Query 012757
Match_columns 457
No_of_seqs 324 out of 2127
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 15:38:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012757.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012757hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v5u_A Uncharacterized membran 100.0 1E-46 3.5E-51 377.9 24.2 293 107-437 7-303 (320)
2 3v5u_A Uncharacterized membran 99.8 1.3E-19 4.4E-24 181.4 13.7 145 291-440 4-148 (320)
3 2oar_A Large-conductance mecha 22.8 37 0.0013 30.2 2.0 32 348-379 31-69 (174)
4 2kdc_A Diacylglycerol kinase; 19.8 3.2E+02 0.011 22.5 7.2 41 96-136 43-84 (121)
5 3hzq_A Large-conductance mecha 12.7 53 0.0018 27.2 0.5 18 349-366 29-47 (114)
6 3gia_A Uncharacterized protein 12.6 4.6E+02 0.016 25.4 7.7 21 248-268 406-426 (444)
7 3arc_L Photosystem II reaction 10.9 3.5E+02 0.012 17.5 3.8 29 198-226 7-35 (37)
8 3lae_A UPF0053 protein HI0107; 6.5 1.6E+02 0.0056 22.0 1.1 24 128-151 20-51 (81)
9 2fvh_A Urease gamma subunit; p 6.1 1E+03 0.036 19.5 5.7 46 384-429 18-64 (120)
10 3llb_A Uncharacterized protein 5.9 1.7E+02 0.0059 22.0 0.9 25 127-151 19-51 (83)
No 1
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=100.00 E-value=1e-46 Score=377.86 Aligned_cols=293 Identities=18% Similarity=0.180 Sum_probs=242.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC--Ccccchhhhhcc-chHHHHHHHHHhhcCCcceehhhhhhHHHHHHHHHH
Q 012757 107 WVFALSLLGLAPLAERVSFLTEQIAYFTG--PTVGGLMNATCG-NATELIIALFALYENKIHVLKYSLLGSVLSNLLLVL 183 (457)
Q Consensus 107 ~vF~l~~l~iipla~~l~~~~e~la~~~G--~~vggll~a~~g-n~pEliisi~Al~~g~~~iv~gsiiGSil~nllLvl 183 (457)
..|+.++++++++++++++++|++|+++| +.+.|++++++| |+||+++++.|..+|++|+++||++|||++|+++++
T Consensus 7 ~~l~~g~~~l~~~a~~lv~~~~~la~~lgis~~viGltiva~GTSlPEl~vsi~A~~~g~~diaiGnivGSni~nillvl 86 (320)
T 3v5u_A 7 GYFLLGLILLYYGSDWFVLGSERIARHFNVSNFVIGATVMAIGTSLPEILTSAYASYMHAPGISIGNAIGSCICNIGLVL 86 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTBCHHHHHHTHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHcccHHHHHHHHHHhCCCCceeeeeecchHHHHHHHHH
Confidence 45788999999999999999999999999 899999999999 799999999999999999999999999999999999
Q ss_pred HHHHhhccccccccccccchhhhhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 012757 184 GTSLLCGGLANIREEQRYDRKQADVNSLLLLLGLLCQMLPLLFRYAAEPGTFPADSILQLSRASSILMLLAYVAYIFFQL 263 (457)
Q Consensus 184 G~~~l~gg~~~~~~~q~~~~~~a~~~~~ll~lav~~lllP~~~~~~~~~~~~~~~~~~~lsr~~aiiLl~~Y~~yl~f~l 263 (457)
|++.++++++ .++.+. ++ ..+++++++.+ ++ + ..| + ++|+++++++..|++|++|++
T Consensus 87 G~~~li~p~~---v~~~~~-~d----~~~~l~~~~~l-~~--~---------~~~--g-is~~~g~~Ll~~Y~~yl~~~~ 143 (320)
T 3v5u_A 87 GLSAIISPII---VDKNLQ-KN----ILVYLLFVIFA-AV--I---------GID--G-FSWIDGVVLLILFIIYLRWTV 143 (320)
T ss_dssp HHHHHHSCBC---CCHHHH-HH----HHHHHHHHHHH-HH--H---------TTT--C-BCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccc---ccHHHH-HH----HHHHHHHHHHH-HH--H---------HHc--c-cHHHHHHHHHHHHHHHHHHHH
Confidence 9999999875 233332 22 22233332222 11 1 122 3 899999999999999999999
Q ss_pred HhhhhhccccccCCcchhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhcCCCcceeeeeehhccccchhHH
