Query 012758
Match_columns 457
No_of_seqs 178 out of 792
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 06:00:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012758.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012758hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02859 AMPKbeta_GBD_like AMP- 99.9 7.5E-24 1.6E-28 170.5 9.4 78 365-455 1-79 (79)
2 cd02861 E_set_proteins_like E 99.8 5.8E-19 1.3E-23 141.6 8.8 77 366-455 2-82 (82)
3 KOG1616 Protein involved in Sn 99.5 1.1E-14 2.3E-19 143.2 7.9 83 365-457 79-162 (289)
4 cd02858 Esterase_N_term Estera 99.3 1.3E-11 2.8E-16 100.5 9.3 76 366-454 6-84 (85)
5 cd02688 E_set E or "early" set 98.9 5.2E-09 1.1E-13 80.0 7.9 70 366-447 4-75 (83)
6 cd02854 Glycogen_branching_enz 98.6 1.7E-07 3.7E-12 79.3 7.6 68 366-445 5-86 (99)
7 PF02922 CBM_48: Carbohydrate- 98.5 1.1E-07 2.3E-12 75.3 4.1 58 366-434 11-73 (85)
8 cd02860 Pullulanase_N_term Pul 98.0 2E-05 4.4E-10 65.2 7.7 68 367-448 9-88 (100)
9 cd05808 CBM20_alpha_amylase Al 97.9 4.3E-05 9.3E-10 62.2 7.7 63 367-441 2-78 (95)
10 cd02855 Glycogen_branching_enz 97.8 0.00014 3.1E-09 59.3 8.8 77 367-454 22-105 (106)
11 COG0296 GlgB 1,4-alpha-glucan 97.7 5.3E-05 1.2E-09 82.5 6.4 68 364-443 34-109 (628)
12 PF00686 CBM_20: Starch bindin 97.7 0.00014 3E-09 60.0 7.4 58 366-431 2-68 (96)
13 PRK12313 glycogen branching en 97.6 0.00024 5.3E-09 76.4 8.7 67 366-444 38-111 (633)
14 PRK12568 glycogen branching en 97.5 0.00036 7.8E-09 77.3 9.1 69 364-445 136-212 (730)
15 cd02856 Glycogen_debranching_e 97.4 0.0007 1.5E-08 56.6 7.5 53 367-433 10-66 (103)
16 cd05818 CBM20_water_dikinase P 97.4 0.0013 2.7E-08 54.8 8.6 67 366-445 2-80 (92)
17 PLN02447 1,4-alpha-glucan-bran 97.3 0.00037 8.1E-09 77.5 7.0 63 367-442 115-191 (758)
18 PRK14705 glycogen branching en 97.3 0.00076 1.6E-08 78.4 9.0 66 364-441 636-709 (1224)
19 PRK14706 glycogen branching en 97.3 0.00073 1.6E-08 73.7 8.3 67 366-445 38-112 (639)
20 cd05811 CBM20_glucoamylase Glu 97.3 0.0022 4.7E-08 53.7 9.3 74 365-446 6-93 (106)
21 cd05820 CBM20_novamyl Novamyl 97.3 0.0022 4.7E-08 54.4 9.3 69 366-446 3-90 (103)
22 cd05814 CBM20_Prei4 Prei4, N-t 97.2 0.00092 2E-08 57.8 6.9 55 367-431 2-66 (120)
23 cd05809 CBM20_beta_amylase Bet 97.2 0.002 4.3E-08 54.0 8.5 69 365-442 2-85 (99)
24 PRK05402 glycogen branching en 97.2 0.0012 2.6E-08 72.5 8.8 67 366-443 131-204 (726)
25 cd02853 MTHase_N_term Maltooli 97.2 0.0018 3.9E-08 52.4 7.7 73 366-454 8-82 (85)
26 cd02852 Isoamylase_N_term Isoa 97.2 0.0012 2.7E-08 56.2 6.8 59 366-435 7-72 (119)
27 TIGR02402 trehalose_TreZ malto 97.1 0.0013 2.8E-08 70.2 7.2 62 368-446 1-65 (542)
28 cd05817 CBM20_DSP Dual-specifi 97.0 0.002 4.3E-08 54.1 6.8 52 368-431 2-62 (100)
29 cd05816 CBM20_DPE2_repeat2 Dis 97.0 0.0065 1.4E-07 50.9 9.7 66 368-445 2-84 (99)
30 cd05467 CBM20 The family 20 ca 97.0 0.0029 6.3E-08 51.2 6.8 53 368-431 2-65 (96)
31 cd05813 CBM20_genethonin_1 Gen 96.9 0.0038 8.2E-08 51.5 7.0 53 367-431 2-62 (95)
32 cd05807 CBM20_CGTase CGTase, C 96.9 0.0097 2.1E-07 49.9 9.4 74 365-446 2-90 (101)
33 TIGR01515 branching_enzym alph 96.7 0.0057 1.2E-07 66.1 8.2 68 366-445 28-103 (613)
34 PRK05402 glycogen branching en 96.5 0.005 1.1E-07 67.7 6.7 63 367-442 29-96 (726)
35 cd05810 CBM20_alpha_MTH Glucan 96.4 0.023 5E-07 47.9 8.4 66 367-444 2-85 (97)
36 PLN02316 synthase/transferase 96.2 0.078 1.7E-06 61.4 14.1 61 366-433 329-398 (1036)
37 cd05815 CBM20_DPE2_repeat1 Dis 95.7 0.034 7.4E-07 46.4 6.5 55 368-431 2-65 (101)
38 TIGR02104 pulA_typeI pullulana 95.5 0.04 8.6E-07 59.5 7.7 66 367-445 20-95 (605)
39 PLN02316 synthase/transferase 94.6 0.16 3.4E-06 59.1 9.6 55 366-431 491-557 (1036)
40 PF03423 CBM_25: Carbohydrate 94.3 0.058 1.2E-06 45.0 4.0 62 367-436 3-75 (87)
41 PF11806 DUF3327: Domain of un 93.7 0.36 7.8E-06 42.8 8.0 79 366-455 2-111 (122)
42 cd05806 CBM20_laforin Laforin 93.7 0.57 1.2E-05 41.5 9.2 60 367-431 2-74 (112)
43 PRK10439 enterobactin/ferric e 93.4 0.27 5.9E-06 51.1 7.9 82 362-456 35-161 (411)
44 PLN02950 4-alpha-glucanotransf 93.2 0.55 1.2E-05 54.0 10.4 71 364-446 151-237 (909)
45 TIGR02100 glgX_debranch glycog 93.1 0.25 5.5E-06 54.8 7.4 55 367-435 15-75 (688)
46 TIGR02102 pullulan_Gpos pullul 91.7 0.43 9.3E-06 55.9 7.4 66 367-444 328-408 (1111)
47 PLN02950 4-alpha-glucanotransf 91.4 0.98 2.1E-05 52.0 9.6 68 365-441 8-90 (909)
48 PLN02960 alpha-amylase 91.0 0.47 1E-05 54.6 6.6 59 367-432 129-198 (897)
49 TIGR02103 pullul_strch alpha-1 88.8 1.7 3.6E-05 50.2 8.8 68 366-445 135-216 (898)
50 PRK03705 glycogen debranching 88.8 1 2.2E-05 50.0 6.9 55 367-435 20-78 (658)
51 cd02857 CD_pullulan_degrading_ 88.2 2.6 5.7E-05 34.8 7.5 58 366-431 16-79 (116)
52 PRK14510 putative bifunctional 82.6 4.4 9.6E-05 48.1 8.4 56 366-435 23-84 (1221)
53 PLN02877 alpha-amylase/limit d 68.7 17 0.00036 42.8 7.9 64 367-445 223-303 (970)
54 PLN03244 alpha-amylase; Provis 64.7 14 0.00031 42.9 6.3 60 367-432 132-201 (872)
55 KOG0470 1,4-alpha-glucan branc 62.6 8.8 0.00019 43.8 4.2 41 368-419 115-157 (757)
56 PF02903 Alpha-amylase_N: Alph 61.4 23 0.0005 30.4 5.7 67 367-441 24-100 (120)
57 PF01357 Pollen_allerg_1: Poll 58.6 17 0.00038 30.1 4.3 59 365-438 13-77 (82)
58 PF03370 CBM_21: Putative phos 53.3 57 0.0012 28.3 6.8 69 366-434 21-99 (113)
59 COG3794 PetE Plastocyanin [Ene 44.5 64 0.0014 29.6 6.0 49 366-428 62-111 (128)
60 PF10281 Ish1: Putative stress 43.9 36 0.00077 24.5 3.4 30 66-102 7-36 (38)
61 PRK10785 maltodextrin glucosid 42.4 86 0.0019 34.5 7.6 61 366-434 21-87 (598)
62 PF00392 GntR: Bacterial regul 42.0 28 0.00061 26.8 2.9 44 62-107 3-47 (64)
63 KOG3990 Uncharacterized conser 41.6 1.1E+02 0.0024 31.6 7.7 31 298-328 230-260 (305)
64 TIGR03503 conserved hypothetic 41.2 53 0.0011 35.0 5.6 25 410-434 169-195 (374)
65 smart00345 HTH_GNTR helix_turn 38.9 32 0.0007 24.7 2.6 33 65-97 2-35 (60)
66 COG1725 Predicted transcriptio 38.4 75 0.0016 29.1 5.4 74 62-137 14-88 (125)
67 cd01278 aprataxin_related apra 38.3 28 0.0006 28.8 2.5 34 77-111 42-75 (104)
68 KOG1263 Multicopper oxidases [ 35.8 43 0.00094 37.2 4.1 33 410-442 96-132 (563)
69 TIGR02154 PhoB phosphate regul 34.3 5.3 0.00011 34.8 -2.5 23 85-107 203-225 (226)
70 PF00730 HhH-GPD: HhH-GPD supe 33.9 40 0.00088 27.8 2.8 36 66-106 16-51 (108)
71 PF13473 Cupredoxin_1: Cupredo 33.1 90 0.0019 26.0 4.8 17 412-428 74-91 (104)
72 PF08022 FAD_binding_8: FAD-bi 32.0 15 0.00033 31.0 0.0 12 19-36 47-58 (105)
73 cd07377 WHTH_GntR Winged helix 31.1 76 0.0017 23.2 3.6 33 62-94 4-37 (66)
74 COG0014 ProA Gamma-glutamyl ph 30.2 24 0.00053 38.0 1.1 63 56-120 150-221 (417)
75 KOG0045 Cytosolic Ca2+-depende 29.8 49 0.0011 37.1 3.4 27 420-446 114-143 (612)
76 PF07495 Y_Y_Y: Y_Y_Y domain; 28.3 55 0.0012 24.6 2.5 25 415-439 30-58 (66)
77 PF11896 DUF3416: Domain of un 27.5 58 0.0013 31.3 3.0 32 386-430 55-87 (187)
78 TIGR03798 ocin_TIGR03798 bacte 26.7 24 0.00051 27.9 0.2 39 56-113 9-47 (64)
79 PRK10301 hypothetical protein; 26.3 1.9E+02 0.0041 25.9 5.8 80 342-434 24-113 (124)
80 TIGR02375 pseudoazurin pseudoa 25.6 2.2E+02 0.0048 25.4 6.1 16 366-381 23-38 (116)
81 PF03801 Ndc80_HEC: HEC/Ndc80p 24.6 60 0.0013 30.1 2.5 27 51-77 28-54 (157)
82 TIGR02325 C_P_lyase_phnF phosp 24.3 90 0.0019 29.1 3.6 32 61-92 10-42 (238)
83 PF14347 DUF4399: Domain of un 24.3 1.1E+02 0.0025 26.1 3.9 33 410-443 49-81 (87)
84 PF07862 Nif11: Nitrogen fixat 24.2 53 0.0011 24.4 1.7 17 92-108 28-44 (49)
85 TIGR02404 trehalos_R_Bsub treh 23.8 93 0.002 29.2 3.7 60 62-126 3-66 (233)
86 PHA00451 protein kinase 22.8 4.6E+02 0.01 27.9 8.6 94 214-307 136-251 (362)
87 PF15513 DUF4651: Domain of un 22.8 59 0.0013 26.8 1.8 16 61-76 4-19 (62)
88 PF13620 CarboxypepD_reg: Carb 21.3 1.3E+02 0.0028 23.3 3.5 25 409-434 35-59 (82)
89 cd01276 PKCI_related Protein K 21.1 79 0.0017 25.9 2.3 43 77-122 40-82 (104)
90 PF04985 Phage_tube: Phage tai 21.0 3.8E+02 0.0083 24.4 6.9 52 377-445 98-151 (167)
91 PF05524 PEP-utilisers_N: PEP- 21.0 2.1E+02 0.0045 24.6 5.0 44 310-353 31-81 (123)
92 TIGR02657 amicyanin amicyanin. 20.4 2.2E+02 0.0048 23.0 4.8 16 412-428 54-69 (83)
93 PF06252 DUF1018: Protein of u 20.2 63 0.0014 28.2 1.6 35 68-106 6-40 (119)
No 1
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=99.90 E-value=7.5e-24 Score=170.51 Aligned_cols=78 Identities=35% Similarity=0.699 Sum_probs=71.6
Q ss_pred ceEEEEEEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEECCEeeeCCCCCee
Q 012758 365 LEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV 444 (457)
Q Consensus 365 Lv~VTFrW~g~AksV~VaGSFNNW~~~IpMeKd~ss~~~~~~gdkk~GvWstTL~LPPGrYEYKFIVDGeWt~DPdnPtV 444 (457)
+++|+|+|+++|++|+|+|+|++|++.+||.+. ..+ |++++.||||.|+|||+|||+|.+||+.|++
T Consensus 1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~------------~~~-~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~ 67 (79)
T cd02859 1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKS------------GKG-FSATLRLPPGKYQYKFIVDGEWRHSPDLPTE 67 (79)
T ss_pred CeEEEEEEcCCCcEEEEEEEcCCCCccccceEC------------CCC-cEEEEEcCCCCEEEEEEECCEEEeCCCCCcc
Confidence 368999999999999999999999988999984 334 9999999999999999999999999999999
Q ss_pred cc-CCccceEEE
Q 012758 445 TK-GGICNNILR 455 (457)
Q Consensus 445 tD-gGniNNVL~ 455 (457)
.| .|+.||+|.
T Consensus 68 ~d~~G~~NN~i~ 79 (79)
T cd02859 68 TDDEGNVNNVID 79 (79)
T ss_pred CCCCCcEeeeEC
Confidence 87 699999984
No 2
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.78 E-value=5.8e-19 Score=141.59 Aligned_cols=77 Identities=39% Similarity=0.689 Sum_probs=68.2
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEECCEee-eCCCCCe
Q 012758 366 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWK-VDPQRES 443 (457)
Q Consensus 366 v~VTFrW~g~-AksV~VaGSFNNW~~~IpMeKd~ss~~~~~~gdkk~GvWstTL~LPPGrYEYKFIVDGeWt-~DPdnPt 443 (457)
++|+|+|.++ |+.|+|+|+||+|+ .++|.+. .+|.|++++.|+||.|+|||+|||.|. .||.++.
T Consensus 2 ~~vtf~~~ap~a~~V~v~G~fn~W~-~~~m~~~------------~~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~ 68 (82)
T cd02861 2 VPVVFAYRGPEADSVYLAGSFNNWN-AIPMERE------------GDGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAA 68 (82)
T ss_pred ccEEEEEECCCCCEEEEEeECCCCC-cccCEEC------------CCCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCc
Confidence 4799999998 69999999999998 5789874 569999999999999999999999998 9999997
Q ss_pred ec-c-CCccceEEE
Q 012758 444 VT-K-GGICNNILR 455 (457)
Q Consensus 444 Vt-D-gGniNNVL~ 455 (457)
.. + .|+.|+||+
T Consensus 69 ~~~~~~g~~n~v~~ 82 (82)
T cd02861 69 YVDDGFGGKNAVFV 82 (82)
T ss_pred eecCCCCccceEcC
Confidence 65 4 488899874
No 3
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=99.54 E-value=1.1e-14 Score=143.16 Aligned_cols=83 Identities=39% Similarity=0.567 Sum_probs=75.1
Q ss_pred ceEEEEEEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEECCEeeeCCCCCee
Q 012758 365 LEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV 444 (457)
Q Consensus 365 Lv~VTFrW~g~AksV~VaGSFNNW~~~IpMeKd~ss~~~~~~gdkk~GvWstTL~LPPGrYEYKFIVDGeWt~DPdnPtV 444 (457)
..+|+|+|..+++.|+|.|+|++|..+++|.+.. +..|.|++++.|++|.|+|||+|||+|.+|++.|++
T Consensus 79 ~~pvvi~W~~gg~~v~v~gS~~nWk~~~~l~~~~----------~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta 148 (289)
T KOG1616|consen 79 GRPTVIRWSQGGKEVYVDGSFGNWKTKIPLVRSG----------KNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTA 148 (289)
T ss_pred CCceEEEecCCCceEEEecccccccccccceecC----------CCcccceeeEecCCceEEEEEecCCceecCCCCccc
Confidence 3699999999999999999999999889988742 244559999999999999999999999999999999
Q ss_pred cc-CCccceEEEeC
Q 012758 445 TK-GGICNNILRVI 457 (457)
Q Consensus 445 tD-gGniNNVL~V~ 457 (457)
++ .|+.||++.|.
