Query 012759
Match_columns 457
No_of_seqs 480 out of 2992
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 06:00:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012759.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012759hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01802 AN1_N ubiquitin-like d 99.8 1.5E-20 3.3E-25 151.0 11.6 96 361-456 8-103 (103)
2 cd01802 AN1_N ubiquitin-like d 99.8 2E-20 4.3E-25 150.3 9.8 99 54-152 5-103 (103)
3 KOG0003 Ubiquitin/60s ribosoma 99.8 8.5E-22 1.8E-26 150.7 0.9 76 1-76 1-76 (128)
4 cd01793 Fubi Fubi ubiquitin-li 99.8 1.8E-19 4E-24 136.9 8.8 74 381-456 1-74 (74)
5 KOG0004 Ubiquitin/40S ribosoma 99.8 1.2E-19 2.6E-24 150.4 4.4 76 1-76 1-76 (156)
6 PTZ00044 ubiquitin; Provisiona 99.8 1.5E-18 3.2E-23 132.9 8.9 76 381-456 1-76 (76)
7 cd01807 GDX_N ubiquitin-like d 99.8 1E-18 2.2E-23 132.8 7.5 73 1-73 1-73 (74)
8 cd01793 Fubi Fubi ubiquitin-li 99.8 1.3E-18 2.8E-23 132.2 7.8 74 1-76 1-74 (74)
9 cd01810 ISG15_repeat2 ISG15 ub 99.8 2.3E-18 4.9E-23 130.9 8.8 74 383-456 1-74 (74)
10 PTZ00044 ubiquitin; Provisiona 99.7 4.6E-18 9.9E-23 130.2 8.0 75 1-75 1-75 (76)
11 cd01797 NIRF_N amino-terminal 99.7 4.9E-18 1.1E-22 129.6 7.4 74 1-74 1-76 (78)
12 cd01803 Ubiquitin Ubiquitin. U 99.7 8.7E-18 1.9E-22 128.7 8.9 76 381-456 1-76 (76)
13 cd01807 GDX_N ubiquitin-like d 99.7 8.3E-18 1.8E-22 127.8 8.4 73 381-453 1-73 (74)
14 cd01806 Nedd8 Nebb8-like ubiq 99.7 2E-17 4.3E-22 126.7 9.3 76 381-456 1-76 (76)
15 cd01810 ISG15_repeat2 ISG15 ub 99.7 2.1E-17 4.6E-22 125.5 7.2 73 3-75 1-73 (74)
16 cd01804 midnolin_N Ubiquitin-l 99.7 4.7E-17 1E-21 124.6 8.8 77 380-457 1-77 (78)
17 cd01797 NIRF_N amino-terminal 99.7 7.8E-17 1.7E-21 123.0 8.2 74 381-454 1-76 (78)
18 cd01806 Nedd8 Nebb8-like ubiq 99.7 1.8E-16 3.8E-21 121.4 8.2 75 1-75 1-75 (76)
19 cd01798 parkin_N amino-termina 99.7 1.7E-16 3.6E-21 119.3 7.9 70 383-452 1-70 (70)
20 cd01803 Ubiquitin Ubiquitin. U 99.7 1.8E-16 3.9E-21 121.4 8.0 76 1-76 1-76 (76)
21 KOG0005 Ubiquitin-like protein 99.7 5.3E-17 1.1E-21 110.6 4.1 70 1-70 1-70 (70)
22 KOG0003 Ubiquitin/60s ribosoma 99.7 8E-18 1.7E-22 129.0 -0.0 76 381-456 1-76 (128)
23 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 3.5E-16 7.6E-21 117.5 8.3 72 380-451 1-72 (73)
24 cd01798 parkin_N amino-termina 99.7 1.6E-16 3.4E-21 119.4 6.4 70 3-72 1-70 (70)
25 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 2.2E-16 4.7E-21 118.7 6.7 70 1-70 2-71 (73)
26 KOG0004 Ubiquitin/40S ribosoma 99.6 9.7E-17 2.1E-21 133.2 4.6 77 381-457 1-77 (156)
27 cd01763 Sumo Small ubiquitin-r 99.6 1.1E-15 2.4E-20 119.7 10.1 79 378-456 9-87 (87)
28 cd01804 midnolin_N Ubiquitin-l 99.6 5.5E-16 1.2E-20 118.7 7.8 77 76-153 1-77 (78)
