Query 012756
Match_columns 457
No_of_seqs 212 out of 399
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 15:37:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012756.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012756hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 100.0 8.1E-29 2.8E-33 195.9 6.8 62 212-273 2-63 (64)
2 3h5i_A Response regulator/sens 95.4 0.0069 2.4E-07 48.5 2.4 39 2-40 94-132 (140)
3 3kht_A Response regulator; PSI 95.1 0.0097 3.3E-07 47.5 2.4 39 2-40 97-136 (144)
4 2yus_A SWI/SNF-related matrix- 94.4 0.083 2.8E-06 42.5 6.2 48 216-268 17-64 (79)
5 3n53_A Response regulator rece 94.2 0.022 7.4E-07 45.3 2.4 33 2-34 92-124 (140)
6 2qv0_A Protein MRKE; structura 94.1 0.023 8E-07 45.0 2.4 37 2-38 97-133 (143)
7 3jte_A Response regulator rece 93.5 0.033 1.1E-06 44.2 2.3 34 2-35 93-126 (143)
8 2qzj_A Two-component response 93.1 0.031 1E-06 44.7 1.5 33 2-34 91-123 (136)
9 2cu7_A KIAA1915 protein; nucle 93.0 0.18 6.2E-06 39.1 5.7 49 217-270 9-57 (72)
10 3gt7_A Sensor protein; structu 92.7 0.024 8.3E-07 46.3 0.4 33 2-34 97-129 (154)
11 3cu5_A Two component transcrip 92.4 0.057 1.9E-06 43.4 2.3 33 2-34 93-125 (141)
12 2zay_A Response regulator rece 92.3 0.044 1.5E-06 43.6 1.4 34 2-35 98-131 (147)
13 1mvo_A PHOP response regulator 92.3 0.044 1.5E-06 42.9 1.4 31 2-32 91-121 (136)
14 3hv2_A Response regulator/HD d 92.3 0.053 1.8E-06 43.9 1.9 34 2-35 102-136 (153)
15 2yum_A ZZZ3 protein, zinc fing 92.2 0.23 7.9E-06 38.6 5.4 52 217-270 8-62 (75)
16 3r0j_A Possible two component 91.3 0.067 2.3E-06 47.5 1.7 32 2-33 111-142 (250)
17 3cfy_A Putative LUXO repressor 91.3 0.093 3.2E-06 42.0 2.3 33 2-34 92-124 (137)
18 1qkk_A DCTD, C4-dicarboxylate 91.2 0.074 2.5E-06 43.0 1.7 33 2-34 91-123 (155)
19 2qxy_A Response regulator; reg 91.1 0.051 1.7E-06 43.0 0.6 34 2-35 91-124 (142)
20 3f6c_A Positive transcription 90.6 0.05 1.7E-06 42.5 0.1 31 2-32 90-120 (134)
21 1ys7_A Transcriptional regulat 90.4 0.11 3.9E-06 44.7 2.2 33 2-34 95-127 (233)
22 1s8n_A Putative antiterminator 90.4 0.093 3.2E-06 44.8 1.6 32 2-33 101-132 (205)
23 1yio_A Response regulatory pro 90.3 0.12 4.2E-06 43.9 2.3 33 2-34 92-124 (208)
24 2hzd_A Transcriptional enhance 90.1 0.43 1.5E-05 39.6 5.3 56 215-273 4-78 (82)
25 3rqi_A Response regulator prot 90.1 0.047 1.6E-06 46.3 -0.5 33 2-34 95-127 (184)
26 3kcn_A Adenylate cyclase homol 89.9 0.11 3.8E-06 41.9 1.6 33 2-34 92-125 (151)
27 2qsj_A DNA-binding response re 89.5 0.079 2.7E-06 42.6 0.5 31 2-32 94-124 (154)
28 1qo0_D AMIR; binding protein, 89.5 0.1 3.4E-06 44.3 1.1 32 2-33 95-126 (196)
29 2iw5_B Protein corest, REST co 89.3 0.36 1.2E-05 46.6 4.9 51 214-269 130-180 (235)
30 2rjn_A Response regulator rece 89.0 0.15 5.1E-06 41.2 1.7 33 2-34 95-128 (154)
31 2xag_B REST corepressor 1; ami 88.3 0.53 1.8E-05 49.3 5.7 51 215-270 378-428 (482)
32 1kgs_A DRRD, DNA binding respo 88.2 0.14 4.9E-06 43.8 1.2 32 2-33 90-121 (225)
33 1a04_A Nitrate/nitrite respons 88.1 0.14 4.9E-06 43.8 1.2 30 2-31 95-124 (215)
34 1x41_A Transcriptional adaptor 88.1 0.62 2.1E-05 35.0 4.5 47 217-268 8-55 (60)
35 3dzd_A Transcriptional regulat 87.9 0.16 5.4E-06 49.6 1.4 33 2-34 88-120 (368)
36 3cz5_A Two-component response 87.3 0.1 3.5E-06 42.0 -0.2 31 2-32 95-125 (153)
37 2cqr_A RSGI RUH-043, DNAJ homo 86.3 2.2 7.5E-05 34.0 7.0 49 217-267 18-67 (73)
38 1p2f_A Response regulator; DRR 86.2 0.22 7.7E-06 42.8 1.3 31 2-32 87-117 (220)
39 3q9s_A DNA-binding response re 86.2 0.13 4.4E-06 46.3 -0.3 30 2-31 124-153 (249)
40 1ny5_A Transcriptional regulat 85.8 0.25 8.4E-06 48.4 1.5 32 2-33 88-119 (387)
41 3eq2_A Probable two-component 85.7 0.26 8.9E-06 47.0 1.5 33 2-34 93-126 (394)
42 2oqr_A Sensory transduction pr 85.6 0.18 6.2E-06 43.5 0.4 31 2-32 91-121 (230)
43 1w25_A Stalked-cell differenti 84.4 0.33 1.1E-05 47.0 1.6 32 2-33 91-122 (459)
44 2jk1_A HUPR, hydrogenase trans 84.1 0.38 1.3E-05 38.1 1.6 32 2-33 88-120 (139)
45 3klo_A Transcriptional regulat 83.8 0.27 9.1E-06 42.8 0.6 30 2-31 99-128 (225)
46 3c3w_A Two component transcrip 83.7 0.2 7E-06 43.8 -0.1 32 2-33 91-122 (225)
47 3sy8_A ROCR; TIM barrel phosph 83.6 0.32 1.1E-05 47.1 1.2 32 2-33 98-129 (400)
48 3sjm_A Telomeric repeat-bindin 83.5 2 6.8E-05 33.1 5.4 49 217-271 11-60 (64)
49 1ity_A TRF1; helix-turn-helix, 83.5 2.3 8E-05 32.5 5.8 59 212-276 5-64 (69)
50 3c3m_A Response regulator rece 83.4 0.16 5.5E-06 40.3 -0.9 29 4-32 95-123 (138)
51 2elk_A SPCC24B10.08C protein; 83.2 1.6 5.4E-05 32.7 4.6 46 219-268 11-57 (58)
52 3bre_A Probable two-component 82.9 0.52 1.8E-05 43.6 2.3 30 2-31 109-138 (358)
53 2hqr_A Putative transcriptiona 82.1 0.19 6.6E-06 43.2 -0.9 29 2-30 84-113 (223)
54 2gwr_A DNA-binding response re 79.7 0.24 8.1E-06 43.5 -1.2 28 2-29 92-119 (238)
55 2eqr_A N-COR1, N-COR, nuclear 77.4 5.2 0.00018 30.2 5.8 51 213-271 8-58 (61)
56 1guu_A C-MYB, MYB proto-oncoge 76.6 3.8 0.00013 29.4 4.7 45 217-266 3-48 (52)
57 2d9a_A B-MYB, MYB-related prot 76.4 5 0.00017 29.7 5.4 47 215-266 6-53 (60)
58 2cqq_A RSGI RUH-037, DNAJ homo 73.9 5.6 0.00019 31.5 5.4 44 219-267 10-56 (72)
59 2yqk_A Arginine-glutamic acid 73.1 7.1 0.00024 29.8 5.6 52 214-272 6-57 (63)
60 1gvd_A MYB proto-oncogene prot 70.8 6.5 0.00022 28.3 4.7 45 217-266 3-48 (52)
61 2roh_A RTBP1, telomere binding 67.3 12 0.00041 32.7 6.4 54 212-271 26-82 (122)
62 2dim_A Cell division cycle 5-l 66.3 11 0.00038 28.6 5.5 47 215-266 7-54 (70)
63 2cjj_A Radialis; plant develop 65.6 6.2 0.00021 32.8 4.1 47 219-269 10-59 (93)
64 1w0t_A Telomeric repeat bindin 62.4 14 0.00047 26.7 5.1 45 217-264 2-47 (53)
65 3luf_A Two-component system re 61.2 1.7 5.8E-05 39.5 -0.1 19 2-20 90-108 (259)
66 2aje_A Telomere repeat-binding 60.8 12 0.0004 31.9 5.1 54 212-271 8-64 (105)
67 2din_A Cell division cycle 5-l 58.9 15 0.00051 27.7 4.9 45 217-267 9-53 (66)
68 1a2o_A CHEB methylesterase; ba 56.1 3.9 0.00013 39.7 1.5 17 2-18 94-110 (349)
69 2ltp_A Nuclear receptor corepr 60.8 2.4 8.2E-05 34.4 0.0 46 218-268 17-62 (89)
70 2k9n_A MYB24; R2R3 domain, DNA 52.6 16 0.00055 29.8 4.5 47 217-268 53-99 (107)
71 1wgx_A KIAA1903 protein; MYB D 51.7 13 0.00046 29.8 3.7 46 219-266 10-56 (73)
72 1gv2_A C-MYB, MYB proto-oncoge 50.1 18 0.00063 29.1 4.4 43 217-264 56-98 (105)
73 2crg_A Metastasis associated p 49.8 32 0.0011 26.8 5.5 51 215-272 6-56 (70)
74 3osg_A MYB21; transcription-DN 46.7 30 0.001 29.0 5.4 48 214-266 8-55 (126)
75 3cwo_X Beta/alpha-barrel prote 46.0 1.6 5.6E-05 37.3 -2.6 24 2-25 69-94 (237)
76 3zqc_A MYB3; transcription-DNA 44.0 31 0.001 29.1 5.0 42 219-265 56-97 (131)
77 1h8a_C AMV V-MYB, MYB transfor 43.0 24 0.00083 29.5 4.2 43 217-264 79-121 (128)
78 4eef_G F-HB80.4, designed hema 43.0 8.3 0.00029 31.5 1.3 45 219-265 22-67 (74)
79 1gv2_A C-MYB, MYB proto-oncoge 37.8 42 0.0014 26.9 4.7 45 218-266 5-49 (105)
80 1w25_A Stalked-cell differenti 37.7 14 0.0005 35.5 2.3 30 3-32 241-270 (459)
81 3hu3_A Transitional endoplasmi 37.5 2.5 8.4E-05 43.3 -3.3 22 2-23 123-144 (489)
82 3osg_A MYB21; transcription-DN 37.3 40 0.0014 28.2 4.7 44 218-266 63-106 (126)
83 2xvy_A Chelatase, putative; me 37.2 18 0.00063 33.2 2.8 42 406-447 26-82 (269)
84 2juh_A Telomere binding protei 36.2 54 0.0018 28.5 5.4 54 212-271 12-68 (121)
85 1x58_A Hypothetical protein 49 35.1 80 0.0027 24.8 5.7 52 216-273 7-59 (62)
86 2llk_A Cyclin-D-binding MYB-li 34.8 55 0.0019 25.9 4.8 42 216-263 22-63 (73)
87 1h89_C C-MYB, MYB proto-oncoge 34.0 57 0.0019 28.1 5.2 43 217-264 110-152 (159)
88 2k9n_A MYB24; R2R3 domain, DNA 33.5 54 0.0018 26.7 4.7 46 218-271 2-48 (107)
89 3lyh_A Cobalamin (vitamin B12) 31.4 30 0.001 28.3 2.9 41 406-447 25-65 (126)
90 2ckx_A NGTRF1, telomere bindin 30.6 62 0.0021 26.2 4.5 47 219-271 2-51 (83)
91 3b73_A PHIH1 repressor-like pr 29.0 77 0.0026 26.6 5.0 49 217-268 7-55 (111)
92 1wh5_A ZF-HD homeobox family p 27.0 1.5E+02 0.005 23.2 6.1 60 212-271 16-77 (80)
93 1h8a_C AMV V-MYB, MYB transfor 24.8 93 0.0032 25.9 4.8 44 217-265 27-71 (128)
94 1qgp_A Protein (double strande 24.7 61 0.0021 25.2 3.4 45 219-266 10-55 (77)
95 1wh7_A ZF-HD homeobox family p 24.2 1.8E+02 0.006 22.9 6.1 60 211-271 15-77 (80)
96 2xwp_A Sirohydrochlorin cobalt 24.1 34 0.0011 31.8 2.1 22 426-447 56-77 (264)
97 2vyc_A Biodegradative arginine 21.5 29 0.00098 37.3 1.2 31 2-33 102-134 (755)
98 2p7v_B Sigma-70, RNA polymeras 21.2 1.7E+02 0.006 21.1 5.2 38 237-277 23-60 (68)
99 3plv_C 66 kDa U4/U6.U5 small n 20.5 34 0.0012 21.9 1.0 7 425-431 14-20 (21)
100 1h89_C C-MYB, MYB proto-oncoge 20.5 1.2E+02 0.004 26.1 4.7 46 217-266 58-103 (159)
101 2da3_A Alpha-fetoprotein enhan 20.1 1.3E+02 0.0044 22.8 4.4 60 212-273 16-75 (80)
102 3zqc_A MYB3; transcription-DNA 20.1 95 0.0032 26.1 4.0 43 219-266 4-47 (131)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.95 E-value=8.1e-29 Score=195.87 Aligned_cols=62 Identities=55% Similarity=0.923 Sum_probs=59.7
Q ss_pred cCCCCcccCCHHHHHHHHHHHHHhCCCCCChhHHHhhcCCCCCcHHHHHhhhchhhhhhccc
Q 012756 212 NRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHI 273 (457)
Q Consensus 212 ~~kK~Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl~~k~~ 273 (457)
+.+|+||+||+|||++||+||++||.++||||.||++|+|+|||++||||||||||++++++
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 46899999999999999999999999999999999999999999999999999999999875
No 2
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=95.39 E-value=0.0069 Score=48.47 Aligned_cols=39 Identities=13% Similarity=0.040 Sum_probs=32.7
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHHHHhhCCCC
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGSA 40 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk~~~~~~~~ 40 (457)
.+++..||.+||.||+..++|...-+.++++........
