Query 012756
Match_columns 457
No_of_seqs 212 out of 399
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 05:59:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012756.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012756hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03162 golden-2 like transcr 100.0 1.8E-70 3.9E-75 549.3 22.5 239 209-450 229-524 (526)
2 TIGR01557 myb_SHAQKYF myb-like 99.8 7.7E-21 1.7E-25 147.6 5.7 55 215-269 1-56 (57)
3 PF00249 Myb_DNA-binding: Myb- 97.3 0.00041 8.9E-09 51.1 4.4 48 217-267 1-48 (48)
4 PLN03029 type-a response regul 95.7 0.0077 1.7E-07 56.3 2.8 34 2-35 118-151 (222)
5 smart00426 TEA TEA domain. 92.7 0.15 3.3E-06 42.2 3.8 46 219-265 5-67 (68)
6 COG4566 TtrR Response regulato 92.6 0.12 2.6E-06 50.2 3.7 31 2-32 92-122 (202)
7 COG4565 CitB Response regulato 90.6 0.21 4.5E-06 49.3 3.0 33 3-35 91-123 (224)
8 COG0745 OmpR Response regulato 90.2 0.13 2.8E-06 49.4 1.2 33 2-34 88-120 (229)
9 COG4753 Response regulator con 89.3 0.24 5.2E-06 53.3 2.4 36 2-37 92-127 (475)
10 COG4567 Response regulator con 87.6 0.28 6E-06 46.9 1.5 22 2-23 97-118 (182)
11 PRK09581 pleD response regulat 87.3 0.57 1.2E-05 45.6 3.4 30 2-31 244-273 (457)
12 PRK13856 two-component respons 85.6 0.49 1.1E-05 43.0 1.9 32 2-33 89-120 (241)
13 COG2204 AtoC Response regulato 85.0 0.53 1.1E-05 50.6 2.0 33 2-34 92-124 (464)
14 PRK10766 DNA-binding transcrip 84.5 0.64 1.4E-05 40.9 2.1 31 2-32 89-119 (221)
15 PRK11173 two-component respons 84.1 0.55 1.2E-05 42.3 1.5 33 2-34 90-122 (237)
16 PRK10643 DNA-binding transcrip 84.0 0.55 1.2E-05 40.8 1.4 32 2-33 88-119 (222)
17 TIGR03787 marine_sort_RR prote 82.5 0.71 1.5E-05 40.8 1.5 32 2-33 90-121 (227)
18 PRK10529 DNA-binding transcrip 80.8 0.93 2E-05 40.0 1.7 31 2-32 88-118 (225)
19 PRK10336 DNA-binding transcrip 80.4 0.8 1.7E-05 39.8 1.1 31 2-32 88-118 (219)
20 PRK13435 response regulator; P 79.7 1.1 2.5E-05 37.4 1.8 33 3-35 92-124 (145)
21 smart00717 SANT SANT SWI3, AD 79.6 4.8 0.0001 27.6 4.6 43 218-265 2-45 (49)
22 PRK10161 transcriptional regul 79.5 0.91 2E-05 40.3 1.2 31 2-32 92-122 (229)
23 KOG1601 GATA-4/5/6 transcripti 79.1 0.21 4.5E-06 44.7 -3.0 35 1-35 108-142 (340)
24 PRK14084 two-component respons 78.2 1.3 2.9E-05 40.4 1.9 32 2-33 88-119 (246)
25 PRK10693 response regulator of 77.8 1.1 2.3E-05 44.1 1.2 32 2-33 61-93 (303)
26 PRK10816 DNA-binding transcrip 77.8 1.3 2.9E-05 39.1 1.7 31 2-32 88-118 (223)
27 PRK09468 ompR osmolarity respo 77.2 1.2 2.5E-05 40.0 1.2 31 2-32 93-123 (239)
28 PLN03162 golden-2 like transcr 76.1 7.4 0.00016 41.8 6.8 100 329-436 358-483 (526)
29 PRK09836 DNA-binding transcrip 75.2 1.6 3.5E-05 38.7 1.5 31 2-32 88-118 (227)
30 cd00167 SANT 'SWI3, ADA2, N-Co 74.7 7.6 0.00016 26.3 4.5 43 219-266 1-44 (45)
31 PRK11697 putative two-componen 74.3 1.7 3.7E-05 39.3 1.4 31 2-32 88-118 (238)
32 PRK10046 dpiA two-component re 74.1 2 4.3E-05 39.5 1.8 32 2-33 94-125 (225)
33 KOG1924 RhoA GTPase effector D 73.9 21 0.00045 41.6 9.9 28 423-450 610-637 (1102)
34 TIGR02154 PhoB phosphate regul 73.8 1.6 3.4E-05 38.0 1.1 31 2-32 92-122 (226)
35 PF01285 TEA: TEA/ATTS domain 73.7 3.3 7.1E-05 44.2 3.6 52 214-266 46-112 (431)
36 TIGR02875 spore_0_A sporulatio 72.4 1.8 3.9E-05 40.2 1.2 31 2-32 94-124 (262)
37 PRK10360 DNA-binding transcrip 72.1 1.7 3.7E-05 37.4 0.9 30 2-31 88-117 (196)
38 COG3437 Response regulator con 70.8 4.5 9.8E-05 42.6 3.7 34 2-35 105-139 (360)
39 PRK11517 transcriptional regul 70.7 1.9 4.1E-05 37.7 0.9 29 2-30 87-115 (223)
40 CHL00148 orf27 Ycf27; Reviewed 69.9 2.8 6.2E-05 37.1 1.8 29 2-30 93-121 (240)
41 TIGR01387 cztR_silR_copR heavy 69.9 2 4.4E-05 37.2 0.9 30 2-31 86-115 (218)
42 PRK10955 DNA-binding transcrip 69.8 2.3 5E-05 37.5 1.2 30 2-31 87-116 (232)
43 PRK10701 DNA-binding transcrip 69.0 2.7 5.9E-05 37.8 1.5 30 2-31 88-117 (240)
44 TIGR02915 PEP_resp_reg putativ 68.8 2.3 5E-05 43.1 1.2 30 2-31 89-118 (445)
45 PRK11083 DNA-binding response 68.4 2.5 5.4E-05 36.9 1.1 29 2-30 91-119 (228)
46 PRK10430 DNA-binding transcrip 65.8 4 8.8E-05 37.7 2.0 32 2-33 93-124 (239)
47 PRK10840 transcriptional regul 65.7 2.8 6.1E-05 37.9 0.9 28 2-29 96-123 (216)
48 PRK15479 transcriptional regul 65.6 3.8 8.2E-05 35.6 1.7 31 2-32 88-118 (221)
49 PRK09935 transcriptional regul 62.0 3.7 8E-05 35.4 0.9 28 2-29 93-120 (210)
50 PRK10710 DNA-binding transcrip 61.8 4.9 0.00011 35.6 1.7 30 2-31 97-126 (240)
51 PRK10365 transcriptional regul 61.2 8 0.00017 38.9 3.3 32 2-33 93-124 (441)
52 PRK09958 DNA-binding transcrip 58.0 5.4 0.00012 34.5 1.3 29 2-30 89-117 (204)
53 TIGR01818 ntrC nitrogen regula 55.4 8 0.00017 39.4 2.2 31 2-32 86-116 (463)
54 PRK15115 response regulator Gl 55.4 9.4 0.0002 38.8 2.7 31 2-32 93-123 (444)
55 PRK10403 transcriptional regul 54.5 5 0.00011 34.3 0.5 29 3-31 97-125 (215)
56 PRK09581 pleD response regulat 53.2 9.3 0.0002 37.3 2.2 30 2-31 92-121 (457)
57 PRK10923 glnG nitrogen regulat 52.0 8.7 0.00019 39.4 1.8 31 2-32 91-121 (469)
58 TIGR03815 CpaE_hom_Actino heli 51.9 8 0.00017 38.2 1.5 28 2-29 58-85 (322)
59 PF07830 PP2C_C: Protein serin 50.1 24 0.00051 30.2 3.8 39 407-450 27-65 (81)
60 COG3706 PleD Response regulato 49.9 5.9 0.00013 42.5 0.3 23 1-23 221-243 (435)
61 PRK09390 fixJ response regulat 45.6 22 0.00048 29.9 3.0 28 2-29 91-118 (202)
62 PF12776 Myb_DNA-bind_3: Myb/S 43.7 25 0.00054 28.5 2.9 50 219-268 1-63 (96)
63 KOG0485 Transcription factor N 43.4 1.7E+02 0.0037 29.9 9.1 26 253-278 142-167 (268)
64 PRK11107 hybrid sensory histid 42.0 10 0.00022 41.4 0.6 24 2-25 757-780 (919)
65 PRK11361 acetoacetate metaboli 41.7 9.3 0.0002 38.8 0.2 29 2-30 92-120 (457)
66 KOG3841 TEF-1 and related tran 41.6 18 0.00039 38.9 2.3 53 217-270 76-145 (455)
67 PRK11466 hybrid sensory histid 40.4 16 0.00035 40.3 1.8 29 3-31 771-799 (914)
68 PRK09483 response regulator; P 40.4 15 0.00032 32.2 1.2 24 2-25 91-114 (217)
69 PRK15347 two component system 39.9 16 0.00034 40.1 1.6 28 2-29 782-809 (921)
70 PF11888 DUF3408: Protein of u 37.9 44 0.00095 30.1 3.8 50 218-276 83-132 (136)
71 PRK12555 chemotaxis-specific m 36.6 14 0.0003 36.6 0.5 16 2-17 91-106 (337)
72 PRK15369 two component system 34.2 22 0.00047 30.0 1.3 26 3-28 94-119 (211)
73 TIGR02956 TMAO_torS TMAO reduc 32.9 22 0.00048 39.3 1.4 29 2-30 793-821 (968)
74 PRK12515 RNA polymerase sigma 31.4 48 0.001 29.9 3.1 57 223-282 120-188 (189)
75 PRK10651 transcriptional regul 30.5 23 0.00051 30.4 0.9 28 2-29 96-123 (216)
76 PRK09642 RNA polymerase sigma 30.2 61 0.0013 28.2 3.4 51 224-277 96-157 (160)
77 PRK11091 aerobic respiration c 30.1 27 0.00058 38.1 1.5 28 3-30 616-643 (779)
78 PRK09959 hybrid sensory histid 29.7 19 0.00042 41.1 0.3 24 2-25 1046-1069(1197)
79 cd03412 CbiK_N Anaerobic cobal 26.4 49 0.0011 29.2 2.2 22 426-447 52-73 (127)
80 PRK00742 chemotaxis-specific m 26.1 31 0.00067 34.3 1.0 17 2-18 94-110 (354)
81 COG3360 Uncharacterized conser 25.8 31 0.00067 29.2 0.8 15 404-418 15-29 (71)
82 cd03409 Chelatase_Class_II Cla 25.6 71 0.0015 25.7 2.8 20 428-447 43-62 (101)
83 KOG0850 Transcription factor D 25.4 68 0.0015 32.6 3.2 60 211-276 120-183 (245)
84 PRK11475 DNA-binding transcrip 24.4 33 0.00071 32.5 0.8 24 3-26 85-109 (207)
85 cd06171 Sigma70_r4 Sigma70, re 23.8 1.1E+02 0.0024 20.7 3.2 30 238-270 25-54 (55)
86 PF01325 Fe_dep_repress: Iron 22.6 28 0.00061 27.4 -0.0 20 425-444 32-51 (60)
87 PF13921 Myb_DNA-bind_6: Myb-l 22.0 1.7E+02 0.0037 21.9 4.1 41 220-265 1-41 (60)
88 KOG2236 Uncharacterized conser 21.5 3.2E+02 0.0069 30.4 7.4 113 259-390 367-482 (483)
89 PRK11923 algU RNA polymerase s 20.5 97 0.0021 27.8 2.9 49 223-274 127-186 (193)
90 TIGR02989 Sig-70_gvs1 RNA poly 20.4 1.6E+02 0.0035 25.2 4.2 47 222-271 99-156 (159)
91 PRK00923 sirohydrochlorin coba 20.2 65 0.0014 27.7 1.7 29 419-447 32-63 (126)
92 TIGR02894 DNA_bind_RsfA transc 20.2 59 0.0013 31.2 1.5 49 215-269 46-95 (161)
No 1
>PLN03162 golden-2 like transcription factor; Provisional
Probab=100.00 E-value=1.8e-70 Score=549.29 Aligned_cols=239 Identities=44% Similarity=0.745 Sum_probs=186.3
Q ss_pred CcccCCCCcccCCHHHHHHHHHHHHHhCCCCCChhHHHhhcCCCCCcHHHHHhhhchhhhhhcccCCccc-cccCchhhh
Q 012756 209 NKANRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPKED-DRKWPHARD 287 (457)
Q Consensus 209 ~~~~~kK~Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl~~k~~l~~~~-~~~w~~~R~ 287 (457)
...++||+||+||+|||++||+||++||+++||||+||++|+|+||||+||||||||||+++++++.+++ +.+|+++|.