29 cd01794 DC_UbP_C dendritic cel 99.6 6.6E-16 1.4E-20 115.3 7.8 68 384-451 2-69 (70)
30 cd01794 DC_UbP_C dendritic cel 99.6 4.1E-16 8.8E-21 116.4 6.6 67 5-71 3-69 (70)
31 cd01805 RAD23_N Ubiquitin-like 99.6 1.3E-15 2.7E-20 116.9 8.9 73 381-453 1-75 (77)
32 KOG0005 Ubiquitin-like protein 99.6 2.2E-16 4.7E-21 107.6 3.5 70 77-146 1-70 (70)
33 cd01800 SF3a120_C Ubiquitin-li 99.6 1.1E-15 2.4E-20 116.6 7.6 69 388-456 5-73 (76)
34 cd01805 RAD23_N Ubiquitin-like 99.6 1.4E-15 3E-20 116.7 8.0 73 1-73 1-75 (77)
35 cd01809 Scythe_N Ubiquitin-lik 99.6 1.3E-15 2.9E-20 115.2 7.3 72 1-72 1-72 (72)
36 cd01809 Scythe_N Ubiquitin-lik 99.6 2.3E-15 5E-20 113.9 8.3 72 381-452 1-72 (72)
37 PF00240 ubiquitin: Ubiquitin 99.6 2.7E-15 5.7E-20 112.5 7.8 69 386-454 1-69 (69)
38 cd01808 hPLIC_N Ubiquitin-like 99.6 4.2E-15 9E-20 111.9 8.0 71 381-452 1-71 (71)
39 cd01792 ISG15_repeat1 ISG15 ub 99.6 2.3E-15 5E-20 116.0 6.2 72 1-72 3-76 (80)
40 cd01792 ISG15_repeat1 ISG15 ub 99.6 3.8E-15 8.3E-20 114.8 7.4 73 380-452 2-76 (80)
41 cd01808 hPLIC_N Ubiquitin-like 99.6 3.7E-15 8.1E-20 112.2 7.1 71 1-72 1-71 (71)
42 cd01796 DDI1_N DNA damage indu 99.6 8.6E-15 1.9E-19 110.0 7.5 68 383-450 1-70 (71)
43 cd01796 DDI1_N DNA damage indu 99.5 1.2E-14 2.6E-19 109.2 6.0 68 3-70 1-70 (71)
44 PF00240 ubiquitin: Ubiquitin 99.5 2.6E-14 5.6E-19 107.1 7.1 69 6-74 1-69 (69)
45 cd01800 SF3a120_C Ubiquitin-li 99.5 2.6E-14 5.5E-19 109.0 6.5 69 8-76 5-73 (76)
46 cd01790 Herp_N Homocysteine-re 99.5 3.1E-14 6.8E-19 107.3 6.3 71 1-71 2-78 (79)
47 cd01763 Sumo Small ubiquitin-r 99.5 7.5E-14 1.6E-18 109.2 8.3 76 1-76 12-87 (87)
48 cd01790 Herp_N Homocysteine-re 99.5 7.5E-14 1.6E-18 105.3 7.4 72 380-451 1-78 (79)
49 cd01812 BAG1_N Ubiquitin-like 99.5 8.7E-14 1.9E-18 104.9 7.2 70 381-451 1-70 (71)
50 cd01813 UBP_N UBP ubiquitin pr 99.4 2.2E-13 4.9E-18 102.8 6.6 69 305-374 1-72 (74)
51 cd01812 BAG1_N Ubiquitin-like 99.4 2.3E-13 5E-18 102.6 6.6 70 77-147 1-70 (71)
52 cd01813 UBP_N UBP ubiquitin pr 99.4 5.4E-13 1.2E-17 100.8 6.8 69 77-146 1-72 (74)
53 smart00213 UBQ Ubiquitin homol 99.4 1E-12 2.2E-17 96.8 6.8 64 381-445 1-64 (64)
54 cd01799 Hoil1_N Ubiquitin-like 99.4 1.1E-12 2.4E-17 99.1 6.7 69 2-71 2-74 (75)
55 cd01799 Hoil1_N Ubiquitin-like 99.4 1.6E-12 3.5E-17 98.2 7.3 65 386-451 8-74 (75)
56 smart00213 UBQ Ubiquitin homol 99.3 3.6E-12 7.7E-17 93.8 6.4 64 1-65 1-64 (64)
57 cd01815 BMSC_UbP_N Ubiquitin-l 99.3 1.5E-12 3.3E-17 96.6 4.1 54 94-147 18-74 (75)
58 cd01815 BMSC_UbP_N Ubiquitin-l 99.3 2.5E-12 5.5E-17 95.5 5.0 55 397-451 16-74 (75)
59 cd01814 NTGP5 Ubiquitin-like N 99.3 2.6E-12 5.7E-17 101.8 4.4 73 2-74 6-92 (113)
60 TIGR00601 rad23 UV excision re 99.3 6.9E-12 1.5E-16 123.4 7.5 73 1-73 1-76 (378)
