 ~--~~~v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~~~~~~v~~y~~~~ 428 (457)
. ...++.+|..++..+.+..-+... ... ..-+|+.+++....+. ...++.++.+.
T Consensus 356 ~~~~~~I~v~d~~~g~~~~Lt~~~~~~------~p~-~spdG~~i~~~s~~~g---~~~L~~~~~~g 412 (433)
T PRK04922 356 SGGQYRIAVMDLSTGSVRTLTPGSLDE------SPS-FAPNGSMVLYATREGG---RGVLAAVSTDG 412 (433)
T ss_pred CCCceeEEEEECCCCCeEECCCCCCCC------Cce-ECCCCCEEEEEEecCC---ceEEEEEECCC
Confidence 2 236899999998888765332111 111 2335655454433321 23677777754
No 84
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.08 E-value=1.1 Score=44.59 Aligned_cols=184 Identities=16% Similarity=0.112 Sum_probs=101.7
Q ss_pred CCEEEEEceecCCcEEEEEECCCCcEEeCCCCCCCcc---ceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEEC
Q 012755 205 GTQLLVFGRELSGFAIWMYSLIANCWSKCPQMNLPRC---LFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETL 281 (457)
Q Consensus 205 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~l~~lp~~r~---~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 281 (457)
...+.+.+|.+..-.++.-|-.+|. .+.++...++ ....+.-|....+++|. ..-++.||..+.+-+++
T Consensus 224 ~~plllvaG~d~~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r------rky~ysyDle~ak~~k~ 295 (514)
T KOG2055|consen 224 TAPLLLVAGLDGTLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR------RKYLYSYDLETAKVTKL 295 (514)
T ss_pred CCceEEEecCCCcEEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEeccc------ceEEEEeeccccccccc
Confidence 5567788888777778888888876 4443332221 11112224436666663 35689999999998888
Q ss_pred CCCCC--CCc-ceeEEEECCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEE
Q 012755 282 PDMNL--PRK-LCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQL 358 (457)
Q Consensus 282 ~~~p~--~r~-~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~l 358 (457)
.++.. .+. ..-.+..++.+.++.|..+ -+......|+.|-.--.+.. .... ....-+++.
T Consensus 296 ~~~~g~e~~~~e~FeVShd~~fia~~G~~G------~I~lLhakT~eli~s~KieG----------~v~~-~~fsSdsk~ 358 (514)
T KOG2055|consen 296 KPPYGVEEKSMERFEVSHDSNFIAIAGNNG------HIHLLHAKTKELITSFKIEG----------VVSD-FTFSSDSKE 358 (514)
T ss_pred cCCCCcccchhheeEecCCCCeEEEcccCc------eEEeehhhhhhhhheeeecc----------EEee-EEEecCCcE
Confidence 65432 111 1122445666667766433 35666777777753323222 1111 122235554
Q ss_pred EEEecCCCeEEEEECCCCc----EEEeccCCCccCCCCcceEEE-EEeCCEEEEEcCcCCCCCceEEEEEeeCCC
Q 012755 359 YSADQATNVVKKYNKTNNS----WTVVKRLPVRANSFNGWGLAF-KACGNSLLVIGGHRELQGEIIVLHSWDPTD 428 (457)
Q Consensus 359 y~~gg~~~~v~~Yd~~~~~----W~~v~~~p~~~~~~~~~~~~~-~~~~g~lyv~GG~~~~~~~~~~v~~y~~~~ 428 (457)
.++-+..+.||++|...+. |..-... +|..+ ...++.++..|-..| .|.+||-++
T Consensus 359 l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v---------~gts~~~S~ng~ylA~GS~~G------iVNIYd~~s 418 (514)
T KOG2055|consen 359 LLASGGTGEVYVWNLRQNSCLHRFVDDGSV---------HGTSLCISLNGSYLATGSDSG------IVNIYDGNS 418 (514)
T ss_pred EEEEcCCceEEEEecCCcceEEEEeecCcc---------ceeeeeecCCCceEEeccCcc------eEEEeccch
Confidence 4444456799999999873 3322211 12223 345777666664443 466666443
No 85
>PRK05137 tolB translocation protein TolB; Provisional
Probab=95.01 E-value=4.8 Score=41.07 Aligned_cols=199 Identities=11% Similarity=-0.043 Sum_probs=99.6
Q ss_pred eCC-EEEEEceecCCcEEEEEECCCCcEEeCCCCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEECC
Q 012755 204 VGT-QLLVFGRELSGFAIWMYSLIANCWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLP 282 (457)
Q Consensus 204 ~~~-~lyv~GG~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 282 (457)
.++ .|+..........++++|..+++.+.+...+..-.......-+.+|++....++ ...++++|..++.-+.+.
T Consensus 211 pDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt 286 (435)
T PRK05137 211 PNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLT 286 (435)
T ss_pred CCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCC----CceEEEEECCCCceEEcc
Confidence 344 444433223346899999999988877655433222222222445555433222 357899999998887775
Q ss_pred CCCCCCcceeEEEECCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECC-EEEEE
Q 012755 283 DMNLPRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNN-QLYSA 361 (457)
Q Consensus 283 ~~p~~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g-~ly~~ 361 (457)
.-+... ......-+|+-.++..... + ...++.+|..+...+.+..... ........-+| .|++.
T Consensus 287 ~~~~~~-~~~~~spDG~~i~f~s~~~-g--~~~Iy~~d~~g~~~~~lt~~~~-----------~~~~~~~SpdG~~ia~~ 351 (435)
T PRK05137 287 DSPAID-TSPSYSPDGSQIVFESDRS-G--SPQLYVMNADGSNPRRISFGGG-----------RYSTPVWSPRGDLIAFT 351 (435)
T ss_pred CCCCcc-CceeEcCCCCEEEEEECCC-C--CCeEEEEECCCCCeEEeecCCC-----------cccCeEECCCCCEEEEE
Confidence 433211 1112223554333332111 1 2468889988877777653211 11111222344 44443
Q ss_pred ec--CCCeEEEEECCCCcEEEeccCCCccCCCCcceEEEEEeCCE-EEEEcCcCCCCCceEEEEEeeCCCC
Q 012755 362 DQ--ATNVVKKYNKTNNSWTVVKRLPVRANSFNGWGLAFKACGNS-LLVIGGHRELQGEIIVLHSWDPTDG 429 (457)
Q Consensus 362 gg--~~~~v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~g~-lyv~GG~~~~~~~~~~v~~y~~~~~ 429 (457)
.. ....++.+|++++..+.+..-. .. ..... .-+|+ |+......+..+ ...++.++.+..
T Consensus 352 ~~~~~~~~i~~~d~~~~~~~~lt~~~-~~-----~~p~~-spDG~~i~~~~~~~~~~~-~~~L~~~dl~g~ 414 (435)
T PRK05137 352 KQGGGQFSIGVMKPDGSGERILTSGF-LV-----EGPTW-APNGRVIMFFRQTPGSGG-APKLYTVDLTGR 414 (435)
T ss_pred EcCCCceEEEEEECCCCceEeccCCC-CC-----CCCeE-CCCCCEEEEEEccCCCCC-cceEEEEECCCC
Confidence 32 2247889998877766654321 11 11222 22444 444443222111 136888887653
No 86
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=94.79 E-value=3.7 Score=38.67 Aligned_cols=138 Identities=16% Similarity=0.128 Sum_probs=68.4
Q ss_pred EEEEceecCCcEEEEEECCCCcEEeC-CCCCCCccceeEEe-e-CCEEEEEeeecCCCCccceEEEEeCCCCcEEE-CCC
Q 012755 208 LLVFGRELSGFAIWMYSLIANCWSKC-PQMNLPRCLFGSSS-L-GEVAIVAGGTDKNGCILKSAELYNSELGTWET-LPD 283 (457)
Q Consensus 208 lyv~GG~~~~~~v~~yd~~t~~W~~l-~~lp~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~ 283 (457)
+|+.++. ...+.+||+.+++-... .....++ +++. - +..+|+.++. ...+.+||..+++... ++.
T Consensus 3 ~~~s~~~--d~~v~~~d~~t~~~~~~~~~~~~~~---~l~~~~dg~~l~~~~~~------~~~v~~~d~~~~~~~~~~~~ 71 (300)
T TIGR03866 3 AYVSNEK--DNTISVIDTATLEVTRTFPVGQRPR---GITLSKDGKLLYVCASD------SDTIQVIDLATGEVIGTLPS 71 (300)
T ss_pred EEEEecC--CCEEEEEECCCCceEEEEECCCCCC---ceEECCCCCEEEEEECC------CCeEEEEECCCCcEEEeccC
Confidence 4555443 24788889887764332 1111122 2222 2 3456776642 2468889998887644 222
Q ss_pred CCCCCcceeEEE-ECC-EEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEE-EECCEEEE
Q 012755 284 MNLPRKLCSGFF-MDG-KFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVA-VVNNQLYS 360 (457)
Q Consensus 284 ~p~~r~~~~~~~-~~g-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~g~ly~ 360 (457)
...+ ...+. -++ .+|+.++. ...+..||+.+.+- +..... ......++ .-+|.+++
T Consensus 72 ~~~~---~~~~~~~~g~~l~~~~~~------~~~l~~~d~~~~~~--~~~~~~----------~~~~~~~~~~~dg~~l~ 130 (300)
T TIGR03866 72 GPDP---ELFALHPNGKILYIANED------DNLVTVIDIETRKV--LAEIPV----------GVEPEGMAVSPDGKIVV 130 (300)
T ss_pred CCCc---cEEEECCCCCEEEEEcCC------CCeEEEEECCCCeE--EeEeeC----------CCCcceEEECCCCCEEE
Confidence 1111 12222 234 46665432 23688899987542 221111 01111222 23677666
Q ss_pred EecCC-CeEEEEECCCCc
Q 012755 361 ADQAT-NVVKKYNKTNNS 377 (457)
Q Consensus 361 ~gg~~-~~v~~Yd~~~~~ 377 (457)
++... +.+..||.++..
T Consensus 131 ~~~~~~~~~~~~d~~~~~ 148 (300)
T TIGR03866 131 NTSETTNMAHFIDTKTYE 148 (300)
T ss_pred EEecCCCeEEEEeCCCCe
Confidence 65433 456778887653
No 87
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=94.56 E-value=0.24 Score=46.17 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=56.2
Q ss_pred CCCCCCCccceeEEee---C-CEEEEEeeecCC----C---------CccceEEEEeCCCCcEEE--CCCCCCCCcceeE
Q 012755 233 CPQMNLPRCLFGSSSL---G-EVAIVAGGTDKN----G---------CILKSAELYNSELGTWET--LPDMNLPRKLCSG 293 (457)
Q Consensus 233 l~~lp~~r~~~~~~~~---~-~~iyv~GG~~~~----~---------~~~~~v~~yd~~t~~W~~--~~~~p~~r~~~~~ 293 (457)
+.+.|.+|++|++.++ | .-..+|||..-- . .....++..|++-+.++. +|.+....+.|.+
T Consensus 81 vGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvs 160 (337)
T PF03089_consen 81 VGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVS 160 (337)
T ss_pred cCCCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEE
Confidence 3678999999998766 2 346677886311 0 234567788888887654 5777778888988
Q ss_pred EEECCEEEEEeccCC
Q 012755 294 FFMDGKFYIIGGMSS 308 (457)
Q Consensus 294 ~~~~g~iyv~GG~~~ 308 (457)
..-++.+|++||..-
T Consensus 161 lar~D~VYilGGHsl 175 (337)
T PF03089_consen 161 LARNDCVYILGGHSL 175 (337)
T ss_pred EecCceEEEEccEEc
Confidence 899999999999754
No 88
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=94.35 E-value=4 Score=37.26 Aligned_cols=142 Identities=11% Similarity=0.091 Sum_probs=65.7
Q ss_pred CEEEEEceecCCcEEEEEECCCCcEEe-CCCCCCCccceeEEeeC-CEEEEEeeecCCCCccceEEEEeCCCCcE-EECC
Q 012755 206 TQLLVFGRELSGFAIWMYSLIANCWSK-CPQMNLPRCLFGSSSLG-EVAIVAGGTDKNGCILKSAELYNSELGTW-ETLP 282 (457)
Q Consensus 206 ~~lyv~GG~~~~~~v~~yd~~t~~W~~-l~~lp~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~v~~yd~~t~~W-~~~~ 282 (457)
+.+++.++ ....+.+||..+.+-.. +.. ....-.++.... +.+++.|+.+ ..+.+||..+++- ..+.
T Consensus 105 ~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~~------~~i~i~d~~~~~~~~~~~ 174 (289)
T cd00200 105 GRILSSSS--RDKTIKVWDVETGKCLTTLRG--HTDWVNSVAFSPDGTFVASSSQD------GTIKLWDLRTGKCVATLT 174 (289)
T ss_pred CCEEEEec--CCCeEEEEECCCcEEEEEecc--CCCcEEEEEEcCcCCEEEEEcCC------CcEEEEEccccccceeEe
Confidence 45555554 23468889988554322 221 111112222233 3444443312 4678888875431 1111
Q ss_pred CCCCCCcceeEEEE-CCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEE-CCEEEE
Q 012755 283 DMNLPRKLCSGFFM-DGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVV-NNQLYS 360 (457)
Q Consensus 283 ~~p~~r~~~~~~~~-~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~g~ly~ 360 (457)
. .. ..-..+... +++.+++++. ...+..||..+.+-... ... .......+... ++.+++
T Consensus 175 ~-~~-~~i~~~~~~~~~~~l~~~~~------~~~i~i~d~~~~~~~~~--~~~---------~~~~i~~~~~~~~~~~~~ 235 (289)
T cd00200 175 G-HT-GEVNSVAFSPDGEKLLSSSS------DGTIKLWDLSTGKCLGT--LRG---------HENGVNSVAFSPDGYLLA 235 (289)
T ss_pred c-Cc-cccceEEECCCcCEEEEecC------CCcEEEEECCCCceecc--hhh---------cCCceEEEEEcCCCcEEE
Confidence 1 11 111122222 4434455443 23578899876443222 111 01111223333 356666
Q ss_pred EecCCCeEEEEECCCC
Q 012755 361 ADQATNVVKKYNKTNN 376 (457)
Q Consensus 361 ~gg~~~~v~~Yd~~~~ 376 (457)
.++..+.+..||..+.
T Consensus 236 ~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 236 SGSEDGTIRVWDLRTG 251 (289)
T ss_pred EEcCCCcEEEEEcCCc
Confidence 6655788999998763
No 89
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=94.20 E-value=5 Score=37.74 Aligned_cols=177 Identities=11% Similarity=-0.001 Sum_probs=83.6
Q ss_pred CccEEEEeCCCCcEEeCCCCCCCccccCCCeeeEEeCC-EEEEEceecCCcEEEEEECCCCcEEe-CCCCCCCccceeEE
Q 012755 169 LMPWEAFDPLRQRWMRLPRMQCDECFTSADKESLAVGT-QLLVFGRELSGFAIWMYSLIANCWSK-CPQMNLPRCLFGSS 246 (457)
Q Consensus 169 ~~~~~~ydp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~-~lyv~GG~~~~~~v~~yd~~t~~W~~-l~~lp~~r~~~~~~ 246 (457)
...+..||+.+.+-...-..... ... .....++ .+|+.++. ...+.+||..+++... ++....++ .....
T Consensus 10 d~~v~~~d~~t~~~~~~~~~~~~--~~~---l~~~~dg~~l~~~~~~--~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~ 81 (300)
T TIGR03866 10 DNTISVIDTATLEVTRTFPVGQR--PRG---ITLSKDGKLLYVCASD--SDTIQVIDLATGEVIGTLPSGPDPE-LFALH 81 (300)
T ss_pred CCEEEEEECCCCceEEEEECCCC--CCc---eEECCCCCEEEEEECC--CCeEEEEECCCCcEEEeccCCCCcc-EEEEC
Confidence 55677888876643221111110 011 1122333 56666542 3568899998887654 33212221 11111
Q ss_pred eeCCEEEEEeeecCCCCccceEEEEeCCCCcE-EECCCCCCCCcceeEE-EECCEEEEEeccCCCCCCCceEEEEECCCC
Q 012755 247 SLGEVAIVAGGTDKNGCILKSAELYNSELGTW-ETLPDMNLPRKLCSGF-FMDGKFYIIGGMSSPTDPLTCGEEYNLETR 324 (457)
Q Consensus 247 ~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~~p~~r~~~~~~-~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~ 324 (457)
.-++.+|+.++. ...+.+||+.+.+- ..++ .......++ .-+|++++++..+ ...+..||..+.
T Consensus 82 ~~g~~l~~~~~~------~~~l~~~d~~~~~~~~~~~---~~~~~~~~~~~~dg~~l~~~~~~-----~~~~~~~d~~~~ 147 (300)
T TIGR03866 82 PNGKILYIANED------DNLVTVIDIETRKVLAEIP---VGVEPEGMAVSPDGKIVVNTSET-----TNMAHFIDTKTY 147 (300)
T ss_pred CCCCEEEEEcCC------CCeEEEEECCCCeEEeEee---CCCCcceEEECCCCCEEEEEecC-----CCeEEEEeCCCC
Confidence 124456665432 24688899987642 2221 111112222 2367776665432 124566787765
Q ss_pred ceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEe-cCCCeEEEEECCCCcE
Q 012755 325 TWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSAD-QATNVVKKYNKTNNSW 378 (457)
Q Consensus 325 ~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~g-g~~~~v~~Yd~~~~~W 378 (457)
+-... ... + .+.......-+++.++++ ...+.+..||.++.+.
T Consensus 148 ~~~~~--~~~-----~----~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 148 EIVDN--VLV-----D----QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV 191 (300)
T ss_pred eEEEE--EEc-----C----CCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence 43221 111 0 111112223355544444 3467899999987643
No 90
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.10 E-value=5.4 Score=37.80 Aligned_cols=147 Identities=13% Similarity=0.038 Sum_probs=84.2
Q ss_pred cEEEEEECCCCc----EEeCCCCCCCccceeE----EeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCc
Q 012755 218 FAIWMYSLIANC----WSKCPQMNLPRCLFGS----SSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRK 289 (457)
Q Consensus 218 ~~v~~yd~~t~~----W~~l~~lp~~r~~~~~----~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~ 289 (457)
+.+..||...++ |++--.-+....+-.. --+++.+++.-+- +....-++..|.+++.=+.+..-|...
T Consensus 78 SHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~D---Gh~nLGvy~ldr~~g~~~~L~~~ps~K- 153 (339)
T PF09910_consen 78 SHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARAD---GHANLGVYSLDRRTGKAEKLSSNPSLK- 153 (339)
T ss_pred ceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEecC---CcceeeeEEEcccCCceeeccCCCCcC-
Confidence 357889988876 6543211211111111 1236788887542 234567888999999988886655542
Q ss_pred ceeEEEECCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEE
Q 012755 290 LCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQATNVVK 369 (457)
Q Consensus 290 ~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~~~~v~ 369 (457)
...+.+-.+|-+ .....-...+++||+.+++|.. ...+......+.....+..-.++...+++|++- .+.+.
T Consensus 154 --G~~~~D~a~F~i---~~~~~g~~~i~~~Dli~~~~~~-e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~--rGGi~ 225 (339)
T PF09910_consen 154 --GTLVHDYACFGI---NNFHKGVSGIHCLDLISGKWVI-ESFDVSLSVDGGPVIRPELGAMASAYNRLFAFV--RGGIF 225 (339)
T ss_pred --ceEeeeeEEEec---cccccCCceEEEEEccCCeEEE-EecccccCCCCCceEeeccccEEEEeeeEEEEE--eccEE
Confidence 233444444433 2222346789999999999932 222211111122222334445677889988883 35688
Q ss_pred EEECCCC
Q 012755 370 KYNKTNN 376 (457)
Q Consensus 370 ~Yd~~~~ 376 (457)
+.||..+
T Consensus 226 vgnP~~~ 232 (339)
T PF09910_consen 226 VGNPYNG 232 (339)
T ss_pred EeCCCCC
Confidence 8888743
No 91
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=93.93 E-value=5.2 Score=36.92 Aligned_cols=230 Identities=10% Similarity=0.055 Sum_probs=109.7
Q ss_pred EEEecCccEEEEeCCCCcEEeCCCCCCCccccCCCeeeEEeCCEEEEEceecCCcEEEEEECCCCcEEeCCCCCCCccce
Q 012755 164 YLACILMPWEAFDPLRQRWMRLPRMQCDECFTSADKESLAVGTQLLVFGRELSGFAIWMYSLIANCWSKCPQMNLPRCLF 243 (457)
Q Consensus 164 ~~~~~~~~~~~ydp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~ 243 (457)
+..++.+.+..||..++.=..+.....+...-. ...+-.+|+..+.||++.+ +.++|...-.-.+.-..+.|..
T Consensus 55 LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVt--aVgF~~dgrWMyTgseDgt--~kIWdlR~~~~qR~~~~~spVn-- 128 (311)
T KOG0315|consen 55 LAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVT--AVGFQCDGRWMYTGSEDGT--VKIWDLRSLSCQRNYQHNSPVN-- 128 (311)
T ss_pred hhhccCCeeEEEEccCCCCCceeEEeccCCceE--EEEEeecCeEEEecCCCce--EEEEeccCcccchhccCCCCcc--
Confidence 334456788889988764211111111111100 1122347788888887654 5566665533333222222211
Q ss_pred eEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCC-CcceeEEE-ECCEEEEEeccCCCCCCCceEEEEEC
Q 012755 244 GSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLP-RKLCSGFF-MDGKFYIIGGMSSPTDPLTCGEEYNL 321 (457)
Q Consensus 244 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~-r~~~~~~~-~~g~iyv~GG~~~~~~~~~~~~~yd~ 321 (457)
+++..-+.-=++.|. ....+++.|+.++...... +|.. ..-.++.+ -+|++.+.+- + ....+++++
T Consensus 129 ~vvlhpnQteLis~d-----qsg~irvWDl~~~~c~~~l-iPe~~~~i~sl~v~~dgsml~a~n-n-----kG~cyvW~l 196 (311)
T KOG0315|consen 129 TVVLHPNQTELISGD-----QSGNIRVWDLGENSCTHEL-IPEDDTSIQSLTVMPDGSMLAAAN-N-----KGNCYVWRL 196 (311)
T ss_pred eEEecCCcceEEeec-----CCCcEEEEEccCCcccccc-CCCCCcceeeEEEcCCCcEEEEec-C-----CccEEEEEc
Confidence 122222222222232 2457899999999765542 2222 22222333 3566554432 1 223466666
Q ss_pred CCCce-EEcCCCCCCCCCCCCCCCCCCCCEE-EEE--CCEEEEEecCCCeEEEEECCCCcEEEeccCCCccCCCCcceEE
Q 012755 322 ETRTW-KRIENMYPSNVGTQSNPAMSSPPLV-AVV--NNQLYSADQATNVVKKYNKTNNSWTVVKRLPVRANSFNGWGLA 397 (457)
Q Consensus 322 ~t~~W-~~~~~~~~~~~~~~~~~~~r~~~~~-~~~--~g~ly~~gg~~~~v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~ 397 (457)
.++.- +++.+... ...+.++.. +.+ +++..+..++...+.+|+.++. .+.-..+.... +--+.+
T Consensus 197 ~~~~~~s~l~P~~k--------~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~--rWvWdc- 264 (311)
T KOG0315|consen 197 LNHQTASELEPVHK--------FQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQ--RWVWDC- 264 (311)
T ss_pred cCCCccccceEhhh--------eecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCC--ceEEee-
Confidence 55321 12222111 113334433 333 6776666667788999998887 33222222221 112333
Q ss_pred EEEeCCEEEEEcCcCCCCCceEEEEEeeCCCC
Q 012755 398 FKACGNSLLVIGGHRELQGEIIVLHSWDPTDG 429 (457)
Q Consensus 398 ~~~~~g~lyv~GG~~~~~~~~~~v~~y~~~~~ 429 (457)
+...+++.+|.|+.++ .+..|+++.+
T Consensus 265 ~FS~dg~YlvTassd~------~~rlW~~~~~ 290 (311)
T KOG0315|consen 265 AFSADGEYLVTASSDH------TARLWDLSAG 290 (311)
T ss_pred eeccCccEEEecCCCC------ceeecccccC
Confidence 3355677666666552 4677999885
No 92
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=93.91 E-value=7.5 Score=38.69 Aligned_cols=201 Identities=15% Similarity=0.111 Sum_probs=105.5
Q ss_pred EEeCCEEEEEceecCCcEEEEEECCCCc--EEeCCCCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCc--
Q 012755 202 LAVGTQLLVFGRELSGFAIWMYSLIANC--WSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGT-- 277 (457)
Q Consensus 202 ~~~~~~lyv~GG~~~~~~v~~yd~~t~~--W~~l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~-- 277 (457)
+..++.+|+.. ....++.+|+.+.+ |+.....-..........-+++||+- ..+ ..+++||..+++
T Consensus 65 ~~~dg~v~~~~---~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g-~~~------g~~y~ld~~~G~~~ 134 (370)
T COG1520 65 ADGDGTVYVGT---RDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVG-SWD------GKLYALDASTGTLV 134 (370)
T ss_pred EeeCCeEEEec---CCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEe-ccc------ceEEEEECCCCcEE
Confidence 56688888862 12268999999887 86643210011111122226777764 222 278999997655
Q ss_pred EEECCCCCCCCcceeEEEECCEEEEEeccCCCCCCCceEEEEECCCC--ceEEcCCC-CCCCCCCCCCCCCCCCCEEEEE
Q 012755 278 WETLPDMNLPRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETR--TWKRIENM-YPSNVGTQSNPAMSSPPLVAVV 354 (457)
Q Consensus 278 W~~~~~~p~~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~-~~~~~~~~~~~~~r~~~~~~~~ 354 (457)
|+.-.+.. .+.....++.++.+|+.. ....+++.|..++ .|+.-... .. .+.....+..
T Consensus 135 W~~~~~~~-~~~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~~~----------~~~~~~~~~~ 196 (370)
T COG1520 135 WSRNVGGS-PYYASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAPLS----------LSIYGSPAIA 196 (370)
T ss_pred EEEecCCC-eEEecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCccc----------cccccCceee
Confidence 87654332 333444556678888752 1345777887765 58743322 11 1111122255
Q ss_pred CCEEEEEecC-CCeEEEEECCCC--cEEEeccCCCccCCCCcceEEEEEeCCEEEEEcCc-CCCCCceEEEEEeeCCCCC
Q 012755 355 NNQLYSADQA-TNVVKKYNKTNN--SWTVVKRLPVRANSFNGWGLAFKACGNSLLVIGGH-RELQGEIIVLHSWDPTDGN 430 (457)
Q Consensus 355 ~g~ly~~gg~-~~~v~~Yd~~~~--~W~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~-~~~~~~~~~v~~y~~~~~~ 430 (457)
++.+|+-... ...++.+|++++ .|+.-...+....... .......+.||+-++. .+.. ...++++|..+
T Consensus 197 ~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~---~~~~~~~~~v~v~~~~~~~~~--~g~~~~l~~~~-- 269 (370)
T COG1520 197 SGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAIS---TTPAVDGGPVYVDGGVYAGSY--GGKLLCLDADT-- 269 (370)
T ss_pred cceEEEecCCCcceEEEEEccCCcEeeeeeeecccCccccc---ccccccCceEEECCcEEEEec--CCeEEEEEcCC--
Confidence 6777765321 347999999776 5875332222221000 0012334555555542 1111 11366667766
Q ss_pred CCCCCeeE
Q 012755 431 SGEAQWNE 438 (457)
Q Consensus 431 w~~~~W~~ 438 (457)
+...|+.
T Consensus 270 -G~~~W~~ 276 (370)
T COG1520 270 -GELIWSF 276 (370)
T ss_pred -CceEEEE
Confidence 5556763
No 93
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=93.68 E-value=3.5 Score=40.16 Aligned_cols=135 Identities=12% Similarity=0.164 Sum_probs=78.4
Q ss_pred ceEEEEeCCCC-----cEEECCCCCCCCcceeEEEECCEEEEEeccCCCCCCCceEEEEECCCCc-eEEcCCCCCCCCCC
Q 012755 266 KSAELYNSELG-----TWETLPDMNLPRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRT-WKRIENMYPSNVGT 339 (457)
Q Consensus 266 ~~v~~yd~~t~-----~W~~~~~~p~~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~~~~~ 339 (457)
..+.+|+..+. +.+.+......-.-.+.+.++|++.+..| +.+..|+...+. +...+....
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g--------~~l~v~~l~~~~~l~~~~~~~~----- 128 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG--------NKLYVYDLDNSKTLLKKAFYDS----- 128 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET--------TEEEEEEEETTSSEEEEEEE-B-----
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec--------CEEEEEEccCcccchhhheecc-----
Confidence 67899998885 55555433333334566777898666543 467888888888 888776544
Q ss_pred CCCCCCCCCCEEEEECCEEEEEecCCCe--EEEEECCCCcEEEeccCCCccCCCCcceEEEEEe-CCEEEEEcCcCCCCC
Q 012755 340 QSNPAMSSPPLVAVVNNQLYSADQATNV--VKKYNKTNNSWTVVKRLPVRANSFNGWGLAFKAC-GNSLLVIGGHRELQG 416 (457)
Q Consensus 340 ~~~~~~r~~~~~~~~~g~ly~~gg~~~~--v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~-~g~lyv~GG~~~~~~ 416 (457)
+-...++.+.++.|++ |....+ +..|+.+..+-..++.-..+. +..++..+ ++..++++...+
T Consensus 129 -----~~~i~sl~~~~~~I~v-gD~~~sv~~~~~~~~~~~l~~va~d~~~~-----~v~~~~~l~d~~~~i~~D~~g--- 194 (321)
T PF03178_consen 129 -----PFYITSLSVFKNYILV-GDAMKSVSLLRYDEENNKLILVARDYQPR-----WVTAAEFLVDEDTIIVGDKDG--- 194 (321)
T ss_dssp -----SSSEEEEEEETTEEEE-EESSSSEEEEEEETTTE-EEEEEEESS-B-----EEEEEEEE-SSSEEEEEETTS---
T ss_pred -----eEEEEEEeccccEEEE-EEcccCEEEEEEEccCCEEEEEEecCCCc-----cEEEEEEecCCcEEEEEcCCC---
Confidence 3344456677886664 444444 456688777777776544332 23344445 555555444432
Q ss_pred ceEEEEEeeCCC
Q 012755 417 EIIVLHSWDPTD 428 (457)
Q Consensus 417 ~~~~v~~y~~~~ 428 (457)
.-.++.|+++.
T Consensus 195 -nl~~l~~~~~~ 205 (321)
T PF03178_consen 195 -NLFVLRYNPEI 205 (321)
T ss_dssp -EEEEEEE-SS-
T ss_pred -eEEEEEECCCC
Confidence 23566777654
No 94
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.66 E-value=2.8 Score=41.92 Aligned_cols=255 Identities=15% Similarity=0.130 Sum_probs=124.8
Q ss_pred CCCCcHHHHhhhceeccccccCcccccCh---hhhhhhccCcchhhhhcccccccEEEEEec-CccEEEEeCCCCc-EEe
Q 012755 110 LPGLHDDATLDILAWSSRSDYPTLSCLNR---KFKSLIASGYLYKLRRQLGMVEHWVYLACI-LMPWEAFDPLRQR-WMR 184 (457)
Q Consensus 110 ~~~LPddl~~~iLarlp~~~~~~l~~v~k---~w~~li~s~~~~~~r~~~~~~~~~l~~~~~-~~~~~~ydp~~~~-W~~ 184 (457)
-|.=|+|.+.-+-.|+..-+... +.+.| +|+.-+.+..|. +++.|+.+|+ ...+-.||..++. -..
T Consensus 35 sp~~P~d~aVt~S~rvqly~~~~-~~~~k~~srFk~~v~s~~fR--------~DG~LlaaGD~sG~V~vfD~k~r~iLR~ 105 (487)
T KOG0310|consen 35 SPKHPYDFAVTSSVRVQLYSSVT-RSVRKTFSRFKDVVYSVDFR--------SDGRLLAAGDESGHVKVFDMKSRVILRQ 105 (487)
T ss_pred CCCCCCceEEecccEEEEEecch-hhhhhhHHhhccceeEEEee--------cCCeEEEccCCcCcEEEeccccHHHHHH
Confidence 46778888888777776543222 22333 355555554443 2566777765 4566788943321 011
Q ss_pred CC--CCCCCccccCCCeeeEEeCCEEEEEceecCCcEEEEEECCCCcEE-eCCC-CCCCccceeEEeeCCEEEEEeeecC
Q 012755 185 LP--RMQCDECFTSADKESLAVGTQLLVFGRELSGFAIWMYSLIANCWS-KCPQ-MNLPRCLFGSSSLGEVAIVAGGTDK 260 (457)
Q Consensus 185 l~--~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~-~l~~-lp~~r~~~~~~~~~~~iyv~GG~~~ 260 (457)
+. ..|.... .....++.++++|++... +..+|..+..=. .+.. --.-|++ ++...++.|.+.||+++
T Consensus 106 ~~ah~apv~~~------~f~~~d~t~l~s~sDd~v--~k~~d~s~a~v~~~l~~htDYVR~g-~~~~~~~hivvtGsYDg 176 (487)
T KOG0310|consen 106 LYAHQAPVHVT------KFSPQDNTMLVSGSDDKV--VKYWDLSTAYVQAELSGHTDYVRCG-DISPANDHIVVTGSYDG 176 (487)
T ss_pred HhhccCceeEE------EecccCCeEEEecCCCce--EEEEEcCCcEEEEEecCCcceeEee-ccccCCCeEEEecCCCc
Confidence 11 1111111 113458889998876543 334444444311 1111 0111221 23345788999999875
Q ss_pred CCCccceEEEEeCCCCc-EEECCCCCCCCcceeEEEE-CCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCC
Q 012755 261 NGCILKSAELYNSELGT-WETLPDMNLPRKLCSGFFM-DGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVG 338 (457)
Q Consensus 261 ~~~~~~~v~~yd~~t~~-W~~~~~~p~~r~~~~~~~~-~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~ 338 (457)
.+-.||.++.+ |.. .+.....--.+..+ +|.+++..| -+.+.++|+.++.= .+..+...
T Consensus 177 ------~vrl~DtR~~~~~v~--elnhg~pVe~vl~lpsgs~iasAg-------Gn~vkVWDl~~G~q-ll~~~~~H--- 237 (487)
T KOG0310|consen 177 ------KVRLWDTRSLTSRVV--ELNHGCPVESVLALPSGSLIASAG-------GNSVKVWDLTTGGQ-LLTSMFNH--- 237 (487)
T ss_pred ------eEEEEEeccCCceeE--EecCCCceeeEEEcCCCCEEEEcC-------CCeEEEEEecCCce-ehhhhhcc---
Confidence 46678887774 432 22221111112222 434444322 14567788775431 12222110
Q ss_pred CCCCCCCCCCCEEEEE-CCEEEEEecCCCeEEEEECCCCcEEEeccCCCccCCCCcceEEEEEeCCEEEEEcCcCC
Q 012755 339 TQSNPAMSSPPLVAVV-NNQLYSADQATNVVKKYNKTNNSWTVVKRLPVRANSFNGWGLAFKACGNSLLVIGGHRE 413 (457)
Q Consensus 339 ~~~~~~~r~~~~~~~~-~g~ly~~gg~~~~v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~ 413 (457)
...--++... ++.-.+-|+--..|.+|| +..|+.+..+..+.. -...+ +.-++.-.++|..++
T Consensus 238 ------~KtVTcL~l~s~~~rLlS~sLD~~VKVfd--~t~~Kvv~s~~~~~p---vLsia-vs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 238 ------NKTVTCLRLASDSTRLLSGSLDRHVKVFD--TTNYKVVHSWKYPGP---VLSIA-VSPDDQTVVIGMSNG 301 (487)
T ss_pred ------cceEEEEEeecCCceEeecccccceEEEE--ccceEEEEeeecccc---eeeEE-ecCCCceEEEecccc
Confidence 0000111111 344444555667899999 556888876543321 11122 234678888887765
No 95
>PRK00178 tolB translocation protein TolB; Provisional
Probab=93.49 E-value=9.8 Score=38.66 Aligned_cols=148 Identities=9% Similarity=-0.037 Sum_probs=79.5
Q ss_pred ccEEEEeCCCCcEEeCCCCCCCccccCCCeeeEEeCC-EEEEEceecCCcEEEEEECCCCcEEeCCCCCCCccceeEEee
Q 012755 170 MPWEAFDPLRQRWMRLPRMQCDECFTSADKESLAVGT-QLLVFGRELSGFAIWMYSLIANCWSKCPQMNLPRCLFGSSSL 248 (457)
Q Consensus 170 ~~~~~ydp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~-~lyv~GG~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~ 248 (457)
..++.+|..+.+-..+...+... .. .....++ .|++........+++++|..+++.+++..-+..-.......-
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~---~~--~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spD 297 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLN---GA--PAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKD 297 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCc---CC--eEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCC
Confidence 46788888877766665433210 00 1233344 454433223345899999999998887543221111111122
Q ss_pred CCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCcceeEEEECC-EEEEEeccCCCCCCCceEEEEECCCCceE
Q 012755 249 GEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFMDG-KFYIIGGMSSPTDPLTCGEEYNLETRTWK 327 (457)
Q Consensus 249 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~ 327 (457)
+.+|++.....+ ...++.+|..++.++.+.... .........-+| .|+......+ ...++.+|+.++..+
T Consensus 298 g~~i~f~s~~~g----~~~iy~~d~~~g~~~~lt~~~-~~~~~~~~Spdg~~i~~~~~~~~----~~~l~~~dl~tg~~~ 368 (430)
T PRK00178 298 GRTLYFTSDRGG----KPQIYKVNVNGGRAERVTFVG-NYNARPRLSADGKTLVMVHRQDG----NFHVAAQDLQRGSVR 368 (430)
T ss_pred CCEEEEEECCCC----CceEEEEECCCCCEEEeecCC-CCccceEECCCCCEEEEEEccCC----ceEEEEEECCCCCEE
Confidence 445655432221 357899999999888774221 111111222244 4544432211 235889999999888
Q ss_pred EcCC
Q 012755 328 RIEN 331 (457)
Q Consensus 328 ~~~~ 331 (457)
.+..
T Consensus 369 ~lt~ 372 (430)
T PRK00178 369 ILTD 372 (430)
T ss_pred EccC
Confidence 7764
No 96
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=93.44 E-value=0.016 Score=54.59 Aligned_cols=43 Identities=23% Similarity=0.374 Sum_probs=38.2
Q ss_pred CCCCcHHHHhhhceecc-----ccccCcccccChhhhhhhccCcchhh
Q 012755 110 LPGLHDDATLDILAWSS-----RSDYPTLSCLNRKFKSLIASGYLYKL 152 (457)
Q Consensus 110 ~~~LPddl~~~iLarlp-----~~~~~~l~~v~k~w~~li~s~~~~~~ 152 (457)
+..|||||+++|++++= ..++.++++|||.|+....+|+++..
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~ 154 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRL 154 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHH
Confidence 46799999999999855 47899999999999999999999874
No 97
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=93.29 E-value=2.4 Score=42.23 Aligned_cols=150 Identities=13% Similarity=0.202 Sum_probs=87.9
Q ss_pred CCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCc--ceeEEEECCE-EEEEeccCCCCCCCceEEEEECCCCc
Q 012755 249 GEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRK--LCSGFFMDGK-FYIIGGMSSPTDPLTCGEEYNLETRT 325 (457)
Q Consensus 249 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~--~~~~~~~~g~-iyv~GG~~~~~~~~~~~~~yd~~t~~ 325 (457)
...+.+.+|.++. ..++..|-+++. .+.++...++ ..+...-+|. ..+.+|. ..-++.||+++.+
T Consensus 224 ~~plllvaG~d~~----lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r------rky~ysyDle~ak 291 (514)
T KOG2055|consen 224 TAPLLLVAGLDGT----LRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR------RKYLYSYDLETAK 291 (514)
T ss_pred CCceEEEecCCCc----EEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEeccc------ceEEEEeeccccc
Confidence 4567777887643 456666777776 4444332222 1122222555 5555543 4567899999999
Q ss_pred eEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEECCCCcEEEeccCCCccCCCCcceEEEEEeCCEE
Q 012755 326 WKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQATNVVKKYNKTNNSWTVVKRLPVRANSFNGWGLAFKACGNSL 405 (457)
Q Consensus 326 W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~~~~v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~g~l 405 (457)
-+++.++... ..+..+ .-.+..++...++-|..+.|......+++|-.--.++.... .......+..|
T Consensus 292 ~~k~~~~~g~-----e~~~~e--~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~-----~~~fsSdsk~l 359 (514)
T KOG2055|consen 292 VTKLKPPYGV-----EEKSME--RFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVS-----DFTFSSDSKEL 359 (514)
T ss_pred cccccCCCCc-----ccchhh--eeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEe-----eEEEecCCcEE
Confidence 8888765431 011111 12355667777777788889899889998854333333321 12233334567
Q ss_pred EEEcCcCCCCCceEEEEEeeCCCC
Q 012755 406 LVIGGHRELQGEIIVLHSWDPTDG 429 (457)
Q Consensus 406 yv~GG~~~~~~~~~~v~~y~~~~~ 429 (457)
++.||.. .||+||...+
T Consensus 360 ~~~~~~G-------eV~v~nl~~~ 376 (514)
T KOG2055|consen 360 LASGGTG-------EVYVWNLRQN 376 (514)
T ss_pred EEEcCCc-------eEEEEecCCc
Confidence 7777653 5889998875
No 98
>smart00284 OLF Olfactomedin-like domains.
Probab=93.20 E-value=7.4 Score=36.43 Aligned_cols=153 Identities=10% Similarity=0.001 Sum_probs=86.1
Q ss_pred CCEEEEEceec-CCcEEEEEECC----CCcEEeCCCCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEE
Q 012755 205 GTQLLVFGREL-SGFAIWMYSLI----ANCWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWE 279 (457)
Q Consensus 205 ~~~lyv~GG~~-~~~~v~~yd~~----t~~W~~l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~ 279 (457)
++.+|++.+.. ..+.+..|... .+.+.+.-.+|.+-.+.+.++++|.+|..-. ....+..||+.+++=.
T Consensus 34 ~~~~wv~~~~~~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~------~s~~iiKydL~t~~v~ 107 (255)
T smart00284 34 KSLYWYMPLNTRVLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKF------NSHDICRFDLTTETYQ 107 (255)
T ss_pred CceEEEEccccCCCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEec------CCccEEEEECCCCcEE
Confidence 45677776542 23456666432 3333333346777778888999999998533 2367999999998753
Q ss_pred ECCCCCCC------------CcceeEEEECCEEEEEeccCCCCCCCceEEEEECCCC----ceEEcCCCCCCCCCCCCCC
Q 012755 280 TLPDMNLP------------RKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETR----TWKRIENMYPSNVGTQSNP 343 (457)
Q Consensus 280 ~~~~~p~~------------r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~----~W~~~~~~~~~~~~~~~~~ 343 (457)
....+|.+ -.....++-++-|+|+=...... -.-.+-..||.+- +|.. ..+
T Consensus 108 ~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~-g~ivvSkLnp~tL~ve~tW~T--~~~---------- 174 (255)
T smart00284 108 KEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNA-GKIVISKLNPATLTIENTWIT--TYN---------- 174 (255)
T ss_pred EEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCC-CCEEEEeeCcccceEEEEEEc--CCC----------
Confidence 22222221 11223445555566663322111 1122345676653 5654 222
Q ss_pred CCCCCCEEEEECCEEEEEec----CCCeEEEEECCCCc
Q 012755 344 AMSSPPLVAVVNNQLYSADQ----ATNVVKKYNKTNNS 377 (457)
Q Consensus 344 ~~r~~~~~~~~~g~ly~~gg----~~~~v~~Yd~~~~~ 377 (457)
.+....+..+.|.||++.. ...-.+.||..+++
T Consensus 175 -k~sa~naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~ 211 (255)
T smart00284 175 -KRSASNAFMICGILYVTRSLGSKGEKVFYAYDTNTGK 211 (255)
T ss_pred -cccccccEEEeeEEEEEccCCCCCcEEEEEEECCCCc
Confidence 2333346667899999963 12346789998875
No 99
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=93.01 E-value=7 Score=35.63 Aligned_cols=182 Identities=14% Similarity=0.128 Sum_probs=82.7
Q ss_pred CCEEEEEceecCCcEEEEEECCCCcEEe-CCCCCCCccceeEEee-CCEEEEEeeecCCCCccceEEEEeCCCCcEEE-C
Q 012755 205 GTQLLVFGRELSGFAIWMYSLIANCWSK-CPQMNLPRCLFGSSSL-GEVAIVAGGTDKNGCILKSAELYNSELGTWET-L 281 (457)
Q Consensus 205 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~-l~~lp~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~-~ 281 (457)
++..+++++. ...+.+||..+++... +.. ......++... ++.+++.|+.+ ..+.+||..+..-.. +
T Consensus 62 ~~~~l~~~~~--~~~i~i~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~~~~ 131 (289)
T cd00200 62 DGTYLASGSS--DKTIRLWDLETGECVRTLTG--HTSYVSSVAFSPDGRILSSSSRD------KTIKVWDVETGKCLTTL 131 (289)
T ss_pred CCCEEEEEcC--CCeEEEEEcCcccceEEEec--cCCcEEEEEEcCCCCEEEEecCC------CeEEEEECCCcEEEEEe
Confidence 3434555543 3468888888753221 111 11111222222 34565555522 468889988554322 2
Q ss_pred CCCCCCCcceeEEEEC-CEEEEEeccCCCCCCCceEEEEECCCCce-EEcCCCCCCCCCCCCCCCCCCCCEEEEE-CCEE
Q 012755 282 PDMNLPRKLCSGFFMD-GKFYIIGGMSSPTDPLTCGEEYNLETRTW-KRIENMYPSNVGTQSNPAMSSPPLVAVV-NNQL 358 (457)
Q Consensus 282 ~~~p~~r~~~~~~~~~-g~iyv~GG~~~~~~~~~~~~~yd~~t~~W-~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~g~l 358 (457)
... ...-..+.... +.+++.+.. ...+..||..+.+- ..+... ......+... ++..