T Consensus 94 ~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~~~~~~ 132 (140)
T 3h5i_A 94 EKIRSVTAYGYVMKSATEQVLITIVEMALRLYEANVHAN 132 (140)
T ss_dssp GGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHhCCCcEEEeCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence 578999999999999999999999999998876654443
No 3
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=95.07 E-value=0.0097 Score=47.51 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=34.4
Q ss_pred hhhhhchhhHHhhcCC-CHHHHHHHHHHHHHHHHhhCCCC
Q 012756 2 MKCIALGAVEFLRKPL-SEDKLRNLWQHVVHKAFNAGGSA 40 (457)
Q Consensus 2 mkci~~GA~DyL~KPl-r~~elkniWQHV~Rk~~~~~~~~ 40 (457)
.+|+..||.|||.||+ ..++|...-+.++++........
T Consensus 97 ~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~~~~~~~~ 136 (144)
T 3kht_A 97 KQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYWLTVNHCQ 136 (144)
T ss_dssp HHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHHHhccCCC
Confidence 4689999999999999 99999999999999988765544
No 4
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=94.38 E-value=0.083 Score=42.53 Aligned_cols=48 Identities=17% Similarity=0.265 Sum_probs=40.3
Q ss_pred CcccCCHHHHHHHHHHHHHhCCCCCChhHHHhhcCCCCCcHHHHHhhhchhhh
Q 012756 216 MKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRM 268 (457)
Q Consensus 216 ~Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl 268 (457)
.+-.||.|-+++|++||+++|.+. +.|-+.|+ +-|..+++.|-++|-+
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G~~W---~~IA~~v~--~RT~~qcr~r~~~~~i 64 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYKDDW---NKVSEHVG--SRTQDECILHFLRLPI 64 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSSSCH---HHHHHHHS--SCCHHHHHHHHTTSCC
T ss_pred cCCCcCHHHHHHHHHHHHHhCCCH---HHHHHHcC--CCCHHHHHHHHHHhcc
Confidence 356899999999999999999444 77888774 7999999999988743
No 5
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=94.17 E-value=0.022 Score=45.25 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=29.9
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 34 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk~~ 34 (457)
.+|+..||.|||.||+..++|...-+.++++..
T Consensus 92 ~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 124 (140)
T 3n53_A 92 VNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQN 124 (140)
T ss_dssp TTTTTCCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhHH
Confidence 578999999999999999999999999988764
No 6
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=94.07 E-value=0.023 Score=45.04 Aligned_cols=37 Identities=19% Similarity=0.368 Sum_probs=31.4
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHHHHhhCC
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGG 38 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk~~~~~~ 38 (457)
.+++..||.|||.||+..++|...-.++.++......
T Consensus 97 ~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~~~ 133 (143)
T 2qv0_A 97 VEAFELEAFDYILKPYQESRIINMLQKLTTAWEQQNN 133 (143)
T ss_dssp HHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHhCCcceEEeCCCCHHHHHHHHHHHHHHHHhccc
Confidence 4688999999999999999999999999888765443
No 7
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=93.49 E-value=0.033 Score=44.15 Aligned_cols=34 Identities=24% Similarity=0.418 Sum_probs=30.3
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHHHHh
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN 35 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk~~~ 35 (457)
.+|+..||.+||.||++.++|...-+.+.+++..
T Consensus 93 ~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~ 126 (143)
T 3jte_A 93 ILAMKEGAFEYLRKPVTAQDLSIAINNAINRKKL 126 (143)
T ss_dssp HHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcceeEeCCCCHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999887653
No 8
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=93.08 E-value=0.031 Score=44.73 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=28.7
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 34 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk~~ 34 (457)
.+|+..||.|||.||+..++|...-..+.++..
T Consensus 91 ~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~~ 123 (136)
T 2qzj_A 91 LNALNSGGDDYLIKPLNLEILYAKVKAILRRMN 123 (136)
T ss_dssp HHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcEEEECCCCHHHHHHHHHHHHHHhh
Confidence 468899999999999999999998888877644
No 9
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=92.95 E-value=0.18 Score=39.13 Aligned_cols=49 Identities=27% Similarity=0.384 Sum_probs=41.1
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCChhHHHhhcCCCCCcHHHHHhhhchhhhhh
Q 012756 217 KVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHR 270 (457)
Q Consensus 217 Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl~~ 270 (457)
+-.||+|-++.|+++|.++|.+. ..|-..| +|-|..+|+.|-++|-..+
T Consensus 9 ~~~WT~eEd~~l~~~~~~~G~~W---~~Ia~~~--~~Rt~~q~k~r~~~~l~~~ 57 (72)
T 2cu7_A 9 SVKWTIEEKELFEQGLAKFGRRW---TKISKLI--GSRTVLQVKSYARQYFKNK 57 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHTCSCH---HHHHHHH--SSSCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCH---HHHHHHc--CCCCHHHHHHHHHHHHHHH
Confidence 45899999999999999999744 6677765 7999999999999886544
No 10
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=92.70 E-value=0.024 Score=46.26 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=29.0
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 34 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk~~ 34 (457)
.+|+..||.|||.||+..++|...-..+.++..
T Consensus 97 ~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 129 (154)
T 3gt7_A 97 VRSLECGADDFITKPCKDVVLASHVKRLLSGVK 129 (154)
T ss_dssp HHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 468999999999999999999998888877653
No 11
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=92.43 E-value=0.057 Score=43.42 Aligned_cols=33 Identities=12% Similarity=0.419 Sum_probs=23.6
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 34 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk~~ 34 (457)
.+++..||.|||.||++.++|...=+.+.++..
T Consensus 93 ~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 125 (141)
T 3cu5_A 93 KAAIKFRAIRYVEKPIDPSEIMDALKQSIQTVL 125 (141)
T ss_dssp ------CCCEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCccEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 468899999999999999999888777776654
No 12
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=92.30 E-value=0.044 Score=43.65 Aligned_cols=34 Identities=18% Similarity=0.456 Sum_probs=29.4
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHHHHh
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN 35 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk~~~ 35 (457)
.+++..||.|||.||+..++|...-++++++...
T Consensus 98 ~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~~ 131 (147)
T 2zay_A 98 AQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLYE 131 (147)
T ss_dssp HHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC-
T ss_pred HHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999988887643
No 13
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=92.30 E-value=0.044 Score=42.94 Aligned_cols=31 Identities=19% Similarity=0.454 Sum_probs=26.9
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 32 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk 32 (457)
.+++..||.|||.||++.++|...-..+.++
T Consensus 91 ~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (136)
T 1mvo_A 91 VLGLELGADDYMTKPFSPREVNARVKAILRR 121 (136)
T ss_dssp HHHHHTTCCEEEESSCCHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 4688999999999999999999887777665
No 14
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=92.28 E-value=0.053 Score=43.91 Aligned_cols=34 Identities=21% Similarity=0.358 Sum_probs=30.4
Q ss_pred hhhhhch-hhHHhhcCCCHHHHHHHHHHHHHHHHh
Q 012756 2 MKCIALG-AVEFLRKPLSEDKLRNLWQHVVHKAFN 35 (457)
Q Consensus 2 mkci~~G-A~DyL~KPlr~~elkniWQHV~Rk~~~ 35 (457)
.+++..| |.|||.||+..++|...-.++++++..
T Consensus 102 ~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~~~ 136 (153)
T 3hv2_A 102 AKAINEGEIYRYLSKPWDDQELLLALRQALEHQHS 136 (153)
T ss_dssp HHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcceEEeCCCCHHHHHHHHHHHHHHhHH
Confidence 4688899 999999999999999999999888765
No 15
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.18 E-value=0.23 Score=38.55 Aligned_cols=52 Identities=27% Similarity=0.328 Sum_probs=40.8
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCCh---hHHHhhcCCCCCcHHHHHhhhchhhhhh
Q 012756 217 KVDWTPELHKKFVQAVEQLGVDQAIP---SRILELMKVEGLTRHNVASHLQKYRMHR 270 (457)
Q Consensus 217 Rl~WT~ELH~rFV~AV~qLG~dkAtP---K~ILelM~V~gLTr~~VkSHLQKYRl~~ 270 (457)
+-.||+|=+++|+++|.++|.+.-.+ +.|-+.| +|-|..+|+.|-|+|-..+
T Consensus 8 ~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~~ 62 (75)
T 2yum_A 8 NQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIKL 62 (75)
T ss_dssp SSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGGG
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHHH
Confidence 34799999999999999999543223 3466665 6899999999999987543
No 16
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=91.33 E-value=0.067 Score=47.49 Aligned_cols=32 Identities=19% Similarity=0.458 Sum_probs=28.5
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 33 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk~ 33 (457)
.+|+..||.|||.||++.++|...-+.+.|+.
T Consensus 111 ~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~ 142 (250)
T 3r0j_A 111 IAGLTLGGDDYVTKPFSLEEVVARLRVILRRA 142 (250)
T ss_dssp HHHHTSTTCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhh
Confidence 47899999999999999999998888887764
No 17
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=91.29 E-value=0.093 Score=41.96 Aligned_cols=33 Identities=30% Similarity=0.489 Sum_probs=27.8
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 34 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk~~ 34 (457)
.+++..||.|||.||+..++|...=+.+.++..