61 cd01814 NTGP5 Ubiquitin-like N 99.2 5.2E-12 1.1E-16 100.2 4.2 76 75-150 3-92 (113)
62 TIGR00601 rad23 UV excision re 99.2 1.8E-11 3.9E-16 120.5 8.5 72 381-452 1-75 (378)
63 cd01769 UBL Ubiquitin-like dom 99.2 1.1E-10 2.4E-15 87.1 7.6 67 385-451 2-68 (69)
64 PF11976 Rad60-SLD: Ubiquitin- 99.2 1.1E-10 2.3E-15 88.2 7.4 71 381-451 1-72 (72)
65 cd01795 USP48_C USP ubiquitin- 99.1 1.2E-10 2.6E-15 89.3 6.6 62 392-453 16-78 (107)
66 cd01795 USP48_C USP ubiquitin- 99.1 8.7E-11 1.9E-15 90.1 5.6 62 316-377 16-78 (107)
67 KOG0010 Ubiquitin-like protein 99.1 1.8E-10 4E-15 113.3 6.7 74 380-454 15-88 (493)
68 cd01769 UBL Ubiquitin-like dom 99.1 3.3E-10 7.2E-15 84.6 6.6 67 81-147 2-68 (69)
69 KOG0010 Ubiquitin-like protein 99.1 2.1E-10 4.5E-15 112.9 6.7 74 152-226 15-88 (493)
70 KOG0001 Ubiquitin and ubiquiti 99.0 9.8E-10 2.1E-14 82.9 8.0 73 2-74 1-73 (75)
71 KOG0011 Nucleotide excision re 99.0 4.6E-10 1E-14 104.9 6.6 73 1-73 1-75 (340)
72 PF11976 Rad60-SLD: Ubiquitin- 99.0 6.5E-10 1.4E-14 83.9 6.3 71 1-71 1-72 (72)
73 KOG0011 Nucleotide excision re 98.9 1E-09 2.2E-14 102.7 6.0 74 77-150 1-76 (340)
74 KOG0001 Ubiquitin and ubiquiti 98.9 8.4E-09 1.8E-13 77.7 9.5 74 383-456 2-75 (75)
75 cd01789 Alp11_N Ubiquitin-like 98.9 1E-08 2.2E-13 79.5 8.3 69 382-450 3-79 (84)
76 cd01788 ElonginB Ubiquitin-lik 98.8 9.2E-09 2E-13 81.2 7.0 72 382-453 2-81 (119)
77 PF14560 Ubiquitin_2: Ubiquiti 98.7 4.1E-08 9E-13 76.8 7.6 70 381-450 2-81 (87)
78 cd01789 Alp11_N Ubiquitin-like 98.7 7.6E-08 1.7E-12 74.6 8.0 70 78-147 3-80 (84)
79 cd01788 ElonginB Ubiquitin-lik 98.6 1.1E-07 2.4E-12 75.2 6.2 73 1-73 1-81 (119)
80 PLN02560 enoyl-CoA reductase 98.6 1.2E-07 2.6E-12 91.4 7.7 70 381-450 1-81 (308)
81 cd01811 OASL_repeat1 2'-5' oli 98.5 4.4E-07 9.6E-12 65.8 7.5 73 153-226 1-78 (80)
82 KOG1769 Ubiquitin-like protein 98.5 8.9E-07 1.9E-11 68.5 9.3 78 380-457 20-97 (99)
83 PF13881 Rad60-SLD_2: Ubiquiti 98.5 4.2E-07 9.1E-12 73.9 7.9 75 76-150 2-90 (111)
84 PLN02560 enoyl-CoA reductase 98.5 1.9E-07 4.1E-12 90.0 6.9 69 1-69 1-80 (308)
85 PF11543 UN_NPL4: Nuclear pore 98.5 2E-07 4.4E-12 71.2 5.2 71 379-450 3-78 (80)
86 PF13881 Rad60-SLD_2: Ubiquiti 98.5 9.6E-07 2.1E-11 71.8 9.2 73 381-453 3-89 (111)
87 PF14560 Ubiquitin_2: Ubiquiti 98.5 5.8E-07 1.3E-11 70.3 7.2 70 78-147 3-82 (87)
88 KOG4248 Ubiquitin-like protein 98.4 2.8E-07 6.1E-12 97.9 6.4 73 154-227 4-76 (1143)
89 KOG4248 Ubiquitin-like protein 98.4 4.9E-07 1.1E-11 96.1 6.8 74 382-456 4-77 (1143)
90 cd01801 Tsc13_N Ubiquitin-like 98.3 1.3E-06 2.8E-11 66.7 6.3 53 398-450 20-75 (77)
91 cd01811 OASL_repeat1 2'-5' oli 98.3 2.5E-06 5.4E-11 61.9 6.3 70 77-147 1-75 (80)
92 cd01801 Tsc13_N Ubiquitin-like 98.2 3.5E-06 7.6E-11 64.2 5.6 52 94-145 20-74 (77)