T Consensus 132 ~~~--~~~i~~~~~~~~~~~l~~~~~------~~~i~i~d~~~~~~~~~~~~~------------~~~i~~~~~~~~~~~ 191 (289)
T cd00200 132 RGH--TDWVNSVAFSPDGTFVASSSQ------DGTIKLWDLRTGKCVATLTGH------------TGEVNSVAFSPDGEK 191 (289)
T ss_pred ccC--CCcEEEEEEcCcCCEEEEEcC------CCcEEEEEccccccceeEecC------------ccccceEEECCCcCE
Confidence 211 11112223333 444444431 23577888875431 111110 1111122222 4445
Q ss_pred EEEecCCCeEEEEECCCCcEEEeccCCCccCCCCcceEEEEEe-CCEEEEEcCcCCCCCceEEEEEeeCCC
Q 012755 359 YSADQATNVVKKYNKTNNSWTVVKRLPVRANSFNGWGLAFKAC-GNSLLVIGGHRELQGEIIVLHSWDPTD 428 (457)
Q Consensus 359 y~~gg~~~~v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~-~g~lyv~GG~~~~~~~~~~v~~y~~~~ 428 (457)
+++++..+.+..||..+..-. ..+.... ..-..+... ++.+++.++.++ .+.+|+..+
T Consensus 192 l~~~~~~~~i~i~d~~~~~~~--~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~------~i~i~~~~~ 250 (289)
T cd00200 192 LLSSSSDGTIKLWDLSTGKCL--GTLRGHE----NGVNSVAFSPDGYLLASGSEDG------TIRVWDLRT 250 (289)
T ss_pred EEEecCCCcEEEEECCCCcee--cchhhcC----CceEEEEEcCCCcEEEEEcCCC------cEEEEEcCC
Confidence 556666788999999874332 2221111 011122222 356666665332 477787765
No 100
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=92.83 E-value=10 Score=36.94 Aligned_cols=194 Identities=12% Similarity=0.075 Sum_probs=89.6
Q ss_pred EEEEEe-cCccEEEEeCCC-CcEEeCCCCCCCccccCCCeeeEEeC-CEEEEEceecCCcEEEEEECC-CCcEEeCCCCC
Q 012755 162 WVYLAC-ILMPWEAFDPLR-QRWMRLPRMQCDECFTSADKESLAVG-TQLLVFGRELSGFAIWMYSLI-ANCWSKCPQMN 237 (457)
Q Consensus 162 ~l~~~~-~~~~~~~ydp~~-~~W~~l~~~p~~~~~~~~~~~~~~~~-~~lyv~GG~~~~~~v~~yd~~-t~~W~~l~~lp 237 (457)
.+|+.. ....+..||..+ .++..+...+....... ..+..+ ..||+.+. ....+..|+.. +++++.+...+
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~---l~~spd~~~lyv~~~--~~~~i~~~~~~~~g~l~~~~~~~ 77 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQP---MVISPDKRHLYVGVR--PEFRVLSYRIADDGALTFAAESP 77 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeEEecCCCCcc---EEECCCCCEEEEEEC--CCCcEEEEEECCCCceEEeeeec
Confidence 356653 356677778753 46655544432211111 112223 45666443 23567777765 45665543322
Q ss_pred CCccceeEEee--CCEEEEEeeecCCCCccceEEEEeCCCCc--EEECCCCCCCCcceeEEEE-CC-EEEEEeccCCCCC
Q 012755 238 LPRCLFGSSSL--GEVAIVAGGTDKNGCILKSAELYNSELGT--WETLPDMNLPRKLCSGFFM-DG-KFYIIGGMSSPTD 311 (457)
Q Consensus 238 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~-~g-~iyv~GG~~~~~~ 311 (457)
.+.....++.- +..+|+.. .. ...+.+||..++. .+.+...+.....|.+++. ++ .+|+..-
T Consensus 78 ~~~~p~~i~~~~~g~~l~v~~-~~-----~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~------ 145 (330)
T PRK11028 78 LPGSPTHISTDHQGRFLFSAS-YN-----ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCL------ 145 (330)
T ss_pred CCCCceEEEECCCCCEEEEEE-cC-----CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeC------
Confidence 22111222222 44566653 21 2467777775321 1122212221222333333 34 5666531
Q ss_pred CCceEEEEECCCC-ceEEcC----CCCCCCCCCCCCCCCCCCCEEEEE-C-CEEEEEecCCCeEEEEECC--CCcEEEec
Q 012755 312 PLTCGEEYNLETR-TWKRIE----NMYPSNVGTQSNPAMSSPPLVAVV-N-NQLYSADQATNVVKKYNKT--NNSWTVVK 382 (457)
Q Consensus 312 ~~~~~~~yd~~t~-~W~~~~----~~~~~~~~~~~~~~~r~~~~~~~~-~-g~ly~~gg~~~~v~~Yd~~--~~~W~~v~ 382 (457)
..+.+.+||+.++ ...... ..+. ......++.. + ..+|+.....+.+.+||.+ +++.+.+.
T Consensus 146 ~~~~v~v~d~~~~g~l~~~~~~~~~~~~----------g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~ 215 (330)
T PRK11028 146 KEDRIRLFTLSDDGHLVAQEPAEVTTVE----------GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQ 215 (330)
T ss_pred CCCEEEEEEECCCCcccccCCCceecCC----------CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEE
Confidence 2357889998763 222110 1111 1111123332 3 3677876667888888876 44555443
No 101
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=92.62 E-value=1.4 Score=36.65 Aligned_cols=81 Identities=14% Similarity=0.208 Sum_probs=50.7
Q ss_pred EECCEEEEEecC----CCeEEEEECCCCcEEEeccCCCccCCCCcceEEEEEeCCEEEEEcCcCCCCCceEEEEEeeCCC
Q 012755 353 VVNNQLYSADQA----TNVVKKYNKTNNSWTVVKRLPVRANSFNGWGLAFKACGNSLLVIGGHRELQGEIIVLHSWDPTD 428 (457)
Q Consensus 353 ~~~g~ly~~gg~----~~~v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~~~~~~v~~y~~~~ 428 (457)
.+||.||-+... ...|..||.++.+|+.+......... .....++.++|+|.++.-..... ...+.+|=.++
T Consensus 3 cinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~--~~~~~L~~~~G~L~~v~~~~~~~--~~~~~iWvLeD 78 (129)
T PF08268_consen 3 CINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSS--DCSSTLIEYKGKLALVSYNDQGE--PDSIDIWVLED 78 (129)
T ss_pred EECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccc--cCccEEEEeCCeEEEEEecCCCC--cceEEEEEeec
Confidence 478999888643 56799999999999988642111111 23356889999999987554322 12344444433
Q ss_pred CCCCCCCeeEe
Q 012755 429 GNSGEAQWNEL 439 (457)
Q Consensus 429 ~~w~~~~W~~l 439 (457)
. ++.+|...
T Consensus 79 ~--~k~~Wsk~ 87 (129)
T PF08268_consen 79 Y--EKQEWSKK 87 (129)
T ss_pred c--ccceEEEE
Confidence 2 34578755
No 102
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.59 E-value=13 Score=37.51 Aligned_cols=184 Identities=13% Similarity=0.102 Sum_probs=89.5
Q ss_pred EEeCCEEEEEceecCCcEEEEEECCCCcE-EeCCCCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEE
Q 012755 202 LAVGTQLLVFGRELSGFAIWMYSLIANCW-SKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWET 280 (457)
Q Consensus 202 ~~~~~~lyv~GG~~~~~~v~~yd~~t~~W-~~l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~ 280 (457)
+-.+|.++.+|+..+ .+.+||..++.- +.+..-..|-..--....++.+++.|+-+ ..+..+|..+..= .
T Consensus 76 fR~DG~LlaaGD~sG--~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd------~v~k~~d~s~a~v-~ 146 (487)
T KOG0310|consen 76 FRSDGRLLAAGDESG--HVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDD------KVVKYWDLSTAYV-Q 146 (487)
T ss_pred eecCCeEEEccCCcC--cEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCC------ceEEEEEcCCcEE-E
Confidence 445899999997644 588888544221 11111111111111235688899987633 2344455555442 1
Q ss_pred CCCCCCCCc---ceeEEEECCEEEEEeccCCCCCCCceEEEEECCCC-ceEEcCCCCCCCCCCCCCCCCCCCCEEEEE-C
Q 012755 281 LPDMNLPRK---LCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETR-TWKRIENMYPSNVGTQSNPAMSSPPLVAVV-N 355 (457)
Q Consensus 281 ~~~~p~~r~---~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~ 355 (457)
+ .+...-. ..+....++.|.+.|||++ .+-.||+.+. .|..--+... + --.++.+ .
T Consensus 147 ~-~l~~htDYVR~g~~~~~~~hivvtGsYDg------~vrl~DtR~~~~~v~elnhg~----------p--Ve~vl~lps 207 (487)
T KOG0310|consen 147 A-ELSGHTDYVRCGDISPANDHIVVTGSYDG------KVRLWDTRSLTSRVVELNHGC----------P--VESVLALPS 207 (487)
T ss_pred E-EecCCcceeEeeccccCCCeEEEecCCCc------eEEEEEeccCCceeEEecCCC----------c--eeeEEEcCC
Confidence 1 1111111 1122334788999999875 4677998877 4432111111 0 1123333 3
Q ss_pred CE-EEEEecCCCeEEEEECCCCcEEEeccCCCccCCCCcceEEEEEe-CCEEEEEcCcCCCCCceEEEEEeeC
Q 012755 356 NQ-LYSADQATNVVKKYNKTNNSWTVVKRLPVRANSFNGWGLAFKAC-GNSLLVIGGHRELQGEIIVLHSWDP 426 (457)
Q Consensus 356 g~-ly~~gg~~~~v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~-~g~lyv~GG~~~~~~~~~~v~~y~~ 426 (457)
|. |...|| +.|.+||..++.= .+..+. .|+-.-..+... ++.=.+-||.++ .+-+||.
T Consensus 208 gs~iasAgG--n~vkVWDl~~G~q-ll~~~~----~H~KtVTcL~l~s~~~rLlS~sLD~------~VKVfd~ 267 (487)
T KOG0310|consen 208 GSLIASAGG--NSVKVWDLTTGGQ-LLTSMF----NHNKTVTCLRLASDSTRLLSGSLDR------HVKVFDT 267 (487)
T ss_pred CCEEEEcCC--CeEEEEEecCCce-ehhhhh----cccceEEEEEeecCCceEeeccccc------ceEEEEc
Confidence 24 444455 6788888875421 112221 121111122222 445566677764 3777884
No 103
>PRK13684 Ycf48-like protein; Provisional
Probab=92.43 E-value=12 Score=36.80 Aligned_cols=209 Identities=12% Similarity=0.083 Sum_probs=103.4
Q ss_pred CCCcEEeCCCC-CCCccccCCCeeeEEeC-CEEEEEceecCCcEEEEEECCCCcEEeCCCCCCCccceeEEeeCCEEEEE
Q 012755 178 LRQRWMRLPRM-QCDECFTSADKESLAVG-TQLLVFGRELSGFAIWMYSLIANCWSKCPQMNLPRCLFGSSSLGEVAIVA 255 (457)
Q Consensus 178 ~~~~W~~l~~~-p~~~~~~~~~~~~~~~~-~~lyv~GG~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~iyv~ 255 (457)
.-.+|..+... ..+... ..+.+.+ +.+++.|.. ..+++-+-.-++|+.+.... .-..+.+....+..|++
T Consensus 117 gG~tW~~~~~~~~~~~~~----~~i~~~~~~~~~~~g~~---G~i~~S~DgG~tW~~~~~~~-~g~~~~i~~~~~g~~v~ 188 (334)
T PRK13684 117 GGKNWTRIPLSEKLPGSP----YLITALGPGTAEMATNV---GAIYRTTDGGKNWEALVEDA-AGVVRNLRRSPDGKYVA 188 (334)
T ss_pred CCCCCeEccCCcCCCCCc----eEEEEECCCcceeeecc---ceEEEECCCCCCceeCcCCC-cceEEEEEECCCCeEEE
Confidence 34589887532 111111 1123333 445555432 24565555677999875433 22334444444445555
Q ss_pred eeecCCCCccceEEE-EeCCCCcEEECCCCCCCCcceeEEE-ECCEEEEEeccCCCCCCCceEEEEE-C-CCCceEEcCC
Q 012755 256 GGTDKNGCILKSAEL-YNSELGTWETLPDMNLPRKLCSGFF-MDGKFYIIGGMSSPTDPLTCGEEYN-L-ETRTWKRIEN 331 (457)
Q Consensus 256 GG~~~~~~~~~~v~~-yd~~t~~W~~~~~~p~~r~~~~~~~-~~g~iyv~GG~~~~~~~~~~~~~yd-~-~t~~W~~~~~ 331 (457)
.|..+ .++. .|....+|+.++. +..+...+++. -++.++++|... ...+. . .-.+|+.+..
T Consensus 189 ~g~~G------~i~~s~~~gg~tW~~~~~-~~~~~l~~i~~~~~g~~~~vg~~G--------~~~~~s~d~G~sW~~~~~ 253 (334)
T PRK13684 189 VSSRG------NFYSTWEPGQTAWTPHQR-NSSRRLQSMGFQPDGNLWMLARGG--------QIRFNDPDDLESWSKPII 253 (334)
T ss_pred EeCCc------eEEEEcCCCCCeEEEeeC-CCcccceeeeEcCCCCEEEEecCC--------EEEEccCCCCCccccccC
Confidence 44332 1222 2444567998854 33333334433 467888876421 12231 2 2348997643
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEE-CCEEEEEecCCCeEEEEECCCCcEEEeccCCCccCCCCcceEEEEEeCCEEEEEcC
Q 012755 332 MYPSNVGTQSNPAMSSPPLVAVV-NNQLYSADQATNVVKKYNKTNNSWTVVKRLPVRANSFNGWGLAFKACGNSLLVIGG 410 (457)
Q Consensus 332 ~~~~~~~~~~~~~~r~~~~~~~~-~g~ly~~gg~~~~v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG 410 (457)
... ........++.. ++.++++|. .+.+..-.....+|+.+...+..+. .+...+...++++|++|.
T Consensus 254 ~~~--------~~~~~l~~v~~~~~~~~~~~G~-~G~v~~S~d~G~tW~~~~~~~~~~~---~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 254 PEI--------TNGYGYLDLAYRTPGEIWAGGG-NGTLLVSKDGGKTWEKDPVGEEVPS---NFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred Ccc--------ccccceeeEEEcCCCCEEEEcC-CCeEEEeCCCCCCCeECCcCCCCCc---ceEEEEEeCCCceEEECC
Confidence 111 001112223333 668888874 4555555555679999753222111 111223345778888776
Q ss_pred cCCCCCceEEEEEeeCCC
Q 012755 411 HRELQGEIIVLHSWDPTD 428 (457)
Q Consensus 411 ~~~~~~~~~~v~~y~~~~ 428 (457)
.- .|..|++..
T Consensus 322 ~G-------~il~~~~~~ 332 (334)
T PRK13684 322 RG-------VLLRYVGSA 332 (334)
T ss_pred Cc-------eEEEecCCC
Confidence 43 466676654
No 104
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=92.32 E-value=12 Score=36.47 Aligned_cols=239 Identities=10% Similarity=0.040 Sum_probs=104.8
Q ss_pred cEEEEEec-CccEEEEeCC-CCcEEeCCCCCCCccccCCCeeeEEe-CCEEEEEceecCCcEEEEEECCCCc--EEeCCC
Q 012755 161 HWVYLACI-LMPWEAFDPL-RQRWMRLPRMQCDECFTSADKESLAV-GTQLLVFGRELSGFAIWMYSLIANC--WSKCPQ 235 (457)
Q Consensus 161 ~~l~~~~~-~~~~~~ydp~-~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~v~~yd~~t~~--W~~l~~ 235 (457)
..||+... ...+..|+.. ..++..+...+.+....+ ..+.. +..+|+... ..+.+.+|+..++. ...+..
T Consensus 47 ~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~---i~~~~~g~~l~v~~~--~~~~v~v~~~~~~g~~~~~~~~ 121 (330)
T PRK11028 47 RHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH---ISTDHQGRFLFSASY--NANCVSVSPLDKDGIPVAPIQI 121 (330)
T ss_pred CEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE---EEECCCCCEEEEEEc--CCCeEEEEEECCCCCCCCceee
Confidence 45565432 4555566664 345554443332211111 11222 345666532 24577888775431 111222
Q ss_pred CCCCccceeEEee--CCEEEEEeeecCCCCccceEEEEeCCCC-cEEECC----CCCCCCcceeEEEE-C-CEEEEEecc
Q 012755 236 MNLPRCLFGSSSL--GEVAIVAGGTDKNGCILKSAELYNSELG-TWETLP----DMNLPRKLCSGFFM-D-GKFYIIGGM 306 (457)
Q Consensus 236 lp~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~-~W~~~~----~~p~~r~~~~~~~~-~-g~iyv~GG~ 306 (457)
++.....|.++.- +..+|+..- ..+.+.+||..+. .-.... ..+....-..++.. + ..+|+...
T Consensus 122 ~~~~~~~~~~~~~p~g~~l~v~~~------~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~- 194 (330)
T PRK11028 122 IEGLEGCHSANIDPDNRTLWVPCL------KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE- 194 (330)
T ss_pred ccCCCcccEeEeCCCCCEEEEeeC------CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec-
Confidence 2221222343333 346666532 1357889998763 222110 11111111122322 3 35777632
Q ss_pred CCCCCCCceEEEEECC--CCceEEcC---CCCCCCCCCCCCCCCCCCCEEEE-ECC-EEEEEecCCCeEEEEEC--CCCc
Q 012755 307 SSPTDPLTCGEEYNLE--TRTWKRIE---NMYPSNVGTQSNPAMSSPPLVAV-VNN-QLYSADQATNVVKKYNK--TNNS 377 (457)
Q Consensus 307 ~~~~~~~~~~~~yd~~--t~~W~~~~---~~~~~~~~~~~~~~~r~~~~~~~-~~g-~ly~~gg~~~~v~~Yd~--~~~~ 377 (457)
..+.+.+||.. +++.+.+. .++.. ....+....+.. -+| .+|+.....+.+.+|+. ++..
T Consensus 195 -----~~~~v~v~~~~~~~~~~~~~~~~~~~p~~------~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~ 263 (330)
T PRK11028 195 -----LNSSVDVWQLKDPHGEIECVQTLDMMPAD------FSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV 263 (330)
T ss_pred -----CCCEEEEEEEeCCCCCEEEEEEEecCCCc------CCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe
Confidence 24567777765 44554433 22220 011222212222 244 57776555677777766 4456
Q ss_pred EEEeccCCCccCCCCcceEEEEEeCCEEEEEcCcCCCCCceEEEEEeeCCCC
Q 012755 378 WTVVKRLPVRANSFNGWGLAFKACGNSLLVIGGHRELQGEIIVLHSWDPTDG 429 (457)
Q Consensus 378 W~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~~~~~~v~~y~~~~~ 429 (457)
++.+...+.... . .+.++..-+..||+....++ ...++..|.+++
T Consensus 264 ~~~~~~~~~~~~-p--~~~~~~~dg~~l~va~~~~~----~v~v~~~~~~~g 308 (330)
T PRK11028 264 LSFEGHQPTETQ-P--RGFNIDHSGKYLIAAGQKSH----HISVYEIDGETG 308 (330)
T ss_pred EEEeEEEecccc-C--CceEECCCCCEEEEEEccCC----cEEEEEEcCCCC
Confidence 766665443211 1 12333333556777653221 234444455554
No 105
>PRK03629 tolB translocation protein TolB; Provisional
Probab=92.10 E-value=15 Score=37.37 Aligned_cols=183 Identities=9% Similarity=-0.018 Sum_probs=94.6
Q ss_pred CcEEEEEECCCCcEEeCCCCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCcceeEEEE
Q 012755 217 GFAIWMYSLIANCWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFM 296 (457)
Q Consensus 217 ~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 296 (457)
...++++|..+++-+.+...+..-.......-+.+|++.....+ ...++++|..+++.+.+..-.... ......-
T Consensus 222 ~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~~~~~~-~~~~wSP 296 (429)
T PRK03629 222 RSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDGRSNN-TEPTWFP 296 (429)
T ss_pred CcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccCCCCCc-CceEECC
Confidence 45789999988877776554432222221222445655433222 246999999999888775432211 1111222
Q ss_pred CCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCE-EEEEec--CCCeEEEEEC
Q 012755 297 DGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQ-LYSADQ--ATNVVKKYNK 373 (457)
Q Consensus 297 ~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~-ly~~gg--~~~~v~~Yd~ 373 (457)
+|+..++..... ....++.+|+.++.-+++..... ........-+|+ |++... ....++.+|+
T Consensus 297 DG~~I~f~s~~~---g~~~Iy~~d~~~g~~~~lt~~~~-----------~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl 362 (429)
T PRK03629 297 DSQNLAYTSDQA---GRPQVYKVNINGGAPQRITWEGS-----------QNQDADVSSDGKFMVMVSSNGGQQHIAKQDL 362 (429)
T ss_pred CCCEEEEEeCCC---CCceEEEEECCCCCeEEeecCCC-----------CccCEEECCCCCEEEEEEccCCCceEEEEEC
Confidence 555333322111 12467888988877666643211 111112233554 444332 2346889999
Q ss_pred CCCcEEEeccCCCccCCCCcceEEEEEeCCEEEEEcCcCCCCCceEEEEEeeCCC
Q 012755 374 TNNSWTVVKRLPVRANSFNGWGLAFKACGNSLLVIGGHRELQGEIIVLHSWDPTD 428 (457)
Q Consensus 374 ~~~~W~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~~~~~~v~~y~~~~ 428 (457)
+++.++.+...... .... ..-+|+.+++.+..+. ...+++++.+.
T Consensus 363 ~~g~~~~Lt~~~~~------~~p~-~SpDG~~i~~~s~~~~---~~~l~~~~~~G 407 (429)
T PRK03629 363 ATGGVQVLTDTFLD------ETPS-IAPNGTMVIYSSSQGM---GSVLNLVSTDG 407 (429)
T ss_pred CCCCeEEeCCCCCC------CCce-ECCCCCEEEEEEcCCC---ceEEEEEECCC
Confidence 99998887642111 1112 2346666666555432 23566666643
No 106
>PRK04922 tolB translocation protein TolB; Provisional
Probab=91.90 E-value=16 Score=37.21 Aligned_cols=140 Identities=11% Similarity=0.112 Sum_probs=74.3
Q ss_pred cceEEEEeCCCCcEEECCCCCCCCcceeEEEECC-EEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCC
Q 012755 265 LKSAELYNSELGTWETLPDMNLPRKLCSGFFMDG-KFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNP 343 (457)
Q Consensus 265 ~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~ 343 (457)
...++++|..+++-+.+...+... ......-+| +|++....++ ...++.+|+.++.-+.+.....
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~~-~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~~~~--------- 292 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGIN-GAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTNHFG--------- 292 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCCc-cCceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECccCCC---------
Confidence 357899999998887776544221 111222345 4554432222 2468999999988766653221
Q ss_pred CCCCCCEEEEECCE-EEEEecC--CCeEEEEECCCCcEEEeccCCCccCCCCcceEEEEEeCCEEEEEcCcCCCCCceEE
Q 012755 344 AMSSPPLVAVVNNQ-LYSADQA--TNVVKKYNKTNNSWTVVKRLPVRANSFNGWGLAFKACGNSLLVIGGHRELQGEIIV 420 (457)
Q Consensus 344 ~~r~~~~~~~~~g~-ly~~gg~--~~~v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~~~~~~ 420 (457)
....+ ...-+|+ |+..... ...++.+|..++..+.+..-. .. ....+....+..|++..+..+ ...
T Consensus 293 -~~~~~-~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g--~~---~~~~~~SpDG~~Ia~~~~~~~----~~~ 361 (433)
T PRK04922 293 -IDTEP-TWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQG--NY---NARASVSPDGKKIAMVHGSGG----QYR 361 (433)
T ss_pred -Cccce-EECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCC--CC---ccCEEECCCCCEEEEEECCCC----cee
Confidence 11111 2223554 4444322 246889999888887775221 11 111222233445665544321 136
Q ss_pred EEEeeCCCC
Q 012755 421 LHSWDPTDG 429 (457)
Q Consensus 421 v~~y~~~~~ 429 (457)
+++||..++
T Consensus 362 I~v~d~~~g 370 (433)
T PRK04922 362 IAVMDLSTG 370 (433)
T ss_pred EEEEECCCC
Confidence 888888764
No 107
>PRK04043 tolB translocation protein TolB; Provisional
Probab=91.46 E-value=18 Score=36.82 Aligned_cols=180 Identities=9% Similarity=-0.001 Sum_probs=98.6
Q ss_pred CcEEEEEECCCCcEEeCCCCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCcceeEEEE
Q 012755 217 GFAIWMYSLIANCWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFM 296 (457)
Q Consensus 217 ~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 296 (457)
..++|++|..+++=+.+...+..-.......-+.+|.+.-..++ ..+++++|..++.++++...+.. .......-
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~LT~~~~~-d~~p~~SP 286 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQITNYPGI-DVNGNFVE 286 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEcccCCCc-cCccEECC
Confidence 45899999998877776543221111111122345655443322 36899999999999988654431 11111222
Q ss_pred CC-EEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCE-EEEEecC--------CC
Q 012755 297 DG-KFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQ-LYSADQA--------TN 366 (457)
Q Consensus 297 ~g-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~-ly~~gg~--------~~ 366 (457)
+| +||......+ ...++.+|..++..+++..... ... ...-+|+ |...... ..
T Consensus 287 DG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~g~------------~~~-~~SPDG~~Ia~~~~~~~~~~~~~~~ 349 (419)
T PRK04043 287 DDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFHGK------------NNS-SVSTYKNYIVYSSRETNNEFGKNTF 349 (419)
T ss_pred CCCEEEEEECCCC----CceEEEEECCCCCeEeCccCCC------------cCc-eECCCCCEEEEEEcCCCcccCCCCc
Confidence 44 5666643321 3478999999988877653211 111 2333444 3333221 14
Q ss_pred eEEEEECCCCcEEEeccCCCccCCCCcceEEEEEeCCE-EEEEcCcCCCCCceEEEEEeeCCCC
Q 012755 367 VVKKYNKTNNSWTVVKRLPVRANSFNGWGLAFKACGNS-LLVIGGHRELQGEIIVLHSWDPTDG 429 (457)
Q Consensus 367 ~v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~g~-lyv~GG~~~~~~~~~~v~~y~~~~~ 429 (457)
.++.+|++++.++.+...... ..... .-+|+ |+..... + ....++..+.+.+
T Consensus 350 ~I~v~d~~~g~~~~LT~~~~~------~~p~~-SPDG~~I~f~~~~-~---~~~~L~~~~l~g~ 402 (419)
T PRK04043 350 NLYLISTNSDYIRRLTANGVN------QFPRF-SSDGGSIMFIKYL-G---NQSALGIIRLNYN 402 (419)
T ss_pred EEEEEECCCCCeEECCCCCCc------CCeEE-CCCCCEEEEEEcc-C---CcEEEEEEecCCC
Confidence 789999999999888653211 11222 33454 5554432 2 2246777777653
No 108
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.41 E-value=13 Score=35.06 Aligned_cols=226 Identities=9% Similarity=0.064 Sum_probs=114.7
Q ss_pred cEEEEeCCCCcEEeCCCCCCCccccCCCeeeEEeCCEEEEEceecCCcEEEEEECCCCcEEeCCCCCCCcc--ceeEEee
Q 012755 171 PWEAFDPLRQRWMRLPRMQCDECFTSADKESLAVGTQLLVFGRELSGFAIWMYSLIANCWSKCPQMNLPRC--LFGSSSL 248 (457)
Q Consensus 171 ~~~~ydp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~l~~lp~~r~--~~~~~~~ 248 (457)
.+=.+||.+.+=...+ ++.....+. .++-.++..++.- ..+.+-++|+++..-++.+ +|..+. +.-.+++
T Consensus 84 aiGhLdP~tGev~~yp-Lg~Ga~Phg---iv~gpdg~~Witd---~~~aI~R~dpkt~evt~f~-lp~~~a~~nlet~vf 155 (353)
T COG4257 84 AIGHLDPATGEVETYP-LGSGASPHG---IVVGPDGSAWITD---TGLAIGRLDPKTLEVTRFP-LPLEHADANLETAVF 155 (353)
T ss_pred cceecCCCCCceEEEe-cCCCCCCce---EEECCCCCeeEec---CcceeEEecCcccceEEee-cccccCCCcccceee
Confidence 3445677776654443 222211111 1112234444432 2236888999988877764 232222 2222344
Q ss_pred --CCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCc-ceeEEEECCEEEEEeccCCCCCCCceEEEEECCCCc
Q 012755 249 --GEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRK-LCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRT 325 (457)
Q Consensus 249 --~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~-~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~ 325 (457)
.+.++..|-....+ ++||.++.-+..+.+ ..-. +--++.-+|.+|+..= .-+.+...|+.+..
T Consensus 156 D~~G~lWFt~q~G~yG-------rLdPa~~~i~vfpaP-qG~gpyGi~atpdGsvwyasl------agnaiaridp~~~~ 221 (353)
T COG4257 156 DPWGNLWFTGQIGAYG-------RLDPARNVISVFPAP-QGGGPYGICATPDGSVWYASL------AGNAIARIDPFAGH 221 (353)
T ss_pred CCCccEEEeeccccce-------ecCcccCceeeeccC-CCCCCcceEECCCCcEEEEec------cccceEEcccccCC
Confidence 35666665322111 345555443333222 2222 2233455889988631 12446667888875
Q ss_pred eEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEECCCCcEEEeccCCCccCCCCcceEEEEEeCCEE
Q 012755 326 WKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQATNVVKKYNKTNNSWTVVKRLPVRANSFNGWGLAFKACGNSL 405 (457)
Q Consensus 326 W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~~~~v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~g~l 405 (457)
=+.++.... .....|. .-+--.|++++-......+..|||...+|.+-+ +|...-.. . ...+.-.|++
T Consensus 222 aev~p~P~~------~~~gsRr--iwsdpig~~wittwg~g~l~rfdPs~~sW~eyp-LPgs~arp--y-s~rVD~~grV 289 (353)
T COG4257 222 AEVVPQPNA------LKAGSRR--IWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYP-LPGSKARP--Y-SMRVDRHGRV 289 (353)
T ss_pred cceecCCCc------ccccccc--cccCccCcEEEeccCCceeeEeCcccccceeee-CCCCCCCc--c-eeeeccCCcE
Confidence 554443211 0111121 122335778887666778999999999998864 44322111 1 1223445677
Q ss_pred EEEcCcCCCCCceEEEEEeeCCCCCCCCCCeeEecc
Q 012755 406 LVIGGHRELQGEIIVLHSWDPTDGNSGEAQWNELAV 441 (457)
Q Consensus 406 yv~GG~~~~~~~~~~v~~y~~~~~~w~~~~W~~l~~ 441 (457)
++--- . ...+..+||++. +..+++-
T Consensus 290 W~sea-~-----agai~rfdpeta-----~ftv~p~ 314 (353)
T COG4257 290 WLSEA-D-----AGAIGRFDPETA-----RFTVLPI 314 (353)
T ss_pred Eeecc-c-----cCceeecCcccc-----eEEEecC
Confidence 76221 1 125888999886 6777765
No 109
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=91.37 E-value=17 Score=36.49 Aligned_cols=184 Identities=8% Similarity=-0.047 Sum_probs=90.9
Q ss_pred CcEEEEEECCCCcEEeCCCCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCcceeEEEE
Q 012755 217 GFAIWMYSLIANCWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFM 296 (457)
Q Consensus 217 ~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 296 (457)
...+++.|.....=+.+......-... ...-+++..++....+. ...++++|..++.-..+...+..... ....-
T Consensus 169 ~~~l~~~d~~g~~~~~l~~~~~~~~~p-~~Spdg~~la~~~~~~~---~~~i~v~d~~~g~~~~~~~~~~~~~~-~~~sp 243 (417)
T TIGR02800 169 RYELQVADYDGANPQTITRSREPILSP-AWSPDGQKLAYVSFESG---KPEIYVQDLATGQREKVASFPGMNGA-PAFSP 243 (417)
T ss_pred cceEEEEcCCCCCCEEeecCCCceecc-cCCCCCCEEEEEEcCCC---CcEEEEEECCCCCEEEeecCCCCccc-eEECC
Confidence 456788777543323332211111111 11224444444433322 25799999999877666543322211 12223
Q ss_pred CC-EEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECC-EEEEEec--CCCeEEEEE
Q 012755 297 DG-KFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNN-QLYSADQ--ATNVVKKYN 372 (457)
Q Consensus 297 ~g-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g-~ly~~gg--~~~~v~~Yd 372 (457)
+| .|++....++ ...++.+|+.++..+.+..... ....+ ...-+| .|++... ....++.+|
T Consensus 244 Dg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~~~~~----------~~~~~-~~s~dg~~l~~~s~~~g~~~iy~~d 308 (417)
T TIGR02800 244 DGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLTNGPG----------IDTEP-SWSPDGKSIAFTSDRGGSPQIYMMD 308 (417)
T ss_pred CCCEEEEEECCCC----CccEEEEECCCCCEEECCCCCC----------CCCCE-EECCCCCEEEEEECCCCCceEEEEE
Confidence 55 4655433221 2468889999888777754322 11111 112244 4444432 234799999
Q ss_pred CCCCcEEEeccCCCccCCCCcceEEEEEeCCEEEEEcCcCCCCCceEEEEEeeCCCC
Q 012755 373 KTNNSWTVVKRLPVRANSFNGWGLAFKACGNSLLVIGGHRELQGEIIVLHSWDPTDG 429 (457)
Q Consensus 373 ~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~~~~~~v~~y~~~~~ 429 (457)
..+..++.+....... ... ...-+|+.+++...... ...++.||..++
T Consensus 309 ~~~~~~~~l~~~~~~~-----~~~-~~spdg~~i~~~~~~~~---~~~i~~~d~~~~ 356 (417)
T TIGR02800 309 ADGGEVRRLTFRGGYN-----ASP-SWSPDGDLIAFVHREGG---GFNIAVMDLDGG 356 (417)
T ss_pred CCCCCEEEeecCCCCc-----cCe-EECCCCCEEEEEEccCC---ceEEEEEeCCCC
Confidence 9988887765321111 112 22335555555544321 236888888764
No 110
>PRK05137 tolB translocation protein TolB; Provisional
Probab=90.91 E-value=20 Score=36.49 Aligned_cols=147 Identities=10% Similarity=-0.073 Sum_probs=74.6
Q ss_pred CcEEEEEECCCCcEEeCCCCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCcceeEEEE
Q 012755 217 GFAIWMYSLIANCWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFM 296 (457)
Q Consensus 217 ~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 296 (457)
...+++.|.....=+.+..-..+-..... .-+++-.++...... ...++++|+.+++.+.+...+.... .....-
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~v~~p~w-SpDG~~lay~s~~~g---~~~i~~~dl~~g~~~~l~~~~g~~~-~~~~SP 255 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSLVLTPRF-SPNRQEITYMSYANG---RPRVYLLDLETGQRELVGNFPGMTF-APRFSP 255 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCCeEeeEE-CCCCCEEEEEEecCC---CCEEEEEECCCCcEEEeecCCCccc-CcEECC
Confidence 45788888765433333221111111111 124433333322211 2689999999998887765443221 112233
Q ss_pred CCE-EEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCE-EEEEec--CCCeEEEEE
Q 012755 297 DGK-FYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQ-LYSADQ--ATNVVKKYN 372 (457)
Q Consensus 297 ~g~-iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~-ly~~gg--~~~~v~~Yd 372 (457)
+|+ |++....++ ...++.+|+.++.-..+...+. .... ....-+|+ |+.... ....++.+|
T Consensus 256 DG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~~~~----------~~~~-~~~spDG~~i~f~s~~~g~~~Iy~~d 320 (435)
T PRK05137 256 DGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTDSPA----------IDTS-PSYSPDGSQIVFESDRSGSPQLYVMN 320 (435)
T ss_pred CCCEEEEEEecCC----CceEEEEECCCCceEEccCCCC----------ccCc-eeEcCCCCEEEEEECCCCCCeEEEEE
Confidence 554 444332221 3568889999988777754322 1111 12223454 443321 134789999
Q ss_pred CCCCcEEEecc
Q 012755 373 KTNNSWTVVKR 383 (457)
Q Consensus 373 ~~~~~W~~v~~ 383 (457)
.++...+.+..
T Consensus 321 ~~g~~~~~lt~ 331 (435)
T PRK05137 321 ADGSNPRRISF 331 (435)
T ss_pred CCCCCeEEeec
Confidence 88887777653
No 111
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=90.90 E-value=18 Score=35.79 Aligned_cols=64 Identities=11% Similarity=0.144 Sum_probs=39.6
Q ss_pred CCEEEEEe-c--------CCCeEEEEECCCCcEEEeccCCCccCCCCcceEEEEEeCC-EEEEEcCcCCCCCceEEEEEe
Q 012755 355 NNQLYSAD-Q--------ATNVVKKYNKTNNSWTVVKRLPVRANSFNGWGLAFKACGN-SLLVIGGHRELQGEIIVLHSW 424 (457)
Q Consensus 355 ~g~ly~~g-g--------~~~~v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~g-~lyv~GG~~~~~~~~~~v~~y 424 (457)
++++|+.. + ..+.|+++|.++ ++.+..++.... -+++++..-+. .||+.-+.. .++.++
T Consensus 259 g~~lyV~~~~~~~~thk~~~~~V~ViD~~t--~kvi~~i~vG~~---~~~iavS~Dgkp~lyvtn~~s------~~VsVi 327 (352)
T TIGR02658 259 RDRIYLLADQRAKWTHKTASRFLFVVDAKT--GKRLRKIELGHE---IDSINVSQDAKPLLYALSTGD------KTLYIF 327 (352)
T ss_pred CCEEEEEecCCccccccCCCCEEEEEECCC--CeEEEEEeCCCc---eeeEEECCCCCeEEEEeCCCC------CcEEEE
Confidence 57899842 2 236899999765 666666554432 23444434455 677766543 258889
Q ss_pred eCCCC
Q 012755 425 DPTDG 429 (457)
Q Consensus 425 ~~~~~ 429 (457)
|..+.
T Consensus 328 D~~t~ 332 (352)
T TIGR02658 328 DAETG 332 (352)
T ss_pred ECcCC
Confidence 98875
No 112
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=90.84 E-value=24 Score=37.15 Aligned_cols=140 Identities=12% Similarity=0.076 Sum_probs=73.4
Q ss_pred EECCEEE-EEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEEC
Q 012755 295 FMDGKFY-IIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQATNVVKKYNK 373 (457)
Q Consensus 295 ~~~g~iy-v~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~~~~v~~Yd~ 373 (457)
..++... ++||..+ ..+-++|..+++=-.+-.|...+. .......-.++..+.+...+.|.+.+.|..+|+
T Consensus 161 sw~~~~~~i~~Gs~D-----g~Iriwd~~~~~t~~~~~~~~d~l---~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~ 232 (691)
T KOG2048|consen 161 SWNPTGTKIAGGSID-----GVIRIWDVKSGQTLHIITMQLDRL---SKREPTIVWSVLFLRDSTIASGDSAGTVTFWDS 232 (691)
T ss_pred EecCCccEEEecccC-----ceEEEEEcCCCceEEEeeeccccc---ccCCceEEEEEEEeecCcEEEecCCceEEEEcc
Confidence 3444444 6666532 235667777665444333332000 000011112334555566667778899999999
Q ss_pred CCCcEEEeccCCCccCCCCcceEEEEEe-CCEEEEEcCcCCCCCceEEEEEeeCCCCCCCCCCeeEeccccccCceEEee
Q 012755 374 TNNSWTVVKRLPVRANSFNGWGLAFKAC-GNSLLVIGGHRELQGEIIVLHSWDPTDGNSGEAQWNELAVRERAGAFVYNC 452 (457)
Q Consensus 374 ~~~~W~~v~~~p~~~~~~~~~~~~~~~~-~g~lyv~GG~~~~~~~~~~v~~y~~~~~~w~~~~W~~l~~~~~~~~~~~~~ 452 (457)
+..+-.+--.. .. ....++++. ++.-++.+|.++ .+..|...++ +.+|.....+-.++.-+.+.
T Consensus 233 ~~gTLiqS~~~--h~----adVl~Lav~~~~d~vfsaGvd~------~ii~~~~~~~---~~~wv~~~~r~~h~hdvrs~ 297 (691)
T KOG2048|consen 233 IFGTLIQSHSC--HD----ADVLALAVADNEDRVFSAGVDP------KIIQYSLTTN---KSEWVINSRRDLHAHDVRSM 297 (691)
T ss_pred cCcchhhhhhh--hh----cceeEEEEcCCCCeEEEccCCC------ceEEEEecCC---ccceeeeccccCCcccceee
Confidence 88764332111 11 112334443 334455566664 3555666553 33798887777777767666
Q ss_pred eeecC
Q 012755 453 AVMGC 457 (457)
Q Consensus 453 ~~~~~ 457 (457)
++.+|
T Consensus 298 av~~~ 302 (691)
T KOG2048|consen 298 AVIEN 302 (691)
T ss_pred eeecc
Confidence 66554
No 113
>PLN00181 protein SPA1-RELATED; Provisional
Probab=90.80 E-value=27 Score=38.77 Aligned_cols=183 Identities=10% Similarity=0.121 Sum_probs=88.9
Q ss_pred EEEEEceecCCcEEEEEECCCCcEEeCCCCCCCccceeEEee--CCEEEEEeeecCCCCccceEEEEeCCCCcE-EECCC
Q 012755 207 QLLVFGRELSGFAIWMYSLIANCWSKCPQMNLPRCLFGSSSL--GEVAIVAGGTDKNGCILKSAELYNSELGTW-ETLPD 283 (457)
Q Consensus 207 ~lyv~GG~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~ 283 (457)
..++.|+. ...+.+||..+++-...-. .....-.+++.. ++.+++.||.+ ..+.+||..++.- ..+..
T Consensus 546 ~~las~~~--Dg~v~lWd~~~~~~~~~~~-~H~~~V~~l~~~p~~~~~L~Sgs~D------g~v~iWd~~~~~~~~~~~~ 616 (793)
T PLN00181 546 SQVASSNF--EGVVQVWDVARSQLVTEMK-EHEKRVWSIDYSSADPTLLASGSDD------GSVKLWSINQGVSIGTIKT 616 (793)
T ss_pred CEEEEEeC--CCeEEEEECCCCeEEEEec-CCCCCEEEEEEcCCCCCEEEEEcCC------CEEEEEECCCCcEEEEEec
Confidence 34444443 3468888887764322111 111112233332 45677777654 3578888876542 22211
Q ss_pred CCCCCcceeEEE--ECCEEEEEeccCCCCCCCceEEEEECCCCc--eEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEE
Q 012755 284 MNLPRKLCSGFF--MDGKFYIIGGMSSPTDPLTCGEEYNLETRT--WKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLY 359 (457)
Q Consensus 284 ~p~~r~~~~~~~--~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly 359 (457)
.....++.. -++.+++.|+.+ ..+..||+.+.. ...+... ......+...++..+
T Consensus 617 ---~~~v~~v~~~~~~g~~latgs~d------g~I~iwD~~~~~~~~~~~~~h------------~~~V~~v~f~~~~~l 675 (793)
T PLN00181 617 ---KANICCVQFPSESGRSLAFGSAD------HKVYYYDLRNPKLPLCTMIGH------------SKTVSYVRFVDSSTL 675 (793)
T ss_pred ---CCCeEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCCccceEecCC------------CCCEEEEEEeCCCEE
Confidence 111111111 246677776543 367889987642 1111110 011112333466667
Q ss_pred EEecCCCeEEEEECCCC----cEEEeccCCCccCCCCcceEEEEEeCCEEEEEcCcCCCCCceEEEEEeeCCC
Q 012755 360 SADQATNVVKKYNKTNN----SWTVVKRLPVRANSFNGWGLAFKACGNSLLVIGGHRELQGEIIVLHSWDPTD 428 (457)
Q Consensus 360 ~~gg~~~~v~~Yd~~~~----~W~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~~~~~~v~~y~~~~ 428 (457)
+.++..+.+..||.... .|..+..+..... .........++.+++.|+.++ .+.+|+...
T Consensus 676 vs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~---~i~~v~~s~~~~~lasgs~D~------~v~iw~~~~ 739 (793)
T PLN00181 676 VSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN---VKNFVGLSVSDGYIATGSETN------EVFVYHKAF 739 (793)
T ss_pred EEEECCCEEEEEeCCCCccccCCcceEEEcCCCC---CeeEEEEcCCCCEEEEEeCCC------EEEEEECCC
Confidence 77777788999998643 2433332221111 001111233567777777653 577777654
No 114
>PRK02889 tolB translocation protein TolB; Provisional
Probab=90.73 E-value=21 Score=36.33 Aligned_cols=160 Identities=11% Similarity=-0.020 Sum_probs=80.4
Q ss_pred EeCC-EEEEEceecCCcEEEEEECCCCcEEeCCCCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEEC
Q 012755 203 AVGT-QLLVFGRELSGFAIWMYSLIANCWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETL 281 (457)
Q Consensus 203 ~~~~-~lyv~GG~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 281 (457)
..++ .|++.........++++|..+++=+.+...+..........-+.+|++....++ ...++.+|..++..+.+
T Consensus 204 SPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~l 279 (427)
T PRK02889 204 SPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRRL 279 (427)
T ss_pred cCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEEC
Confidence 3444 443333223345799999988876665544321111111112345555433322 36788999988877666
Q ss_pred CCCCCCCcceeEEEECCE-EEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCE-EE
Q 012755 282 PDMNLPRKLCSGFFMDGK-FYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQ-LY 359 (457)
Q Consensus 282 ~~~p~~r~~~~~~~~~g~-iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~-ly 359 (457)
..-.. ........-+|+ |+......+ ...++.+|..++..+.+..... .... ....-+|+ |+
T Consensus 280 t~~~~-~~~~~~wSpDG~~l~f~s~~~g----~~~Iy~~~~~~g~~~~lt~~g~----------~~~~-~~~SpDG~~Ia 343 (427)
T PRK02889 280 TQSSG-IDTEPFFSPDGRSIYFTSDRGG----APQIYRMPASGGAAQRVTFTGS----------YNTS-PRISPDGKLLA 343 (427)
T ss_pred CCCCC-CCcCeEEcCCCCEEEEEecCCC----CcEEEEEECCCCceEEEecCCC----------CcCc-eEECCCCCEEE
Confidence 43221 111112233555 444322111 2357788887777766642111 1111 12233454 44
Q ss_pred EEecC--CCeEEEEECCCCcEEEec
Q 012755 360 SADQA--TNVVKKYNKTNNSWTVVK 382 (457)
Q Consensus 360 ~~gg~--~~~v~~Yd~~~~~W~~v~ 382 (457)
..... ...++.+|..++..+.+.
T Consensus 344 ~~s~~~g~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 344 YISRVGGAFKLYVQDLATGQVTALT 368 (427)
T ss_pred EEEccCCcEEEEEEECCCCCeEEcc
Confidence 33322 236899999988877765
No 115
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=90.66 E-value=4.5 Score=39.36 Aligned_cols=225 Identities=15% Similarity=0.093 Sum_probs=97.9
Q ss_pred ccEEEEeCCCCcEEeCCCCCCC-ccccCC--CeeeEEeCC-EEEEEceecCCcEEEEEECCCCcEEeCCCC-------CC
Q 012755 170 MPWEAFDPLRQRWMRLPRMQCD-ECFTSA--DKESLAVGT-QLLVFGRELSGFAIWMYSLIANCWSKCPQM-------NL 238 (457)
Q Consensus 170 ~~~~~ydp~~~~W~~l~~~p~~-~~~~~~--~~~~~~~~~-~lyv~GG~~~~~~v~~yd~~t~~W~~l~~l-------p~ 238 (457)
.-+..||+.+=.-..=-.+|.. |..... ....+..++ .+||. -..+..+|-+-|...++--.--+. |.
T Consensus 67 Dvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~-N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~ 145 (342)
T PF06433_consen 67 DVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQ-NFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPS 145 (342)
T ss_dssp EEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEE-EESSSEEEEEEETTTTEEEEEEEGTSEEEEEEE
T ss_pred eEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEE-ccCCCCeEEEEECCCCceeeeecCCCEEEEEec
Confidence 3456889877633211112322 221111 111233344 44543 445567888999988876432111 21
Q ss_pred -CccceeEEeeCCEEEEEe-eecCCCCccceEEEEeCCCCcEEECCCCCCCCcceeEEEECCEEEEEeccCCCCCCCceE
Q 012755 239 -PRCLFGSSSLGEVAIVAG-GTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFMDGKFYIIGGMSSPTDPLTCG 316 (457)
Q Consensus 239 -~r~~~~~~~~~~~iyv~G-G~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~ 316 (457)
+|. |++..-+|.+.-+. +.++. .......+||+..+-.-.-+.........--..++|++|-+.=.... ..-.