Q 012757 264 KTHRKLFESQEQEDEDEDEEKAVIGFWSAFSWLVGMTAIIAVLSEYVVGTIEAASDSWGISVSFISIILLPIVGNAAEHA 343 (457)
Q Consensus 264 ~th~~~f~~~~~~~~~~~~e~~~~s~~~~i~~li~~~~~i~~~a~~lV~si~~i~~~~gis~~fiGlillai~tslpE~~ 343 (457)
|+|++. + |+ ++++++.+.++.+.+++++++++..+++++|++++.+++.+|+|+.++|+|++|++||+||++
T Consensus 144 ~~~~~~----~-~~---~~~~~~~~~~~~~~~l~~~l~~l~~~a~~lv~~~~~ia~~~gis~~~iGltlva~gtslPE~~ 215 (320)
T 3v5u_A 144 KNGSAE----I-EE---NNDKNNPSVVFSLVLLIIGLIGVLVGAELFVDGAKKIALALDISDKVIGFTLVAFGTSLPELM 215 (320)
T ss_dssp HHTBC---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHTHHHHHTHHHHH
T ss_pred Hhcccc----c-cc---ccccccccHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHhCCchHHHHHHHHHHHhccHHHH
Confidence 998751 1 11 112234566788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcchHHHHhhHHHHHHHhHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHhCCccchHHHHHH
Q 012757 344 GSIIFAFKNKLDISLGVALGSATQISMFVVPLCVVIAWIIGVYMDLDFSLLETGSLAFTIIIVAFTLQDGTSHYMKGVVL 423 (457)
Q Consensus 344 ~ai~aa~~g~~dlaig~~iGS~i~~~l~vipl~vli~~~~g~~~~l~f~~~~~~~l~~svl~~~~~~~~g~~~~~~G~~L 423 (457)
+++.+++||+.|+++|+++|||+||+++++|+..++. |++++ .+|...+..+.+++...++|||++|+||.+|
T Consensus 216 ~sv~aa~~g~~~laig~iiGS~ifn~~~v~g~~~li~-----p~~~~--~~d~~~~l~~~~ll~~~~~~~~i~~~eG~~l 288 (320)
T 3v5u_A 216 VSLAAAKRNLGGMVLGNVIGSNIADIGGALAVGSLFM-----HLPAE--NVQMAVLVIMSLLLYLFAKYSKIGRWQGILF 288 (320)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTHHHHHHHHS-----CBCCC--HHHHHHHHHHHHHHHHHHHHSCBSHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHhHHHHHHHHHHHHHHhhc-----cccch--HHHHHHHHHHHHHHHHHHhCCcCcHHHHHHH
Confidence 9999999999999999999999999999999988874 55544 5666554444444444778999999999999
Q ss_pred HHHHHH-HHHHHHHc
Q 012757 424 FLCYIA-IAACFFVH 437 (457)
Q Consensus 424 l~~Y~i-~~~~~~~~ 437 (457)
+.+|++ |+...+..
T Consensus 289 l~~Y~~~y~~~~~~~ 303 (320)
T 3v5u_A 289 LALYIIAIASLRMGG 303 (320)
T ss_dssp HHHHHHHHHHSCSSC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999 99876653
No 2
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=99.81 E-value=1.3e-19 Score=181.42 Aligned_cols=145 Identities=19% Similarity=0.200 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhhhcCCCcceeeeeehhccccchhHHHHHHHHHhCCCcchHHHHhhHHHHHHH
Q 012757 291 SAFSWLVGMTAIIAVLSEYVVGTIEAASDSWGISVSFISIILLPIVGNAAEHAGSIIFAFKNKLDISLGVALGSATQISM 370 (457)
Q Consensus 291 ~~i~~li~~~~~i~~~a~~lV~si~~i~~~~gis~~fiGlillai~tslpE~~~ai~aa~~g~~dlaig~~iGS~i~~~l 370 (457)
..+++++++++++..++++++++.+.+++++|+|+.++|+|++|+|||+||+++++.++++|+.|+++||++|||++|++
T Consensus 4 ~~~~~l~~g~~~l~~~a~~lv~~~~~la~~lgis~~viGltiva~GTSlPEl~vsi~A~~~g~~diaiGnivGSni~nil 83 (320)
T 3v5u_A 4 LGVGYFLLGLILLYYGSDWFVLGSERIARHFNVSNFVIGATVMAIGTSLPEILTSAYASYMHAPGISIGNAIGSCICNIG 83 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTBCHHHHHHTHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHcccHHHHHHHHHHhCCCCceeeeeecchHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHccCC
Q 012757 371 FVVPLCVVIAWIIGVYMDLDFSLLETGSLAFTIIIVAFTLQDGTSHYMKGVVLFLCYIAIAACFFVHKIP 440 (457)
Q Consensus 371 ~vipl~vli~~~~g~~~~l~f~~~~~~~l~~svl~~~~~~~~g~~~~~~G~~Ll~~Y~i~~~~~~~~~~~ 440 (457)
+++|++.++++. +++..+ ..+...+.++.++......|| .+|++|.+|+.+|++|+...+...+.