T Consensus 92 ~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 124 (137)
T 3cfy_A 92 VNLIQKGAEDFLEKPINADRLKTSVALHLKRAK 124 (137)
T ss_dssp HHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCccEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 467899999999999999999887777776644
No 18
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=91.22 E-value=0.074 Score=42.98 Aligned_cols=33 Identities=27% Similarity=0.421 Sum_probs=29.2
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 34 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk~~ 34 (457)
.+++..||.|||.||+..++|...-.++.+++.
T Consensus 91 ~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~~ 123 (155)
T 1qkk_A 91 VQAIQDGAYDFIAKPFAADRLVQSARRAEEKRR 123 (155)
T ss_dssp HHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999888887654
No 19
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=91.07 E-value=0.051 Score=43.03 Aligned_cols=34 Identities=21% Similarity=0.406 Sum_probs=27.7
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHHHHh
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN 35 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk~~~ 35 (457)
.+++..||.|||.||++.++|...-+++.++...
T Consensus 91 ~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 124 (142)
T 2qxy_A 91 INSVKAGAVDYILKPFRLDYLLERVKKIISSTPR 124 (142)
T ss_dssp HHHHHHTCSCEEESSCCHHHHHHHHHHHHHC---
T ss_pred HHHHHCCcceeEeCCCCHHHHHHHHHHHHhhccc
Confidence 4688999999999999999999988888776543
No 20
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=90.59 E-value=0.05 Score=42.53 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=26.6
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 32 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk 32 (457)
.+|+..||.+||.||+..++|...-+++.++
T Consensus 90 ~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 120 (134)
T 3f6c_A 90 KHCADAGANGFVSKKEGMNNIIAAIEAAKNG 120 (134)
T ss_dssp HHHHHTTCSEEEEGGGCTHHHHHHHHHHHTT
T ss_pred HHHHHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 4688999999999999999999887776654
No 21
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=90.42 E-value=0.11 Score=44.69 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=29.4
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 34 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk~~ 34 (457)
.+|+..||.|||.||+..++|...-+.+.++..
T Consensus 95 ~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 127 (233)
T 1ys7_A 95 VAGLEAGADDYLVKPFVLAELVARVKALLRRRG 127 (233)
T ss_dssp CTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 578999999999999999999999888887754
No 22
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=90.35 E-value=0.093 Score=44.80 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=28.0
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 33 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk~ 33 (457)
.+++..||.|||.||+..++|...=++++++.
T Consensus 101 ~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 132 (205)
T 1s8n_A 101 ERARDAGAMAYLVKPFSISDLIPAIELAVSRF 132 (205)
T ss_dssp HTTGGGSCEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 46889999999999999999998888887654
No 23
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=90.31 E-value=0.12 Score=43.86 Aligned_cols=33 Identities=27% Similarity=0.481 Sum_probs=28.3
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 34 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk~~ 34 (457)
.+|+..||.|||.||++.++|...=.++.++..
T Consensus 92 ~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 124 (208)
T 1yio_A 92 VRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNA 124 (208)
T ss_dssp HHHHHTTEEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCcEEEeCCCCHHHHHHHHHHHHhhhh
Confidence 578999999999999999999888777776543
No 24
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=90.13 E-value=0.43 Score=39.56 Aligned_cols=56 Identities=21% Similarity=0.342 Sum_probs=39.1
Q ss_pred CCcccCCHHHHHHHHHHHHHhC-CCCCChhHHHh------------------hcCCCCCcHHHHHhhhchhhhhhccc
Q 012756 215 KMKVDWTPELHKKFVQAVEQLG-VDQAIPSRILE------------------LMKVEGLTRHNVASHLQKYRMHRRHI 273 (457)
Q Consensus 215 K~Rl~WT~ELH~rFV~AV~qLG-~dkAtPK~ILe------------------lM~V~gLTr~~VkSHLQKYRl~~k~~ 273 (457)
+..-+|.++|-+.|++|+..+= .... |.+|. .-| ..-|+.+|.||||.-|....+.
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~--k~~ls~~gk~~gRNelIs~yI~~~tG-k~RtrKQVSShiQvlk~~~~~~ 78 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYPPCGRR--KIILSDEGKMYGRNELIARYIKLRTG-KTRTRKQVSSHIQVLARRKSRD 78 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSCSSSCC--CCCHHHHCCCCCTHHHHHHHHHHHHS-CCCCSHHHHHHHHHHHHHHTTC
T ss_pred CcCCcCCHHHHHHHHHHHHHcCCCCcc--ceeecccccccchhHHHHHHHHHHHc-ccCCccchhHHHHHHHHHHhhh
Confidence 4456999999999999999875 2222 22221 111 4569999999999988766553
No 25
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=90.06 E-value=0.047 Score=46.28 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=28.5
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 34 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk~~ 34 (457)
.+|+..||.|||.||+..++|...-+.+.++..
T Consensus 95 ~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~~ 127 (184)
T 3rqi_A 95 VQAVKDGADNYLAKPANVESILAALQTNASEVQ 127 (184)
T ss_dssp HHHHHHTCSEEEESSCCHHHHHHHTSTTHHHHH
T ss_pred HHHHHhCHHHheeCCCCHHHHHHHHHHHHHHhh
Confidence 468999999999999999999988887776654
No 26
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=89.95 E-value=0.11 Score=41.93 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=28.8
Q ss_pred hhhhhch-hhHHhhcCCCHHHHHHHHHHHHHHHH
Q 012756 2 MKCIALG-AVEFLRKPLSEDKLRNLWQHVVHKAF 34 (457)
Q Consensus 2 mkci~~G-A~DyL~KPlr~~elkniWQHV~Rk~~ 34 (457)
.+++..| |.+||.||++.++|...-+.++++..
T Consensus 92 ~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~ 125 (151)
T 3kcn_A 92 MEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQYD 125 (151)
T ss_dssp HHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 4688899 89999999999999999888887654
No 27
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=89.54 E-value=0.079 Score=42.64 Aligned_cols=31 Identities=16% Similarity=0.188 Sum_probs=26.3
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 32 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk 32 (457)
.+++..||.|||.||++.++|...-+++.++
T Consensus 94 ~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~ 124 (154)
T 2qsj_A 94 RAALEAGADGFIPKSADPQVLIHAVSLILEG 124 (154)
T ss_dssp HHHHHTTCCBBCCTTSCHHHHHHHHHHHHTT
T ss_pred HHHHHccCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 4688999999999999999998877766654
No 28
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=89.52 E-value=0.1 Score=44.27 Aligned_cols=32 Identities=13% Similarity=0.201 Sum_probs=26.4
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 33 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk~ 33 (457)
.+|+..||.|||.||++.++|...=..+.++.
T Consensus 95 ~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 126 (196)
T 1qo0_D 95 SQIIELECHGVITQPLDAHRVLPVLVSARRIS 126 (196)
T ss_dssp HHHHHHTCSEEEESSCCGGGHHHHHHHHHHHH
T ss_pred HHHHHcCCCeeEecCcCHHHHHHHHHHHHHHH
Confidence 46889999999999999999987776665543
No 29
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=89.29 E-value=0.36 Score=46.59 Aligned_cols=51 Identities=25% Similarity=0.382 Sum_probs=43.5
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCCCCChhHHHhhcCCCCCcHHHHHhhhchhhhh
Q 012756 214 KKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 269 (457)
Q Consensus 214 kK~Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl~ 269 (457)
.|..-+||+|=++.|++|+...|-+. ..|-++ |.+=|..+|++|-++||..
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYGKDW---~~IAk~--VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYGRDF---QAISDV--IGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHSSCH---HHHHHH--HSSCCHHHHHHHHHHTTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHCcCH---HHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 35567999999999999999999665 677777 5689999999999999865
No 30
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=89.01 E-value=0.15 Score=41.16 Aligned_cols=33 Identities=21% Similarity=0.427 Sum_probs=28.4
Q ss_pred hhhhhch-hhHHhhcCCCHHHHHHHHHHHHHHHH
Q 012756 2 MKCIALG-AVEFLRKPLSEDKLRNLWQHVVHKAF 34 (457)
Q Consensus 2 mkci~~G-A~DyL~KPlr~~elkniWQHV~Rk~~ 34 (457)
.+++..| |.+||.||++.++|...-.++.++..
T Consensus 95 ~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~~~ 128 (154)
T 2rjn_A 95 IDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLAF 128 (154)
T ss_dssp HHHHHTTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhccchheeeeCCCCHHHHHHHHHHHHHHHH
Confidence 4677887 99999999999999999888887654
No 31
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=88.31 E-value=0.53 Score=49.30 Aligned_cols=51 Identities=25% Similarity=0.345 Sum_probs=43.5
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCCCCChhHHHhhcCCCCCcHHHHHhhhchhhhhh
Q 012756 215 KMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHR 270 (457)
Q Consensus 215 K~Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl~~ 270 (457)
|..-+||+|-|..|++||.+.|-+. +.|-+.++ .=|..||++|.++||..+
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGkdw---~~IA~~Vg--TKT~~Qvk~fy~~~kkr~ 428 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGRDF---QAISDVIG--NKSVVQVKNFFVNYRRRF 428 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTTCH---HHHHHHHS--SCCHHHHHHHHHHTTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcCH---HHHHHHhC--CCCHHHHHHHHHHHHHHh
Confidence 5578999999999999999999665 77888865 459999999999998754
No 32
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=88.19 E-value=0.14 Score=43.83 Aligned_cols=32 Identities=22% Similarity=0.433 Sum_probs=28.0
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 33 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk~ 33 (457)
.+|+..||.|||.||++.++|...-+.+.++.
T Consensus 90 ~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 121 (225)
T 1kgs_A 90 VKGLNMGADDYLPKPFDLRELIARVRALIRRK 121 (225)
T ss_dssp HHTCCCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCccEEEeCCCCHHHHHHHHHHHHhhc
Confidence 46889999999999999999998888877764
No 33
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=88.14 E-value=0.14 Score=43.80 Aligned_cols=30 Identities=17% Similarity=0.283 Sum_probs=25.9
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVH 31 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~R 31 (457)
.+|+..||.|||.||++.++|...-+.+.+
T Consensus 95 ~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 124 (215)
T 1a04_A 95 VTALKRGADGYLLKDMEPEDLLKALHQAAA 124 (215)
T ss_dssp HHHHHTTCSEEEETTCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCcEEEeCCCCHHHHHHHHHHHHc
Confidence 468899999999999999999887766655
No 34
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=88.06 E-value=0.62 Score=35.00 Aligned_cols=47 Identities=21% Similarity=0.326 Sum_probs=38.9
Q ss_pred cccCCHHHHHHHHHHHHHhCC-CCCChhHHHhhcCCCCCcHHHHHhhhchhhh
Q 012756 217 KVDWTPELHKKFVQAVEQLGV-DQAIPSRILELMKVEGLTRHNVASHLQKYRM 268 (457)
Q Consensus 217 Rl~WT~ELH~rFV~AV~qLG~-dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl 268 (457)
|-.||+|-.++|++||.++|. .. +.|-+.| ++-|..+++.|-++|-+
T Consensus 8 ~~~WT~eED~~L~~~v~~~G~~~W---~~Ia~~~--~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 8 DPSWTAQEEMALLEAVMDCGFGNW---QDVANQM--CTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CSSSCHHHHHHHHHHHHHTCTTCH---HHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCcH---HHHHHHh--CCCCHHHHHHHHHHHcc
Confidence 447999999999999999994 44 6777777 68999999999887743
No 35
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=87.86 E-value=0.16 Score=49.60 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=29.1
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 34 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk~~ 34 (457)
.+|++.||.|||.||++.++|...-++++++..