T Consensus 146 ~~~~-F~~lC~DGsl~~v~Ld~~Gk-~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~---~~~~ 220 (342)
T PF06433_consen 146 GNRG-FSMLCGDGSLLTVTLDADGK-EAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS---AKFG 220 (342)
T ss_dssp ETTE-EEEEETTSCEEEEEETSTSS-EEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS---EEEE
T ss_pred CCCc-eEEEecCCceEEEEECCCCC-EeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc---cccc
Confidence 232 33322344443332 21222 22334467777665432222211111112224668888875321111 1112
Q ss_pred EEEECCC-----CceEEcCCCCCCCCCCCCCCCCCCCCEEEEE--CCEEEEEec-----C----CCeEEEEECCCCcEEE
Q 012755 317 EEYNLET-----RTWKRIENMYPSNVGTQSNPAMSSPPLVAVV--NNQLYSADQ-----A----TNVVKKYNKTNNSWTV 380 (457)
Q Consensus 317 ~~yd~~t-----~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~g~ly~~gg-----~----~~~v~~Yd~~~~~W~~ 380 (457)
..+...+ ..|..- ....++.. .++||++-. . ..+||+||+++.+ +
T Consensus 221 ~~~~~~t~~e~~~~WrPG-----------------G~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k--r 281 (342)
T PF06433_consen 221 KPWSLLTDAEKADGWRPG-----------------GWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK--R 281 (342)
T ss_dssp EEEESS-HHHHHTTEEE------------------SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE--E
T ss_pred CcccccCccccccCcCCc-----------------ceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCe--E
Confidence 2233222 234411 11223332 679998731 1 2379999999985 3
Q ss_pred eccCCCccCCCCcceEEEEEeCC--EEEEEcCcCCCCCceEEEEEeeCCCC
Q 012755 381 VKRLPVRANSFNGWGLAFKACGN--SLLVIGGHRELQGEIIVLHSWDPTDG 429 (457)
Q Consensus 381 v~~~p~~~~~~~~~~~~~~~~~g--~lyv~GG~~~~~~~~~~v~~y~~~~~ 429 (457)
+..++.... ...+++ .-++ .||.+-+.+ ..+++||+.++
T Consensus 282 v~Ri~l~~~---~~Si~V-sqd~~P~L~~~~~~~------~~l~v~D~~tG 322 (342)
T PF06433_consen 282 VARIPLEHP---IDSIAV-SQDDKPLLYALSAGD------GTLDVYDAATG 322 (342)
T ss_dssp EEEEEEEEE---ESEEEE-ESSSS-EEEEEETTT------TEEEEEETTT-
T ss_pred EEEEeCCCc---cceEEE-ccCCCcEEEEEcCCC------CeEEEEeCcCC
Confidence 333332111 112332 2233 566654433 16899999985
No 116
>PRK04792 tolB translocation protein TolB; Provisional
Probab=90.63 E-value=22 Score=36.45 Aligned_cols=139 Identities=12% Similarity=0.090 Sum_probs=73.8
Q ss_pred ceEEEEeCCCCcEEECCCCCCCCcceeEEEECCE-EEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCC
Q 012755 266 KSAELYNSELGTWETLPDMNLPRKLCSGFFMDGK-FYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPA 344 (457)
Q Consensus 266 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~-iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~ 344 (457)
..++++|..+++-+.+...+.... .....-+|+ |++....++ ...++.+|..+++.+.+.....
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~-~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~~~---------- 306 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGING-APRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRHRA---------- 306 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcC-CeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccCCC----------
Confidence 579999999988777755442211 112223454 554432221 3468899999998887764321
Q ss_pred CCCCCEEEEECCE-EEEEec--CCCeEEEEECCCCcEEEeccCCCccCCCCcceEEEEEeCCEEEEEcCcCCCCCceEEE
Q 012755 345 MSSPPLVAVVNNQ-LYSADQ--ATNVVKKYNKTNNSWTVVKRLPVRANSFNGWGLAFKACGNSLLVIGGHRELQGEIIVL 421 (457)
Q Consensus 345 ~r~~~~~~~~~g~-ly~~gg--~~~~v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~~~~~~v 421 (457)
....+ ...-+|+ |++... ....++.+|.++++++.+..-... ....+...-+..|++.+...+ ...+
T Consensus 307 ~~~~p-~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~-----~~~~~~SpDG~~l~~~~~~~g----~~~I 376 (448)
T PRK04792 307 IDTEP-SWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQ-----NLGGSITPDGRSMIMVNRTNG----KFNI 376 (448)
T ss_pred Cccce-EECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCC-----CcCeeECCCCCEEEEEEecCC----ceEE
Confidence 11111 1223444 444432 235799999999998887521111 111222222345555443221 2357
Q ss_pred EEeeCCCC
Q 012755 422 HSWDPTDG 429 (457)
Q Consensus 422 ~~y~~~~~ 429 (457)
+.+|+.++
T Consensus 377 ~~~dl~~g 384 (448)
T PRK04792 377 ARQDLETG 384 (448)
T ss_pred EEEECCCC
Confidence 78887764
No 117
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=90.43 E-value=9 Score=35.60 Aligned_cols=204 Identities=13% Similarity=0.129 Sum_probs=92.7
Q ss_pred eeEEeCCEEEEEcee--cCCc---EEEEEEC---CCCcEEe--CCCCCC-------CccceeEEeeCCEEEEEeeecCCC
Q 012755 200 ESLAVGTQLLVFGRE--LSGF---AIWMYSL---IANCWSK--CPQMNL-------PRCLFGSSSLGEVAIVAGGTDKNG 262 (457)
Q Consensus 200 ~~~~~~~~lyv~GG~--~~~~---~v~~yd~---~t~~W~~--l~~lp~-------~r~~~~~~~~~~~iyv~GG~~~~~ 262 (457)
.+-++++.||.+=.. ...+ ..+.|+. ..+.|+. ++..|. .-..|+.+.+++.-|.+|=.+++-
T Consensus 79 SMGv~~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~ 158 (367)
T PF12217_consen 79 SMGVVGNRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDV 158 (367)
T ss_dssp -EEEETTEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SS
T ss_pred eeeeecceeeEEEeehhhhhhhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCC
Confidence 366789999865432 2222 2233443 4677865 444443 334678888988888888777654
Q ss_pred CccceEEEEeCC-----CC-cEEECCCC-CCCCcceeEEEECCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCC
Q 012755 263 CILKSAELYNSE-----LG-TWETLPDM-NLPRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPS 335 (457)
Q Consensus 263 ~~~~~v~~yd~~-----t~-~W~~~~~~-p~~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~ 335 (457)
.+..--..|=+. .. .=+.++.- ...-+..++-.++|++|+.-........-+.+.+-+.....|+.+.-...
T Consensus 159 sPRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp~n- 237 (367)
T PF12217_consen 159 SPRELGFLYFSDAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFPNN- 237 (367)
T ss_dssp SS-EEEEEEETTTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-TT--
T ss_pred CcceeeEEEecccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhcccccc-
Confidence 332222223221 11 11223221 11122344557899999986544443345567778888889997743211
Q ss_pred CCCCCCCCCCCCCCEEEEECCEEEEEecC------------------CCeEE-------EEECCCCcEEEeccCC-CccC
Q 012755 336 NVGTQSNPAMSSPPLVAVVNNQLYSADQA------------------TNVVK-------KYNKTNNSWTVVKRLP-VRAN 389 (457)
Q Consensus 336 ~~~~~~~~~~r~~~~~~~~~g~ly~~gg~------------------~~~v~-------~Yd~~~~~W~~v~~~p-~~~~ 389 (457)
......-.+..++.||++|.. .-... .+.++.-+|..+..-- ....
T Consensus 238 --------vHhtnlPFakvgD~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~i 309 (367)
T PF12217_consen 238 --------VHHTNLPFAKVGDVLYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGI 309 (367)
T ss_dssp ----------SS---EEEETTEEEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SS
T ss_pred --------ccccCCCceeeCCEEEEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceecccc
Confidence 033344467789999999841 00111 1356667888776322 1111
Q ss_pred CCCcceEE-EEEeCCEE-EEEcCcC
Q 012755 390 SFNGWGLA-FKACGNSL-LVIGGHR 412 (457)
Q Consensus 390 ~~~~~~~~-~~~~~g~l-yv~GG~~ 412 (457)
..++.|+. ++..+|-| |+|||.+
T Consensus 310 vNSavGVGSv~~KD~~lyy~FGgED 334 (367)
T PF12217_consen 310 VNSAVGVGSVVVKDGWLYYIFGGED 334 (367)
T ss_dssp S---SEEEEEEEETTEEEEEEEEB-
T ss_pred ccccccceeEEEECCEEEEEecCcc
Confidence 22244444 34457754 6778875
No 118
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=90.19 E-value=13 Score=33.20 Aligned_cols=151 Identities=11% Similarity=-0.005 Sum_probs=74.2
Q ss_pred eEEeCCEEEEEceecCCcEEEEEECCCCcE--EeC----CCCCCCccceeEEee-CCEEEEEeeecCCCCccceEEEEeC
Q 012755 201 SLAVGTQLLVFGRELSGFAIWMYSLIANCW--SKC----PQMNLPRCLFGSSSL-GEVAIVAGGTDKNGCILKSAELYNS 273 (457)
Q Consensus 201 ~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W--~~l----~~lp~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~ 273 (457)
++...+.+|+|-|. .+|+++...... +.+ +.+|. ....+.... ++++|+|-| +..++||.
T Consensus 12 ~~~~~g~~y~FkG~----~~w~~~~~~~~~~p~~I~~~w~~~p~-~IDAa~~~~~~~~~yfFkg--------~~yw~~~~ 78 (194)
T cd00094 12 VTTLRGELYFFKGR----YFWRLSPGKPPGSPFLISSFWPSLPS-PVDAAFERPDTGKIYFFKG--------DKYWVYTG 78 (194)
T ss_pred EEEeCCEEEEEeCC----EEEEEeCCCCCCCCeEhhhhCCCCCC-CccEEEEECCCCEEEEECC--------CEEEEEcC
Confidence 34456899998764 578887652111 111 22222 122222222 388999965 35777776
Q ss_pred CCCcEE---ECC--CCCCCCcce-eEEEE--CCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCC
Q 012755 274 ELGTWE---TLP--DMNLPRKLC-SGFFM--DGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAM 345 (457)
Q Consensus 274 ~t~~W~---~~~--~~p~~r~~~-~~~~~--~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~ 345 (457)
.+..+. .+. ..+...... ++... ++++|++.| +..+.||..+++-..--+... .....-.+
T Consensus 79 ~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg--------~~y~ry~~~~~~v~~~yP~~i---~~~w~g~p 147 (194)
T cd00094 79 KNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG--------DKYWRYDEKTQKMDPGYPKLI---ETDFPGVP 147 (194)
T ss_pred cccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC--------CEEEEEeCCCccccCCCCcch---hhcCCCcC
Confidence 542221 111 111100111 22233 689999965 346778876554321100000 00000001
Q ss_pred CCCCEEEEE-CCEEEEEecCCCeEEEEECCCCc
Q 012755 346 SSPPLVAVV-NNQLYSADQATNVVKKYNKTNNS 377 (457)
Q Consensus 346 r~~~~~~~~-~g~ly~~gg~~~~v~~Yd~~~~~ 377 (457)
....++... ++++|++-| +..++||..+++
T Consensus 148 ~~idaa~~~~~~~~yfF~g--~~y~~~d~~~~~ 178 (194)
T cd00094 148 DKVDAAFRWLDGYYYFFKG--DQYWRFDPRSKE 178 (194)
T ss_pred CCcceeEEeCCCcEEEEEC--CEEEEEeCccce
Confidence 112233334 489999965 689999998776
No 119
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.05 E-value=15 Score=33.69 Aligned_cols=173 Identities=10% Similarity=0.099 Sum_probs=95.8
Q ss_pred cEEEEEECCCCcEEeCCCCCCCcccee----EEee--CCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCcce
Q 012755 218 FAIWMYSLIANCWSKCPQMNLPRCLFG----SSSL--GEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLC 291 (457)
Q Consensus 218 ~~v~~yd~~t~~W~~l~~lp~~r~~~~----~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~ 291 (457)
..+.+||..|++=.+- ..+|. .+.+ +..+.+.|+++ .++-.+|.++++-+.+.-+...+...
T Consensus 81 k~v~vwDV~TGkv~Rr------~rgH~aqVNtV~fNeesSVv~SgsfD------~s~r~wDCRS~s~ePiQildea~D~V 148 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRR------FRGHLAQVNTVRFNEESSVVASGSFD------SSVRLWDCRSRSFEPIQILDEAKDGV 148 (307)
T ss_pred ceEEEEEcccCeeeee------cccccceeeEEEecCcceEEEecccc------ceeEEEEcccCCCCccchhhhhcCce
Confidence 4789999998853221 01111 1222 33566666654 57888999999988888888888888
Q ss_pred eEEEECCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEE
Q 012755 292 SGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQATNVVKKY 371 (457)
Q Consensus 292 ~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~~~~v~~Y 371 (457)
..+.+.+...|.|..++ .+..||+..++-.. ..+.. +- ......-++.-.+++.....+...
T Consensus 149 ~Si~v~~heIvaGS~DG------tvRtydiR~G~l~s-Dy~g~----------pi-t~vs~s~d~nc~La~~l~stlrLl 210 (307)
T KOG0316|consen 149 SSIDVAEHEIVAGSVDG------TVRTYDIRKGTLSS-DYFGH----------PI-TSVSFSKDGNCSLASSLDSTLRLL 210 (307)
T ss_pred eEEEecccEEEeeccCC------cEEEEEeecceeeh-hhcCC----------cc-eeEEecCCCCEEEEeeccceeeec
Confidence 88888888877765443 45679987765321 01111 00 011112255555555445566677
Q ss_pred ECCCCcEEEeccCCCccCCCCcceEEEEEeCCEEEEEcCcCCCCCceEEEEEeeCCCC
Q 012755 372 NKTNNSWTVVKRLPVRANSFNGWGLAFKACGNSLLVIGGHRELQGEIIVLHSWDPTDG 429 (457)
Q Consensus 372 d~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~~~~~~v~~y~~~~~ 429 (457)
|.++++--..-.-..... +-.-++..+.--.|++|.... .++.||....
T Consensus 211 Dk~tGklL~sYkGhkn~e----ykldc~l~qsdthV~sgSEDG-----~Vy~wdLvd~ 259 (307)
T KOG0316|consen 211 DKETGKLLKSYKGHKNME----YKLDCCLNQSDTHVFSGSEDG-----KVYFWDLVDE 259 (307)
T ss_pred ccchhHHHHHhcccccce----eeeeeeecccceeEEeccCCc-----eEEEEEeccc
Confidence 777764221110000110 112223334445666665432 5889998774
No 120
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=89.99 E-value=42 Score=38.60 Aligned_cols=249 Identities=13% Similarity=0.060 Sum_probs=125.9
Q ss_pred ccEEEEEe-cCccEEEEeCCCCcEEeCCCCCCC--------ccccCCCeeeEEe--CCEEEEEceecCCcEEEEEECCCC
Q 012755 160 EHWVYLAC-ILMPWEAFDPLRQRWMRLPRMQCD--------ECFTSADKESLAV--GTQLLVFGRELSGFAIWMYSLIAN 228 (457)
Q Consensus 160 ~~~l~~~~-~~~~~~~ydp~~~~W~~l~~~p~~--------~~~~~~~~~~~~~--~~~lyv~GG~~~~~~v~~yd~~t~ 228 (457)
++.+|+.- +.+.+.++|+....=..+...... .........++.. ++.|||.... ...+.++|+.++
T Consensus 579 ~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~--n~~Ir~id~~~~ 656 (1057)
T PLN02919 579 NNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE--NHALREIDFVNE 656 (1057)
T ss_pred CCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC--CceEEEEecCCC
Confidence 56688764 357788999865432233221100 0001111223332 4678886532 356888888777
Q ss_pred cEEeCCCC-------CCC--------ccceeEEee--CCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCC-------
Q 012755 229 CWSKCPQM-------NLP--------RCLFGSSSL--GEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDM------- 284 (457)
Q Consensus 229 ~W~~l~~l-------p~~--------r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~------- 284 (457)
.=+.+..- ... ...+.+++- ++.+||.... ...+++||+.++.......-
T Consensus 657 ~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~------~~~I~v~d~~~g~v~~~~G~G~~~~~~ 730 (1057)
T PLN02919 657 TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG------QHQIWEYNISDGVTRVFSGDGYERNLN 730 (1057)
T ss_pred EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC------CCeEEEEECCCCeEEEEecCCccccCC
Confidence 65444210 000 011233332 6789987432 35688899887765433110
Q ss_pred ---CC--CCcc-eeEEEE-C-CEEEEEeccCCCCCCCceEEEEECCCCceEEcCC-CC---C--CCCCCCCC----CCCC
Q 012755 285 ---NL--PRKL-CSGFFM-D-GKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIEN-MY---P--SNVGTQSN----PAMS 346 (457)
Q Consensus 285 ---p~--~r~~-~~~~~~-~-g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~-~~---~--~~~~~~~~----~~~r 346 (457)
+. .... .++++. + +.|||.... .+.+.+||+.++.-..+.. .+ . ...|.... ....
T Consensus 731 g~~~~~~~~~~P~GIavspdG~~LYVADs~------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~ 804 (1057)
T PLN02919 731 GSSGTSTSFAQPSGISLSPDLKELYIADSE------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQ 804 (1057)
T ss_pred CCccccccccCccEEEEeCCCCEEEEEECC------CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhcc
Confidence 00 0011 122332 3 459987532 3578999998766432211 00 0 00000000 0011
Q ss_pred CCCEEEE-ECCEEEEEecCCCeEEEEECCCCcEEEeccCCCc---------cCCCCcceEEEEEeCCEEEEEcCcCCCCC
Q 012755 347 SPPLVAV-VNNQLYSADQATNVVKKYNKTNNSWTVVKRLPVR---------ANSFNGWGLAFKACGNSLLVIGGHRELQG 416 (457)
Q Consensus 347 ~~~~~~~-~~g~ly~~gg~~~~v~~Yd~~~~~W~~v~~~p~~---------~~~~~~~~~~~~~~~g~lyv~GG~~~~~~ 416 (457)
...++++ -+|.||+.....+.|.+||++++....+...... .....=.+++ +.-+|+|||....++
T Consensus 805 ~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIa-vd~dG~lyVaDt~Nn--- 880 (1057)
T PLN02919 805 HPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLA-LGENGRLFVADTNNS--- 880 (1057)
T ss_pred CCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEE-EeCCCCEEEEECCCC---
Confidence 1223333 3688999988888999999999888776542210 0000011222 234678999764432
Q ss_pred ceEEEEEeeCCCC
Q 012755 417 EIIVLHSWDPTDG 429 (457)
Q Consensus 417 ~~~~v~~y~~~~~ 429 (457)
.|.++|.++.
T Consensus 881 ---~Irvid~~~~ 890 (1057)
T PLN02919 881 ---LIRYLDLNKG 890 (1057)
T ss_pred ---EEEEEECCCC
Confidence 5777888764
No 121
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=89.81 E-value=17 Score=34.00 Aligned_cols=180 Identities=12% Similarity=0.081 Sum_probs=98.6
Q ss_pred CCEEEEEceecCCcEEEEEECC-----CCcEEeCCCCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCc--
Q 012755 205 GTQLLVFGRELSGFAIWMYSLI-----ANCWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGT-- 277 (457)
Q Consensus 205 ~~~lyv~GG~~~~~~v~~yd~~-----t~~W~~l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~-- 277 (457)
++++|++.+.... .+..|.-. .++..+.-.||.+-.+.+.++++|.+|---. ....+..||+.+++
T Consensus 30 ~~~iy~~~~~~~~-~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~------~s~~IvkydL~t~~v~ 102 (250)
T PF02191_consen 30 SEKIYVTSGFSGN-TVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKY------NSRNIVKYDLTTRSVV 102 (250)
T ss_pred CCCEEEECccCCC-EEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEec------CCceEEEEECcCCcEE
Confidence 4567777665433 56655432 2223333345666677778889998887633 25789999999987
Q ss_pred -EEECCCCCCC---------CcceeEEEECCEEEEEeccCCCCCCCceEEEEECCCC----ceEEcCCCCCCCCCCCCCC
Q 012755 278 -WETLPDMNLP---------RKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETR----TWKRIENMYPSNVGTQSNP 343 (457)
Q Consensus 278 -W~~~~~~p~~---------r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~----~W~~~~~~~~~~~~~~~~~ 343 (457)
|..+|..... -.....++-++-|+|+-...... -.-.+-..|+.+- +|..- .+
T Consensus 103 ~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~-g~ivvskld~~tL~v~~tw~T~--~~---------- 169 (250)
T PF02191_consen 103 ARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNN-GNIVVSKLDPETLSVEQTWNTS--YP---------- 169 (250)
T ss_pred EEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCC-CcEEEEeeCcccCceEEEEEec--cC----------
Confidence 5555432111 11223445555677774433221 1123455666643 56532 22
Q ss_pred CCCCCCEEEEECCEEEEEecC----CCeEEEEECCCCcEEEeccCCCccCCCCcceEEEEEe---CCEEEEEc
Q 012755 344 AMSSPPLVAVVNNQLYSADQA----TNVVKKYNKTNNSWTVVKRLPVRANSFNGWGLAFKAC---GNSLLVIG 409 (457)
Q Consensus 344 ~~r~~~~~~~~~g~ly~~gg~----~~~v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~---~g~lyv~G 409 (457)
.+....+..+.|.||++... ..-.+.||..+++=..+ .++-..... ..+.+.+ +.+||+.-
T Consensus 170 -k~~~~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~-~i~f~~~~~---~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 170 -KRSAGNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDV-SIPFPNPYG---NISMLSYNPRDKKLYAWD 237 (250)
T ss_pred -chhhcceeeEeeEEEEEEECCCCCcEEEEEEECCCCceece-eeeeccccC---ceEeeeECCCCCeEEEEE
Confidence 22233356678999999753 23457899988765433 233322211 1233333 56777753
No 122
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=89.29 E-value=13 Score=34.73 Aligned_cols=142 Identities=23% Similarity=0.226 Sum_probs=80.9
Q ss_pred CCEEEEEeccCCCCCCCceEEEEECCC-----CceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEE
Q 012755 297 DGKFYIIGGMSSPTDPLTCGEEYNLET-----RTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQATNVVKKY 371 (457)
Q Consensus 297 ~g~iyv~GG~~~~~~~~~~~~~yd~~t-----~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~~~~v~~Y 371 (457)
++++|++.+..+. .+..|...+ +...+.-.+|. +-.+.+.++.+|.+|.--.....|.+|
T Consensus 30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~~Lp~----------~~~GtG~vVYngslYY~~~~s~~Ivky 94 (250)
T PF02191_consen 30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTYKLPY----------PWQGTGHVVYNGSLYYNKYNSRNIVKY 94 (250)
T ss_pred CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceEEEEec----------eeccCCeEEECCcEEEEecCCceEEEE
Confidence 4688998775432 455554332 22333323333 455667888999999988788999999
Q ss_pred ECCCCc---EEEeccCCCccCCC----CcceEEEEEeCCEEEEEcCcCCCCCceEEEEEeeCCCCCCCCCCeeEeccccc
Q 012755 372 NKTNNS---WTVVKRLPVRANSF----NGWGLAFKACGNSLLVIGGHRELQGEIIVLHSWDPTDGNSGEAQWNELAVRER 444 (457)
Q Consensus 372 d~~~~~---W~~v~~~p~~~~~~----~~~~~~~~~~~g~lyv~GG~~~~~~~~~~v~~y~~~~~~w~~~~W~~l~~~~~ 444 (457)
|..++. |..++......... ...-+-+++-.+-|+|+-......+. ..+-..||++=. -..+|..--..+.
T Consensus 95 dL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~-ivvskld~~tL~-v~~tw~T~~~k~~ 172 (250)
T PF02191_consen 95 DLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGN-IVVSKLDPETLS-VEQTWNTSYPKRS 172 (250)
T ss_pred ECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCc-EEEEeeCcccCc-eEEEEEeccCchh
Confidence 999885 44443221110000 01113344556667777655544332 345555776510 1226875445566
Q ss_pred cCceEEeeeee
Q 012755 445 AGAFVYNCAVM 455 (457)
Q Consensus 445 ~~~~~~~~~~~ 455 (457)
++..+..|.+.
T Consensus 173 ~~naFmvCGvL 183 (250)
T PF02191_consen 173 AGNAFMVCGVL 183 (250)
T ss_pred hcceeeEeeEE
Confidence 77777777653
No 123
>smart00284 OLF Olfactomedin-like domains.
Probab=89.28 E-value=16 Score=34.22 Aligned_cols=158 Identities=17% Similarity=0.220 Sum_probs=86.6
Q ss_pred CCCcEEECCCCCCCCcceeEEEECCEEEEEeccCCCCCCCceEEEEEC----CCCceEEcCCCCCCCCCCCCCCCCCCCC
Q 012755 274 ELGTWETLPDMNLPRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNL----ETRTWKRIENMYPSNVGTQSNPAMSSPP 349 (457)
Q Consensus 274 ~t~~W~~~~~~p~~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~----~t~~W~~~~~~~~~~~~~~~~~~~r~~~ 349 (457)
+-+.|.+=|..+.+. ++++|++.+... ..+.+..|.. ..+.+.+.-.+|. ...+.
T Consensus 19 ~~GaWmkD~~~~~~~--------~~~~wv~~~~~~---~~~~v~ey~~~~~f~~~~~~~~~~Lp~----------~~~Gt 77 (255)
T smart00284 19 KSGAWMKDPLWNTTK--------KSLYWYMPLNTR---VLRSVREYSSMSDFQMGKNPTDHPLPH----------AGQGT 77 (255)
T ss_pred ccceeecCCCCCCCC--------CceEEEEccccC---CCcEEEEecCHHHHhccCCceEEECCC----------ccccc
Confidence 456676544332221 478888866531 2344556633 3334433333333 45667
Q ss_pred EEEEECCEEEEEecCCCeEEEEECCCCcEEEeccCCCcc---CCCCcc----eEEEEEeCCEEEEEcCcCCCCCceEEEE
Q 012755 350 LVAVVNNQLYSADQATNVVKKYNKTNNSWTVVKRLPVRA---NSFNGW----GLAFKACGNSLLVIGGHRELQGEIIVLH 422 (457)
Q Consensus 350 ~~~~~~g~ly~~gg~~~~v~~Yd~~~~~W~~v~~~p~~~---~~~~~~----~~~~~~~~g~lyv~GG~~~~~~~~~~v~ 422 (457)
+.++.+|.+|.--.....|.+||..+++=.....+|... .....+ -+-+++-.+-|+|+=......+ ...+-
T Consensus 78 G~VVYngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g-~ivvS 156 (255)
T smart00284 78 GVVVYNGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAG-KIVIS 156 (255)
T ss_pred cEEEECceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCC-CEEEE
Confidence 789999999998777789999999998655444444321 111111 1334455556666643333322 23445
Q ss_pred EeeCCCCCCCCCCeeEeccccccCceEEeeee
Q 012755 423 SWDPTDGNSGEAQWNELAVRERAGAFVYNCAV 454 (457)
Q Consensus 423 ~y~~~~~~w~~~~W~~l~~~~~~~~~~~~~~~ 454 (457)
..||++=. -..+|..--.++.++-.+.-|.+
T Consensus 157 kLnp~tL~-ve~tW~T~~~k~sa~naFmvCGv 187 (255)
T smart00284 157 KLNPATLT-IENTWITTYNKRSASNAFMICGI 187 (255)
T ss_pred eeCcccce-EEEEEEcCCCcccccccEEEeeE
Confidence 55775510 11268764455567766666655
No 124
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=89.25 E-value=16 Score=36.93 Aligned_cols=43 Identities=9% Similarity=0.093 Sum_probs=30.2
Q ss_pred cCCCeEEEEECCCCcEEEeccCCCccCCCCcceEEEEEeCCEEEEEcCcC
Q 012755 363 QATNVVKKYNKTNNSWTVVKRLPVRANSFNGWGLAFKACGNSLLVIGGHR 412 (457)
Q Consensus 363 g~~~~v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~ 412 (457)
|..+.+|.=.-...+.+++-.|+...++ -+.++++||.+..++
T Consensus 203 GtrGklWis~d~g~tFeK~vdl~~~vS~-------PmIV~~RvYFlsD~e 245 (668)
T COG4946 203 GTRGKLWISSDGGKTFEKFVDLDGNVSS-------PMIVGERVYFLSDHE 245 (668)
T ss_pred CccceEEEEecCCcceeeeeecCCCcCC-------ceEEcceEEEEeccc
Confidence 4567788877777788888888766542 235688888886443
No 125
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=88.82 E-value=16 Score=40.19 Aligned_cols=34 Identities=12% Similarity=0.129 Sum_probs=23.9
Q ss_pred eeEEEECCEEEEEeccCCCCCCCceEEEEECCCCc--eEEcCC
Q 012755 291 CSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRT--WKRIEN 331 (457)
Q Consensus 291 ~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~ 331 (457)
.+-++++|+||+... .+.++++|.+|++ |+.-..
T Consensus 188 ~TPlvvgg~lYv~t~-------~~~V~ALDa~TGk~lW~~d~~ 223 (764)
T TIGR03074 188 ATPLKVGDTLYLCTP-------HNKVIALDAATGKEKWKFDPK 223 (764)
T ss_pred cCCEEECCEEEEECC-------CCeEEEEECCCCcEEEEEcCC
Confidence 445678999999732 3568888888764 875543
No 126
>PLN00181 protein SPA1-RELATED; Provisional
Probab=88.55 E-value=45 Score=37.03 Aligned_cols=146 Identities=12% Similarity=0.082 Sum_probs=71.1
Q ss_pred CCEEEEEceecCCcEEEEEECCCCcEEeCCCCCCCccceeEEe--eCCEEEEEeeecCCCCccceEEEEeCCCCc--EEE
Q 012755 205 GTQLLVFGRELSGFAIWMYSLIANCWSKCPQMNLPRCLFGSSS--LGEVAIVAGGTDKNGCILKSAELYNSELGT--WET 280 (457)
Q Consensus 205 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~ 280 (457)
++.+++.|+.+ ..+.+||..++.-.. .+.......++.. -++..++.|+.+ ..+.+||..+.. ...
T Consensus 587 ~~~~L~Sgs~D--g~v~iWd~~~~~~~~--~~~~~~~v~~v~~~~~~g~~latgs~d------g~I~iwD~~~~~~~~~~ 656 (793)
T PLN00181 587 DPTLLASGSDD--GSVKLWSINQGVSIG--TIKTKANICCVQFPSESGRSLAFGSAD------HKVYYYDLRNPKLPLCT 656 (793)
T ss_pred CCCEEEEEcCC--CEEEEEECCCCcEEE--EEecCCCeEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCCccceE
Confidence 45666667643 358888887653211 1111111111211 246677777643 468889987643 222
Q ss_pred CCCCCCCCcceeEEEECCEEEEEeccCCCCCCCceEEEEECCCC----ceEEcCCCCCCCCCCCCCCCCCCCCEEEEECC
Q 012755 281 LPDMNLPRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETR----TWKRIENMYPSNVGTQSNPAMSSPPLVAVVNN 356 (457)
Q Consensus 281 ~~~~p~~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~----~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g 356 (457)
+..-. ..-..+...++..++.|+.+ ..+..||+.+. .|..+..... .. ..........++
T Consensus 657 ~~~h~--~~V~~v~f~~~~~lvs~s~D------~~ikiWd~~~~~~~~~~~~l~~~~g-------h~-~~i~~v~~s~~~ 720 (793)
T PLN00181 657 MIGHS--KTVSYVRFVDSSTLVSSSTD------NTLKLWDLSMSISGINETPLHSFMG-------HT-NVKNFVGLSVSD 720 (793)
T ss_pred ecCCC--CCEEEEEEeCCCEEEEEECC------CEEEEEeCCCCccccCCcceEEEcC-------CC-CCeeEEEEcCCC
Confidence 21111 11122333466666666543 34677887643 2332222111 00 011111223357
Q ss_pred EEEEEecCCCeEEEEECCCC
Q 012755 357 QLYSADQATNVVKKYNKTNN 376 (457)
Q Consensus 357 ~ly~~gg~~~~v~~Yd~~~~ 376 (457)
.+++.|+..+.+..|+....
T Consensus 721 ~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 721 GYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CEEEEEeCCCEEEEEECCCC
Confidence 77777888889999987644
No 127
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=88.17 E-value=29 Score=34.44 Aligned_cols=201 Identities=12% Similarity=0.037 Sum_probs=106.2
Q ss_pred ccEEEEEecCccEEEEeCCCCc--EEeCCCCCCCccccCCCeeeEEeCCEEEEEceecCCcEEEEEECCC--CcEEeCCC
Q 012755 160 EHWVYLACILMPWEAFDPLRQR--WMRLPRMQCDECFTSADKESLAVGTQLLVFGRELSGFAIWMYSLIA--NCWSKCPQ 235 (457)
Q Consensus 160 ~~~l~~~~~~~~~~~ydp~~~~--W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t--~~W~~l~~ 235 (457)
++.+|+......+.++|+.+.+ |......-..... ......+|+||+-.... .++++|..+ ..|+.-.+
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~----~~~~~~~G~i~~g~~~g---~~y~ld~~~G~~~W~~~~~ 140 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLS----GPILGSDGKIYVGSWDG---KLYALDASTGTLVWSRNVG 140 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceecc----CceEEeCCeEEEecccc---eEEEEECCCCcEEEEEecC
Confidence 6677776445578999999886 8543321000001 11233477877754332 789999964 46876433
Q ss_pred CCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCc--EEECCCC-CCCCcceeEEEECCEEEEEeccCCCCCC
Q 012755 236 MNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGT--WETLPDM-NLPRKLCSGFFMDGKFYIIGGMSSPTDP 312 (457)
Q Consensus 236 lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~-p~~r~~~~~~~~~g~iyv~GG~~~~~~~ 312 (457)
.. ++..-..+..++.+|+.. ....++.+|..+++ |+.-.+. ...+.....+..++.+|+-... .
T Consensus 141 ~~-~~~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~----~- 207 (370)
T COG1520 141 GS-PYYASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDG----Y- 207 (370)
T ss_pred CC-eEEecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCC----C-
Confidence 22 333223344566666642 13578888888765 8743222 2223333333667888875321 1
Q ss_pred CceEEEEECCCC--ceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEECCCC--cEEEecc
Q 012755 313 LTCGEEYNLETR--TWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQATNVVKKYNKTNN--SWTVVKR 383 (457)
Q Consensus 313 ~~~~~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~~~~v~~Yd~~~~--~W~~v~~ 383 (457)
...++.+|++++ .|+.-........... ..+......+..++.+|... ..+.+.++|..+. .|+.-..
T Consensus 208 ~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~--~~~~~~~~~v~v~~~~~~~~-~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 208 DGILYALNAEDGTLKWSQKVSQTIGRTAIS--TTPAVDGGPVYVDGGVYAGS-YGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred cceEEEEEccCCcEeeeeeeecccCccccc--ccccccCceEEECCcEEEEe-cCCeEEEEEcCCCceEEEEecc
Confidence 226888999876 4875322222000000 01222333444555554433 3455888887765 5876543
No 128
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=87.75 E-value=30 Score=34.05 Aligned_cols=165 Identities=15% Similarity=0.222 Sum_probs=81.3
Q ss_pred CCEEEEEeeecCCCCccceEEEEeCCCCc--EEECCC--CCCCCc-ceeEEEEC-CEEEEEeccCCCCCCCceEEEEECC
Q 012755 249 GEVAIVAGGTDKNGCILKSAELYNSELGT--WETLPD--MNLPRK-LCSGFFMD-GKFYIIGGMSSPTDPLTCGEEYNLE 322 (457)
Q Consensus 249 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~--~p~~r~-~~~~~~~~-g~iyv~GG~~~~~~~~~~~~~yd~~ 322 (457)
+..+||..- -...+++|+...+. ...... ++..-. .|.+..-+ ..+||+.. ..+.+.+|+..
T Consensus 155 g~~v~v~dl------G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e------~s~~v~v~~~~ 222 (345)
T PF10282_consen 155 GRFVYVPDL------GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNE------LSNTVSVFDYD 222 (345)
T ss_dssp SSEEEEEET------TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEET------TTTEEEEEEEE
T ss_pred CCEEEEEec------CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecC------CCCcEEEEeec
Confidence 456777631 13578888776655 544321 222111 22222223 46899864 34455555544
Q ss_pred --CCceEEcCCCCCCCCCCCCCCCCC-CCCEEEEE--CCEEEEEecCCCeEEEEEC--CCCcEEEeccCCCccCCCCcce
Q 012755 323 --TRTWKRIENMYPSNVGTQSNPAMS-SPPLVAVV--NNQLYSADQATNVVKKYNK--TNNSWTVVKRLPVRANSFNGWG 395 (457)
Q Consensus 323 --t~~W~~~~~~~~~~~~~~~~~~~r-~~~~~~~~--~g~ly~~gg~~~~v~~Yd~--~~~~W~~v~~~p~~~~~~~~~~ 395 (457)
++.++.+......+. ..... ....++.. +..||+.....+.|.+|+. ++++-+.+...+.....++ +
T Consensus 223 ~~~g~~~~~~~~~~~~~----~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr--~ 296 (345)
T PF10282_consen 223 PSDGSLTEIQTISTLPE----GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPR--H 296 (345)
T ss_dssp TTTTEEEEEEEEESCET----TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEE--E
T ss_pred ccCCceeEEEEeeeccc----cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCcc--E
Confidence 777776654332110 11111 22223333 3468888767788888887 4567777765554222111 2
Q ss_pred EEEEEeCCEEEEEcCcCCCCCceEEEEEeeCCCCCCCCCCeeEec
Q 012755 396 LAFKACGNSLLVIGGHRELQGEIIVLHSWDPTDGNSGEAQWNELA 440 (457)
Q Consensus 396 ~~~~~~~g~lyv~GG~~~~~~~~~~v~~y~~~~~~w~~~~W~~l~ 440 (457)
+++...+..|||..... ....++..|++++ .+..+.
T Consensus 297 ~~~s~~g~~l~Va~~~s----~~v~vf~~d~~tG-----~l~~~~ 332 (345)
T PF10282_consen 297 FAFSPDGRYLYVANQDS----NTVSVFDIDPDTG-----KLTPVG 332 (345)
T ss_dssp EEE-TTSSEEEEEETTT----TEEEEEEEETTTT-----EEEEEE
T ss_pred EEEeCCCCEEEEEecCC----CeEEEEEEeCCCC-----cEEEec
Confidence 33323445566654333 1235555577775 455554
No 129
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=87.21 E-value=21 Score=31.84 Aligned_cols=59 Identities=15% Similarity=0.284 Sum_probs=36.9
Q ss_pred CCEEEEEecCCCeEEEEECCCCcEEE-----e----ccCCCccCCCCcceEEEEEeCCEEEEEcCcCCCCCceEEEEEee
Q 012755 355 NNQLYSADQATNVVKKYNKTNNSWTV-----V----KRLPVRANSFNGWGLAFKACGNSLLVIGGHRELQGEIIVLHSWD 425 (457)
Q Consensus 355 ~g~ly~~gg~~~~v~~Yd~~~~~W~~-----v----~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~~~~~~v~~y~ 425 (457)
++++|++.| +..|.||...++-.. + ..+|... -+++...++++|+|-|. ..+.||
T Consensus 110 ~~~~yfFkg--~~y~ry~~~~~~v~~~yP~~i~~~w~g~p~~i------daa~~~~~~~~yfF~g~--------~y~~~d 173 (194)
T cd00094 110 NGKTYFFKG--DKYWRYDEKTQKMDPGYPKLIETDFPGVPDKV------DAAFRWLDGYYYFFKGD--------QYWRFD 173 (194)
T ss_pred CCEEEEEeC--CEEEEEeCCCccccCCCCcchhhcCCCcCCCc------ceeEEeCCCcEEEEECC--------EEEEEe
Confidence 689999976 688999976654321 0 1222211 13333334899999876 388888
Q ss_pred CCCC
Q 012755 426 PTDG 429 (457)
Q Consensus 426 ~~~~ 429 (457)
..+.
T Consensus 174 ~~~~ 177 (194)
T cd00094 174 PRSK 177 (194)
T ss_pred Cccc
Confidence 8764
No 130
>PRK13684 Ycf48-like protein; Provisional
Probab=86.83 E-value=33 Score=33.64 Aligned_cols=214 Identities=12% Similarity=0.132 Sum_probs=97.5
Q ss_pred EEEEEecCccEEEEeCCCCcEEeCCC-CCCCccccCCCeeeEEeCCEEEEEceecCCcEEEEEECCCCcEEeCCCC-CCC
Q 012755 162 WVYLACILMPWEAFDPLRQRWMRLPR-MQCDECFTSADKESLAVGTQLLVFGRELSGFAIWMYSLIANCWSKCPQM-NLP 239 (457)
Q Consensus 162 ~l~~~~~~~~~~~ydp~~~~W~~l~~-~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~l~~l-p~~ 239 (457)
..++++....++.=.-.-.+|++... +|....... .+...++..++.|.. ..++.=+-.-.+|+++... ..+
T Consensus 58 ~g~avG~~G~il~T~DgG~tW~~~~~~~~~~~~~l~---~v~~~~~~~~~~G~~---g~i~~S~DgG~tW~~~~~~~~~~ 131 (334)
T PRK13684 58 HGWLVGSNRTLLETNDGGETWEERSLDLPEENFRLI---SISFKGDEGWIVGQP---SLLLHTTDGGKNWTRIPLSEKLP 131 (334)
T ss_pred cEEEEECCCEEEEEcCCCCCceECccCCccccccee---eeEEcCCcEEEeCCC---ceEEEECCCCCCCeEccCCcCCC
Confidence 33444433333332233558988653 221111111 123335556665522 2344433345589988532 122
Q ss_pred ccceeEEee-CCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCcceeEEEECCEEEEEeccCCCCCCCceEEE
Q 012755 240 RCLFGSSSL-GEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEE 318 (457)
Q Consensus 240 r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~ 318 (457)
...+.+..+ ++.+|+.|.. ..+++=+-.-++|+.+...... ....+....+..|++.|..+ .++.
T Consensus 132 ~~~~~i~~~~~~~~~~~g~~-------G~i~~S~DgG~tW~~~~~~~~g-~~~~i~~~~~g~~v~~g~~G------~i~~ 197 (334)
T PRK13684 132 GSPYLITALGPGTAEMATNV-------GAIYRTTDGGKNWEALVEDAAG-VVRNLRRSPDGKYVAVSSRG------NFYS 197 (334)
T ss_pred CCceEEEEECCCcceeeecc-------ceEEEECCCCCCceeCcCCCcc-eEEEEEECCCCeEEEEeCCc------eEEE
Confidence 222333333 3445555431 2344434445789988543322 23334444444445433222 1222
Q ss_pred -EECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEE-ECCEEEEEecCCCeEEEE--ECCCCcEEEeccCCCccCCCCcc
Q 012755 319 -YNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAV-VNNQLYSADQATNVVKKY--NKTNNSWTVVKRLPVRANSFNGW 394 (457)
Q Consensus 319 -yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~g~ly~~gg~~~~v~~Y--d~~~~~W~~v~~~p~~~~~~~~~ 394 (457)
.|....+|+.+.... .+....++. -+++++++|.. +.+ .+ +-...+|+.+. .|...... ..
T Consensus 198 s~~~gg~tW~~~~~~~-----------~~~l~~i~~~~~g~~~~vg~~-G~~-~~~s~d~G~sW~~~~-~~~~~~~~-~l 262 (334)
T PRK13684 198 TWEPGQTAWTPHQRNS-----------SRRLQSMGFQPDGNLWMLARG-GQI-RFNDPDDLESWSKPI-IPEITNGY-GY 262 (334)
T ss_pred EcCCCCCeEEEeeCCC-----------cccceeeeEcCCCCEEEEecC-CEE-EEccCCCCCcccccc-CCcccccc-ce
Confidence 244456799885432 233333333 36788888743 333 34 23445899764 33221111 11
Q ss_pred eEEEE-EeCCEEEEEcCc
Q 012755 395 GLAFK-ACGNSLLVIGGH 411 (457)
Q Consensus 395 ~~~~~-~~~g~lyv~GG~ 411 (457)
.++. .-++.++++|..
T Consensus 263 -~~v~~~~~~~~~~~G~~ 279 (334)
T PRK13684 263 -LDLAYRTPGEIWAGGGN 279 (334)
T ss_pred -eeEEEcCCCCEEEEcCC
Confidence 1122 236688888754
No 131
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=86.54 E-value=32 Score=33.21 Aligned_cols=245 Identities=15% Similarity=0.209 Sum_probs=101.5
Q ss_pred cEEEEEecCccEEEEeCCCCcEEeCCCCCCCccccCCCeeeEEeCCEEEEEceecCCcEEEEEECCCCcEEeCC-CCCCC
Q 012755 161 HWVYLACILMPWEAFDPLRQRWMRLPRMQCDECFTSADKESLAVGTQLLVFGRELSGFAIWMYSLIANCWSKCP-QMNLP 239 (457)
Q Consensus 161 ~~l~~~~~~~~~~~ydp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~l~-~lp~~ 239 (457)
..-|+++....+..=+-.-.+|.....-.......+. ..+...++..|++|.. .-++.-.-.-.+|++++ +.+.|
T Consensus 28 ~~G~~VG~~g~il~T~DGG~tW~~~~~~~~~~~~~~l-~~I~f~~~~g~ivG~~---g~ll~T~DgG~tW~~v~l~~~lp 103 (302)
T PF14870_consen 28 NHGWAVGAYGTILKTTDGGKTWQPVSLDLDNPFDYHL-NSISFDGNEGWIVGEP---GLLLHTTDGGKTWERVPLSSKLP 103 (302)
T ss_dssp S-EEEEETTTEEEEESSTTSS-EE-----S-----EE-EEEEEETTEEEEEEET---TEEEEESSTTSS-EE----TT-S
T ss_pred CEEEEEecCCEEEEECCCCccccccccCCCccceeeE-EEEEecCCceEEEcCC---ceEEEecCCCCCcEEeecCCCCC
Confidence 3445555444443333345689887632221111111 1133457888887642 13444444567899985 22334
Q ss_pred ccceeEEee-CCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCcceeEE-EECCEEEEEeccCCCCCCCceEE
Q 012755 240 RCLFGSSSL-GEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGF-FMDGKFYIIGGMSSPTDPLTCGE 317 (457)
Q Consensus 240 r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~g~iyv~GG~~~~~~~~~~~~ 317 (457)
-..+.+..+ ++.++++|.. ..++.=.-.-.+|+.+..-...- ...+. .-+|++.+++.. + +-..
T Consensus 104 gs~~~i~~l~~~~~~l~~~~-------G~iy~T~DgG~tW~~~~~~~~gs-~~~~~r~~dG~~vavs~~-G-----~~~~ 169 (302)
T PF14870_consen 104 GSPFGITALGDGSAELAGDR-------GAIYRTTDGGKTWQAVVSETSGS-INDITRSSDGRYVAVSSR-G-----NFYS 169 (302)
T ss_dssp S-EEEEEEEETTEEEEEETT---------EEEESSTTSSEEEEE-S-----EEEEEE-TTS-EEEEETT-S-----SEEE
T ss_pred CCeeEEEEcCCCcEEEEcCC-------CcEEEeCCCCCCeeEcccCCcce-eEeEEECCCCcEEEEECc-c-----cEEE
Confidence 444555444 5566666431 23444334456799874322221 12222 235665555422 1 2334
Q ss_pred EEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEE-EECCEEEEEecCCCeEEEEE--CCCCcEEEeccCCCccCCCCcc
Q 012755 318 EYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVA-VVNNQLYSADQATNVVKKYN--KTNNSWTVVKRLPVRANSFNGW 394 (457)
Q Consensus 318 ~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~g~ly~~gg~~~~v~~Yd--~~~~~W~~v~~~p~~~~~~~~~ 394 (457)
..|+-...|+....... |.-..+. .-++.|+++. .-..++.=+ -...+|.+.. .|.... ++
T Consensus 170 s~~~G~~~w~~~~r~~~-----------~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~-~~~~~~---~~ 233 (302)
T PF14870_consen 170 SWDPGQTTWQPHNRNSS-----------RRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPI-IPIKTN---GY 233 (302)
T ss_dssp EE-TT-SS-EEEE--SS-----------S-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B--TTSS-----S
T ss_pred EecCCCccceEEccCcc-----------ceehhceecCCCCEEEEe-CCcEEEEccCCCCcccccccc-CCcccC---ce
Confidence 57888888998765433 2222333 3377888876 445666665 3445788732 222121 34
Q ss_pred eEEEEEe--CCEEEEEcCcCCCCCceEEEEEeeCCCCCCCCCCeeEecc----ccccCceEEe
Q 012755 395 GLAFKAC--GNSLLVIGGHRELQGEIIVLHSWDPTDGNSGEAQWNELAV----RERAGAFVYN 451 (457)
Q Consensus 395 ~~~~~~~--~g~lyv~GG~~~~~~~~~~v~~y~~~~~~w~~~~W~~l~~----~~~~~~~~~~ 451 (457)
++--+++ ++.+++.||... + |...+ +..+|++... |.++..+++.