T Consensus 229 ~~~g~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~~rEaEa~swt~kr~ 308 (526)
T PLN03162 229 AAPGKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLAAREAEAASWTHRRA 308 (526)
T ss_pred cCCCCCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccccchhhhhccchhhhh
Confidence 4467899999999999999999999999999999999999999999999999999999999999999998 589999887
Q ss_pred hhhc-----ccCCC----CCCcCCCCC-------------CCCCCCCCCCCCcccCCCCCCCccccccCCCC---CCCCC
Q 012756 288 QMLR-----NYYPH----KPIMAFPPY-------------HSNHLVPTGPVYPVWGAPSNHLAAVQMWAPPG---YPPWQ 342 (457)
Q Consensus 288 ~~~~-----n~~~~----~p~~~f~p~-------------~~~h~~p~~~~~~vwG~p~~~~~~~~~w~~~~---~~~w~ 342 (457)
.... ++... .| |+||+. .+.|+.|...++||||||+++++.||||++.. .++|+
T Consensus 309 ~~~~P~~rs~~~~g~p~~~p-igfP~~~P~P~~~~~~~P~~~~~Hhpf~rPLhVWGhPtvd~s~v~mWp~h~~~~p~pW~ 387 (526)
T PLN03162 309 YTQAPWPRSSRRDGLPYLVP-IHTPHIQPRPSMAMAMQPQLQTPHHPISTPLKVWGYPTVDHSNVHMWQQPAVATPSYWQ 387 (526)
T ss_pred hccCCcccCCCCCCCccccc-cCCCCCCCCCCccCCCCCCcccccccccccceeccCCCCCCcccccccccccCCCCCCC
Confidence 4431 22211 12 455532 22344455557899999999999999999743 56799
Q ss_pred CCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCC---CCCCC------------------C--
Q 012756 343 QAE--SWNWKPYPGMPADAWGCPVMPLPNGPYSSF------PQGASGYHNS---GVDDN------------------S-- 391 (457)
Q Consensus 343 p~~--~w~~~py~~~~~~awG~p~~p~~~~p~~~~------p~~~~g~~~~---~~~~~------------------~-- 391 (457)
+.+ ||| |||++..|-. |+||||.|...+... |+-.|+|..+ |+.|. .
T Consensus 388 ~~Dp~fW~-h~~~~~~a~~-gtpc~p~pm~Rfp~ppv~~G~p~~~P~~p~~~~yy~~d~~a~~~~~~~~~~~~~~~~~~~ 465 (526)
T PLN03162 388 AADGSYWQ-HPATGYDAFS-ARACYPHPMQRVPLGTTHAGLPIMAPGFPDESCYYGDDMLAASMYLCNQSYDSEIGRAAG 465 (526)
T ss_pred CCCcchhh-cccccCcccc-CCcccCchhhhCCCCCCCCCCccccCCCCchhhcccccchhhcccccccccccccccccc
Confidence 976 664 4898765433 999999775321111 2222233221 11110 1
Q ss_pred CCCCCCCcCCCCcHHHHHHHHHHHHhCCCCCCCCCCCCCChhHHHHHHHHcCCCCCCCC
Q 012756 392 YAMPQNSVDLHPAEEVIDKVVKEAISKPWLPLPLGLKPPSADSVLAELSRQGISTIPPR 450 (457)
Q Consensus 392 ~~~p~~~~d~hPs~E~iDaai~dvl~kPwlPLPlGLKpPs~dsVm~EL~rQGi~~iPp~ 450 (457)
....++++++|||||+|||||||||+||||||||||||||+||||+|||||||++|||+
T Consensus 466 ~~~~~~~~~~hpSkEsiDAAIgdvLskPWlPlPLGLKpPSldsVm~ELqRQGi~~vpp~ 524 (526)
T PLN03162 466 VAACSKPIETHLSKEVLDAAIGEALANPWTPPPLGLKPPSMEGVIAELQRQGINTVPPS 524 (526)
T ss_pred hhhcccccccCccHHHHHHHHHHHhhCCCCCCCcCCCCccHHHHHHHHHHcccCCCCCC
Confidence 11245899999999999999999999999999999999999999999999999999996
No 2
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.82 E-value=7.7e-21 Score=147.64 Aligned_cols=55 Identities=64% Similarity=0.988 Sum_probs=52.9
Q ss_pred CCcccCCHHHHHHHHHHHHHhCC-CCCChhHHHhhcCCCCCcHHHHHhhhchhhhh
Q 012756 215 KMKVDWTPELHKKFVQAVEQLGV-DQAIPSRILELMKVEGLTRHNVASHLQKYRMH 269 (457)
Q Consensus 215 K~Rl~WT~ELH~rFV~AV~qLG~-dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl~ 269 (457)
|+|++||+|+|++|++||++||. +.||||.|+++|++++||+.||+|||||||+.
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k 56 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK 56 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 68999999999999999999995 99999999999999999999999999999975
No 3
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.27 E-value=0.00041 Score=51.05 Aligned_cols=48 Identities=29% Similarity=0.383 Sum_probs=41.4
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCChhHHHhhcCCCCCcHHHHHhhhchhh
Q 012756 217 KVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYR 267 (457)
Q Consensus 217 Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKYR 267 (457)
|-.||+|-+.+|++||.++|.+ .-+.|.+.|+ .+-|..++++|.++|+
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKD--NWKKIAKRMP-GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTT--HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCc--HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence 4689999999999999999965 4589999997 6899999999999985
No 4
>PLN03029 type-a response regulator protein; Provisional
Probab=95.67 E-value=0.0077 Score=56.33 Aligned_cols=34 Identities=29% Similarity=0.535 Sum_probs=31.0
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHHHHh
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN 35 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk~~~ 35 (457)
.+|+..||.|||.||++..+|..++.|+.+.+..
T Consensus 118 ~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~~~~~ 151 (222)
T PLN03029 118 TRCLEEGAEEFFLKPVQLSDLNRLKPHMMKTKSK 151 (222)
T ss_pred HHHHHhCchheEECCCCHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999888754
No 5
>smart00426 TEA TEA domain.
Probab=92.67 E-value=0.15 Score=42.21 Aligned_cols=46 Identities=22% Similarity=0.280 Sum_probs=30.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCChhHH-----------------HhhcCCCCCcHHHHHhhhch
Q 012756 219 DWTPELHKKFVQAVEQLGVDQAIPSRI-----------------LELMKVEGLTRHNVASHLQK 265 (457)
Q Consensus 219 ~WT~ELH~rFV~AV~qLG~dkAtPK~I-----------------LelM~V~gLTr~~VkSHLQK 265 (457)
+|.++|-..|++|+..+=.....+-+| ...-| .--|+.||.||||.