T Consensus 149 ~d~~Gn~~N~i~v~ 162 (289)
T KOG1616|consen 149 EDSLGNLNNILEVQ 162 (289)
T ss_pred ccccCCcccceEec
Confidence 98 69999999984
No 4
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.30 E-value=1.3e-11 Score=100.52 Aligned_cols=76 Identities=25% Similarity=0.391 Sum_probs=64.2
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEE-EcCCeeEEEEEEECCEeeeCCCCCe
Q 012758 366 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVL-WLYPGTYEIKFIVDGQWKVDPQRES 443 (457)
Q Consensus 366 v~VTFrW~g~-AksV~VaGSFNNW~~~IpMeKd~ss~~~~~~gdkk~GvWstTL-~LPPGrYEYKFIVDGeWt~DPdnPt 443 (457)
..|+|+..+| |++|.|.|+|++|. ..+|+++ +.|.|++++ .|.+|.|.|+|+|||.|+.||.++.
T Consensus 6 ~~v~F~vwAP~A~~V~L~~~~~~~~-~~~m~~~------------~~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~~ 72 (85)
T cd02858 6 RTVTFRLFAPKANEVQVRGSWGGAG-SHPMTKD------------EAGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNPT 72 (85)
T ss_pred CcEEEEEECCCCCEEEEEeecCCCc-cEeCeEC------------CCeEEEEEECCCCCcEEEEEEEECCeEecCCCCCc
Confidence 4799998886 99999999999886 4789874 679999998 5889999999999999999999998
Q ss_pred ec-cCCccceEE
Q 012758 444 VT-KGGICNNIL 454 (457)
Q Consensus 444 Vt-DgGniNNVL 454 (457)
.. +.+..-|++
T Consensus 73 ~~~~~~~~~~~~ 84 (85)
T cd02858 73 TKPGRQVDTSGV 84 (85)
T ss_pred eeecccccceee
Confidence 87 445544443
No 5
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.92 E-value=5.2e-09 Score=80.05 Aligned_cols=70 Identities=30% Similarity=0.478 Sum_probs=60.4
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEcCC-eeEEEEEEECCEeeeCCCCCe
Q 012758 366 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYP-GTYEIKFIVDGQWKVDPQRES 443 (457)
Q Consensus 366 v~VTFrW~g~-AksV~VaGSFNNW~~~IpMeKd~ss~~~~~~gdkk~GvWstTL~LPP-GrYEYKFIVDGeWt~DPdnPt 443 (457)
..|+|++.++ |+.|.|.+.|++|...++|.+. ..|.|.+.+.+.+ |.|.|+|+|||.|..++.++.
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~------------~~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~ 71 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKV------------EDGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPK 71 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEECCCCCcccCEEC------------CCceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChh
Confidence 4789999887 8999999999997667889864 5699999999987 999999999999999998876
Q ss_pred eccC
Q 012758 444 VTKG 447 (457)
Q Consensus 444 VtDg 447 (457)
..+.
T Consensus 72 ~~~~ 75 (83)
T cd02688 72 ADEG 75 (83)
T ss_pred hhcC
Confidence 6653
No 6
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=98.58 E-value=1.7e-07 Score=79.34 Aligned_cols=68 Identities=19% Similarity=0.379 Sum_probs=53.8
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEEc--------CCe-eEEEEEEE-CC
Q 012758 366 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLWL--------YPG-TYEIKFIV-DG 433 (457)
Q Consensus 366 v~VTFrW~g~-AksV~VaGSFNNW~~~-IpMeKd~ss~~~~~~gdkk~GvWstTL~L--------PPG-rYEYKFIV-DG 433 (457)
..++|+..+| |+.|+|+|+||+|+.. .+|.+. +.|+|+++++. +.| .|.|++.. ||
T Consensus 5 ~g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~------------~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G 72 (99)
T cd02854 5 GGVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKD------------EFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSG 72 (99)
T ss_pred CeEEEEEECCCCCEEEEEccCCCCCCcCcccEEC------------CCCEEEEEECCcccccccCCCCCEEEEEEEeCCC
Confidence 4689998887 9999999999999864 689874 68999999864 456 67777766 78
Q ss_pred Ee--eeCCCCCeec
Q 012758 434 QW--KVDPQRESVT 445 (457)
Q Consensus 434 eW--t~DPdnPtVt 445 (457)
+| +.||-.-.+.
T Consensus 73 ~~~~~~DPyA~~~~ 86 (99)
T cd02854 73 EWIDRIPAWIKYVT 86 (99)
T ss_pred CEEEEcCcceeEEE
Confidence 86 5688776655
No 7
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=98.50 E-value=1.1e-07 Score=75.31 Aligned_cols=58 Identities=28% Similarity=0.472 Sum_probs=46.8
Q ss_pred eEEEEEEecC-CceEEEEeeeCC-Cccc-cccCCCCCCCccccccccCCCcEEEEEE--cCCeeEEEEEEECCE
Q 012758 366 EVVEIQYSGD-GEIVEVAGSFNG-WHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW--LYPGTYEIKFIVDGQ 434 (457)
Q Consensus 366 v~VTFrW~g~-AksV~VaGSFNN-W~~~-IpMeKd~ss~~~~~~gdkk~GvWstTL~--LPPGrYEYKFIVDGe 434 (457)
..|+|+..++ |+.|.|.+.|++ |... ++|.+. ...|+|++++. +++|.+.|+|.|+|.
T Consensus 11 ~~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~-----------~~~G~w~~~~~~~~~~g~~~Y~y~i~~~ 73 (85)
T PF02922_consen 11 GGVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRK-----------DDDGVWEVTVPGDLPPGGYYYKYRIDGD 73 (85)
T ss_dssp TEEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEE-----------CTTTEEEEEEEGCGTTTT-EEEEEEEET
T ss_pred CEEEEEEECCCCCEEEEEEEeeecCCCceEEeeec-----------CCCCEEEEEEcCCcCCCCEEEEEEEEeC
Confidence 5899998887 999999999999 8754 789831 37899999998 888988888888754
No 8
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.03 E-value=2e-05 Score=65.22 Aligned_cols=68 Identities=18% Similarity=0.239 Sum_probs=53.3
Q ss_pred EEEEEEecC-CceEEEEeeeCCCc-----cccccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEECCE-----
Q 012758 367 VVEIQYSGD-GEIVEVAGSFNGWH-----HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ----- 434 (457)
Q Consensus 367 ~VTFrW~g~-AksV~VaGSFNNW~-----~~IpMeKd~ss~~~~~~gdkk~GvWstTL~-LPPGrYEYKFIVDGe----- 434 (457)
.++|+..++ |++|.|.. |++|. ..++|.+. ..|+|++.+. +.+|.+ |+|.|+|.
T Consensus 9 ~~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~------------~~gvw~~~v~~~~~g~~-Y~y~i~~~~~~~~ 74 (100)
T cd02860 9 KTTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRG------------ENGVWSVTLDGDLEGYY-YLYEVKVYKGETN 74 (100)
T ss_pred CEEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecC------------CCCEEEEEeCCccCCcE-EEEEEEEeceEEE
Confidence 588998887 99999988 88886 34678763 6899999986 666764 88888875
Q ss_pred eeeCCCCCeeccCC
Q 012758 435 WKVDPQRESVTKGG 448 (457)
Q Consensus 435 Wt~DPdnPtVtDgG 448 (457)
...||-...+...|
T Consensus 75 ~~~DPyA~~~~~~~ 88 (100)
T cd02860 75 EVVDPYAKALSANG 88 (100)
T ss_pred EEcCcccEeEeeCC
Confidence 78899888777533
No 9
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=97.93 E-value=4.3e-05 Score=62.16 Aligned_cols=63 Identities=27% Similarity=0.556 Sum_probs=47.8
Q ss_pred EEEEEEec---CCceEEEEee---eCCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE---CC-
Q 012758 367 VVEIQYSG---DGEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG- 433 (457)
Q Consensus 367 ~VTFrW~g---~AksV~VaGS---FNNW~~~--IpMeKd~ss~~~~~~gdkk~GvWstTL~LPPG-rYEYKFIV---DG- 433 (457)
+|+|.... .++.|+|+|+ |.+|++. ++|... ..+.|++++.||+| .++|||++ +|
T Consensus 2 ~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~------------~~~~W~~~v~l~~~~~~eYKy~~~~~~~~ 69 (95)
T cd05808 2 AVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAA------------TYPVWSGTVDLPAGTAIEYKYIKKDGSGT 69 (95)
T ss_pred eEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCC------------CCCCEEEEEEeCCCCeEEEEEEEECCCCc
Confidence 56777644 4899999995 7899864 678752 56789999999987 79999996 24
Q ss_pred -EeeeCCCC
Q 012758 434 -QWKVDPQR 441 (457)
Q Consensus 434 -eWt~DPdn 441 (457)
.|...++.
T Consensus 70 ~~WE~~~nr 78 (95)
T cd05808 70 VTWESGPNR 78 (95)
T ss_pred EEEecCCCE
Confidence 47666643
No 10
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=97.80 E-value=0.00014 Score=59.28 Aligned_cols=77 Identities=26% Similarity=0.352 Sum_probs=51.4
Q ss_pred EEEEEEecC-CceEEEEeeeCCCcc-ccccCCCCCCCccccccccCCCcEEEEEE-cCCe-eEEEEEEEC-CEe--eeCC
Q 012758 367 VVEIQYSGD-GEIVEVAGSFNGWHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIVD-GQW--KVDP 439 (457)
Q Consensus 367 ~VTFrW~g~-AksV~VaGSFNNW~~-~IpMeKd~ss~~~~~~gdkk~GvWstTL~-LPPG-rYEYKFIVD-GeW--t~DP 439 (457)
.++|+...+ |+.|.|.|+|++|.. ..+|.+. ...|+|.+++. +++| .|.|++..+ |.| +.||
T Consensus 22 ~~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~-----------~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~DP 90 (106)
T cd02855 22 GVRFAVWAPNARRVSVVGDFNGWDGRRHPMRRR-----------GDSGVWELFIPGLGEGELYKYEILGADGHLPLKADP 90 (106)
T ss_pred CEEEEEECCCCCEEEEEEECCCCCCcceecEEC-----------CCCCEEEEEECCCCCCCEEEEEEECCCCCEEEeeCC
Confidence 478997776 999999999999964 3678764 24899999886 6667 444444444 333 4566
Q ss_pred CCCeeccCCccceEE
Q 012758 440 QRESVTKGGICNNIL 454 (457)
Q Consensus 440 dnPtVtDgGniNNVL 454 (457)
-...+......++|+
T Consensus 91 Ya~~~~~~~~~~~~~ 105 (106)
T cd02855 91 YAFYSELRPGTASIV 105 (106)
T ss_pred CceeeEeCCCCeEEe
Confidence 665554333355543
No 11
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=97.71 E-value=5.3e-05 Score=82.55 Aligned_cols=68 Identities=25% Similarity=0.451 Sum_probs=53.5
Q ss_pred CceEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEECCE-----e
Q 012758 364 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ-----W 435 (457)
Q Consensus 364 gLv~VTFrW~g~-AksV~VaGSFNNW~~~-IpMeKd~ss~~~~~~gdkk~GvWstTL~-LPPGrYEYKFIVDGe-----W 435 (457)
|...|+|+..+| |+.|.|+|+||+|+.. .+|... ++.|.|.++++ ++|| +.|||.|++. +
T Consensus 34 g~~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~-----------~~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~ 101 (628)
T COG0296 34 GVSGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDR-----------KESGIWELFVPGAPPG-TRYKYELIDPSGQLRL 101 (628)
T ss_pred CCCceEEEEECCCCCeEEEEeecCCccceecccccC-----------CCCceEEEeccCCCCC-CeEEEEEeCCCCceee
Confidence 556899998887 9999999999999863 344322 36799999999 9999 9999999654 3
Q ss_pred eeCCCCCe
Q 012758 436 KVDPQRES 443 (457)
Q Consensus 436 t~DPdnPt 443 (457)
+.||-.-.
T Consensus 102 ~~DP~a~~ 109 (628)
T COG0296 102 KADPYARR 109 (628)
T ss_pred ccCchhhc
Confidence 66775543
No 12
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=97.71 E-value=0.00014 Score=60.03 Aligned_cols=58 Identities=22% Similarity=0.427 Sum_probs=45.8
Q ss_pred eEEEEEEec---CCceEEEEeeeC---CCcc--ccccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE
Q 012758 366 EVVEIQYSG---DGEIVEVAGSFN---GWHH--RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 431 (457)
Q Consensus 366 v~VTFrW~g---~AksV~VaGSFN---NW~~--~IpMeKd~ss~~~~~~gdkk~GvWstTL~LPPG-rYEYKFIV 431 (457)
+.|+|.... +++.|+|+|+.. +|++ .++|.... +......|++++.||.| .++|||+|
T Consensus 2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~--------~~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNE--------GTENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBES--------SSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhcccccccc--------CCCCCCeEEEEEECcCCCEEEEEEEE
Confidence 578888844 499999999996 8997 37787531 01246799999999998 79999999
No 13
>PRK12313 glycogen branching enzyme; Provisional
Probab=97.56 E-value=0.00024 Score=76.37 Aligned_cols=67 Identities=22% Similarity=0.334 Sum_probs=50.6
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-cCCe-eEEEEEEE-CCEe--eeC
Q 012758 366 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIV-DGQW--KVD 438 (457)
Q Consensus 366 v~VTFrW~g~-AksV~VaGSFNNW~~~-IpMeKd~ss~~~~~~gdkk~GvWstTL~-LPPG-rYEYKFIV-DGeW--t~D 438 (457)
..|+|+..+| |++|.|+|+||+|... .+|.+. ..|+|.++++ +.+| .|.|++.+ +|.| ..|
T Consensus 38 ~gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~------------~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~D 105 (633)
T PRK12313 38 KGTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRR------------ESGVWEGFIPGAKEGQLYKYHISRQDGYQVEKID 105 (633)
T ss_pred ccEEEEEECCCCCEEEEEEecCCCCccccccccc------------CCCEEEEEeCCCCCCCEEEEEEECCCCeEEecCC
Confidence 4799998887 9999999999999864 678763 6799999997 5555 67777654 5765 456
Q ss_pred CCCCee
Q 012758 439 PQRESV 444 (457)
Q Consensus 439 PdnPtV 444 (457)
|-...+
T Consensus 106 Pya~~~ 111 (633)
T PRK12313 106 PFAFYF 111 (633)
T ss_pred CceEEE
Confidence 655443
No 14
>PRK12568 glycogen branching enzyme; Provisional
Probab=97.49 E-value=0.00036 Score=77.33 Aligned_cols=69 Identities=26% Similarity=0.431 Sum_probs=53.3
Q ss_pred CceEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEE---CCEee-
Q 012758 364 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIV---DGQWK- 436 (457)
Q Consensus 364 gLv~VTFrW~g~-AksV~VaGSFNNW~~~-IpMeKd~ss~~~~~~gdkk~GvWstTL~-LPPGrYEYKFIV---DGeWt- 436 (457)
|...|+|+..+| |+.|.|+|+||+|+.+ .+|.+. ..|+|++.++ +.+| ..|||.| ||.+.
T Consensus 136 g~~Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~------------~~GVWelfipg~~~G-~~YKYeI~~~~G~~~~ 202 (730)
T PRK12568 136 EVPGVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQR------------IGGFWELFLPRVEAG-ARYKYAITAADGRVLL 202 (730)
T ss_pred CCCcEEEEEECCCCCEEEEEEecCCCCccceecccC------------CCCEEEEEECCCCCC-CEEEEEEEcCCCeEee
Confidence 445789998887 9999999999999864 688763 6899999985 7777 3567776 78764
Q ss_pred -eCCCCCeec
Q 012758 437 -VDPQRESVT 445 (457)
Q Consensus 437 -~DPdnPtVt 445 (457)
.||-+....