93 KOG1872 Ubiquitin-specific pro 98.2 2.8E-06 6.1E-11 83.6 6.2 70 305-375 4-74 (473)
94 cd00196 UBQ Ubiquitin-like pro 98.2 9.4E-06 2E-10 58.4 7.5 63 389-451 6-68 (69)
95 KOG3493 Ubiquitin-like protein 98.1 1.4E-06 3.1E-11 61.1 1.0 69 382-450 3-71 (73)
96 KOG0006 E3 ubiquitin-protein l 97.9 1.7E-05 3.7E-10 73.8 5.4 70 381-450 1-73 (446)
97 cd00196 UBQ Ubiquitin-like pro 97.9 4E-05 8.7E-10 54.9 6.3 65 7-71 4-68 (69)
98 COG5227 SMT3 Ubiquitin-like pr 97.9 1.8E-05 4E-10 59.5 4.1 78 380-457 24-101 (103)
99 PF11543 UN_NPL4: Nuclear pore 97.9 2.9E-05 6.3E-10 59.3 5.2 69 1-70 5-78 (80)
100 KOG0006 E3 ubiquitin-protein l 97.8 2.8E-05 6E-10 72.4 5.8 63 87-149 14-77 (446)
101 KOG4495 RNA polymerase II tran 97.7 3.3E-05 7.1E-10 58.9 3.6 51 392-442 13-65 (110)
102 PF13019 Telomere_Sde2: Telome 97.7 0.00022 4.7E-09 61.2 8.4 76 381-456 1-88 (162)
103 PF11470 TUG-UBL1: GLUT4 regul 97.5 0.00025 5.3E-09 51.6 5.9 63 235-297 3-65 (65)
104 KOG1769 Ubiquitin-like protein 97.5 0.00086 1.9E-08 52.2 8.8 76 229-304 21-96 (99)
105 KOG4495 RNA polymerase II tran 97.3 0.00036 7.7E-09 53.4 4.4 61 1-61 1-64 (110)
106 KOG3493 Ubiquitin-like protein 97.2 0.00016 3.5E-09 50.9 1.7 68 230-297 3-70 (73)
107 PF11470 TUG-UBL1: GLUT4 regul 97.2 0.0011 2.5E-08 48.2 6.1 63 387-449 3-65 (65)
108 PF08817 YukD: WXG100 protein 97.2 0.0012 2.6E-08 50.5 6.0 68 382-449 4-78 (79)
109 KOG1872 Ubiquitin-specific pro 97.0 0.0017 3.8E-08 64.4 6.7 70 381-451 4-74 (473)
110 PF00789 UBX: UBX domain; Int 96.8 0.0099 2.2E-07 45.6 8.5 72 379-450 5-81 (82)
111 PF13019 Telomere_Sde2: Telome 96.8 0.0057 1.2E-07 52.6 7.6 75 1-75 1-87 (162)
112 PF08817 YukD: WXG100 protein 96.5 0.0074 1.6E-07 46.1 6.0 68 230-297 4-78 (79)
113 KOG0013 Uncharacterized conser 96.5 0.0038 8.2E-08 55.3 4.5 62 84-145 154-215 (231)
114 PF00789 UBX: UBX domain; Int 96.3 0.036 7.9E-07 42.5 8.6 72 151-222 5-81 (82)
115 smart00166 UBX Domain present 96.3 0.029 6.3E-07 42.8 7.9 71 379-449 3-78 (80)
116 PF10302 DUF2407: DUF2407 ubiq 96.2 0.011 2.4E-07 46.8 5.4 57 79-135 3-64 (97)
117 cd01770 p47_UBX p47-like ubiqu 96.0 0.041 8.9E-07 41.9 7.7 69 379-447 3-75 (79)
118 KOG0013 Uncharacterized conser 95.9 0.013 2.8E-07 51.9 5.0 62 389-450 155-216 (231)
119 cd01767 UBX UBX (ubiquitin reg 95.9 0.067 1.5E-06 40.5 8.2 68 380-449 2-74 (77)
120 smart00166 UBX Domain present 95.8 0.049 1.1E-06 41.6 7.2 70 305-374 5-79 (80)
121 KOG1639 Steroid reductase requ 95.7 0.018 4E-07 52.4 5.1 69 381-449 1-76 (297)
122 PF10302 DUF2407: DUF2407 ubiq 95.6 0.028 6E-07 44.6 5.3 49 163-211 12-64 (97)
123 cd01774 Faf1_like2_UBX Faf1 ik 95.4 0.13 2.8E-06 39.8 8.4 71 379-450 3-83 (85)
124 cd01772 SAKS1_UBX SAKS1-like U 95.4 0.11 2.5E-06 39.5 8.1 69 381-450 5-78 (79)