T Consensus 5 vWp~~lE~Af~~aL~~~~~~g~~kik~~~r~k~~gRNelIs~YI~~~tG-k~Rt~KQVsShIQv 67 (68)
T smart00426 5 VWSPDIEQAFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTG-KTRTRKQVSSHIQV 67 (68)
T ss_pred cCcHHHHHHHHHHHHHcCccCcccchhhhcCcccchhHHHHHHHHHHhC-Cccchhhhcchhee
Confidence 799999999999999875211111112 21111 23589999999995
No 6
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=92.61 E-value=0.12 Score=50.20 Aligned_cols=31 Identities=32% Similarity=0.617 Sum_probs=24.7
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 32 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk 32 (457)
.++++.||+|||.||+++..|..-=+.-.++
T Consensus 92 V~AmK~GAvDFLeKP~~~q~Lldav~~Al~~ 122 (202)
T COG4566 92 VQAMKAGAVDFLEKPFSEQDLLDAVERALAR 122 (202)
T ss_pred HHHHHcchhhHHhCCCchHHHHHHHHHHHHH
Confidence 4789999999999999999987655444433
No 7
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=90.57 E-value=0.21 Score=49.29 Aligned_cols=33 Identities=21% Similarity=0.449 Sum_probs=28.2
Q ss_pred hhhhchhhHHhhcCCCHHHHHHHHHHHHHHHHh
Q 012756 3 KCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN 35 (457)
Q Consensus 3 kci~~GA~DyL~KPlr~~elkniWQHV~Rk~~~ 35 (457)
.+++.||+|||+||+..+-|..-=+.-.|++..
T Consensus 91 ~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~~ 123 (224)
T COG4565 91 EALRYGVVDYLIKPFTFERLQQALTRYRQKRHA 123 (224)
T ss_pred HHHhcCchhheecceeHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999887777666654
No 8
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=90.20 E-value=0.13 Score=49.36 Aligned_cols=33 Identities=21% Similarity=0.363 Sum_probs=27.5
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 34 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk~~ 34 (457)
+.++..||.|||.||+..+||..==+-+.||..
T Consensus 88 v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~ 120 (229)
T COG0745 88 VLGLEAGADDYLTKPFSPRELLARLRALLRRNA 120 (229)
T ss_pred HHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCc
Confidence 578999999999999999999876666666654
No 9
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=89.26 E-value=0.24 Score=53.27 Aligned_cols=36 Identities=22% Similarity=0.430 Sum_probs=31.7
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHHHHhhC
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAG 37 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk~~~~~ 37 (457)
-+||++|+.|||+||+.+.||...=.+|..+--...
T Consensus 92 k~Am~lGV~dYLLKP~~k~eL~~~L~ki~~kl~~~~ 127 (475)
T COG4753 92 KKAMKLGVKDYLLKPVDKAELEEALKKIIGKLEEQQ 127 (475)
T ss_pred HHHHhcCchhheeCcCCHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999988865433
No 10
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=87.62 E-value=0.28 Score=46.87 Aligned_cols=22 Identities=32% Similarity=0.699 Sum_probs=19.3
Q ss_pred hhhhhchhhHHhhcCCCHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLR 23 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elk 23 (457)
+.+|++||||||-||-.-+.|-
T Consensus 97 V~AvKlGA~~YLaKPAdaDdi~ 118 (182)
T COG4567 97 VEAVKLGACDYLAKPADADDIL 118 (182)
T ss_pred HHHHHhhhhhhcCCCCChHHHH
Confidence 4689999999999999888764
No 11
>PRK09581 pleD response regulator PleD; Reviewed
Probab=87.30 E-value=0.57 Score=45.64 Aligned_cols=30 Identities=20% Similarity=0.501 Sum_probs=24.5
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVH 31 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~R 31 (457)
.+|+..||+|||.||+..++|........+
T Consensus 244 ~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~ 273 (457)
T PRK09581 244 VKALELGVNDYLMRPIDKNELLARVRTQIR 273 (457)
T ss_pred HHHHHccchhhhhCCCcHHHHHHHHHHHHH
Confidence 478999999999999999999865554333
No 12
>PRK13856 two-component response regulator VirG; Provisional
Probab=85.62 E-value=0.49 Score=42.97 Aligned_cols=32 Identities=19% Similarity=0.390 Sum_probs=27.3
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 33 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk~ 33 (457)
++++..||.|||.||++..+|....+.++|+.
T Consensus 89 ~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~~ 120 (241)
T PRK13856 89 VVALELGATDFIAKPFGTREFLARIRVALRVR 120 (241)
T ss_pred HHHHhcCcCeEEeCCCCHHHHHHHHHHHHhhc
Confidence 46889999999999999999988777777653
No 13
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=84.95 E-value=0.53 Score=50.56 Aligned_cols=33 Identities=27% Similarity=0.509 Sum_probs=28.6
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 34 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk~~ 34 (457)
..|++.||.|||.||+..++|..+=.+.+.++.
T Consensus 92 V~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~ 124 (464)
T COG2204 92 VEALRLGAFDFLEKPFDLDRLLAIVERALELRE 124 (464)
T ss_pred HHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhh
Confidence 478999999999999999999998877776544
No 14
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=84.49 E-value=0.64 Score=40.91 Aligned_cols=31 Identities=19% Similarity=0.388 Sum_probs=25.8
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 32 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk 32 (457)
.+++..||.|||.||+..++|...=+.++||
T Consensus 89 ~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r 119 (221)
T PRK10766 89 IVGLEMGADDYVTKPLELRELLVRVKNLLWR 119 (221)
T ss_pred HHHHHcCCCcEEeCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999987766666665
No 15
>PRK11173 two-component response regulator; Provisional
Probab=84.07 E-value=0.55 Score=42.30 Aligned_cols=33 Identities=15% Similarity=0.413 Sum_probs=27.7
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 34 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk~~ 34 (457)
.+++..||.|||.||+..++|...-..++|+..
T Consensus 90 ~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r~~ 122 (237)
T PRK11173 90 ILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 (237)
T ss_pred HHHHHCCCCEEEECCCCHHHHHHHHHHHHhccc
Confidence 357899999999999999999877777777643
No 16
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=83.97 E-value=0.55 Score=40.79 Aligned_cols=32 Identities=19% Similarity=0.447 Sum_probs=26.7
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 33 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk~ 33 (457)
++++..||.|||.||+..++|...-+.+.++.
T Consensus 88 ~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 119 (222)
T PRK10643 88 VAGLDVGADDYLVKPFALEELHARIRALIRRH 119 (222)
T ss_pred HHHHhcCCCeEEeCCCCHHHHHHHHHHHHhhh
Confidence 46789999999999999999988777666553
No 17
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=82.46 E-value=0.71 Score=40.81 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=27.4
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 33 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk~ 33 (457)
.+++..||.||+.||+..++|...-+.++|+.
T Consensus 90 ~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 121 (227)
T TIGR03787 90 VSGLRLGADDYLTKDISLPHLLARITALFRRA 121 (227)
T ss_pred HHHHhcCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 46789999999999999999988877777654
No 18
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=80.82 E-value=0.93 Score=40.00 Aligned_cols=31 Identities=19% Similarity=0.435 Sum_probs=24.3
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 32 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk 32 (457)
.+++..||.|||.||++..+|...=+.+.|+
T Consensus 88 ~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~ 118 (225)
T PRK10529 88 IAALDAGADDYLSKPFGIGELQARLRVALRR 118 (225)
T ss_pred HHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 4688999999999999999987654444443
No 19
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=80.35 E-value=0.8 Score=39.83 Aligned_cols=31 Identities=19% Similarity=0.397 Sum_probs=25.9
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 32 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk 32 (457)
.+++..||.||+.||+..++|...-+.+.|+
T Consensus 88 ~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 118 (219)
T PRK10336 88 VEGLRLGADDYLCKPFALIEVAARLEALMRR 118 (219)
T ss_pred HHHHhCCCCeEEECCCCHHHHHHHHHHHHhc
Confidence 4678999999999999999998776666554
No 20
>PRK13435 response regulator; Provisional
Probab=79.75 E-value=1.1 Score=37.43 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=27.8
Q ss_pred hhhhchhhHHhhcCCCHHHHHHHHHHHHHHHHh
Q 012756 3 KCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN 35 (457)
Q Consensus 3 kci~~GA~DyL~KPlr~~elkniWQHV~Rk~~~ 35 (457)
+++..||.+||.||+...+|...=+|++++..+
T Consensus 92 ~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~~ 124 (145)
T PRK13435 92 PHDFAGALGVIAKPYSPRGVARALSYLSARRVG 124 (145)
T ss_pred HHHhcCcceeEeCCCCHHHHHHHHHHHHhcCcc
Confidence 456789999999999999999988888766554
No 21
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=79.56 E-value=4.8 Score=27.57 Aligned_cols=43 Identities=19% Similarity=0.360 Sum_probs=34.2
Q ss_pred ccCCHHHHHHHHHHHHHhC-CCCCChhHHHhhcCCCCCcHHHHHhhhch
Q 012756 218 VDWTPELHKKFVQAVEQLG-VDQAIPSRILELMKVEGLTRHNVASHLQK 265 (457)
Q Consensus 218 l~WT~ELH~rFV~AV~qLG-~dkAtPK~ILelM~V~gLTr~~VkSHLQK 265 (457)
-.||++=...|+.++.++| .+- +.|.+.|+ +-|..+|+.+...
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w---~~Ia~~~~--~rt~~~~~~~~~~ 45 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNW---EKIAKELP--GRTAEQCRERWNN 45 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCH---HHHHHHcC--CCCHHHHHHHHHH
Confidence 4699999999999999999 554 67777775 7788888776443
No 22
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=79.53 E-value=0.91 Score=40.30 Aligned_cols=31 Identities=23% Similarity=0.465 Sum_probs=25.9
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 32 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk 32 (457)
.+++..||.|||.||+..++|...=+.++|+
T Consensus 92 ~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 122 (229)
T PRK10161 92 VRGLETGADDYITKPFSPKELVARIKAVMRR 122 (229)
T ss_pred HHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 4688999999999999999987766666654
No 23
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=79.12 E-value=0.21 Score=44.67 Aligned_cols=35 Identities=26% Similarity=0.226 Sum_probs=30.9
Q ss_pred ChhhhhchhhHHhhcCCCHHHHHHHHHHHHHHHHh
Q 012756 1 MMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN 35 (457)
Q Consensus 1 vmkci~~GA~DyL~KPlr~~elkniWQHV~Rk~~~ 35 (457)
++.++..||++|+.||++.++++++|+|+++....
T Consensus 108 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 142 (340)
T KOG1601|consen 108 SSSSVSPSASLELTKPDRKNRLKRSRQHVRVKDED 142 (340)
T ss_pred hhcccCCcccccccccccCCCcccCCccccccccc
Confidence 36788889999999999999999999999987554
No 24
>PRK14084 two-component response regulator; Provisional
Probab=78.25 E-value=1.3 Score=40.42 Aligned_cols=32 Identities=19% Similarity=0.429 Sum_probs=27.0
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 33 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk~ 33 (457)
++++..||.|||.||+..++|...-+++.++.