T Consensus 234 ~~ld~a~~~~~~~wa~gg~G~-------l--~~S~D---gGktW~~~~~~~~~~~n~~~i~f~ 284 (302)
T PF14870_consen 234 GILDLAYRPPNEIWAVGGSGT-------L--LVSTD---GGKTWQKDRVGENVPSNLYRIVFV 284 (302)
T ss_dssp -EEEEEESSSS-EEEEESTT--------E--EEESS---TTSS-EE-GGGTTSSS---EEEEE
T ss_pred eeEEEEecCCCCEEEEeCCcc-------E--EEeCC---CCccceECccccCCCCceEEEEEc
Confidence 3222222 578999998641 2 22222 3348998854 5556655553
No 132
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=85.96 E-value=29 Score=32.18 Aligned_cols=174 Identities=10% Similarity=0.081 Sum_probs=83.7
Q ss_pred EeCCCCcEEeCCC-----CCCCccccCCCeeeEEeCCEEEEEceecCCcEEEEEECCCCcEEeCCCCCCCccceeEEe--
Q 012755 175 FDPLRQRWMRLPR-----MQCDECFTSADKESLAVGTQLLVFGRELSGFAIWMYSLIANCWSKCPQMNLPRCLFGSSS-- 247 (457)
Q Consensus 175 ydp~~~~W~~l~~-----~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~-- 247 (457)
||...+-|..... ++.+..... .-.+..+++.+..+|. ..+-.||..++.=..+..+-.++.+-.++.
T Consensus 18 YDhTIRfWqa~tG~C~rTiqh~dsqVN--rLeiTpdk~~LAaa~~---qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~ 92 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICSRTIQHPDSQVN--RLEITPDKKDLAAAGN---QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQ 92 (311)
T ss_pred CcceeeeeehhcCeEEEEEecCcccee--eEEEcCCcchhhhccC---CeeEEEEccCCCCCceeEEeccCCceEEEEEe
Confidence 7777777765543 222211111 1123335555555553 357889988764221111112223333332
Q ss_pred eCCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCcceeEEEECCEEEEEeccCCCCCCCceEEEEECCCCceE
Q 012755 248 LGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWK 327 (457)
Q Consensus 248 ~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~ 327 (457)
.+++-...||.+ ..+-+.|.+.-.-++.-..+.+. .+++..-+.--++.|. ....+.++|+.++...
T Consensus 93 ~dgrWMyTgseD------gt~kIWdlR~~~~qR~~~~~spV--n~vvlhpnQteLis~d-----qsg~irvWDl~~~~c~ 159 (311)
T KOG0315|consen 93 CDGRWMYTGSED------GTVKIWDLRSLSCQRNYQHNSPV--NTVVLHPNQTELISGD-----QSGNIRVWDLGENSCT 159 (311)
T ss_pred ecCeEEEecCCC------ceEEEEeccCcccchhccCCCCc--ceEEecCCcceEEeec-----CCCcEEEEEccCCccc
Confidence 256666666643 34566676663333322222111 1222222222233222 2456899999999776
Q ss_pred EcCCCCCCCCCCCCCCCCCCCCEEE-EECCEEEEEecCCCeEEEEECCCC
Q 012755 328 RIENMYPSNVGTQSNPAMSSPPLVA-VVNNQLYSADQATNVVKKYNKTNN 376 (457)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~r~~~~~~-~~~g~ly~~gg~~~~v~~Yd~~~~ 376 (457)
... +|.. ...-.++. .-+|.+.+.....+..++++.-+.
T Consensus 160 ~~l-iPe~---------~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~ 199 (311)
T KOG0315|consen 160 HEL-IPED---------DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNH 199 (311)
T ss_pred ccc-CCCC---------CcceeeEEEcCCCcEEEEecCCccEEEEEccCC
Confidence 543 2220 11112233 337776666666778888877653
No 133
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=85.57 E-value=39 Score=33.23 Aligned_cols=187 Identities=12% Similarity=0.078 Sum_probs=91.5
Q ss_pred EEEeCCCCcEEeCCCCCCCccccCCCeeeEE--eCCEEEEEceec-CCcEEEEEE--CCCCcEEeCCCCCCCccceeEEe
Q 012755 173 EAFDPLRQRWMRLPRMQCDECFTSADKESLA--VGTQLLVFGREL-SGFAIWMYS--LIANCWSKCPQMNLPRCLFGSSS 247 (457)
Q Consensus 173 ~~ydp~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~lyv~GG~~-~~~~v~~yd--~~t~~W~~l~~lp~~r~~~~~~~ 247 (457)
+.||..+.++..+.......... .++. -++.||+..... ....+..|. ..+++.+.+...+..-...+...
T Consensus 18 ~~~d~~~g~l~~~~~~~~~~~Ps----~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~ 93 (345)
T PF10282_consen 18 FRFDEETGTLTLVQTVAEGENPS----WLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIA 93 (345)
T ss_dssp EEEETTTTEEEEEEEEEESSSEC----CEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEE
T ss_pred EEEcCCCCCceEeeeecCCCCCc----eEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEE
Confidence 55788888887665422111111 1222 356788775432 344555554 44567777655442222222233
Q ss_pred e---CCEEEEEeeecCCCCccceEEEEeCCCC-cEEEC----------CCC-CCC-CcceeEEEE-C-CEEEEEeccCCC
Q 012755 248 L---GEVAIVAGGTDKNGCILKSAELYNSELG-TWETL----------PDM-NLP-RKLCSGFFM-D-GKFYIIGGMSSP 309 (457)
Q Consensus 248 ~---~~~iyv~GG~~~~~~~~~~v~~yd~~t~-~W~~~----------~~~-p~~-r~~~~~~~~-~-g~iyv~GG~~~~ 309 (457)
+ +..+|+.- +. ...+.+|+...+ +=... +.. ... -..|.+... + ..+|+..-
T Consensus 94 ~~~~g~~l~van-y~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl---- 163 (345)
T PF10282_consen 94 VDPDGRFLYVAN-YG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL---- 163 (345)
T ss_dssp ECTTSSEEEEEE-TT-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET----
T ss_pred EecCCCEEEEEE-cc-----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec----
Confidence 3 45566652 22 245677776653 21111 111 111 123444444 3 45777531
Q ss_pred CCCCceEEEEECCCCc--eEEcCCCCCCCCCCCCCCCCCCCCEEEEE-C-CEEEEEecCCCeEEEEECC--CCcEEEecc
Q 012755 310 TDPLTCGEEYNLETRT--WKRIENMYPSNVGTQSNPAMSSPPLVAVV-N-NQLYSADQATNVVKKYNKT--NNSWTVVKR 383 (457)
Q Consensus 310 ~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~-g~ly~~gg~~~~v~~Yd~~--~~~W~~v~~ 383 (457)
-.+.+.+|+..... .........++ ...+| .++.. + ..+|++....+.|.+|+.. +..++.+..
T Consensus 164 --G~D~v~~~~~~~~~~~l~~~~~~~~~~-----G~GPR---h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~ 233 (345)
T PF10282_consen 164 --GADRVYVYDIDDDTGKLTPVDSIKVPP-----GSGPR---HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQT 233 (345)
T ss_dssp --TTTEEEEEEE-TTS-TEEEEEEEECST-----TSSEE---EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred --CCCEEEEEEEeCCCceEEEeecccccc-----CCCCc---EEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEE
Confidence 14568888877665 65533221100 01122 23333 3 4789998777877777665 667776653
No 134
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=84.85 E-value=8.3 Score=37.47 Aligned_cols=133 Identities=11% Similarity=0.050 Sum_probs=79.1
Q ss_pred cEEEEEECCCC-----cEEeCCCCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCc-EEECCCCCCCCcce
Q 012755 218 FAIWMYSLIAN-----CWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGT-WETLPDMNLPRKLC 291 (457)
Q Consensus 218 ~~v~~yd~~t~-----~W~~l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~p~~r~~~ 291 (457)
..+.+|+.... +.+.+.....+-.-.+++.+++++.+..| ..+.+|+...+. +.....+..+-...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g--------~~l~v~~l~~~~~l~~~~~~~~~~~i~ 133 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG--------NKLYVYDLDNSKTLLKKAFYDSPFYIT 133 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET--------TEEEEEEEETTSSEEEEEEE-BSSSEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec--------CEEEEEEccCcccchhhheecceEEEE
Confidence 46888888874 55555433333334567778898666654 567888888777 88776665555666
Q ss_pred eEEEECCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEE-CCEEEEEecCCCeEE-
Q 012755 292 SGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVV-NNQLYSADQATNVVK- 369 (457)
Q Consensus 292 ~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~g~ly~~gg~~~~v~- 369 (457)
+..+.++.|++-.-. ..-.+..|+.+..+-..++.-.. ++...++..+ ++..++++...+.+.
T Consensus 134 sl~~~~~~I~vgD~~-----~sv~~~~~~~~~~~l~~va~d~~----------~~~v~~~~~l~d~~~~i~~D~~gnl~~ 198 (321)
T PF03178_consen 134 SLSVFKNYILVGDAM-----KSVSLLRYDEENNKLILVARDYQ----------PRWVTAAEFLVDEDTIIVGDKDGNLFV 198 (321)
T ss_dssp EEEEETTEEEEEESS-----SSEEEEEEETTTE-EEEEEEESS-----------BEEEEEEEE-SSSEEEEEETTSEEEE
T ss_pred EEeccccEEEEEEcc-----cCEEEEEEEccCCEEEEEEecCC----------CccEEEEEEecCCcEEEEEcCCCeEEE
Confidence 777888877764211 12244567887767777765433 3444445556 655555554555444
Q ss_pred -EEEC
Q 012755 370 -KYNK 373 (457)
Q Consensus 370 -~Yd~ 373 (457)
.|++
T Consensus 199 l~~~~ 203 (321)
T PF03178_consen 199 LRYNP 203 (321)
T ss_dssp EEE-S
T ss_pred EEECC
Confidence 4554
No 135
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=84.68 E-value=30 Score=31.28 Aligned_cols=185 Identities=15% Similarity=0.055 Sum_probs=103.2
Q ss_pred eEEeCCEEEEEceecCCcEEEEEECCCCc--EEe-CCCCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCc
Q 012755 201 SLAVGTQLLVFGRELSGFAIWMYSLIANC--WSK-CPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGT 277 (457)
Q Consensus 201 ~~~~~~~lyv~GG~~~~~~v~~yd~~t~~--W~~-l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~ 277 (457)
....++++|..-|....+.+.++|..+++ |.+ ++ |..-.+-+.+..++.+|..-=. ....+.||..|
T Consensus 51 L~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~--~~~~FgEGit~~gd~~y~LTw~------egvaf~~d~~t-- 120 (262)
T COG3823 51 LEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA--PDTVFGEGITKLGDYFYQLTWK------EGVAFKYDADT-- 120 (262)
T ss_pred eeeeCCEEEEeccccccceeEEEeccCceEEEEeecC--CccccccceeeccceEEEEEec------cceeEEEChHH--
Confidence 45568888887777777789999998765 433 33 2233556778889999987321 23456677643
Q ss_pred EEECCCCCCCCcceeEEEECCEEEEEeccCCCCCCCceEEEEECCCCceE---EcCCCCCCCCCCCCCCCCCCCCEEEEE
Q 012755 278 WETLPDMNLPRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWK---RIENMYPSNVGTQSNPAMSSPPLVAVV 354 (457)
Q Consensus 278 W~~~~~~p~~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~---~~~~~~~~~~~~~~~~~~r~~~~~~~~ 354 (457)
.+.+...+.+-.+.+.+.-+..+.+-.|. ..+..-||++-.=. .+..-.. | -+.---+--+
T Consensus 121 ~~~lg~~~y~GeGWgLt~d~~~LimsdGs-------atL~frdP~tfa~~~~v~VT~~g~--------p-v~~LNELE~V 184 (262)
T COG3823 121 LEELGRFSYEGEGWGLTSDDKNLIMSDGS-------ATLQFRDPKTFAELDTVQVTDDGV--------P-VSKLNELEWV 184 (262)
T ss_pred hhhhcccccCCcceeeecCCcceEeeCCc-------eEEEecCHHHhhhcceEEEEECCe--------e-cccccceeee
Confidence 33444444444445555555555443332 23444566542211 1111000 0 1111123345
Q ss_pred CCEEEEEecCCCeEEEEECCCC---cEEEeccCCCccCCCC-----cceEEEEEeCCEEEEEcCc
Q 012755 355 NNQLYSADQATNVVKKYNKTNN---SWTVVKRLPVRANSFN-----GWGLAFKACGNSLLVIGGH 411 (457)
Q Consensus 355 ~g~ly~~gg~~~~v~~Yd~~~~---~W~~v~~~p~~~~~~~-----~~~~~~~~~~g~lyv~GG~ 411 (457)
+|.+|.---....+.+.||+++ .|-.+.+++....... --|.|-..-++++|+.|-.
T Consensus 185 dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~ 249 (262)
T COG3823 185 DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKL 249 (262)
T ss_pred ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCc
Confidence 7788775555678889999988 5988887764432211 1134434446788887743
No 136
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=84.43 E-value=63 Score=34.74 Aligned_cols=145 Identities=11% Similarity=0.128 Sum_probs=78.1
Q ss_pred CEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCcceeEEEECCEEEEEeccCCCCCCCceEEEEECCCCceEEc
Q 012755 250 EVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRI 329 (457)
Q Consensus 250 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 329 (457)
|.-..+|+.. +..+.+|+-.++..-.-..-...+.......-+|.+.+.|+.+ ..+.+||...+.....
T Consensus 319 GDWiA~g~~k-----lgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eD------gKVKvWn~~SgfC~vT 387 (893)
T KOG0291|consen 319 GDWIAFGCSK-----LGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAED------GKVKVWNTQSGFCFVT 387 (893)
T ss_pred CCEEEEcCCc-----cceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCC------CcEEEEeccCceEEEE
Confidence 5555555532 4566777655555432222122233333334478888887654 3467788777654322
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEE--EECCEEEEEecCCCeEEEEECCCCc-EEEeccCCCccCCCCcceEEEEEeC--CE
Q 012755 330 ENMYPSNVGTQSNPAMSSPPLVA--VVNNQLYSADQATNVVKKYNKTNNS-WTVVKRLPVRANSFNGWGLAFKACG--NS 404 (457)
Q Consensus 330 ~~~~~~~~~~~~~~~~r~~~~~~--~~~g~ly~~gg~~~~v~~Yd~~~~~-W~~v~~~p~~~~~~~~~~~~~~~~~--g~ 404 (457)
-.- +..+.+++ ...|+..+-..--+.|..+|...-. .+.. ..|.+.. .+.++.+ |.
T Consensus 388 Fte------------Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTf-t~P~p~Q------fscvavD~sGe 448 (893)
T KOG0291|consen 388 FTE------------HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTF-TSPEPIQ------FSCVAVDPSGE 448 (893)
T ss_pred ecc------------CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeee-cCCCcee------eeEEEEcCCCC
Confidence 221 22233332 2355544444455688888887643 3332 2344332 2334445 88
Q ss_pred EEEEcCcCCCCCceEEEEEeeCCCC
Q 012755 405 LLVIGGHRELQGEIIVLHSWDPTDG 429 (457)
Q Consensus 405 lyv~GG~~~~~~~~~~v~~y~~~~~ 429 (457)
|++.|+.+. -+|++|+.+++
T Consensus 449 lV~AG~~d~-----F~IfvWS~qTG 468 (893)
T KOG0291|consen 449 LVCAGAQDS-----FEIFVWSVQTG 468 (893)
T ss_pred EEEeeccce-----EEEEEEEeecC
Confidence 999998763 26888888875
No 137
>PRK01742 tolB translocation protein TolB; Provisional
Probab=84.21 E-value=51 Score=33.49 Aligned_cols=163 Identities=10% Similarity=-0.036 Sum_probs=78.7
Q ss_pred CcEEEEEECCCCcEEeCCCCCCCccceeEEeeCC-EEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCcceeEEE
Q 012755 217 GFAIWMYSLIANCWSKCPQMNLPRCLFGSSSLGE-VAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFF 295 (457)
Q Consensus 217 ~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~ 295 (457)
...++++|..+++-+.+...+..-... .-.-++ +|++....++ ..+++.+|..++..+.+..-... .......
T Consensus 227 ~~~i~i~dl~tg~~~~l~~~~g~~~~~-~wSPDG~~La~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~~-~~~~~wS 300 (429)
T PRK01742 227 KSQLVVHDLRSGARKVVASFRGHNGAP-AFSPDGSRLAFASSKDG----VLNIYVMGANGGTPSQLTSGAGN-NTEPSWS 300 (429)
T ss_pred CcEEEEEeCCCCceEEEecCCCccCce-eECCCCCEEEEEEecCC----cEEEEEEECCCCCeEeeccCCCC-cCCEEEC
Confidence 357899999887766655443211111 112244 4444332222 24688899988887766432211 1111223
Q ss_pred ECCE-EEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCE-EEEEecCCCeEEEEEC
Q 012755 296 MDGK-FYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQ-LYSADQATNVVKKYNK 373 (457)
Q Consensus 296 ~~g~-iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~-ly~~gg~~~~v~~Yd~ 373 (457)
-+|+ |+......+ ...++.+|..+..-+.+.. . . .. ....-+|+ |++.++ ..++.+|.
T Consensus 301 pDG~~i~f~s~~~g----~~~I~~~~~~~~~~~~l~~--~----------~-~~-~~~SpDG~~ia~~~~--~~i~~~Dl 360 (429)
T PRK01742 301 PDGQSILFTSDRSG----SPQVYRMSASGGGASLVGG--R----------G-YS-AQISADGKTLVMING--DNVVKQDL 360 (429)
T ss_pred CCCCEEEEEECCCC----CceEEEEECCCCCeEEecC--C----------C-CC-ccCCCCCCEEEEEcC--CCEEEEEC
Confidence 3555 444432221 2355666665543333211 0 0 11 11222444 444433 56788999
Q ss_pred CCCcEEEeccCCCccCCCCcceEEEEEeCCEEEEEcCcC
Q 012755 374 TNNSWTVVKRLPVRANSFNGWGLAFKACGNSLLVIGGHR 412 (457)
Q Consensus 374 ~~~~W~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~ 412 (457)
.++.++.+..-.. . .... ..-+|+++++++..
T Consensus 361 ~~g~~~~lt~~~~-~-----~~~~-~sPdG~~i~~~s~~ 392 (429)
T PRK01742 361 TSGSTEVLSSTFL-D-----ESPS-ISPNGIMIIYSSTQ 392 (429)
T ss_pred CCCCeEEecCCCC-C-----CCce-ECCCCCEEEEEEcC
Confidence 9998887642211 1 1122 23467666666544
No 138
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=83.81 E-value=14 Score=36.04 Aligned_cols=98 Identities=12% Similarity=0.034 Sum_probs=50.4
Q ss_pred ccEEEEeCCCCcEEeCCCCCCCccccCCCeeeEEe-CCEEEEEcee-------cCCcEEEEEECCCCcEEe---CCCCCC
Q 012755 170 MPWEAFDPLRQRWMRLPRMQCDECFTSADKESLAV-GTQLLVFGRE-------LSGFAIWMYSLIANCWSK---CPQMNL 238 (457)
Q Consensus 170 ~~~~~ydp~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~lyv~GG~-------~~~~~v~~yd~~t~~W~~---l~~lp~ 238 (457)
..++++|..+.+-.-+ ++..... ..+++. +..+|+..-. ..+.-+.+||..|-+-.. +|+-
T Consensus 17 ~rv~viD~d~~k~lGm--i~~g~~~----~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k-- 88 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGM--IDTGFLG----NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPK-- 88 (342)
T ss_dssp EEEEEEETTTTEEEEE--EEEESSE----EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS--
T ss_pred ceEEEEECCCCcEEEE--eecccCC----ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCc--
Confidence 3566788877764221 1111111 112222 4566665421 123468999999885432 3431
Q ss_pred Ccc-------ceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEE
Q 012755 239 PRC-------LFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWET 280 (457)
Q Consensus 239 ~r~-------~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~ 280 (457)
+|. ..++..-+..+||.-- .+..++-+.|...++--.
T Consensus 89 ~R~~~~~~~~~~~ls~dgk~~~V~N~-----TPa~SVtVVDl~~~kvv~ 132 (342)
T PF06433_consen 89 PRAQVVPYKNMFALSADGKFLYVQNF-----TPATSVTVVDLAAKKVVG 132 (342)
T ss_dssp -B--BS--GGGEEE-TTSSEEEEEEE-----SSSEEEEEEETTTTEEEE
T ss_pred chheecccccceEEccCCcEEEEEcc-----CCCCeEEEEECCCCceee
Confidence 232 2222233556777622 456789999999988643
No 139
>PRK02889 tolB translocation protein TolB; Provisional
Probab=83.59 E-value=54 Score=33.30 Aligned_cols=183 Identities=8% Similarity=-0.001 Sum_probs=87.1
Q ss_pred CcEEEEEECCCCcEEeCCCCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCcceeEEEE
Q 012755 217 GFAIWMYSLIANCWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFM 296 (457)
Q Consensus 217 ~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 296 (457)
...++..|.....-+.+...+.+-..... .-+++.+++..... ....++++|..+++=+.+...+... ......-
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~~~v~~p~w-SPDG~~la~~s~~~---~~~~I~~~dl~~g~~~~l~~~~g~~-~~~~~SP 249 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSPEPIISPAW-SPDGTKLAYVSFES---KKPVVYVHDLATGRRRVVANFKGSN-SAPAWSP 249 (427)
T ss_pred ccEEEEECCCCCCceEeccCCCCcccceE-cCCCCEEEEEEccC---CCcEEEEEECCCCCEEEeecCCCCc-cceEECC
Confidence 45788888765444444322221111111 12443333333221 1356999999888755554433211 1112223
Q ss_pred CC-EEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCE-EEEEec--CCCeEEEEE
Q 012755 297 DG-KFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQ-LYSADQ--ATNVVKKYN 372 (457)
Q Consensus 297 ~g-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~-ly~~gg--~~~~v~~Yd 372 (457)
+| +|++....++ ...++.+|..++..+.+..... ....+ ...-+|+ |+.... ....++.+|
T Consensus 250 DG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~----------~~~~~-~wSpDG~~l~f~s~~~g~~~Iy~~~ 314 (427)
T PRK02889 250 DGRTLAVALSRDG----NSQIYTVNADGSGLRRLTQSSG----------IDTEP-FFSPDGRSIYFTSDRGGAPQIYRMP 314 (427)
T ss_pred CCCEEEEEEccCC----CceEEEEECCCCCcEECCCCCC----------CCcCe-EEcCCCCEEEEEecCCCCcEEEEEE
Confidence 55 4544333222 3568888988777666643211 11111 2233554 444332 234688888
Q ss_pred CCCCcEEEeccCCCccCCCCcceEEEEEeCC-EEEEEcCcCCCCCceEEEEEeeCCCC
Q 012755 373 KTNNSWTVVKRLPVRANSFNGWGLAFKACGN-SLLVIGGHRELQGEIIVLHSWDPTDG 429 (457)
Q Consensus 373 ~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~g-~lyv~GG~~~~~~~~~~v~~y~~~~~ 429 (457)
.+++..+.+..-. .. ....+. .-+| .|+......+ ...+++||..++
T Consensus 315 ~~~g~~~~lt~~g--~~---~~~~~~-SpDG~~Ia~~s~~~g----~~~I~v~d~~~g 362 (427)
T PRK02889 315 ASGGAAQRVTFTG--SY---NTSPRI-SPDGKLLAYISRVGG----AFKLYVQDLATG 362 (427)
T ss_pred CCCCceEEEecCC--CC---cCceEE-CCCCCEEEEEEccCC----cEEEEEEECCCC
Confidence 8887777764211 10 111222 2244 4444433221 126888887764
No 140
>PRK04043 tolB translocation protein TolB; Provisional
Probab=83.46 E-value=55 Score=33.27 Aligned_cols=151 Identities=6% Similarity=-0.059 Sum_probs=85.9
Q ss_pred CccEEEEeCCCCcEEeCCCCCCCccccCCCeeeEEeCC-EEEEEceecCCcEEEEEECCCCcEEeCCCCCCCccceeEEe
Q 012755 169 LMPWEAFDPLRQRWMRLPRMQCDECFTSADKESLAVGT-QLLVFGRELSGFAIWMYSLIANCWSKCPQMNLPRCLFGSSS 247 (457)
Q Consensus 169 ~~~~~~ydp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~-~lyv~GG~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~ 247 (457)
...++.+|..+++=..+...+..... .....++ .|++.-......++|.+|..+++++++...+..-.......
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g~~~~-----~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SP 286 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQGMLVV-----SDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVE 286 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCCcEEe-----eEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECC
Confidence 46788999887765555432211100 0133344 55544333345689999999999998865443111112222
Q ss_pred eCCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCcceeEEEECCEEEEEeccCCCCC---CCceEEEEECCCC
Q 012755 248 LGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFMDGKFYIIGGMSSPTD---PLTCGEEYNLETR 324 (457)
Q Consensus 248 ~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~iyv~GG~~~~~~---~~~~~~~yd~~t~ 324 (457)
-+.+||+.....+ ...++++|..+++.+++..-.. .. ....-+|+..++-....... ....++.+|+.++
T Consensus 287 DG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~g~--~~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g 359 (419)
T PRK04043 287 DDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFHGK--NN-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD 359 (419)
T ss_pred CCCEEEEEECCCC----CceEEEEECCCCCeEeCccCCC--cC-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC
Confidence 2556777654322 3589999999999877743211 12 23334555444333222111 1357889999999
Q ss_pred ceEEcCC
Q 012755 325 TWKRIEN 331 (457)
Q Consensus 325 ~W~~~~~ 331 (457)
.++.+..
T Consensus 360 ~~~~LT~ 366 (419)
T PRK04043 360 YIRRLTA 366 (419)
T ss_pred CeEECCC
Confidence 9988865
No 141
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=81.78 E-value=1.1e+02 Score=35.38 Aligned_cols=164 Identities=11% Similarity=0.083 Sum_probs=85.5
Q ss_pred eCCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCC----------CCC--cceeEEEE--CCEEEEEeccCCCCCCC
Q 012755 248 LGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMN----------LPR--KLCSGFFM--DGKFYIIGGMSSPTDPL 313 (457)
Q Consensus 248 ~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p----------~~r--~~~~~~~~--~g~iyv~GG~~~~~~~~ 313 (457)
.++.|||.. ...+.+.++|+....=..+.... .++ .-+++++- ++.|||.... .
T Consensus 578 ~~g~lyVaD------s~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~------n 645 (1057)
T PLN02919 578 LNNRLFISD------SNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE------N 645 (1057)
T ss_pred CCCeEEEEE------CCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC------C
Confidence 367899873 22467889998655433332210 111 12333433 4679997432 2
Q ss_pred ceEEEEECCCCceEEcCCCCCCC---CCCCC-C-CCCCCCCEEEEE--CCEEEEEecCCCeEEEEECCCCcEEEeccCCC
Q 012755 314 TCGEEYNLETRTWKRIENMYPSN---VGTQS-N-PAMSSPPLVAVV--NNQLYSADQATNVVKKYNKTNNSWTVVKRLPV 386 (457)
Q Consensus 314 ~~~~~yd~~t~~W~~~~~~~~~~---~~~~~-~-~~~r~~~~~~~~--~g~ly~~gg~~~~v~~Yd~~~~~W~~v~~~p~ 386 (457)
+.+.++|+.++.=+.+..-.... .+... . ........+++. ++.||+.....+.|++||+.++....+..-..
T Consensus 646 ~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~ 725 (1057)
T PLN02919 646 HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGY 725 (1057)
T ss_pred ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCc
Confidence 46788998887655553211000 00000 0 001122344443 68899998778899999998876654432100
Q ss_pred ----------ccCCCCcceEEEEEeCCEEEEEcCcCCCCCceEEEEEeeCCCC
Q 012755 387 ----------RANSFNGWGLAFKACGNSLLVIGGHRELQGEIIVLHSWDPTDG 429 (457)
Q Consensus 387 ----------~~~~~~~~~~~~~~~~g~lyv~GG~~~~~~~~~~v~~y~~~~~ 429 (457)
......-.++++...++.|||....+ ..|.+||++++
T Consensus 726 ~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n------~~Irv~D~~tg 772 (1057)
T PLN02919 726 ERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES------SSIRALDLKTG 772 (1057)
T ss_pred cccCCCCccccccccCccEEEEeCCCCEEEEEECCC------CeEEEEECCCC
Confidence 00000012233333345699876543 25888888763
No 142
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=81.29 E-value=61 Score=32.27 Aligned_cols=98 Identities=11% Similarity=0.066 Sum_probs=55.4
Q ss_pred CCcEEeCCCCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEECCC-----CCCC--CcceeEEEECCE
Q 012755 227 ANCWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPD-----MNLP--RKLCSGFFMDGK 299 (457)
Q Consensus 227 t~~W~~l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~-----~p~~--r~~~~~~~~~g~ 299 (457)
.+.|+.+..+. . ..--++.++|++|++.- ...++++|+.-. =.++.+ +... ......+...|+
T Consensus 189 ~~~Wt~l~~~~-~-~~~DIi~~kGkfYAvD~-------~G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~Gd 258 (373)
T PLN03215 189 GNVLKALKQMG-Y-HFSDIIVHKGQTYALDS-------IGIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGE 258 (373)
T ss_pred CCeeeEccCCC-c-eeeEEEEECCEEEEEcC-------CCeEEEEecCCc-eeeecceecccccCCcccCceeEEEECCE
Confidence 48999996422 2 23456788999999821 245666664211 111111 1111 122346677899
Q ss_pred EEEEeccCCCCC-----------CCceE--EEEECCCCceEEcCCCCC
Q 012755 300 FYIIGGMSSPTD-----------PLTCG--EEYNLETRTWKRIENMYP 334 (457)
Q Consensus 300 iyv~GG~~~~~~-----------~~~~~--~~yd~~t~~W~~~~~~~~ 334 (457)
++++..+..... ....+ +..|.++.+|.++..+..
T Consensus 259 LLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd 306 (373)
T PLN03215 259 LYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGD 306 (373)
T ss_pred EEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCC
Confidence 999877422110 11234 445888899999988653
No 143
>PRK03629 tolB translocation protein TolB; Provisional
Probab=81.05 E-value=68 Score=32.65 Aligned_cols=138 Identities=9% Similarity=0.022 Sum_probs=71.6
Q ss_pred ceEEEEeCCCCcEEECCCCCCCCcceeEEEECCE-EEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCC
Q 012755 266 KSAELYNSELGTWETLPDMNLPRKLCSGFFMDGK-FYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPA 344 (457)
Q Consensus 266 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~-iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~ 344 (457)
..++++|..+++-+.+...+..-. .....-+|+ |++.....+ ...++.+|.++++.+.+.....
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~~~-~~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~~~~---------- 287 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDGRS---------- 287 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCCcC-CeEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccCCCC----------
Confidence 578899998888777655443211 112223554 554432221 2358899999988877754321
Q ss_pred CCCCCEEEEECCE-EEEEec--CCCeEEEEECCCCcEEEeccCCCccCCCCcceEEEEEeCC-EEEEEcCcCCCCCceEE
Q 012755 345 MSSPPLVAVVNNQ-LYSADQ--ATNVVKKYNKTNNSWTVVKRLPVRANSFNGWGLAFKACGN-SLLVIGGHRELQGEIIV 420 (457)
Q Consensus 345 ~r~~~~~~~~~g~-ly~~gg--~~~~v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~g-~lyv~GG~~~~~~~~~~ 420 (457)
.... ....-+|+ |+.... ....++.+|+++..-+++....... ..... .-+| .|+..+...+ ...
T Consensus 288 ~~~~-~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~-----~~~~~-SpDG~~Ia~~~~~~g----~~~ 356 (429)
T PRK03629 288 NNTE-PTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQN-----QDADV-SSDGKFMVMVSSNGG----QQH 356 (429)
T ss_pred CcCc-eEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCc-----cCEEE-CCCCCEEEEEEccCC----Cce
Confidence 1111 12223554 433322 1347888899887766664221111 11222 2344 4544443322 136
Q ss_pred EEEeeCCCC
Q 012755 421 LHSWDPTDG 429 (457)
Q Consensus 421 v~~y~~~~~ 429 (457)
++++|.+++
T Consensus 357 I~~~dl~~g 365 (429)
T PRK03629 357 IAKQDLATG 365 (429)
T ss_pred EEEEECCCC
Confidence 888888775
No 144
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=79.86 E-value=66 Score=31.82 Aligned_cols=110 Identities=9% Similarity=-0.117 Sum_probs=62.3
Q ss_pred ccEEEEEecC-----ccEEEEeCCCCcEEeCCCCCCCccccCCCeeeEEe-CCEEEEEcee-------cCCcEEEEEECC
Q 012755 160 EHWVYLACIL-----MPWEAFDPLRQRWMRLPRMQCDECFTSADKESLAV-GTQLLVFGRE-------LSGFAIWMYSLI 226 (457)
Q Consensus 160 ~~~l~~~~~~-----~~~~~ydp~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~lyv~GG~-------~~~~~v~~yd~~ 226 (457)
..++|+.-.. +.+.++|..+.+- +..++.....+. .++. +..||+.-.. ..+..+.+||+.
T Consensus 12 ~~~v~V~d~~~~~~~~~v~ViD~~~~~v--~g~i~~G~~P~~----~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 12 ARRVYVLDPGHFAATTQVYTIDGEAGRV--LGMTDGGFLPNP----VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ 85 (352)
T ss_pred CCEEEEECCcccccCceEEEEECCCCEE--EEEEEccCCCce----eECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence 4556665332 6788889877543 232332222221 2333 5577876542 134679999999
Q ss_pred CCcEE-eCCCCCCCcc-------ceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEE
Q 012755 227 ANCWS-KCPQMNLPRC-------LFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWET 280 (457)
Q Consensus 227 t~~W~-~l~~lp~~r~-------~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~ 280 (457)
|.+=. +++..+.||. .+++..-|..+||.- ......+-+.|..+++-..
T Consensus 86 t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n-----~~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 86 THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQ-----FSPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEec-----CCCCCEEEEEECCCCcEEE
Confidence 98764 3443344442 222223355688762 1235789999999988644
No 145
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=79.82 E-value=71 Score=32.12 Aligned_cols=154 Identities=11% Similarity=0.029 Sum_probs=84.9
Q ss_pred EEEEEceecCC-cEEEEEECCCC-----cEEeCCCCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCc---
Q 012755 207 QLLVFGRELSG-FAIWMYSLIAN-----CWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGT--- 277 (457)
Q Consensus 207 ~lyv~GG~~~~-~~v~~yd~~t~-----~W~~l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--- 277 (457)
.|++.-....+ +.++..+.... .|+.+.+- ..-..+.+...++.+|+.-..+ .....+..++..+..
T Consensus 240 ~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~-~~~~~~~v~~~~~~~yi~Tn~~---a~~~~l~~~~l~~~~~~~ 315 (414)
T PF02897_consen 240 YLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPR-EDGVEYYVDHHGDRLYILTNDD---APNGRLVAVDLADPSPAE 315 (414)
T ss_dssp EEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEES-SSS-EEEEEEETTEEEEEE-TT----TT-EEEEEETTSTSGGG
T ss_pred EEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCC-CCceEEEEEccCCEEEEeeCCC---CCCcEEEEeccccccccc
Confidence 44444444444 78999999875 78777431 1222233445588999886633 234678888887765
Q ss_pred EE-ECCCCCCCCcceeEEEECCEEEEEeccCCCCCCCceEEEEECCCCceEEcC-CCCCCCCCCCCCCCCCCCCEEEEE-
Q 012755 278 WE-TLPDMNLPRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIE-NMYPSNVGTQSNPAMSSPPLVAVV- 354 (457)
Q Consensus 278 W~-~~~~~p~~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~-~~~~~~~~~~~~~~~r~~~~~~~~- 354 (457)
|. .+.+-.....-..+...++.|++..-.+ ....+.+||+. ..|.... +++. . + ++...
T Consensus 316 ~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~----~~~~l~v~~~~-~~~~~~~~~~p~-----------~-g-~v~~~~ 377 (414)
T PF02897_consen 316 WWTVLIPEDEDVSLEDVSLFKDYLVLSYREN----GSSRLRVYDLD-DGKESREIPLPE-----------A-G-SVSGVS 377 (414)
T ss_dssp EEEEEE--SSSEEEEEEEEETTEEEEEEEET----TEEEEEEEETT--TEEEEEEESSS-----------S-S-EEEEEE
T ss_pred ceeEEcCCCCceeEEEEEEECCEEEEEEEEC----CccEEEEEECC-CCcEEeeecCCc-----------c-e-EEeccC
Confidence 66 4443333233444556688888764322 35678899998 2333332 2222 1 1 11111
Q ss_pred ----CCEEEEE-ecC--CCeEEEEECCCCcEEEec
Q 012755 355 ----NNQLYSA-DQA--TNVVKKYNKTNNSWTVVK 382 (457)
Q Consensus 355 ----~g~ly~~-gg~--~~~v~~Yd~~~~~W~~v~ 382 (457)
.+.+++. .+. ...++.||+.+++-+.++
T Consensus 378 ~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 378 GDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp S-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred CCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 2344443 332 458999999999877654
No 146
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=79.25 E-value=64 Score=31.27 Aligned_cols=178 Identities=15% Similarity=0.062 Sum_probs=89.8
Q ss_pred cEEEEEECCCCcEEeCCCCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCc-EEECCC----CCCCCccee
Q 012755 218 FAIWMYSLIANCWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGT-WETLPD----MNLPRKLCS 292 (457)
Q Consensus 218 ~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~----~p~~r~~~~ 292 (457)
+.++.||+.+++=+..+. |.....-...-.++.|.+. ...+..+|++++. |+.+.. .+..|.+=.
T Consensus 47 ~~i~r~~~~~g~~~~~~~-p~~~~~~~~~d~~g~Lv~~---------~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~ 116 (307)
T COG3386 47 GRIHRLDPETGKKRVFPS-PGGFSSGALIDAGGRLIAC---------EHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDG 116 (307)
T ss_pred CeEEEecCCcCceEEEEC-CCCcccceeecCCCeEEEE---------ccccEEEeccCCceeEEeccccCCCCcCCCCce
Confidence 468888888665433321 2121211122224455544 1334555654433 355433 333455545
Q ss_pred EEEECCEEEEEecc-----CCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECC-EEEEEecCCC
Q 012755 293 GFFMDGKFYIIGGM-----SSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNN-QLYSADQATN 366 (457)
Q Consensus 293 ~~~~~g~iyv~GG~-----~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g-~ly~~gg~~~ 366 (457)
.+.-+|.+|+-.-. .........+++||| .+...++..-.. ...+..+..-++ .+|+.....+
T Consensus 117 ~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~----------~~~NGla~SpDg~tly~aDT~~~ 185 (307)
T COG3386 117 VVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDL----------TIPNGLAFSPDGKTLYVADTPAN 185 (307)
T ss_pred eEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcE----------EecCceEECCCCCEEEEEeCCCC
Confidence 55567888774222 111123457899999 455555533211 111222233355 7888887778
Q ss_pred eEEEEECCC--------CcEEEeccCCCccCCCCcceEEEEEeCCEEEEEcCcCCCCCceEEEEEeeCC
Q 012755 367 VVKKYNKTN--------NSWTVVKRLPVRANSFNGWGLAFKACGNSLLVIGGHRELQGEIIVLHSWDPT 427 (457)
Q Consensus 367 ~v~~Yd~~~--------~~W~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~~~~~~v~~y~~~ 427 (457)
.++.|+.+. +.+.....-+..+. | ..+.-+|.||+.....+ ..+.+|+|+
T Consensus 186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PD-----G-~~vDadG~lw~~a~~~g-----~~v~~~~pd 243 (307)
T COG3386 186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPD-----G-MAVDADGNLWVAAVWGG-----GRVVRFNPD 243 (307)
T ss_pred eEEEEecCcccCccCCcceEEEccCCCCCCC-----c-eEEeCCCCEEEecccCC-----ceEEEECCC
Confidence 999997763 12222222122221 1 23355888997554432 258889997
No 147
>PTZ00421 coronin; Provisional
Probab=79.18 E-value=85 Score=32.68 Aligned_cols=154 Identities=9% Similarity=0.037 Sum_probs=72.4
Q ss_pred CEEEEEceecCCcEEEEEECCCCcEEe-CCCCCCCccceeEE-eeCCEEEEEeeecCCCCccceEEEEeCCCCcE-EECC
Q 012755 206 TQLLVFGRELSGFAIWMYSLIANCWSK-CPQMNLPRCLFGSS-SLGEVAIVAGGTDKNGCILKSAELYNSELGTW-ETLP 282 (457)
Q Consensus 206 ~~lyv~GG~~~~~~v~~yd~~t~~W~~-l~~lp~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W-~~~~ 282 (457)
+.+++.|+.+ ..+.+||..+++-.. +..... .-.+++ ..++.+++.|+.+ ..+.+||+.+++- ..+.
T Consensus 138 ~~iLaSgs~D--gtVrIWDl~tg~~~~~l~~h~~--~V~sla~spdG~lLatgs~D------g~IrIwD~rsg~~v~tl~ 207 (493)
T PTZ00421 138 MNVLASAGAD--MVVNVWDVERGKAVEVIKCHSD--QITSLEWNLDGSLLCTTSKD------KKLNIIDPRDGTIVSSVE 207 (493)
T ss_pred CCEEEEEeCC--CEEEEEECCCCeEEEEEcCCCC--ceEEEEEECCCCEEEEecCC------CEEEEEECCCCcEEEEEe
Confidence 3566666543 468889988765322 211111 111222 2256677776643 4688899988752 1221
Q ss_pred CCCCCCcceeEEEECCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEE--CCEEEE
Q 012755 283 DMNLPRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVV--NNQLYS 360 (457)
Q Consensus 283 ~~p~~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~g~ly~ 360 (457)
.-...+........++..++..|.+.. ....+..||+.+..-. +..... ..........+ ++.+++
T Consensus 208 ~H~~~~~~~~~w~~~~~~ivt~G~s~s--~Dr~VklWDlr~~~~p-~~~~~~---------d~~~~~~~~~~d~d~~~L~ 275 (493)
T PTZ00421 208 AHASAKSQRCLWAKRKDLIITLGCSKS--QQRQIMLWDTRKMASP-YSTVDL---------DQSSALFIPFFDEDTNLLY 275 (493)
T ss_pred cCCCCcceEEEEcCCCCeEEEEecCCC--CCCeEEEEeCCCCCCc-eeEecc---------CCCCceEEEEEcCCCCEEE
Confidence 111111111111223334444443321 2356888998653311 100000 01111122222 455555
Q ss_pred Eec-CCCeEEEEECCCCcEEEe
Q 012755 361 ADQ-ATNVVKKYNKTNNSWTVV 381 (457)
Q Consensus 361 ~gg-~~~~v~~Yd~~~~~W~~v 381 (457)
++| ..+.|..||..+++....
T Consensus 276 lggkgDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 276 IGSKGEGNIRCFELMNERLTFC 297 (493)
T ss_pred EEEeCCCeEEEEEeeCCceEEE
Confidence 555 467899999988775443
No 148
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=78.84 E-value=68 Score=31.39 Aligned_cols=144 Identities=15% Similarity=0.225 Sum_probs=78.5
Q ss_pred CCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCcc--eeEEEECCEEEEEeccCCCCCCCceEEEEECCCC--
Q 012755 249 GEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKL--CSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETR-- 324 (457)
Q Consensus 249 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~--~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~-- 324 (457)
+..+.+-||-+ ...++++..++.|-- .++..... ......+|.+.+.|+.++ .+.+++..++
T Consensus 75 ~~~l~aTGGgD------D~AflW~~~~ge~~~--eltgHKDSVt~~~FshdgtlLATGdmsG------~v~v~~~stg~~ 140 (399)
T KOG0296|consen 75 NNNLVATGGGD------DLAFLWDISTGEFAG--ELTGHKDSVTCCSFSHDGTLLATGDMSG------KVLVFKVSTGGE 140 (399)
T ss_pred CCceEEecCCC------ceEEEEEccCCccee--EecCCCCceEEEEEccCceEEEecCCCc------cEEEEEcccCce
Confidence 56677777744 357788888888532 22222222 223355787777776543 4555655544
Q ss_pred ceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEECCCCcEEEeccCCCccCCCCcceEEEEEeCCE
Q 012755 325 TWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQATNVVKKYNKTNNSWTVVKRLPVRANSFNGWGLAFKACGNS 404 (457)
Q Consensus 325 ~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~~~~v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~g~ 404 (457)
+|.....+.. ..-...|- .+.++++|...+++|+|...++.=.+ -|+...... . ..-..-+|+
T Consensus 141 ~~~~~~e~~d--------ieWl~WHp----~a~illAG~~DGsvWmw~ip~~~~~k--v~~Gh~~~c-t--~G~f~pdGK 203 (399)
T KOG0296|consen 141 QWKLDQEVED--------IEWLKWHP----RAHILLAGSTDGSVWMWQIPSQALCK--VMSGHNSPC-T--CGEFIPDGK 203 (399)
T ss_pred EEEeecccCc--------eEEEEecc----cccEEEeecCCCcEEEEECCCcceee--EecCCCCCc-c--cccccCCCc
Confidence 5665433221 00011111 35778889888999999988863222 233222111 1 122233566
Q ss_pred EEEEcCcCCCCCceEEEEEeeCCCC
Q 012755 405 LLVIGGHRELQGEIIVLHSWDPTDG 429 (457)
Q Consensus 405 lyv~GG~~~~~~~~~~v~~y~~~~~ 429 (457)
-.+.|-.++ .+-+|+|.+.
T Consensus 204 r~~tgy~dg------ti~~Wn~ktg 222 (399)
T KOG0296|consen 204 RILTGYDDG------TIIVWNPKTG 222 (399)
T ss_pred eEEEEecCc------eEEEEecCCC
Confidence 666664442 5777888874
No 149
>PRK01742 tolB translocation protein TolB; Provisional
Probab=77.42 E-value=87 Score=31.81 Aligned_cols=139 Identities=9% Similarity=-0.021 Sum_probs=67.6
Q ss_pred ccEEEEeCCCCcEEeCCCCCCCccccCCCeeeEEeCCE-EEEEceecCCcEEEEEECCCCcEEeCCCCCCCccceeEEee
Q 012755 170 MPWEAFDPLRQRWMRLPRMQCDECFTSADKESLAVGTQ-LLVFGRELSGFAIWMYSLIANCWSKCPQMNLPRCLFGSSSL 248 (457)
Q Consensus 170 ~~~~~ydp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~-lyv~GG~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~ 248 (457)
..++.+|..+.+-..+...+... . ......++. |++........++|.+|..++..+++..-...-..... .-
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g~~--~---~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~w-Sp 301 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRGHN--G---APAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSW-SP 301 (429)
T ss_pred cEEEEEeCCCCceEEEecCCCcc--C---ceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEE-CC
Confidence 35777887766554444332211 0 112334554 44433233335689999988887776432211111111 22
Q ss_pred CC-EEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCcceeEEEECCE-EEEEeccCCCCCCCceEEEEECCCCce
Q 012755 249 GE-VAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFMDGK-FYIIGGMSSPTDPLTCGEEYNLETRTW 326 (457)
Q Consensus 249 ~~-~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~-iyv~GG~~~~~~~~~~~~~yd~~t~~W 326 (457)
++ +|++....++ ...++.+|..++.-+.+... . ......-+|+ |++.++ ..+..+|+.++.+
T Consensus 302 DG~~i~f~s~~~g----~~~I~~~~~~~~~~~~l~~~---~-~~~~~SpDG~~ia~~~~--------~~i~~~Dl~~g~~ 365 (429)
T PRK01742 302 DGQSILFTSDRSG----SPQVYRMSASGGGASLVGGR---G-YSAQISADGKTLVMING--------DNVVKQDLTSGST 365 (429)
T ss_pred CCCEEEEEECCCC----CceEEEEECCCCCeEEecCC---C-CCccCCCCCCEEEEEcC--------CCEEEEECCCCCe
Confidence 44 4554432222 24677777766543433211 1 1111222444 444332 2356689999988
Q ss_pred EEcC
Q 012755 327 KRIE 330 (457)
Q Consensus 327 ~~~~ 330 (457)
..+.