125 COG5417 Uncharacterized small 95.3 0.12 2.6E-06 37.9 7.3 67 383-449 9-80 (81)
126 cd01772 SAKS1_UBX SAKS1-like U 95.3 0.097 2.1E-06 39.9 7.3 68 306-374 6-78 (79)
127 cd01767 UBX UBX (ubiquitin reg 95.0 0.14 3E-06 38.8 7.4 68 305-374 3-75 (77)
128 cd01773 Faf1_like1_UBX Faf1 ik 95.0 0.24 5.2E-06 37.8 8.5 73 379-452 4-81 (82)
129 cd01771 Faf1_UBX Faf1 UBX doma 94.7 0.26 5.7E-06 37.5 8.2 73 379-452 3-80 (80)
130 PF14533 USP7_C2: Ubiquitin-sp 94.7 0.34 7.4E-06 44.5 10.5 123 315-439 34-193 (213)
131 cd01770 p47_UBX p47-like ubiqu 94.6 0.15 3.3E-06 38.8 6.7 64 305-368 5-72 (79)
132 COG5417 Uncharacterized small 94.5 0.17 3.7E-06 37.1 6.2 70 304-373 6-80 (81)
133 PF11620 GABP-alpha: GA-bindin 94.5 0.27 5.8E-06 37.3 7.4 59 240-298 4-62 (88)
134 PF14533 USP7_C2: Ubiquitin-sp 94.2 0.38 8.3E-06 44.2 9.6 103 163-267 34-161 (213)
135 cd01774 Faf1_like2_UBX Faf1 ik 94.2 0.4 8.7E-06 37.0 8.2 69 228-297 4-82 (85)
136 cd01773 Faf1_like1_UBX Faf1 ik 94.1 0.34 7.4E-06 37.0 7.5 70 305-375 6-80 (82)
137 PRK06437 hypothetical protein; 94.0 0.5 1.1E-05 34.7 8.0 59 389-456 9-67 (67)
138 cd01771 Faf1_UBX Faf1 UBX doma 93.8 0.35 7.6E-06 36.9 7.2 69 305-374 5-78 (80)
139 COG5227 SMT3 Ubiquitin-like pr 93.6 0.28 6E-06 37.4 6.0 69 229-297 25-93 (103)
140 PF11620 GABP-alpha: GA-bindin 92.7 0.43 9.4E-06 36.2 5.9 61 392-452 4-64 (88)
141 KOG3206 Alpha-tubulin folding 92.6 0.38 8.3E-06 42.8 6.4 58 393-450 15-79 (234)
142 PF15044 CLU_N: Mitochondrial 92.5 0.22 4.8E-06 37.5 4.3 56 397-452 1-58 (76)
143 PF12436 USP7_ICP0_bdg: ICP0-b 92.4 1 2.2E-05 42.4 9.8 107 319-425 89-224 (249)
144 cd00754 MoaD Ubiquitin domain 92.1 0.67 1.4E-05 35.0 6.7 60 392-456 17-80 (80)
145 PRK08364 sulfur carrier protei 91.9 1.7 3.7E-05 32.1 8.4 66 381-456 5-70 (70)
146 PF09379 FERM_N: FERM N-termin 91.7 0.97 2.1E-05 34.1 7.2 68 385-452 1-77 (80)
147 PF12436 USP7_ICP0_bdg: ICP0-b 91.3 1.4 2.9E-05 41.7 9.2 122 153-274 69-225 (249)
148 PF15044 CLU_N: Mitochondrial 91.0 0.44 9.5E-06 35.9 4.5 57 169-225 1-59 (76)
149 KOG1639 Steroid reductase requ 90.7 0.36 7.7E-06 44.2 4.3 69 77-145 1-76 (297)
150 cd06409 PB1_MUG70 The MUG70 pr 90.3 0.86 1.9E-05 35.1 5.6 43 383-425 3-48 (86)
151 PRK06488 sulfur carrier protei 90.2 1.7 3.7E-05 31.5 7.0 60 389-456 6-65 (65)
152 PLN02799 Molybdopterin synthas 90.2 1.2 2.6E-05 33.9 6.5 61 391-456 19-82 (82)
153 cd06406 PB1_P67 A PB1 domain i 89.5 1.4 3.1E-05 33.3 6.1 37 392-428 12-48 (80)
154 PF09379 FERM_N: FERM N-termin 89.5 3 6.4E-05 31.4 8.2 65 5-69 1-72 (80)
155 PF12754 Blt1: Cell-cycle cont 89.3 0.11 2.4E-06 49.4 0.0 57 400-456 103-181 (309)
156 cd06409 PB1_MUG70 The MUG70 pr 88.2 1.4 3.1E-05 34.0 5.4 43 231-273 3-48 (86)