T Consensus 88 ~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 120 (368)
T 3dzd_A 88 VKAIKKGAYEFLEKPFSVERFLLTIKHAFEEYS 120 (368)
T ss_dssp HHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHS
T ss_pred HHHHhcCcceEEeCCCCHHHHHHHHHHHHHHhh
Confidence 478999999999999999999998888877653
No 36
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=87.31 E-value=0.1 Score=42.05 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=26.1
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 32 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk 32 (457)
.+++..||.|||.||++.++|...-++++++
T Consensus 95 ~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~ 125 (153)
T 3cz5_A 95 LKAFEAGASGYVTKSSDPAELVQAIEAILAG 125 (153)
T ss_dssp HHHHHTTCSEEEETTSCTTHHHHHHHHHTTT
T ss_pred HHHHHCCCcEEEecCCCHHHHHHHHHHHHhC
Confidence 4688999999999999999998877666543
No 37
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=86.30 E-value=2.2 Score=33.98 Aligned_cols=49 Identities=12% Similarity=0.126 Sum_probs=38.1
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCChhHHHhhc-CCCCCcHHHHHhhhchhh
Q 012756 217 KVDWTPELHKKFVQAVEQLGVDQAIPSRILELM-KVEGLTRHNVASHLQKYR 267 (457)
Q Consensus 217 Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM-~V~gLTr~~VkSHLQKYR 267 (457)
+-.||.+-.++|++||.++|.+ +|.+--.+- -|+|-|-.+|+.|-+.+.
T Consensus 18 ~~~WT~eEd~~L~~al~~~g~~--~~~rW~~IA~~vpGRT~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYPRG--SSDCWDKIARCVPSKSKEDCIARYKLLV 67 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSCSS--SHHHHHHHGGGCSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC--CCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3469999999999999999953 676644332 257999999999977654
No 38
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=86.21 E-value=0.22 Score=42.75 Aligned_cols=31 Identities=19% Similarity=0.398 Sum_probs=26.4
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 32 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk 32 (457)
.+++..||.|||.||++.++|...=+.+.++
T Consensus 87 ~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 117 (220)
T 1p2f_A 87 LKGFEAGADDYVTKPFNPEILLARVKRFLER 117 (220)
T ss_dssp HHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 4688999999999999999998877666654
No 39
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=86.18 E-value=0.13 Score=46.28 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=24.8
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVH 31 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~R 31 (457)
.+|+..||.|||.||+..++|...-..+.+
T Consensus 124 ~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~ 153 (249)
T 3q9s_A 124 VRLLGLGADDYLIKPFHPDELLARVKVQLR 153 (249)
T ss_dssp HHHHHHTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred HHHHHCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 478999999999999999999776555443
No 40
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=85.81 E-value=0.25 Score=48.38 Aligned_cols=32 Identities=19% Similarity=0.424 Sum_probs=28.3
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 33 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk~ 33 (457)
.+|++.||.|||.||+..++|...-.++.+++
T Consensus 88 ~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 119 (387)
T 1ny5_A 88 VEAMKMGAYDFLTKPCMLEEIELTINKAIEHR 119 (387)
T ss_dssp HHHHTTTCCEEEEESCCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCceEEecCCCCHHHHHHHHHHHHHHH
Confidence 47899999999999999999998888887654
No 41
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=85.66 E-value=0.26 Score=47.04 Aligned_cols=33 Identities=27% Similarity=0.546 Sum_probs=27.2
Q ss_pred hhhhhchhhHHhhcCC-CHHHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPL-SEDKLRNLWQHVVHKAF 34 (457)
Q Consensus 2 mkci~~GA~DyL~KPl-r~~elkniWQHV~Rk~~ 34 (457)
.+|+..||.|||.||+ ..++|...-+.+.++..
T Consensus 93 ~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~~~~ 126 (394)
T 3eq2_A 93 VEALRLGAADYLIKPLEDLAVLEHSVRRALDRAY 126 (394)
T ss_dssp HHHHHHTCSEECCSSCSCTHHHHHHHHHHHHHHH
T ss_pred HHHHhcChhhEEECCCChHHHHHHHHHHHHhhhh
Confidence 4789999999999999 57888887777776543
No 42
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=85.60 E-value=0.18 Score=43.48 Aligned_cols=31 Identities=26% Similarity=0.438 Sum_probs=26.0
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 32 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk 32 (457)
.+|+..||.|||.||++.++|...=++++++
T Consensus 91 ~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (230)
T 2oqr_A 91 VVGLELGADDYVTKPYSARELIARIRAVLRR 121 (230)
T ss_dssp HHHHHHCCSCCCCSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 4688999999999999999998776666543
No 43
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=84.38 E-value=0.33 Score=46.98 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=27.3
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 33 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk~ 33 (457)
.+|+..||.|||.||++.++|...=+.+.+..
T Consensus 91 ~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~ 122 (459)
T 1w25_A 91 IQGLESGASDFLTKPIDDVMLFARVRSLTRFK 122 (459)
T ss_dssp HHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 47899999999999999999988777776654
No 44
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=84.08 E-value=0.38 Score=38.07 Aligned_cols=32 Identities=25% Similarity=0.322 Sum_probs=24.9
Q ss_pred hhhhhc-hhhHHhhcCCCHHHHHHHHHHHHHHH
Q 012756 2 MKCIAL-GAVEFLRKPLSEDKLRNLWQHVVHKA 33 (457)
Q Consensus 2 mkci~~-GA~DyL~KPlr~~elkniWQHV~Rk~ 33 (457)
.+++.. ||.|||.||++.++|...=..+.++.
T Consensus 88 ~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 120 (139)
T 2jk1_A 88 MAAINDAGIHQFLTKPWHPEQLLSSARNAARMF 120 (139)
T ss_dssp HHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhchhhhccCCCCHHHHHHHHHHHHHHH
Confidence 356665 59999999999999988766666554
No 45
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=83.80 E-value=0.27 Score=42.81 Aligned_cols=30 Identities=7% Similarity=-0.104 Sum_probs=24.6
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVH 31 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~R 31 (457)
.+|+..||.|||.||+..++|...=..+.+
T Consensus 99 ~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 128 (225)
T 3klo_A 99 LLFKWNNLAGVFYIDDDMDTLIKGMSKILQ 128 (225)
T ss_dssp HHTTSTTEEEEEETTCCHHHHHHHHHHHHT
T ss_pred HHHHHhCCCEEEecCCCHHHHHHHHHHHHC
Confidence 367889999999999999999876555554
No 46
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=83.70 E-value=0.2 Score=43.80 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=27.5
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 33 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk~ 33 (457)
.+|+..||.|||.||++.++|...=+.+.++.
T Consensus 91 ~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 122 (225)
T 3c3w_A 91 LDAILAGASGYVVKDIKGMELARAVKDVGAGR 122 (225)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHCCCCEEEECCCCHHHHHHHHHHHHcCC
Confidence 46889999999999999999998877777653
No 47
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=83.64 E-value=0.32 Score=47.09 Aligned_cols=32 Identities=22% Similarity=0.437 Sum_probs=28.1
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 33 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~Rk~ 33 (457)
.+|+..||.|||.||++.++|...-+.+.++.
T Consensus 98 ~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~ 129 (400)
T 3sy8_A 98 IECLGLNFLGDLGKPFSLERITALLTRYNARR 129 (400)
T ss_dssp HHTTTCEEEEECCSSCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCeeccCcCCCcCHHHHHHHHHHHHHhh
Confidence 46889999999999999999999888877654
No 48
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=83.55 E-value=2 Score=33.09 Aligned_cols=49 Identities=20% Similarity=0.267 Sum_probs=38.9
Q ss_pred cccCCHHHHHHHHHHHHHhCC-CCCChhHHHhhcCCCCCcHHHHHhhhchhhhhhc
Q 012756 217 KVDWTPELHKKFVQAVEQLGV-DQAIPSRILELMKVEGLTRHNVASHLQKYRMHRR 271 (457)
Q Consensus 217 Rl~WT~ELH~rFV~AV~qLG~-dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl~~k 271 (457)
|-.||+|--++++++|+++|. .. +.|.+.+.+.|-|-.+++- +||..++
T Consensus 11 k~~WT~eED~~L~~~V~~~G~~~W---~~Ia~~~~~~~Rt~~qcr~---Rw~nl~k 60 (64)
T 3sjm_A 11 KQKWTVEESEWVKAGVQKYGEGNW---AAISKNYPFVNRTAVMIKD---RWRTMKR 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCH---HHHHHHSCCSSCCHHHHHH---HHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCCch---HHHHhhcCCCCCCHHHHHH---HHHHHhc
Confidence 557999999999999999994 44 6788888878888888764 5555443
No 49
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=83.50 E-value=2.3 Score=32.49 Aligned_cols=59 Identities=22% Similarity=0.294 Sum_probs=45.0
Q ss_pred cCCCCcccCCHHHHHHHHHHHHHhCC-CCCChhHHHhhcCCCCCcHHHHHhhhchhhhhhcccCCc
Q 012756 212 NRKKMKVDWTPELHKKFVQAVEQLGV-DQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPK 276 (457)
Q Consensus 212 ~~kK~Rl~WT~ELH~rFV~AV~qLG~-dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl~~k~~l~~ 276 (457)
..++.|-.||+|--+..+++|+++|. .. +.|.+.|+..|-|-.+++-+ |+.+++..+.+
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W---~~Ia~~~~~~~Rt~~qcr~R---w~~~l~p~i~k 64 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNW---SKILLHYKFNNRTSVMLKDR---WRTMKKLKLIS 64 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCH---HHHHHHSCCSSCCHHHHHHH---HHHHHHTSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcH---HHHHHHcCcCCCCHHHHHHH---HHHHcCCCCCC
Confidence 34567889999999999999999994 44 78888887658888888754 55555554433
No 50
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=83.38 E-value=0.16 Score=40.33 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=22.7
Q ss_pred hhhchhhHHhhcCCCHHHHHHHHHHHHHH
Q 012756 4 CIALGAVEFLRKPLSEDKLRNLWQHVVHK 32 (457)
Q Consensus 4 ci~~GA~DyL~KPlr~~elkniWQHV~Rk 32 (457)
+...||.|||.||++.++|...-..+.++
T Consensus 95 ~~~~~~~~~l~KP~~~~~L~~~i~~~~~~ 123 (138)
T 3c3m_A 95 EYGSYIEDYILKPTTHHQLYEAIEHVLAR 123 (138)
T ss_dssp HTTTTCSEEEECCCHHHHHHHHHHHHHSC
T ss_pred HhhcCHhheEeCCCCHHHHHHHHHHHHHH
Confidence 34456789999999999998877776654
No 51
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=83.16 E-value=1.6 Score=32.68 Aligned_cols=46 Identities=20% Similarity=0.336 Sum_probs=38.0
Q ss_pred cCCHHHHHHHHHHHHHhC-CCCCChhHHHhhcCCCCCcHHHHHhhhchhhh
Q 012756 219 DWTPELHKKFVQAVEQLG-VDQAIPSRILELMKVEGLTRHNVASHLQKYRM 268 (457)
Q Consensus 219 ~WT~ELH~rFV~AV~qLG-~dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl 268 (457)
.||+|-.+++++||++.| ... +.|-+.|+. +-|..+++.|-++|-+
T Consensus 11 ~WT~eED~~L~~~v~~~G~~~W---~~IA~~~~~-~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 11 NWGADEELLLIDACETLGLGNW---ADIADYVGN-ARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCH---HHHHHHHCS-SCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHCcCCH---HHHHHHHCC-CCCHHHHHHHHHHHcc
Confidence 699999999999999999 444 677777743 7899999999887754
No 52
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=82.94 E-value=0.52 Score=43.63 Aligned_cols=30 Identities=20% Similarity=0.098 Sum_probs=25.2
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHVVH 31 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV~R 31 (457)
.+|+..||.|||.||+..++|......+.+
T Consensus 109 ~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~~ 138 (358)
T 3bre_A 109 SAAFAAGANDYLVKLPDAIELVARIRYHSR 138 (358)
T ss_dssp HHHHHTTCSEEEESCCCHHHHHHHHHHHHH
T ss_pred HHHHhcChheEeeccCCHHHHHHHHHHHHH
Confidence 468999999999999999998877666543
No 53
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=82.11 E-value=0.19 Score=43.24 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=24.2
Q ss_pred hhhhhchhhHHhhcCC-CHHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPL-SEDKLRNLWQHVV 30 (457)
Q Consensus 2 mkci~~GA~DyL~KPl-r~~elkniWQHV~ 30 (457)
.+|+..||.|||.||+ +.++|...=+.+.