T Consensus 366 ~~lt 369 (429)
T PRK01742 366 EVLS 369 (429)
T ss_pred EEec
Confidence 7664
No 150
>PTZ00421 coronin; Provisional
Probab=77.37 E-value=96 Score=32.30 Aligned_cols=105 Identities=12% Similarity=0.018 Sum_probs=51.2
Q ss_pred CCEEEEEceecCCcEEEEEECCCCcEEe-----CCCCCC-CccceeEEee--CCEEEEEeeecCCCCccceEEEEeCCCC
Q 012755 205 GTQLLVFGRELSGFAIWMYSLIANCWSK-----CPQMNL-PRCLFGSSSL--GEVAIVAGGTDKNGCILKSAELYNSELG 276 (457)
Q Consensus 205 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~-----l~~lp~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 276 (457)
++.+++.|+.+ ..+.+||..++.... +..+.. ...-..++.. ++.+++.||.+ ..+.++|..++
T Consensus 87 d~~~LaSgS~D--gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D------gtVrIWDl~tg 158 (493)
T PTZ00421 87 DPQKLFTASED--GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD------MVVNVWDVERG 158 (493)
T ss_pred CCCEEEEEeCC--CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC------CEEEEEECCCC
Confidence 45566666553 357778876543211 111111 1111112221 23566666654 46788998876
Q ss_pred cEE-ECCCCCCCCcceeEE-EECCEEEEEeccCCCCCCCceEEEEECCCCc
Q 012755 277 TWE-TLPDMNLPRKLCSGF-FMDGKFYIIGGMSSPTDPLTCGEEYNLETRT 325 (457)
Q Consensus 277 ~W~-~~~~~p~~r~~~~~~-~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~ 325 (457)
+-. .+..... .-.+++ ..+|.+.+.|+.+ ..+.+||+.+++
T Consensus 159 ~~~~~l~~h~~--~V~sla~spdG~lLatgs~D------g~IrIwD~rsg~ 201 (493)
T PTZ00421 159 KAVEVIKCHSD--QITSLEWNLDGSLLCTTSKD------KKLNIIDPRDGT 201 (493)
T ss_pred eEEEEEcCCCC--ceEEEEEECCCCEEEEecCC------CEEEEEECCCCc
Confidence 532 1211111 111122 2367777776543 357889998765
No 151
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=77.21 E-value=70 Score=30.60 Aligned_cols=130 Identities=15% Similarity=0.143 Sum_probs=67.6
Q ss_pred EEEEEECCCCcEEeCCCCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCcceeEEEECC
Q 012755 219 AIWMYSLIANCWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFMDG 298 (457)
Q Consensus 219 ~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g 298 (457)
.+..||..++.-+. .+...-....++..+..=.+.||.+ ..+-.||..++.=..+..--.+-....-....|
T Consensus 36 slrlYdv~~~~l~~--~~~~~~plL~c~F~d~~~~~~G~~d------g~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~ 107 (323)
T KOG1036|consen 36 SLRLYDVPANSLKL--KFKHGAPLLDCAFADESTIVTGGLD------GQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVG 107 (323)
T ss_pred cEEEEeccchhhhh--heecCCceeeeeccCCceEEEeccC------ceEEEEEecCCcceeeccCCCceEEEEeeccCC
Confidence 46677776662211 1111112233455565556667765 357889999988776654333221111111133
Q ss_pred EEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEECCCC
Q 012755 299 KFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQATNVVKKYNKTNN 376 (457)
Q Consensus 299 ~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~~~~v~~Yd~~~~ 376 (457)
. .|.||++ ..+..+|+.+..= ....-. ... .-...+.|...++|.....+.+||..+.
T Consensus 108 ~-vIsgsWD------~~ik~wD~R~~~~--~~~~d~----------~kk-Vy~~~v~g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 108 C-VISGSWD------KTIKFWDPRNKVV--VGTFDQ----------GKK-VYCMDVSGNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred e-EEEcccC------ccEEEEecccccc--cccccc----------Cce-EEEEeccCCEEEEeecCceEEEEEcccc
Confidence 3 3455543 4567788876110 000000 111 1223446667778878889999998765
No 152
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=76.99 E-value=87 Score=31.60 Aligned_cols=217 Identities=12% Similarity=0.031 Sum_probs=99.3
Q ss_pred cEEEEEecCccEEEEeCCCCcEEeCCCCCCCccccCCCeeeEEe-CCEEEEEceecCCcEEEEEECCCCcEEeCCCCC--
Q 012755 161 HWVYLACILMPWEAFDPLRQRWMRLPRMQCDECFTSADKESLAV-GTQLLVFGRELSGFAIWMYSLIANCWSKCPQMN-- 237 (457)
Q Consensus 161 ~~l~~~~~~~~~~~ydp~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~v~~yd~~t~~W~~l~~lp-- 237 (457)
...++++....+..=+-.-++|..++..+....... ...+. ++.+++.|.. ..+++-+-.-.+|+.+...+
T Consensus 147 ~~g~~vG~~G~il~T~DgG~tW~~~~~~~~~p~~~~---~i~~~~~~~~~ivg~~---G~v~~S~D~G~tW~~~~~~t~~ 220 (398)
T PLN00033 147 KEGWIIGKPAILLHTSDGGETWERIPLSPKLPGEPV---LIKATGPKSAEMVTDE---GAIYVTSNAGRNWKAAVEETVS 220 (398)
T ss_pred CEEEEEcCceEEEEEcCCCCCceECccccCCCCCce---EEEEECCCceEEEecc---ceEEEECCCCCCceEccccccc
Confidence 345555543333333334568988764322111111 12334 3456666632 23666555667898862111
Q ss_pred --CCc--------------cceeEEe-eCCEEEEEeeecCCCCccceEEE-EeCCCCcEEECCCCCCCCcceeEEEECCE
Q 012755 238 --LPR--------------CLFGSSS-LGEVAIVAGGTDKNGCILKSAEL-YNSELGTWETLPDMNLPRKLCSGFFMDGK 299 (457)
Q Consensus 238 --~~r--------------~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~-yd~~t~~W~~~~~~p~~r~~~~~~~~~g~ 299 (457)
..+ ..+++.. -++.++++|-. ..+++ .|.-...|+.+......+........++.
T Consensus 221 ~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~-------G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~ 293 (398)
T PLN00033 221 ATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSR-------GNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGG 293 (398)
T ss_pred ccccccccccccccceeccceeeEEEcCCCCEEEEECC-------ccEEEecCCCCcceEEecCCCccceeeeeEcCCCC
Confidence 111 0111111 13344444321 12222 23333348888544433322223345788
Q ss_pred EEEEeccCCCCCCCceEEEEECCCC-----ceEEcCCCCCCCCCCCCCCCCCCCCEEEEE-CCEEEEEecCCCeEEEEEC
Q 012755 300 FYIIGGMSSPTDPLTCGEEYNLETR-----TWKRIENMYPSNVGTQSNPAMSSPPLVAVV-NNQLYSADQATNVVKKYNK 373 (457)
Q Consensus 300 iyv~GG~~~~~~~~~~~~~yd~~t~-----~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~g~ly~~gg~~~~v~~Yd~ 373 (457)
++++|... .+..-+.... .|+++..... ......+... ++.++++|. .+.+..-..
T Consensus 294 l~l~g~~G-------~l~~S~d~G~~~~~~~f~~~~~~~~----------~~~l~~v~~~~d~~~~a~G~-~G~v~~s~D 355 (398)
T PLN00033 294 LWLLTRGG-------GLYVSKGTGLTEEDFDFEEADIKSR----------GFGILDVGYRSKKEAWAAGG-SGILLRSTD 355 (398)
T ss_pred EEEEeCCc-------eEEEecCCCCcccccceeecccCCC----------CcceEEEEEcCCCcEEEEEC-CCcEEEeCC
Confidence 88876321 1222222223 4454432211 1111223233 668888874 456777777
Q ss_pred CCCcEEEeccCCCccCCCCcceEEEEEeCCEEEEEcCc
Q 012755 374 TNNSWTVVKRLPVRANSFNGWGLAFKACGNSLLVIGGH 411 (457)
Q Consensus 374 ~~~~W~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~ 411 (457)
..++|+.+.....-... .+ .....-+++.|++|-.
T Consensus 356 ~G~tW~~~~~~~~~~~~--ly-~v~f~~~~~g~~~G~~ 390 (398)
T PLN00033 356 GGKSWKRDKGADNIAAN--LY-SVKFFDDKKGFVLGND 390 (398)
T ss_pred CCcceeEccccCCCCcc--ee-EEEEcCCCceEEEeCC
Confidence 78899997632211110 11 1122345889998843
No 153
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=76.16 E-value=67 Score=29.85 Aligned_cols=160 Identities=22% Similarity=0.256 Sum_probs=87.9
Q ss_pred eEEEEeCCCCcEEECCCCCCCCcceeEEEECCEEEEEeccCCCCCCCceEEEEEC----CCCceEEcCCCCCCCCCCCCC
Q 012755 267 SAELYNSELGTWETLPDMNLPRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNL----ETRTWKRIENMYPSNVGTQSN 342 (457)
Q Consensus 267 ~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~----~t~~W~~~~~~~~~~~~~~~~ 342 (457)
.+.......+.|.+=|-.+ ++++|++.+.. ...+..|.. ..+.|.+.-.+|.
T Consensus 11 ~~~~~~~~~GsWmrDpl~~-----------~~r~~~~~~~~-----~~~l~E~~~~~~~~~~~~~~~~~lp~-------- 66 (249)
T KOG3545|consen 11 TVKTAGPRFGAWMRDPLPA-----------DDRIYVMNYFD-----GLMLTEYTNLEDFKRGRKAEKYRLPY-------- 66 (249)
T ss_pred EEEeeccccceeecCCCcc-----------cCceEEecccc-----CceEEEeccHHHhhccCcceEEeCCC--------
Confidence 4445566667886543211 67788884432 233444544 3344555545544
Q ss_pred CCCCCCCEEEEECCEEEEEecCCCeEEEEECCCC---cEEEeccCCCccCCCCcce----EEEEEeCCEEEEEcCcCCCC
Q 012755 343 PAMSSPPLVAVVNNQLYSADQATNVVKKYNKTNN---SWTVVKRLPVRANSFNGWG----LAFKACGNSLLVIGGHRELQ 415 (457)
Q Consensus 343 ~~~r~~~~~~~~~g~ly~~gg~~~~v~~Yd~~~~---~W~~v~~~p~~~~~~~~~~----~~~~~~~g~lyv~GG~~~~~ 415 (457)
...+-+-++.+|.+|.-......+.+||.++. .|+.++.+.....++..++ .-+++...-|+++=-..+..
T Consensus 67 --~~~gTg~VVynGs~yynk~~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~ 144 (249)
T KOG3545|consen 67 --SWDGTGHVVYNGSLYYNKAGTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENA 144 (249)
T ss_pred --CccccceEEEcceEEeeccCCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccC
Confidence 45566778999999999888889999999984 5777765543333222222 12334444566654433333
Q ss_pred CceEEEEEeeCCCCCCCCCCeeEeccccccCceEEeeee
Q 012755 416 GEIIVLHSWDPTDGNSGEAQWNELAVRERAGAFVYNCAV 454 (457)
Q Consensus 416 ~~~~~v~~y~~~~~~w~~~~W~~l~~~~~~~~~~~~~~~ 454 (457)
+. ..+-..||.+=. -..+|..-=+++.++..+.-|.+
T Consensus 145 g~-iv~skLdp~tl~-~e~tW~T~~~k~~~~~aF~iCGv 181 (249)
T KOG3545|consen 145 GT-IVLSKLDPETLE-VERTWNTTLPKRSAGNAFMICGV 181 (249)
T ss_pred Cc-EEeeccCHHHhh-eeeeeccccCCCCcCceEEEeee
Confidence 32 344566774300 11278544344445555555544
No 154
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=76.04 E-value=66 Score=29.72 Aligned_cols=136 Identities=10% Similarity=0.099 Sum_probs=78.2
Q ss_pred cEEEEEECCCCcEEeCCCCCCCcc-ceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCcceeEEEE
Q 012755 218 FAIWMYSLIANCWSKCPQMNLPRC-LFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFM 296 (457)
Q Consensus 218 ~~v~~yd~~t~~W~~l~~lp~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 296 (457)
..+-.+||..+.--+.-.- ..+. .-+..+.++.-+..||-+ ..+.++|..|++=-+- ....-...-++.+
T Consensus 39 rtvrLWNp~rg~liktYsg-hG~EVlD~~~s~Dnskf~s~GgD------k~v~vwDV~TGkv~Rr--~rgH~aqVNtV~f 109 (307)
T KOG0316|consen 39 RTVRLWNPLRGALIKTYSG-HGHEVLDAALSSDNSKFASCGGD------KAVQVWDVNTGKVDRR--FRGHLAQVNTVRF 109 (307)
T ss_pred ceEEeecccccceeeeecC-CCceeeeccccccccccccCCCC------ceEEEEEcccCeeeee--cccccceeeEEEe
Confidence 3567778877654332110 1111 111223344444555422 5688899988863211 0000011122333
Q ss_pred CC--EEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEECC
Q 012755 297 DG--KFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQATNVVKKYNKT 374 (457)
Q Consensus 297 ~g--~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~~~~v~~Yd~~ 374 (457)
|. .+.+.|+. -..+.+||-..+..+.+..+-. .+-+...+.+.++..+.|..-+.+..||..
T Consensus 110 NeesSVv~Sgsf------D~s~r~wDCRS~s~ePiQilde----------a~D~V~Si~v~~heIvaGS~DGtvRtydiR 173 (307)
T KOG0316|consen 110 NEESSVVASGSF------DSSVRLWDCRSRSFEPIQILDE----------AKDGVSSIDVAEHEIVAGSVDGTVRTYDIR 173 (307)
T ss_pred cCcceEEEeccc------cceeEEEEcccCCCCccchhhh----------hcCceeEEEecccEEEeeccCCcEEEEEee
Confidence 33 34444443 3467889998888887776655 566667778888888888888899999997
Q ss_pred CCcE
Q 012755 375 NNSW 378 (457)
Q Consensus 375 ~~~W 378 (457)
.++-
T Consensus 174 ~G~l 177 (307)
T KOG0316|consen 174 KGTL 177 (307)
T ss_pred ccee
Confidence 7653
No 155
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=74.30 E-value=19 Score=37.27 Aligned_cols=105 Identities=13% Similarity=0.036 Sum_probs=60.8
Q ss_pred ccEEEEEecCccEEEEeCCCCcEEeCCCCCCCccccCCCeeeEEe--CCEEEEEceecCCcEEEEEECCCCcEEe-----
Q 012755 160 EHWVYLACILMPWEAFDPLRQRWMRLPRMQCDECFTSADKESLAV--GTQLLVFGRELSGFAIWMYSLIANCWSK----- 232 (457)
Q Consensus 160 ~~~l~~~~~~~~~~~ydp~~~~W~~l~~~p~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~v~~yd~~t~~W~~----- 232 (457)
.--||+.+...+++.+|...++|-.--....+. -.++.+ -..|+.+|+.. ..|..+||.+++--.
T Consensus 145 scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~------lN~v~in~~hgLla~Gt~~--g~VEfwDpR~ksrv~~l~~~ 216 (703)
T KOG2321|consen 145 SCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGE------LNVVSINEEHGLLACGTED--GVVEFWDPRDKSRVGTLDAA 216 (703)
T ss_pred CccEEEeecCcceEEEEcccccccccccccccc------ceeeeecCccceEEecccC--ceEEEecchhhhhheeeecc
Confidence 345788787899999999999984322121111 112333 34677777654 368889998775321
Q ss_pred --CCCCCCCccceeEE--ee-CCEEEEEeeecCCCCccceEEEEeCCCCc
Q 012755 233 --CPQMNLPRCLFGSS--SL-GEVAIVAGGTDKNGCILKSAELYNSELGT 277 (457)
Q Consensus 233 --l~~lp~~r~~~~~~--~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~ 277 (457)
++..|..-...+++ .+ ++-|-+.-|. ....+++||+.+.+
T Consensus 217 ~~v~s~pg~~~~~svTal~F~d~gL~~aVGt-----s~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 217 SSVNSHPGGDAAPSVTALKFRDDGLHVAVGT-----STGSVLIYDLRASK 261 (703)
T ss_pred cccCCCccccccCcceEEEecCCceeEEeec-----cCCcEEEEEcccCC
Confidence 22233222222222 23 4456665553 34579999998766
No 156
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=74.17 E-value=75 Score=29.52 Aligned_cols=199 Identities=14% Similarity=0.128 Sum_probs=108.1
Q ss_pred cEEEEeCCCCcEEeCCCCCCCccccCCCeeeEEeCCEEEEEceecCCcEEEEEECC----CCcEEeCCCCCCCccceeEE
Q 012755 171 PWEAFDPLRQRWMRLPRMQCDECFTSADKESLAVGTQLLVFGRELSGFAIWMYSLI----ANCWSKCPQMNLPRCLFGSS 246 (457)
Q Consensus 171 ~~~~ydp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~----t~~W~~l~~lp~~r~~~~~~ 246 (457)
......+....|.+=| +|. ++++|++ .......+..|... ...|.+.-.+|.+-.+.+.+
T Consensus 11 ~~~~~~~~~GsWmrDp-l~~--------------~~r~~~~-~~~~~~~l~E~~~~~~~~~~~~~~~~~lp~~~~gTg~V 74 (249)
T KOG3545|consen 11 TVKTAGPRFGAWMRDP-LPA--------------DDRIYVM-NYFDGLMLTEYTNLEDFKRGRKAEKYRLPYSWDGTGHV 74 (249)
T ss_pred EEEeeccccceeecCC-Ccc--------------cCceEEe-ccccCceEEEeccHHHhhccCcceEEeCCCCccccceE
Confidence 3344555567786543 221 4566666 33334456666553 33455555567777778888
Q ss_pred eeCCEEEEEeeecCCCCccceEEEEeCCCCc---EEECCCCCCC---------CcceeEEEECCEEEEEeccCCCCCCCc
Q 012755 247 SLGEVAIVAGGTDKNGCILKSAELYNSELGT---WETLPDMNLP---------RKLCSGFFMDGKFYIIGGMSSPTDPLT 314 (457)
Q Consensus 247 ~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~---W~~~~~~p~~---------r~~~~~~~~~g~iyv~GG~~~~~~~~~ 314 (457)
+++|.+|.-.+ ....+..||.++.. |..+|.+... ......++-..-++++--..+.. -..
T Consensus 75 VynGs~yynk~------~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~-g~i 147 (249)
T KOG3545|consen 75 VYNGSLYYNKA------GTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENA-GTI 147 (249)
T ss_pred EEcceEEeecc------CCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccC-CcE
Confidence 89998887653 24678889998843 7777654221 11223445455566663222211 112
Q ss_pred eEEEEECCC----CceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecC---CCeE-EEEECCCCcEEEeccCCC
Q 012755 315 CGEEYNLET----RTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQA---TNVV-KKYNKTNNSWTVVKRLPV 386 (457)
Q Consensus 315 ~~~~yd~~t----~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~---~~~v-~~Yd~~~~~W~~v~~~p~ 386 (457)
.+...|+.+ .+|..--+ .+....+..+.|.||++... ...| +.||..+++=+.+ .+|-
T Consensus 148 v~skLdp~tl~~e~tW~T~~~-------------k~~~~~aF~iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~-~ipf 213 (249)
T KOG3545|consen 148 VLSKLDPETLEVERTWNTTLP-------------KRSAGNAFMICGVLYVVHSYNCTHTQISYAYDTTTGTQERI-DLPF 213 (249)
T ss_pred EeeccCHHHhheeeeeccccC-------------CCCcCceEEEeeeeEEEeccccCCceEEEEEEcCCCceecc-cccc
Confidence 235667643 45632211 33344566788999999753 1223 6899988776443 3443
Q ss_pred ccCCCCcceEEEE---EeCCEEEEEc
Q 012755 387 RANSFNGWGLAFK---ACGNSLLVIG 409 (457)
Q Consensus 387 ~~~~~~~~~~~~~---~~~g~lyv~G 409 (457)
..... .++.. ..+.+||+.-
T Consensus 214 ~N~y~---~~~~idYNP~D~~LY~wd 236 (249)
T KOG3545|consen 214 PNPYS---YATMIDYNPRDRRLYAWD 236 (249)
T ss_pred cchhh---hhhccCCCcccceeeEec
Confidence 33211 12222 3356788853
No 157
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=74.12 E-value=57 Score=28.11 Aligned_cols=83 Identities=13% Similarity=0.146 Sum_probs=48.8
Q ss_pred EEECCEEEEEeccCCCCCCCceEEEEECCCCce-EEcCCCCCCCCCCCCCCCCCCCCEE-EEECCEEEEEec--C--CCe
Q 012755 294 FFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTW-KRIENMYPSNVGTQSNPAMSSPPLV-AVVNNQLYSADQ--A--TNV 367 (457)
Q Consensus 294 ~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W-~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~g~ly~~gg--~--~~~ 367 (457)
+.++|.+|.++....... ...+..||..+.+. ..++ +|.. .........+ ++.++.|.++.. . .-+
T Consensus 2 V~vnG~~hW~~~~~~~~~-~~~IlsFDl~~E~F~~~~~-lP~~------~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~ 73 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDE-KDFILSFDLSTEKFGRSLP-LPFC------NDDDDDSVSLSVVRGDCLCVLYQCDETSKIE 73 (164)
T ss_pred EEECCEEEeeEEecCCCC-ceEEEEEeccccccCCEEC-CCCc------cCccCCEEEEEEecCCEEEEEEeccCCccEE
Confidence 578999999876544321 22689999999999 5543 3330 0001122233 333778887742 1 236
Q ss_pred EEEEE---CCCCcEEEeccC
Q 012755 368 VKKYN---KTNNSWTVVKRL 384 (457)
Q Consensus 368 v~~Yd---~~~~~W~~v~~~ 384 (457)
||+-+ ....+|+++-..
T Consensus 74 IWvm~~~~~~~~SWtK~~~i 93 (164)
T PF07734_consen 74 IWVMKKYGYGKESWTKLFTI 93 (164)
T ss_pred EEEEeeeccCcceEEEEEEE
Confidence 66655 236799987543
No 158
>PRK10115 protease 2; Provisional
Probab=73.45 E-value=1.4e+02 Score=32.46 Aligned_cols=149 Identities=9% Similarity=-0.076 Sum_probs=79.5
Q ss_pred cCCcEEEEEEC--CCCcEEeCCCCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCC-CCcEEECCCCCCCCcce
Q 012755 215 LSGFAIWMYSL--IANCWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSE-LGTWETLPDMNLPRKLC 291 (457)
Q Consensus 215 ~~~~~v~~yd~--~t~~W~~l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~-t~~W~~~~~~p~~r~~~ 291 (457)
..++.++.|+. .+..|..+-+.+.. ..+.....++.+|+.--.+. ....+...+.. ++.|+.+-+......--
T Consensus 244 ~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ly~~tn~~~---~~~~l~~~~~~~~~~~~~l~~~~~~~~i~ 319 (686)
T PRK10115 244 ATTSEVLLLDAELADAEPFVFLPRRKD-HEYSLDHYQHRFYLRSNRHG---KNFGLYRTRVRDEQQWEELIPPRENIMLE 319 (686)
T ss_pred CccccEEEEECcCCCCCceEEEECCCC-CEEEEEeCCCEEEEEEcCCC---CCceEEEecCCCcccCeEEECCCCCCEEE
Confidence 34456787773 23444332222222 22233345678888754322 23456666776 57898875443333333
Q ss_pred eEEEECCEEEEEeccCCCCCCCceEEEEECCCCceEEcC-CCCCCCCCCCCCCCCCCCCEEEE----E-CCEEEEEe-c-
Q 012755 292 SGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIE-NMYPSNVGTQSNPAMSSPPLVAV----V-NNQLYSAD-Q- 363 (457)
Q Consensus 292 ~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~-~~~~~~~~~~~~~~~r~~~~~~~----~-~g~ly~~g-g- 363 (457)
.....++.+++..-.. ....++++|..++....+. ..+. .. .... . ++.+++.- +
T Consensus 320 ~~~~~~~~l~~~~~~~----g~~~l~~~~~~~~~~~~l~~~~~~------------~~-~~~~~~~~~~~~~~~~~~ss~ 382 (686)
T PRK10115 320 GFTLFTDWLVVEERQR----GLTSLRQINRKTREVIGIAFDDPA------------YV-TWIAYNPEPETSRLRYGYSSM 382 (686)
T ss_pred EEEEECCEEEEEEEeC----CEEEEEEEcCCCCceEEecCCCCc------------eE-eeecccCCCCCceEEEEEecC
Confidence 4445577777764322 2345778887666655554 2111 11 1111 1 23444432 2
Q ss_pred -CCCeEEEEECCCCcEEEeccC
Q 012755 364 -ATNVVKKYNKTNNSWTVVKRL 384 (457)
Q Consensus 364 -~~~~v~~Yd~~~~~W~~v~~~ 384 (457)
....++.||+.+++|+.+...
T Consensus 383 ~~P~~~y~~d~~~~~~~~l~~~ 404 (686)
T PRK10115 383 TTPDTLFELDMDTGERRVLKQT 404 (686)
T ss_pred CCCCEEEEEECCCCcEEEEEec
Confidence 356899999999999887643
No 159
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=71.96 E-value=1.1e+02 Score=30.55 Aligned_cols=189 Identities=14% Similarity=0.155 Sum_probs=92.8
Q ss_pred EEEEEECCCCcEEeCCCCCCCccceeEE-eeCCEEEEEeeecCCCCccceEEEEeCCC---CcEEECCCCCCCCcceeEE
Q 012755 219 AIWMYSLIANCWSKCPQMNLPRCLFGSS-SLGEVAIVAGGTDKNGCILKSAELYNSEL---GTWETLPDMNLPRKLCSGF 294 (457)
Q Consensus 219 ~v~~yd~~t~~W~~l~~lp~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~v~~yd~~t---~~W~~~~~~p~~r~~~~~~ 294 (457)
.++.+|..|+.-...-+-..+-+..+++ .-++.=+|.|+.+ ..+...|... +.|+-+.. ++-.--+.
T Consensus 292 ~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d------r~i~~wdlDgn~~~~W~gvr~---~~v~dlai 362 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPD------RTIIMWDLDGNILGNWEGVRD---PKVHDLAI 362 (519)
T ss_pred heeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCC------CcEEEecCCcchhhccccccc---ceeEEEEE
Confidence 4677787777654432211222222222 2266667877744 3445555544 35876543 33333344
Q ss_pred EECCE-EEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEE-EEECCEEEEEecCCCeEEEEE
Q 012755 295 FMDGK-FYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLV-AVVNNQLYSADQATNVVKKYN 372 (457)
Q Consensus 295 ~~~g~-iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~g~ly~~gg~~~~v~~Yd 372 (457)
..+|+ ++.++ .-..+..|+.++..=..+-... ....+. ..-++++.++.-....+..+|
T Consensus 363 t~Dgk~vl~v~-------~d~~i~l~~~e~~~dr~lise~------------~~its~~iS~d~k~~LvnL~~qei~LWD 423 (519)
T KOG0293|consen 363 TYDGKYVLLVT-------VDKKIRLYNREARVDRGLISEE------------QPITSFSISKDGKLALVNLQDQEIHLWD 423 (519)
T ss_pred cCCCcEEEEEe-------cccceeeechhhhhhhcccccc------------CceeEEEEcCCCcEEEEEcccCeeEEee
Confidence 55665 55543 1234556776665433221110 111112 234788888887888999999
Q ss_pred CCCCcEEEeccCCCccCCCCcceEEEEEeCCEEEEEcCcCCCCCceEEEEEeeCCCCCCCCCCeeEeccccccCceEE
Q 012755 373 KTNNSWTVVKRLPVRANSFNGWGLAFKACGNSLLVIGGHRELQGEIIVLHSWDPTDGNSGEAQWNELAVRERAGAFVY 450 (457)
Q Consensus 373 ~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~~~~~~v~~y~~~~~~w~~~~W~~l~~~~~~~~~~~ 450 (457)
.+ +|+.+..--.....+ ..--.+....+.=+|..|... ..+|+|+-.++ ..|++-+.+...+.
T Consensus 424 l~--e~~lv~kY~Ghkq~~-fiIrSCFgg~~~~fiaSGSED-----~kvyIWhr~sg-------kll~~LsGHs~~vN 486 (519)
T KOG0293|consen 424 LE--ENKLVRKYFGHKQGH-FIIRSCFGGGNDKFIASGSED-----SKVYIWHRISG-------KLLAVLSGHSKTVN 486 (519)
T ss_pred cc--hhhHHHHhhcccccc-eEEEeccCCCCcceEEecCCC-----ceEEEEEccCC-------ceeEeecCCcceee
Confidence 98 576664322222111 000001111222333333332 26999998885 35555554554443
No 160
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=71.18 E-value=67 Score=27.66 Aligned_cols=85 Identities=6% Similarity=-0.053 Sum_probs=48.5
Q ss_pred EeeCCEEEEEeeecCCCCccceEEEEeCCCCcE-EECCCCCCCC---cceeEEEE-CCEEEEEeccCCCCCCCceEEEE-
Q 012755 246 SSLGEVAIVAGGTDKNGCILKSAELYNSELGTW-ETLPDMNLPR---KLCSGFFM-DGKFYIIGGMSSPTDPLTCGEEY- 319 (457)
Q Consensus 246 ~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~~p~~r---~~~~~~~~-~g~iyv~GG~~~~~~~~~~~~~y- 319 (457)
+.++|.+|-++....... ...+..||..+.+. +.++.++... ......++ ++++.++--.... ..-.+|+-
T Consensus 2 V~vnG~~hW~~~~~~~~~-~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~--~~~~IWvm~ 78 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDE-KDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDET--SKIEIWVMK 78 (164)
T ss_pred EEECCEEEeeEEecCCCC-ceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCC--ccEEEEEEe
Confidence 467888998877654321 12689999999999 5554332222 12333233 7788877432111 12344443
Q ss_pred --ECCCCceEEcCCCC
Q 012755 320 --NLETRTWKRIENMY 333 (457)
Q Consensus 320 --d~~t~~W~~~~~~~ 333 (457)
+.....|+++-.+.
T Consensus 79 ~~~~~~~SWtK~~~i~ 94 (164)
T PF07734_consen 79 KYGYGKESWTKLFTID 94 (164)
T ss_pred eeccCcceEEEEEEEe
Confidence 33477899875443
No 161
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=68.71 E-value=1.4e+02 Score=30.18 Aligned_cols=121 Identities=8% Similarity=0.082 Sum_probs=67.0
Q ss_pred eEEee-CCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCcceeEEEE-CCEEEEEeccCCCCCCCceEEEEEC
Q 012755 244 GSSSL-GEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFM-DGKFYIIGGMSSPTDPLTCGEEYNL 321 (457)
Q Consensus 244 ~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~g~iyv~GG~~~~~~~~~~~~~yd~ 321 (457)
++++. +|.|+..|-. ...+-+||.+.+. .+...|..-........ ++--|++-+.+ ..++..||+
T Consensus 352 s~~fHpDgLifgtgt~------d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~ad-----d~~V~lwDL 418 (506)
T KOG0289|consen 352 SAAFHPDGLIFGTGTP------DGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAAD-----DGSVKLWDL 418 (506)
T ss_pred EeeEcCCceEEeccCC------CceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEec-----CCeEEEEEe
Confidence 33343 5666655432 3567889998887 55555553322223322 33344443322 234888998
Q ss_pred CCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEE--CCEEEEEecCCCeEEEEECCCCcEEEeccCCCcc
Q 012755 322 ETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVV--NNQLYSADQATNVVKKYNKTNNSWTVVKRLPVRA 388 (457)
Q Consensus 322 ~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~g~ly~~gg~~~~v~~Yd~~~~~W~~v~~~p~~~ 388 (457)
...+ .+...+. + .........+ -|...+++|..-.|+.|+..+..|+++..++...
T Consensus 419 RKl~--n~kt~~l--------~-~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~s 476 (506)
T KOG0289|consen 419 RKLK--NFKTIQL--------D-EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHS 476 (506)
T ss_pred hhhc--ccceeec--------c-ccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcc
Confidence 7755 2222222 0 1112222333 3566667777777888899999999998776443
No 162
>PRK10115 protease 2; Provisional
Probab=68.13 E-value=1.9e+02 Score=31.60 Aligned_cols=193 Identities=8% Similarity=0.014 Sum_probs=93.8
Q ss_pred cEEEEEECCCCcEE--eCCCCCCCccceeEEee-CCEEEEEeeecCCCCccceEEEEeC--CCCcEEECCCCCCCCccee
Q 012755 218 FAIWMYSLIANCWS--KCPQMNLPRCLFGSSSL-GEVAIVAGGTDKNGCILKSAELYNS--ELGTWETLPDMNLPRKLCS 292 (457)
Q Consensus 218 ~~v~~yd~~t~~W~--~l~~lp~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~--~t~~W~~~~~~p~~r~~~~ 292 (457)
.+++.++..|+.-. .+-.-+........... +++..++...... .+.++.|+. .+..|..+-+.+.. ....
T Consensus 199 ~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~ 274 (686)
T PRK10115 199 YQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASAT---TSEVLLLDAELADAEPFVFLPRRKD-HEYS 274 (686)
T ss_pred CEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCc---cccEEEEECcCCCCCceEEEECCCC-CEEE
Confidence 68999998887321 12110111112222222 4443344443322 356777773 34444333222221 1123
Q ss_pred EEEECCEEEEEeccCCCCCCCceEEEEECC-CCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEec--CCCeEE
Q 012755 293 GFFMDGKFYIIGGMSSPTDPLTCGEEYNLE-TRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQ--ATNVVK 369 (457)
Q Consensus 293 ~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~-t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg--~~~~v~ 369 (457)
....++.+|+.--.+. ....+...+.. ++.|+.+-+... ...--.+...++.|++... ....++
T Consensus 275 ~~~~~~~ly~~tn~~~---~~~~l~~~~~~~~~~~~~l~~~~~----------~~~i~~~~~~~~~l~~~~~~~g~~~l~ 341 (686)
T PRK10115 275 LDHYQHRFYLRSNRHG---KNFGLYRTRVRDEQQWEELIPPRE----------NIMLEGFTLFTDWLVVEERQRGLTSLR 341 (686)
T ss_pred EEeCCCEEEEEEcCCC---CCceEEEecCCCcccCeEEECCCC----------CCEEEEEEEECCEEEEEEEeCCEEEEE
Confidence 3345688998753321 23346667776 578988765422 1222234455777777643 344678
Q ss_pred EEECCCCcEEEec-cCCCccCCCCcceEEEE-Ee-CCEEEE-EcCcCCCCCceEEEEEeeCCCCCCCCCCeeEecc
Q 012755 370 KYNKTNNSWTVVK-RLPVRANSFNGWGLAFK-AC-GNSLLV-IGGHRELQGEIIVLHSWDPTDGNSGEAQWNELAV 441 (457)
Q Consensus 370 ~Yd~~~~~W~~v~-~~p~~~~~~~~~~~~~~-~~-~g~lyv-~GG~~~~~~~~~~v~~y~~~~~~w~~~~W~~l~~ 441 (457)
.+|..++....+. ..|.... ..... .. ++.+++ +.+...+ ..++.||+.++ +|+.+..
T Consensus 342 ~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~ss~~~P----~~~y~~d~~~~-----~~~~l~~ 403 (686)
T PRK10115 342 QINRKTREVIGIAFDDPAYVT-----WIAYNPEPETSRLRYGYSSMTTP----DTLFELDMDTG-----ERRVLKQ 403 (686)
T ss_pred EEcCCCCceEEecCCCCceEe-----eecccCCCCCceEEEEEecCCCC----CEEEEEECCCC-----cEEEEEe
Confidence 8887666655543 1111100 00010 01 234433 3333322 47899999875 5776654
No 163
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=68.10 E-value=1.5e+02 Score=30.45 Aligned_cols=188 Identities=13% Similarity=0.139 Sum_probs=93.9
Q ss_pred EeCCEEEEEceecCCcEEEEEECCCC-c-EEeCCCCCCCccceeEEee-CCEEEEEeeecCCCCccceEEEEeCCCCcEE
Q 012755 203 AVGTQLLVFGRELSGFAIWMYSLIAN-C-WSKCPQMNLPRCLFGSSSL-GEVAIVAGGTDKNGCILKSAELYNSELGTWE 279 (457)
Q Consensus 203 ~~~~~lyv~GG~~~~~~v~~yd~~t~-~-W~~l~~lp~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~ 279 (457)
..++...+-|.. ...+.+||...+ . -+.+...+... ++++.. .+.+++.|+.+ ..+.++|.++++-.
T Consensus 212 s~d~~~l~s~s~--D~tiriwd~~~~~~~~~~l~gH~~~v--~~~~f~p~g~~i~Sgs~D------~tvriWd~~~~~~~ 281 (456)
T KOG0266|consen 212 SPDGSYLLSGSD--DKTLRIWDLKDDGRNLKTLKGHSTYV--TSVAFSPDGNLLVSGSDD------GTVRIWDVRTGECV 281 (456)
T ss_pred CCCCcEEEEecC--CceEEEeeccCCCeEEEEecCCCCce--EEEEecCCCCEEEEecCC------CcEEEEeccCCeEE
Confidence 345554444433 346888888433 2 23344433333 333332 44788888765 46888898886544
Q ss_pred ECCCCCCCCcceeEEEECCEEEEEeccCCCCCCCceEEEEECCCCceE---EcCCCCCCCCCCCCCCCCCCCCEEEEE--
Q 012755 280 TLPDMNLPRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWK---RIENMYPSNVGTQSNPAMSSPPLVAVV-- 354 (457)
Q Consensus 280 ~~~~~p~~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~---~~~~~~~~~~~~~~~~~~r~~~~~~~~-- 354 (457)
..-..-..........-++.+++.+.+ ...+.+||+.++.-. .+..... .. ....+..
T Consensus 282 ~~l~~hs~~is~~~f~~d~~~l~s~s~------d~~i~vwd~~~~~~~~~~~~~~~~~----------~~-~~~~~~fsp 344 (456)
T KOG0266|consen 282 RKLKGHSDGISGLAFSPDGNLLVSASY------DGTIRVWDLETGSKLCLKLLSGAEN----------SA-PVTSVQFSP 344 (456)
T ss_pred EeeeccCCceEEEEECCCCCEEEEcCC------CccEEEEECCCCceeeeecccCCCC----------CC-ceeEEEECC
Confidence 331111111111122236667666543 345788999887743 2222111 11 1222222
Q ss_pred CCEEEEEecCCCeEEEEECCCC----cEEEeccCCCccCCCCcceEEEEEeCCEEEEEcCcCCCCCceEEEEEeeCCCC
Q 012755 355 NNQLYSADQATNVVKKYNKTNN----SWTVVKRLPVRANSFNGWGLAFKACGNSLLVIGGHRELQGEIIVLHSWDPTDG 429 (457)
Q Consensus 355 ~g~ly~~gg~~~~v~~Yd~~~~----~W~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~~~~~~v~~y~~~~~ 429 (457)
+++..+.+...+.+..||.... +|+...... .. .. .....-+++..+.|+.+. .+++||+.+.
T Consensus 345 ~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~--~~---~~-~~~~~~~~~~i~sg~~d~------~v~~~~~~s~ 411 (456)
T KOG0266|consen 345 NGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLV--RC---IF-SPTLSTGGKLIYSGSEDG------SVYVWDSSSG 411 (456)
T ss_pred CCcEEEEecCCCeEEEEEccCCcceeeecccCCcc--ee---Ee-cccccCCCCeEEEEeCCc------eEEEEeCCcc
Confidence 4444444444457777887754 333322210 10 00 111133677777776663 6888998863
No 164
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=67.87 E-value=2e+02 Score=31.81 Aligned_cols=90 Identities=17% Similarity=0.146 Sum_probs=41.6
Q ss_pred ccEEEEEecCccEEEEeCCCCcEEeCCCCCCCccccCCCe--eeEEeCCEEEEEceecCCcEEEEEECCCCcEE-eCCCC
Q 012755 160 EHWVYLACILMPWEAFDPLRQRWMRLPRMQCDECFTSADK--ESLAVGTQLLVFGRELSGFAIWMYSLIANCWS-KCPQM 236 (457)
Q Consensus 160 ~~~l~~~~~~~~~~~ydp~~~~W~~l~~~p~~~~~~~~~~--~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~-~l~~l 236 (457)
..+|++++. |...+.|..+.....|+.-...+. ...+.....++.|-. .+.+.+|..-+.+-. -+.++
T Consensus 25 gefi~tcgs-------dg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~--~~tv~~y~fps~~~~~iL~Rf 95 (933)
T KOG1274|consen 25 GEFICTCGS-------DGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSE--QNTVLRYKFPSGEEDTILARF 95 (933)
T ss_pred CCEEEEecC-------CCceEEeecCCcccCCchhhccCceeEEEeecccceEEeec--cceEEEeeCCCCCccceeeee
Confidence 346666654 444556766655333332221111 122333344454432 346788876655443 22333
Q ss_pred CCCccceeEEeeCCEEEEEeeec
Q 012755 237 NLPRCLFGSSSLGEVAIVAGGTD 259 (457)
Q Consensus 237 p~~r~~~~~~~~~~~iyv~GG~~ 259 (457)
..|- .+.++..+|+..++||.+
T Consensus 96 tlp~-r~~~v~g~g~~iaagsdD 117 (933)
T KOG1274|consen 96 TLPI-RDLAVSGSGKMIAAGSDD 117 (933)
T ss_pred eccc-eEEEEecCCcEEEeecCc
Confidence 2221 223344466666666643
No 165
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=67.64 E-value=1.5e+02 Score=30.39 Aligned_cols=67 Identities=13% Similarity=0.079 Sum_probs=38.2
Q ss_pred CCEEEEECCEEEEEecCCCeEEEEECCCCcEEEe--ccCCCccCCCCcceEEEEEeCCEEEEEcCcCCCCCceEEEEEee
Q 012755 348 PPLVAVVNNQLYSADQATNVVKKYNKTNNSWTVV--KRLPVRANSFNGWGLAFKACGNSLLVIGGHRELQGEIIVLHSWD 425 (457)
Q Consensus 348 ~~~~~~~~g~ly~~gg~~~~v~~Yd~~~~~W~~v--~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~~~~~~v~~y~ 425 (457)
+.+..-.+..|++--|....+..||...+.=..- ..-|. ..+ +..-+|.++++|-..+ .++.||
T Consensus 213 gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Pl-------stv-af~~~G~~L~aG~s~G------~~i~YD 278 (673)
T KOG4378|consen 213 GICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPL-------STV-AFSECGTYLCAGNSKG------ELIAYD 278 (673)
T ss_pred cceecCCccceEEEecccceEEEeecccccccceeeecCCc-------cee-eecCCceEEEeecCCc------eEEEEe
Confidence 3334445777877777888999999886543221 11111 111 2233566777665443 577788
Q ss_pred CCC
Q 012755 426 PTD 428 (457)
Q Consensus 426 ~~~ 428 (457)
...
T Consensus 279 ~R~ 281 (673)
T KOG4378|consen 279 MRS 281 (673)
T ss_pred ccc
Confidence 765
No 166
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=67.34 E-value=1.2e+02 Score=31.82 Aligned_cols=108 Identities=11% Similarity=0.043 Sum_probs=55.8
Q ss_pred CEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCcceeEEEEC--CEEEEEeccCCCCCCCceEEEEECCCCceE
Q 012755 250 EVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFMD--GKFYIIGGMSSPTDPLTCGEEYNLETRTWK 327 (457)
Q Consensus 250 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~--g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~ 327 (457)
-.||+.|- -.+++++|++.+.|-..-....+--+ ++.++ ..+.++||. ...++.+|+.+..-.
T Consensus 146 cDly~~gs-------g~evYRlNLEqGrfL~P~~~~~~~lN--~v~in~~hgLla~Gt~------~g~VEfwDpR~ksrv 210 (703)
T KOG2321|consen 146 CDLYLVGS-------GSEVYRLNLEQGRFLNPFETDSGELN--VVSINEEHGLLACGTE------DGVVEFWDPRDKSRV 210 (703)
T ss_pred ccEEEeec-------CcceEEEEccccccccccccccccce--eeeecCccceEEeccc------CceEEEecchhhhhh
Confidence 35676542 36799999999999543222111111 22222 336666653 346788998876422
Q ss_pred -EcC---CCCCCCCCCCCCCCCCCCCEEEEE-CCEE-EEEecCCCeEEEEECCCCc
Q 012755 328 -RIE---NMYPSNVGTQSNPAMSSPPLVAVV-NNQL-YSADQATNVVKKYNKTNNS 377 (457)
Q Consensus 328 -~~~---~~~~~~~~~~~~~~~r~~~~~~~~-~g~l-y~~gg~~~~v~~Yd~~~~~ 377 (457)
.+. ..+.. ++...... .++..+ |+-| ..+|-..+.++.||..+.+
T Consensus 211 ~~l~~~~~v~s~----pg~~~~~s-vTal~F~d~gL~~aVGts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 211 GTLDAASSVNSH----PGGDAAPS-VTALKFRDDGLHVAVGTSTGSVLIYDLRASK 261 (703)
T ss_pred eeeecccccCCC----ccccccCc-ceEEEecCCceeEEeeccCCcEEEEEcccCC
Confidence 111 11110 00111111 223333 4344 4567778899999987654
No 167
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.91 E-value=1.2e+02 Score=28.22 Aligned_cols=102 Identities=21% Similarity=0.375 Sum_probs=58.5
Q ss_pred EEEEEeeecCCCCccceEEEEeCCCCcEEEC----------------CCCCCCCcceeEEEECCEEEEEeccCCCCCCCc
Q 012755 251 VAIVAGGTDKNGCILKSAELYNSELGTWETL----------------PDMNLPRKLCSGFFMDGKFYIIGGMSSPTDPLT 314 (457)
Q Consensus 251 ~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~----------------~~~p~~r~~~~~~~~~g~iyv~GG~~~~~~~~~ 314 (457)
+-++.||.+. +-.+|.||. ++|..- |....++...+.+..+|++++.-
T Consensus 176 krlvSgGcDn----~VkiW~~~~--~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt---------- 239 (299)
T KOG1332|consen 176 KRLVSGGCDN----LVKIWKFDS--DSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT---------- 239 (299)
T ss_pred ceeeccCCcc----ceeeeecCC--cchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEE----------
Confidence 4577788753 345565654 355431 23334555555566677766642
Q ss_pred eEEEEECCCCceEEc--CCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEECCCC-cEEEecc
Q 012755 315 CGEEYNLETRTWKRI--ENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQATNVVKKYNKTNN-SWTVVKR 383 (457)
Q Consensus 315 ~~~~yd~~t~~W~~~--~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~~~~v~~Yd~~~~-~W~~v~~ 383 (457)
-+.+.+.|+.. .+.+. ...+..-.+-|.++.+++..+.|..+-+..+ +|.++..