157 PF14453 ThiS-like: ThiS-like 88.1 2.9 6.3E-05 29.5 6.4 55 381-451 1-55 (57)
158 smart00455 RBD Raf-like Ras-bi 87.9 1.8 3.9E-05 32.0 5.7 49 384-432 3-53 (70)
159 cd01760 RBD Ubiquitin-like dom 87.9 1.4 3E-05 32.8 5.1 45 3-47 2-46 (72)
160 cd01760 RBD Ubiquitin-like dom 87.8 1.4 3.1E-05 32.7 5.1 45 383-427 2-46 (72)
161 KOG4583 Membrane-associated ER 87.6 0.27 5.8E-06 47.0 1.4 72 76-147 9-86 (391)
162 smart00455 RBD Raf-like Ras-bi 87.0 1.7 3.8E-05 32.1 5.1 45 3-47 2-46 (70)
163 PRK06944 sulfur carrier protei 86.7 5.7 0.00012 28.6 7.8 57 394-456 9-65 (65)
164 PRK05659 sulfur carrier protei 86.2 4.6 0.0001 29.2 7.1 58 394-456 9-66 (66)
165 cd06406 PB1_P67 A PB1 domain i 86.1 4.1 8.8E-05 30.9 6.7 37 88-124 12-48 (80)
166 TIGR01682 moaD molybdopterin c 85.4 5.5 0.00012 30.1 7.4 59 393-456 18-80 (80)
167 TIGR01687 moaD_arch MoaD famil 85.2 5.9 0.00013 30.5 7.7 61 392-456 17-88 (88)
168 PF14836 Ubiquitin_3: Ubiquiti 85.1 7.9 0.00017 29.9 8.0 64 392-456 15-84 (88)
169 cd00565 ThiS ThiaminS ubiquiti 84.5 4.5 9.7E-05 29.3 6.3 59 393-456 7-65 (65)
170 PRK05863 sulfur carrier protei 84.5 5.2 0.00011 29.0 6.6 57 394-456 9-65 (65)
171 PRK08053 sulfur carrier protei 84.1 8.8 0.00019 27.8 7.7 58 394-456 9-66 (66)
172 KOG3206 Alpha-tubulin folding 84.1 2.4 5.2E-05 37.9 5.4 60 317-376 15-81 (234)
173 TIGR01683 thiS thiamine biosyn 84.0 5.6 0.00012 28.7 6.6 58 394-456 7-64 (64)
174 smart00666 PB1 PB1 domain. Pho 83.5 4.2 9.1E-05 30.7 6.1 45 382-427 3-47 (81)
175 smart00295 B41 Band 4.1 homolo 83.5 8.6 0.00019 34.6 9.3 75 379-453 2-84 (207)
176 KOG4598 Putative ubiquitin-spe 83.5 1.8 3.9E-05 45.6 5.0 182 164-348 878-1105(1203)
177 PF02597 ThiS: ThiS family; I 83.3 4.6 9.9E-05 30.0 6.2 63 392-456 13-77 (77)
178 PRK07440 hypothetical protein; 83.1 9.6 0.00021 28.1 7.6 67 380-456 4-70 (70)
179 PF02196 RBD: Raf-like Ras-bin 82.1 5.2 0.00011 29.7 5.8 45 3-47 3-47 (71)
180 PRK06083 sulfur carrier protei 81.9 6.6 0.00014 30.2 6.5 67 380-456 18-84 (84)
181 cd06407 PB1_NLP A PB1 domain i 81.8 3.9 8.6E-05 31.3 5.2 42 236-277 7-49 (82)
182 PRK06437 hypothetical protein; 81.7 7.2 0.00016 28.5 6.4 55 85-148 9-63 (67)
183 cd01818 TIAM1_RBD Ubiquitin do 81.0 4.3 9.4E-05 30.2 4.9 49 232-280 3-51 (77)
184 cd06407 PB1_NLP A PB1 domain i 79.5 7.6 0.00016 29.7 6.1 64 389-452 8-81 (82)
185 PF02196 RBD: Raf-like Ras-bin 79.5 6.2 0.00013 29.2 5.5 54 383-436 3-58 (71)
186 KOG2086 Protein tyrosine phosp 78.7 4.3 9.4E-05 40.0 5.6 69 378-446 303-375 (380)
187 cd06408 PB1_NoxR The PB1 domai 78.6 8.6 0.00019 29.6 6.1 50 308-360 4-54 (86)
188 PF14836 Ubiquitin_3: Ubiquiti 78.6 8.6 0.00019 29.8 6.1 64 87-151 14-83 (88)
189 KOG0012 DNA damage inducible p 78.0 2.5 5.4E-05 41.2 3.7 63 389-451 11-75 (380)