T Consensus 84 ~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~ 113 (223)
T 2hqr_A 84 VHAFEQGADDYIAKPYRSIKALVARIEARL 113 (223)
T ss_dssp HHHHHHTCSEEEETTCSCTHHHHHHHHHHT
T ss_pred HHHHHcCCCEEEECCCCCHHHHHHHHHHHh
Confidence 4688999999999999 9999987655544
No 54
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=79.74 E-value=0.24 Score=43.52 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=23.4
Q ss_pred hhhhhchhhHHhhcCCCHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLRNLWQHV 29 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elkniWQHV 29 (457)
.+++..||.|||.||+..++|...=+.+
T Consensus 92 ~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~ 119 (238)
T 2gwr_A 92 VLGLESGADDYIMKPFKPKELVARVRAR 119 (238)
T ss_dssp HHHHHTTCCEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHCCCCEEEeCCCCHHHHHHHHHHH
Confidence 4688999999999999999997655444
No 55
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.43 E-value=5.2 Score=30.17 Aligned_cols=51 Identities=14% Similarity=0.175 Sum_probs=37.4
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCCCCChhHHHhhcCCCCCcHHHHHhhhchhhhhhc
Q 012756 213 RKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRR 271 (457)
Q Consensus 213 ~kK~Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl~~k 271 (457)
.++..-.||+|=|+.|++|+.+.|-+- ..|-.+ |++-|..+|.. .|-+.++
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~gk~w---~~Ia~~--l~~rt~~~~v~---~Yy~~Kk 58 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHPKNF---GLIASY--LERKSVPDCVL---YYYLTKK 58 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHSTTCH---HHHHHH--CTTSCHHHHHH---HHHHHTC
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCCCH---HHHHHH--cCCCCHHHHHH---HHHHhcC
Confidence 346678999999999999999999432 566655 46888888764 4555444
No 56
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=76.62 E-value=3.8 Score=29.41 Aligned_cols=45 Identities=31% Similarity=0.355 Sum_probs=36.3
Q ss_pred cccCCHHHHHHHHHHHHHhCC-CCCChhHHHhhcCCCCCcHHHHHhhhchh
Q 012756 217 KVDWTPELHKKFVQAVEQLGV-DQAIPSRILELMKVEGLTRHNVASHLQKY 266 (457)
Q Consensus 217 Rl~WT~ELH~rFV~AV~qLG~-dkAtPK~ILelM~V~gLTr~~VkSHLQKY 266 (457)
|-.||+|-.++++++|.++|. .- +.|-+.| +|-|..+++.|-++|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W---~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDW---KVIANYL--PNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCH---HHHHHTS--TTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCH---HHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999995 43 6777776 588999998776554
No 57
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=76.42 E-value=5 Score=29.67 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=37.0
Q ss_pred CCcccCCHHHHHHHHHHHHHhCC-CCCChhHHHhhcCCCCCcHHHHHhhhchh
Q 012756 215 KMKVDWTPELHKKFVQAVEQLGV-DQAIPSRILELMKVEGLTRHNVASHLQKY 266 (457)
Q Consensus 215 K~Rl~WT~ELH~rFV~AV~qLG~-dkAtPK~ILelM~V~gLTr~~VkSHLQKY 266 (457)
..|-.||+|-.++++++|.++|. .. ..|-+.| +|-|..+++.|-++|
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W---~~Ia~~~--~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDW---KFLASHF--PNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCH---HHHHHHC--SSSCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCH---HHHHHHc--cCCCHHHHHHHHHHH
Confidence 34568999999999999999994 44 6677776 588888888766544
No 58
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=73.91 E-value=5.6 Score=31.50 Aligned_cols=44 Identities=18% Similarity=0.402 Sum_probs=35.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCChhH---HHhhcCCCCCcHHHHHhhhchhh
Q 012756 219 DWTPELHKKFVQAVEQLGVDQAIPSR---ILELMKVEGLTRHNVASHLQKYR 267 (457)
Q Consensus 219 ~WT~ELH~rFV~AV~qLG~dkAtPK~---ILelM~V~gLTr~~VkSHLQKYR 267 (457)
.||.|=+++|.+|+.+++.+ ||.+ |-+.| |-|-.+|+.|-+++.
T Consensus 10 ~WT~eE~k~fe~al~~~p~~--t~~RW~~IA~~l---gRt~~eV~~~y~~L~ 56 (72)
T 2cqq_A 10 EWTEEDLSQLTRSMVKFPGG--TPGRWEKIAHEL---GRSVTDVTTKAKQLK 56 (72)
T ss_dssp CCCHHHHHHHHHHHHHSCTT--CTTHHHHHHHHH---TSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCC--CCcHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 69999999999999999843 4554 66666 689999999877654
No 59
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.11 E-value=7.1 Score=29.80 Aligned_cols=52 Identities=19% Similarity=0.329 Sum_probs=36.4
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCCCCChhHHHhhcCCCCCcHHHHHhhhchhhhhhcc
Q 012756 214 KKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRH 272 (457)
Q Consensus 214 kK~Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl~~k~ 272 (457)
+..+-.||+|=|+.|.+|+.+.|-+- ..|-+.| |+.-|..+|. +-|-+.++.
T Consensus 6 ~~~~~~WT~eE~~~Fe~~l~~yGKdf---~~I~~~~-v~~Kt~~~~v---~fYY~wKkt 57 (63)
T 2yqk_A 6 SGIEKCWTEDEVKRFVKGLRQYGKNF---FRIRKEL-LPNKETGELI---TFYYYWKKT 57 (63)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHTCSCH---HHHHHHS-CTTSCHHHHH---HHHHHHHCS
T ss_pred CcCCCCcCHHHHHHHHHHHHHhCccH---HHHHHHH-cCCCcHHHHH---HHHhcccCC
Confidence 34467999999999999999999542 4555533 5677777764 455555443
No 60
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=70.84 E-value=6.5 Score=28.25 Aligned_cols=45 Identities=20% Similarity=0.329 Sum_probs=35.4
Q ss_pred cccCCHHHHHHHHHHHHHhCC-CCCChhHHHhhcCCCCCcHHHHHhhhchh
Q 012756 217 KVDWTPELHKKFVQAVEQLGV-DQAIPSRILELMKVEGLTRHNVASHLQKY 266 (457)
Q Consensus 217 Rl~WT~ELH~rFV~AV~qLG~-dkAtPK~ILelM~V~gLTr~~VkSHLQKY 266 (457)
|-.||+|-.++++++|.++|. .- ..|-+.| +|-|..+++.|-++|
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W---~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRW---SVIAKHL--KGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCH---HHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcChH---HHHHHHc--CCCCHHHHHHHHHHH
Confidence 347999999999999999994 23 5666665 588888888776655
No 61
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=67.26 E-value=12 Score=32.67 Aligned_cols=54 Identities=19% Similarity=0.234 Sum_probs=42.5
Q ss_pred cCCCCcccCCHHHHHHHHHHHHHhCC-CCCChhHHHhhc--CCCCCcHHHHHhhhchhhhhhc
Q 012756 212 NRKKMKVDWTPELHKKFVQAVEQLGV-DQAIPSRILELM--KVEGLTRHNVASHLQKYRMHRR 271 (457)
Q Consensus 212 ~~kK~Rl~WT~ELH~rFV~AV~qLG~-dkAtPK~ILelM--~V~gLTr~~VkSHLQKYRl~~k 271 (457)
..+|.|-.||.|--+..+++|+++|. .. +.|++.+ ..++-|.-+++ .|||..++
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W---~~I~~~~~~~~~~RT~vdlK---dRWrnllk 82 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRW---RDVKFRAFENVHHRTYVDLK---DKWKTLVH 82 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCH---HHHHHHHHSSSCCCCHHHHH---HHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCh---HHHHHHhccccCCCCHHHHH---HHHHHHHh
Confidence 45677889999999999999999995 55 5777754 34788999988 46776664
No 62
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.33 E-value=11 Score=28.64 Aligned_cols=47 Identities=17% Similarity=0.204 Sum_probs=36.4
Q ss_pred CCcccCCHHHHHHHHHHHHHhC-CCCCChhHHHhhcCCCCCcHHHHHhhhchh
Q 012756 215 KMKVDWTPELHKKFVQAVEQLG-VDQAIPSRILELMKVEGLTRHNVASHLQKY 266 (457)
Q Consensus 215 K~Rl~WT~ELH~rFV~AV~qLG-~dkAtPK~ILelM~V~gLTr~~VkSHLQKY 266 (457)
..|=.||+|-.++++++|.++| ... +.|-..|+ |-|..+++-|-..|
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W---~~Ia~~l~--~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQW---SRIASLLH--RKSAKQCKARWYEW 54 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCH---HHHHHHST--TCCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCH---HHHHHHhc--CCCHHHHHHHHHHH
Confidence 3355899999999999999999 343 67878875 78888887654443
No 63
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=65.57 E-value=6.2 Score=32.77 Aligned_cols=47 Identities=26% Similarity=0.434 Sum_probs=37.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCChhH---HHhhcCCCCCcHHHHHhhhchhhhh
Q 012756 219 DWTPELHKKFVQAVEQLGVDQAIPSR---ILELMKVEGLTRHNVASHLQKYRMH 269 (457)
Q Consensus 219 ~WT~ELH~rFV~AV~qLG~dkAtPK~---ILelM~V~gLTr~~VkSHLQKYRl~ 269 (457)
.||.|=.+.|++|+.++|.+ +|.+ |-+.| +|-|-.+|+.|-+++...
T Consensus 10 ~WT~eEd~~L~~al~~~~~~--~~~rW~~IA~~v--pGRT~~q~k~ry~~l~~d 59 (93)
T 2cjj_A 10 PWSAKENKAFERALAVYDKD--TPDRWANVARAV--EGRTPEEVKKHYEILVED 59 (93)
T ss_dssp SCCHHHHHHHHHHHHHSCTT--CTTHHHHHHHHS--TTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCC--CCchHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 69999999999999999854 4554 55554 699999999998877543
No 64
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=62.43 E-value=14 Score=26.73 Aligned_cols=45 Identities=22% Similarity=0.268 Sum_probs=35.8
Q ss_pred cccCCHHHHHHHHHHHHHhCC-CCCChhHHHhhcCCCCCcHHHHHhhhc
Q 012756 217 KVDWTPELHKKFVQAVEQLGV-DQAIPSRILELMKVEGLTRHNVASHLQ 264 (457)
Q Consensus 217 Rl~WT~ELH~rFV~AV~qLG~-dkAtPK~ILelM~V~gLTr~~VkSHLQ 264 (457)
|-.||+|-.+..+++|+.+|. .- +.|.+.|+..|-|-.+++-+-.
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W---~~Ia~~~~~~~Rt~~qcr~Rw~ 47 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNW---SKILLHYKFNNRTSVMLKDRWR 47 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCH---HHHHHHSCCSSCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCH---HHHHHHcCCCCCCHHHHHHHHH
Confidence 447999999999999999994 44 7788888655778888876533
No 65
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=61.16 E-value=1.7 Score=39.51 Aligned_cols=19 Identities=11% Similarity=0.277 Sum_probs=16.2
Q ss_pred hhhhhchhhHHhhcCCCHH
Q 012756 2 MKCIALGAVEFLRKPLSED 20 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~ 20 (457)
.+|++.||.|||.||++..