T Consensus 203 k~DPYA~~~e 212 (730)
T PRK12568 203 KADPVARQTE 212 (730)
T ss_pred cCCCcceEee
Confidence 687665543
No 15
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.39 E-value=0.0007 Score=56.61 Aligned_cols=53 Identities=17% Similarity=0.278 Sum_probs=42.3
Q ss_pred EEEEEEecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEE-EcCCeeEEEEEEECC
Q 012758 367 VVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVL-WLYPGTYEIKFIVDG 433 (457)
Q Consensus 367 ~VTFrW~g~-AksV~VaGSFNNW~--~~IpMeKd~ss~~~~~~gdkk~GvWstTL-~LPPGrYEYKFIVDG 433 (457)
.++|+..++ |+.|.|.. |++|. ..++|.++ ..|+|.+.+ .+.+|. .|+|.|||
T Consensus 10 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~------------~~GvW~~~v~~~~~g~-~Y~y~i~g 66 (103)
T cd02856 10 GCNFAVHSENATRIELCL-FDEDGSETRLPLTEE------------YGGVWHGFLPGIKAGQ-RYGFRVHG 66 (103)
T ss_pred CeEEEEECCCCCEEEEEE-EeCCCCEEEEEcccc------------cCCEEEEEECCCCCCC-EEEEEECC
Confidence 478998887 99999998 66664 34688763 579999998 467776 69999999
No 16
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=97.36 E-value=0.0013 Score=54.75 Aligned_cols=67 Identities=27% Similarity=0.447 Sum_probs=50.3
Q ss_pred eEEEEEEec---CCceEEEEeee---CCCccccccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE---CC--
Q 012758 366 EVVEIQYSG---DGEIVEVAGSF---NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG-- 433 (457)
Q Consensus 366 v~VTFrW~g---~AksV~VaGSF---NNW~~~IpMeKd~ss~~~~~~gdkk~GvWstTL~LPPG-rYEYKFIV---DG-- 433 (457)
+.|+|+..+ .++.|+|+|+- .+|++..+|.. ..+.|.+.+.||+| .++|||++ ||
T Consensus 2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~-------------~~~~W~~~~~l~~~~~ieyKy~~~~~~~~v 68 (92)
T cd05818 2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNW-------------TENGWVCDLELDGGELVEYKFVIVKRDGSV 68 (92)
T ss_pred EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCcccc-------------CCCCEEEEEEeCCCCcEEEEEEEEcCCCCE
Confidence 467777755 38999999987 59997677764 24579999999988 89999999 44
Q ss_pred EeeeCCCCCeec
Q 012758 434 QWKVDPQRESVT 445 (457)
Q Consensus 434 eWt~DPdnPtVt 445 (457)
.|...++.-...
T Consensus 69 ~WE~g~Nr~~~~ 80 (92)
T cd05818 69 IWEGGNNRVLEL 80 (92)
T ss_pred EEEeCCCEEEEc
Confidence 387666654333
No 17
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=97.34 E-value=0.00037 Score=77.50 Aligned_cols=63 Identities=16% Similarity=0.303 Sum_probs=47.3
Q ss_pred EEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-------cCCeeEEEEEEEC---CE
Q 012758 367 VVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-------LYPGTYEIKFIVD---GQ 434 (457)
Q Consensus 367 ~VTFrW~g~-AksV~VaGSFNNW~~~-IpMeKd~ss~~~~~~gdkk~GvWstTL~-------LPPGrYEYKFIVD---Ge 434 (457)
.++|+..+| |+.|+|+|+||+|+.. .+|++. ..|+|++.++ ++.|. .|||.|. |.
T Consensus 115 g~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~------------~~GvWe~~ip~~~g~~~~~~G~-~Yky~i~~~~g~ 181 (758)
T PLN02447 115 GITYREWAPGAKAAALIGDFNNWNPNAHWMTKN------------EFGVWEIFLPDADGSPAIPHGS-RVKIRMETPDGR 181 (758)
T ss_pred CEEEEEECCCCCEEEEEEecCCCCCCccCceeC------------CCCEEEEEECCccccccCCCCC-EEEEEEEeCCCc
Confidence 689998777 9999999999999864 689874 6799999986 44553 5667663 54
Q ss_pred --eeeCCCCC
Q 012758 435 --WKVDPQRE 442 (457)
Q Consensus 435 --Wt~DPdnP 442 (457)
++.||-..
T Consensus 182 ~~~r~dpya~ 191 (758)
T PLN02447 182 WVDRIPAWIK 191 (758)
T ss_pred EEeecCchHh
Confidence 45666443
No 18
>PRK14705 glycogen branching enzyme; Provisional
Probab=97.29 E-value=0.00076 Score=78.38 Aligned_cols=66 Identities=33% Similarity=0.602 Sum_probs=50.8
Q ss_pred CceEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEEC---CEe--
Q 012758 364 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD---GQW-- 435 (457)
Q Consensus 364 gLv~VTFrW~g~-AksV~VaGSFNNW~~~-IpMeKd~ss~~~~~~gdkk~GvWstTL~-LPPGrYEYKFIVD---GeW-- 435 (457)
+...|.|+..+| |+.|.|+|+||+|+.. .+|.+. ...|+|++.++ +.+|. .|||.|. |.|
T Consensus 636 ~~~Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~-----------~~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~ 703 (1224)
T PRK14705 636 DVDGVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSL-----------GSSGVWELFIPGVVAGA-CYKFEILTKAGQWVE 703 (1224)
T ss_pred CCCeEEEEEECCCCCEEEEEEEecCCCCCcccceEC-----------CCCCEEEEEECCCCCCC-EEEEEEEcCCCcEEe
Confidence 455789998887 9999999999999865 578753 25799999985 88885 5788874 555
Q ss_pred eeCCCC
Q 012758 436 KVDPQR 441 (457)
Q Consensus 436 t~DPdn 441 (457)
+.||-.
T Consensus 704 k~DPyA 709 (1224)
T PRK14705 704 KADPLA 709 (1224)
T ss_pred cCCccc
Confidence 456654
No 19
>PRK14706 glycogen branching enzyme; Provisional
Probab=97.29 E-value=0.00073 Score=73.67 Aligned_cols=67 Identities=31% Similarity=0.451 Sum_probs=50.8
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEECC---Ee--ee
Q 012758 366 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG---QW--KV 437 (457)
Q Consensus 366 v~VTFrW~g~-AksV~VaGSFNNW~~~-IpMeKd~ss~~~~~~gdkk~GvWstTL~-LPPGrYEYKFIVDG---eW--t~ 437 (457)
..|+|+..+| |++|.|+|+||+|+.. .+|.+. ..|+|.+.++ +.+| ..|||.|+| .+ +.
T Consensus 38 ~Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~------------~~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~ 104 (639)
T PRK14706 38 EGVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRL------------DFGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKM 104 (639)
T ss_pred ccEEEEEECCCCCEEEEEEecCCccccccccccc------------CCCEEEEEECCCCCC-CEEEEEEECCCCCEEecc
Confidence 4689998887 9999999999999864 688864 5699999986 4556 468888864 43 66
Q ss_pred CCCCCeec
Q 012758 438 DPQRESVT 445 (457)
Q Consensus 438 DPdnPtVt 445 (457)
||-.....
T Consensus 105 DPYa~~~~ 112 (639)
T PRK14706 105 DPYGSFFE 112 (639)
T ss_pred CcceEEEe
Confidence 77665444
No 20
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=97.28 E-value=0.0022 Score=53.70 Aligned_cols=74 Identities=28% Similarity=0.563 Sum_probs=51.2
Q ss_pred ceEEEEEEec---CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE---C
Q 012758 365 LEVVEIQYSG---DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---D 432 (457)
Q Consensus 365 Lv~VTFrW~g---~AksV~VaGSF---NNW~~~--IpMeKd~ss~~~~~~gdkk~GvWstTL~LPPG-rYEYKFIV---D 432 (457)
.+.|+|.... .++.|+|+|+- .+|++. ++|.... .+...+.|.+++.||+| .++|||+| |
T Consensus 6 ~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~--------~t~~~~~W~~~v~lp~~~~veYKy~~~~~~ 77 (106)
T cd05811 6 TVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQ--------YTSSNPLWSVTIPLPAGTSFEYKFIRKESD 77 (106)
T ss_pred EEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCccccccc--------CccCCCcEEEEEEeCCCCcEEEEEEEEcCC
Confidence 4678888754 38999999986 489863 5675420 01235789999999988 69999996 2
Q ss_pred C--EeeeCCCCCeecc
Q 012758 433 G--QWKVDPQRESVTK 446 (457)
Q Consensus 433 G--eWt~DPdnPtVtD 446 (457)
| .|...++.-....
T Consensus 78 ~~~~WE~~~nr~~~~~ 93 (106)
T cd05811 78 GSVTWESDPNRSYTVP 93 (106)
T ss_pred CcEEEecCCCeEEECC
Confidence 3 3866664433333
No 21
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=97.27 E-value=0.0022 Score=54.36 Aligned_cols=69 Identities=23% Similarity=0.352 Sum_probs=51.6
Q ss_pred eEEEEEEec-----CCceEEEEeee---CCCcccc-----ccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE
Q 012758 366 EVVEIQYSG-----DGEIVEVAGSF---NGWHHRI-----KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 431 (457)
Q Consensus 366 v~VTFrW~g-----~AksV~VaGSF---NNW~~~I-----pMeKd~ss~~~~~~gdkk~GvWstTL~LPPG-rYEYKFIV 431 (457)
++|+|+... .++.|+|+|+- .+|+... +|.. .....|.+++.||.| ..+|||++
T Consensus 3 ~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~------------~~~~~W~~~~~lp~~~~veyK~v~ 70 (103)
T cd05820 3 IPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLC------------PNWPDWFVVASVPAGTYIEFKFLK 70 (103)
T ss_pred ccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhcccccccccc------------CCCCCEEEEEEcCCCCcEEEEEEE
Confidence 689999853 38999999987 4998632 5542 245689999999999 79999999
Q ss_pred ---CCE--eeeCCCCCeecc
Q 012758 432 ---DGQ--WKVDPQRESVTK 446 (457)
Q Consensus 432 ---DGe--Wt~DPdnPtVtD 446 (457)
||. |...++.-....
T Consensus 71 ~~~~g~v~WE~g~Nr~~~~p 90 (103)
T cd05820 71 APADGTGTWEGGSNHAYTTP 90 (103)
T ss_pred ECCCCCEEEEeCCCEeEECC
Confidence 553 877766554444
No 22
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.24 E-value=0.00092 Score=57.77 Aligned_cols=55 Identities=24% Similarity=0.558 Sum_probs=43.9
Q ss_pred EEEEEEec----CCceEEEEee---eCCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE
Q 012758 367 VVEIQYSG----DGEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 431 (457)
Q Consensus 367 ~VTFrW~g----~AksV~VaGS---FNNW~~~--IpMeKd~ss~~~~~~gdkk~GvWstTL~LPPG-rYEYKFIV 431 (457)
.|+|.... .++.|+|+|+ +.+|++. ++|.... ...+.|++++.||++ .++|||++
T Consensus 2 ~v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~----------~~~~~W~~~v~lp~~~~veYkY~~ 66 (120)
T cd05814 2 RVTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKED----------DDCNLWKASIELPRGVDFQYRYFV 66 (120)
T ss_pred eEEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCC----------CcCCccEEEEEECCCCeEEEEEEE
Confidence 46777655 3899999999 8999854 6787531 145789999999998 89999999
No 23
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=97.23 E-value=0.002 Score=54.04 Aligned_cols=69 Identities=23% Similarity=0.368 Sum_probs=48.5
Q ss_pred ceEEEEEEec----CCceEEEEe---eeCCCccc-cccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE---C
Q 012758 365 LEVVEIQYSG----DGEIVEVAG---SFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---D 432 (457)
Q Consensus 365 Lv~VTFrW~g----~AksV~VaG---SFNNW~~~-IpMeKd~ss~~~~~~gdkk~GvWstTL~LPPG-rYEYKFIV---D 432 (457)
.++|+|.... .++.|+|+| ++.+|+.. .+|.... ....+.|.+++.||+| .++|||++ |
T Consensus 2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~---------~~~~~~W~~~~~lp~~~~veyKyv~~~~~ 72 (99)
T cd05809 2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYY---------NSHSNDWRGTVHLPAGRNIEFKAIKKSKD 72 (99)
T ss_pred ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhcccc---------CCCCCCEEEEEEecCCCcEEEEEEEEcCC
Confidence 3689999743 389999999 56799863 1233210 0245789999999999 79999999 4
Q ss_pred C---EeeeCCCCC
Q 012758 433 G---QWKVDPQRE 442 (457)
Q Consensus 433 G---eWt~DPdnP 442 (457)
| .|...++.-
T Consensus 73 ~~~~~WE~g~nr~ 85 (99)
T cd05809 73 GTNKSWQGGQQSW 85 (99)
T ss_pred CCeeEEecCCCee
Confidence 4 276665543
No 24
>PRK05402 glycogen branching enzyme; Provisional
Probab=97.20 E-value=0.0012 Score=72.53 Aligned_cols=67 Identities=28% Similarity=0.466 Sum_probs=50.0
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-cCCe-eEEEEEEEC-CEe--eeC
Q 012758 366 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIVD-GQW--KVD 438 (457)
Q Consensus 366 v~VTFrW~g~-AksV~VaGSFNNW~~~-IpMeKd~ss~~~~~~gdkk~GvWstTL~-LPPG-rYEYKFIVD-GeW--t~D 438 (457)
..|+|+..+| |++|.|+|+||+|+.. .+|.+. ...|+|.++++ +++| .|.|++..+ |.| ..|
T Consensus 131 ~gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~-----------~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~D 199 (726)
T PRK05402 131 SGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLR-----------GESGVWELFIPGLGEGELYKFEILTADGELLLKAD 199 (726)
T ss_pred CcEEEEEECCCCCEEEEEEEcCCCCCccccceEc-----------CCCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCC
Confidence 4689998887 9999999999999764 678763 26799999985 6777 677777665 454 445
Q ss_pred CCCCe
Q 012758 439 PQRES 443 (457)
Q Consensus 439 PdnPt 443 (457)
|-.-.
T Consensus 200 PYa~~ 204 (726)
T PRK05402 200 PYAFA 204 (726)
T ss_pred CceEE
Confidence 54433
No 25
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.19 E-value=0.0018 Score=52.44 Aligned_cols=73 Identities=14% Similarity=0.043 Sum_probs=51.4
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEEC-CEeeeCCCCCe
Q 012758 366 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD-GQWKVDPQRES 443 (457)
Q Consensus 366 v~VTFrW~g~-AksV~VaGSFNNW~~~IpMeKd~ss~~~~~~gdkk~GvWstTL~LPPGrYEYKFIVD-GeWt~DPdnPt 443 (457)
..++|+..++ |++|.|.... |. .++|.++ ..|+|++++.--+|. .|+|.|+ |..+.||-+..
T Consensus 8 ~~~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~------------~~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~ 71 (85)
T cd02853 8 GGTRFRLWAPDAKRVTLRLDD--GE-EIPMQRD------------GDGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRF 71 (85)
T ss_pred CCEEEEEeCCCCCEEEEEecC--CC-cccCccC------------CCcEEEEEeCCCCCC-eEEEEECCCcCCCCCcccc
Confidence 3589998887 9999999643 53 4788864 679999998533775 4777776 56888998887
Q ss_pred eccCCccceEE
Q 012758 444 VTKGGICNNIL 454 (457)
Q Consensus 444 VtDgGniNNVL 454 (457)
...+.+-.+++
T Consensus 72 ~~~~~~~~s~v 82 (85)
T cd02853 72 QPEGVHGPSQV 82 (85)
T ss_pred CCCCCCCCeEe
Confidence 55432224443
No 26
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.16 E-value=0.0012 Score=56.19 Aligned_cols=59 Identities=25% Similarity=0.415 Sum_probs=44.1
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCc---c--ccccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEECCEe
Q 012758 366 EVVEIQYSGD-GEIVEVAGSFNGWH---H--RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 435 (457)
Q Consensus 366 v~VTFrW~g~-AksV~VaGSFNNW~---~--~IpMeKd~ss~~~~~~gdkk~GvWstTL~-LPPGrYEYKFIVDGeW 435 (457)
..++|+..++ |+.|.|.. |++|+ + .++|.++. .+..|+|.+.+. +.+|. .|+|.|+|.|
T Consensus 7 ~g~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~---------~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~ 72 (119)
T cd02852 7 GGVNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSV---------NRTGDVWHVFVEGLKPGQ-LYGYRVDGPF 72 (119)
T ss_pred CCEEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcc---------cccCCEEEEEECCCCCCC-EEEEEECCCC
Confidence 3588998887 99999999 88886 2 35676531 124699999984 77886 6999999854
No 27
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=97.06 E-value=0.0013 Score=70.16 Aligned_cols=62 Identities=15% Similarity=0.139 Sum_probs=50.5
Q ss_pred EEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEECC-EeeeCCCCCee
Q 012758 368 VEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG-QWKVDPQRESV 444 (457)
Q Consensus 368 VTFrW~g~-AksV~VaGSFNNW~~~IpMeKd~ss~~~~~~gdkk~GvWstTL~-LPPGrYEYKFIVDG-eWt~DPdnPtV 444 (457)
|+|+..+| |++|.|.+. + ..++|.+. ..|+|++++. +.+| |.|+|.||| ..+.||.+...