T Consensus 88 ~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~~ 119 (246)
T PRK14084 88 VKAFELNATDYILKPFEQKRIEQAVNKVRATK 119 (246)
T ss_pred HHHHhcCCcEEEECCCCHHHHHHHHHHHHHhh
Confidence 46788999999999999999988887776543
No 25
>PRK10693 response regulator of RpoS; Provisional
Probab=77.84 E-value=1.1 Score=44.09 Aligned_cols=32 Identities=25% Similarity=0.421 Sum_probs=27.3
Q ss_pred hhhhhchhhHHhhcCCC-HHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLS-EDKLRNLWQHVVHKA 33 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr-~~elkniWQHV~Rk~ 33 (457)
.+|+..||.||+.||++ .++|+...+++.++.
T Consensus 61 ~~al~~Ga~dyl~KP~~~~~~L~~~i~~~l~~~ 93 (303)
T PRK10693 61 AKALRLGVQDVLLKPVKDLNRLREMVFACLYPS 93 (303)
T ss_pred HHHHHCCCcEEEECCCCcHHHHHHHHHHHhhhh
Confidence 57899999999999995 899988888777655
No 26
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=77.81 E-value=1.3 Score=39.08 Aligned_cols=31 Identities=16% Similarity=0.431 Sum_probs=24.3
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 32 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk 32 (457)
++++..||.|||.||+...+|...=+.+.|+
T Consensus 88 ~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~ 118 (223)
T PRK10816 88 VEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (223)
T ss_pred HHHHHcCCCeeEeCCCCHHHHHHHHHHHHhc
Confidence 4678899999999999999987655544443
No 27
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=77.22 E-value=1.2 Score=40.01 Aligned_cols=31 Identities=23% Similarity=0.455 Sum_probs=25.4
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 32 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk 32 (457)
++++..||.|||.||++.++|...=+.++|+
T Consensus 93 ~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r 123 (239)
T PRK09468 93 IVGLEIGADDYLPKPFNPRELLARIRAVLRR 123 (239)
T ss_pred HHHHhcCCCeEEECCCCHHHHHHHHHHHhcc
Confidence 4678899999999999999987766666554
No 28
>PLN03162 golden-2 like transcription factor; Provisional
Probab=76.09 E-value=7.4 Score=41.75 Aligned_cols=100 Identities=14% Similarity=0.226 Sum_probs=58.7
Q ss_pred cccccCC-----CCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCC----CCCC
Q 012756 329 AVQMWAP-----PGYPPWQQA-----ESWNWKPYPGMPADAWGCPVMPL---PNGPYSSFPQGASGYHNSGV----DDNS 391 (457)
Q Consensus 329 ~~~~w~~-----~~~~~w~p~-----~~w~~~py~~~~~~awG~p~~p~---~~~p~~~~p~~~~g~~~~~~----~~~~ 391 (457)
..|+|+. +..+.|+-+ .+|.-- -..-|-.|++.- ..|||.+.| +.+|..+.+ .-|.
T Consensus 358 PLhVWGhPtvd~s~v~mWp~h~~~~p~pW~~~-----Dp~fW~h~~~~~~a~~gtpc~p~p--m~Rfp~ppv~~G~p~~~ 430 (526)
T PLN03162 358 PLKVWGYPTVDHSNVHMWQQPAVATPSYWQAA-----DGSYWQHPATGYDAFSARACYPHP--MQRVPLGTTHAGLPIMA 430 (526)
T ss_pred cceeccCCCCCCcccccccccccCCCCCCCCC-----CcchhhcccccCccccCCcccCch--hhhCCCCCCCCCCcccc
Confidence 6799995 445788643 244311 111244443331 267886554 467766544 2233
Q ss_pred CCCCCCC---------cCCCCcHHHHHHHHHHHHhCCCCCCCCCCCCCChhHHH
Q 012756 392 YAMPQNS---------VDLHPAEEVIDKVVKEAISKPWLPLPLGLKPPSADSVL 436 (457)
Q Consensus 392 ~~~p~~~---------~d~hPs~E~iDaai~dvl~kPwlPLPlGLKpPs~dsVm 436 (457)
.++|..+ +..++-+.+.|.-||..+--+-..+||-+-| |-++|=
T Consensus 431 P~~p~~~~yy~~d~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hp-SkEsiD 483 (526)
T PLN03162 431 PGFPDESCYYGDDMLAASMYLCNQSYDSEIGRAAGVAACSKPIETHL-SKEVLD 483 (526)
T ss_pred CCCCchhhcccccchhhcccccccccccccccccchhhcccccccCc-cHHHHH
Confidence 3333322 2335667889999999998888889998876 655553
No 29
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=75.17 E-value=1.6 Score=38.68 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=24.6
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 32 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk 32 (457)
.+++..||.||+.||++..+|...=+.++|+
T Consensus 88 ~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (227)
T PRK09836 88 VKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (227)
T ss_pred HHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 3678999999999999999987665555543
No 30
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=74.73 E-value=7.6 Score=26.29 Aligned_cols=43 Identities=21% Similarity=0.364 Sum_probs=34.0
Q ss_pred cCCHHHHHHHHHHHHHhC-CCCCChhHHHhhcCCCCCcHHHHHhhhchh
Q 012756 219 DWTPELHKKFVQAVEQLG-VDQAIPSRILELMKVEGLTRHNVASHLQKY 266 (457)
Q Consensus 219 ~WT~ELH~rFV~AV~qLG-~dkAtPK~ILelM~V~gLTr~~VkSHLQKY 266 (457)
.||.+=++.|+.++.++| .+ =+.|.+.|+ +-|..+|+.|.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~---w~~Ia~~~~--~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNN---WEKIAKELP--GRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCC---HHHHHhHcC--CCCHHHHHHHHHHh
Confidence 499999999999999999 44 367777774 47888888776543
No 31
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=74.32 E-value=1.7 Score=39.32 Aligned_cols=31 Identities=19% Similarity=0.387 Sum_probs=25.8
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 32 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk 32 (457)
.+++..||.|||.||+..++|...-+++.++
T Consensus 88 ~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (238)
T PRK11697 88 IKAFEEHAFDYLLKPIDPARLAKTLARLRQE 118 (238)
T ss_pred HHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 4678899999999999999998877776543
No 32
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=74.09 E-value=2 Score=39.54 Aligned_cols=32 Identities=16% Similarity=0.405 Sum_probs=26.5
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 33 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk~ 33 (457)
.+++..||.+||.||++.++|...=+++.+.+
T Consensus 94 ~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~ 125 (225)
T PRK10046 94 SEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 (225)
T ss_pred HHHHHcCccEEEECCcCHHHHHHHHHHHHHHH
Confidence 46889999999999999999987766665543
No 33
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=73.91 E-value=21 Score=41.64 Aligned_cols=28 Identities=39% Similarity=0.560 Sum_probs=16.4
Q ss_pred CCCCCCCCChhHHHHHHHHcCCCCCCCC
Q 012756 423 LPLGLKPPSADSVLAELSRQGISTIPPR 450 (457)
Q Consensus 423 LPlGLKpPs~dsVm~EL~rQGi~~iPp~ 450 (457)
||.||||=-+=.|=.-+.|-.-++|=|+
T Consensus 610 lP~gLkpKK~~k~e~~Mrr~nW~kI~p~ 637 (1102)
T KOG1924|consen 610 LPFGLKPKKVYKPEVPMRRFNWSKIVPR 637 (1102)
T ss_pred CCCCCCccccCCCCCccccCCccccCcc
Confidence 7889998555444444455555554443
No 34
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=73.85 E-value=1.6 Score=38.00 Aligned_cols=31 Identities=23% Similarity=0.457 Sum_probs=24.3
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 32 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk 32 (457)
.+++..||.||+.||+..++|...=..+.++
T Consensus 92 ~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 122 (226)
T TIGR02154 92 VRGLETGADDYITKPFSPRELLARIKAVLRR 122 (226)
T ss_pred HHHHhcCcceEEeCCCCHHHHHHHHHHHhcc
Confidence 4678999999999999999986655554443
No 35
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=73.72 E-value=3.3 Score=44.22 Aligned_cols=52 Identities=23% Similarity=0.277 Sum_probs=29.5
Q ss_pred CCCcccCCHHHHHHHHHHHHHhC-CCCCChh--------------HHHhhcCCCCCcHHHHHhhhchh
Q 012756 214 KKMKVDWTPELHKKFVQAVEQLG-VDQAIPS--------------RILELMKVEGLTRHNVASHLQKY 266 (457)
Q Consensus 214 kK~Rl~WT~ELH~rFV~AV~qLG-~dkAtPK--------------~ILelM~V~gLTr~~VkSHLQKY 266 (457)
++..-+|+++|...|++|+...- ....+-+ .|...-| .--|+.||.||+|..
T Consensus 46 ~~~~~vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~~yi~~~tg-~~rt~kqvsshiqvl 112 (431)
T PF01285_consen 46 GDGEGVWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELISDYIKLKTG-KTRTRKQVSSHIQVL 112 (431)
T ss_dssp GGGS--S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHHHHHHHHHS-----SHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHHHHHHHHhC-cccchhHHHHHHHHH
Confidence 46678999999999999998863 2221111 1221122 346999999999998
No 36
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=72.38 E-value=1.8 Score=40.25 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=26.0
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 32 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk 32 (457)
.+++..||.+||.||+..++|....++++++
T Consensus 94 ~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 94 QRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred HHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 3678999999999999999998877766543
No 37
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=72.11 E-value=1.7 Score=37.35 Aligned_cols=30 Identities=30% Similarity=0.316 Sum_probs=24.7
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVH 31 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~R 31 (457)
.+|+..||.+|+.||+..++|...-..+.+
T Consensus 88 ~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (196)
T PRK10360 88 EQALNAGARGFLSKRCSPDELIAAVHTVAT 117 (196)
T ss_pred HHHHHcCCcEEEECCCCHHHHHHHHHHHHc
Confidence 468899999999999999998877655554
No 38
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=70.84 E-value=4.5 Score=42.59 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=27.8
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHH-HHHHHHHHh
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLW-QHVVHKAFN 35 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniW-QHV~Rk~~~ 35 (457)
.+|+..||.|||.||++..+|+.-- .|+-.|+.+
T Consensus 105 ~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q~k~~~ 139 (360)
T COG3437 105 QRALEAGADDYLSKPISPKELVARVSSHLQLKRNE 139 (360)
T ss_pred HHHHHhhHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 4788899999999999999998877 677566443
No 39
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=70.74 E-value=1.9 Score=37.74 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=22.9
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVV 30 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~ 30 (457)
.+++..||.|||.||+...+|...=+.+.