T Consensus 240 ----~~~e~e~wk~tll~~f~~-----------~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 240 ----KDEEYEPWKKTLLEEFPD-----------VVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred ----ecCccCcccccccccCCc-----------ceEEEEEeccccEEEEecCCcEEEEEEeCCCCcEEEccc
Confidence 23345567643 23222 1223344567778888777788888877654 9998864
No 168
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=64.10 E-value=1.5e+02 Score=29.00 Aligned_cols=151 Identities=13% Similarity=0.176 Sum_probs=76.0
Q ss_pred cceEEEEeCCCCcEEECCC--CCC-CCcceeEEEECCE-EEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCC
Q 012755 265 LKSAELYNSELGTWETLPD--MNL-PRKLCSGFFMDGK-FYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQ 340 (457)
Q Consensus 265 ~~~v~~yd~~t~~W~~~~~--~p~-~r~~~~~~~~~g~-iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~ 340 (457)
...+.+|+...+.-+...+ .+. .-..|-+..-+++ .|++...++ .-.++.||+..++.+++..+...|.
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~s----tV~v~~y~~~~g~~~~lQ~i~tlP~--- 238 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNS----TVDVLEYNPAVGKFEELQTIDTLPE--- 238 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCC----EEEEEEEcCCCceEEEeeeeccCcc---
Confidence 4678888888666544321 111 1112333333555 688754321 2345678888788888875443110
Q ss_pred CCCCCCCCCEEE--EECC-EEEEEecCCCeEEEEE--CCCCcEEEeccCCCccCCCCcceEEEEEeCCEEEEEcCcCCCC
Q 012755 341 SNPAMSSPPLVA--VVNN-QLYSADQATNVVKKYN--KTNNSWTVVKRLPVRANSFNGWGLAFKACGNSLLVIGGHRELQ 415 (457)
Q Consensus 341 ~~~~~r~~~~~~--~~~g-~ly~~gg~~~~v~~Yd--~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~ 415 (457)
.-....+.+++ .-+| .||+..-..+++.+|. +.++.-+.+...+.....++.+ .+ ..+|+++++-+....
T Consensus 239 -dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F--~i-~~~g~~Liaa~q~sd- 313 (346)
T COG2706 239 -DFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDF--NI-NPSGRFLIAANQKSD- 313 (346)
T ss_pred -ccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccc--ee-CCCCCEEEEEccCCC-
Confidence 11111222222 2255 4777765567777774 5555555554333322222222 22 345555555545432
Q ss_pred CceEEEEEeeCCCC
Q 012755 416 GEIIVLHSWDPTDG 429 (457)
Q Consensus 416 ~~~~~v~~y~~~~~ 429 (457)
...++.-|++++
T Consensus 314 --~i~vf~~d~~TG 325 (346)
T COG2706 314 --NITVFERDKETG 325 (346)
T ss_pred --cEEEEEEcCCCc
Confidence 346777788885
No 169
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=61.93 E-value=1.4e+02 Score=27.85 Aligned_cols=139 Identities=9% Similarity=0.100 Sum_probs=72.3
Q ss_pred eCCEEEEEceecCCcEEEEEECCCCcEEeCCCCCCCccceeEEee--CCEEEEEeeecCCCCccceEEEEeCCCCcEEEC
Q 012755 204 VGTQLLVFGRELSGFAIWMYSLIANCWSKCPQMNLPRCLFGSSSL--GEVAIVAGGTDKNGCILKSAELYNSELGTWETL 281 (457)
Q Consensus 204 ~~~~lyv~GG~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 281 (457)
..+.|+..||+ ..++..|..+++.++.-. ...-+-|+++.- ++.| +.|+.+ ..+-+.|.+|++-...
T Consensus 125 ~enSi~~AgGD---~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~~~~qi-lsG~ED------GtvRvWd~kt~k~v~~ 193 (325)
T KOG0649|consen 125 SENSILFAGGD---GVIYQVDLEDGRIQREYR-GHTDYVHSVVGRNANGQI-LSGAED------GTVRVWDTKTQKHVSM 193 (325)
T ss_pred CCCcEEEecCC---eEEEEEEecCCEEEEEEc-CCcceeeeeeecccCcce-eecCCC------ccEEEEeccccceeEE
Confidence 35778888875 368899999998766421 111233444432 2333 334433 3567789998886554
Q ss_pred -CC-----CCCCCcc--eeEEEECCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEE
Q 012755 282 -PD-----MNLPRKL--CSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAV 353 (457)
Q Consensus 282 -~~-----~p~~r~~--~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~ 353 (457)
.+ ...|..+ -.+...+..-.|+||... .-.+++...+-+.+-++|. + ...|.
T Consensus 194 ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~-------lslwhLrsse~t~vfpipa-----------~--v~~v~ 253 (325)
T KOG0649|consen 194 IEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPK-------LSLWHLRSSESTCVFPIPA-----------R--VHLVD 253 (325)
T ss_pred eccccChhhcCcccCceeEEEeccCceEEecCCCc-------eeEEeccCCCceEEEeccc-----------c--eeEee
Confidence 22 1122121 234444666667776322 2335555555554444432 1 22344
Q ss_pred ECCEEEEEecCCCeEEEEEC
Q 012755 354 VNNQLYSADQATNVVKKYNK 373 (457)
Q Consensus 354 ~~g~ly~~gg~~~~v~~Yd~ 373 (457)
+.+...+++|..+.|..|..
T Consensus 254 F~~d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 254 FVDDCVLIGGEGNHVQSYTL 273 (325)
T ss_pred eecceEEEeccccceeeeee
Confidence 44455555555566666544
No 170
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=59.20 E-value=1.3e+02 Score=26.79 Aligned_cols=65 Identities=12% Similarity=0.014 Sum_probs=35.9
Q ss_pred CCEEEEEceecCCcEEEEEECCCCcEEeCCCCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCC
Q 012755 205 GTQLLVFGRELSGFAIWMYSLIANCWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELG 276 (457)
Q Consensus 205 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 276 (457)
+..+.++-|.. ...+..||.....=..+ +........-.-.|+..++||.... ...+.+||..+.
T Consensus 71 g~~favi~g~~-~~~v~lyd~~~~~i~~~---~~~~~n~i~wsP~G~~l~~~g~~n~---~G~l~~wd~~~~ 135 (194)
T PF08662_consen 71 GNEFAVIYGSM-PAKVTLYDVKGKKIFSF---GTQPRNTISWSPDGRFLVLAGFGNL---NGDLEFWDVRKK 135 (194)
T ss_pred CCEEEEEEccC-CcccEEEcCcccEeEee---cCCCceEEEECCCCCEEEEEEccCC---CcEEEEEECCCC
Confidence 45555554432 23788899864333333 2222222222336778888887532 357889998733
No 171
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=56.46 E-value=99 Score=28.12 Aligned_cols=108 Identities=9% Similarity=-0.012 Sum_probs=64.1
Q ss_pred eEEeeCCEEEEEeeecCCCCccceEEEEeCCCCc--EEECCCCCCCCcceeEEEECCEEEEEeccCCCCCCCceEEEEEC
Q 012755 244 GSSSLGEVAIVAGGTDKNGCILKSAELYNSELGT--WETLPDMNLPRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNL 321 (457)
Q Consensus 244 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~ 321 (457)
+....+++||..-|..+. +.+.++|..+++ |++--+ |..-.+-+.+..++.+|..-=. -.....||+
T Consensus 50 GL~~~~g~i~esTG~yg~----S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~------egvaf~~d~ 118 (262)
T COG3823 50 GLEYLDGHILESTGLYGF----SKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWK------EGVAFKYDA 118 (262)
T ss_pred ceeeeCCEEEEecccccc----ceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEec------cceeEEECh
Confidence 455668889888776543 678899998765 654322 2223355667889999987311 123456766
Q ss_pred CCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEECCC
Q 012755 322 ETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQATNVVKKYNKTN 375 (457)
Q Consensus 322 ~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~~~~v~~Yd~~~ 375 (457)
.+ ..++...+. .--+.+++.-+..|.+-.| ...+..-||++
T Consensus 119 ~t--~~~lg~~~y----------~GeGWgLt~d~~~LimsdG-satL~frdP~t 159 (262)
T COG3823 119 DT--LEELGRFSY----------EGEGWGLTSDDKNLIMSDG-SATLQFRDPKT 159 (262)
T ss_pred HH--hhhhccccc----------CCcceeeecCCcceEeeCC-ceEEEecCHHH
Confidence 44 444444333 2334456655555555444 35666667765
No 172
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.42 E-value=1.8e+02 Score=27.14 Aligned_cols=72 Identities=19% Similarity=0.438 Sum_probs=38.1
Q ss_pred CCCEEEEECCEEEEEecCCCeEEEEECCCCcEEEe--ccCCCccCCCCcceEEEEEeCCEEEEEcCcCCCCCceEEEEEe
Q 012755 347 SPPLVAVVNNQLYSADQATNVVKKYNKTNNSWTVV--KRLPVRANSFNGWGLAFKACGNSLLVIGGHRELQGEIIVLHSW 424 (457)
Q Consensus 347 ~~~~~~~~~g~ly~~gg~~~~v~~Yd~~~~~W~~v--~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~~~~~~v~~y 424 (457)
...+.+..+|++++. .-+.+..+|+.- ...|... +.+.--..++.|-|-||.+ .+.+|
T Consensus 224 s~iAS~SqDg~viIw--------t~~~e~e~wk~tll~~f~~~~-----w~vSWS~sGn~LaVs~GdN-------kvtlw 283 (299)
T KOG1332|consen 224 STIASCSQDGTVIIW--------TKDEEYEPWKKTLLEEFPDVV-----WRVSWSLSGNILAVSGGDN-------KVTLW 283 (299)
T ss_pred eeeEEecCCCcEEEE--------EecCccCcccccccccCCcce-----EEEEEeccccEEEEecCCc-------EEEEE
Confidence 333344445555443 234556788753 3344332 2222323455666666654 47777
Q ss_pred eCCCCCCCCCCeeEeccc
Q 012755 425 DPTDGNSGEAQWNELAVR 442 (457)
Q Consensus 425 ~~~~~~w~~~~W~~l~~~ 442 (457)
-+..+ | +|.+++..
T Consensus 284 ke~~~--G--kw~~v~~~ 297 (299)
T KOG1332|consen 284 KENVD--G--KWEEVGEV 297 (299)
T ss_pred EeCCC--C--cEEEcccc
Confidence 77665 2 79988753
No 173
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=54.64 E-value=2.6e+02 Score=28.84 Aligned_cols=88 Identities=8% Similarity=0.031 Sum_probs=48.7
Q ss_pred eEEEEeCCCCc----EEECCCCCCCCcceeEEEECCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCC
Q 012755 267 SAELYNSELGT----WETLPDMNLPRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSN 342 (457)
Q Consensus 267 ~v~~yd~~t~~----W~~~~~~p~~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~ 342 (457)
.+..||..... |.+...-|. .+.+..-.+.+|+|.=|++ ..+..||.....=+.. +.
T Consensus 188 ~VtlwDv~g~sp~~~~~~~HsAP~--~gicfspsne~l~vsVG~D------kki~~yD~~s~~s~~~--l~--------- 248 (673)
T KOG4378|consen 188 AVTLWDVQGMSPIFHASEAHSAPC--RGICFSPSNEALLVSVGYD------KKINIYDIRSQASTDR--LT--------- 248 (673)
T ss_pred eEEEEeccCCCcccchhhhccCCc--CcceecCCccceEEEeccc------ceEEEeecccccccce--ee---------
Confidence 45666665443 554443332 2223334477788776654 4567788875442211 10
Q ss_pred CCCCCCCEEEEE--CCEEEEEecCCCeEEEEECCC
Q 012755 343 PAMSSPPLVAVV--NNQLYSADQATNVVKKYNKTN 375 (457)
Q Consensus 343 ~~~r~~~~~~~~--~g~ly~~gg~~~~v~~Yd~~~ 375 (457)
.....+.+.+ +|.+.++|...+.+..||...
T Consensus 249 --y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 249 --YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred --ecCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence 1111223333 678888888888999999854
No 174
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=54.38 E-value=1.9e+02 Score=27.02 Aligned_cols=152 Identities=17% Similarity=0.196 Sum_probs=78.9
Q ss_pred CcEEECCCCCC-----CCcceeEEE-ECCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCC
Q 012755 276 GTWETLPDMNL-----PRKLCSGFF-MDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPP 349 (457)
Q Consensus 276 ~~W~~~~~~p~-----~r~~~~~~~-~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~ 349 (457)
.-|+..+|+.. |-.++-... -.|.|+..||. ..++..|.++++.++.-.-. ..+-|
T Consensus 99 ~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD-------~~~y~~dlE~G~i~r~~rGH-----------tDYvH 160 (325)
T KOG0649|consen 99 RLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD-------GVIYQVDLEDGRIQREYRGH-----------TDYVH 160 (325)
T ss_pred hhhhhcCccccCcccCCccceeEeccCCCcEEEecCC-------eEEEEEEecCCEEEEEEcCC-----------cceee
Confidence 34887777644 211211111 35778888763 35788999999987664321 23445
Q ss_pred EEEEE--CCEEEEEecCCCeEEEEECCCCcEEEec-cCCCccCCCCcce--EEEEEeCCEEEEEcCcCCCCCceEEEEEe
Q 012755 350 LVAVV--NNQLYSADQATNVVKKYNKTNNSWTVVK-RLPVRANSFNGWG--LAFKACGNSLLVIGGHRELQGEIIVLHSW 424 (457)
Q Consensus 350 ~~~~~--~g~ly~~gg~~~~v~~Yd~~~~~W~~v~-~~p~~~~~~~~~~--~~~~~~~g~lyv~GG~~~~~~~~~~v~~y 424 (457)
+++.- +++| +-|+..+.+..+|..+.+=..+- +-..+...+..+| ..+.+.+...+|.||-. .+-.|
T Consensus 161 ~vv~R~~~~qi-lsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp-------~lslw 232 (325)
T KOG0649|consen 161 SVVGRNANGQI-LSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP-------KLSLW 232 (325)
T ss_pred eeeecccCcce-eecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCC-------ceeEE
Confidence 55542 3444 35667889999999988665542 2111111111122 23445566666666533 13334
Q ss_pred eCCCCCCCCCCeeEeccccccCceEEeeeee
Q 012755 425 DPTDGNSGEAQWNELAVRERAGAFVYNCAVM 455 (457)
Q Consensus 425 ~~~~~~w~~~~W~~l~~~~~~~~~~~~~~~~ 455 (457)
+...- .-.+=-.++.+-+.-.|+-+|.+.
T Consensus 233 hLrss--e~t~vfpipa~v~~v~F~~d~vl~ 261 (325)
T KOG0649|consen 233 HLRSS--ESTCVFPIPARVHLVDFVDDCVLI 261 (325)
T ss_pred eccCC--CceEEEecccceeEeeeecceEEE
Confidence 44331 000112344444555666666554
No 175
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=52.89 E-value=40 Score=32.58 Aligned_cols=140 Identities=14% Similarity=0.144 Sum_probs=79.1
Q ss_pred CcEEE--CCCC-CCCCcc-eeEEEECCE-EEEE--eccCC----CCCCCceEEEEECCCCceEEcC-CCCCCCCCCCCCC
Q 012755 276 GTWET--LPDM-NLPRKL-CSGFFMDGK-FYII--GGMSS----PTDPLTCGEEYNLETRTWKRIE-NMYPSNVGTQSNP 343 (457)
Q Consensus 276 ~~W~~--~~~~-p~~r~~-~~~~~~~g~-iyv~--GG~~~----~~~~~~~~~~yd~~t~~W~~~~-~~~~~~~~~~~~~ 343 (457)
-.|+. +..+ |..|++ -++|..+|+ -||. |-.+. .....+...+.|..+++=-.-. .||.
T Consensus 136 P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~evl~~GLsmPh--------- 206 (335)
T TIGR03032 136 PLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALSQSDVADGWREGRRDGGCVIDIPSGEVVASGLSMPH--------- 206 (335)
T ss_pred cccCCccccccCccCceeecceeeeCCeEEEEEEeeccCCcccccccccCCeEEEEeCCCCEEEcCccCCc---------
Confidence 45763 3333 445653 356677777 4543 21110 0112344566787777422111 2222
Q ss_pred CCCCCCEEEEECCEEEEEecCCCeEEEEECCCCcEEEeccCCCccCCCCcceEEEEEeCCEEEEEcCcCCC-C-------
Q 012755 344 AMSSPPLVAVVNNQLYSADQATNVVKKYNKTNNSWTVVKRLPVRANSFNGWGLAFKACGNSLLVIGGHREL-Q------- 415 (457)
Q Consensus 344 ~~r~~~~~~~~~g~ly~~gg~~~~v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~~-~------- 415 (457)
+---.+|+||+.....+.+..+|+++++.+.+..+|...+ + .+. . |.+.++|-.... .
T Consensus 207 ------SPRWhdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~r---G--L~f--~-G~llvVgmSk~R~~~~f~glp 272 (335)
T TIGR03032 207 ------SPRWYQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTR---G--LAF--A-GDFAFVGLSKLRESRVFGGLP 272 (335)
T ss_pred ------CCcEeCCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCc---c--cce--e-CCEEEEEeccccCCCCcCCCc
Confidence 2234789999999889999999999999999998886543 2 322 2 666666632211 0
Q ss_pred ------CceEEEEEeeCCCCCCCCCCeeEec
Q 012755 416 ------GEIIVLHSWDPTDGNSGEAQWNELA 440 (457)
Q Consensus 416 ------~~~~~v~~y~~~~~~w~~~~W~~l~ 440 (457)
...--+++.|..++ .-+.|-++.
T Consensus 273 l~~~l~~~~CGv~vidl~tG--~vv~~l~fe 301 (335)
T TIGR03032 273 IEERLDALGCGVAVIDLNSG--DVVHWLRFE 301 (335)
T ss_pred hhhhhhhhcccEEEEECCCC--CEEEEEEeC
Confidence 01134667777775 334566554
No 176
>PTZ00420 coronin; Provisional
Probab=52.84 E-value=3.1e+02 Score=29.15 Aligned_cols=60 Identities=13% Similarity=0.097 Sum_probs=32.5
Q ss_pred EEEEEeeecCCCCccceEEEEeCCCCcE-EECCCCCCCCcceeEE-EECCEEEEEeccCCCCCCCceEEEEECCCCc
Q 012755 251 VAIVAGGTDKNGCILKSAELYNSELGTW-ETLPDMNLPRKLCSGF-FMDGKFYIIGGMSSPTDPLTCGEEYNLETRT 325 (457)
Q Consensus 251 ~iyv~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~~p~~r~~~~~~-~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~ 325 (457)
.+++.||.+ ..+.++|..+++= ..+. .+ ..-.++. ..+|.+.+.++.+ ..+.+||+.+++
T Consensus 139 ~iLaSgS~D------gtIrIWDl~tg~~~~~i~-~~--~~V~SlswspdG~lLat~s~D------~~IrIwD~Rsg~ 200 (568)
T PTZ00420 139 YIMCSSGFD------SFVNIWDIENEKRAFQIN-MP--KKLSSLKWNIKGNLLSGTCVG------KHMHIIDPRKQE 200 (568)
T ss_pred eEEEEEeCC------CeEEEEECCCCcEEEEEe-cC--CcEEEEEECCCCCEEEEEecC------CEEEEEECCCCc
Confidence 455556643 4677889887651 1111 11 1111222 2367777766532 357889998764
No 177
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=52.06 E-value=2.6e+02 Score=27.99 Aligned_cols=186 Identities=10% Similarity=0.008 Sum_probs=94.8
Q ss_pred CcEEEEEECCCCcEE--eCCCCCCCcc-ceeE-EeeCCEEEEEeeecCCCCccceEEEEeCCCC-----cEEECCCCCCC
Q 012755 217 GFAIWMYSLIANCWS--KCPQMNLPRC-LFGS-SSLGEVAIVAGGTDKNGCILKSAELYNSELG-----TWETLPDMNLP 287 (457)
Q Consensus 217 ~~~v~~yd~~t~~W~--~l~~lp~~r~-~~~~-~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~-----~W~~~~~~p~~ 287 (457)
...++.+...+..-. .+-.-+.+.. ...+ ..-+++..++.-.... . .+.++..|.... .|+.+.+--..
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~-~-~s~v~~~d~~~~~~~~~~~~~l~~~~~~ 278 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGT-S-ESEVYLLDLDDGGSPDAKPKLLSPREDG 278 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSS-S-EEEEEEEECCCTTTSS-SEEEEEESSSS
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccc-c-CCeEEEEeccccCCCcCCcEEEeCCCCc
Confidence 457888887776543 2211122222 1122 2234444343332222 2 478999999875 78887542211
Q ss_pred CcceeEEEECCEEEEEeccCCCCCCCceEEEEECCCCc---eE-EcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEe-
Q 012755 288 RKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRT---WK-RIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSAD- 362 (457)
Q Consensus 288 r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~---W~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~g- 362 (457)
....+...++.+|+....+ .....+..+++.+.. |. .+.+... ...-..+...++.|++..
T Consensus 279 -~~~~v~~~~~~~yi~Tn~~---a~~~~l~~~~l~~~~~~~~~~~l~~~~~----------~~~l~~~~~~~~~Lvl~~~ 344 (414)
T PF02897_consen 279 -VEYYVDHHGDRLYILTNDD---APNGRLVAVDLADPSPAEWWTVLIPEDE----------DVSLEDVSLFKDYLVLSYR 344 (414)
T ss_dssp --EEEEEEETTEEEEEE-TT----TT-EEEEEETTSTSGGGEEEEEE--SS----------SEEEEEEEEETTEEEEEEE
T ss_pred -eEEEEEccCCEEEEeeCCC---CCCcEEEEecccccccccceeEEcCCCC----------ceeEEEEEEECCEEEEEEE
Confidence 2233445699999986522 234678888888765 66 4433221 123334556688888764
Q ss_pred -cCCCeEEEEECCCCcEEEe-ccCCCccCCCCcceEEEEE---eCCEE-EEEcCcCCCCCceEEEEEeeCCCC
Q 012755 363 -QATNVVKKYNKTNNSWTVV-KRLPVRANSFNGWGLAFKA---CGNSL-LVIGGHRELQGEIIVLHSWDPTDG 429 (457)
Q Consensus 363 -g~~~~v~~Yd~~~~~W~~v-~~~p~~~~~~~~~~~~~~~---~~g~l-yv~GG~~~~~~~~~~v~~y~~~~~ 429 (457)
+....+.+||+. ..|... ..+|.... +.... ..+.+ +.+.+... ...++.||..++
T Consensus 345 ~~~~~~l~v~~~~-~~~~~~~~~~p~~g~------v~~~~~~~~~~~~~~~~ss~~~----P~~~y~~d~~t~ 406 (414)
T PF02897_consen 345 ENGSSRLRVYDLD-DGKESREIPLPEAGS------VSGVSGDFDSDELRFSYSSFTT----PPTVYRYDLATG 406 (414)
T ss_dssp ETTEEEEEEEETT--TEEEEEEESSSSSE------EEEEES-TT-SEEEEEEEETTE----EEEEEEEETTTT
T ss_pred ECCccEEEEEECC-CCcEEeeecCCcceE------EeccCCCCCCCEEEEEEeCCCC----CCEEEEEECCCC
Confidence 235578999998 233332 23332210 11111 12343 33444432 358999999997
No 178
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=51.29 E-value=2.8e+02 Score=28.18 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=18.8
Q ss_pred EeCCEEEEEcCcCCCCCceEEEEEeeCCC
Q 012755 400 ACGNSLLVIGGHRELQGEIIVLHSWDPTD 428 (457)
Q Consensus 400 ~~~g~lyv~GG~~~~~~~~~~v~~y~~~~ 428 (457)
..+|.+.+.|+.++ .+.+||+.+
T Consensus 286 s~DgtlLlSGd~dg------~VcvWdi~S 308 (476)
T KOG0646|consen 286 STDGTLLLSGDEDG------KVCVWDIYS 308 (476)
T ss_pred ecCccEEEeeCCCC------CEEEEecch
Confidence 45999999999885 477888876
No 179
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=50.30 E-value=1.9e+02 Score=28.97 Aligned_cols=126 Identities=17% Similarity=0.200 Sum_probs=70.6
Q ss_pred EECCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEE-EECCEEEEEecCCCeEEEEEC
Q 012755 295 FMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVA-VVNNQLYSADQATNVVKKYNK 373 (457)
Q Consensus 295 ~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~g~ly~~gg~~~~v~~Yd~ 373 (457)
..+|.+...||.+..+ .++|+.|+.-..+-.-. ..-..++. .-||...+-|+.-+.+.++|.
T Consensus 312 ~~DGSL~~tGGlD~~~------RvWDlRtgr~im~L~gH-----------~k~I~~V~fsPNGy~lATgs~Dnt~kVWDL 374 (459)
T KOG0272|consen 312 QPDGSLAATGGLDSLG------RVWDLRTGRCIMFLAGH-----------IKEILSVAFSPNGYHLATGSSDNTCKVWDL 374 (459)
T ss_pred cCCCceeeccCccchh------heeecccCcEEEEeccc-----------ccceeeEeECCCceEEeecCCCCcEEEeee
Confidence 4589999999876543 45777776544321111 11111222 237888888888888989988
Q ss_pred CCCcEEEeccCCCccCCCCcceEEEEEeCCEEEEEcCcCCCCCceEEEEEeeCCCCCCCCCCeeEeccccccCceEEeee
Q 012755 374 TNNSWTVVKRLPVRANSFNGWGLAFKACGNSLLVIGGHRELQGEIIVLHSWDPTDGNSGEAQWNELAVRERAGAFVYNCA 453 (457)
Q Consensus 374 ~~~~W~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~~~~~~v~~y~~~~~~w~~~~W~~l~~~~~~~~~~~~~~ 453 (457)
....= +..+|....-- ..+..-...|+.++..+++. .+.+|... .|+.+...-.+-.=|.+|.
T Consensus 375 R~r~~--ly~ipAH~nlV--S~Vk~~p~~g~fL~TasyD~------t~kiWs~~-------~~~~~ksLaGHe~kV~s~D 437 (459)
T KOG0272|consen 375 RMRSE--LYTIPAHSNLV--SQVKYSPQEGYFLVTASYDN------TVKIWSTR-------TWSPLKSLAGHEGKVISLD 437 (459)
T ss_pred ccccc--ceecccccchh--hheEecccCCeEEEEcccCc------ceeeecCC-------CcccchhhcCCccceEEEE
Confidence 75432 44455433210 01111123567777777663 34455554 4888877665655555554
Q ss_pred e
Q 012755 454 V 454 (457)
Q Consensus 454 ~ 454 (457)
+
T Consensus 438 i 438 (459)
T KOG0272|consen 438 I 438 (459)
T ss_pred e
Confidence 4
No 180
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=49.40 E-value=3.8e+02 Score=29.19 Aligned_cols=153 Identities=13% Similarity=0.079 Sum_probs=78.2
Q ss_pred EeCCEEEEEceecCCcEEEEEECCCCcEE-eCCCCCCCccceeEE--eeCCEEEEEeeecCCCCccceEEEEeCCCCc-E
Q 012755 203 AVGTQLLVFGRELSGFAIWMYSLIANCWS-KCPQMNLPRCLFGSS--SLGEVAIVAGGTDKNGCILKSAELYNSELGT-W 278 (457)
Q Consensus 203 ~~~~~lyv~GG~~~~~~v~~yd~~t~~W~-~l~~lp~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~-W 278 (457)
..+|.+.+.|+++. .|.+||..++-.. .... .-+.+++. ...++..+..-.+ .+|-.+|.+..+ .
T Consensus 359 SpDgq~iaTG~eDg--KVKvWn~~SgfC~vTFte---Hts~Vt~v~f~~~g~~llssSLD------GtVRAwDlkRYrNf 427 (893)
T KOG0291|consen 359 SPDGQLIATGAEDG--KVKVWNTQSGFCFVTFTE---HTSGVTAVQFTARGNVLLSSSLD------GTVRAWDLKRYRNF 427 (893)
T ss_pred CCCCcEEEeccCCC--cEEEEeccCceEEEEecc---CCCceEEEEEEecCCEEEEeecC------CeEEeeeeccccee
Confidence 35788888887644 6788887765332 1121 12222222 1244444443332 245556665544 2
Q ss_pred EECCCCCCCCcceeEEEEC--CEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECC
Q 012755 279 ETLPDMNLPRKLCSGFFMD--GKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNN 356 (457)
Q Consensus 279 ~~~~~~p~~r~~~~~~~~~--g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g 356 (457)
+.. ..|.+. ..+.+.++ |.|.++|+.+ .-.+.+++.+|++--.+=.-.. .+-.+ .+....+
T Consensus 428 RTf-t~P~p~-QfscvavD~sGelV~AG~~d-----~F~IfvWS~qTGqllDiLsGHE---------gPVs~-l~f~~~~ 490 (893)
T KOG0291|consen 428 RTF-TSPEPI-QFSCVAVDPSGELVCAGAQD-----SFEIFVWSVQTGQLLDILSGHE---------GPVSG-LSFSPDG 490 (893)
T ss_pred eee-cCCCce-eeeEEEEcCCCCEEEeeccc-----eEEEEEEEeecCeeeehhcCCC---------Cccee-eEEcccc
Confidence 222 223333 44455555 8888887653 3467888888887554422211 01111 1123355
Q ss_pred EEEEEecCCCeEEEEECCCCcEEEeccC
Q 012755 357 QLYSADQATNVVKKYNKTNNSWTVVKRL 384 (457)
Q Consensus 357 ~ly~~gg~~~~v~~Yd~~~~~W~~v~~~ 384 (457)
.+.+-|..-+.|..||.-. +|.++..+
T Consensus 491 ~~LaS~SWDkTVRiW~if~-s~~~vEtl 517 (893)
T KOG0291|consen 491 SLLASGSWDKTVRIWDIFS-SSGTVETL 517 (893)
T ss_pred CeEEeccccceEEEEEeec-cCceeeeE
Confidence 5666666666777777643 34444433
No 181
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=48.53 E-value=2.5e+02 Score=26.87 Aligned_cols=191 Identities=12% Similarity=0.078 Sum_probs=90.9
Q ss_pred EEeCCEEEEEceecCCcEEEEEECCCCcEEeCC----CCCCCccceeEEe-eC-CEEEEEeeecCCCCccceEEEEeCCC
Q 012755 202 LAVGTQLLVFGRELSGFAIWMYSLIANCWSKCP----QMNLPRCLFGSSS-LG-EVAIVAGGTDKNGCILKSAELYNSEL 275 (457)
Q Consensus 202 ~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~l~----~lp~~r~~~~~~~-~~-~~iyv~GG~~~~~~~~~~v~~yd~~t 275 (457)
.+..+.....||.+ +..-+|+..+..=.... .++.-....+++. ++ +.|.-..| -...-..|.++
T Consensus 105 ~sPSg~~VAcGGLd--N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SG-------D~TCalWDie~ 175 (343)
T KOG0286|consen 105 YSPSGNFVACGGLD--NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSG-------DMTCALWDIET 175 (343)
T ss_pred ECCCCCeEEecCcC--ceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCC-------CceEEEEEccc
Confidence 34566667777753 45677877754222111 1222222223332 33 34433222 13455567777
Q ss_pred CcEEECCC-CCCCCcceeEEEECCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEE--
Q 012755 276 GTWETLPD-MNLPRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVA-- 352 (457)
Q Consensus 276 ~~W~~~~~-~p~~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~-- 352 (457)
+.=...-. -.......+..-.+++.||.||.+.. ...+|.....-.+. .+. ...-..++
T Consensus 176 g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~------aklWD~R~~~c~qt--F~g----------hesDINsv~f 237 (343)
T KOG0286|consen 176 GQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKS------AKLWDVRSGQCVQT--FEG----------HESDINSVRF 237 (343)
T ss_pred ceEEEEecCCcccEEEEecCCCCCCeEEecccccc------eeeeeccCcceeEe--ecc----------cccccceEEE
Confidence 65332200 00000000001116789999887643 34567666543322 111 11111122
Q ss_pred EECCEEEEEecCCCeEEEEECCCCcEEEeccCCCccCCCCcceEEEEEeCCEEEEEcCcCCCCCceEEEEEeeCCC
Q 012755 353 VVNNQLYSADQATNVVKKYNKTNNSWTVVKRLPVRANSFNGWGLAFKACGNSLLVIGGHRELQGEIIVLHSWDPTD 428 (457)
Q Consensus 353 ~~~g~ly~~gg~~~~v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~~~~~~v~~y~~~~ 428 (457)
.-+|.-++-|..-.....||...++=-.+-.-+ .... +.........|+|+..|+.+. .+.+||.-.
T Consensus 238 fP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~--~~~~-gitSv~FS~SGRlLfagy~d~------~c~vWDtlk 304 (343)
T KOG0286|consen 238 FPSGDAFATGSDDATCRLYDLRADQELAVYSHD--SIIC-GITSVAFSKSGRLLFAGYDDF------TCNVWDTLK 304 (343)
T ss_pred ccCCCeeeecCCCceeEEEeecCCcEEeeeccC--cccC-CceeEEEcccccEEEeeecCC------ceeEeeccc
Confidence 226777777776778888999887532222211 1111 122223456889888885542 366677654
No 182
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=47.49 E-value=48 Score=19.46 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=18.5
Q ss_pred EeCCEEEEEcCcCCCCCceEEEEEeeCCCCCCCCCCee
Q 012755 400 ACGNSLLVIGGHRELQGEIIVLHSWDPTDGNSGEAQWN 437 (457)
Q Consensus 400 ~~~g~lyv~GG~~~~~~~~~~v~~y~~~~~~w~~~~W~ 437 (457)
..++.+|+.. .+ ..++.+|+++ |+..|+
T Consensus 4 ~~~~~v~~~~-~~------g~l~a~d~~~---G~~~W~ 31 (33)
T smart00564 4 LSDGTVYVGS-TD------GTLYALDAKT---GEILWT 31 (33)
T ss_pred EECCEEEEEc-CC------CEEEEEEccc---CcEEEE
Confidence 3466766643 32 1688899987 777886
No 183
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=46.16 E-value=4e+02 Score=28.48 Aligned_cols=68 Identities=13% Similarity=0.180 Sum_probs=43.4
Q ss_pred CCEEEEEecCCCeEEEEECCCCcEEEeccCCCccCCCCcceEEEEEeCCEEEEEcCcCCCCCceEEEEEeeCCCC
Q 012755 355 NNQLYSADQATNVVKKYNKTNNSWTVVKRLPVRANSFNGWGLAFKACGNSLLVIGGHRELQGEIIVLHSWDPTDG 429 (457)
Q Consensus 355 ~g~ly~~gg~~~~v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~~~~~~v~~y~~~~~ 429 (457)
+++++++.-...+++.++.++-+-+++.+.........-...+.-..|+.|.++++.. .|++|+.++.
T Consensus 440 ~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g-------~I~v~nl~~~ 507 (691)
T KOG2048|consen 440 KNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRG-------QIFVYNLETL 507 (691)
T ss_pred CceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccc-------eEEEEEcccc
Confidence 5566666555668888888888887776543332222122233334577888888543 5899999884
No 184
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=44.61 E-value=3e+02 Score=26.59 Aligned_cols=216 Identities=10% Similarity=0.066 Sum_probs=88.0
Q ss_pred EEEEEecCccEEEEeCCCCcEEeCCCC-CCCccccCCCeeeEE-eCCEEEEEceecCCcEEEEEECCCCcEEeCCCCCCC
Q 012755 162 WVYLACILMPWEAFDPLRQRWMRLPRM-QCDECFTSADKESLA-VGTQLLVFGRELSGFAIWMYSLIANCWSKCPQMNLP 239 (457)
Q Consensus 162 ~l~~~~~~~~~~~ydp~~~~W~~l~~~-p~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~v~~yd~~t~~W~~l~~lp~~ 239 (457)
..|+++...-+..-.-.-.+|.+++.. +.|-... .+.+ -++.++++|.. ..+++-.-.-.+|+.+..-..
T Consensus 73 ~g~ivG~~g~ll~T~DgG~tW~~v~l~~~lpgs~~----~i~~l~~~~~~l~~~~---G~iy~T~DgG~tW~~~~~~~~- 144 (302)
T PF14870_consen 73 EGWIVGEPGLLLHTTDGGKTWERVPLSSKLPGSPF----GITALGDGSAELAGDR---GAIYRTTDGGKTWQAVVSETS- 144 (302)
T ss_dssp EEEEEEETTEEEEESSTTSS-EE----TT-SS-EE----EEEEEETTEEEEEETT-----EEEESSTTSSEEEEE-S---
T ss_pred ceEEEcCCceEEEecCCCCCcEEeecCCCCCCCee----EEEEcCCCcEEEEcCC---CcEEEeCCCCCCeeEcccCCc-
Confidence 345555433334444456789998621 2221111 1233 34556655422 346665556678988643222
Q ss_pred ccceeEEee-CCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCcceeEEEECCEEEEEeccCCCCCCCceEEE
Q 012755 240 RCLFGSSSL-GEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEE 318 (457)
Q Consensus 240 r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~ 318 (457)
-....+... +++++++ +..+ +-....|+-...|+........|-......-++.++++. ..+ .+..
T Consensus 145 gs~~~~~r~~dG~~vav-s~~G-----~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg------~~~~ 211 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAV-SSRG-----NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGG------QIQF 211 (302)
T ss_dssp --EEEEEE-TTS-EEEE-ETTS-----SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTT------EEEE
T ss_pred ceeEeEEECCCCcEEEE-ECcc-----cEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCc------EEEE
Confidence 122222333 4554444 3222 123346777788988754433333333334467888864 111 1222
Q ss_pred EE--CCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEE--CCEEEEEecCCCeEEEEECCCCcEEEeccCCCccCCCCcc
Q 012755 319 YN--LETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVV--NNQLYSADQATNVVKKYNKTNNSWTVVKRLPVRANSFNGW 394 (457)
Q Consensus 319 yd--~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~g~ly~~gg~~~~v~~Yd~~~~~W~~v~~~p~~~~~~~~~ 394 (457)
=| -...+|++-..... ....+..-++. ++.+++.||. +.+++=.-..++|++.......+... .
T Consensus 212 s~~~~~~~~w~~~~~~~~---------~~~~~~ld~a~~~~~~~wa~gg~-G~l~~S~DgGktW~~~~~~~~~~~n~--~ 279 (302)
T PF14870_consen 212 SDDPDDGETWSEPIIPIK---------TNGYGILDLAYRPPNEIWAVGGS-GTLLVSTDGGKTWQKDRVGENVPSNL--Y 279 (302)
T ss_dssp EE-TTEEEEE---B-TTS---------S--S-EEEEEESSSS-EEEEEST-T-EEEESSTTSS-EE-GGGTTSSS-----
T ss_pred ccCCCCccccccccCCcc---------cCceeeEEEEecCCCCEEEEeCC-ccEEEeCCCCccceECccccCCCCce--E
Confidence 22 23456776221111 01122122223 5789998864 46666666678999986433222211 1
Q ss_pred eEEEEEeCCEEEEEcCc
Q 012755 395 GLAFKACGNSLLVIGGH 411 (457)
Q Consensus 395 ~~~~~~~~g~lyv~GG~ 411 (457)
.+ ...-+++-+++|..
T Consensus 280 ~i-~f~~~~~gf~lG~~ 295 (302)
T PF14870_consen 280 RI-VFVNPDKGFVLGQD 295 (302)
T ss_dssp EE-EEEETTEEEEE-ST
T ss_pred EE-EEcCCCceEEECCC
Confidence 12 23456799999854
No 185
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=43.87 E-value=4.5e+02 Score=28.46 Aligned_cols=108 Identities=13% Similarity=0.122 Sum_probs=57.5
Q ss_pred eeCCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCcceeEEEECCEEEEEeccCCCCCCCceEEEEECCCCce
Q 012755 247 SLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTW 326 (457)
Q Consensus 247 ~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W 326 (457)
+.-+.-|++.|..+ ..+-..|..++.=.++=.- ..+.-.++++.-...|+..|.. ...+..||+.+..=
T Consensus 543 FHPNs~Y~aTGSsD-----~tVRlWDv~~G~~VRiF~G-H~~~V~al~~Sp~Gr~LaSg~e-----d~~I~iWDl~~~~~ 611 (707)
T KOG0263|consen 543 FHPNSNYVATGSSD-----RTVRLWDVSTGNSVRIFTG-HKGPVTALAFSPCGRYLASGDE-----DGLIKIWDLANGSL 611 (707)
T ss_pred ECCcccccccCCCC-----ceEEEEEcCCCcEEEEecC-CCCceEEEEEcCCCceEeeccc-----CCcEEEEEcCCCcc
Confidence 34567788888432 4566667766665444211 1111223333333344443322 34578899887542
Q ss_pred EEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEECCC
Q 012755 327 KRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQATNVVKKYNKTN 375 (457)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~~~~v~~Yd~~~ 375 (457)
+..+.. + ......-....+|.+++.||.-++|..||...
T Consensus 612 --v~~l~~-------H-t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 612 --VKQLKG-------H-TGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred --hhhhhc-------c-cCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 222211 0 01111112345999999999999999998754
No 186
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=43.51 E-value=5.3e+02 Score=29.14 Aligned_cols=141 Identities=14% Similarity=0.095 Sum_probs=77.6
Q ss_pred CEEEEEee-ec---CCCCccceEEEEeCCC-CcEEECCCCCCCCcceeEEEECCEEEEEeccCCCCCCCceEEEEECCCC
Q 012755 250 EVAIVAGG-TD---KNGCILKSAELYNSEL-GTWETLPDMNLPRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETR 324 (457)
Q Consensus 250 ~~iyv~GG-~~---~~~~~~~~v~~yd~~t-~~W~~~~~~p~~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~ 324 (457)
+..|++|- .. .+......+.+|.... ++=+.+..+-..-.-.+.+.++|++.+- .-..+..|+..++
T Consensus 787 ~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA~--------In~~vrLye~t~~ 858 (1096)
T KOG1897|consen 787 NTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLAG--------INQSVRLYEWTTE 858 (1096)
T ss_pred ceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEEe--------cCcEEEEEEcccc
Confidence 56777763 21 1112344566665544 6666665554443344556778887653 3346777877666
Q ss_pred ceEEcC-CCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecC-CCeEEEEECCCCcEEEeccCCCccCCCCcceEEEEEeC
Q 012755 325 TWKRIE-NMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQA-TNVVKKYNKTNNSWTVVKRLPVRANSFNGWGLAFKACG 402 (457)
Q Consensus 325 ~W~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~-~~~v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~ 402 (457)
+=-++. .... +.....+-+.++.|++..-. .-.+..|+...+...+++.-- ...|-.++..++
T Consensus 859 ~eLr~e~~~~~----------~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~-----~p~Wmtaveil~ 923 (1096)
T KOG1897|consen 859 RELRIECNISN----------PIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDY-----NPNWMTAVEILD 923 (1096)
T ss_pred ceehhhhcccC----------CeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhh-----CccceeeEEEec
Confidence 211111 1111 11111223457777776533 235778999998899887432 223445566678
Q ss_pred CEEEEEcCcCC
Q 012755 403 NSLLVIGGHRE 413 (457)
Q Consensus 403 g~lyv~GG~~~ 413 (457)
+..|+.+-..+
T Consensus 924 ~d~ylgae~~g 934 (1096)
T KOG1897|consen 924 DDTYLGAENSG 934 (1096)
T ss_pred CceEEeecccc
Confidence 88888665544
No 187
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=43.02 E-value=3.7e+02 Score=27.15 Aligned_cols=218 Identities=9% Similarity=0.047 Sum_probs=97.4
Q ss_pred EEEEEecCccEEEEeCCCCcEEeCCCCCC---CccccCCCeeeEEeCCEEEEEceecCCcEEEEEECCCCcEEeCCCC--
Q 012755 162 WVYLACILMPWEAFDPLRQRWMRLPRMQC---DECFTSADKESLAVGTQLLVFGRELSGFAIWMYSLIANCWSKCPQM-- 236 (457)
Q Consensus 162 ~l~~~~~~~~~~~ydp~~~~W~~l~~~p~---~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~l~~l-- 236 (457)
.-++++....+..=+-.-++|.... .|. .....+. ..+...++..|++|-.. .++.=.-.-++|++++..
T Consensus 102 ~GwAVG~~G~IL~T~DGG~tW~~~~-~~~~~~~~~~~~l-~~v~f~~~~g~~vG~~G---~il~T~DgG~tW~~~~~~~~ 176 (398)
T PLN00033 102 HGFLLGTRQTLLETKDGGKTWVPRS-IPSAEDEDFNYRF-NSISFKGKEGWIIGKPA---ILLHTSDGGETWERIPLSPK 176 (398)
T ss_pred EEEEEcCCCEEEEEcCCCCCceECc-cCcccccccccce-eeeEEECCEEEEEcCce---EEEEEcCCCCCceECccccC
Confidence 4444444333333334456898753 221 1111111 12344577888886321 233333345789987532
Q ss_pred -CCCccceeEEee-CCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCC----CCc--------------ceeEE-E
Q 012755 237 -NLPRCLFGSSSL-GEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNL----PRK--------------LCSGF-F 295 (457)
Q Consensus 237 -p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~----~r~--------------~~~~~-~ 295 (457)
|.+ ....... ++.++++|.. ..+++-+-.-.+|+.+...+. .+. ...+. .
T Consensus 177 ~p~~--~~~i~~~~~~~~~ivg~~-------G~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~ 247 (398)
T PLN00033 177 LPGE--PVLIKATGPKSAEMVTDE-------GAIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRS 247 (398)
T ss_pred CCCC--ceEEEEECCCceEEEecc-------ceEEEECCCCCCceEcccccccccccccccccccccceeccceeeEEEc
Confidence 222 2223334 3457777631 234444445568998722211 110 01111 1
Q ss_pred ECCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEECCC
Q 012755 296 MDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQATNVVKKYNKTN 375 (457)
Q Consensus 296 ~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~~~~v~~Yd~~~ 375 (457)
-++.++++|-.. +.+...|.-...|+.+..... .+........++.+++++. .+.+..-+...
T Consensus 248 ~dG~~~~vg~~G------~~~~s~d~G~~~W~~~~~~~~----------~~l~~v~~~~dg~l~l~g~-~G~l~~S~d~G 310 (398)
T PLN00033 248 PDGDYVAVSSRG------NFYLTWEPGQPYWQPHNRASA----------RRIQNMGWRADGGLWLLTR-GGGLYVSKGTG 310 (398)
T ss_pred CCCCEEEEECCc------cEEEecCCCCcceEEecCCCc----------cceeeeeEcCCCCEEEEeC-CceEEEecCCC
Confidence 234444443211 112224444445998865333 2211112234788888874 45566655555
Q ss_pred CcEE--EeccCCCccCCCCcceEEEEEeCCEEEEEcCc
Q 012755 376 NSWT--VVKRLPVRANSFNGWGLAFKACGNSLLVIGGH 411 (457)
Q Consensus 376 ~~W~--~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~ 411 (457)
..|+ .....+...... ........-++.++++|..