T Consensus 1 v~FrlwAP~A~~V~L~l~---~-~~~~m~k~------------~~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~ 63 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLN---G-ALHAMQRL------------GDGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQ 63 (542)
T ss_pred CEEEEECCCCCEEEEEeC---C-CEEeCeEC------------CCCEEEEEECCCCCC-CEEEEEEeeeEEecCcccccc
Confidence 57988887 999999973 3 35789874 5799999996 7888 789999999 67889988876
Q ss_pred cc
Q 012758 445 TK 446 (457)
Q Consensus 445 tD 446 (457)
..
T Consensus 64 ~~ 65 (542)
T TIGR02402 64 PD 65 (542)
T ss_pred cc
Confidence 54
No 28
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.05 E-value=0.002 Score=54.12 Aligned_cols=52 Identities=23% Similarity=0.395 Sum_probs=39.9
Q ss_pred EEEEEec---CCceEEEEee---eCCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE
Q 012758 368 VEIQYSG---DGEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 431 (457)
Q Consensus 368 VTFrW~g---~AksV~VaGS---FNNW~~~--IpMeKd~ss~~~~~~gdkk~GvWstTL~LPPG-rYEYKFIV 431 (457)
|+|+... .|+.|+|+|+ ..+|++. ++|... ....|++++.||+| .++|||+|
T Consensus 2 v~F~i~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~------------~~~~W~~~v~lp~~~~veYKY~i 62 (100)
T cd05817 2 VTFKIHYPTQFGEAVYISGNCNQLGNWNPSKAKRMQWN------------EGDLWTVDVGIPESVYIEYKYFV 62 (100)
T ss_pred EEEEEEEEcCCCCEEEEEeCcHHHCCCCccccCcccCC------------CCCCEEEEEEECCCCcEEEEEEE
Confidence 4455433 3899999999 4689864 577642 45689999999988 69999998
No 29
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=97.03 E-value=0.0065 Score=50.86 Aligned_cols=66 Identities=26% Similarity=0.571 Sum_probs=47.6
Q ss_pred EEEEEec----CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe--eEEEEEEE--C--
Q 012758 368 VEIQYSG----DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--TYEIKFIV--D-- 432 (457)
Q Consensus 368 VTFrW~g----~AksV~VaGSF---NNW~~~--IpMeKd~ss~~~~~~gdkk~GvWstTL~LPPG--rYEYKFIV--D-- 432 (457)
|+|+... .++.|+|+|+- .+|++. ++|... ....|.+++.+|++ .++|||++ +
T Consensus 2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~------------~~~~W~~~v~~p~~~~~ieYKyvi~~~~~ 69 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDV------------GFPIWEADIDISKDSFPFEYKYIIANKDS 69 (99)
T ss_pred EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCC------------CCCcEEEEEEeCCCCccEEEEEEEEeCCC
Confidence 5666644 38999999986 589853 678652 45789999999986 59999998 2
Q ss_pred C--EeeeCCCCCeec
Q 012758 433 G--QWKVDPQRESVT 445 (457)
Q Consensus 433 G--eWt~DPdnPtVt 445 (457)
| .|..-++.-...
T Consensus 70 ~~~~WE~g~nr~~~~ 84 (99)
T cd05816 70 GVVSWENGPNRELSA 84 (99)
T ss_pred CcEEEEcCCCeEEEC
Confidence 3 276665544433
No 30
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.95 E-value=0.0029 Score=51.18 Aligned_cols=53 Identities=26% Similarity=0.483 Sum_probs=40.7
Q ss_pred EEEEEec---CCceEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCcEEEEEEcCC--e-eEEEEEEE
Q 012758 368 VEIQYSG---DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYP--G-TYEIKFIV 431 (457)
Q Consensus 368 VTFrW~g---~AksV~VaGSFN---NW~~~--IpMeKd~ss~~~~~~gdkk~GvWstTL~LPP--G-rYEYKFIV 431 (457)
|+|+... .++.|+|+|+.. +|++. ++|... ...+.|.+++.||+ | .++|||++
T Consensus 2 v~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~-----------~~~~~W~~~v~~~~~~~~~~~yKy~~ 65 (96)
T cd05467 2 VRFQVRCTTQFGQSVYVVGSHPELGNWDPAKALRLNTS-----------NSYPLWTGEIPLPAPEGQVIEYKYVI 65 (96)
T ss_pred EEEEEEEECCCCCEEEEEeCcHHhCCcChhcCccccCC-----------CCCCcEEEEEEecCCCCCeEEEEEEE
Confidence 4555543 489999999984 89853 677653 12679999999999 7 79999998
No 31
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.88 E-value=0.0038 Score=51.54 Aligned_cols=53 Identities=28% Similarity=0.511 Sum_probs=41.6
Q ss_pred EEEEEEec----CCceEEEEeee---CCCccccccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE
Q 012758 367 VVEIQYSG----DGEIVEVAGSF---NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 431 (457)
Q Consensus 367 ~VTFrW~g----~AksV~VaGSF---NNW~~~IpMeKd~ss~~~~~~gdkk~GvWstTL~LPPG-rYEYKFIV 431 (457)
+|+|+..+ +++.|+|+|+- .+|+...+|... ..+.|.+++.||+| .++|||++
T Consensus 2 ~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~------------~~~~W~~~v~lp~~~~ieYky~~ 62 (95)
T cd05813 2 NVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYV------------KDGFWSASVSLPVDTHVEWKFVL 62 (95)
T ss_pred eEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCC------------CCCCEEEEEEecCCCcEEEEEEE
Confidence 57777644 35778899976 489877788642 45789999999998 59999998
No 32
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=96.87 E-value=0.0097 Score=49.86 Aligned_cols=74 Identities=22% Similarity=0.256 Sum_probs=50.2
Q ss_pred ceEEEEEEec----CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE---
Q 012758 365 LEVVEIQYSG----DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV--- 431 (457)
Q Consensus 365 Lv~VTFrW~g----~AksV~VaGSF---NNW~~~--IpMeKd~ss~~~~~~gdkk~GvWstTL~LPPG-rYEYKFIV--- 431 (457)
.++|+|.... .++.|+|+|+- .+|++. +.|.... .......|.+++.||+| .++|||++
T Consensus 2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~--------~~~~~~~W~~~~~lp~~~~~eyK~~~~~~ 73 (101)
T cd05807 2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQ--------VVYQYPNWYYDVSVPAGTTIEFKFIKKNG 73 (101)
T ss_pred cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHcccccccc--------CCCcCCcEEEEEEcCCCCcEEEEEEEECC
Confidence 4688888742 38999999987 499864 2222100 01245689999999999 79999999
Q ss_pred CCE--eeeCCCCCeecc
Q 012758 432 DGQ--WKVDPQRESVTK 446 (457)
Q Consensus 432 DGe--Wt~DPdnPtVtD 446 (457)
||. |...++.-....
T Consensus 74 ~~~~~WE~g~nr~~~~p 90 (101)
T cd05807 74 DNTVTWESGSNHTYTAP 90 (101)
T ss_pred CCCEEEEeCCCEEEeCC
Confidence 353 766665544333
No 33
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=96.66 E-value=0.0057 Score=66.09 Aligned_cols=68 Identities=24% Similarity=0.324 Sum_probs=50.9
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEEC---CE--eee
Q 012758 366 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD---GQ--WKV 437 (457)
Q Consensus 366 v~VTFrW~g~-AksV~VaGSFNNW~~~-IpMeKd~ss~~~~~~gdkk~GvWstTL~-LPPGrYEYKFIVD---Ge--Wt~ 437 (457)
..++|+..+| |+.|.|+|+||+|... .+|.+. ...|+|++.++ +.+|. .|+|.|+ |. ++.
T Consensus 28 ~g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~-----------~~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~ 95 (613)
T TIGR01515 28 SGTRFCVWAPNAREVRVAGDFNYWDGREHPMRRR-----------NDNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKA 95 (613)
T ss_pred CcEEEEEECCCCCEEEEEEecCCCCCceecceEe-----------cCCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeC
Confidence 4688998887 9999999999999764 578763 24799999986 46675 5888874 54 467
Q ss_pred CCCCCeec
Q 012758 438 DPQRESVT 445 (457)
Q Consensus 438 DPdnPtVt 445 (457)
||-.-...
T Consensus 96 DPYA~~~~ 103 (613)
T TIGR01515 96 DPYAFYAE 103 (613)
T ss_pred CCCEeeec
Confidence 88665444
No 34
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.50 E-value=0.005 Score=67.73 Aligned_cols=63 Identities=21% Similarity=0.073 Sum_probs=47.2
Q ss_pred EEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEE--CCE--eeeCCCC
Q 012758 367 VVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV--DGQ--WKVDPQR 441 (457)
Q Consensus 367 ~VTFrW~g~-AksV~VaGSFNNW~~~IpMeKd~ss~~~~~~gdkk~GvWstTL~LPPGrYEYKFIV--DGe--Wt~DPdn 441 (457)
-|+|+..+| |++|.|+|+||+ ....+|.+. ...|+|.+.+++..|.. |||.| ||. .+.||-.
T Consensus 29 g~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~-----------~~~G~w~~~ip~~~g~~-YKy~i~~~g~~~~k~DPya 95 (726)
T PRK05402 29 GLVVRALLPGAEEVWVILPGGG-RKLAELERL-----------HPRGLFAGVLPRKGPFD-YRLRVTWGGGEQLIDDPYR 95 (726)
T ss_pred cEEEEEECCCCeEEEEEeecCC-CccccceEc-----------CCCceEEEEecCCCCCC-eEEEEEeCCceeEeccccc
Confidence 578998777 999999999996 334688863 36799999999777832 55555 886 5667765
Q ss_pred C
Q 012758 442 E 442 (457)
Q Consensus 442 P 442 (457)
-
T Consensus 96 f 96 (726)
T PRK05402 96 F 96 (726)
T ss_pred c
Confidence 3
No 35
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=96.36 E-value=0.023 Score=47.88 Aligned_cols=66 Identities=26% Similarity=0.440 Sum_probs=47.1
Q ss_pred EEEEEEe-c---CCceEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE---CC
Q 012758 367 VVEIQYS-G---DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG 433 (457)
Q Consensus 367 ~VTFrW~-g---~AksV~VaGSFN---NW~~~--IpMeKd~ss~~~~~~gdkk~GvWstTL~LPPG-rYEYKFIV---DG 433 (457)
+|+|... + .++.|+|+|+-. +|++. ++|... ....|.+++.||.| ..+|||++ +|
T Consensus 2 ~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~------------~~~~W~~~v~lp~~~~veyKyv~~~~~~ 69 (97)
T cd05810 2 SVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPT------------AYPTWSGSISLPASTNVEWKCLKRNETN 69 (97)
T ss_pred eEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCC------------CCCeEEEEEEcCCCCeEEEEEEEEcCCC
Confidence 5677732 2 489999999874 99854 566532 45689999999999 89999998 22
Q ss_pred -----EeeeCCCCCee
Q 012758 434 -----QWKVDPQRESV 444 (457)
Q Consensus 434 -----eWt~DPdnPtV 444 (457)
.|...++.-..
T Consensus 70 ~~~~v~WE~g~Nr~~~ 85 (97)
T cd05810 70 PTAGVQWQGGGNNQLT 85 (97)
T ss_pred CcceEEEeeCCCEEEe
Confidence 47666555433
No 36
>PLN02316 synthase/transferase
Probab=96.19 E-value=0.078 Score=61.40 Aligned_cols=61 Identities=13% Similarity=0.375 Sum_probs=44.4
Q ss_pred eEEEEEEec------CCceEEEEeeeCCCccccc--cCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEE-CC
Q 012758 366 EVVEIQYSG------DGEIVEVAGSFNGWHHRIK--MDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-DG 433 (457)
Q Consensus 366 v~VTFrW~g------~AksV~VaGSFNNW~~~Ip--MeKd~ss~~~~~~gdkk~GvWstTL~LPPGrYEYKFIV-DG 433 (457)
.+|++-|+. .+.+|+|.|.||+|..... +.. .+..++.++.|.+++.+|+.-|-.-|+. ||
T Consensus 329 ~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~-------~~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg 398 (1036)
T PLN02316 329 DTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKL-------VKSEEKDGDWWYAEVVVPERALVLDWVFADG 398 (1036)
T ss_pred CEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCccccee-------ecccCCCCCEEEEEEecCCCceEEEEEEecC
Confidence 578888862 2789999999999987421 111 1111234557889999999999999997 66
No 37
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=95.71 E-value=0.034 Score=46.39 Aligned_cols=55 Identities=20% Similarity=0.428 Sum_probs=39.8
Q ss_pred EEEEEec---CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE
Q 012758 368 VEIQYSG---DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 431 (457)
Q Consensus 368 VTFrW~g---~AksV~VaGSF---NNW~~~--IpMeKd~ss~~~~~~gdkk~GvWstTL~LPPG-rYEYKFIV 431 (457)
|+|...+ .++.|+|+|+- .+|+.. ++|.... ......|.+++.+|++ .++|||+|
T Consensus 2 l~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~---------~~~~~~W~~~v~~~~~~~veYky~v 65 (101)
T cd05815 2 LSFKLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPSH---------QGDVLVWSGSISVPPGFSSEYNYYV 65 (101)
T ss_pred EEEEEEEEccCCCEEEEEcChHHcCCcChHhcEeeeecC---------CCCCCEEEEEEEeCCCCcEEEEEEE
Confidence 5566543 38999999987 589754 6675310 1234589999999988 69999999
No 38
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=95.49 E-value=0.04 Score=59.49 Aligned_cols=66 Identities=24% Similarity=0.318 Sum_probs=48.0
Q ss_pred EEEEEEecC-CceEEEEeeeCCCcc-----ccccCCCCCCCccccccccCCCcEEEEEE-cCCe-eEEEEEEECCE--ee
Q 012758 367 VVEIQYSGD-GEIVEVAGSFNGWHH-----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIVDGQ--WK 436 (457)
Q Consensus 367 ~VTFrW~g~-AksV~VaGSFNNW~~-----~IpMeKd~ss~~~~~~gdkk~GvWstTL~-LPPG-rYEYKFIVDGe--Wt 436 (457)
.|+|+..+| |++|.|.+ |++|.. .++|.+. ..|+|++.++ +.+| .|.|++..+|. ++
T Consensus 20 ~~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~------------~~gvw~~~i~~~~~g~~Y~y~v~~~~~~~~~ 86 (605)
T TIGR02104 20 KTVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRG------------ENGVWSAVLEGDLHGYFYTYQVCINGKWRET 86 (605)
T ss_pred eeEEEEECCCCCEEEEEE-EcCCCCCccceEEecccC------------CCCEEEEEECCCCCCCEEEEEEEcCCCeEEE
Confidence 489998887 99999997 888853 3678763 5799999996 5666 45555444665 48
Q ss_pred eCCCCCeec
Q 012758 437 VDPQRESVT 445 (457)
Q Consensus 437 ~DPdnPtVt 445 (457)
.||-.....