T Consensus 87 ~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~ 115 (223)
T PRK11517 87 VRGLDSGANDYLVKPFSFSELLARVRAQL 115 (223)
T ss_pred HHHHhcCCCEEEECCCCHHHHHHHHHHHH
Confidence 46789999999999999998865544333
No 40
>CHL00148 orf27 Ycf27; Reviewed
Probab=69.88 E-value=2.8 Score=37.11 Aligned_cols=29 Identities=28% Similarity=0.505 Sum_probs=22.7
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVV 30 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~ 30 (457)
.+++..||.|||.||+..++|...=..+.
T Consensus 93 ~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~ 121 (240)
T CHL00148 93 ITGLELGADDYVVKPFSPKELEARIRSVL 121 (240)
T ss_pred HHHHHCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 46788999999999999999865444333
No 41
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=69.88 E-value=2 Score=37.18 Aligned_cols=30 Identities=30% Similarity=0.447 Sum_probs=23.3
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVH 31 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~R 31 (457)
.+++..||.||+.||+...+|...=..+.+
T Consensus 86 ~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 115 (218)
T TIGR01387 86 VKGLDLGADDYLVKPFSFSELLARVRTLLR 115 (218)
T ss_pred HHHHHcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 467899999999999999988655444433
No 42
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=69.78 E-value=2.3 Score=37.48 Aligned_cols=30 Identities=23% Similarity=0.473 Sum_probs=23.4
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVH 31 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~R 31 (457)
.+++..||.|||.||++..+|...=+.++|
T Consensus 87 ~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 116 (232)
T PRK10955 87 VLGLELGADDYLPKPFNDRELVARIRAILR 116 (232)
T ss_pred HHHHHcCCCEEEcCCCCHHHHHHHHHHHHh
Confidence 467899999999999999988655444443
No 43
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=68.95 E-value=2.7 Score=37.83 Aligned_cols=30 Identities=13% Similarity=0.251 Sum_probs=22.6
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVH 31 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~R 31 (457)
.+++..||.||+.||+...+|...=..++|
T Consensus 88 ~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~ 117 (240)
T PRK10701 88 ILALEMGACDYILKTTPPAVLLARLRLHLR 117 (240)
T ss_pred HHHHHcCCCEEEECCCCHHHHHHHHHHHHh
Confidence 367899999999999999987544333333
No 44
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=68.84 E-value=2.3 Score=43.08 Aligned_cols=30 Identities=37% Similarity=0.679 Sum_probs=24.6
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVH 31 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~R 31 (457)
.+|+..||.|||.||+..++|...=.++++
T Consensus 89 ~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~ 118 (445)
T TIGR02915 89 VKAIGLGAYDFYQKPIDPDVLKLIVDRAFH 118 (445)
T ss_pred HHHHHCCccEEEeCCCCHHHHHHHHhhhhh
Confidence 578999999999999999999765555443
No 45
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=68.38 E-value=2.5 Score=36.91 Aligned_cols=29 Identities=17% Similarity=0.431 Sum_probs=22.9
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVV 30 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~ 30 (457)
.+++..||.|||.||+...+|...=..+.
T Consensus 91 ~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~ 119 (228)
T PRK11083 91 LVGLEIGADDYVAKPFSPREVAARVRTIL 119 (228)
T ss_pred HHHhhcCCCeEEECCCCHHHHHHHHHHHH
Confidence 46789999999999999999865544443
No 46
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=65.80 E-value=4 Score=37.75 Aligned_cols=32 Identities=19% Similarity=0.379 Sum_probs=25.2
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 33 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk~ 33 (457)
.+++..||.+|+.||++.++|...=.++++++
T Consensus 93 ~~al~~Ga~~yl~Kp~~~~~l~~~i~~~~~~~ 124 (239)
T PRK10430 93 KDSLHYGVVDYLIKPFQASRFEEALTGWRQKK 124 (239)
T ss_pred HHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 46889999999999999999876555554443
No 47
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=65.66 E-value=2.8 Score=37.86 Aligned_cols=28 Identities=11% Similarity=0.055 Sum_probs=23.4
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHV 29 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV 29 (457)
.+++..||.+||.||.+.++|......|
T Consensus 96 ~~a~~~Ga~~yl~K~~~~~~l~~ai~~v 123 (216)
T PRK10840 96 SAVLDLDIEGIVLKQGAPTDLPKALAAL 123 (216)
T ss_pred HHHHHCCCeEEEECCCCHHHHHHHHHHH
Confidence 4678999999999999999988765543
No 48
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=65.56 E-value=3.8 Score=35.62 Aligned_cols=31 Identities=23% Similarity=0.499 Sum_probs=24.9
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 32 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk 32 (457)
.+++..||.||+.||+..++|...=+.+.++
T Consensus 88 ~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~ 118 (221)
T PRK15479 88 VKGLNVGADDYLPKPFELEELDARLRALLRR 118 (221)
T ss_pred HHHHHcCCCeeEeCCCCHHHHHHHHHHHHhh
Confidence 4688899999999999999987765555544
No 49
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=62.04 E-value=3.7 Score=35.39 Aligned_cols=28 Identities=21% Similarity=0.244 Sum_probs=22.8
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHV 29 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV 29 (457)
++++..||.+|+.||+..++|...=+.+
T Consensus 93 ~~~~~~g~~~~l~kp~~~~~l~~~i~~~ 120 (210)
T PRK09935 93 GRAIQAGANGFVSKCNDQNDIFHAVQMI 120 (210)
T ss_pred HHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 4688999999999999999887654443
No 50
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=61.77 E-value=4.9 Score=35.62 Aligned_cols=30 Identities=17% Similarity=0.375 Sum_probs=23.1
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVH 31 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~R 31 (457)
.+++..||.|||.||+...+|...=+.+++
T Consensus 97 ~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~ 126 (240)
T PRK10710 97 LLGLEIGADDYICKPYSPREVVARVKTILR 126 (240)
T ss_pred HHHHhcCCCeEEECCCCHHHHHHHHHHHHh
Confidence 357889999999999999998654444443
No 51
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=61.18 E-value=8 Score=38.95 Aligned_cols=32 Identities=25% Similarity=0.514 Sum_probs=26.1
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 33 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk~ 33 (457)
.+++..||.|||.||+..++|...=++++++.
T Consensus 93 ~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~~ 124 (441)
T PRK10365 93 VEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 (441)
T ss_pred HHHHHhhhHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 46788999999999999999887766666543
No 52
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=58.03 E-value=5.4 Score=34.52 Aligned_cols=29 Identities=17% Similarity=0.239 Sum_probs=23.8
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVV 30 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~ 30 (457)
.+++..||.+|+.||+..++|...=+.+.
T Consensus 89 ~~~~~~ga~~~i~kp~~~~~l~~~i~~~~ 117 (204)
T PRK09958 89 KHCADAGANGFVSKKEGMNNIIAAIEAAK 117 (204)
T ss_pred HHHHHCCCCEEEecCCCHHHHHHHHHHHH
Confidence 36788999999999999999887655554
No 53
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=55.44 E-value=8 Score=39.40 Aligned_cols=31 Identities=26% Similarity=0.416 Sum_probs=26.1
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 32 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk 32 (457)
.+|+..||.|||.||+..++|...-.+++..
T Consensus 86 ~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 116 (463)
T TIGR01818 86 VAAYQRGAFEYLPKPFDLDEAVTLVERALAH 116 (463)
T ss_pred HHHHHcCcceeecCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999998877666553
No 54
>PRK15115 response regulator GlrR; Provisional
Probab=55.44 E-value=9.4 Score=38.76 Aligned_cols=31 Identities=23% Similarity=0.431 Sum_probs=25.8
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 32 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk 32 (457)
.+++..||.|||.||+..++|...=++++++
T Consensus 93 ~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 123 (444)
T PRK15115 93 VAATQQGVFSFLTKPVDRDALYKAIDDALEQ 123 (444)
T ss_pred HHHHhcChhhhccCCCCHHHHHHHHHHHHHh
Confidence 4688999999999999999988776666654
No 55
>PRK10403 transcriptional regulator NarP; Provisional
Probab=54.52 E-value=5 Score=34.32 Aligned_cols=29 Identities=21% Similarity=0.140 Sum_probs=24.2
Q ss_pred hhhhchhhHHhhcCCCHHHHHHHHHHHHH
Q 012756 3 KCIALGAVEFLRKPLSEDKLRNLWQHVVH 31 (457)
Q Consensus 3 kci~~GA~DyL~KPlr~~elkniWQHV~R 31 (457)
+++..||.+|+.||+...+|...-+++.+
T Consensus 97 ~~~~~g~~~~i~kp~~~~~l~~~i~~~~~ 125 (215)
T PRK10403 97 ALIDAGADGYLLKDSDPEVLLEAIRAGAK 125 (215)
T ss_pred HHHHcCCCeEEecCCCHHHHHHHHHHHhC
Confidence 56789999999999999998877666653
No 56
>PRK09581 pleD response regulator PleD; Reviewed
Probab=53.20 E-value=9.3 Score=37.35 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=24.0
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVH 31 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~R 31 (457)
.+++..||.||+.||++.++|...=..++|
T Consensus 92 ~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 121 (457)
T PRK09581 92 VRGLEAGADDFLTKPINDVALFARVKSLTR 121 (457)
T ss_pred HHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Confidence 468899999999999999998655544444
No 57
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=51.96 E-value=8.7 Score=39.38 Aligned_cols=31 Identities=23% Similarity=0.431 Sum_probs=26.6
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 32 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk 32 (457)
.+++..||.|||.||+..++|...-++++..