T Consensus 90 ~~a~~~Ga~dyl~Kp~~~~ 108 (259)
T 3luf_A 90 EAWLEAGVLDYVMKDSRHS 108 (259)
T ss_dssp HHHHHTTCCEEEECSSHHH
T ss_pred HHHHHCCCcEEEeCCchhH
Confidence 4689999999999997654
No 66
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=60.83 E-value=12 Score=31.86 Aligned_cols=54 Identities=17% Similarity=0.216 Sum_probs=42.5
Q ss_pred cCCCCcccCCHHHHHHHHHHHHHhCC-CCCChhHHHhhcC--CCCCcHHHHHhhhchhhhhhc
Q 012756 212 NRKKMKVDWTPELHKKFVQAVEQLGV-DQAIPSRILELMK--VEGLTRHNVASHLQKYRMHRR 271 (457)
Q Consensus 212 ~~kK~Rl~WT~ELH~rFV~AV~qLG~-dkAtPK~ILelM~--V~gLTr~~VkSHLQKYRl~~k 271 (457)
..++.|-.||+|--+..+++|+++|. .. +.|++.+. .++-|.-++|. |||..++
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W---~~I~~~~~~~f~~RT~v~lKd---rWrnllk 64 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRW---RDVKLCAFEDADHRTYVDLKD---KWKTLVH 64 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSH---HHHHSSSSSSTTCCCHHHHHH---HHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCCh---HHHHHHhccccCCCCHHHHHH---HHHHHHh
Confidence 45677889999999999999999995 55 67888663 47889888885 5666554
No 67
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.86 E-value=15 Score=27.66 Aligned_cols=45 Identities=18% Similarity=0.326 Sum_probs=36.5
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCChhHHHhhcCCCCCcHHHHHhhhchhh
Q 012756 217 KVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYR 267 (457)
Q Consensus 217 Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKYR 267 (457)
+-.||.|=.+++++++.++|... ..|-++| |-|-.+|+.|-+.|-
T Consensus 9 k~~WT~eED~~L~~~~~~~g~~W---~~Ia~~~---gRt~~qcr~Rw~~~l 53 (66)
T 2din_A 9 KTEWSREEEEKLLHLAKLMPTQW---RTIAPII---GRTAAQCLEHYEFLL 53 (66)
T ss_dssp CCCCCHHHHHHHHHHHHHCTTCH---HHHHHHH---SSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCH---HHHhccc---CcCHHHHHHHHHHHh
Confidence 45799999999999999999644 6677755 589999998876664
No 68
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=56.11 E-value=3.9 Score=39.68 Aligned_cols=17 Identities=35% Similarity=0.849 Sum_probs=15.5
Q ss_pred hhhhhchhhHHhhcCCC
Q 012756 2 MKCIALGAVEFLRKPLS 18 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr 18 (457)
++++..||.|||.||+.
T Consensus 94 ~~al~~Ga~d~l~KP~~ 110 (349)
T 1a2o_A 94 LRALELGAIDFVTKPQL 110 (349)
T ss_dssp HHHHHHTCCEEEECSSS
T ss_pred HHHHhCCceEEEECCCC
Confidence 47889999999999997
No 69
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=60.85 E-value=2.4 Score=34.38 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=37.0
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCChhHHHhhcCCCCCcHHHHHhhhchhhh
Q 012756 218 VDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRM 268 (457)
Q Consensus 218 l~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl 268 (457)
=.||+|-.+.|+++|..+|.+. ..|-.. ++|-|..+|+.|-+.|..
T Consensus 17 ~~WT~eEd~~l~~~~~~~G~~W---~~IA~~--l~gRt~~q~k~r~~~~lr 62 (89)
T 2ltp_A 17 QGWTEEEMGTAKKGLLEHGRNW---SAIARM--VGSKTVSQCKNFYFNYKK 62 (89)
Confidence 3799999999999999999654 445555 468999999999776654
No 70
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=52.59 E-value=16 Score=29.81 Aligned_cols=47 Identities=15% Similarity=0.265 Sum_probs=37.8
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCChhHHHhhcCCCCCcHHHHHhhhchhhh
Q 012756 217 KVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRM 268 (457)
Q Consensus 217 Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl 268 (457)
+-.||+|-...++++|.++|..- ..|-..| +|-|..+|+.|-..+..
T Consensus 53 ~~~WT~eEd~~L~~~~~~~G~~W---~~Ia~~l--~gRt~~~~k~rw~~l~r 99 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEYGPKW---NKISKFL--KNRSDNNIRNRWMMIAR 99 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHTCSCH---HHHHHHH--SSSCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhCcCH---HHHHHHC--CCCCHHHHHHHHHHHHh
Confidence 34899999999999999999643 5677765 79999999988665443
No 71
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=51.65 E-value=13 Score=29.82 Aligned_cols=46 Identities=15% Similarity=0.178 Sum_probs=35.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCChhHHHhhc-CCCCCcHHHHHhhhchh
Q 012756 219 DWTPELHKKFVQAVEQLGVDQAIPSRILELM-KVEGLTRHNVASHLQKY 266 (457)
Q Consensus 219 ~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM-~V~gLTr~~VkSHLQKY 266 (457)
.||.+=.++|.+|+..++.+ +|.+-..+- -|+|=|.++|..|-+..
T Consensus 10 ~WT~eE~k~fe~ALa~~~~~--tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLPKH--KPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp CCCHHHHHHHHHHHHHSCSS--SSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHCCCC--CccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 59999999999999998743 677644322 26789999998775544
No 72
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=50.11 E-value=18 Score=29.06 Aligned_cols=43 Identities=30% Similarity=0.472 Sum_probs=35.0
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCChhHHHhhcCCCCCcHHHHHhhhc
Q 012756 217 KVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQ 264 (457)
Q Consensus 217 Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQ 264 (457)
+-.||+|=.+.++++|.++|..- ..|-+. ++|-|..+|+.|-.
T Consensus 56 ~~~Wt~eEd~~L~~~~~~~G~~W---~~Ia~~--l~gRt~~~~k~rw~ 98 (105)
T 1gv2_A 56 KTSWTEEEDRIIYQAHKRLGNRW---AEIAKL--LPGRTDNAIKNHWN 98 (105)
T ss_dssp CCCCCHHHHHHHHHHHHHHSSCH---HHHHTT--CTTCCHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhCCCH---HHHHHH--cCCCCHHHHHHHHH
Confidence 45799999999999999999543 466665 47999999998754
No 73
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=49.75 E-value=32 Score=26.79 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=35.9
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCCCCChhHHHhhcCCCCCcHHHHHhhhchhhhhhcc
Q 012756 215 KMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRH 272 (457)
Q Consensus 215 K~Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl~~k~ 272 (457)
+..-.||+|=++.|.+|+...|-+- ..|-..| |++-|..+|..+ |-+.++.
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yGKdf---~~I~~~~-v~~Kt~~~~v~f---YY~wKkt 56 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYGKDF---NDIRQDF-LPWKSLTSIIEY---YYMWKTT 56 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTCSCH---HHHHHTT-CSSSCHHHHHHH---HHHHHTC
T ss_pred cCCCCCCHHHHHHHHHHHHHhCccH---HHHHHHH-cCCCCHHHHHHH---HHhhcCC
Confidence 5566899999999999999999542 5555523 567777776644 4444443
No 74
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=46.71 E-value=30 Score=29.01 Aligned_cols=48 Identities=23% Similarity=0.286 Sum_probs=36.1
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCCCCChhHHHhhcCCCCCcHHHHHhhhchh
Q 012756 214 KKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKY 266 (457)
Q Consensus 214 kK~Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKY 266 (457)
+..|-.||+|--++++++|++.|.+. +.|-+.| +|-|..++..+-..|
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G~~W---~~Ia~~~--~~Rt~~qcr~Rw~~~ 55 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHGSDW---KMIAATF--PNRNARQCRDRWKNY 55 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHTTCH---HHHHHTC--TTCCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCH---HHHHHHc--CCCCHHHHHHHHhhh
Confidence 34466899999999999999999643 6777766 477777776554443
No 75
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=45.96 E-value=1.6 Score=37.28 Aligned_cols=24 Identities=21% Similarity=0.391 Sum_probs=18.9
Q ss_pred hhhhhchhhHHhhcC--CCHHHHHHH
Q 012756 2 MKCIALGAVEFLRKP--LSEDKLRNL 25 (457)
Q Consensus 2 mkci~~GA~DyL~KP--lr~~elkni 25 (457)
.+|+..||.||++|| +...+|...
T Consensus 69 ~~~~~~Ga~~~l~kp~~~~~~~l~~~ 94 (237)
T 3cwo_X 69 IEAIKAGAKDFIVNTAAVENPSLITQ 94 (237)
T ss_dssp HHHHHTTCCEEEESHHHHHCTHHHHH
T ss_pred HHHHHCCHHheEeCCcccChHHHHHH
Confidence 468899999999999 666666543
No 76
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=43.97 E-value=31 Score=29.11 Aligned_cols=42 Identities=26% Similarity=0.444 Sum_probs=33.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCChhHHHhhcCCCCCcHHHHHhhhch
Q 012756 219 DWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQK 265 (457)
Q Consensus 219 ~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQK 265 (457)
.||+|-.+.++++|.++|... ..|-+.| +|-|..+|+.|-..
T Consensus 56 ~Wt~eEd~~L~~~~~~~G~~W---~~Ia~~l--~gRt~~~~k~rw~~ 97 (131)
T 3zqc_A 56 AWTPEEDETIFRNYLKLGSKW---SVIAKLI--PGRTDNAIKNRWNS 97 (131)
T ss_dssp CCCHHHHHHHHHHHHHSCSCH---HHHTTTS--TTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCcCH---HHHHHHc--CCCCHHHHHHHHHH
Confidence 699999999999999999543 5566654 69999999987443
No 77
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=43.03 E-value=24 Score=29.47 Aligned_cols=43 Identities=33% Similarity=0.482 Sum_probs=35.0
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCChhHHHhhcCCCCCcHHHHHhhhc
Q 012756 217 KVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQ 264 (457)
Q Consensus 217 Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQ 264 (457)
+-.||+|-.+.++++|.++|... ..|-+.| +|-|..+|+.|-.