T Consensus 87 ~DPya~~~~ 95 (605)
T TIGR02104 87 VDPYAKAVT 95 (605)
T ss_pred cCCCcceec
Confidence 898776544
No 39
>PLN02316 synthase/transferase
Probab=94.62 E-value=0.16 Score=59.06 Aligned_cols=55 Identities=27% Similarity=0.464 Sum_probs=42.5
Q ss_pred eEEEEEEec------CCceEEEEeeeCCCcccc------ccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEE
Q 012758 366 EVVEIQYSG------DGEIVEVAGSFNGWHHRI------KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV 431 (457)
Q Consensus 366 v~VTFrW~g------~AksV~VaGSFNNW~~~I------pMeKd~ss~~~~~~gdkk~GvWstTL~LPPGrYEYKFIV 431 (457)
.+|++-|+. +..+|++.|+||.|.++. .|.+. ..++.|.+++.+|...|-..|+-
T Consensus 491 ~~v~v~Yn~~~t~l~~~~ev~~~g~~NrWth~~~~~~~~~m~~~-----------~~g~~~~a~v~vP~da~~mdfvF 557 (1036)
T PLN02316 491 TTVTVLYNPANTVLNGKPEVWFRGSFNRWTHRLGPLPPQKMVPA-----------DNGSHLKATVKVPLDAYMMDFVF 557 (1036)
T ss_pred CEEEEEECCCCCcCCCCceEEEEccccCcCCCCCCCCceeeeec-----------CCCceEEEEEEccccceEEEEEE
Confidence 589998854 268999999999999762 24432 23346689999999999999987
No 40
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=94.28 E-value=0.058 Score=45.00 Aligned_cols=62 Identities=24% Similarity=0.598 Sum_probs=38.0
Q ss_pred EEEEEEec------CCceEEEEeeeCCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEE-CC--Ee
Q 012758 367 VVEIQYSG------DGEIVEVAGSFNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-DG--QW 435 (457)
Q Consensus 367 ~VTFrW~g------~AksV~VaGSFNNW~~~--IpMeKd~ss~~~~~~gdkk~GvWstTL~LPPGrYEYKFIV-DG--eW 435 (457)
+|++.|.. ++..|.+.+.||+|+.. +.|.+.. . ....+.|++++.+|..-|...|+. || .|
T Consensus 3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~~-------~-~~~~~~~~~tv~vP~~a~~~dfvF~dg~~~w 74 (87)
T PF03423_consen 3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKMC-------V-PDEGGWWKATVDVPEDAYVMDFVFNDGAGNW 74 (87)
T ss_dssp EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEES-------S----TTEEEEEEE--TTTSEEEEEEE-SSS-E
T ss_pred EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCcceee-------e-eecCCEEEEEEEEcCCceEEEEEEcCCCCcE
Confidence 67777732 37899999999999875 4566531 0 012789999999999999999988 65 46
Q ss_pred e
Q 012758 436 K 436 (457)
Q Consensus 436 t 436 (457)
-
T Consensus 75 D 75 (87)
T PF03423_consen 75 D 75 (87)
T ss_dssp E
T ss_pred e
Confidence 3
No 41
>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase. The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.
Probab=93.71 E-value=0.36 Score=42.76 Aligned_cols=79 Identities=22% Similarity=0.282 Sum_probs=53.2
Q ss_pred eEEEEEEe----cCCceEEEEeeeCCCccc-----cccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEECCE-
Q 012758 366 EVVEIQYS----GDGEIVEVAGSFNGWHHR-----IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIVDGQ- 434 (457)
Q Consensus 366 v~VTFrW~----g~AksV~VaGSFNNW~~~-----IpMeKd~ss~~~~~~gdkk~GvWstTL~LPPG-rYEYKFIVDGe- 434 (457)
+.|||.|. +....|.|-|..|+++.. ..|.+- .+..+|..++.||.+ +=.|.|+.+-.
T Consensus 2 ~~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl-----------~gTDVW~~t~~lp~d~rgSY~~~p~~~~ 70 (122)
T PF11806_consen 2 CLVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRL-----------PGTDVWYWTYRLPADWRGSYSFIPDVPD 70 (122)
T ss_dssp -EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE------------TTSSEEEEEEEEETT-EEEEEEEEES-T
T ss_pred cEEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeC-----------CCCceEEEEEEECcccEEEEEEEecCcc
Confidence 47999999 446889999999999653 346654 256899999999999 89999997532
Q ss_pred ---------------eeeCCCCCeec-c----CCccceEEE
Q 012758 435 ---------------WKVDPQRESVT-K----GGICNNILR 455 (457)
Q Consensus 435 ---------------Wt~DPdnPtVt-D----gGniNNVL~ 455 (457)
-..||.||... . .|..-++++
T Consensus 71 ~~~~~r~~~r~~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~ 111 (122)
T PF11806_consen 71 ARGAQREWWRAILAQAQADPLNPRPWPNGAQDRGNAASVLE 111 (122)
T ss_dssp -HHHHHHHHHHHGGG-B--TTSSSEEE-TT---SSEEEEEE
T ss_pred cchhHHHHHHHHHhccCCCCCCCCCCCCCccccccccCcee
Confidence 35699999765 2 367777765
No 42
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=93.69 E-value=0.57 Score=41.45 Aligned_cols=60 Identities=20% Similarity=0.366 Sum_probs=40.1
Q ss_pred EEEEEE----ecCCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe----eEEEEEEE
Q 012758 367 VVEIQY----SGDGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG----TYEIKFIV 431 (457)
Q Consensus 367 ~VTFrW----~g~AksV~VaGSF---NNW~~~--IpMeKd~ss~~~~~~gdkk~GvWstTL~LPPG----rYEYKFIV 431 (457)
.|+|.. -.++++|+|+|+- .+|+.. ++|...... ........|.+++.||+| .++|||+.
T Consensus 2 ~~~f~~~~~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt-----~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~ 74 (112)
T cd05806 2 LFRFGVVLTFADRDTELLVLGSRPELGSWDPQRAVPMRPARKA-----LSPQEPSLWLGEVELSEPGSEDTFWYKFLK 74 (112)
T ss_pred EEEEEEEEeecCCCCEEEEEECchhcCCCCccccccccccccc-----ccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence 355554 3368999999976 599864 566542100 000134579999999996 69999998
No 43
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=93.40 E-value=0.27 Score=51.09 Aligned_cols=82 Identities=18% Similarity=0.198 Sum_probs=56.7
Q ss_pred CCCceEEEEEEecC-C-------ceEEEEeeeCCC------ccccccCCCCCCCccccccccCCCcEEEEEEcCCe-eEE
Q 012758 362 LSGLEVVEIQYSGD-G-------EIVEVAGSFNGW------HHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYE 426 (457)
Q Consensus 362 LsgLv~VTFrW~g~-A-------ksV~VaGSFNNW------~~~IpMeKd~ss~~~~~~gdkk~GvWstTL~LPPG-rYE 426 (457)
..+.+.|||-|.++ + +.|+|- .|+. ..+..|.+- .+..+|..++.||.. +-.
T Consensus 35 ~~~~~~vTFlwr~~~~~~~~~~~~~v~~~--~n~~tdh~~~~~~~~l~rl-----------~~tDvW~~~~~~p~~~r~s 101 (411)
T PRK10439 35 DDGMVRVTFWWRDPQGDEEHSTIRRVWIY--INGVTDHHQNSQPQSLQRI-----------AGTDVWQWSTELSANWRGS 101 (411)
T ss_pred CCCcEEEEEEeeCCCCCcccccceeEEEe--CCCCCCcCccCCcchhhcc-----------CCCceEEEEEEECcccEEE
Confidence 35668999999874 3 358873 2333 333468775 367899999999999 899
Q ss_pred EEEEEC---C-------------------------EeeeCCCCCeecc--CCccceEEEe
Q 012758 427 IKFIVD---G-------------------------QWKVDPQRESVTK--GGICNNILRV 456 (457)
Q Consensus 427 YKFIVD---G-------------------------eWt~DPdnPtVtD--gGniNNVL~V 456 (457)
|+|+++ + .-+.||.||.... .|...|+|.+
T Consensus 102 Y~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~l 161 (411)
T PRK10439 102 YCFIPTERDDIFSAFAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEM 161 (411)
T ss_pred EEEEeccccccccccccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccC
Confidence 999993 1 1147999997653 2444577654
No 44
>PLN02950 4-alpha-glucanotransferase
Probab=93.16 E-value=0.55 Score=53.98 Aligned_cols=71 Identities=20% Similarity=0.373 Sum_probs=52.9
Q ss_pred CceEEEEEEec----CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe--eEEEEEEE-
Q 012758 364 GLEVVEIQYSG----DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--TYEIKFIV- 431 (457)
Q Consensus 364 gLv~VTFrW~g----~AksV~VaGSF---NNW~~~--IpMeKd~ss~~~~~~gdkk~GvWstTL~LPPG--rYEYKFIV- 431 (457)
..++|+|.... .++.|+|+|+- .+|++. ++|.. .....|.+++.+|++ ..+|||++
T Consensus 151 ~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~------------~~~p~W~~~v~lp~~~~~~EYKyv~~ 218 (909)
T PLN02950 151 DEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNY------------TGDSIWEADCLVPKSDFPIKYKYALQ 218 (909)
T ss_pred CceeEEEEEecCccCCCCeEEEEechhhcCCCCccccccccc------------CCCCcEEEEEEecCCCceEEEEEEEE
Confidence 34788888744 38999999987 499864 45653 246789999999988 59999998
Q ss_pred --CCE--eeeCCCCCeecc
Q 012758 432 --DGQ--WKVDPQRESVTK 446 (457)
Q Consensus 432 --DGe--Wt~DPdnPtVtD 446 (457)
+|. |-..++.-...+
T Consensus 219 ~~~g~v~WE~g~NR~~~~p 237 (909)
T PLN02950 219 TAEGLVSLELGVNRELSLD 237 (909)
T ss_pred cCCCceEEeeCCCceeecC
Confidence 443 877777655544
No 45
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=93.07 E-value=0.25 Score=54.78 Aligned_cols=55 Identities=22% Similarity=0.371 Sum_probs=42.2
Q ss_pred EEEEEEecC-CceEEEEeeeCCCcc----ccccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEECCEe
Q 012758 367 VVEIQYSGD-GEIVEVAGSFNGWHH----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 435 (457)
Q Consensus 367 ~VTFrW~g~-AksV~VaGSFNNW~~----~IpMeKd~ss~~~~~~gdkk~GvWstTL~-LPPGrYEYKFIVDGeW 435 (457)
.|+|+..++ |+.|.|. -|++|.. .++|.+. ..|+|.++++ +.+|.| |+|.|+|.|
T Consensus 15 g~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~~------------~~gvW~~~v~~~~~g~~-Y~yrv~g~~ 75 (688)
T TIGR02100 15 GVNFALFSANAEKVELC-LFDAQGEKEEARLPLPER------------TDDIWHGYLPGAQPGQL-YGYRVHGPY 75 (688)
T ss_pred cEEEEEECCCCCEEEEE-EEcCCCCceeeEEecccC------------CCCEEEEEECCCCCCCE-EEEEEeeee
Confidence 589998887 9999996 6766542 3577653 5799999995 778875 999999853
No 46
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=91.69 E-value=0.43 Score=55.91 Aligned_cols=66 Identities=15% Similarity=0.231 Sum_probs=48.4
Q ss_pred EEEEEEecC-CceEEEEee-eCCCcc---ccccCCCCCCCccccccccCCCcEEEEEE-cCCe-----eEEEEEEECC--
Q 012758 367 VVEIQYSGD-GEIVEVAGS-FNGWHH---RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-----TYEIKFIVDG-- 433 (457)
Q Consensus 367 ~VTFrW~g~-AksV~VaGS-FNNW~~---~IpMeKd~ss~~~~~~gdkk~GvWstTL~-LPPG-----rYEYKFIVDG-- 433 (457)
.++|+..+| |++|.|.+- +++|.. .++|.+. ..|+|++.+. +.+| -|.|+|.|+|
T Consensus 328 ~v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~------------~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~ 395 (1111)
T TIGR02102 328 TVTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKG------------DRGVWEVQLTKENTGIDSLTGYYYHYEITRGG 395 (1111)
T ss_pred CEEEEEECCCCCEEEEEEEeCCCCCCceeeEecccC------------CCCEEEEEECCcccCcccCCCceEEEEEECCC
Confidence 388998887 999999984 456654 4788863 6899999986 5543 3688888876
Q ss_pred --EeeeCCCCCee
Q 012758 434 --QWKVDPQRESV 444 (457)
Q Consensus 434 --eWt~DPdnPtV 444 (457)
....||-+..+
T Consensus 396 ~~~~~~DPYA~al 408 (1111)
T TIGR02102 396 DKVLALDPYAKSL 408 (1111)
T ss_pred ceEEEeChhheEE
Confidence 45778866543
No 47
>PLN02950 4-alpha-glucanotransferase
Probab=91.39 E-value=0.98 Score=51.99 Aligned_cols=68 Identities=18% Similarity=0.423 Sum_probs=48.4
Q ss_pred ceEEEEEEec---CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE---C
Q 012758 365 LEVVEIQYSG---DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---D 432 (457)
Q Consensus 365 Lv~VTFrW~g---~AksV~VaGSF---NNW~~~--IpMeKd~ss~~~~~~gdkk~GvWstTL~LPPG-rYEYKFIV---D 432 (457)
.+.|+|..++ .|++|+|+|+- .+|+.. ++|... .......|++++.||+| ..+|||++ +
T Consensus 8 ~V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~---------~~~d~~~W~~~v~lp~~~~ieYKYv~v~~~ 78 (909)
T PLN02950 8 SVTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPV---------HQGDELVWEGSVSVPEGFSCEYSYYVVDDN 78 (909)
T ss_pred cEEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccc---------cCCCCCeEEEEEEecCCCeEEEEEEEEeCC
Confidence 3677787754 38999999988 489854 677532 11234589999999988 79999995 4
Q ss_pred CE---eeeCCCC
Q 012758 433 GQ---WKVDPQR 441 (457)
Q Consensus 433 Ge---Wt~DPdn 441 (457)
|. |-..++.
T Consensus 79 g~vi~WE~g~NR 90 (909)
T PLN02950 79 KNVLRWEAGKKR 90 (909)
T ss_pred CceeeeecCCCe
Confidence 43 7666643
No 48
>PLN02960 alpha-amylase
Probab=90.98 E-value=0.47 Score=54.56 Aligned_cols=59 Identities=19% Similarity=0.325 Sum_probs=42.2
Q ss_pred EEEEEEec-CCceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEE--EcCCee-------EEEEEEEC
Q 012758 367 VVEIQYSG-DGEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVL--WLYPGT-------YEIKFIVD 432 (457)
Q Consensus 367 ~VTFrW~g-~AksV~VaGSFNNW~~~-IpMeKd~ss~~~~~~gdkk~GvWstTL--~LPPGr-------YEYKFIVD 432 (457)
.|.|.-.+ +|..+.|+|+||||++. ..|.+ +.-+..+-|+|.+++ .|..|. -||.|..|
T Consensus 129 ~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (897)
T PLN02960 129 RVDFMEWAPGARYCSLVGDFNNWSPTENRARE-------GYFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDD 198 (897)
T ss_pred CeEEEEEcCCceeEEEeecccCCCcccchhhc-------ccccccccceEEEEechhhhcCCCcchhhhhhhccccc
Confidence 67777544 59999999999999986 34442 112335789999998 587773 36777775
No 49
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=88.85 E-value=1.7 Score=50.22 Aligned_cols=68 Identities=19% Similarity=0.236 Sum_probs=48.2
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEEC------CE-
Q 012758 366 EVVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD------GQ- 434 (457)
Q Consensus 366 v~VTFrW~g~-AksV~VaGSFNNW~--~~IpMeKd~ss~~~~~~gdkk~GvWstTL~-LPPGrYEYKFIVD------Ge- 434 (457)
..|+|+..+| |+.|.|.+-+++|. ..++|.++ ...|+|+++++ ...|.| |+|.|+ |+
T Consensus 135 ~gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~-----------~~~GVWsv~v~g~~~G~~-Y~Y~V~v~~p~~G~v 202 (898)
T TIGR02103 135 SGVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRD-----------STSGVWSAEGGSSWKGAY-YRYEVTVYHPSTGKV 202 (898)
T ss_pred CcEEEEEECCCCCEEEEEEEcCCCCccceEeCccC-----------CCCCEEEEEECcCCCCCE-eEEEEEEecCCCCeE
Confidence 3689998887 99999997776664 23678763 25799999985 556653 777775 54
Q ss_pred ---eeeCCCCCeec
Q 012758 435 ---WKVDPQRESVT 445 (457)
Q Consensus 435 ---Wt~DPdnPtVt 445 (457)
...||-.-...