190 KOG4583 Membrane-associated ER 77.2 1.1 2.3E-05 43.1 0.9 74 152-225 9-88 (391)
191 PF00564 PB1: PB1 domain; Int 75.9 11 0.00023 28.5 6.2 44 382-426 3-47 (84)
192 PF14453 ThiS-like: ThiS-like 75.4 6.4 0.00014 27.7 4.2 47 1-58 1-47 (57)
193 KOG4261 Talin [Cytoskeleton] 75.2 4.6 9.9E-05 43.2 4.9 101 240-343 14-123 (1003)
194 smart00295 B41 Band 4.1 homolo 74.9 19 0.00041 32.3 8.7 63 228-290 3-72 (207)
195 TIGR03028 EpsE polysaccharide 74.6 74 0.0016 29.6 14.8 139 286-450 1-160 (239)
196 cd00754 MoaD Ubiquitin domain 74.5 13 0.00028 27.8 6.3 59 164-227 17-79 (80)
197 PF10790 DUF2604: Protein of U 74.4 14 0.0003 26.5 5.6 64 237-300 4-71 (76)
198 smart00666 PB1 PB1 domain. Pho 73.9 17 0.00037 27.3 6.8 44 79-123 4-47 (81)
199 PRK07696 sulfur carrier protei 73.8 25 0.00053 25.6 7.3 61 389-456 6-67 (67)
200 KOG0012 DNA damage inducible p 73.8 4.3 9.2E-05 39.6 4.0 68 161-228 11-80 (380)
201 TIGR02958 sec_mycoba_snm4 secr 73.8 13 0.00028 38.3 7.9 71 382-453 4-81 (452)
202 COG2104 ThiS Sulfur transfer p 72.0 32 0.0007 25.2 7.5 59 393-456 10-68 (68)
203 KOG2982 Uncharacterized conser 71.6 5.8 0.00013 38.1 4.3 57 394-450 351-415 (418)
204 cd01818 TIAM1_RBD Ubiquitin do 71.4 15 0.00032 27.5 5.5 42 384-425 3-44 (77)
205 cd01777 SNX27_RA Ubiquitin dom 71.3 9.6 0.00021 29.4 4.7 39 230-268 3-41 (87)
206 cd01817 RGS12_RBD Ubiquitin do 71.2 11 0.00025 27.9 4.9 44 5-48 4-47 (73)
207 TIGR03028 EpsE polysaccharide 71.2 89 0.0019 29.1 21.3 213 210-452 1-237 (239)
208 PF10790 DUF2604: Protein of U 70.8 17 0.00038 26.0 5.5 65 312-376 3-71 (76)
209 KOG4250 TANK binding protein k 69.9 8.2 0.00018 41.2 5.4 45 7-51 321-365 (732)
210 cd01817 RGS12_RBD Ubiquitin do 69.7 15 0.00032 27.4 5.2 46 387-432 6-53 (73)
211 cd01777 SNX27_RA Ubiquitin dom 69.5 10 0.00022 29.2 4.5 39 2-40 3-41 (87)
212 cd06411 PB1_p51 The PB1 domain 69.1 9.6 0.00021 28.7 4.2 35 392-426 8-42 (78)
213 PRK08364 sulfur carrier protei 68.0 31 0.00067 25.3 6.8 52 88-148 15-66 (70)
214 cd06408 PB1_NoxR The PB1 domai 64.9 34 0.00075 26.4 6.6 46 77-124 3-48 (86)
215 PF14732 UAE_UbL: Ubiquitin/SU 64.6 18 0.0004 27.9 5.2 56 395-450 2-67 (87)
216 COG5100 NPL4 Nuclear pore prot 64.3 24 0.00052 35.0 7.0 70 381-451 1-78 (571)
217 PTZ00380 microtubule-associate 63.7 12 0.00027 30.8 4.2 48 391-438 41-88 (121)
218 PF12754 Blt1: Cell-cycle cont 63.5 2.3 5.1E-05 40.7 0.0 62 75-136 77-158 (309)
219 KOG4261 Talin [Cytoskeleton] 62.9 20 0.00043 38.6 6.5 102 314-418 12-122 (1003)
220 PLN02799 Molybdopterin synthas 62.6 18 0.00039 27.4 4.8 70 77-151 2-81 (82)
221 PF08337 Plexin_cytopl: Plexin 62.0 16 0.00034 38.3 5.6 65 162-226 201-291 (539)
222 PRK11130 moaD molybdopterin sy 61.9 50 0.0011 24.9 7.2 58 394-456 18-81 (81)