T Consensus 79 ~~~WT~eEd~~L~~~~~~~G~~W---~~Ia~~l--~gRt~~~~k~r~~ 121 (128)
T 1h8a_C 79 KTSWTEEEDRIIYQAHKRLGNRW---AEIAKLL--PGRTDNAVKNHWN 121 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCH---HHHGGGS--TTCCHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHCcCH---HHHHHHC--CCCCHHHHHHHHH
Confidence 45799999999999999999543 4566665 7999999998754
No 78
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=43.03 E-value=8.3 Score=31.46 Aligned_cols=45 Identities=22% Similarity=0.300 Sum_probs=34.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCChhHHHhhc-CCCCCcHHHHHhhhch
Q 012756 219 DWTPELHKKFVQAVEQLGVDQAIPSRILELM-KVEGLTRHNVASHLQK 265 (457)
Q Consensus 219 ~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM-~V~gLTr~~VkSHLQK 265 (457)
.||.+-.+.|..|+..+. +-||.+-..+- -|+|-|.++|+.|-|-
T Consensus 22 ~WT~eE~K~FE~ALa~yp--~~tpdRWekIA~~VpGKT~eEVk~hY~~ 67 (74)
T 4eef_G 22 PWKFSENIAFEIALSFTN--KDTPDRWKKVAQYVKGRTPEEVKKHYEL 67 (74)
T ss_dssp CCCTTHHHHHHHHTSSSC--SSCCSSSTTTGGGSCSSCHHHHHGGGC-
T ss_pred CCCHHHHHHHHHHHHHCC--CCCCcHHHHHHHHcCCCCHHHHHHHHHH
Confidence 599999999999998875 44566543322 2579999999999773
No 79
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=37.77 E-value=42 Score=26.91 Aligned_cols=45 Identities=18% Similarity=0.291 Sum_probs=34.6
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCChhHHHhhcCCCCCcHHHHHhhhchh
Q 012756 218 VDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKY 266 (457)
Q Consensus 218 l~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKY 266 (457)
-.||+|-.++++++|+..|... =+.|-+.| +|-|..+++.|-++|
T Consensus 5 ~~WT~eED~~L~~~v~~~g~~~--W~~Ia~~l--~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 5 GPWTKEEDQRVIKLVQKYGPKR--WSVIAKHL--KGRIGKQCRERWHNH 49 (105)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTC--HHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCc--HHHHhhhh--cCCCHHHHHHHHHhc
Confidence 4799999999999999999521 25677776 688999888655443
No 80
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=37.74 E-value=14 Score=35.50 Aligned_cols=30 Identities=17% Similarity=0.466 Sum_probs=24.1
Q ss_pred hhhhchhhHHhhcCCCHHHHHHHHHHHHHH
Q 012756 3 KCIALGAVEFLRKPLSEDKLRNLWQHVVHK 32 (457)
Q Consensus 3 kci~~GA~DyL~KPlr~~elkniWQHV~Rk 32 (457)
+|+..||.||+.||+..++|...-..+.++
T Consensus 241 ~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~~ 270 (459)
T 1w25_A 241 KALEIGVNDILSRPIDPQELSARVKTQIQR 270 (459)
T ss_dssp HHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHhccccccccCCCCHHHHHHHHHHHHHH
Confidence 589999999999999999987655554443
No 81
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=37.46 E-value=2.5 Score=43.27 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=18.5
Q ss_pred hhhhhchhhHHhhcCCCHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDKLR 23 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~elk 23 (457)
++||+.||.||+.||+..++|+
T Consensus 123 v~a~~~ga~d~~~Kp~~~~~l~ 144 (489)
T 3hu3_A 123 VEGITGNLFEVYLKPYFLEAYR 144 (489)
T ss_dssp SSSCCSCHHHHTHHHHHTTTCE
T ss_pred cccccchhHHHHhHHHHhhcCc
Confidence 4688999999999999877664
No 82
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=37.35 E-value=40 Score=28.24 Aligned_cols=44 Identities=20% Similarity=0.341 Sum_probs=35.3
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCChhHHHhhcCCCCCcHHHHHhhhchh
Q 012756 218 VDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKY 266 (457)
Q Consensus 218 l~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKY 266 (457)
-.||+|-.+.++++|.++|... ..|-+.| +|-|..+|+.+-..+
T Consensus 63 ~~WT~eEd~~L~~~v~~~G~~W---~~Ia~~l--~gRt~~~~k~rw~~l 106 (126)
T 3osg_A 63 TPWTAEEDALLVQKIQEYGRQW---AIIAKFF--PGRTDIHIKNRWVTI 106 (126)
T ss_dssp SCCCHHHHHHHHHHHHHHCSCH---HHHHTTS--TTCCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCcCH---HHHHHHc--CCCCHHHHHHHHHHH
Confidence 3799999999999999999543 5677654 799999999875433
No 83
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=37.22 E-value=18 Score=33.17 Aligned_cols=42 Identities=21% Similarity=0.459 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhC-CCCCCCCC--------------CCCCChhHHHHHHHHcCCCCC
Q 012756 406 EVIDKVVKEAISK-PWLPLPLG--------------LKPPSADSVLAELSRQGISTI 447 (457)
Q Consensus 406 E~iDaai~dvl~k-PwlPLPlG--------------LKpPs~dsVm~EL~rQGi~~i 447 (457)
+.|++....+=.+ |..+.=++ +..|+++.+|.+|.++|+..|
T Consensus 26 ~~~~~~~~~l~~~~~~~~V~~af~~~~i~~~l~~~~~~~P~i~~al~~l~~~G~~~i 82 (269)
T 2xvy_A 26 PALDKMGDRVRAAHPDIPVRWAYTAKMIRAKLRAEGIAAPSPAEALAGMAEEGFTHV 82 (269)
T ss_dssp HHHHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHCCCCeEEeehhhHHHHHHHHHcCCCCCCHHHHHHHHHHCCCCEE
Confidence 4555544443322 66666666 889999999999999999864
No 84
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=36.24 E-value=54 Score=28.52 Aligned_cols=54 Identities=15% Similarity=0.220 Sum_probs=42.6
Q ss_pred cCCCCcccCCHHHHHHHHHHHHHhCC-CCCChhHHHhhcC--CCCCcHHHHHhhhchhhhhhc
Q 012756 212 NRKKMKVDWTPELHKKFVQAVEQLGV-DQAIPSRILELMK--VEGLTRHNVASHLQKYRMHRR 271 (457)
Q Consensus 212 ~~kK~Rl~WT~ELH~rFV~AV~qLG~-dkAtPK~ILelM~--V~gLTr~~VkSHLQKYRl~~k 271 (457)
..++.|-.||+|--+..+++|+++|. .. +.|+..+. .+|-|--+++. |||..++
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W---~~Ia~~~~~~f~~RT~v~lKd---RWrnllk 68 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRW---RDVKMRAFDNADHRTYVDLKD---KWKTLVH 68 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCH---HHHHHHHCSCCSSCCSHHHHH---HHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCH---HHHHHHhccccCCCCHHHHHH---HHHHHHh
Confidence 45677889999999999999999994 55 67888764 37888888885 5666554
No 85
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=35.14 E-value=80 Score=24.81 Aligned_cols=52 Identities=21% Similarity=0.199 Sum_probs=40.4
Q ss_pred CcccCCHHHHHHHHHHHHHhCCCCCChhHHHhhcC-CCCCcHHHHHhhhchhhhhhccc
Q 012756 216 MKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMK-VEGLTRHNVASHLQKYRMHRRHI 273 (457)
Q Consensus 216 ~Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~-V~gLTr~~VkSHLQKYRl~~k~~ 273 (457)
.|-.||+|--...++.|+++|... +.|+.--. .++-|.-+||. |||...++.
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W---~~I~~~y~f~~~RT~VdLKd---k~r~L~k~~ 59 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHW---NSILWSFPFQKGRRAVDLAH---KYHRLISGP 59 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCH---HHHHHHSCCCTTCCHHHHHH---HHHHHHTCS
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhH---HHHHHhCCCccCcccchHHH---HHHHHHhcc
Confidence 466899999999999999999643 78886433 47888888884 888766653
No 86
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=34.80 E-value=55 Score=25.92 Aligned_cols=42 Identities=21% Similarity=0.194 Sum_probs=35.5
Q ss_pred CcccCCHHHHHHHHHHHHHhCCCCCChhHHHhhcCCCCCcHHHHHhhh
Q 012756 216 MKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHL 263 (457)
Q Consensus 216 ~Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHL 263 (457)
.|-.||+|--+.++++|.++|-.. +.|-+.| |-|-.+|+.+-
T Consensus 22 ~k~~wT~EED~~L~~l~~~~G~kW---~~IA~~l---gRt~~q~knRw 63 (73)
T 2llk_A 22 HVGKYTPEEIEKLKELRIKHGNDW---ATIGAAL---GRSASSVKDRC 63 (73)
T ss_dssp CCCSSCHHHHHHHHHHHHHHSSCH---HHHHHHH---TSCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCH---HHHHHHh---CCCHHHHHHHH
Confidence 355899999999999999999654 7788888 88999998764
No 87
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=33.98 E-value=57 Score=28.13 Aligned_cols=43 Identities=30% Similarity=0.472 Sum_probs=35.5
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCChhHHHhhcCCCCCcHHHHHhhhc
Q 012756 217 KVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQ 264 (457)
Q Consensus 217 Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQ 264 (457)
+-.||+|-.+.+++++.++|..- ..|-.. ++|-|..+|+.|-.
T Consensus 110 ~~~WT~eEd~~L~~~~~~~g~~W---~~Ia~~--l~gRt~~~~knr~~ 152 (159)
T 1h89_C 110 KTSWTEEEDRIIYQAHKRLGNRW---AEIAKL--LPGRTDNAIKNHWN 152 (159)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCH---HHHHTT--STTCCHHHHHHHHH
T ss_pred ccCCChHHHHHHHHHHHHHCCCH---HHHHHH--CCCCCHHHHHHHHH
Confidence 56899999999999999999543 567665 47999999998754
No 88
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=33.46 E-value=54 Score=26.66 Aligned_cols=46 Identities=26% Similarity=0.262 Sum_probs=34.2
Q ss_pred ccCCHHHHHHHHHHHHHhCC-CCCChhHHHhhcCCCCCcHHHHHhhhchhhhhhc
Q 012756 218 VDWTPELHKKFVQAVEQLGV-DQAIPSRILELMKVEGLTRHNVASHLQKYRMHRR 271 (457)
Q Consensus 218 l~WT~ELH~rFV~AV~qLG~-dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl~~k 271 (457)
-.||+|-.++++++|+..|. +- ..|-+.|+ |-|..++.. .|+.++.
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W---~~Ia~~~~--~Rt~~qcr~---Rw~~~L~ 48 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDW---IRISQLMI--TRNPRQCRE---RWNNYIN 48 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCH---HHHHHHTT--TSCHHHHHH---HHHHHSS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCH---HHHhhhcC--CCCHHHHHH---HHHHHHc
Confidence 47999999999999999994 33 56777774 778877765 4444443
No 89
>3lyh_A Cobalamin (vitamin B12) biosynthesis CBIX protein; structural genomics, joint center for structural genomics, protein structure initiative; HET: MSE; 1.60A {Marinobacter aquaeolei}
Probab=31.37 E-value=30 Score=28.29 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCChhHHHHHHHHcCCCCC
Q 012756 406 EVIDKVVKEAISKPWLPLPLGLKPPSADSVLAELSRQGISTI 447 (457)
Q Consensus 406 E~iDaai~dvl~kPwlPLPlGLKpPs~dsVm~EL~rQGi~~i 447 (457)
+.+.+.+++.+ .+-..-=+.+-.|+++.++.+|.++|+.+|
T Consensus 25 ~~l~~~l~~~~-~~V~~a~le~~~P~l~~~l~~l~~~G~~~v 65 (126)
T 3lyh_A 25 EKLAEPTVESI-ENAAIAYMELAEPSLDTIVNRAKGQGVEQF 65 (126)
T ss_dssp HHHHHHHHHHS-TTCEEEESSSSSSBHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHhhc-CCEEEEEEeCCCCCHHHHHHHHHHcCCCEE
Confidence 34445555555 333222356789999999999999999864
No 90
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=30.57 E-value=62 Score=26.17 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=36.3
Q ss_pred cCCHHHHHHHHHHHHHhCC-CCCChhHHHhhcC--CCCCcHHHHHhhhchhhhhhc
Q 012756 219 DWTPELHKKFVQAVEQLGV-DQAIPSRILELMK--VEGLTRHNVASHLQKYRMHRR 271 (457)
Q Consensus 219 ~WT~ELH~rFV~AV~qLG~-dkAtPK~ILelM~--V~gLTr~~VkSHLQKYRl~~k 271 (457)
.||+|-.+..+++|+++|. .. +.|++... ++|-|..++|. |||..++
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~W---~~I~~~~~~~~~~RT~~~lKd---rWrnllk 51 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGRW---RDVKMRAFDNADHRTYVDLKD---KWKTLVH 51 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCH---HHHHHHHCTTCTTSCHHHHHH---HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCc---HHHHHhhccccCCCCHHHHHH---HHHHHHH
Confidence 5999999999999999995 44 57777532 57899999986 4555443
No 91
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=29.01 E-value=77 Score=26.59 Aligned_cols=49 Identities=12% Similarity=0.341 Sum_probs=40.1
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCChhHHHhhcCCCCCcHHHHHhhhchhhh
Q 012756 217 KVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRM 268 (457)
Q Consensus 217 Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl 268 (457)
+..|-...-++.++.+..-| .++++.|-+.+++ |+|+..|..||++-..