T Consensus 203 ~~~~v~DPYA~als 216 (898)
T TIGR02103 203 ETYLVTDPYSVSLS 216 (898)
T ss_pred CCeEEeCcCcceEc
Confidence 36788766554
No 50
>PRK03705 glycogen debranching enzyme; Provisional
Probab=88.78 E-value=1 Score=50.03 Aligned_cols=55 Identities=25% Similarity=0.441 Sum_probs=41.8
Q ss_pred EEEEEEecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEECCEe
Q 012758 367 VVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 435 (457)
Q Consensus 367 ~VTFrW~g~-AksV~VaGSFNNW~--~~IpMeKd~ss~~~~~~gdkk~GvWstTL~-LPPGrYEYKFIVDGeW 435 (457)
.|+|+..++ |+.|.|.. |++|. ..++|.+ +..|+|.+.++ +.+|. .|+|.|+|.|
T Consensus 20 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~------------~~~gvW~~~v~~~~~G~-~Y~yrv~g~~ 78 (658)
T PRK03705 20 GVNFTLFSAHAERVELCV-FDENGQEQRYDLPA------------RSGDIWHGYLPGARPGL-RYGYRVHGPW 78 (658)
T ss_pred CEEEEEECCCCCEEEEEE-EcCCCCeeeEeeee------------ccCCEEEEEECCCCCCC-EEEEEEcccc
Confidence 589998887 99999997 77653 2467865 35789999985 66775 4999999843
No 51
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=88.23 E-value=2.6 Score=34.77 Aligned_cols=58 Identities=16% Similarity=0.068 Sum_probs=37.8
Q ss_pred eEEEEEEec---CCceEEEEeeeCC--Ccc-ccccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEE
Q 012758 366 EVVEIQYSG---DGEIVEVAGSFNG--WHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV 431 (457)
Q Consensus 366 v~VTFrW~g---~AksV~VaGSFNN--W~~-~IpMeKd~ss~~~~~~gdkk~GvWstTL~LPPGrYEYKFIV 431 (457)
.+|+|++.. +...|.|.-.-+. |.. .++|.+... +.....|.+++.++.|++.|.|+|
T Consensus 16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~--------~~~~~~~~~~i~~~~~~~~Y~F~l 79 (116)
T cd02857 16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGS--------DELFDYWEATLPPPTGRLRYYFEL 79 (116)
T ss_pred CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeee--------CCceeEEEEEEecCCcEEEEEEEE
Confidence 455555533 3688888765443 222 478876521 112246999999888999999999
No 52
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=82.64 E-value=4.4 Score=48.11 Aligned_cols=56 Identities=25% Similarity=0.388 Sum_probs=43.2
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc----cccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEECCEe
Q 012758 366 EVVEIQYSGD-GEIVEVAGSFNGWHHR----IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 435 (457)
Q Consensus 366 v~VTFrW~g~-AksV~VaGSFNNW~~~----IpMeKd~ss~~~~~~gdkk~GvWstTL~-LPPGrYEYKFIVDGeW 435 (457)
..|+|+...+ |+.|.|. -|+.|... ++|.. +..|+|.+.+. +.+|. .|+|.|+|.|
T Consensus 23 ~gv~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~------------~~g~vW~~~i~~~~~g~-~Ygyrv~g~~ 84 (1221)
T PRK14510 23 GGVNLALFSGAAERVEFC-LFDLWGVREEARIKLPG------------RTGDVWHGFIVGVGPGA-RYGNRQEGPG 84 (1221)
T ss_pred CeEEEEEECCCCCEEEEE-EEECCCCCeeEEEECCC------------CcCCEEEEEEccCCCCc-EEEEEeccCC
Confidence 3689998776 9999997 89988642 45543 35789998875 88897 5999999854
No 53
>PLN02877 alpha-amylase/limit dextrinase
Probab=68.71 E-value=17 Score=42.83 Aligned_cols=64 Identities=14% Similarity=0.268 Sum_probs=42.6
Q ss_pred EEEEEEecC-CceEEEEeeeCCCcc-----ccccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEEC------C
Q 012758 367 VVEIQYSGD-GEIVEVAGSFNGWHH-----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD------G 433 (457)
Q Consensus 367 ~VTFrW~g~-AksV~VaGSFNNW~~-----~IpMeKd~ss~~~~~~gdkk~GvWstTL~-LPPGrYEYKFIVD------G 433 (457)
.++|+..+| |+.|.|.- |++|.. .++|. ...|+|++++. ...| +.|+|.|+ |
T Consensus 223 g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~-------------~~~GVWsv~v~~~~~G-~~Y~Y~V~v~~p~~g 287 (970)
T PLN02877 223 AVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLK-------------ESNGVWSVEGPKSWEG-CYYVYEVSVYHPSTG 287 (970)
T ss_pred CEEEEEECCCCCEEEEEE-ecCCCCccceEEeccc-------------CCCCEEEEEeccCCCC-CeeEEEEeecccCCC
Confidence 689998887 99999984 665532 13454 25899999986 4456 34777775 3
Q ss_pred E----eeeCCCCCeec
Q 012758 434 Q----WKVDPQRESVT 445 (457)
Q Consensus 434 e----Wt~DPdnPtVt 445 (457)
. ...||-.....
T Consensus 288 ~~~~~~v~DPYA~als 303 (970)
T PLN02877 288 KVETCYANDPYARGLS 303 (970)
T ss_pred cccccccCCccceEEe
Confidence 2 24677665443
No 54
>PLN03244 alpha-amylase; Provisional
Probab=64.75 E-value=14 Score=42.86 Aligned_cols=60 Identities=18% Similarity=0.393 Sum_probs=40.6
Q ss_pred EEEEE-EecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEE--EcCCee----E---EEEEEEC
Q 012758 367 VVEIQ-YSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVL--WLYPGT----Y---EIKFIVD 432 (457)
Q Consensus 367 ~VTFr-W~g~AksV~VaGSFNNW~~~IpMeKd~ss~~~~~~gdkk~GvWstTL--~LPPGr----Y---EYKFIVD 432 (457)
.++|. |.-+|.--.|+|+||||.+.-...+. +.-+..+-|+|.+.+ .|..|. | +|.|.-|
T Consensus 132 ~~~~~ewapga~~~~~~gdfn~w~~~~~~~r~------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (872)
T PLN03244 132 RVDFMDWAPGARYCAIIGDFNGWSPTENAARE------GHFGHDDYGYWFIILEDKLREGEEPDELYFQQYNYVDD 201 (872)
T ss_pred CceeEeecCCcceeeeeccccCCCcccccccc------ccccccccceEEEEechhhhcCCCchhhhHhhhccccc
Confidence 45555 66669999999999999986433332 112335779999988 577773 3 5666554
No 55
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=62.58 E-value=8.8 Score=43.83 Aligned_cols=41 Identities=24% Similarity=0.484 Sum_probs=30.9
Q ss_pred EEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE
Q 012758 368 VEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW 419 (457)
Q Consensus 368 VTFrW~g~-AksV~VaGSFNNW~~~-IpMeKd~ss~~~~~~gdkk~GvWstTL~ 419 (457)
|.|+-.++ ++.|.++|+||+|+.. ..|.. ...-|.|++.++
T Consensus 115 v~~~ewaP~a~~~s~~gd~n~W~~~~~~~~~-----------k~~~g~w~i~l~ 157 (757)
T KOG0470|consen 115 VDFTEWAPLAEAVSLIGDFNNWNPSSNELKP-----------KDDLGVWEIDLP 157 (757)
T ss_pred eeeeeecccccccccccccCCCCCcccccCc-----------ccccceeEEecC
Confidence 88886665 9999999999999864 22331 136799999886
No 56
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=61.44 E-value=23 Score=30.44 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=40.6
Q ss_pred EEEEEEe-cCCceEEEE-eeeCCC----c-cccccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEE--CCE-ee
Q 012758 367 VVEIQYS-GDGEIVEVA-GSFNGW----H-HRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV--DGQ-WK 436 (457)
Q Consensus 367 ~VTFrW~-g~AksV~Va-GSFNNW----~-~~IpMeKd~ss~~~~~~gdkk~GvWstTL~LPPGrYEYKFIV--DGe-Wt 436 (457)
.|+|+-. ++.++|.|. |+-..| . ..++|.+.. .+..-..|.+++.++..+..|.|.| +|+ |.
T Consensus 24 ~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~--------~~~~fDyye~~l~~~~~r~~Y~F~l~~~~~~~~ 95 (120)
T PF02903_consen 24 HIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIA--------SDELFDYYEATLKLPEKRLRYYFELEDGGETYY 95 (120)
T ss_dssp EEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEE--------EESSEEEEEEEEE-TTSEEEEEEEEEETTEEEE
T ss_pred EEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEE--------eCCCeEEEEEEEECCCCeEEEEEEEEeCCEEEE
Confidence 4444443 347899886 565555 2 126787641 1223347899999999999999988 344 55
Q ss_pred eCCCC
Q 012758 437 VDPQR 441 (457)
Q Consensus 437 ~DPdn 441 (457)
++..-
T Consensus 96 y~~~G 100 (120)
T PF02903_consen 96 YGERG 100 (120)
T ss_dssp EETTE
T ss_pred EeCCc
Confidence 55444
No 57
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=58.61 E-value=17 Score=30.08 Aligned_cols=59 Identities=25% Similarity=0.263 Sum_probs=39.2
Q ss_pred ceEEEEEEecC---CceEEEEeee-CCCccccccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEE-C-CEeeeC
Q 012758 365 LEVVEIQYSGD---GEIVEVAGSF-NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-D-GQWKVD 438 (457)
Q Consensus 365 Lv~VTFrW~g~---AksV~VaGSF-NNW~~~IpMeKd~ss~~~~~~gdkk~GvWstTL~LPPGrYEYKFIV-D-GeWt~D 438 (457)
.-.|.+.+.++ -..|+|.+.= ..| .+|.+. -...|.+.-.++.|-+.+|+-. | |+|...
T Consensus 13 ~l~v~v~n~gG~gdi~~Vevk~~~s~~W---~~m~r~------------wGa~W~~~~~~~~~pls~Rvts~~~G~~vv~ 77 (82)
T PF01357_consen 13 YLAVLVKNVGGDGDIKAVEVKQSGSGNW---IPMKRS------------WGAVWQIDSNPPGGPLSFRVTSGDSGQTVVA 77 (82)
T ss_dssp EEEEEEEECCTTS-EEEEEEEETTSSS----EE-EEE------------CTTEEEEE-SS--SSEEEEEEETTTSEEEEE
T ss_pred EEEEEEEEcCCCccEEEEEEEeCCCCCc---eEeecC------------cCceEEECCCCcCCCEEEEEEEcCCCeEEEE
Confidence 35677788765 3689999444 458 578863 3569998877777899999988 7 887654
No 58
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=53.35 E-value=57 Score=28.30 Aligned_cols=69 Identities=20% Similarity=0.161 Sum_probs=39.0
Q ss_pred eEEEEEEecC--CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEcCCe--------eEEEEEEECCE
Q 012758 366 EVVEIQYSGD--GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--------TYEIKFIVDGQ 434 (457)
Q Consensus 366 v~VTFrW~g~--AksV~VaGSFNNW~~~IpMeKd~ss~~~~~~gdkk~GvWstTL~LPPG--------rYEYKFIVDGe 434 (457)
...++....- .+.|.|.=+||+|.....+.-.................|..+++|++. .+-.+|.+.|.
T Consensus 21 L~G~V~V~NlayeK~V~VryT~D~W~t~~d~~a~y~~~~~~~~~~~~~d~F~F~i~l~~~~~~~~~~lef~I~Y~~~g~ 99 (113)
T PF03370_consen 21 LSGTVRVRNLAYEKEVTVRYTFDNWRTFSDVPASYVSSCPGPSPSGNYDRFSFSIPLPDLLPPEGGRLEFCIRYEVNGQ 99 (113)
T ss_dssp EEEEEEEE-SSSSEEEEEEEETSCTSSCCEEEEEEEE---EESTTSSEEEEEEEEE-SSE--T-TS-SEEEEEEEETTE
T ss_pred EEEEEEEEcCCCCeEEEEEEeeCCCCceeEEeeEEeccccCCCCCCcccEEEEEEECCcccccCCceEEEEEEEEeCCC
Confidence 3445555543 689999999999976533221000000000111233478888888754 57889999996
No 59
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=44.54 E-value=64 Score=29.59 Aligned_cols=49 Identities=14% Similarity=0.229 Sum_probs=33.9
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEE
Q 012758 366 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIK 428 (457)
Q Consensus 366 v~VTFrW~g~-AksV~VaGSFNNW~~~IpMeKd~ss~~~~~~gdkk~GvWstTL~LPPGrYEYK 428 (457)
-+|+|.|... +..|...++..-|... .+.- +.+..|+.++.- ||.|.|+
T Consensus 62 DTVtw~~~d~~~Hnv~~~~~~~~~g~~-~~~~------------~~~~s~~~Tfe~-~G~Y~Y~ 111 (128)
T COG3794 62 DTVTWVNTDSVGHNVTAVGGMDPEGSG-TLKA------------GINESFTHTFET-PGEYTYY 111 (128)
T ss_pred CEEEEEECCCCCceEEEeCCCCccccc-cccc------------CCCcceEEEecc-cceEEEE
Confidence 4799999887 9999999988555432 2211 234466666655 9999986
No 60
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=43.89 E-value=36 Score=24.48 Aligned_cols=30 Identities=23% Similarity=0.572 Sum_probs=23.5
Q ss_pred HHHHHHHHhhCCCCCCCCChHHHhhhcchhHHHHHHh
Q 012758 66 NDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRR 102 (457)
Q Consensus 66 ~~~~ef~~~~~l~~~~~psmkels~hgr~dlanivrr 102 (457)
+||++||...|+|-..-. .-|++|-+.||+
T Consensus 7 ~~L~~wL~~~gi~~~~~~-------~~rd~Ll~~~k~ 36 (38)
T PF10281_consen 7 SDLKSWLKSHGIPVPKSA-------KTRDELLKLAKK 36 (38)
T ss_pred HHHHHHHHHcCCCCCCCC-------CCHHHHHHHHHH
Confidence 689999999999865443 567888888775
No 61
>PRK10785 maltodextrin glucosidase; Provisional
Probab=42.40 E-value=86 Score=34.53 Aligned_cols=61 Identities=13% Similarity=0.158 Sum_probs=39.1
Q ss_pred eEEEEEEecC--CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEcC--CeeEEEEEEE--CCE
Q 012758 366 EVVEIQYSGD--GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLY--PGTYEIKFIV--DGQ 434 (457)
Q Consensus 366 v~VTFrW~g~--AksV~VaGSFNNW~~~IpMeKd~ss~~~~~~gdkk~GvWstTL~LP--PGrYEYKFIV--DGe 434 (457)
..|+++.... ...|.|.-.+++-...++|.+... +.....|.++++++ ++++.|.|.| +|.
T Consensus 21 ~~~~lr~~~~~~~~~v~l~~~~~~~~~~~~m~~~~~--------~~~~~~~~~~~~~~~~~~~~~Y~F~l~~~~~ 87 (598)
T PRK10785 21 LLITLWLTGEDPPQRVMLRCEPDNEEYLLPMEKQRS--------QPQVTAWRASLPLNSGQPRRRYSFKLLWHDR 87 (598)
T ss_pred EEEEEEEcCCCceEEEEEEEEcCCCEEEEEeEEeec--------CCCceEEEEEEEcCCCCceEEEEEEEEeCCE
Confidence 4555554432 578888766666545578887521 11223699999886 7889999988 554
No 62
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=41.98 E-value=28 Score=26.77 Aligned_cols=44 Identities=23% Similarity=0.397 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhhCCCCC-CCCChHHHhhhcchhHHHHHHhhhHHH
Q 012758 62 EELYNDLREFLSTVGLSES-HVPSMKELSAHGRDDLANIVRRRGYKF 107 (457)
Q Consensus 62 ~el~~~~~ef~~~~~l~~~-~~psmkels~hgr~dlanivrrrgyk~ 107 (457)
+.++..|++.+.+-.+|.| .+||..+|.++=. .....=|+.|+.