T Consensus 91 ~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 121 (469)
T PRK10923 91 VSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 (469)
T ss_pred HHHHhcCcceEEecCCcHHHHHHHHHHHHHH
Confidence 4688999999999999999998887777654
No 58
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=51.89 E-value=8 Score=38.16 Aligned_cols=28 Identities=25% Similarity=0.221 Sum_probs=23.7
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHV 29 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV 29 (457)
.++++.||.|||.+|+..+||..+=..+
T Consensus 58 ~~a~~~Ga~~~l~~P~~~~~l~~~l~~~ 85 (322)
T TIGR03815 58 RAAAAVGAEHVAVLPEAEGWLVELLADL 85 (322)
T ss_pred HHHHHhChhheeeCCCCHHHHHHHHHhh
Confidence 3689999999999999999987665554
No 59
>PF07830 PP2C_C: Protein serine/threonine phosphatase 2C, C-terminal domain; InterPro: IPR012911 Protein phosphatase 2C (PP2C) is involved in regulating cellular responses to stress in various eukaryotes. It consists of two domains: an N-terminal catalytic domain and a C-terminal domain characteristic of mammalian PP2Cs. This domain consists of three antiparallel alpha helices, one of which packs against two corresponding alpha-helices of the N-terminal domain. The C-terminal domain does not seem to play a role in catalysis, but it may provide protein substrate specificity due to the cleft that is created between it and the catalytic domain []. ; GO: 0000287 magnesium ion binding, 0004721 phosphoprotein phosphatase activity, 0030145 manganese ion binding; PDB: 2P8E_A 3FXL_A 3FXO_A 1A6Q_A 3FXK_A 3FXM_A 3FXJ_A.
Probab=50.14 E-value=24 Score=30.17 Aligned_cols=39 Identities=26% Similarity=0.404 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCChhHHHHHHHHcCCCCCCCC
Q 012756 407 VIDKVVKEAISKPWLPLPLGLKPPSADSVLAELSRQGISTIPPR 450 (457)
Q Consensus 407 ~iDaai~dvl~kPwlPLPlGLKpPs~dsVm~EL~rQGi~~iPp~ 450 (457)
.|.+-|+|+|.+-. .-..|++..||..|+..-|++.||.
T Consensus 27 ~l~~rv~ei~~~~~-----~~~~~~l~~V~~~L~~e~ip~LPPG 65 (81)
T PF07830_consen 27 YLEQRVEEIIEKSS-----EEENPDLVYVMRTLASEDIPGLPPG 65 (81)
T ss_dssp HHHHHHHHHT---------------HHHHHHHHHHTT-SS--TT
T ss_pred HHHHHHHHHHHHhc-----ccCCCCHHHHHHHHHhccCCCCcCC
Confidence 45566788998822 3567899999999999999999996
No 60
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=49.91 E-value=5.9 Score=42.49 Aligned_cols=23 Identities=30% Similarity=0.778 Sum_probs=19.8
Q ss_pred ChhhhhchhhHHhhcCCCHHHHH
Q 012756 1 MMKCIALGAVEFLRKPLSEDKLR 23 (457)
Q Consensus 1 vmkci~~GA~DyL~KPlr~~elk 23 (457)
|.+++..||.||+.||+...+|.
T Consensus 221 ~~~Af~~G~~Dyi~kPi~~~~l~ 243 (435)
T COG3706 221 VVRAFELGVNDYITKPIEEGELR 243 (435)
T ss_pred HHHHHHcCCcceEecCCCHHHHH
Confidence 35789999999999999977765
No 61
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=45.62 E-value=22 Score=29.88 Aligned_cols=28 Identities=29% Similarity=0.681 Sum_probs=21.5
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHV 29 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV 29 (457)
.+++..||.+|+.||+...+|...=+.+
T Consensus 91 ~~~~~~g~~~~l~~p~~~~~l~~~l~~~ 118 (202)
T PRK09390 91 VEAMKLGAVDFIEKPFEDERLIGAIERA 118 (202)
T ss_pred HHHHHcChHHHhhCCCCHHHHHHHHHHH
Confidence 3567899999999999998876543333
No 62
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=43.65 E-value=25 Score=28.46 Aligned_cols=50 Identities=16% Similarity=0.296 Sum_probs=34.0
Q ss_pred cCCHHHHHHHHHHHHHh---C-C-CCCChh-----HHHhhcCC---CCCcHHHHHhhhchhhh
Q 012756 219 DWTPELHKKFVQAVEQL---G-V-DQAIPS-----RILELMKV---EGLTRHNVASHLQKYRM 268 (457)
Q Consensus 219 ~WT~ELH~rFV~AV~qL---G-~-dkAtPK-----~ILelM~V---~gLTr~~VkSHLQKYRl 268 (457)
.||++..+-||+.+.+. | . .....+ .|.+.|+- -.+|..||++|++..|.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~ 63 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK 63 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence 59999999999988553 4 2 123333 35555542 35799999999876554
No 63
>KOG0485 consensus Transcription factor NKX-5.1/HMX1, contains HOX domain [Transcription]
Probab=43.36 E-value=1.7e+02 Score=29.87 Aligned_cols=26 Identities=19% Similarity=0.155 Sum_probs=21.0
Q ss_pred CCcHHHHHhhhchhhhhhcccCCccc
Q 012756 253 GLTRHNVASHLQKYRMHRRHILPKED 278 (457)
Q Consensus 253 gLTr~~VkSHLQKYRl~~k~~l~~~~ 278 (457)
-||-.|||.-.|.-|...|+....+.
T Consensus 142 qLTETQVKIWFQNRRnKwKRq~aad~ 167 (268)
T KOG0485|consen 142 QLTETQVKIWFQNRRNKWKRQYAADL 167 (268)
T ss_pred hhhhhhhhhhhhhhhHHHHHHHhhhh
Confidence 58999999999999987777665544
No 64
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=41.98 E-value=10 Score=41.39 Aligned_cols=24 Identities=25% Similarity=0.574 Sum_probs=21.0
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNL 25 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkni 25 (457)
.+|+..||.|||.||+..++|...
T Consensus 757 ~~~~~~G~~~~l~KP~~~~~L~~~ 780 (919)
T PRK11107 757 ERLLSAGMDDYLAKPIDEAMLKQV 780 (919)
T ss_pred HHHHHcCCCeEeeCCCCHHHHHHH
Confidence 468999999999999999988654
No 65
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=41.72 E-value=9.3 Score=38.78 Aligned_cols=29 Identities=24% Similarity=0.500 Sum_probs=23.3
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVV 30 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~ 30 (457)
.+|+..||.|||.||+..++|...=+++.
T Consensus 92 ~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l 120 (457)
T PRK11361 92 VEALRCGAFDYVIKPFDLDELNLIVQRAL 120 (457)
T ss_pred HHHHHCCccEEEecccCHHHHHHHHhhhc
Confidence 46889999999999999999876544443
No 66
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=41.64 E-value=18 Score=38.88 Aligned_cols=53 Identities=25% Similarity=0.405 Sum_probs=34.8
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCChhHHH--------------hhcCC---CCCcHHHHHhhhchhhhhh
Q 012756 217 KVDWTPELHKKFVQAVEQLGVDQAIPSRIL--------------ELMKV---EGLTRHNVASHLQKYRMHR 270 (457)
Q Consensus 217 Rl~WT~ELH~rFV~AV~qLG~dkAtPK~IL--------------elM~V---~gLTr~~VkSHLQKYRl~~ 270 (457)
-=+|+++.-+.|.+|+...-. .-+=|-|| ...+. +--||.||.||.|.....+
T Consensus 76 egvWSpdIEqsFqEALaiypp-cGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVlarrk 145 (455)
T KOG3841|consen 76 EGVWSPDIEQSFQEALAIYPP-CGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRK 145 (455)
T ss_pred ccccChhHHHHHHHHHhhcCC-CCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 348999999999999987531 01112222 22222 4579999999999865443
No 67
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=40.42 E-value=16 Score=40.26 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=24.8
Q ss_pred hhhhchhhHHhhcCCCHHHHHHHHHHHHH
Q 012756 3 KCIALGAVEFLRKPLSEDKLRNLWQHVVH 31 (457)
Q Consensus 3 kci~~GA~DyL~KPlr~~elkniWQHV~R 31 (457)
+|+..|+++||.||+..++|...=.++.+
T Consensus 771 ~~~~~g~~~~l~KP~~~~~L~~~i~~~~~ 799 (914)
T PRK11466 771 QRTSSLFRGIIPKPVPREVLGQLLAHYLQ 799 (914)
T ss_pred HHHhcCcCCEEeCCCCHHHHHHHHHHHhh
Confidence 57889999999999999999887666554
No 68
>PRK09483 response regulator; Provisional
Probab=40.39 E-value=15 Score=32.22 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=20.2
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNL 25 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkni 25 (457)
.+++..||.+|+.||+..++|...
T Consensus 91 ~~~~~~g~~~~l~k~~~~~~l~~~ 114 (217)
T PRK09483 91 AKVMQAGAAGYLSKGAAPQEVVSA 114 (217)
T ss_pred HHHHHcCCCEEEeCCCCHHHHHHH
Confidence 357889999999999999988644
No 69
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=39.91 E-value=16 Score=40.07 Aligned_cols=28 Identities=21% Similarity=0.434 Sum_probs=23.2
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHV 29 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV 29 (457)
.+|+..||.|||.||+..++|...=..+
T Consensus 782 ~~~~~~G~~~~l~KP~~~~~L~~~l~~~ 809 (921)
T PRK15347 782 HRCKKAGMNHYLTKPVTLAQLARALELA 809 (921)
T ss_pred HHHHHCCCCEEEECCCCHHHHHHHHHHH
Confidence 3688999999999999999997654443
No 70
>PF11888 DUF3408: Protein of unknown function (DUF3408); InterPro: IPR021823 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 128 to 160 amino acids in length.