T Consensus 311 ~~~~~~~f~~~~~~~~~~-~l~~v~~~~d~~~~a~G~~ 347 (398)
T PLN00033 311 LTEEDFDFEEADIKSRGF-GILDVGYRSKKEAWAAGGS 347 (398)
T ss_pred CcccccceeecccCCCCc-ceEEEEEcCCCcEEEEECC
Confidence 5553 222222211100 1111122346788888864
No 188
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=42.20 E-value=4e+02 Score=27.38 Aligned_cols=157 Identities=11% Similarity=0.034 Sum_probs=82.7
Q ss_pred ccccccEEEEEecCccEEEEeCCCCcEEeCCC-CCCCccccC---------CCeeeEEeCCEEEEEceecCCcEEEEEEC
Q 012755 156 LGMVEHWVYLACILMPWEAFDPLRQRWMRLPR-MQCDECFTS---------ADKESLAVGTQLLVFGRELSGFAIWMYSL 225 (457)
Q Consensus 156 ~~~~~~~l~~~~~~~~~~~ydp~~~~W~~l~~-~p~~~~~~~---------~~~~~~~~~~~lyv~GG~~~~~~v~~yd~ 225 (457)
+..+++.-.++....+++.|||.+++-.++.- +|..|.... +.-..++.|+.|-.+.. ..+++.++
T Consensus 273 ~~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR----GkaFi~~~ 348 (668)
T COG4946 273 NANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR----GKAFIMRP 348 (668)
T ss_pred ccCCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec----CcEEEECC
Confidence 33344545555556689999999998877652 333321111 01011222333322221 24566666
Q ss_pred CCCcEEeCCCCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCcceeEEEECCEEEEEec
Q 012755 226 IANCWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFMDGKFYIIGG 305 (457)
Q Consensus 226 ~t~~W~~l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~iyv~GG 305 (457)
..+---+++.-..-|+. -...+++-.|+|-.++ ..+.+||..+..-+.+.. +..+-....+.-+||..+++-
T Consensus 349 ~~~~~iqv~~~~~VrY~--r~~~~~e~~vigt~dg-----D~l~iyd~~~~e~kr~e~-~lg~I~av~vs~dGK~~vvaN 420 (668)
T COG4946 349 WDGYSIQVGKKGGVRYR--RIQVDPEGDVIGTNDG-----DKLGIYDKDGGEVKRIEK-DLGNIEAVKVSPDGKKVVVAN 420 (668)
T ss_pred CCCeeEEcCCCCceEEE--EEccCCcceEEeccCC-----ceEEEEecCCceEEEeeC-CccceEEEEEcCCCcEEEEEc
Confidence 55444444432222322 2233444566665544 368899999988766632 222333333444667555532
Q ss_pred cCCCCCCCceEEEEECCCCceEEcC
Q 012755 306 MSSPTDPLTCGEEYNLETRTWKRIE 330 (457)
Q Consensus 306 ~~~~~~~~~~~~~yd~~t~~W~~~~ 330 (457)
....++++|..++.=+.+.
T Consensus 421 ------dr~el~vididngnv~~id 439 (668)
T COG4946 421 ------DRFELWVIDIDNGNVRLID 439 (668)
T ss_pred ------CceEEEEEEecCCCeeEec
Confidence 2346788888888766554
No 189
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.70 E-value=5.5e+02 Score=28.78 Aligned_cols=135 Identities=16% Similarity=0.157 Sum_probs=69.6
Q ss_pred EEEEEceecCCcEEEEEECCCCcEEeCCCCCCCccceeEEeeC--CEEEEEeeecCCCCccceEEEEeCCCCcEEECCCC
Q 012755 207 QLLVFGRELSGFAIWMYSLIANCWSKCPQMNLPRCLFGSSSLG--EVAIVAGGTDKNGCILKSAELYNSELGTWETLPDM 284 (457)
Q Consensus 207 ~lyv~GG~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 284 (457)
.++|.|+++..-.+|+++ .|+.|..=. +-.--.+-+++.+. ..+++..|.+ .++-++|..+.+=-+.-.-
T Consensus 219 pliVSG~DDRqVKlWrmn-etKaWEvDt-crgH~nnVssvlfhp~q~lIlSnsED------ksirVwDm~kRt~v~tfrr 290 (1202)
T KOG0292|consen 219 PLIVSGADDRQVKLWRMN-ETKAWEVDT-CRGHYNNVSSVLFHPHQDLILSNSED------KSIRVWDMTKRTSVQTFRR 290 (1202)
T ss_pred ceEEecCCcceeeEEEec-cccceeehh-hhcccCCcceEEecCccceeEecCCC------ccEEEEecccccceeeeec
Confidence 456667765555667665 577886421 11000111223332 2455544422 4566677665542221111
Q ss_pred CCCCcceeEEEECCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecC
Q 012755 285 NLPRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQA 364 (457)
Q Consensus 285 p~~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~ 364 (457)
-..|...-++.-...+|..|.. +.+.+|-. .|-.++.++.+|.||.+-
T Consensus 291 endRFW~laahP~lNLfAAgHD-------sGm~VFkl-----------------------eRErpa~~v~~n~LfYvk-- 338 (1202)
T KOG0292|consen 291 ENDRFWILAAHPELNLFAAGHD-------SGMIVFKL-----------------------ERERPAYAVNGNGLFYVK-- 338 (1202)
T ss_pred cCCeEEEEEecCCcceeeeecC-------CceEEEEE-----------------------cccCceEEEcCCEEEEEc--
Confidence 2234444444445667776532 23455533 233445777888888885
Q ss_pred CCeEEEEECCCCcEEEe
Q 012755 365 TNVVKKYNKTNNSWTVV 381 (457)
Q Consensus 365 ~~~v~~Yd~~~~~W~~v 381 (457)
...+..||..+..=..+
T Consensus 339 d~~i~~~d~~t~~d~~v 355 (1202)
T KOG0292|consen 339 DRFIRSYDLRTQKDTAV 355 (1202)
T ss_pred cceEEeeecccccccee
Confidence 46788899887543333
No 190
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=41.55 E-value=2.8e+02 Score=25.40 Aligned_cols=76 Identities=13% Similarity=0.086 Sum_probs=40.8
Q ss_pred CCCCCEEEE--ECCEEEEEecCCCeEEEEECCCCcEEEeccC--CCccCCCCcceEEEEEe--CCEEEEEcCcCCCCCce
Q 012755 345 MSSPPLVAV--VNNQLYSADQATNVVKKYNKTNNSWTVVKRL--PVRANSFNGWGLAFKAC--GNSLLVIGGHRELQGEI 418 (457)
Q Consensus 345 ~r~~~~~~~--~~g~ly~~gg~~~~v~~Yd~~~~~W~~v~~~--p~~~~~~~~~~~~~~~~--~g~lyv~GG~~~~~~~~ 418 (457)
...+|.++. -+|-+++-|.....+..||..-+.-..+-.- ....... ..++.+++ .|+|++.|-.+.
T Consensus 181 ghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gles--savaav~vdpsgrll~sg~~ds----- 253 (350)
T KOG0641|consen 181 GHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLES--SAVAAVAVDPSGRLLASGHADS----- 253 (350)
T ss_pred CCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCccc--ceeEEEEECCCcceeeeccCCC-----
Confidence 344555543 4888888887777888888876654433211 1111001 12333333 578888774432
Q ss_pred EEEEEeeCCC
Q 012755 419 IVLHSWDPTD 428 (457)
Q Consensus 419 ~~v~~y~~~~ 428 (457)
+...||...
T Consensus 254 -sc~lydirg 262 (350)
T KOG0641|consen 254 -SCMLYDIRG 262 (350)
T ss_pred -ceEEEEeeC
Confidence 355566554
No 191
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=40.58 E-value=4.7e+02 Score=27.64 Aligned_cols=146 Identities=15% Similarity=0.225 Sum_probs=76.7
Q ss_pred eeCCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCcceeEEEECC-EEEEEeccCCCCCCCceEEEEECCCCc
Q 012755 247 SLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFMDG-KFYIIGGMSSPTDPLTCGEEYNLETRT 325 (457)
Q Consensus 247 ~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g-~iyv~GG~~~~~~~~~~~~~yd~~t~~ 325 (457)
.+++.+.|.|.++ ..+-++|+.+.+.-.. +...-.......+++ ..++-|+.+ ..+.++|+.+..
T Consensus 338 ~~~~~~lvsgs~d------~~v~VW~~~~~~cl~s--l~gH~~~V~sl~~~~~~~~~Sgs~D------~~IkvWdl~~~~ 403 (537)
T KOG0274|consen 338 QLDEPLLVSGSYD------GTVKVWDPRTGKCLKS--LSGHTGRVYSLIVDSENRLLSGSLD------TTIKVWDLRTKR 403 (537)
T ss_pred EecCCEEEEEecC------ceEEEEEhhhceeeee--ecCCcceEEEEEecCcceEEeeeec------cceEeecCCchh
Confidence 3456666666543 3678888886654322 111111111224455 455545433 457888888764
Q ss_pred eEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEECCCCcEEEeccCCCccCCCCcceEEEEEeCCEE
Q 012755 326 WKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQATNVVKKYNKTNNSWTVVKRLPVRANSFNGWGLAFKACGNSL 405 (457)
Q Consensus 326 W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~~~~v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~g~l 405 (457)
..+..... .........+.+++++-+...+.|..||.++++=.++-.-+ . ..+..+...+...
T Consensus 404 -~c~~tl~~----------h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~--~----~~~v~~l~~~~~~ 466 (537)
T KOG0274|consen 404 -KCIHTLQG----------HTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGR--H----VGGVSALALGKEE 466 (537)
T ss_pred -hhhhhhcC----------CcccccccccccceeEeccccccEEEeecccCceeeeeccC--C----cccEEEeecCcce
Confidence 22222211 11111122345677777777788999999988766654333 1 1123333334456
Q ss_pred EEEcCcCCCCCceEEEEEeeCCCC
Q 012755 406 LVIGGHRELQGEIIVLHSWDPTDG 429 (457)
Q Consensus 406 yv~GG~~~~~~~~~~v~~y~~~~~ 429 (457)
++..+.++ .+.+||....
T Consensus 467 il~s~~~~------~~~l~dl~~~ 484 (537)
T KOG0274|consen 467 ILCSSDDG------SVKLWDLRSG 484 (537)
T ss_pred EEEEecCC------eeEEEecccC
Confidence 66666653 4666777653
No 192
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.55 E-value=3.8e+02 Score=26.66 Aligned_cols=147 Identities=9% Similarity=0.063 Sum_probs=72.9
Q ss_pred CEEEEEceecCCcEEEEEECC--CCcEEeCCC------CCCCccceeEEeeCC---EEEEEeeecCCCCccceEEEEeCC
Q 012755 206 TQLLVFGRELSGFAIWMYSLI--ANCWSKCPQ------MNLPRCLFGSSSLGE---VAIVAGGTDKNGCILKSAELYNSE 274 (457)
Q Consensus 206 ~~lyv~GG~~~~~~v~~yd~~--t~~W~~l~~------lp~~r~~~~~~~~~~---~iyv~GG~~~~~~~~~~v~~yd~~ 274 (457)
-.|+.+||...-+.+.+||.. .+.|+.-.. |-.|.....+.++.+ .-++.+ .....+-.||++
T Consensus 161 p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~------T~~hqvR~YDt~ 234 (412)
T KOG3881|consen 161 PYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATI------TRYHQVRLYDTR 234 (412)
T ss_pred CceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEE------ecceeEEEecCc
Confidence 356777887655667777765 455765321 223444444444433 222221 234567889998
Q ss_pred CCcE--EECCCCCCCCcceeEEEECCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCC-CEE
Q 012755 275 LGTW--ETLPDMNLPRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSP-PLV 351 (457)
Q Consensus 275 t~~W--~~~~~~p~~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~-~~~ 351 (457)
+++= ....-+-.+.+..+...-++.||+ |- ....+..||..++.=--.. ... .... .++
T Consensus 235 ~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~-gn------~~g~l~~FD~r~~kl~g~~-~kg----------~tGsirsi 296 (412)
T KOG3881|consen 235 HQRRPVAQFDFLENPISSTGLTPSGNFIYT-GN------TKGQLAKFDLRGGKLLGCG-LKG----------ITGSIRSI 296 (412)
T ss_pred ccCcceeEeccccCcceeeeecCCCcEEEE-ec------ccchhheecccCceeeccc-cCC----------ccCCcceE
Confidence 6651 112222222222222222344554 32 3445667888776532110 000 0111 123
Q ss_pred EEECC-EEEEEecCCCeEEEEECCCC
Q 012755 352 AVVNN-QLYSADQATNVVKKYNKTNN 376 (457)
Q Consensus 352 ~~~~g-~ly~~gg~~~~v~~Yd~~~~ 376 (457)
....+ .+...+|--..|.+||.+++
T Consensus 297 h~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 297 HCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred EEcCCCceEEeeccceeEEEeecccc
Confidence 33333 56666777778999999883
No 193
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=39.46 E-value=3.1e+02 Score=26.57 Aligned_cols=46 Identities=7% Similarity=0.003 Sum_probs=30.7
Q ss_pred CCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEECCCC
Q 012755 323 TRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQATNVVKKYNKTNN 376 (457)
Q Consensus 323 t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~~~~v~~Yd~~~~ 376 (457)
..+|+-.+.... ++......++++++.-.+-|+.-..+.+||...+
T Consensus 28 s~~~~l~~lF~~--------~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~ 73 (362)
T KOG0294|consen 28 SVKPTLKPLFAF--------SAHAGSITALAVSGPYVASGSSDETIHIYDMRKR 73 (362)
T ss_pred ccceeeeccccc--------cccccceeEEEecceeEeccCCCCcEEEEeccch
Confidence 346766654433 2244455667788886666777788999999775
No 194
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=38.47 E-value=3.5e+02 Score=25.60 Aligned_cols=92 Identities=12% Similarity=0.125 Sum_probs=54.0
Q ss_pred ceEEEEeCCCCc--EEECCCCCCCCcceeEEEECCEEEEEeccCCCCCCCceEEEEECCCC--ceEEcCCCCCCCCCCCC
Q 012755 266 KSAELYNSELGT--WETLPDMNLPRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETR--TWKRIENMYPSNVGTQS 341 (457)
Q Consensus 266 ~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~~~~~~~~~~ 341 (457)
..+..-|+.++. |+.+-. .|...++.++++. .|+|-+++ .++..+.+|+ -|.-..--
T Consensus 33 ~~~~avd~~sG~~~We~ilg---~RiE~sa~vvgdf-VV~GCy~g------~lYfl~~~tGs~~w~f~~~~--------- 93 (354)
T KOG4649|consen 33 GIVIAVDPQSGNLIWEAILG---VRIECSAIVVGDF-VVLGCYSG------GLYFLCVKTGSQIWNFVILE--------- 93 (354)
T ss_pred ceEEEecCCCCcEEeehhhC---ceeeeeeEEECCE-EEEEEccC------cEEEEEecchhheeeeeehh---------
Confidence 456778988886 987633 4666677777776 45665443 3455555555 46543211
Q ss_pred CCCCCCCCEEEEECCEEEEEecCCCeEEEEECCCC--cEE
Q 012755 342 NPAMSSPPLVAVVNNQLYSADQATNVVKKYNKTNN--SWT 379 (457)
Q Consensus 342 ~~~~r~~~~~~~~~g~ly~~gg~~~~v~~Yd~~~~--~W~ 379 (457)
.-.....+..++.+...|......+..|+.+. .|+
T Consensus 94 ---~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 94 ---TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred ---hhccceEEcCCCceEEEecCCCcEEEecccccceEEe
Confidence 11112234445555556666677888888776 365
No 195
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=35.22 E-value=3.7e+02 Score=24.90 Aligned_cols=191 Identities=14% Similarity=0.116 Sum_probs=88.0
Q ss_pred eCCEEEEEc--eecC----CcEE-EEEECC-CCcEEeCCCCCCC--------ccceeEEeeCCEEEEEeeecCCCCccce
Q 012755 204 VGTQLLVFG--RELS----GFAI-WMYSLI-ANCWSKCPQMNLP--------RCLFGSSSLGEVAIVAGGTDKNGCILKS 267 (457)
Q Consensus 204 ~~~~lyv~G--G~~~----~~~v-~~yd~~-t~~W~~l~~lp~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 267 (457)
.++.|+++- +... ...+ +..... -.+|.....++.. -....+..-++.+++.. +.........
T Consensus 57 ~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~~-~~~~~~~~~~ 135 (275)
T PF13088_consen 57 PDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAPY-YHESGGSFSA 135 (275)
T ss_dssp TTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEEE-EEESSCEEEE
T ss_pred CCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceeccceeeeeEecCCCEEEEE-eeccccCcce
Confidence 488888775 2111 1122 233333 4589875433211 11112333477888772 2211112333
Q ss_pred EEEEeCC-CCcEEECCCCCCC-Cc-ceeEEE-ECCEEEEEeccCCCCCCCceEEEEECC-CCceEEcCCCCCCCCCCCCC
Q 012755 268 AELYNSE-LGTWETLPDMNLP-RK-LCSGFF-MDGKFYIIGGMSSPTDPLTCGEEYNLE-TRTWKRIENMYPSNVGTQSN 342 (457)
Q Consensus 268 v~~yd~~-t~~W~~~~~~p~~-r~-~~~~~~-~~g~iyv~GG~~~~~~~~~~~~~yd~~-t~~W~~~~~~~~~~~~~~~~ 342 (457)
...|... -.+|+.....+.. .. ..+.+. -+|.||++.... ... .....+... -.+|+.......
T Consensus 136 ~~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~-~~~--~~~~~~S~D~G~TWs~~~~~~~-------- 204 (275)
T PF13088_consen 136 FVYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTE-GND--DIYISRSTDGGRTWSPPQPTNL-------- 204 (275)
T ss_dssp EEEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEEC-SST--EEEEEEESSTTSS-EEEEEEEC--------
T ss_pred EEEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEcc-CCC--cEEEEEECCCCCcCCCceeccc--------
Confidence 4445544 4569887655322 22 223332 378999886443 111 333444444 347998652221
Q ss_pred CCCCCCCEEEEE-CCEEEEEecC---CCe--EEEEECCCCcEEEeccCCCccCCCCcceEEEEEe-CCEEEE
Q 012755 343 PAMSSPPLVAVV-NNQLYSADQA---TNV--VKKYNKTNNSWTVVKRLPVRANSFNGWGLAFKAC-GNSLLV 407 (457)
Q Consensus 343 ~~~r~~~~~~~~-~g~ly~~gg~---~~~--v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~-~g~lyv 407 (457)
+.......++.+ +|+++++... ... +..-..+..+|.....+.........+ ..++.. +|+|||
T Consensus 205 ~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y-~~~~~~~dg~l~i 275 (275)
T PF13088_consen 205 PNPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGY-PSLTQLPDGKLYI 275 (275)
T ss_dssp SSCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEE-EEEEEEETTEEEE
T ss_pred CcccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCCCCcEEC-CeeEEeCCCcCCC
Confidence 113333333333 6788887652 122 333333467999776554333111122 234444 679986
No 196
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=35.13 E-value=1.1e+02 Score=19.04 Aligned_cols=24 Identities=13% Similarity=0.230 Sum_probs=16.5
Q ss_pred EEEECCEEEEEecCCCeEEEEECCC
Q 012755 351 VAVVNNQLYSADQATNVVKKYNKTN 375 (457)
Q Consensus 351 ~~~~~g~ly~~gg~~~~v~~Yd~~~ 375 (457)
.++.++.+|+.+ ..+.++++|+++
T Consensus 17 ~~v~~g~vyv~~-~dg~l~ald~~t 40 (40)
T PF13570_consen 17 PAVAGGRVYVGT-GDGNLYALDAAT 40 (40)
T ss_dssp -EECTSEEEEE--TTSEEEEEETT-
T ss_pred CEEECCEEEEEc-CCCEEEEEeCCC
Confidence 466688888765 468899999864
No 197
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=34.28 E-value=3.9e+02 Score=24.91 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=25.6
Q ss_pred CCEEEEEecCCCeEEEEECCCCcEEEeccCCCcc
Q 012755 355 NNQLYSADQATNVVKKYNKTNNSWTVVKRLPVRA 388 (457)
Q Consensus 355 ~g~ly~~gg~~~~v~~Yd~~~~~W~~v~~~p~~~ 388 (457)
+|.||+.--..+.|+.+||.++.--.--.+|.++
T Consensus 222 eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~q 255 (310)
T KOG4499|consen 222 EGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQ 255 (310)
T ss_pred CCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCc
Confidence 7899998777789999999998654433466554
No 198
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=33.49 E-value=3.9e+02 Score=28.90 Aligned_cols=107 Identities=20% Similarity=0.239 Sum_probs=63.7
Q ss_pred EEECCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEE-EECCEEEEEecCCCeEEEEE
Q 012755 294 FFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVA-VVNNQLYSADQATNVVKKYN 372 (457)
Q Consensus 294 ~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~g~ly~~gg~~~~v~~Yd 372 (457)
.+.-+.=|++.|.. -..+..+|..++.=.++-.-.. +.-.+++ ..+|+-.+-|+..+.|..||
T Consensus 542 ~FHPNs~Y~aTGSs-----D~tVRlWDv~~G~~VRiF~GH~-----------~~V~al~~Sp~Gr~LaSg~ed~~I~iWD 605 (707)
T KOG0263|consen 542 SFHPNSNYVATGSS-----DRTVRLWDVSTGNSVRIFTGHK-----------GPVTALAFSPCGRYLASGDEDGLIKIWD 605 (707)
T ss_pred EECCcccccccCCC-----CceEEEEEcCCCcEEEEecCCC-----------CceEEEEEcCCCceEeecccCCcEEEEE
Confidence 35567788887743 3457778888877665542211 1111222 23777666777888899999
Q ss_pred CCCCcEEEeccCCCccCCCCcceEEE-EEeCCEEEEEcCcCCCCCceEEEEEeeCCC
Q 012755 373 KTNNSWTVVKRLPVRANSFNGWGLAF-KACGNSLLVIGGHRELQGEIIVLHSWDPTD 428 (457)
Q Consensus 373 ~~~~~W~~v~~~p~~~~~~~~~~~~~-~~~~g~lyv~GG~~~~~~~~~~v~~y~~~~ 428 (457)
..+.. .+..+.... +....+ ...+|.+++.||-+. ++-.||...
T Consensus 606 l~~~~--~v~~l~~Ht----~ti~SlsFS~dg~vLasgg~Dn------sV~lWD~~~ 650 (707)
T KOG0263|consen 606 LANGS--LVKQLKGHT----GTIYSLSFSRDGNVLASGGADN------SVRLWDLTK 650 (707)
T ss_pred cCCCc--chhhhhccc----CceeEEEEecCCCEEEecCCCC------eEEEEEchh
Confidence 98754 233332221 111122 256899999998763 577777754
No 199
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=33.20 E-value=4.2e+02 Score=24.99 Aligned_cols=229 Identities=15% Similarity=0.248 Sum_probs=101.1
Q ss_pred eEEeCCEEEE--EceecCC----cEEEEEECC-CCcEEe---CCC----CCCC-ccceeEEeeCCEEEEEeee-cCCCCc
Q 012755 201 SLAVGTQLLV--FGRELSG----FAIWMYSLI-ANCWSK---CPQ----MNLP-RCLFGSSSLGEVAIVAGGT-DKNGCI 264 (457)
Q Consensus 201 ~~~~~~~lyv--~GG~~~~----~~v~~yd~~-t~~W~~---l~~----lp~~-r~~~~~~~~~~~iyv~GG~-~~~~~~ 264 (457)
.++.++-||. ++|+... .-.|+=.-. -++|+. +.+ .|.- -..+++.++++++|.+=-. .-....
T Consensus 21 aFVy~~VIYAPfM~~~RHGv~~LhvaWVkSgDdG~TWttPEwLtd~H~~yptvnyHCmSMGv~~NRLfa~iEtR~~a~~k 100 (367)
T PF12217_consen 21 AFVYDNVIYAPFMAGDRHGVDNLHVAWVKSGDDGQTWTTPEWLTDLHPDYPTVNYHCMSMGVVGNRLFAVIETRTVASNK 100 (367)
T ss_dssp -EEETTEEEEEEEEESSSSSTT-EEEEEEESSTTSS----EESS---TTTTTEEEE-B-EEEETTEEEEEEEEEETTT--
T ss_pred ceeecCeeecccccccccCccceEEEEEEecCCCCcccCchhhhhcCCCCCccceeeeeeeeecceeeEEEeehhhhhhh
Confidence 3677888873 4443221 234444443 456754 222 2221 1233556789999877432 222234
Q ss_pred cceEEEEe---CCCCcEEE--CCCCCC-------CCcceeEEEECCEEEEEeccCCCCCCCceEEEEECCC------Cce
Q 012755 265 LKSAELYN---SELGTWET--LPDMNL-------PRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLET------RTW 326 (457)
Q Consensus 265 ~~~v~~yd---~~t~~W~~--~~~~p~-------~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t------~~W 326 (457)
+...+.|| .....|+. ++..|. ...-|+.+.+++.-|.+|-..+..........|-+.. -.=
T Consensus 101 m~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs~~~~sp~~~vr 180 (367)
T PF12217_consen 101 MVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYFSDAFASPGVFVR 180 (367)
T ss_dssp EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEETTTTT-TT--EE
T ss_pred hhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEecccccCCcceee
Confidence 55666666 35677865 333333 2335777888888888875544433333334442211 011
Q ss_pred EEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEec-----C-CCeEEEEECCCCcEEEeccCCCccCCCCcceEEEEE
Q 012755 327 KRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQ-----A-TNVVKKYNKTNNSWTVVKRLPVRANSFNGWGLAFKA 400 (457)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg-----~-~~~v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~ 400 (457)
+.++.... ...+.+++-..+|.||+.-- . ...+..-+.....|+.+. .|.... ......+.
T Consensus 181 r~i~sey~---------~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slr-fp~nvH---htnlPFak 247 (367)
T PF12217_consen 181 RIIPSEYE---------RNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLR-FPNNVH---HTNLPFAK 247 (367)
T ss_dssp EE--GGG----------TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE--TT------SS---EEE
T ss_pred eechhhhc---------cccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhcc-cccccc---ccCCCcee
Confidence 12222111 01223445567999999842 1 235677777788999874 333222 22345668
Q ss_pred eCCEEEEEcCcCCCC------------CceEEEEEeeCCCCCC--CCCCeeEeccc
Q 012755 401 CGNSLLVIGGHRELQ------------GEIIVLHSWDPTDGNS--GEAQWNELAVR 442 (457)
Q Consensus 401 ~~g~lyv~GG~~~~~------------~~~~~v~~y~~~~~~w--~~~~W~~l~~~ 442 (457)
.++.||+||-....+ +..-........-+.| .+.||..|...
T Consensus 248 vgD~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdq 303 (367)
T PF12217_consen 248 VGDVLYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQ 303 (367)
T ss_dssp ETTEEEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-
T ss_pred eCCEEEEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecc
Confidence 899999998432111 0111111112222346 67799999863
No 200
>PTZ00420 coronin; Provisional
Probab=33.04 E-value=6.3e+02 Score=26.91 Aligned_cols=151 Identities=11% Similarity=0.123 Sum_probs=72.8
Q ss_pred EEEEEceecCCcEEEEEECCCCcEEeCCCCCCCccceeEE-eeCCEEEEEeeecCCCCccceEEEEeCCCCcEE-ECCCC
Q 012755 207 QLLVFGRELSGFAIWMYSLIANCWSKCPQMNLPRCLFGSS-SLGEVAIVAGGTDKNGCILKSAELYNSELGTWE-TLPDM 284 (457)
Q Consensus 207 ~lyv~GG~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~-~~~~~ 284 (457)
.+++.|+.+ ..+.+||..+.+=.. .+..+..-.+++ ..++.+++.++.+ ..+.+||+++++=. .+..-
T Consensus 139 ~iLaSgS~D--gtIrIWDl~tg~~~~--~i~~~~~V~SlswspdG~lLat~s~D------~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 139 YIMCSSGFD--SFVNIWDIENEKRAF--QINMPKKLSSLKWNIKGNLLSGTCVG------KHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred eEEEEEeCC--CeEEEEECCCCcEEE--EEecCCcEEEEEECCCCCEEEEEecC------CEEEEEECCCCcEEEEEecc
Confidence 455555543 468888988764111 111111112222 2366776666532 46889999886521 11111
Q ss_pred CCCCcceeEEE-----ECCEEEEEeccCCCCCCCceEEEEECCC-CceEEcCCCCCCCCCCCCCCCCCCCCEEEEE---C
Q 012755 285 NLPRKLCSGFF-----MDGKFYIIGGMSSPTDPLTCGEEYNLET-RTWKRIENMYPSNVGTQSNPAMSSPPLVAVV---N 355 (457)
Q Consensus 285 p~~r~~~~~~~-----~~g~iyv~GG~~~~~~~~~~~~~yd~~t-~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~ 355 (457)
...+. ...+. -++...+.+|.+.. ....+..||+.+ ..-.....+.. ..+...... +
T Consensus 209 ~g~~~-s~~v~~~~fs~d~~~IlTtG~d~~--~~R~VkLWDlr~~~~pl~~~~ld~-----------~~~~L~p~~D~~t 274 (568)
T PTZ00420 209 DGGKN-TKNIWIDGLGGDDNYILSTGFSKN--NMREMKLWDLKNTTSALVTMSIDN-----------ASAPLIPHYDEST 274 (568)
T ss_pred cCCce-eEEEEeeeEcCCCCEEEEEEcCCC--CccEEEEEECCCCCCceEEEEecC-----------CccceEEeeeCCC
Confidence 11111 11111 24455555555432 234688899875 22111111100 111111122 4
Q ss_pred CEEEEEecCCCeEEEEECCCCcEEEe
Q 012755 356 NQLYSADQATNVVKKYNKTNNSWTVV 381 (457)
Q Consensus 356 g~ly~~gg~~~~v~~Yd~~~~~W~~v 381 (457)
|.+|+.|..-+.+..|+...+.=..+
T Consensus 275 g~l~lsGkGD~tIr~~e~~~~~~~~l 300 (568)
T PTZ00420 275 GLIYLIGKGDGNCRYYQHSLGSIRKV 300 (568)
T ss_pred CCEEEEEECCCeEEEEEccCCcEEee
Confidence 78898887778899999877643333
No 201
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=32.71 E-value=5.5e+02 Score=26.16 Aligned_cols=134 Identities=13% Similarity=0.170 Sum_probs=63.9
Q ss_pred EeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCcc-eeEEEEC--CEEEEEeccCCCCCCCceEEEEECC
Q 012755 246 SSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKL-CSGFFMD--GKFYIIGGMSSPTDPLTCGEEYNLE 322 (457)
Q Consensus 246 ~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~~~~--g~iyv~GG~~~~~~~~~~~~~yd~~ 322 (457)
+.-+++.++.||.+ ..+.++|+.|..=... ++..|.. .+.+... ..+|..+ ....+-+|+.+
T Consensus 210 vS~Dgkylatgg~d------~~v~Iw~~~t~ehv~~--~~ghr~~V~~L~fr~gt~~lys~s-------~Drsvkvw~~~ 274 (479)
T KOG0299|consen 210 VSSDGKYLATGGRD------RHVQIWDCDTLEHVKV--FKGHRGAVSSLAFRKGTSELYSAS-------ADRSVKVWSID 274 (479)
T ss_pred EcCCCcEEEecCCC------ceEEEecCcccchhhc--ccccccceeeeeeecCccceeeee-------cCCceEEEehh
Confidence 34588999999865 3567777766553222 2222221 1223332 3466643 12334455544
Q ss_pred CCceEEcCCCCCCCCCCCCCCCCCCC-CEE-EEECCEEEEEecCCCeEEEEECCCCcEEEeccCCCccCCCCcceEEEEE
Q 012755 323 TRTWKRIENMYPSNVGTQSNPAMSSP-PLV-AVVNNQLYSADQATNVVKKYNKTNNSWTVVKRLPVRANSFNGWGLAFKA 400 (457)
Q Consensus 323 t~~W~~~~~~~~~~~~~~~~~~~r~~-~~~-~~~~g~ly~~gg~~~~v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~ 400 (457)
...- +..+.. .... .++ +.--++...+||.-.++..|+....+ +.+-.-+. +.--+++.
T Consensus 275 ~~s~--vetlyG----------Hqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees-qlifrg~~------~sidcv~~ 335 (479)
T KOG0299|consen 275 QLSY--VETLYG----------HQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES-QLIFRGGE------GSIDCVAF 335 (479)
T ss_pred HhHH--HHHHhC----------CccceeeechhcccceEEeccccceeEEEeccccc-eeeeeCCC------CCeeeEEE
Confidence 3322 222221 1100 011 11246777888877777777763322 11111110 11123456
Q ss_pred eCCEEEEEcCcCC
Q 012755 401 CGNSLLVIGGHRE 413 (457)
Q Consensus 401 ~~g~lyv~GG~~~ 413 (457)
+++.=||.|+.++
T Consensus 336 In~~HfvsGSdnG 348 (479)
T KOG0299|consen 336 INDEHFVSGSDNG 348 (479)
T ss_pred ecccceeeccCCc
Confidence 6777888887664
No 202
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=32.65 E-value=3.2e+02 Score=25.34 Aligned_cols=122 Identities=16% Similarity=0.126 Sum_probs=60.8
Q ss_pred CCCCcEEeCCCCCCC-ccccCCCeeeE-EeCCEEEEEceecCCcEEEE-EECC-CCcEEeCC--CCCCCccceeEEee-C
Q 012755 177 PLRQRWMRLPRMQCD-ECFTSADKESL-AVGTQLLVFGRELSGFAIWM-YSLI-ANCWSKCP--QMNLPRCLFGSSSL-G 249 (457)
Q Consensus 177 p~~~~W~~l~~~p~~-~~~~~~~~~~~-~~~~~lyv~GG~~~~~~v~~-yd~~-t~~W~~l~--~lp~~r~~~~~~~~-~ 249 (457)
..-.+|......+.. ..... ..+ ..++.|+++-.......++. +... -.+|.... .+|.+.....+... +
T Consensus 142 D~G~tW~~~~~~~~~~~~~e~---~~~~~~dG~l~~~~R~~~~~~~~~~~S~D~G~TWs~~~~~~~~~~~~~~~~~~~~~ 218 (275)
T PF13088_consen 142 DGGKTWSSGSPIPDGQGECEP---SIVELPDGRLLAVFRTEGNDDIYISRSTDGGRTWSPPQPTNLPNPNSSISLVRLSD 218 (275)
T ss_dssp STTSSEEEEEECECSEEEEEE---EEEEETTSEEEEEEEECSSTEEEEEEESSTTSS-EEEEEEECSSCCEEEEEEECTT
T ss_pred CCCceeeccccccccCCccee---EEEECCCCcEEEEEEccCCCcEEEEEECCCCCcCCCceecccCcccCCceEEEcCC
Confidence 334579776654311 11111 122 24678888876642223333 3333 44798753 34555544444443 6
Q ss_pred CEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCC----CcceeEEEE-CCEEEE
Q 012755 250 EVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLP----RKLCSGFFM-DGKFYI 302 (457)
Q Consensus 250 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~----r~~~~~~~~-~g~iyv 302 (457)
+.++++.... .+.....+.+-.-...+|..+..+... -.+..++.. +|+|||
T Consensus 219 g~~~~~~~~~-~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 219 GRLLLVYNNP-DGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp SEEEEEEECS-STSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred CCEEEEEECC-CCCCceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 6888887732 223233343333346789876433221 234555555 579986
No 203
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=30.20 E-value=1.2e+02 Score=23.30 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=15.1
Q ss_pred CCeEEEEECCCCcEEEec
Q 012755 365 TNVVKKYNKTNNSWTVVK 382 (457)
Q Consensus 365 ~~~v~~Yd~~~~~W~~v~ 382 (457)
.+.++.|||.+++.+.+.
T Consensus 36 ~GRll~ydp~t~~~~vl~ 53 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLL 53 (89)
T ss_dssp -EEEEEEETTTTEEEEEE
T ss_pred CcCEEEEECCCCeEEEeh
Confidence 567999999999998774
No 204
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.20 E-value=4.8e+02 Score=24.72 Aligned_cols=56 Identities=11% Similarity=0.035 Sum_probs=40.0
Q ss_pred CceEEEEECCCC--ceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEECCCC--cEEEec
Q 012755 313 LTCGEEYNLETR--TWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQATNVVKKYNKTNN--SWTVVK 382 (457)
Q Consensus 313 ~~~~~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~~~~v~~Yd~~~~--~W~~v~ 382 (457)
...+.+-|+.++ .|+.+-. .|...+++++++. .++|...+.++..+.+++ -|.-+.
T Consensus 32 s~~~~avd~~sG~~~We~ilg-------------~RiE~sa~vvgdf-VV~GCy~g~lYfl~~~tGs~~w~f~~ 91 (354)
T KOG4649|consen 32 SGIVIAVDPQSGNLIWEAILG-------------VRIECSAIVVGDF-VVLGCYSGGLYFLCVKTGSQIWNFVI 91 (354)
T ss_pred CceEEEecCCCCcEEeehhhC-------------ceeeeeeEEECCE-EEEEEccCcEEEEEecchhheeeeee
Confidence 456777888887 4886633 4555567778887 677878888888888876 587654
No 205
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=29.98 E-value=5.2e+02 Score=25.02 Aligned_cols=116 Identities=16% Similarity=0.132 Sum_probs=0.0
Q ss_pred CCCCccceeEEee--CCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCc--ceeEEEECCEEEEEeccCCCCC
Q 012755 236 MNLPRCLFGSSSL--GEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRK--LCSGFFMDGKFYIIGGMSSPTD 311 (457)
Q Consensus 236 lp~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~--~~~~~~~~g~iyv~GG~~~~~~ 311 (457)
.|.|-..|+++.. ...+.+|+=.-+. ...+||+.+++=...-..+..|. +|++..-+|+....--.+-..
T Consensus 1 ~~lP~RgH~~a~~p~~~~avafaRRPG~-----~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~- 74 (305)
T PF07433_consen 1 IPLPARGHGVAAHPTRPEAVAFARRPGT-----FALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYET- 74 (305)
T ss_pred CCCCccccceeeCCCCCeEEEEEeCCCc-----EEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCC-
Q ss_pred CCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEE
Q 012755 312 PLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQL 358 (457)
Q Consensus 312 ~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~l 358 (457)
....+-+||.. +...++...+..-.|..+......+..+++-||-|
T Consensus 75 g~G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI 120 (305)
T PF07433_consen 75 GRGVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGI 120 (305)
T ss_pred CcEEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCC
No 206
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=29.90 E-value=3.7e+02 Score=23.83 Aligned_cols=62 Identities=16% Similarity=0.180 Sum_probs=35.8
Q ss_pred CEEEEE-ecCCCeEEEEECCCCcEEEeccCCCccCCCCcceEEEEEeCCEEEEEcCcCCCCCceEEEEEeeCCC
Q 012755 356 NQLYSA-DQATNVVKKYNKTNNSWTVVKRLPVRANSFNGWGLAFKACGNSLLVIGGHRELQGEIIVLHSWDPTD 428 (457)
Q Consensus 356 g~ly~~-gg~~~~v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~~~~~~v~~y~~~~ 428 (457)
.++.++ |.....+..||.+ .+.+..++.... ....-.-+|+++++||..... ..+.+||.++
T Consensus 72 ~~favi~g~~~~~v~lyd~~---~~~i~~~~~~~~-----n~i~wsP~G~~l~~~g~~n~~---G~l~~wd~~~ 134 (194)
T PF08662_consen 72 NEFAVIYGSMPAKVTLYDVK---GKKIFSFGTQPR-----NTISWSPDGRFLVLAGFGNLN---GDLEFWDVRK 134 (194)
T ss_pred CEEEEEEccCCcccEEEcCc---ccEeEeecCCCc-----eEEEECCCCCEEEEEEccCCC---cEEEEEECCC
Confidence 345444 3345689999996 344444432221 112224478888888875433 3688899875
No 207
>PF04616 Glyco_hydro_43: Glycosyl hydrolases family 43; InterPro: IPR006710 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 43 GH43 from CAZY includes enzymes with the following activities, beta-xylosidase (3.2.1.37 from EC), alpha-L-arabinofuranosidase (3.2.1.55 from EC); arabinanase (3.2.1.99 from EC), and xylanase (3.2.1.8 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3KST_B 1UV4_A 1YRZ_A 1YIF_B 3NQH_A 3QED_D 3QEE_A 3QEF_B 1YI7_A 1Y7B_B ....
Probab=29.86 E-value=4.6e+02 Score=24.39 Aligned_cols=162 Identities=13% Similarity=0.036 Sum_probs=86.2
Q ss_pred CccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCC-cEEECCCC----CCC------C-cceeEEEECCEEEEEecc
Q 012755 239 PRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELG-TWETLPDM----NLP------R-KLCSGFFMDGKFYIIGGM 306 (457)
Q Consensus 239 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~-~W~~~~~~----p~~------r-~~~~~~~~~g~iyv~GG~ 306 (457)
......++..++..|+++..... ...+.++.++.- .|+..... +.. . ....+...+|+.|++-..
T Consensus 9 ~~~DP~i~~~~~~yY~~~t~~~~---~~~i~v~~S~DL~~W~~~g~~~~~~~~~~~~~~~~~WAP~i~~~~g~yy~y~~~ 85 (286)
T PF04616_consen 9 DYADPSIVRFGDGYYLYGTTDPE---GPGIPVWSSKDLVNWTDAGNVLPPPPDWDWANNGNIWAPEIHYINGKYYMYYSD 85 (286)
T ss_dssp SECSEEEEEETTEEEEEEEEBTC---ESBEEEEEESSSSSEEEEEECESSTTTTSTTTSETTEEEEEEEETTEEEEEEEE
T ss_pred CCCCCEEEEECCEEEEEEEcCCC---CCeEEEEECCCCcccccceeeecccccccccccccccCCeEEEcCCeEEEEEEc
Confidence 33456777889999999876533 255666665543 49876311 111 1 234556779998887552
Q ss_pred CCCCCCCceEEE--EECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEEC-CEEEEEecCC------C--eEEEEECCC
Q 012755 307 SSPTDPLTCGEE--YNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVN-NQLYSADQAT------N--VVKKYNKTN 375 (457)
Q Consensus 307 ~~~~~~~~~~~~--yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-g~ly~~gg~~------~--~v~~Yd~~~ 375 (457)
.... ....+.+ =+..++.|+........ .....-+++...+ |+.|++-+.. . .+...+...
T Consensus 86 ~~~~-~~~~~~va~a~~~~Gp~~~~~~~~~~-------~~~~iD~~vf~d~dG~~Yl~~~~~~~~~~~~~i~~~~l~~d~ 157 (286)
T PF04616_consen 86 SGGD-AGSGIGVATADSPDGPWTDPGKIPIP-------GGNSIDPSVFVDDDGKYYLYYGSWDNGDPGGGIYIAELDPDG 157 (286)
T ss_dssp ESTS-TTEEEEEEEESSTTS-EEEEEEEEEE-------SSSSSSEEEEEETTSEEEEEEEESTTTSSEEEEEEEEEETTT
T ss_pred cCCC-CCcceeEEEeCCcccccccccceeec-------cccccCceEEEecCCCcEEeCcccCCCccceeEEeecccCcc
Confidence 1111 1222333 23444789987654320 0123344555666 8999985431 1 345566666
Q ss_pred CcEEEec-cC--CCc--cCCCCcceEEEEEeCCEEEEEcCc
Q 012755 376 NSWTVVK-RL--PVR--ANSFNGWGLAFKACGNSLLVIGGH 411 (457)
Q Consensus 376 ~~W~~v~-~~--p~~--~~~~~~~~~~~~~~~g~lyv~GG~ 411 (457)
..+..-. .. +.. ......-|..+...+|+.|++-..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~Egp~~~k~~g~yYl~~s~ 198 (286)
T PF04616_consen 158 TSLTGEPVVVIFPGDEGWDGGVVEGPFVFKHGGKYYLFYSA 198 (286)
T ss_dssp SSEEEEECEEEEEESGSSTTTBEEEEEEEEETTEEEEEEEE
T ss_pred ccccCcccccccccccccCCccccceEEEEcCCCEEEEEec
Confidence 6555433 11 111 111112356677889998888543
No 208
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=29.48 E-value=4.1e+02 Score=23.71 Aligned_cols=73 Identities=15% Similarity=0.105 Sum_probs=41.6
Q ss_pred CCCccceEEEEeCCCCcEEEC--CCCCCCCcceeEE-EE-CCEEE-EEeccCCCCCCCceEEEEECCCCceEEcCCCCC
Q 012755 261 NGCILKSAELYNSELGTWETL--PDMNLPRKLCSGF-FM-DGKFY-IIGGMSSPTDPLTCGEEYNLETRTWKRIENMYP 334 (457)
Q Consensus 261 ~~~~~~~v~~yd~~t~~W~~~--~~~p~~r~~~~~~-~~-~g~iy-v~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~ 334 (457)
.......++++|..++.|..+ .+-+ ....+--+ =+ +..|. ++|..-+.-..-..+++|++.++.=+.+-....
T Consensus 83 ~eEgiGkIYIkn~~~~~~~~L~i~~~~-~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~~d 160 (200)
T PF15525_consen 83 EEEGIGKIYIKNLNNNNWWSLQIDQNE-EKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEWKD 160 (200)
T ss_pred ccccceeEEEEecCCCceEEEEecCcc-cccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeeccc
Confidence 335577899999999987655 2221 11111112 22 44444 444322222233568999999999888876544
No 209
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=29.06 E-value=5.4e+02 Score=24.89 Aligned_cols=117 Identities=8% Similarity=0.112 Sum_probs=68.6
Q ss_pred eeEEeeCCEEEEEeeecC---------C-------CCccceEEEEeCCCCc----EEECCCCCCCCcceeE---EE---E
Q 012755 243 FGSSSLGEVAIVAGGTDK---------N-------GCILKSAELYNSELGT----WETLPDMNLPRKLCSG---FF---M 296 (457)
Q Consensus 243 ~~~~~~~~~iyv~GG~~~---------~-------~~~~~~v~~yd~~t~~----W~~~~~~p~~r~~~~~---~~---~ 296 (457)
-++..+++.|| |||+-- . ....+-++.||.+.++ |++--.-+ +...+- .. +
T Consensus 40 NAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~--~~WaGEVSdIlYdP~ 116 (339)
T PF09910_consen 40 NAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDK--TKWAGEVSDILYDPY 116 (339)
T ss_pred eeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCc--cccccchhheeeCCC
Confidence 34556677777 466521 1 0235678999999887 76532222 222211 12 3
Q ss_pred CCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEe---cCCCeEEEEEC
Q 012755 297 DGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSAD---QATNVVKKYNK 373 (457)
Q Consensus 297 ~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~g---g~~~~v~~Yd~ 373 (457)
++++++.-+. +...-.++..|..++.=+.+..-|. . -+..+.|...|-+. .....+.+||.
T Consensus 117 ~D~LLlAR~D---Gh~nLGvy~ldr~~g~~~~L~~~ps----------~---KG~~~~D~a~F~i~~~~~g~~~i~~~Dl 180 (339)
T PF09910_consen 117 EDRLLLARAD---GHANLGVYSLDRRTGKAEKLSSNPS----------L---KGTLVHDYACFGINNFHKGVSGIHCLDL 180 (339)
T ss_pred cCEEEEEecC---CcceeeeEEEcccCCceeeccCCCC----------c---CceEeeeeEEEeccccccCCceEEEEEc
Confidence 6778876332 2233457888888888887766544 1 22344444444441 13568999999
Q ss_pred CCCcE
Q 012755 374 TNNSW 378 (457)
Q Consensus 374 ~~~~W 378 (457)
.+++|
T Consensus 181 i~~~~ 185 (339)
T PF09910_consen 181 ISGKW 185 (339)
T ss_pred cCCeE
Confidence 99999
No 210
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=28.34 E-value=6.5e+02 Score=25.63 Aligned_cols=146 Identities=12% Similarity=-0.028 Sum_probs=73.0
Q ss_pred EEEEEECCCCcEEeCCCCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCcceeEEEECC
Q 012755 219 AIWMYSLIANCWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFMDG 298 (457)
Q Consensus 219 ~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g 298 (457)
.++++|..+++=..+...+..-..+....-+.+|.+..-.+ ...+++++|..+++=.++..... ...+-.-.-+|
T Consensus 219 ~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rd----g~~~iy~~dl~~~~~~~Lt~~~g-i~~~Ps~spdG 293 (425)
T COG0823 219 RIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRD----GSPDIYLMDLDGKNLPRLTNGFG-INTSPSWSPDG 293 (425)
T ss_pred eEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCC----CCccEEEEcCCCCcceecccCCc-cccCccCCCCC
Confidence 56777776665544433322222222223344444443323 24689999998887333322221 11122223355
Q ss_pred EEEEEe-ccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecC---CCeEEEEECC
Q 012755 299 KFYIIG-GMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQA---TNVVKKYNKT 374 (457)
Q Consensus 299 ~iyv~G-G~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~---~~~v~~Yd~~ 374 (457)
+-+++. ...+ ...++.||++...=+++..-.. ... .....-+|+.+++-.. .-.+..+|+.