T Consensus 3 ~~i~~~l~~~I~~g~~~~g~~lps~~~la~~~~--vsr~tvr~al~~ 47 (64)
T PF00392_consen 3 EQIYDQLRQAILSGRLPPGDRLPSERELAERYG--VSRTTVREALRR 47 (64)
T ss_dssp HHHHHHHHHHHHTTSS-TTSBE--HHHHHHHHT--S-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCEeCCHHHHHHHhc--cCCcHHHHHHHH
Confidence 4688999999999999998 7899999988633 333333444443
No 63
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.57 E-value=1.1e+02 Score=31.64 Aligned_cols=31 Identities=35% Similarity=0.353 Sum_probs=23.6
Q ss_pred chhhhhhhhhhhhhHHHHHhHHHHHHHHHhH
Q 012758 298 NQLEIDHLKFMLHQKEMELSRLKEQIEKEKL 328 (457)
Q Consensus 298 ~~~Ei~~Lk~m~~QkElE~~rak~~ve~~K~ 328 (457)
-.-||++|+-|||||..++.---.||.+-|+
T Consensus 230 lkeeia~Lkk~L~qkdq~ileKdkqisnLKa 260 (305)
T KOG3990|consen 230 LKEEIARLKKLLHQKDQLILEKDKQISNLKA 260 (305)
T ss_pred HHHHHHHHHHHHhhhHHHHHhhhhhhhccCc
Confidence 3569999999999999777665556655554
No 64
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=41.24 E-value=53 Score=35.00 Aligned_cols=25 Identities=12% Similarity=0.290 Sum_probs=21.7
Q ss_pred CCCcEEEEE--EcCCeeEEEEEEECCE
Q 012758 410 KSRLWSTVL--WLYPGTYEIKFIVDGQ 434 (457)
Q Consensus 410 k~GvWstTL--~LPPGrYEYKFIVDGe 434 (457)
.+|+|+..+ ..+||.|+.++.+||.
T Consensus 169 ~DGvFT~~l~l~~~~G~Y~~~v~~~n~ 195 (374)
T TIGR03503 169 GDGIFTGEFNLDVAPGEYRPTYQSRNP 195 (374)
T ss_pred CCceEEEEeeccCCCceEEEEEEEcCc
Confidence 689999875 5779999999999984
No 65
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=38.87 E-value=32 Score=24.72 Aligned_cols=33 Identities=27% Similarity=0.254 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhCCCC-CCCCChHHHhhhcchhHH
Q 012758 65 YNDLREFLSTVGLSE-SHVPSMKELSAHGRDDLA 97 (457)
Q Consensus 65 ~~~~~ef~~~~~l~~-~~~psmkels~hgr~dla 97 (457)
+..|+..+....+++ ..+||.+||+++=....+
T Consensus 2 ~~~l~~~i~~~~~~~~~~l~s~~~la~~~~vs~~ 35 (60)
T smart00345 2 AERLREDIVSGELRPGDKLPSERELAAQLGVSRT 35 (60)
T ss_pred HHHHHHHHHcCCCCCCCcCcCHHHHHHHHCCCHH
Confidence 566777777777654 468999999987544433
No 66
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=38.38 E-value=75 Score=29.09 Aligned_cols=74 Identities=24% Similarity=0.303 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhhCCCCC-CCCChHHHhhhcchhHHHHHHhhhHHHHHHHHhcCCCCCCcchhcccccccccchhh
Q 012758 62 EELYNDLREFLSTVGLSES-HVPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSSTKPGFNGFVAEKSLAGQDEKVA 137 (457)
Q Consensus 62 ~el~~~~~ef~~~~~l~~~-~~psmkels~hgr~dlanivrrrgyk~i~~l~~~s~~~~~~~~~~e~~~~~~~~~~~ 137 (457)
+.+++-|++=+.+=-|++| .|||+.||..+=.+-..- | .|+|+-+.+.===-+.-+..-||+|...+.-+....
T Consensus 14 ~QI~~qIk~~I~~g~l~pGdkLPSvRelA~~~~VNpnT-v-~raY~eLE~eG~i~t~rg~G~fV~~~~~~~~~~~~~ 88 (125)
T COG1725 14 EQIANQIKEQIASGELKPGDKLPSVRELAKDLGVNPNT-V-QRAYQELEREGIVETKRGKGTFVTEDAKEILDQLKR 88 (125)
T ss_pred HHHHHHHHHHHHhCCcCCCCCCCcHHHHHHHhCCCHHH-H-HHHHHHHHHCCCEEEecCeeEEEcCCchhhHHHHHH
Confidence 4577888887777777777 699999998877666544 3 467876554322223556666888775544433333
No 67
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=38.28 E-value=28 Score=28.75 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=28.9
Q ss_pred CCCCCCCChHHHhhhcchhHHHHHHhhhHHHHHHH
Q 012758 77 LSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQL 111 (457)
Q Consensus 77 l~~~~~psmkels~hgr~dlanivrrrgyk~i~~l 111 (457)
+|..|++++.||.+..+.+|+.+++ .+.+.+++.
T Consensus 42 iPk~h~~~~~~l~~~~~~~l~~~~~-~~~~~l~~~ 75 (104)
T cd01278 42 IPKEHIASLKALTKEDVPLLEHMET-VGREKLLRS 75 (104)
T ss_pred EecCCCCChHHCCHhHHHHHHHHHH-HHHHHHHHH
Confidence 5888999999999999999999988 677755554
No 68
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=35.78 E-value=43 Score=37.17 Aligned_cols=33 Identities=18% Similarity=0.347 Sum_probs=25.2
Q ss_pred CCCcEEEEEEcCCe-eEEEEEEEC---CEeeeCCCCC
Q 012758 410 KSRLWSTVLWLYPG-TYEIKFIVD---GQWKVDPQRE 442 (457)
Q Consensus 410 k~GvWstTL~LPPG-rYEYKFIVD---GeWt~DPdnP 442 (457)
.+|.+-+.++++|| .|.|+|.|+ |.+.+-++.-
T Consensus 96 ~DG~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~ 132 (563)
T KOG1263|consen 96 QDGVYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVS 132 (563)
T ss_pred ccCCccccCCcCCCCeEEEEEEeCCcceeEEEeeccc
Confidence 45688899999999 899999999 4444444433
No 69
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=34.25 E-value=5.3 Score=34.76 Aligned_cols=23 Identities=39% Similarity=0.680 Sum_probs=18.4
Q ss_pred hHHHhhhcchhHHHHHHhhhHHH
Q 012758 85 MKELSAHGRDDLANIVRRRGYKF 107 (457)
Q Consensus 85 mkels~hgr~dlanivrrrgyk~ 107 (457)
+|.|..+|+.++...||+.||+|
T Consensus 203 ~~Kl~~~~~~~~i~~~~~~Gy~~ 225 (226)
T TIGR02154 203 RKALNPFGLEDPVQTVRGAGYRF 225 (226)
T ss_pred HHhhccCCCCCcEEEecccceEe
Confidence 35677788888888899999976
No 70
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4.2.99.18 from EC) is a DNA repair enzyme which removes a number of damaged pyrimidines from DNA via its glycosylase activity and also cleaves the phosphodiester backbone at apurinic / apyrimidinic sites via a beta-elimination mechanism [, ]. The structurally related DNA glycosylase MutY recognises and excises the mutational intermediate 8-oxoguanine-adenine mispair []. The 3-D structures of Escherichia coli endonuclease III [] and catalytic domain of MutY [] have been determined. The structures contain two all-alpha domains: a sequence-continuous, six-helix domain (residues 22-132) and a Greek-key, four-helix domain formed by one N-terminal and three C-terminal helices (residues 1-21 and 133-211) together with the [Fe4S4] cluster. The cluster is bound entirely within the C-terminal loop by four cysteine residues with a ligation pattern Cys-(Xaa)6-Cys-(Xaa)2-Cys-(Xaa)5-Cys which is distinct from all other known Fe4S4 proteins. This structural motif is referred to as a [Fe4S4] cluster loop (FCL) []. Two DNA-binding motifs have been proposed, one at either end of the interdomain groove: the helix-hairpin-helix (HhH) and FCL motifs (see IPR003651 from INTERPRO). The primary role of the iron-sulphur cluster appears to involve positioning conserved basic residues for interaction with the DNA phosphate backbone by forming the loop of the FCL motif [, ]. The HhH-GPD domain gets its name from its hallmark helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This domain is found in a diverse range of structurally related DNA repair proteins that include: endonuclease III, 4.2.99.18 from EC and DNA glycosylase MutY, an A/G-specific adenine glycosylase. Both of these enzymes have a C-terminal iron-sulphur cluster loop (FCL). The methyl-CPG binding protein (MBD4) also contain a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II 3.2.2.21 from EC, 8-oxoguanine DNA glycosylases and other members of the AlkA family.; GO: 0006284 base-excision repair; PDB: 3F0Z_A 3I0X_A 3F10_A 3I0W_A 3S6I_D 3N5N_Y 1PU7_A 1PU8_B 1PU6_B 1NGN_A ....
Probab=33.89 E-value=40 Score=27.82 Aligned_cols=36 Identities=19% Similarity=0.498 Sum_probs=31.6
Q ss_pred HHHHHHHHhhCCCCCCCCChHHHhhhcchhHHHHHHhhhHH
Q 012758 66 NDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYK 106 (457)
Q Consensus 66 ~~~~ef~~~~~l~~~~~psmkels~hgr~dlanivrrrgyk 106 (457)
.=++.|...+| .|+.+.|.+-+-.||..++|+.||.
T Consensus 16 ~~~~~l~~~~g-----~pt~~~l~~~~~~el~~~i~~~G~~ 51 (108)
T PF00730_consen 16 KIYRRLFERYG-----FPTPEALAEASEEELRELIRPLGFS 51 (108)
T ss_dssp HHHHHHHHHHS-----CSSHHHHHCSHHHHHHHHHTTSTSH
T ss_pred HHHHHHHHHhc-----CCCHHHHHhCCHHHHHHHhhccCCC
Confidence 34567788888 8999999999999999999999986
No 71
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=33.11 E-value=90 Score=26.03 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=10.2
Q ss_pred CcEEEEE-EcCCeeEEEE
Q 012758 412 RLWSTVL-WLYPGTYEIK 428 (457)
Q Consensus 412 GvWstTL-~LPPGrYEYK 428 (457)
..++.++ ++.||+|+|-
T Consensus 74 ~~~~~~f~~~~~G~y~~~ 91 (104)
T PF13473_consen 74 ETATVTFTPLKPGEYEFY 91 (104)
T ss_dssp -EEEEEEEE-S-EEEEEB
T ss_pred CEEEEEEcCCCCEEEEEE
Confidence 4566665 8999998873
No 72
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=31.99 E-value=15 Score=30.98 Aligned_cols=12 Identities=67% Similarity=1.716 Sum_probs=0.0
Q ss_pred ccccCCCCCceeeEEEee
Q 012758 19 LWQWHPPRKHLSFTICCA 36 (457)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~ 36 (457)
+||||| |||.++
T Consensus 47 ~~q~HP------FTIas~ 58 (105)
T PF08022_consen 47 FWQWHP------FTIASS 58 (105)
T ss_dssp ------------------
T ss_pred cccccc------cEeecc
Confidence 799998 777544
No 73
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=31.11 E-value=76 Score=23.20 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhhCCCCCC-CCChHHHhhhcch
Q 012758 62 EELYNDLREFLSTVGLSESH-VPSMKELSAHGRD 94 (457)
Q Consensus 62 ~el~~~~~ef~~~~~l~~~~-~psmkels~hgr~ 94 (457)
.+++.+|+.++....++.|. +|+.++|+.|=..
T Consensus 4 ~~~~~~i~~~i~~~~~~~~~~~~~~~~la~~~~i 37 (66)
T cd07377 4 EQIADQLREAILSGELKPGDRLPSERELAEELGV 37 (66)
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHCC
Confidence 57899999999888876665 6778888876443
No 74
>COG0014 ProA Gamma-glutamyl phosphate reductase [Amino acid transport and metabolism]
Probab=30.18 E-value=24 Score=38.00 Aligned_cols=63 Identities=29% Similarity=0.452 Sum_probs=48.6
Q ss_pred ccccccHHHHHHHHHHHHhhCCCCCCCCCh--------HH-HhhhcchhHHHHHHhhhHHHHHHHHhcCCCCCC
Q 012758 56 RKVKSNEELYNDLREFLSTVGLSESHVPSM--------KE-LSAHGRDDLANIVRRRGYKFIRQLLKSSTKPGF 120 (457)
Q Consensus 56 ~~v~~~~el~~~~~ef~~~~~l~~~~~psm--------ke-ls~hgr~dlanivrrrgyk~i~~l~~~s~~~~~ 120 (457)
--+.||..|++-|++=|..+|||++.|.=+ .| |..-|-.|| |+-|=|..||+....+++-|-.
T Consensus 150 ea~~Sn~ai~~~i~~aL~~~~lP~~aVqli~~~~R~~v~~ll~l~~yiD~--iIPRGg~~Li~~v~~~a~vPVi 221 (417)
T COG0014 150 EAIHSNAAIVEVIQEALEKAGLPADAVQLIEDTDREEVLELLRLDGYIDL--VIPRGGAGLIRRVVENATVPVI 221 (417)
T ss_pred HHhhhHHHHHHHHHHHHHHcCCCHHHhhhccCCCHHHHHHHHhhcCceeE--EEcCCcHHHHHHHHhCCcCCEE
Confidence 357899999999999999999999876432 22 445555665 5667788999999999986543
No 75
>KOG0045 consensus Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily) [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.84 E-value=49 Score=37.10 Aligned_cols=27 Identities=22% Similarity=0.652 Sum_probs=22.9
Q ss_pred cCCeeEEEEEEECCEee---eCCCCCeecc
Q 012758 420 LYPGTYEIKFIVDGQWK---VDPQRESVTK 446 (457)
Q Consensus 420 LPPGrYEYKFIVDGeWt---~DPdnPtVtD 446 (457)
-+.|.|++||-++|+|+ +|...|+..+
T Consensus 114 ~yaGif~f~~w~~G~W~~VvIDD~LP~~~~ 143 (612)
T KOG0045|consen 114 NYAGIFHFRFWQNGEWVEVVIDDRLPTSNG 143 (612)
T ss_pred ccceEEEEEEEeCCeEEEEEeeeecceEcC
Confidence 45699999999999995 4889998775
No 76
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=28.30 E-value=55 Score=24.64 Aligned_cols=25 Identities=32% Similarity=0.643 Sum_probs=14.8
Q ss_pred EEE-EEcCCeeEEEEEEE---CCEeeeCC
Q 012758 415 STV-LWLYPGTYEIKFIV---DGQWKVDP 439 (457)
Q Consensus 415 stT-L~LPPGrYEYKFIV---DGeWt~DP 439 (457)
.++ ..||||.|.++-.+ +|.|..++
T Consensus 30 ~~~~~~L~~G~Y~l~V~a~~~~~~~~~~~ 58 (66)
T PF07495_consen 30 SISYTNLPPGKYTLEVRAKDNNGKWSSDE 58 (66)
T ss_dssp EEEEES--SEEEEEEEEEEETTS-B-SS-
T ss_pred EEEEEeCCCEEEEEEEEEECCCCCcCccc
Confidence 444 48999999988776 57887765
No 77
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=27.46 E-value=58 Score=31.33 Aligned_cols=32 Identities=28% Similarity=0.676 Sum_probs=19.0
Q ss_pred CCCccccccCCCCCCCccccccccCCCcEEEEEEcC-CeeEEEEEE
Q 012758 386 NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLY-PGTYEIKFI 430 (457)
Q Consensus 386 NNW~~~IpMeKd~ss~~~~~~gdkk~GvWstTL~LP-PGrYEYKFI 430 (457)
..|+ .+||... .+..|..++.+. +|.|+|+..
T Consensus 55 ~~w~-~vpM~~~------------gnDrW~a~f~~~~~G~~~f~Ve 87 (187)
T PF11896_consen 55 REWQ-EVPMTPL------------GNDRWEASFTPDRPGRYEFRVE 87 (187)
T ss_dssp -B-----B-EES------------TS-EEEEEEE--SSEEEEEEEE
T ss_pred Ccce-eeccccC------------CCCEEEEEEECCCceeEEEEEE
Confidence 4686 4899863 678999998765 899999876
No 78
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=26.68 E-value=24 Score=27.89 Aligned_cols=39 Identities=28% Similarity=0.477 Sum_probs=28.2
Q ss_pred ccccccHHHHHHHHHHHHhhCCCCCCCCChHHHhhhcchhHHHHHHhhhHHHHHHHHh
Q 012758 56 RKVKSNEELYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQLLK 113 (457)
Q Consensus 56 ~~v~~~~el~~~~~ef~~~~~l~~~~~psmkels~hgr~dlanivrrrgyk~i~~l~~ 113 (457)
.+|++|++|...|+.... -.++..|.|..||.|-.+=|.