Probab=37.89 E-value=44 Score=30.08 Aligned_cols=50 Identities=22% Similarity=0.357 Sum_probs=39.5
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCChhHHHhhcCCCCCcHHHHHhhhchhhhhhcccCCc
Q 012756 218 VDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPK 276 (457)
Q Consensus 218 l~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl~~k~~l~~ 276 (457)
+-=..|+|++....|..||..+.|-..+++-+ ++-||..|+.-+..+..+
T Consensus 83 vyI~~e~h~~l~~Iv~~ig~~~~si~~yidNI---------L~~Hle~~~eeI~~l~~~ 132 (136)
T PF11888_consen 83 VYISRETHERLSRIVRVIGERKMSISGYIDNI---------LRHHLEEYREEINELYEK 132 (136)
T ss_pred eEECHHHHHHHHHHHHHHCCCCCcHHHHHHHH---------HHHHHHHHHHHHHHHHHH
Confidence 77789999999999999998777776666544 466999999877665544
No 71
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=36.58 E-value=14 Score=36.60 Aligned_cols=16 Identities=19% Similarity=0.505 Sum_probs=14.7
Q ss_pred hhhhhchhhHHhhcCC
Q 012756 2 MKCIALGAVEFLRKPL 17 (457)
Q Consensus 2 mkci~~GA~DyL~KPl 17 (457)
++|+..||.||+.||+
T Consensus 91 ~~al~~Ga~d~l~KP~ 106 (337)
T PRK12555 91 FEAMGAGALDAVDTPT 106 (337)
T ss_pred HHHHhcCceEEEECCC
Confidence 4689999999999999
No 72
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=34.17 E-value=22 Score=30.03 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=20.9
Q ss_pred hhhhchhhHHhhcCCCHHHHHHHHHH
Q 012756 3 KCIALGAVEFLRKPLSEDKLRNLWQH 28 (457)
Q Consensus 3 kci~~GA~DyL~KPlr~~elkniWQH 28 (457)
+++..||.+|+.||+...+|...=+.
T Consensus 94 ~~~~~g~~~~l~kp~~~~~l~~~i~~ 119 (211)
T PRK15369 94 RTLAAGALGYVLKKSPQQILLAAIQT 119 (211)
T ss_pred HHHHhCCCEEEeCCCCHHHHHHHHHH
Confidence 56788999999999999887765433
No 73
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=32.95 E-value=22 Score=39.32 Aligned_cols=29 Identities=28% Similarity=0.482 Sum_probs=23.9
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVV 30 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~ 30 (457)
.+|+..|+.|||.||++.++|...=.+++
T Consensus 793 ~~~~~~G~~~~l~KP~~~~~L~~~l~~~~ 821 (968)
T TIGR02956 793 AQYLAAGFDGFLAKPVVEEQLTAMIAVIL 821 (968)
T ss_pred HHHHHCCCCEEEeCCCCHHHHHHHHHHHh
Confidence 47899999999999999999976654443
No 74
>PRK12515 RNA polymerase sigma factor; Provisional
Probab=31.40 E-value=48 Score=29.86 Aligned_cols=57 Identities=14% Similarity=0.296 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhCCC-----------CCChhHHHhhcCCCCCcHHHHHhhhchhhhhhcccCCccc-cccC
Q 012756 223 ELHKKFVQAVEQLGVD-----------QAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPKED-DRKW 282 (457)
Q Consensus 223 ELH~rFV~AV~qLG~d-----------kAtPK~ILelM~V~gLTr~~VkSHLQKYRl~~k~~l~~~~-~~~w 282 (457)
++...+.+++.+|... .-+.+.|-+.| |+|...|+++|.+=|..++..+..+. .+.|
T Consensus 120 ~~~~~l~~~l~~L~~~~r~vl~l~~~~~~s~~eIA~~l---gis~~tV~~~l~Rar~~Lr~~l~~~~~~~~~ 188 (189)
T PRK12515 120 DTSAALRACLAKLSPAHREIIDLVYYHEKSVEEVGEIV---GIPESTVKTRMFYARKKLAELLKAAGVERGW 188 (189)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCHHHHHHHH---CcCHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 3445566667666522 34445555555 55778888888888877777665544 4555
No 75
>PRK10651 transcriptional regulator NarL; Provisional
Probab=30.47 E-value=23 Score=30.38 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=21.7
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHV 29 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV 29 (457)
.+++..||.+|+.||+...+|...=+.+
T Consensus 96 ~~~~~~g~~~~i~k~~~~~~l~~~i~~~ 123 (216)
T PRK10651 96 VTALKRGADGYLLKDMEPEDLLKALQQA 123 (216)
T ss_pred HHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 3578889999999999998876554433
No 76
>PRK09642 RNA polymerase sigma factor SigW; Reviewed
Probab=30.16 E-value=61 Score=28.16 Aligned_cols=51 Identities=14% Similarity=0.061 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhCCC-----------CCChhHHHhhcCCCCCcHHHHHhhhchhhhhhcccCCcc
Q 012756 224 LHKKFVQAVEQLGVD-----------QAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPKE 277 (457)
Q Consensus 224 LH~rFV~AV~qLG~d-----------kAtPK~ILelM~V~gLTr~~VkSHLQKYRl~~k~~l~~~ 277 (457)
+-..+..++++|... .-+.+.|-+.| |++...|++||.+-|..++..+.++
T Consensus 96 ~~~~l~~~l~~Lp~~~r~v~~l~~~~g~s~~EIA~~l---gis~~tV~~~l~Rar~~Lr~~l~~~ 157 (160)
T PRK09642 96 QKLLIAQKLRELPENYRDVVLAHYLEEKSYQEIALQE---KIEVKTVEMKLYRARKWIKKHWKEE 157 (160)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhCCCHHHHHHHH---CCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 344456666666522 24455555555 6678889999999998888776543
No 77
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=30.08 E-value=27 Score=38.11 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=22.8
Q ss_pred hhhhchhhHHhhcCCCHHHHHHHHHHHH
Q 012756 3 KCIALGAVEFLRKPLSEDKLRNLWQHVV 30 (457)
Q Consensus 3 kci~~GA~DyL~KPlr~~elkniWQHV~ 30 (457)
+|+..||.|||.||++.++|...=.+++
T Consensus 616 ~~~~~G~~~~l~KP~~~~~L~~~l~~~~ 643 (779)
T PRK11091 616 EYLDAGMDDVLSKPLSVPALTAMIKKFW 643 (779)
T ss_pred HHHHCCCCEEEECCCCHHHHHHHHHHHh
Confidence 5788999999999999999876554443
No 78
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=29.72 E-value=19 Score=41.11 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=21.1
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNL 25 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkni 25 (457)
.+|+..||.|||.||+..++|...
T Consensus 1046 ~~~~~~G~~~~l~KP~~~~~L~~~ 1069 (1197)
T PRK09959 1046 EKGLSCGMNLCLFKPLTLDVLKTH 1069 (1197)
T ss_pred HHHHHCCCCEEEeCCCCHHHHHHH
Confidence 478999999999999999998644
No 79
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=26.39 E-value=49 Score=29.16 Aligned_cols=22 Identities=23% Similarity=0.551 Sum_probs=19.9
Q ss_pred CCCCCChhHHHHHHHHcCCCCC
Q 012756 426 GLKPPSADSVLAELSRQGISTI 447 (457)
Q Consensus 426 GLKpPs~dsVm~EL~rQGi~~i 447 (457)
|++-|+++.+|.+|.++|+..|
T Consensus 52 ~~~~p~~~eaL~~l~~~G~~~V 73 (127)
T cd03412 52 GIEVDTPEEALAKLAADGYTEV 73 (127)
T ss_pred CCCCCCHHHHHHHHHHCCCCEE
Confidence 5778999999999999999864
No 80
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=26.07 E-value=31 Score=34.31 Aligned_cols=17 Identities=41% Similarity=0.925 Sum_probs=15.0
Q ss_pred hhhhhchhhHHhhcCCC
Q 012756 2 MKCIALGAVEFLRKPLS 18 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr 18 (457)
.+++..||.|||.||+.
T Consensus 94 ~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 94 LRALELGAVDFVTKPFL 110 (354)
T ss_pred HHHHhCCCcEEEeCCcc
Confidence 36889999999999994
No 81
>COG3360 Uncharacterized conserved protein [Function unknown]
Probab=25.81 E-value=31 Score=29.16 Aligned_cols=15 Identities=27% Similarity=0.483 Sum_probs=13.2
Q ss_pred cHHHHHHHHHHHHhC
Q 012756 404 AEEVIDKVVKEAISK 418 (457)
Q Consensus 404 s~E~iDaai~dvl~k 418 (457)
|++|||+||.++|..
T Consensus 15 Sp~S~d~Ai~~Ai~R 29 (71)
T COG3360 15 SPTSIDAAIANAIAR 29 (71)
T ss_pred CCccHHHHHHHHHHH
Confidence 679999999999864
No 82
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=25.58 E-value=71 Score=25.73 Aligned_cols=20 Identities=20% Similarity=0.501 Sum_probs=17.4
Q ss_pred CCCChhHHHHHHHHcCCCCC
Q 012756 428 KPPSADSVLAELSRQGISTI 447 (457)
Q Consensus 428 KpPs~dsVm~EL~rQGi~~i 447 (457)
-.|+++.++.+|.++|+..|
T Consensus 43 ~~P~i~~~l~~l~~~g~~~v 62 (101)
T cd03409 43 LGPDTEEAIRELAEEGYQRV 62 (101)
T ss_pred CCCCHHHHHHHHHHcCCCeE
Confidence 47899999999999998763
No 83
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]
Probab=25.41 E-value=68 Score=32.56 Aligned_cols=60 Identities=27% Similarity=0.392 Sum_probs=41.8
Q ss_pred ccCCCCcccCCH----HHHHHHHHHHHHhCCCCCChhHHHhhcCCCCCcHHHHHhhhchhhhhhcccCCc
Q 012756 211 ANRKKMKVDWTP----ELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPK 276 (457)
Q Consensus 211 ~~~kK~Rl~WT~----ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl~~k~~l~~ 276 (457)
...||+|-..+. .|.+||-..=. | |.|.+- +|--.-|||..|||.-.|.=|...|+++..