T Consensus 84 lvlG~~~li~p~---~v~~~~-~~d~~~~l~~~~~l~~~~~~g-is~~~g~~Ll~~Y~~yl~~~~~~~~~ 148 (320)
T 3v5u_A 84 LVLGLSAIISPI---IVDKNL-QKNILVYLLFVIFAAVIGIDG-FSWIDGVVLLILFIIYLRWTVKNGSA 148 (320)
T ss_dssp THHHHHHHHSCB---CCCHHH-HHHHHHHHHHHHHHHHHTTTC-BCHHHHHHHHHHHHHHHHHHHHHTBC
T ss_pred HHHHHHHHHccc---cccHHH-HHHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999988642 221111 234444444444445566788 99999999999999999988776543
No 3
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=22.85 E-value=37 Score=30.20 Aligned_cols=32 Identities=25% Similarity=0.524 Sum_probs=21.9
Q ss_pred HHHhCC-CcchHHHHhhHHHH---HHH---hHHHHHHHH
Q 012757 348 FAFKNK-LDISLGVALGSATQ---ISM---FVVPLCVVI 379 (457)
Q Consensus 348 aa~~g~-~dlaig~~iGS~i~---~~l---~vipl~vli 379 (457)
++.||+ +|+|+|.++|++.. +.+ ++.|+..++
T Consensus 31 Fi~RGNViDLAVgVIIGaAF~~IVtSlV~dIImPlIgl~ 69 (174)
T 2oar_A 31 FLARGNIVDLAVAVVIGTAFTALVTKFTDSIITPLINRI 69 (174)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 556665 59999999999853 222 467766544
No 4
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK, cell inner membrane, cell membrane, membrane, phospholipid biosynthesis; NMR {Escherichia coli}
Probab=19.79 E-value=3.2e+02 Score=22.48 Aligned_cols=41 Identities=22% Similarity=0.169 Sum_probs=32.5
Q ss_pred HHHHhhcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 012757 96 VIARLNNFGR-PWVFALSLLGLAPLAERVSFLTEQIAYFTGP 136 (457)
Q Consensus 96 i~~~~~~~~~-~~vF~l~~l~iipla~~l~~~~e~la~~~G~ 136 (457)
.+.-+++.+. .|.+.+..++++..+|.+..+.|.+..+.++
T Consensus 43 ~~~~~l~~s~~e~~~li~~i~lVl~~EllNTAIE~vvD~v~~ 84 (121)
T 2kdc_A 43 VIACWLDVDAITRVLLISSVMLVMIVEILNSAIEAVVDRIGS 84 (121)
T ss_dssp HHHHHCCCCCSHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3344556544 6788888889999999999999999998874
No 5
>3hzq_A Large-conductance mechanosensitive channel; intermediate state mechanosensitive channel osmoregulation, cell membrane, ION transport; 3.82A {Staphylococcus aureus subsp}
Probab=12.71 E-value=53 Score=27.16 Aligned_cols=18 Identities=39% Similarity=0.720 Sum_probs=13.9
Q ss_pred HHhCC-CcchHHHHhhHHH
Q 012757 349 AFKNK-LDISLGVALGSAT 366 (457)
Q Consensus 349 a~~g~-~dlaig~~iGS~i 366 (457)
+.||+ .|+|+|.++|++.