T Consensus 7 ~~~~md~~d~~IL~~L~~~g--~~s~~eLA~~l~~-giS~~aVs~rL~~Le~ 55 (111)
T 3b73_A 7 SGSWMTIWDDRILEIIHEEG--NGSPKELEDRDEI-RISKSSVSRRLKKLAD 55 (111)
T ss_dssp CCTTCCHHHHHHHHHHHHHS--CBCHHHHHTSTTC-CSCHHHHHHHHHHHHH
T ss_pred hhhhcCHHHHHHHHHHHHcC--CCCHHHHHHHHhc-CCCHHHHHHHHHHHHH
Confidence 45788888888988887767 6899999887754 7899999999998664
No 92
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=26.99 E-value=1.5e+02 Score=23.21 Aligned_cols=60 Identities=17% Similarity=0.320 Sum_probs=41.7
Q ss_pred cCCCCcccCCHHHHHHHHHHHHHhC--CCCCChhHHHhhcCCCCCcHHHHHhhhchhhhhhc
Q 012756 212 NRKKMKVDWTPELHKKFVQAVEQLG--VDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRR 271 (457)
Q Consensus 212 ~~kK~Rl~WT~ELH~rFV~AV~qLG--~dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl~~k 271 (457)
.+|+.|-..|.+--......++.+| ....+...+.+|...-|||..+|+-=.|.-|...+
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~ 77 (80)
T 1wh5_A 16 IRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGP 77 (80)
T ss_dssp CSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSS
T ss_pred CCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCC
Confidence 4567788899876555556666677 44455566666666669999999988877665544
No 93
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=24.76 E-value=93 Score=25.87 Aligned_cols=44 Identities=20% Similarity=0.356 Sum_probs=34.5
Q ss_pred cccCCHHHHHHHHHHHHHhCC-CCCChhHHHhhcCCCCCcHHHHHhhhch
Q 012756 217 KVDWTPELHKKFVQAVEQLGV-DQAIPSRILELMKVEGLTRHNVASHLQK 265 (457)
Q Consensus 217 Rl~WT~ELH~rFV~AV~qLG~-dkAtPK~ILelM~V~gLTr~~VkSHLQK 265 (457)
+-.||+|--++++++|+++|. .. +.|-+.| +|-|..+++.+-..
T Consensus 27 k~~Wt~eED~~L~~~v~~~g~~~W---~~Ia~~l--~~Rt~~qcr~Rw~~ 71 (128)
T 1h8a_C 27 KGPWTKEEDQRVIEHVQKYGPKRW---SDIAKHL--KGRIGKQCRERWHN 71 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHTCSCCH---HHHHHHS--SSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCH---HHHHHHh--cCCcHHHHHHHHHH
Confidence 457999999999999999994 33 5677776 58888888765443
No 94
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=24.65 E-value=61 Score=25.20 Aligned_cols=45 Identities=9% Similarity=0.182 Sum_probs=35.5
Q ss_pred cCCHHHHHHHHHHHHHhC-CCCCChhHHHhhcCCCCCcHHHHHhhhchh
Q 012756 219 DWTPELHKKFVQAVEQLG-VDQAIPSRILELMKVEGLTRHNVASHLQKY 266 (457)
Q Consensus 219 ~WT~ELH~rFV~AV~qLG-~dkAtPK~ILelM~V~gLTr~~VkSHLQKY 266 (457)
.=|+++.++.++++.+.| .+..|.+.|-+.+| +++..|..||.+-
T Consensus 10 ~~~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lg---vs~~tV~~~L~~L 55 (77)
T 1qgp_A 10 SIYQDQEQRILKFLEELGEGKATTAHDLSGKLG---TPKKEINRVLYSL 55 (77)
T ss_dssp HHHHHHHHHHHHHHHHHCSSSCEEHHHHHHHHC---CCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHC---cCHHHHHHHHHHH
Confidence 346788889999999999 56788899999996 5577788887544
No 95
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=24.17 E-value=1.8e+02 Score=22.92 Aligned_cols=60 Identities=15% Similarity=0.307 Sum_probs=39.0
Q ss_pred ccCCCCcccCCHHHHHHHHHHHHH-hC--CCCCChhHHHhhcCCCCCcHHHHHhhhchhhhhhc
Q 012756 211 ANRKKMKVDWTPELHKKFVQAVEQ-LG--VDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRR 271 (457)
Q Consensus 211 ~~~kK~Rl~WT~ELH~rFV~AV~q-LG--~dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl~~k 271 (457)
..+|+.|-..|.+--.... ++.. || ....+.....+|...-|||..+|+.=.|.-|...+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~ 77 (80)
T 1wh7_A 15 GTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGP 77 (80)
T ss_dssp CCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSC
T ss_pred CCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCC
Confidence 3556778888886433333 5554 66 44455556666666569999999988877665544
No 96
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; HET: SIR; 1.90A {Salmonella enterica} PDB: 1qgo_A*
Probab=24.12 E-value=34 Score=31.77 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=20.1
Q ss_pred CCCCCChhHHHHHHHHcCCCCC
Q 012756 426 GLKPPSADSVLAELSRQGISTI 447 (457)
Q Consensus 426 GLKpPs~dsVm~EL~rQGi~~i 447 (457)
|+..|+++.+|.+|..+|+..|
T Consensus 56 g~~~psi~~aL~~l~~~G~~~v 77 (264)
T 2xwp_A 56 GIDIDTPLQALQKLAAQGYQDV 77 (264)
T ss_dssp CCCCCCHHHHHHHHHHHTCCEE
T ss_pred CCCCCCHHHHHHHHHhCCCCEE
Confidence 7799999999999999999863
No 97
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=21.50 E-value=29 Score=37.25 Aligned_cols=31 Identities=6% Similarity=-0.165 Sum_probs=24.0
Q ss_pred hhhhhchhhHHhhcCCCHHH--HHHHHHHHHHHH
Q 012756 2 MKCIALGAVEFLRKPLSEDK--LRNLWQHVVHKA 33 (457)
Q Consensus 2 mkci~~GA~DyL~KPlr~~e--lkniWQHV~Rk~ 33 (457)
..++..||.||+.||+...| ++.|=..+ ||.
T Consensus 102 ~~~l~~gaddyi~kpf~~~efl~~ri~a~~-rr~ 134 (755)
T 2vyc_A 102 DRDLLELVDEFAWILEDTADFIAGRAVAAM-TRY 134 (755)
T ss_dssp SHHHHHHCSEEEETTTSCHHHHHHHHHHHH-HHH
T ss_pred cHhHhhcCCceEeCCCCCHHHHHHHHHHHH-HHh
Confidence 45789999999999999999 46665544 554
No 98
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=21.16 E-value=1.7e+02 Score=21.05 Aligned_cols=38 Identities=16% Similarity=0.052 Sum_probs=28.7
Q ss_pred CCCCChhHHHhhcCCCCCcHHHHHhhhchhhhhhcccCCcc
Q 012756 237 VDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPKE 277 (457)
Q Consensus 237 ~dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl~~k~~l~~~ 277 (457)
.+.-+-+.|-+.| |+|...|++|+.+-+..++..+..+
T Consensus 23 ~~g~s~~eIA~~l---gis~~tV~~~~~ra~~kLr~~~~~~ 60 (68)
T 2p7v_B 23 NTDYTLEEVGKQF---DVTRERIRQIEAKALRKLRHPSRSE 60 (68)
T ss_dssp SSCCCHHHHHHHH---TCCHHHHHHHHHHHHHGGGSCCGGG
T ss_pred CCCCCHHHHHHHH---CcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888 5678889999888877777665543
No 99
>3plv_C 66 kDa U4/U6.U5 small nuclear ribonucleoprotein C; ubiquitin-like, peptide binding protein; 1.90A {Saccharomyces cerevisiae}
Probab=20.45 E-value=34 Score=21.93 Aligned_cols=7 Identities=57% Similarity=0.634 Sum_probs=5.3
Q ss_pred CCCCCCC
Q 012756 425 LGLKPPS 431 (457)
Q Consensus 425 lGLKpPs 431 (457)
|||||++
T Consensus 14 lGLkplp 20 (21)
T 3plv_C 14 LGLKLIP 20 (26)
T ss_dssp TTCCCCC
T ss_pred cCCCCCC
Confidence 7888865
No 100
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=20.45 E-value=1.2e+02 Score=26.11 Aligned_cols=46 Identities=20% Similarity=0.308 Sum_probs=35.6
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCChhHHHhhcCCCCCcHHHHHhhhchh
Q 012756 217 KVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKY 266 (457)
Q Consensus 217 Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKY 266 (457)
+-.||+|-.++++++|..+|... =..|-+.| +|-|..+++.+-..|
T Consensus 58 ~~~Wt~eEd~~L~~~v~~~g~~~--W~~Ia~~l--~~Rt~~qcr~Rw~~~ 103 (159)
T 1h89_C 58 KGPWTKEEDQRVIKLVQKYGPKR--WSVIAKHL--KGRIGKQCRERWHNH 103 (159)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCC--HHHHHHTS--TTCCHHHHHHHHHHT
T ss_pred CCCCChHHHHHHHHHHHHhCccc--HHHHHHHc--CCCCHHHHHHHHHHH
Confidence 56899999999999999999421 25677776 688999988765443
No 101
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=20.14 E-value=1.3e+02 Score=22.79 Aligned_cols=60 Identities=18% Similarity=0.234 Sum_probs=38.3
Q ss_pred cCCCCcccCCHHHHHHHHHHHHHhCCCCCChhHHHhhcCCCCCcHHHHHhhhchhhhhhccc
Q 012756 212 NRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHI 273 (457)
Q Consensus 212 ~~kK~Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl~~k~~ 273 (457)
..|+.|...|.+-- ..++.+.+.. ...+...+.+|...-|||..+|+.=.|.-|...++.
T Consensus 16 ~~rr~Rt~ft~~Ql-~~Le~~f~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 75 (80)
T 2da3_A 16 RDKRLRTTITPEQL-EILYQKYLLD-SNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKS 75 (80)
T ss_dssp CCTTCCSSCCTTTH-HHHHHHHHHC-SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCHHHH-HHHHHHHHhc-CCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhh
Confidence 45677888888643 3344444433 234445555555555899999999888888766553
No 102
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=20.12 E-value=95 Score=26.06 Aligned_cols=43 Identities=12% Similarity=0.118 Sum_probs=31.6
Q ss_pred cCCHHHHHHHHHHHHHhCC-CCCChhHHHhhcCCCCCcHHHHHhhhchh
Q 012756 219 DWTPELHKKFVQAVEQLGV-DQAIPSRILELMKVEGLTRHNVASHLQKY 266 (457)
Q Consensus 219 ~WT~ELH~rFV~AV~qLG~-dkAtPK~ILelM~V~gLTr~~VkSHLQKY 266 (457)
.||+|--++.+++|.+.|. +. +.|-+.| +|-|..++.-+-+.|
T Consensus 4 ~Wt~eED~~L~~~v~~~g~~~W---~~Ia~~~--~~Rt~~qcr~Rw~~~ 47 (131)
T 3zqc_A 4 PFTEAEDDLIREYVKENGPQNW---PRITSFL--PNRSPKQCRERWFNH 47 (131)
T ss_dssp SCCHHHHHHHHHHHHHHCSCCG---GGGTTSC--TTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcCCH---HHHHHHH--CCCCHHHHHHHHhhc
Confidence 6999999999999999993 33 4555555 577877776554433
Done!