T Consensus 120 KK~RKPRTIYSS~QLqaL~rRFQkTQY-L----ALPERA-eLAAsLGLTQTQVKIWFQNrRSK~KKl~k~ 183 (245)
T KOG0850|consen 120 KKVRKPRTIYSSLQLQALNRRFQQTQY-L----ALPERA-ELAASLGLTQTQVKIWFQNRRSKFKKLKKQ 183 (245)
T ss_pred ccccCCcccccHHHHHHHHHHHhhcch-h----cCcHHH-HHHHHhCCchhHhhhhhhhhHHHHHHHHhc
Confidence 356788888875 57888865422 2 344432 222345999999999999999988887663
No 84
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=24.42 E-value=33 Score=32.55 Aligned_cols=24 Identities=13% Similarity=0.014 Sum_probs=19.1
Q ss_pred hhh-hchhhHHhhcCCCHHHHHHHH
Q 012756 3 KCI-ALGAVEFLRKPLSEDKLRNLW 26 (457)
Q Consensus 3 kci-~~GA~DyL~KPlr~~elkniW 26 (457)
+++ +.||.+||.|+...++|..-=
T Consensus 85 ~~~~~~Ga~gyl~K~~~~~eL~~aI 109 (207)
T PRK11475 85 GSLSPSPLDGVLSKASTLEILQQEL 109 (207)
T ss_pred HHHHHcCCeEEEecCCCHHHHHHHH
Confidence 344 689999999999999876543
No 85
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=23.81 E-value=1.1e+02 Score=20.72 Aligned_cols=30 Identities=17% Similarity=0.229 Sum_probs=20.2
Q ss_pred CCCChhHHHhhcCCCCCcHHHHHhhhchhhhhh
Q 012756 238 DQAIPSRILELMKVEGLTRHNVASHLQKYRMHR 270 (457)
Q Consensus 238 dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl~~ 270 (457)
+.-+.+.|-+.|| ++...|.+++++.+..+
T Consensus 25 ~~~~~~~ia~~~~---~s~~~i~~~~~~~~~~l 54 (55)
T cd06171 25 EGLSYEEIAEILG---ISRSTVRQRLHRALKKL 54 (55)
T ss_pred cCCCHHHHHHHHC---cCHHHHHHHHHHHHHHc
Confidence 3346777777774 66777777777766543
No 86
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=22.59 E-value=28 Score=27.36 Aligned_cols=20 Identities=35% Similarity=0.858 Sum_probs=17.0
Q ss_pred CCCCCCChhHHHHHHHHcCC
Q 012756 425 LGLKPPSADSVLAELSRQGI 444 (457)
Q Consensus 425 lGLKpPs~dsVm~EL~rQGi 444 (457)
||.+||++-..+..|.++|.
T Consensus 32 L~vs~~tvt~ml~~L~~~Gl 51 (60)
T PF01325_consen 32 LGVSPPTVTEMLKRLAEKGL 51 (60)
T ss_dssp HTS-HHHHHHHHHHHHHTTS
T ss_pred HCCChHHHHHHHHHHHHCCC
Confidence 68899999999999999986
No 87
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=22.00 E-value=1.7e+02 Score=21.92 Aligned_cols=41 Identities=20% Similarity=0.286 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCCChhHHHhhcCCCCCcHHHHHhhhch
Q 012756 220 WTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQK 265 (457)
Q Consensus 220 WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQK 265 (457)
||.|=-++.+++|.+.|. .-+.|-+.|+ .-|..+|+.+..+
T Consensus 1 WT~eEd~~L~~~~~~~g~---~W~~Ia~~l~--~Rt~~~~~~r~~~ 41 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN---DWKKIAEHLG--NRTPKQCRNRWRN 41 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS----HHHHHHHST--TS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCc---CHHHHHHHHC--cCCHHHHHHHHHH
Confidence 999999999999999985 3688999985 5788888876655
No 88
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.54 E-value=3.2e+02 Score=30.38 Aligned_cols=113 Identities=16% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHhhhchhhhh-hcccCCccccccCchhhhhhhccc-CCCCCCcCCCCCCCCCCCCCCCCCcccCCCCCCCccccccCCC
Q 012756 259 VASHLQKYRMH-RRHILPKEDDRKWPHARDQMLRNY-YPHKPIMAFPPYHSNHLVPTGPVYPVWGAPSNHLAAVQMWAPP 336 (457)
Q Consensus 259 VkSHLQKYRl~-~k~~l~~~~~~~w~~~R~~~~~n~-~~~~p~~~f~p~~~~h~~p~~~~~~vwG~p~~~~~~~~~w~~~ 336 (457)
.+.|-|.||.+ .++...|.....-+..+...+.++ -......++.|+.+++. |+++.+.++ .+
T Consensus 367 n~p~~~~y~~r~~~~gf~rp~s~~~q~pP~~~q~~~~p~~~~~s~p~pq~qNyp-pp~p~f~m~--------------~~ 431 (483)
T KOG2236|consen 367 NQPAPQMYRGRDQNRGFKRPRSNHGQKPPQSAQNSFHPSSSDNSGPSPQQQNYP-PPSPSFPMF--------------QP 431 (483)
T ss_pred cCCcccccCCcccccCCCCcccccCCCCCcccccccCccccCCCCCCcccCCCC-CCCCCCCcc--------------CC
Q ss_pred CCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 012756 337 GYPPWQQAESWNWK-PYPGMPADAWGCPVMPLPNGPYSSFPQGASGYHNSGVDDN 390 (457)
Q Consensus 337 ~~~~w~p~~~w~~~-py~~~~~~awG~p~~p~~~~p~~~~p~~~~g~~~~~~~~~ 390 (457)
....=.|+...-|. ||.+|...- |++-++.+| .+.|.+..+++.+....|
T Consensus 432 hP~~~~p~~~~g~~~P~~~mpp~~---P~~~~pppP-~~pp~p~~~~~q~q~~~y 482 (483)
T KOG2236|consen 432 HPPESNPPANFGQANPFNQMPPAY---PHQQSPPPP-PPPPPPNSPMNQMQNPSY 482 (483)
T ss_pred CCCCCCCcccccccCccccCCCCC---ccccCCCCC-CCCCCCCChhhcccCCCC
No 89
>PRK11923 algU RNA polymerase sigma factor AlgU; Provisional
Probab=20.46 E-value=97 Score=27.83 Aligned_cols=49 Identities=20% Similarity=0.165 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhCCCC-----------CChhHHHhhcCCCCCcHHHHHhhhchhhhhhcccC
Q 012756 223 ELHKKFVQAVEQLGVDQ-----------AIPSRILELMKVEGLTRHNVASHLQKYRMHRRHIL 274 (457)
Q Consensus 223 ELH~rFV~AV~qLG~dk-----------AtPK~ILelM~V~gLTr~~VkSHLQKYRl~~k~~l 274 (457)
++++.|.+|+..|.... -+.+.|-+.| |+|...|++||++=|..+++.+
T Consensus 127 ~~~~~l~~~l~~L~~~~r~v~~l~~~~g~s~~eIA~~l---gis~~tv~~~l~Rar~~Lr~~l 186 (193)
T PRK11923 127 EIEGTVHRTIQQLPEDLRTALTLREFDGLSYEDIASVM---QCPVGTVRSRIFRAREAIDKAL 186 (193)
T ss_pred HHHHHHHHHHHhCCHHHhHHHhhHHhcCCCHHHHHHHH---CCCHHHHHHHHHHHHHHHHHHH
Confidence 45667888888776322 2334444444 4456677777777776666544
No 90
>TIGR02989 Sig-70_gvs1 RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are abundantly found in the species Rhodopirellula baltica (11), and Verrucomicrobium spinosum (16) and to a lesser extent in Gemmata obscuriglobus (2).
Probab=20.42 E-value=1.6e+02 Score=25.23 Aligned_cols=47 Identities=21% Similarity=0.242 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhCCCC-----------CChhHHHhhcCCCCCcHHHHHhhhchhhhhhc
Q 012756 222 PELHKKFVQAVEQLGVDQ-----------AIPSRILELMKVEGLTRHNVASHLQKYRMHRR 271 (457)
Q Consensus 222 ~ELH~rFV~AV~qLG~dk-----------AtPK~ILelM~V~gLTr~~VkSHLQKYRl~~k 271 (457)
.+++..+.+|++.|.... -+.+.|-+.| |+|...|+++|.+=|..++
T Consensus 99 ~~~~~~l~~~i~~L~~~~r~v~~l~~~~g~~~~eIA~~l---~is~~tv~~~l~Rar~~Lr 156 (159)
T TIGR02989 99 EDELQALEGCLEKLPERQRELLQLRYQRGVSLTALAEQL---GRTVNAVYKALSRLRVRLR 156 (159)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHhcCCCHHHHHHHh---CCCHHHHHHHHHHHHHHHH
Confidence 455667788888877332 3334444444 4455666666655555444
No 91
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=20.23 E-value=65 Score=27.69 Aligned_cols=29 Identities=21% Similarity=0.432 Sum_probs=22.1
Q ss_pred CCCCCCC---CCCCCChhHHHHHHHHcCCCCC
Q 012756 419 PWLPLPL---GLKPPSADSVLAELSRQGISTI 447 (457)
Q Consensus 419 PwlPLPl---GLKpPs~dsVm~EL~rQGi~~i 447 (457)
|+.+.=. .+-.|+++.++.+|.++|+..|
T Consensus 32 ~~~~v~~afle~~~P~l~~~l~~l~~~g~~~v 63 (126)
T PRK00923 32 PFYIVEVGFMEFNEPTIPEALKKLIGTGADKI 63 (126)
T ss_pred CCCeEEEEEEEcCCCCHHHHHHHHHHcCCCEE
Confidence 5544433 3678999999999999998753
No 92
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=20.23 E-value=59 Score=31.16 Aligned_cols=49 Identities=22% Similarity=0.350 Sum_probs=36.6
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCCCCChhHHHhhcC-CCCCcHHHHHhhhchhhhh
Q 012756 215 KMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMK-VEGLTRHNVASHLQKYRMH 269 (457)
Q Consensus 215 K~Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~-V~gLTr~~VkSHLQKYRl~ 269 (457)
-.+|||...+-..+.+||+.---..-. .+. ...||+++|-+-||.|...
T Consensus 46 ACGFRWNs~VRkqY~~~i~~AKkqRk~------~~~~~~~ltl~~vI~fLq~l~~~ 95 (161)
T TIGR02894 46 ACGFRWNAYVRKQYEEAIELAKKQRKE------LKREAGSLTLQDVISFLQNLKTT 95 (161)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHhc------cccCcccCCHHHHHHHHHHHHhc
Confidence 457999999999999999875422111 122 2679999999999999853
Done!