T Consensus 29 i~rGNViDLAVgVIIG~AF 47 (114)
T 3hzq_A 29 ALKGNVLDLAIAVVMGAAF 47 (114)
T ss_dssp SSCCTTHHHHHHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHHH
Confidence 34554 4999999999985
No 6
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=12.59 E-value=4.6e+02 Score=25.43 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 012757 248 SILMLLAYVAYIFFQLKTHRK 268 (457)
Q Consensus 248 aiiLl~~Y~~yl~f~l~th~~ 268 (457)
..++++.++.|.++..+++|+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~ 426 (444)
T 3gia_A 406 IATFIGVLIFEIIYRKVTKRT 426 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHhccCC
Confidence 334444455555544443333
No 7
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=10.92 E-value=3.5e+02 Score=17.47 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=17.8
Q ss_pred ccccchhhhhhhHHHHHHHHHHHHHHHHH
Q 012757 198 EQRYDRKQADVNSLLLLLGLLCQMLPLLF 226 (457)
Q Consensus 198 ~q~~~~~~a~~~~~ll~lav~~lllP~~~ 226 (457)
+|......++.|..++++-++..+++..|
T Consensus 7 ~q~VELNRTSLy~GLLlifvlavlFssyf 35 (37)
T 3arc_L 7 RQPVELNRTSLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp CCCBCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcceechhhHHHHHHHHHHHHHHhhhhc
Confidence 44444444667788887777776665443
No 8
>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*
Probab=6.48 E-value=1.6e+02 Score=22.00 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=18.3
Q ss_pred HHHHHHhC--------CcccchhhhhccchHH
Q 012757 128 EQIAYFTG--------PTVGGLMNATCGNATE 151 (457)
Q Consensus 128 e~la~~~G--------~~vggll~a~~gn~pE 151 (457)
+++.+.+| +|+||++..-+|..|+
T Consensus 20 ~dl~~~l~~~l~~~~~~Tl~G~i~~~lg~iP~ 51 (81)
T 3lae_A 20 RDLNKMFNWELDTEDARTFNGLILEHLEEIPD 51 (81)
T ss_dssp HHHHHHHCCCCCCSSCSBHHHHHHHHCSSCCC
T ss_pred HHHHHHhCCCCCCCCCccHHHHHHHHhCCCCC
Confidence 45556555 4899999999998886
No 9
>2fvh_A Urease gamma subunit; protein: UREA homolog, structural genomics, PSI, protein STR initiative, TB structural genomics consortium; 1.80A {Mycobacterium tuberculosis}
Probab=6.12 E-value=1e+03 Score=19.46 Aligned_cols=46 Identities=15% Similarity=0.062 Sum_probs=0.0
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHhCC-ccchHHHHHHHHHHHH
Q 012757 384 GVYMDLDFSLLETGSLAFTIIIVAFTLQDG-TSHYMKGVVLFLCYIA 429 (457)
Q Consensus 384 g~~~~l~f~~~~~~~l~~svl~~~~~~~~g-~~~~~~G~~Ll~~Y~i 429 (457)
+.+|.|...-.|-..+..+..+.---..+| |.||-|.+.++..++.
T Consensus 18 ~~~M~LtPrE~dkLli~~Aa~LA~rR~aRGlkLN~pEAvAlIs~~il 64 (120)
T 2fvh_A 18 GSHMRLTPHEQERLLLSYAAELARRRRARGLRLNHPEAIAVIADHIL 64 (120)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHH
T ss_pred CCcCCcCchhHHHHHHHHHHHHHHHHHHcccccCcHHHHHHHHHHHH
No 10
>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0
Probab=5.92 E-value=1.7e+02 Score=21.99 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=0.0
Q ss_pred HHHHHHHhC--------CcccchhhhhccchHH
Q 012757 127 TEQIAYFTG--------PTVGGLMNATCGNATE 151 (457)
Q Consensus 127 ~e~la~~~G--------~~vggll~a~~gn~pE 151 (457)
.+++.+.+| +|+||++..-+|..|+
T Consensus 19 l~dl~~~l~~~l~~~~~~Tl~G~i~~~lg~iP~ 51 (83)
T 3llb_A 19 VDAFNDFFGSEFSDEEFDTVGGLVMSAFGHLPK 51 (83)
T ss_dssp HHHHHHHHCCCCCTTTCSBHHHHHHHHHSSCCC
T ss_pred HHHHHHHhCCCCCCCCCcCHHHHHHHHhCcCCC
Done!