T Consensus 9 ~~~~~d~~L~~~l~~~~~-------------------~e~~~~lA~~~Gf~ft~~el~ 47 (64)
T TIGR03798 9 EKVKTDPDLREKLKAAED-------------------PEDRVAIAKEAGFEFTGEDLK 47 (64)
T ss_pred HHHHcCHHHHHHHHHcCC-------------------HHHHHHHHHHcCCCCCHHHHH
Confidence 467888888888776321 346778889999999665443
No 79
>PRK10301 hypothetical protein; Provisional
Probab=26.32 E-value=1.9e+02 Score=25.91 Aligned_cols=80 Identities=20% Similarity=0.242 Sum_probs=41.1
Q ss_pred HHHhHhhcchhHHHHHHHhcCC-CceEEEEEEecC----CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEE
Q 012758 342 NKAEKLISDKDEELIAAEESLS-GLEVVEIQYSGD----GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWST 416 (457)
Q Consensus 342 ~~Aq~Li~eKd~eLdaAE~aLs-gLv~VTFrW~g~----AksV~VaGSFNNW~~~IpMeKd~ss~~~~~~gdkk~GvWst 416 (457)
.-||.-+++-.+.-.+ .+. .-..|++++..+ ...|.|.+.- +. .++..+.. ........+.+
T Consensus 24 A~AHa~l~~s~Pa~ga---~v~~~P~~V~L~F~e~v~~~~s~i~v~~~~-g~--~v~~~~~~-------~~~~~~~~~~v 90 (124)
T PRK10301 24 VWAHAHLTHQYPAANA---QVTAAPQALTLNFSEGIEPGFSGATITGPK-QE--NIKTLPAK-------RNEQDQKQLIV 90 (124)
T ss_pred hhhcccccccCCCCCC---ccccCCCEEEEEcCCCccccccEEEEEcCC-CC--EeccCCcc-------ccCCCCcEEEE
Confidence 3466666654443222 121 234566666554 3567777542 21 12211100 00012345666
Q ss_pred EE--EcCCeeEEEEEEE---CCE
Q 012758 417 VL--WLYPGTYEIKFIV---DGQ 434 (457)
Q Consensus 417 TL--~LPPGrYEYKFIV---DGe 434 (457)
.+ .|+||.|...|.| ||+
T Consensus 91 ~l~~~L~~G~YtV~Wrvvs~DGH 113 (124)
T PRK10301 91 PLADSLKPGTYTVDWHVVSVDGH 113 (124)
T ss_pred ECCCCCCCccEEEEEEEEecCCC
Confidence 65 3889999999998 775
No 80
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=25.60 E-value=2.2e+02 Score=25.38 Aligned_cols=16 Identities=25% Similarity=0.329 Sum_probs=11.1
Q ss_pred eEEEEEEecCCceEEE
Q 012758 366 EVVEIQYSGDGEIVEV 381 (457)
Q Consensus 366 v~VTFrW~g~AksV~V 381 (457)
-+|+|.|...+..|..
T Consensus 23 dTV~f~n~d~~Hnv~~ 38 (116)
T TIGR02375 23 DTVTFVPTDKGHNVET 38 (116)
T ss_pred CEEEEEECCCCeeEEE
Confidence 3788888776666554
No 81
>PF03801 Ndc80_HEC: HEC/Ndc80p family; InterPro: IPR005550 Members of this family are components of the mitotic spindle. It has been shown that Ndc80 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle.; PDB: 3IZ0_E 2VE7_B 2IGP_A.
Probab=24.57 E-value=60 Score=30.07 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=16.1
Q ss_pred CCcccccccccHHHHHHHHHHHHhhCC
Q 012758 51 SSRSSRKVKSNEELYNDLREFLSTVGL 77 (457)
Q Consensus 51 ~~r~~~~v~~~~el~~~~~ef~~~~~l 77 (457)
.+|.-+-..--.+.+.+|-+||++-|-
T Consensus 28 d~Rpl~Dk~~q~~~~~~I~~fL~~~~~ 54 (157)
T PF03801_consen 28 DPRPLSDKSYQQECIRKIYEFLSEHGF 54 (157)
T ss_dssp --S-TT-HHHHHHHHHHHHHHHHHTT-
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 344333333345778999999999998
No 82
>TIGR02325 C_P_lyase_phnF phosphonates metabolism transcriptional regulator PhnF. All members of the seed alignment for this family are predicted helix-turn-helix transcriptional regulatory proteins of the broader gntR and are found associated with genes for the import and degradation of phosphonates and/or related compounds (e.g. phosphonites) with a direct C-P bond.
Probab=24.30 E-value=90 Score=29.11 Aligned_cols=32 Identities=9% Similarity=0.174 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHHHhhCCCCCC-CCChHHHhhhc
Q 012758 61 NEELYNDLREFLSTVGLSESH-VPSMKELSAHG 92 (457)
Q Consensus 61 ~~el~~~~~ef~~~~~l~~~~-~psmkels~hg 92 (457)
-+.+.++|++-+.+=.+|.|. +||..||.++=
T Consensus 10 y~~i~~~l~~~I~~g~~~~G~~LPsE~eLa~~~ 42 (238)
T TIGR02325 10 WRQIADKIEQEIAAGHLRAGDYLPAEMQLAERF 42 (238)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHH
Confidence 478889999999988888776 99999999863
No 83
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=24.29 E-value=1.1e+02 Score=26.09 Aligned_cols=33 Identities=15% Similarity=0.137 Sum_probs=24.5
Q ss_pred CCCcEEEEEEcCCeeEEEEEEECCEeeeCCCCCe
Q 012758 410 KSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRES 443 (457)
Q Consensus 410 k~GvWstTL~LPPGrYEYKFIVDGeWt~DPdnPt 443 (457)
..|.=++.+.|+||+|....+. |.+..-|..|.
T Consensus 49 ~~Gqte~~I~L~PG~htLtl~~-~d~~h~~~~~~ 81 (87)
T PF14347_consen 49 GKGQTELNIELPPGKHTLTLQL-GDGDHVPHDPP 81 (87)
T ss_pred CCCEEEEEEEeCCCCEEEEEEe-CCCCcccCCCc
Confidence 4566667899999999999887 44556665554
No 84
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=24.17 E-value=53 Score=24.40 Aligned_cols=17 Identities=24% Similarity=0.690 Sum_probs=13.6
Q ss_pred cchhHHHHHHhhhHHHH
Q 012758 92 GRDDLANIVRRRGYKFI 108 (457)
Q Consensus 92 gr~dlanivrrrgyk~i 108 (457)
-..++..|.|..||.|=
T Consensus 28 ~~~e~~~lA~~~Gy~ft 44 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFT 44 (49)
T ss_pred CHHHHHHHHHHcCCCCC
Confidence 34577889999999985
No 85
>TIGR02404 trehalos_R_Bsub trehalose operon repressor, B. subtilis-type. This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from E. coli.
Probab=23.84 E-value=93 Score=29.21 Aligned_cols=60 Identities=22% Similarity=0.296 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhhCCCCCC-CCChHHHhhhcchhHHHHHHhhhHHHHHHHHhcCC---CCCCcchhcc
Q 012758 62 EELYNDLREFLSTVGLSESH-VPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSST---KPGFNGFVAE 126 (457)
Q Consensus 62 ~el~~~~~ef~~~~~l~~~~-~psmkels~hgr~dlanivrrrgyk~i~~l~~~s~---~~~~~~~~~e 126 (457)
.++.++|++-+.+=.++.|. +||..||.++=-+ ..+.=|+ -|++|....- ..|.+-||.+
T Consensus 3 ~qi~~~l~~~I~~g~~~~G~~LPsE~eLa~~~gV--SR~TVR~---Al~~L~~eGli~r~~G~GTfV~~ 66 (233)
T TIGR02404 3 EQIYQDLEQKITHGQYKEGDYLPSEHELMDQYGA--SRETVRK---ALNLLTEAGYIQKIQGKGSIVLN 66 (233)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCC--CHHHHHH---HHHHHHHCCCEEEeCCceEEEec
Confidence 46889999999998888886 9999999986322 2222222 3555555433 4555556643
No 86
>PHA00451 protein kinase
Probab=22.84 E-value=4.6e+02 Score=27.88 Aligned_cols=94 Identities=17% Similarity=0.064 Sum_probs=60.8
Q ss_pred CCCCCCCCCCcccchHHHHHHhhhhcCCcccccc----c------------------ccccCCCccccccccCcccccCC
Q 012758 214 GEVSPNLNGHYEKADMEEKVANFIQNGDLDIIED----R------------------AMILNGSALTSKQIASFATVNHP 271 (457)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~k~~~fiq~g~ld~~~d----~------------------~~~~n~~~~~~~~~~~~~~~~~~ 271 (457)
+...+|.+..+..----.-.|.+|+.+.-|+-|- . -.+-.|++.+++.=+|-.|-.-+
T Consensus 136 D~L~~C~r~~nd~h~~ya~~a~~~~e~~~d~~~~~~~~~~FIETCk~IRkFF~GIASFDmHSGNiMf~~~g~p~ITDPVS 215 (362)
T PHA00451 136 DYLNPCYRESNDVHHHYAAAAYIIIECCSDAAEEYPGSQEFIETCKMIRKFFYGIASFDMHSGNIMFDQDGVPYITDPVS 215 (362)
T ss_pred hhccccccccchHHHHHHHHHHHHHhccCCHHhccCCchhHHHHHHHHHHHHhhhhcccccCCceeeCCCCCeEecCCcc
Confidence 4444566555433222334566777766665431 1 35677999999988888876666
Q ss_pred CCCCCCCCCCcccCCCchhHHHhhhhchhhhhhhhh
Q 012758 272 LSEDHLGTGVEGADFDSSEVEARRRENQLEIDHLKF 307 (457)
Q Consensus 272 ~~~~~~~~~~~~~d~d~~~~~~~~~~~~~Ei~~Lk~ 307 (457)
.+-|+..++.+..|.|-+-+|.-...+|-.|++-|.
T Consensus 216 FS~dr~re~GF~ldPd~LiaEvEaia~~~~IeRck~ 251 (362)
T PHA00451 216 FSHDREREPGFPLDPDELIAEVEAIANQRMIERCKN 251 (362)
T ss_pred ccCccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 666677777788899877666666666666666554
No 87
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=22.78 E-value=59 Score=26.81 Aligned_cols=16 Identities=38% Similarity=0.825 Sum_probs=13.4
Q ss_pred cHHHHHHHHHHHHhhC
Q 012758 61 NEELYNDLREFLSTVG 76 (457)
Q Consensus 61 ~~el~~~~~ef~~~~~ 76 (457)
.+++..+||+|+|..|
T Consensus 4 re~i~~~iR~~fs~lG 19 (62)
T PF15513_consen 4 REEITAEIRQFFSQLG 19 (62)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 4778889999999877
No 88
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=21.28 E-value=1.3e+02 Score=23.26 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=18.5
Q ss_pred cCCCcEEEEEEcCCeeEEEEEEECCE
Q 012758 409 RKSRLWSTVLWLYPGTYEIKFIVDGQ 434 (457)
Q Consensus 409 kk~GvWstTL~LPPGrYEYKFIVDGe 434 (457)
..+|.|.+. .|+||.|..++.-.|-
T Consensus 35 d~~G~f~~~-~l~~g~Y~l~v~~~g~ 59 (82)
T PF13620_consen 35 DSDGRFSFE-GLPPGTYTLRVSAPGY 59 (82)
T ss_dssp -TTSEEEEE-EE-SEEEEEEEEBTTE
T ss_pred CCCceEEEE-ccCCEeEEEEEEECCc
Confidence 478888876 4677999999887875
No 89
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
Probab=21.07 E-value=79 Score=25.90 Aligned_cols=43 Identities=14% Similarity=0.319 Sum_probs=32.7
Q ss_pred CCCCCCCChHHHhhhcchhHHHHHHhhhHHHHHHHHhcCCCCCCcc
Q 012758 77 LSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSSTKPGFNG 122 (457)
Q Consensus 77 l~~~~~psmkels~hgr~dlanivrrrgyk~i~~l~~~s~~~~~~~ 122 (457)
+|.-|++++.+|++--+.+|+.+.+.- -++.+.+- ....++|=
T Consensus 40 iPk~H~~~~~dl~~~~~~~l~~~~~~~-~~~~~~~~--~~~~~~n~ 82 (104)
T cd01276 40 IPKKHIASLSDATEEDEELLGHLLSAA-AKVAKDLG--IAEDGYRL 82 (104)
T ss_pred EecceeCChHHcccccHHHHHHHHHHH-HHHHHHhC--CCCCCEEE
Confidence 688899999999999999999998876 56666652 12455553
No 90
>PF04985 Phage_tube: Phage tail tube protein FII; InterPro: IPR006498 This entry is represented by Bacteriophage P2, FII, the major tail tube protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The tails of some phage are contractile. These sequences represent the tail tube, or tail core, protein of the contractile tail of phage P2, and homologous proteins from other phage.
Probab=21.02 E-value=3.8e+02 Score=24.43 Aligned_cols=52 Identities=13% Similarity=0.150 Sum_probs=33.0
Q ss_pred ceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEECCE--eeeCCCCCeec
Q 012758 377 EIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQ--WKVDPQRESVT 445 (457)
Q Consensus 377 ksV~VaGSFNNW~~~IpMeKd~ss~~~~~~gdkk~GvWstTL~LPPGrYEYKFIVDGe--Wt~DPdnPtVt 445 (457)
-.+.+.|.+..|+. -.++. .+...++.++ -.+.||+.|||+ +-+|..+....
T Consensus 98 ~~~~~~G~~~~~~~-g~~k~------------g~~~~~~~~~----~v~yyk~~idG~~~~eiD~~n~i~~ 151 (167)
T PF04985_consen 98 VVAVIRGRIKSVDP-GEWKP------------GEKTETSIEF----SVTYYKLEIDGKEIIEIDKLNNIYR 151 (167)
T ss_pred EEEEEEEEEEeeCC-cccCc------------CccccceEEE----EEEEEEEEECCEEEEEEECccCEEE
Confidence 45677788877754 22322 1223333443 267999999997 77888888655
No 91
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=21.01 E-value=2.1e+02 Score=24.57 Aligned_cols=44 Identities=25% Similarity=0.376 Sum_probs=26.3
Q ss_pred hhHHHHHhHHHHHHHHHhHHHHHHHHH-------HHHhhHHHhHhhcchhH
Q 012758 310 HQKEMELSRLKEQIEKEKLALSVLQTK-------AVTEINKAEKLISDKDE 353 (457)
Q Consensus 310 ~QkElE~~rak~~ve~~K~~Lsvlq~k-------~~~ei~~Aq~Li~eKd~ 353 (457)
.+-+-|..|+..++++.+..|-.|..+ ...+|.+||.++.+-..
T Consensus 31 ~~~~~E~~rl~~Al~~~~~eL~~l~~~~~~~~~~~~a~If~ah~~~L~D~~ 81 (123)
T PF05524_consen 31 DDIEAEIERLEQALEKAREELEQLAERAESKLGEEEAAIFEAHLMMLEDPE 81 (123)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHSSCTHHHHHHHHHHT-HH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcCHh
Confidence 334445555556666666666555554 34478899988876443
No 92
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=20.45 E-value=2.2e+02 Score=23.04 Aligned_cols=16 Identities=25% Similarity=0.437 Sum_probs=9.3
Q ss_pred CcEEEEEEcCCeeEEEE
Q 012758 412 RLWSTVLWLYPGTYEIK 428 (457)
Q Consensus 412 GvWstTL~LPPGrYEYK 428 (457)
..|+.++. .||.|.|.
T Consensus 54 ~~~~~tf~-~~G~y~y~ 69 (83)
T TIGR02657 54 QAYSLTFT-EAGTYDYH 69 (83)
T ss_pred CEEEEECC-CCEEEEEE
Confidence 35555553 47777664
No 93
>PF06252 DUF1018: Protein of unknown function (DUF1018); InterPro: IPR009363 This family consists of several bacterial and phage proteins, related to Gp16 of phage Mu, of unknown function.
Probab=20.17 E-value=63 Score=28.16 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=28.2
Q ss_pred HHHHHHhhCCCCCCCCChHHHhhhcchhHHHHHHhhhHH
Q 012758 68 LREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYK 106 (457)
Q Consensus 68 ~~ef~~~~~l~~~~~psmkels~hgr~dlanivrrrgyk 106 (457)
-|.+|.. ..-+-|+|+|+..++..+....+++|+|
T Consensus 6 YR~~L~~----~~Gk~S~k~lt~~el~~vl~~l~~~G~k 40 (119)
T PF06252_consen 6 YRALLQR----VTGKSSSKDLTEAELEKVLDELKRLGFK 40 (119)
T ss_pred HHHHHHH----HhChhhHHHCCHHHHHHHHHHHHHccCc
Confidence 3555655 2346799999999999999999999995
Done!