T Consensus 294 ~~ivf~Sdr~G----~p~I~~~~~~g~~~~riT~~~~----------~~~-~p~~SpdG~~i~~~~~~~g~~~i~~~~~~ 358 (425)
T COG0823 294 SKIVFTSDRGG----RPQIYLYDLEGSQVTRLTFSGG----------GNS-NPVWSPDGDKIVFESSSGGQWDIDKNDLA 358 (425)
T ss_pred CEEEEEeCCCC----CcceEEECCCCCceeEeeccCC----------CCc-CccCCCCCCEEEEEeccCCceeeEEeccC
Confidence 544443 2221 3378899998877666653222 111 1222334544444321 1458889998
Q ss_pred CCc-EEEeccC
Q 012755 375 NNS-WTVVKRL 384 (457)
Q Consensus 375 ~~~-W~~v~~~ 384 (457)
++. |+.+..-
T Consensus 359 ~~~~~~~lt~~ 369 (425)
T COG0823 359 SGGKIRILTST 369 (425)
T ss_pred CCCcEEEcccc
Confidence 877 9887643
No 211
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=28.15 E-value=3.8e+02 Score=28.10 Aligned_cols=81 Identities=10% Similarity=0.127 Sum_probs=45.5
Q ss_pred CceEEEEECCCCceEEcC--CCCCCCCCCCCCCCCCCCCEEEE--ECCEEEEEecCCCeEEEEECCCCc--EEEeccCCC
Q 012755 313 LTCGEEYNLETRTWKRIE--NMYPSNVGTQSNPAMSSPPLVAV--VNNQLYSADQATNVVKKYNKTNNS--WTVVKRLPV 386 (457)
Q Consensus 313 ~~~~~~yd~~t~~W~~~~--~~~~~~~~~~~~~~~r~~~~~~~--~~g~ly~~gg~~~~v~~Yd~~~~~--W~~v~~~p~ 386 (457)
.-+.-+|+...++-+.+. .+|- .+....+. .+...+++|...++|..||..++. +.+.+-+|.
T Consensus 235 ~~d~ciYE~~r~klqrvsvtsipL-----------~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~ 303 (545)
T PF11768_consen 235 SADSCIYECSRNKLQRVSVTSIPL-----------PSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPT 303 (545)
T ss_pred eeEEEEEEeecCceeEEEEEEEec-----------CCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccce
Confidence 334456777777655543 2222 12222332 256778899888999999998763 333332332
Q ss_pred ccCCCCcceEEEEEeCCEEEEEcCcCC
Q 012755 387 RANSFNGWGLAFKACGNSLLVIGGHRE 413 (457)
Q Consensus 387 ~~~~~~~~~~~~~~~~g~lyv~GG~~~ 413 (457)
... --.+|.++++|+..|
T Consensus 304 ~ia---------WHp~gai~~V~s~qG 321 (545)
T PF11768_consen 304 LIA---------WHPDGAIFVVGSEQG 321 (545)
T ss_pred EEE---------EcCCCcEEEEEcCCc
Confidence 221 122677778776653
No 212
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=27.88 E-value=5.4e+02 Score=24.53 Aligned_cols=77 Identities=17% Similarity=0.195 Sum_probs=41.6
Q ss_pred CCEEEEEe-ee-cCCC----CccceEEEEeCCCCcEEEC----CCCCCCCcceeEEEE-C-------CEEEEEeccCCCC
Q 012755 249 GEVAIVAG-GT-DKNG----CILKSAELYNSELGTWETL----PDMNLPRKLCSGFFM-D-------GKFYIIGGMSSPT 310 (457)
Q Consensus 249 ~~~iyv~G-G~-~~~~----~~~~~v~~yd~~t~~W~~~----~~~p~~r~~~~~~~~-~-------g~iyv~GG~~~~~ 310 (457)
.+.++|+- |. +..+ .....+..||++|++=.+. ++...+.+...-.++ . +.+|+.--
T Consensus 11 ~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~----- 85 (287)
T PF03022_consen 11 CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDS----- 85 (287)
T ss_dssp TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEET-----
T ss_pred CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCC-----
Confidence 46777772 33 2211 2346788999999973221 222223333333333 2 36788632
Q ss_pred CCCceEEEEECCCCc-eEEcCC
Q 012755 311 DPLTCGEEYNLETRT-WKRIEN 331 (457)
Q Consensus 311 ~~~~~~~~yd~~t~~-W~~~~~ 331 (457)
....+.+||..+++ |+.+..
T Consensus 86 -~~~glIV~dl~~~~s~Rv~~~ 106 (287)
T PF03022_consen 86 -GGPGLIVYDLATGKSWRVLHN 106 (287)
T ss_dssp -TTCEEEEEETTTTEEEEEETC
T ss_pred -CcCcEEEEEccCCcEEEEecC
Confidence 23478999999975 665554
No 213
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=27.88 E-value=2.2e+02 Score=27.96 Aligned_cols=179 Identities=13% Similarity=0.107 Sum_probs=89.9
Q ss_pred eCCEEEEEceecCCcEEEEEECCCCcEEeCCCCCCCccceeEE-eeCCEEEEEeeecCCCCccceEEEEeCCCCcEEECC
Q 012755 204 VGTQLLVFGRELSGFAIWMYSLIANCWSKCPQMNLPRCLFGSS-SLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLP 282 (457)
Q Consensus 204 ~~~~lyv~GG~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 282 (457)
.++...|.|-. .+.+.++|..+..-..+ .....+..++ -+++++.+.|.. ..++-+.|..|++-
T Consensus 205 YDD~kiVSGlr--DnTikiWD~n~~~c~~~---L~GHtGSVLCLqyd~rviisGSS------DsTvrvWDv~tge~---- 269 (499)
T KOG0281|consen 205 YDDEKIVSGLR--DNTIKIWDKNSLECLKI---LTGHTGSVLCLQYDERVIVSGSS------DSTVRVWDVNTGEP---- 269 (499)
T ss_pred ecchhhhcccc--cCceEEeccccHHHHHh---hhcCCCcEEeeeccceEEEecCC------CceEEEEeccCCch----
Confidence 45555555532 34566677655432221 1222222222 247777766543 25677788766652
Q ss_pred CCCCCCcceeEE-----EECCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCE
Q 012755 283 DMNLPRKLCSGF-----FMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQ 357 (457)
Q Consensus 283 ~~p~~r~~~~~~-----~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ 357 (457)
+.. ...|+-+ +-+|.|.-. . .-.++.++|...-+ .++-+.. -...|....++-++++
T Consensus 270 -l~t-lihHceaVLhlrf~ng~mvtc-S------kDrsiaVWdm~sps--~it~rrV-------LvGHrAaVNvVdfd~k 331 (499)
T KOG0281|consen 270 -LNT-LIHHCEAVLHLRFSNGYMVTC-S------KDRSIAVWDMASPT--DITLRRV-------LVGHRAAVNVVDFDDK 331 (499)
T ss_pred -hhH-HhhhcceeEEEEEeCCEEEEe-c------CCceeEEEeccCch--HHHHHHH-------Hhhhhhheeeeccccc
Confidence 211 1122222 224433322 1 12345566655433 2221111 0114444456667888
Q ss_pred EEEEecCCCeEEEEECCCCcEEEeccCCCccCCCCcceEEEEEeCCEEEEEcCcCCCCCceEEEEEeeCCC
Q 012755 358 LYSADQATNVVKKYNKTNNSWTVVKRLPVRANSFNGWGLAFKACGNSLLVIGGHRELQGEIIVLHSWDPTD 428 (457)
Q Consensus 358 ly~~gg~~~~v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~~~~~~v~~y~~~~ 428 (457)
..+-......+.+++..+.+..+. +... .-|.|+..+.|+++|-|..+. .+-+||.+.
T Consensus 332 yIVsASgDRTikvW~~st~efvRt--l~gH-----kRGIAClQYr~rlvVSGSSDn------tIRlwdi~~ 389 (499)
T KOG0281|consen 332 YIVSASGDRTIKVWSTSTCEFVRT--LNGH-----KRGIACLQYRDRLVVSGSSDN------TIRLWDIEC 389 (499)
T ss_pred eEEEecCCceEEEEeccceeeehh--hhcc-----cccceehhccCeEEEecCCCc------eEEEEeccc
Confidence 444333455788888888766443 2222 235778889999999886552 466677665
No 214
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=27.81 E-value=5.6e+02 Score=24.75 Aligned_cols=213 Identities=15% Similarity=0.122 Sum_probs=99.0
Q ss_pred cCccEEEEeCCCCcEEeCCCCCCCccccCCCeeeEEeCCEEEEEceecCCcEEEEEECCCCcE-EeCC----CCCCCccc
Q 012755 168 ILMPWEAFDPLRQRWMRLPRMQCDECFTSADKESLAVGTQLLVFGRELSGFAIWMYSLIANCW-SKCP----QMNLPRCL 242 (457)
Q Consensus 168 ~~~~~~~ydp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W-~~l~----~lp~~r~~ 242 (457)
..+.++.|||.+.+=.... .|...... ...-.++.|.+.. ..+..+++.+..- +.+. ..+..|.+
T Consensus 45 ~~~~i~r~~~~~g~~~~~~-~p~~~~~~----~~~d~~g~Lv~~~-----~g~~~~~~~~~~~~t~~~~~~~~~~~~r~N 114 (307)
T COG3386 45 LGGRIHRLDPETGKKRVFP-SPGGFSSG----ALIDAGGRLIACE-----HGVRLLDPDTGGKITLLAEPEDGLPLNRPN 114 (307)
T ss_pred CCCeEEEecCCcCceEEEE-CCCCcccc----eeecCCCeEEEEc-----cccEEEeccCCceeEEeccccCCCCcCCCC
Confidence 3577888998755433222 12111000 0112233443332 1345566654433 4443 23445555
Q ss_pred eeEEeeCCEEEEEeee-----cCCCCccceEEEEeCCCCcEEECCCCCCCCcceeEEEECC-EEEEEeccCCCCCCCceE
Q 012755 243 FGSSSLGEVAIVAGGT-----DKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFMDG-KFYIIGGMSSPTDPLTCG 316 (457)
Q Consensus 243 ~~~~~~~~~iyv~GG~-----~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g-~iyv~GG~~~~~~~~~~~ 316 (457)
=+.+.-++.+|+---. .........++++|| .+...++-.-.....+.-+..-++ .+|+.- ...+.+
T Consensus 115 D~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aD------T~~~~i 187 (307)
T COG3386 115 DGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVAD------TPANRI 187 (307)
T ss_pred ceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEe------CCCCeE
Confidence 5555556777764322 112234557999999 455554422111111222223355 677762 234667
Q ss_pred EEEECCC--------CceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecC-CCeEEEEECCCCcEEEeccCCCc
Q 012755 317 EEYNLET--------RTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQA-TNVVKKYNKTNNSWTVVKRLPVR 387 (457)
Q Consensus 317 ~~yd~~t--------~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~-~~~v~~Yd~~~~~W~~v~~~p~~ 387 (457)
++|+... +.+..... .+ .+---..+--+|.||+.... ...|.+|+|+...=.++ .+|..
T Consensus 188 ~r~~~d~~~g~~~~~~~~~~~~~-~~----------G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i-~lP~~ 255 (307)
T COG3386 188 HRYDLDPATGPIGGRRGFVDFDE-EP----------GLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGEI-KLPVK 255 (307)
T ss_pred EEEecCcccCccCCcceEEEccC-CC----------CCCCceEEeCCCCEEEecccCCceEEEECCCCcEEEEE-ECCCC
Confidence 7776652 01111111 00 11111233347899965432 24899999984333333 45532
Q ss_pred cCCCCcceEEEE-EeCCEEEEEcCcCC
Q 012755 388 ANSFNGWGLAFK-ACGNSLLVIGGHRE 413 (457)
Q Consensus 388 ~~~~~~~~~~~~-~~~g~lyv~GG~~~ 413 (457)
.... +++. ...+.|||.....+
T Consensus 256 ~~t~----~~FgG~~~~~L~iTs~~~~ 278 (307)
T COG3386 256 RPTN----PAFGGPDLNTLYITSARSG 278 (307)
T ss_pred CCcc----ceEeCCCcCEEEEEecCCC
Confidence 2111 1111 11367888876653
No 215
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=27.09 E-value=2.5e+02 Score=28.94 Aligned_cols=99 Identities=15% Similarity=0.173 Sum_probs=53.9
Q ss_pred EECCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecCCCeEEEEECC
Q 012755 295 FMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQATNVVKKYNKT 374 (457)
Q Consensus 295 ~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~~~~v~~Yd~~ 374 (457)
.-+|+-.++||. ...+-++|+.+-+=+.-..++. .++.+.+.++..|.++...-...+.|.+||..
T Consensus 474 ~pdgrtLivGGe------astlsiWDLAapTprikaelts--------sapaCyALa~spDakvcFsccsdGnI~vwDLh 539 (705)
T KOG0639|consen 474 LPDGRTLIVGGE------ASTLSIWDLAAPTPRIKAELTS--------SAPACYALAISPDAKVCFSCCSDGNIAVWDLH 539 (705)
T ss_pred cCCCceEEeccc------cceeeeeeccCCCcchhhhcCC--------cchhhhhhhcCCccceeeeeccCCcEEEEEcc
Confidence 337888888885 3456678877655433333222 12333333445577776665567789999998
Q ss_pred CCcEEEeccCCCccCCCCcceEEEEEeCCEEEEEcCcC
Q 012755 375 NNSWTVVKRLPVRANSFNGWGLAFKACGNSLLVIGGHR 412 (457)
Q Consensus 375 ~~~W~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~ 412 (457)
+++= |..++.... +..+.-+..+|.=+=.||.+
T Consensus 540 nq~~--VrqfqGhtD---GascIdis~dGtklWTGGlD 572 (705)
T KOG0639|consen 540 NQTL--VRQFQGHTD---GASCIDISKDGTKLWTGGLD 572 (705)
T ss_pred ccee--eecccCCCC---CceeEEecCCCceeecCCCc
Confidence 8753 333433322 11121222345444457765
No 216
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=25.66 E-value=20 Score=35.87 Aligned_cols=43 Identities=9% Similarity=0.114 Sum_probs=37.7
Q ss_pred CCCCCcHHHHhhhceeccccccCcccccChhhhhhhccCcchh
Q 012755 109 FLPGLHDDATLDILAWSSRSDYPTLSCLNRKFKSLIASGYLYK 151 (457)
Q Consensus 109 ~~~~LPddl~~~iLarlp~~~~~~l~~v~k~w~~li~s~~~~~ 151 (457)
..-.||.|+...+++.|..+++.+.+.+|+.|+.+..+..-|.
T Consensus 71 ~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q 113 (483)
T KOG4341|consen 71 ISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQ 113 (483)
T ss_pred ccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccce
Confidence 3348999999999999999999999999999999998865443
No 217
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=25.60 E-value=6.1e+02 Score=24.44 Aligned_cols=62 Identities=18% Similarity=0.264 Sum_probs=33.2
Q ss_pred CCEEEEEceecCCcEEEE-EECCCCcEEeCCCCCCCccceeEEee------CCEEEEEeeecCCCCccceEEEEeCCCCc
Q 012755 205 GTQLLVFGRELSGFAIWM-YSLIANCWSKCPQMNLPRCLFGSSSL------GEVAIVAGGTDKNGCILKSAELYNSELGT 277 (457)
Q Consensus 205 ~~~lyv~GG~~~~~~v~~-yd~~t~~W~~l~~lp~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~v~~yd~~t~~ 277 (457)
+|..++.||.+..--+|. |.-..|-|..- +|+.|++ ++...+..|. -..+..+|.+|++
T Consensus 58 ~gs~~aSgG~Dr~I~LWnv~gdceN~~~lk--------gHsgAVM~l~~~~d~s~i~S~gt------Dk~v~~wD~~tG~ 123 (338)
T KOG0265|consen 58 DGSCFASGGSDRAIVLWNVYGDCENFWVLK--------GHSGAVMELHGMRDGSHILSCGT------DKTVRGWDAETGK 123 (338)
T ss_pred CCCeEeecCCcceEEEEeccccccceeeec--------cccceeEeeeeccCCCEEEEecC------CceEEEEecccce
Confidence 556666676544322333 44456666542 3444443 3333333332 2578889999887
Q ss_pred EEE
Q 012755 278 WET 280 (457)
Q Consensus 278 W~~ 280 (457)
-..
T Consensus 124 ~~r 126 (338)
T KOG0265|consen 124 RIR 126 (338)
T ss_pred eee
Confidence 543
No 218
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=25.20 E-value=6.8e+02 Score=24.80 Aligned_cols=143 Identities=6% Similarity=0.064 Sum_probs=72.5
Q ss_pred CCEEEEEceecCCcEEEEEECCCCcEEeCCCCCCCccceeE--EeeCCEEEEEeeecCCCCccceEEEEeCCCC--cEEE
Q 012755 205 GTQLLVFGRELSGFAIWMYSLIANCWSKCPQMNLPRCLFGS--SSLGEVAIVAGGTDKNGCILKSAELYNSELG--TWET 280 (457)
Q Consensus 205 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~--~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~--~W~~ 280 (457)
++.+.+.||. .+..+.|+..++.|--. ++.-.-.-.. -..++.+.+-|+..+ .+.+++..|+ .|..
T Consensus 75 ~~~l~aTGGg--DD~AflW~~~~ge~~~e--ltgHKDSVt~~~FshdgtlLATGdmsG------~v~v~~~stg~~~~~~ 144 (399)
T KOG0296|consen 75 NNNLVATGGG--DDLAFLWDISTGEFAGE--LTGHKDSVTCCSFSHDGTLLATGDMSG------KVLVFKVSTGGEQWKL 144 (399)
T ss_pred CCceEEecCC--CceEEEEEccCCcceeE--ecCCCCceEEEEEccCceEEEecCCCc------cEEEEEcccCceEEEe
Confidence 3445555653 34578888888875321 1211111112 234677777777653 3555555544 4765
Q ss_pred CCCCCCC--CcceeEEEECCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEE
Q 012755 281 LPDMNLP--RKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQL 358 (457)
Q Consensus 281 ~~~~p~~--r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~l 358 (457)
..++..- ...|. .+.|.++|-. ...+|+|...+..=.++-.-+. .+...+-..-+|+.
T Consensus 145 ~~e~~dieWl~WHp----~a~illAG~~------DGsvWmw~ip~~~~~kv~~Gh~----------~~ct~G~f~pdGKr 204 (399)
T KOG0296|consen 145 DQEVEDIEWLKWHP----RAHILLAGST------DGSVWMWQIPSQALCKVMSGHN----------SPCTCGEFIPDGKR 204 (399)
T ss_pred ecccCceEEEEecc----cccEEEeecC------CCcEEEEECCCcceeeEecCCC----------CCcccccccCCCce
Confidence 4222110 00111 2345555432 2356778776653222211111 22222333346777
Q ss_pred EEEecCCCeEEEEECCCCc
Q 012755 359 YSADQATNVVKKYNKTNNS 377 (457)
Q Consensus 359 y~~gg~~~~v~~Yd~~~~~ 377 (457)
.+.|...+.|.+||+.+.+
T Consensus 205 ~~tgy~dgti~~Wn~ktg~ 223 (399)
T KOG0296|consen 205 ILTGYDDGTIIVWNPKTGQ 223 (399)
T ss_pred EEEEecCceEEEEecCCCc
Confidence 7777777889999998873
No 219
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=25.10 E-value=5e+02 Score=23.21 Aligned_cols=71 Identities=17% Similarity=0.151 Sum_probs=41.9
Q ss_pred cEEEEEECCCCcEEeCC--CCC---CCccceeEEeeCC-EEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCcc
Q 012755 218 FAIWMYSLIANCWSKCP--QMN---LPRCLFGSSSLGE-VAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKL 290 (457)
Q Consensus 218 ~~v~~yd~~t~~W~~l~--~lp---~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~ 290 (457)
..+|++|..++.|..+. +-+ .|. ...-.-+. .++++|...+.-..-..+++|++.|+.=+.+-+.......
T Consensus 88 GkIYIkn~~~~~~~~L~i~~~~~k~sPK--~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~~dkkqQ 164 (200)
T PF15525_consen 88 GKIYIKNLNNNNWWSLQIDQNEEKYSPK--YIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEWKDKKQQ 164 (200)
T ss_pred eeEEEEecCCCceEEEEecCcccccCCc--eeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeecccccee
Confidence 57899999999987652 221 222 11112233 4555553322222336799999999998888766554433
No 220
>PRK01029 tolB translocation protein TolB; Provisional
Probab=25.01 E-value=7.3e+02 Score=25.13 Aligned_cols=119 Identities=13% Similarity=-0.016 Sum_probs=0.0
Q ss_pred CCEEEEEceecCCcEEEEEEC--CCCcEEeCCCCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEECC
Q 012755 205 GTQLLVFGRELSGFAIWMYSL--IANCWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLP 282 (457)
Q Consensus 205 ~~~lyv~GG~~~~~~v~~yd~--~t~~W~~l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 282 (457)
|..|++.........+++++. ..+.=+.+......-.......-+.+|++.+..++. ..+++||+.+++.+.+.
T Consensus 292 G~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~----~~I~v~dl~~g~~~~Lt 367 (428)
T PRK01029 292 GTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGV----RQICVYDLATGRDYQLT 367 (428)
T ss_pred CCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCC----cEEEEEECCCCCeEEcc
Q ss_pred CCCCCCcceeEEEECCEEEEEeccCCCCCCCceEEEEECCCCceEEcCC
Q 012755 283 DMNLPRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIEN 331 (457)
Q Consensus 283 ~~p~~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 331 (457)
.-+..-....-.--+..|+......+.. .++.+|+.+++.+.+..
T Consensus 368 ~~~~~~~~p~wSpDG~~L~f~~~~~g~~----~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 368 TSPENKESPSWAIDSLHLVYSAGNSNES----ELYLISLITKKTRKIVI 412 (428)
T ss_pred CCCCCccceEECCCCCEEEEEECCCCCc----eEEEEECCCCCEEEeec
No 221
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=24.19 E-value=6.3e+02 Score=24.06 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=12.5
Q ss_pred EEEEEe--CCEEEEEcCcCCCC
Q 012755 396 LAFKAC--GNSLLVIGGHRELQ 415 (457)
Q Consensus 396 ~~~~~~--~g~lyv~GG~~~~~ 415 (457)
+..+++ +-+|+++||.....
T Consensus 150 i~~~vy~p~h~LLlVgG~~~~~ 171 (282)
T PF15492_consen 150 INSAVYHPKHRLLLVGGCEQNQ 171 (282)
T ss_pred eeEEEEcCCCCEEEEeccCCCC
Confidence 334444 34799999986543
No 222
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=23.76 E-value=7.9e+02 Score=25.03 Aligned_cols=120 Identities=12% Similarity=-0.014 Sum_probs=65.3
Q ss_pred eCCEEEEEce-ecCCcEEEEEECCCCcEEeCCCCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEECC
Q 012755 204 VGTQLLVFGR-ELSGFAIWMYSLIANCWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLP 282 (457)
Q Consensus 204 ~~~~lyv~GG-~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 282 (457)
.+|+-++|-. .....+++.+|..+++=+++......-...+...-|.+|+..-...+ ...++++|+...+=+.+.
T Consensus 247 pDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G----~p~I~~~~~~g~~~~riT 322 (425)
T COG0823 247 PDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGG----RPQIYLYDLEGSQVTRLT 322 (425)
T ss_pred CCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCC----CcceEEECCCCCceeEee
Confidence 3444333332 23456899999998874444333322222233333555555432222 348999999888755553
Q ss_pred CCCCCCcceeEEEECCEEEEEeccCCCCCCCceEEEEECCCCc-eEEcCC
Q 012755 283 DMNLPRKLCSGFFMDGKFYIIGGMSSPTDPLTCGEEYNLETRT-WKRIEN 331 (457)
Q Consensus 283 ~~p~~r~~~~~~~~~g~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~ 331 (457)
.-..... .....-+|+.+++-+... + ...+..+|+.++. |+.+..
T Consensus 323 ~~~~~~~-~p~~SpdG~~i~~~~~~~-g--~~~i~~~~~~~~~~~~~lt~ 368 (425)
T COG0823 323 FSGGGNS-NPVWSPDGDKIVFESSSG-G--QWDIDKNDLASGGKIRILTS 368 (425)
T ss_pred ccCCCCc-CccCCCCCCEEEEEeccC-C--ceeeEEeccCCCCcEEEccc
Confidence 2211111 223344666666655331 1 1568889998877 888764
No 223
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=23.68 E-value=4.9e+02 Score=25.25 Aligned_cols=46 Identities=15% Similarity=0.160 Sum_probs=29.6
Q ss_pred CCcEEEeccCCCccCCCCcceEEEEEeCCEEEEEcCcCCCCCceEEEEEeeCCCC
Q 012755 375 NNSWTVVKRLPVRANSFNGWGLAFKACGNSLLVIGGHRELQGEIIVLHSWDPTDG 429 (457)
Q Consensus 375 ~~~W~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~~~~~~v~~y~~~~~ 429 (457)
..+|+.++-...... .....++++++...+-||.+. .|.+||...+
T Consensus 28 s~~~~l~~lF~~~aH---~~sitavAVs~~~~aSGssDe------tI~IYDm~k~ 73 (362)
T KOG0294|consen 28 SVKPTLKPLFAFSAH---AGSITALAVSGPYVASGSSDE------TIHIYDMRKR 73 (362)
T ss_pred ccceeeecccccccc---ccceeEEEecceeEeccCCCC------cEEEEeccch
Confidence 346776654433332 122556678888888787764 5899999875
No 224
>PF13013 F-box-like_2: F-box-like domain
Probab=23.61 E-value=30 Score=27.82 Aligned_cols=29 Identities=21% Similarity=0.061 Sum_probs=24.4
Q ss_pred CCCCcHHHHhhhceeccccccCcccccCh
Q 012755 110 LPGLHDDATLDILAWSSRSDYPTLSCLNR 138 (457)
Q Consensus 110 ~~~LPddl~~~iLarlp~~~~~~l~~v~k 138 (457)
+..||+||++.|+..-....+..+...|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 67899999999999888887777666666
No 225
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=23.36 E-value=6.8e+02 Score=24.16 Aligned_cols=61 Identities=23% Similarity=0.281 Sum_probs=33.5
Q ss_pred CCEEEEEeeecCCCCccceEE-EEeCCCCcEEECCCCCCCCcceeEEEE------CC-EEEEEeccCCCCCCCceEEEEE
Q 012755 249 GEVAIVAGGTDKNGCILKSAE-LYNSELGTWETLPDMNLPRKLCSGFFM------DG-KFYIIGGMSSPTDPLTCGEEYN 320 (457)
Q Consensus 249 ~~~iyv~GG~~~~~~~~~~v~-~yd~~t~~W~~~~~~p~~r~~~~~~~~------~g-~iyv~GG~~~~~~~~~~~~~yd 320 (457)
+|..++.||++.. --+| +|.-..|.|..- .|++|++ ++ .|+..| .-..+..||
T Consensus 58 ~gs~~aSgG~Dr~----I~LWnv~gdceN~~~lk--------gHsgAVM~l~~~~d~s~i~S~g-------tDk~v~~wD 118 (338)
T KOG0265|consen 58 DGSCFASGGSDRA----IVLWNVYGDCENFWVLK--------GHSGAVMELHGMRDGSHILSCG-------TDKTVRGWD 118 (338)
T ss_pred CCCeEeecCCcce----EEEEeccccccceeeec--------cccceeEeeeeccCCCEEEEec-------CCceEEEEe
Confidence 5566677776532 1122 255566677543 4444443 23 344443 235688899
Q ss_pred CCCCceEE
Q 012755 321 LETRTWKR 328 (457)
Q Consensus 321 ~~t~~W~~ 328 (457)
.++++=.+
T Consensus 119 ~~tG~~~r 126 (338)
T KOG0265|consen 119 AETGKRIR 126 (338)
T ss_pred cccceeee
Confidence 99987543
No 226
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=23.24 E-value=7.7e+02 Score=24.75 Aligned_cols=132 Identities=11% Similarity=-0.031 Sum_probs=55.9
Q ss_pred cEEEEEECCCCcEEeCCCCCCCccceeE-EeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEECC-CCCCCCcceeEEE
Q 012755 218 FAIWMYSLIANCWSKCPQMNLPRCLFGS-SSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLP-DMNLPRKLCSGFF 295 (457)
Q Consensus 218 ~~v~~yd~~t~~W~~l~~lp~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~-~~p~~r~~~~~~~ 295 (457)
..+..-|..|++.+.+-.-. ..-+|-. ...+..+.++--...-......+|..|........+- .++.....|.--+
T Consensus 168 ~~i~~idl~tG~~~~v~~~~-~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~ 246 (386)
T PF14583_consen 168 CRIFTIDLKTGERKVVFEDT-DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWV 246 (386)
T ss_dssp EEEEEEETTT--EEEEEEES-S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-
T ss_pred ceEEEEECCCCceeEEEecC-ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccccccc
Confidence 45677777777766542111 0111211 1123334444211111122348899998766655553 3332233444444
Q ss_pred ECCEEEE-EeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecC
Q 012755 296 MDGKFYI-IGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQA 364 (457)
Q Consensus 296 ~~g~iyv-~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~ 364 (457)
-+|+.+. .+...+. ....+..||++|..=+.+..|+ .+.|-....+|+|++-.|.
T Consensus 247 ~DG~~i~y~~~~~~~--~~~~i~~~d~~t~~~~~~~~~p------------~~~H~~ss~Dg~L~vGDG~ 302 (386)
T PF14583_consen 247 PDGSTIWYDSYTPGG--QDFWIAGYDPDTGERRRLMEMP------------WCSHFMSSPDGKLFVGDGG 302 (386)
T ss_dssp TTSS-EEEEEEETTT----EEEEEE-TTT--EEEEEEE-------------SEEEEEE-TTSSEEEEEE-
T ss_pred CCCCEEEEEeecCCC--CceEEEeeCCCCCCceEEEeCC------------ceeeeEEcCCCCEEEecCC
Confidence 4565333 3332221 2446788999987544444443 3446666678888877553
No 227
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=23.01 E-value=6.6e+02 Score=23.91 Aligned_cols=184 Identities=16% Similarity=0.234 Sum_probs=87.4
Q ss_pred cEEEEEECCCCcEEe---CCC-CCCCccceeEEee-C-------CEEEEEeeecCCCCccceEEEEeCCCCc-EEECCCC
Q 012755 218 FAIWMYSLIANCWSK---CPQ-MNLPRCLFGSSSL-G-------EVAIVAGGTDKNGCILKSAELYNSELGT-WETLPDM 284 (457)
Q Consensus 218 ~~v~~yd~~t~~W~~---l~~-lp~~r~~~~~~~~-~-------~~iyv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~ 284 (457)
..+..||..|++=.+ +|+ ...+.+...-.++ . +.+|+.-- ....+.+||..+++ |+.....
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~------~~~glIV~dl~~~~s~Rv~~~~ 107 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDS------GGPGLIVYDLATGKSWRVLHNS 107 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEET------TTCEEEEEETTTTEEEEEETCG
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCC------CcCcEEEEEccCCcEEEEecCC
Confidence 368889999887533 222 2223333332222 1 36777621 12489999999976 7777654
Q ss_pred CCCCcceeEEEECCEEEEEe-cc---C-CCCCCCceEEEEECCCCc-eEEcCC--CCCCCC--CC----CCC-CCC---C
Q 012755 285 NLPRKLCSGFFMDGKFYIIG-GM---S-SPTDPLTCGEEYNLETRT-WKRIEN--MYPSNV--GT----QSN-PAM---S 346 (457)
Q Consensus 285 p~~r~~~~~~~~~g~iyv~G-G~---~-~~~~~~~~~~~yd~~t~~-W~~~~~--~~~~~~--~~----~~~-~~~---r 346 (457)
..+........++|..+-.. |. . .....-.....|.+-+.. +-.++. +..+.. .. ... ... .
T Consensus 108 ~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~ 187 (287)
T PF03022_consen 108 FSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQ 187 (287)
T ss_dssp CTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---S
T ss_pred cceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCC
Confidence 43333344455666655321 11 0 000011134445554433 333321 000000 00 000 001 1
Q ss_pred CCCEEEEECCEEEEEecCCCeEEEEECCC----CcEEEeccCCCccCCCCcceEEEEEeC---CEEEEEcCc
Q 012755 347 SPPLVAVVNNQLYSADQATNVVKKYNKTN----NSWTVVKRLPVRANSFNGWGLAFKACG---NSLLVIGGH 411 (457)
Q Consensus 347 ~~~~~~~~~g~ly~~gg~~~~v~~Yd~~~----~~W~~v~~~p~~~~~~~~~~~~~~~~~---g~lyv~GG~ 411 (457)
+...++--+|.||+-.-..+.|.++|+.+ +..+.+..-+.... +..++.... |.||+.--.
T Consensus 188 s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~----~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 188 SDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQ----WPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp ECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GS----SEEEEEE-T--TS-EEEEE-S
T ss_pred CceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceee----ccceeeeccccCceEEEEECc
Confidence 11112223789998888889999999987 56777765444222 223344444 889998643
No 228
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=22.72 E-value=8.9e+02 Score=25.29 Aligned_cols=124 Identities=12% Similarity=0.037 Sum_probs=62.3
Q ss_pred CCcceeEEEE--CCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEecC
Q 012755 287 PRKLCSGFFM--DGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQA 364 (457)
Q Consensus 287 ~r~~~~~~~~--~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg~ 364 (457)
.|-..+.+.+ +|++ +.+|+.. .+++.+|. +.|..-+.+..- -...+...........+|++++--|.
T Consensus 316 ~Rv~~tsC~~nrdg~~-iAagc~D-----GSIQ~W~~--~~~~v~p~~~vk---~AH~~g~~Itsi~FS~dg~~LlSRg~ 384 (641)
T KOG0772|consen 316 KRVPVTSCAWNRDGKL-IAAGCLD-----GSIQIWDK--GSRTVRPVMKVK---DAHLPGQDITSISFSYDGNYLLSRGF 384 (641)
T ss_pred cccCceeeecCCCcch-hhhcccC-----Cceeeeec--CCcccccceEee---eccCCCCceeEEEeccccchhhhccC
Confidence 3444444444 5666 4455432 34666765 555554443320 00000011111223457887777777
Q ss_pred CCeEEEEECCC-----CcEEEeccCCCccCCCCcceEEEEEeCCEEEEEcCcCCCCCceEEEEEeeCCC
Q 012755 365 TNVVKKYNKTN-----NSWTVVKRLPVRANSFNGWGLAFKACGNSLLVIGGHRELQGEIIVLHSWDPTD 428 (457)
Q Consensus 365 ~~~v~~Yd~~~-----~~W~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~~~~~~v~~y~~~~ 428 (457)
-+.+.+||... +.|+.+..+-.. +-++..-+.+|++.|-...+.-....++.||+.+
T Consensus 385 D~tLKvWDLrq~kkpL~~~tgL~t~~~~-------tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 385 DDTLKVWDLRQFKKPLNVRTGLPTPFPG-------TDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred CCceeeeeccccccchhhhcCCCccCCC-------CccccCCCceEEEecccccCCCCCceEEEEeccc
Confidence 78888888764 245544322111 1123355788888885543332233577888765
No 229
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=22.55 E-value=1.7e+02 Score=16.80 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=15.6
Q ss_pred EEEE-ECCEEEEEecCCCeEEEE
Q 012755 350 LVAV-VNNQLYSADQATNVVKKY 371 (457)
Q Consensus 350 ~~~~-~~g~ly~~gg~~~~v~~Y 371 (457)
++++ -+|.||+.......|++|
T Consensus 6 gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 6 GVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEETTSEEEEEECCCTEEEEE
T ss_pred EEEEeCCCCEEEEECCCCEEEEC
Confidence 4444 478999998666677765
No 230
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=21.80 E-value=7.3e+02 Score=23.94 Aligned_cols=111 Identities=12% Similarity=0.073 Sum_probs=50.6
Q ss_pred ccEEEEEecCccEEEEeCCCCcEEeCCCCCCCccccCCCeeeEEeCCEEEEEceecCCcEEEEEECCCCcEEeCCCCCCC
Q 012755 160 EHWVYLACILMPWEAFDPLRQRWMRLPRMQCDECFTSADKESLAVGTQLLVFGRELSGFAIWMYSLIANCWSKCPQMNLP 239 (457)
Q Consensus 160 ~~~l~~~~~~~~~~~ydp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~l~~lp~~ 239 (457)
...+.+....+.+..||..+.+-... +...... ......+......+.+.....+.+-..+..+|+.-+.=+-...
T Consensus 26 G~~litss~dDsl~LYd~~~g~~~~t--i~skkyG--~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~ 101 (311)
T KOG1446|consen 26 GLLLITSSEDDSLRLYDSLSGKQVKT--INSKKYG--VDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKK 101 (311)
T ss_pred CCEEEEecCCCeEEEEEcCCCceeeE--eeccccc--ccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCc
Confidence 34455555567889999887754322 1111111 1111122222222222222334566667777765443111112
Q ss_pred ccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEE
Q 012755 240 RCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWET 280 (457)
Q Consensus 240 r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~ 280 (457)
+...-.+.-.+..++.|+.+ ..+..+|.++.+.+-
T Consensus 102 ~V~sL~~sP~~d~FlS~S~D------~tvrLWDlR~~~cqg 136 (311)
T KOG1446|consen 102 RVNSLSVSPKDDTFLSSSLD------KTVRLWDLRVKKCQG 136 (311)
T ss_pred eEEEEEecCCCCeEEecccC------CeEEeeEecCCCCce
Confidence 21111111134566766644 356667777666544
No 231
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=21.07 E-value=4e+02 Score=22.37 Aligned_cols=60 Identities=18% Similarity=0.300 Sum_probs=35.1
Q ss_pred CEEEEEecCCCeEEEEECCCCcEEEeccCCCccCCCCcceEEEEEe---CCEEEEEcCcCCCCCceEEEEEeeCCC
Q 012755 356 NQLYSADQATNVVKKYNKTNNSWTVVKRLPVRANSFNGWGLAFKAC---GNSLLVIGGHRELQGEIIVLHSWDPTD 428 (457)
Q Consensus 356 g~ly~~gg~~~~v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~---~g~lyv~GG~~~~~~~~~~v~~y~~~~ 428 (457)
..+.++| ....+..||.+.|+=---+.+|.... .+.+..+ ...|.++||.. .+.-||-+-
T Consensus 64 ~D~LliG-t~t~llaYDV~~N~d~Fyke~~DGvn-----~i~~g~~~~~~~~l~ivGGnc-------si~Gfd~~G 126 (136)
T PF14781_consen 64 RDCLLIG-TQTSLLAYDVENNSDLFYKEVPDGVN-----AIVIGKLGDIPSPLVIVGGNC-------SIQGFDYEG 126 (136)
T ss_pred cCEEEEe-ccceEEEEEcccCchhhhhhCcccee-----EEEEEecCCCCCcEEEECceE-------EEEEeCCCC
Confidence 3456666 66789999999885221223333221 1111122 46799999976 466677764
No 232
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=20.99 E-value=7.7e+02 Score=23.94 Aligned_cols=68 Identities=10% Similarity=0.034 Sum_probs=39.4
Q ss_pred ccEEEEEecCccEEEEeCCCCcEEeCCCCCCCccccCCCeeeEEeCCEEEEEceecCCcEEEEEECCCCcE
Q 012755 160 EHWVYLACILMPWEAFDPLRQRWMRLPRMQCDECFTSADKESLAVGTQLLVFGRELSGFAIWMYSLIANCW 230 (457)
Q Consensus 160 ~~~l~~~~~~~~~~~ydp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W 230 (457)
..++.+....+.+..||..+-+-+.-. -|...........-....+.||+.|..++ .+..||-.+++.
T Consensus 228 GefllvgTdHp~~rlYdv~T~Qcfvsa-nPd~qht~ai~~V~Ys~t~~lYvTaSkDG--~IklwDGVS~rC 295 (430)
T KOG0640|consen 228 GEFLLVGTDHPTLRLYDVNTYQCFVSA-NPDDQHTGAITQVRYSSTGSLYVTASKDG--AIKLWDGVSNRC 295 (430)
T ss_pred CceEEEecCCCceeEEeccceeEeeec-CcccccccceeEEEecCCccEEEEeccCC--cEEeeccccHHH
Confidence 455555555677889998876654433 24332222211111224689999886543 577788877764
No 233
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=20.84 E-value=8.3e+02 Score=24.22 Aligned_cols=186 Identities=12% Similarity=0.016 Sum_probs=0.0
Q ss_pred cEEEEEECCCCc-EEeCCCCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCcceeEEEE
Q 012755 218 FAIWMYSLIANC-WSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFM 296 (457)
Q Consensus 218 ~~v~~yd~~t~~-W~~l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 296 (457)
+.+.+.|..|++ -.+++....+........-+.++||. .....+.++|+.+++ .+...+......+.++-
T Consensus 16 ~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~-------~rdg~vsviD~~~~~--~v~~i~~G~~~~~i~~s 86 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVA-------NRDGTVSVIDLATGK--VVATIKVGGNPRGIAVS 86 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEE-------ETTSEEEEEETTSSS--EEEEEE-SSEEEEEEE-
T ss_pred CEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEE-------cCCCeEEEEECCccc--EEEEEecCCCcceEEEc
Q ss_pred -CCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEec-CCCeEEEEECC
Q 012755 297 -DGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVAVVNNQLYSADQ-ATNVVKKYNKT 374 (457)
Q Consensus 297 -~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~ly~~gg-~~~~v~~Yd~~ 374 (457)
+|+..+.+.+ ..+.+.++|.+|.+=.+.-+....+... +.+|...-.....+..|++.- ..+.++..|..
T Consensus 87 ~DG~~~~v~n~-----~~~~v~v~D~~tle~v~~I~~~~~~~~~---~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~ 158 (369)
T PF02239_consen 87 PDGKYVYVANY-----EPGTVSVIDAETLEPVKTIPTGGMPVDG---PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYS 158 (369)
T ss_dssp -TTTEEEEEEE-----ETTEEEEEETTT--EEEEEE--EE-TTT---S---EEEEEE-SSSSEEEEEETTTTEEEEEETT
T ss_pred CCCCEEEEEec-----CCCceeEeccccccceeecccccccccc---cCCCceeEEecCCCCEEEEEEccCCeEEEEEec
Q ss_pred CCcEEEeccCCCccCCCCcceEEEEEeCCEEEEEcCcCCCCCceEEEEEeeCCCC
Q 012755 375 NNSWTVVKRLPVRANSFNGWGLAFKACGNSLLVIGGHRELQGEIIVLHSWDPTDG 429 (457)
Q Consensus 375 ~~~W~~v~~~p~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~~~~~~v~~y~~~~~ 429 (457)
...=..+..+.... ...-+...-+++.++++-...+. +-+.|.+++
T Consensus 159 d~~~~~~~~i~~g~----~~~D~~~dpdgry~~va~~~sn~-----i~viD~~~~ 204 (369)
T PF02239_consen 159 DPKNLKVTTIKVGR----FPHDGGFDPDGRYFLVAANGSNK-----IAVIDTKTG 204 (369)
T ss_dssp TSSCEEEEEEE--T----TEEEEEE-TTSSEEEEEEGGGTE-----EEEEETTTT
T ss_pred cccccceeeecccc----cccccccCcccceeeecccccce-----eEEEeeccc
No 234
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=20.70 E-value=7.2e+02 Score=23.42 Aligned_cols=128 Identities=9% Similarity=0.085 Sum_probs=61.6
Q ss_pred CcEEEEEECCCCcEEeCCCCCCCccceeEEeeCCEEEEEeeecCCCCccceEEEEeCCCCcEEECCCCCCCCcceeEEEE
Q 012755 217 GFAIWMYSLIANCWSKCPQMNLPRCLFGSSSLGEVAIVAGGTDKNGCILKSAELYNSELGTWETLPDMNLPRKLCSGFFM 296 (457)
Q Consensus 217 ~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 296 (457)
...|-.+|..|++-.+--.++.+....- ...++.|..+.- -.++...|+++-.=-+--.||.-... +.-.-
T Consensus 164 d~tVRLWD~rTgt~v~sL~~~s~VtSlE-vs~dG~ilTia~-------gssV~Fwdaksf~~lKs~k~P~nV~S-ASL~P 234 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLEFNSPVTSLE-VSQDGRILTIAY-------GSSVKFWDAKSFGLLKSYKMPCNVES-ASLHP 234 (334)
T ss_pred CCceEEEEeccCcEEEEEecCCCCccee-eccCCCEEEEec-------CceeEEeccccccceeeccCcccccc-ccccC
Confidence 3467888888886544322333322111 223555555421 12333444433221111234432211 11122
Q ss_pred CCEEEEEeccCCCCCCCceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCCEEE---EECCEEEEEecCCCeEEEE
Q 012755 297 DGKFYIIGGMSSPTDPLTCGEEYNLETRTWKRIENMYPSNVGTQSNPAMSSPPLVA---VVNNQLYSADQATNVVKKY 371 (457)
Q Consensus 297 ~g~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~g~ly~~gg~~~~v~~Y 371 (457)
+..+||.||.+ ..++.||..|+.=... ... ...++..+ .-+|.+|..|...+.+..+
T Consensus 235 ~k~~fVaGged------~~~~kfDy~TgeEi~~--~nk----------gh~gpVhcVrFSPdGE~yAsGSEDGTirlW 294 (334)
T KOG0278|consen 235 KKEFFVAGGED------FKVYKFDYNTGEEIGS--YNK----------GHFGPVHCVRFSPDGELYASGSEDGTIRLW 294 (334)
T ss_pred CCceEEecCcc------eEEEEEeccCCceeee--ccc----------CCCCceEEEEECCCCceeeccCCCceEEEE
Confidence 55799999854 3467788887753222 111 12222222 2389999999776666544
No 235
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=20.56 E-value=4.2e+02 Score=25.68 Aligned_cols=64 Identities=13% Similarity=0.208 Sum_probs=40.2
Q ss_pred CCEEEEEecCCCeEEEEECCCCcEEEeccCCCccCCCCcceEEEEEe--CCEEEEEcCcCCCCCceEEEEEeeCCC
Q 012755 355 NNQLYSADQATNVVKKYNKTNNSWTVVKRLPVRANSFNGWGLAFKAC--GNSLLVIGGHRELQGEIIVLHSWDPTD 428 (457)
Q Consensus 355 ~g~ly~~gg~~~~v~~Yd~~~~~W~~v~~~p~~~~~~~~~~~~~~~~--~g~lyv~GG~~~~~~~~~~v~~y~~~~ 428 (457)
.|...++|-....+..||.++-+-..-.. |.... . -++.-+.+ .++|||.|..++ .|.+||-.+
T Consensus 227 sGefllvgTdHp~~rlYdv~T~Qcfvsan-Pd~qh--t-~ai~~V~Ys~t~~lYvTaSkDG------~IklwDGVS 292 (430)
T KOG0640|consen 227 SGEFLLVGTDHPTLRLYDVNTYQCFVSAN-PDDQH--T-GAITQVRYSSTGSLYVTASKDG------AIKLWDGVS 292 (430)
T ss_pred CCceEEEecCCCceeEEeccceeEeeecC-ccccc--c-cceeEEEecCCccEEEEeccCC------cEEeecccc
Confidence 56777788778899999999866543332 43321 1 12223333 589999998775 356666554
No 236
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=20.41 E-value=51 Score=25.09 Aligned_cols=26 Identities=8% Similarity=0.086 Sum_probs=23.1
Q ss_pred eEeeecCcEEEecccccccchHHHHH
Q 012755 22 VMFDFQNHVITDVSKHFGQDLKFVKE 47 (457)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (457)
+-+.+.||.++|-.+-+++++|+|..
T Consensus 21 vsvT~D~efVvhdirVi~G~~GlfVA 46 (95)
T COG2088 21 VSVTLDNEFVVHDIRVIEGNNGLFVA 46 (95)
T ss_pred EEEEecceEEEeccEEEeCCcceEEE
Confidence 45678999999999999999999865
Done!