223 cd05992 PB1 The PB1 domain is 60.6 29 0.00063 25.9 5.7 43 383-426 3-46 (81)
224 KOG2086 Protein tyrosine phosp 59.9 16 0.00034 36.2 4.9 67 229-295 306-376 (380)
225 PF14847 Ras_bdg_2: Ras-bindin 59.8 25 0.00055 28.2 5.3 36 3-38 3-38 (105)
226 cd06396 PB1_NBR1 The PB1 domai 59.6 26 0.00056 26.7 5.0 37 235-273 6-44 (81)
227 cd06410 PB1_UP2 Uncharacterize 59.2 30 0.00066 27.3 5.6 40 385-425 17-56 (97)
228 PF08337 Plexin_cytopl: Plexin 57.8 16 0.00036 38.2 4.9 65 10-74 201-291 (539)
229 PRK11840 bifunctional sulfur c 56.8 46 0.001 32.5 7.5 58 394-456 9-66 (326)
230 PF14847 Ras_bdg_2: Ras-bindin 56.1 17 0.00038 29.2 3.8 36 307-342 3-38 (105)
231 KOG4598 Putative ubiquitin-spe 56.0 28 0.0006 37.2 6.1 183 88-273 878-1106(1203)
232 cd06411 PB1_p51 The PB1 domain 55.3 24 0.00052 26.6 4.2 37 240-276 8-44 (78)
233 cd05992 PB1 The PB1 domain is 55.0 34 0.00073 25.5 5.2 39 237-275 8-47 (81)
234 PF11069 DUF2870: Protein of u 54.8 9.4 0.0002 30.0 2.0 18 118-135 3-20 (98)
235 PF02597 ThiS: ThiS family; I 53.2 40 0.00086 24.8 5.3 58 240-299 13-72 (77)
236 PF14451 Ub-Mut7C: Mut7-C ubiq 53.1 65 0.0014 24.5 6.4 52 390-450 22-74 (81)
237 cd01768 RA RA (Ras-associating 53.0 98 0.0021 23.4 8.0 29 9-37 11-39 (87)
238 PF00564 PB1: PB1 domain; Int 52.7 48 0.001 24.9 5.8 40 84-123 8-48 (84)
239 cd01768 RA RA (Ras-associating 52.6 46 0.001 25.3 5.7 45 390-434 12-64 (87)
240 PRK01777 hypothetical protein; 52.4 1.1E+02 0.0023 24.2 7.6 65 380-453 3-77 (95)
241 PRK07440 hypothetical protein; 52.3 63 0.0014 23.7 6.1 62 304-375 4-65 (70)
242 PF10209 DUF2340: Uncharacteri 52.0 28 0.00061 28.6 4.4 54 396-449 21-105 (122)
243 PF00788 RA: Ras association ( 51.3 48 0.001 25.3 5.7 43 392-434 18-68 (93)
244 KOG2689 Predicted ubiquitin re 51.2 34 0.00074 32.2 5.4 70 305-374 211-285 (290)
245 PRK06488 sulfur carrier protei 50.7 52 0.0011 23.5 5.4 60 84-151 5-64 (65)
246 TIGR01682 moaD molybdopterin c 50.3 94 0.002 23.2 7.0 58 164-226 17-78 (80)
247 cd00565 ThiS ThiaminS ubiquiti 50.2 50 0.0011 23.7 5.2 60 85-151 5-64 (65)
248 KOG4250 TANK binding protein k 49.8 38 0.00082 36.4 6.1 44 83-126 321-364 (732)
249 KOG2982 Uncharacterized conser 49.4 25 0.00054 34.0 4.2 56 319-374 352-415 (418)
250 PF02017 CIDE-N: CIDE-N domain 49.2 45 0.00097 25.2 4.8 48 401-451 21-70 (78)
251 TIGR01687 moaD_arch MoaD famil 49.2 1.2E+02 0.0025 23.1 7.5 61 163-227 16-87 (88)
252 cd06396 PB1_NBR1 The PB1 domai 48.5 58 0.0013 24.8 5.4 33 311-343 6-40 (81)
253 PRK05659 sulfur carrier protei 48.5 66 0.0014 23.0 5.7 57 312-375 5-61 (66)
254 cd06410 PB1_UP2 Uncharacterize 48.4 60 0.0013 25.7 5.7 41 81-122 17-57 (97)
255 PF11069 DUF2870: Protein of u 47.3 18 0.00039 28.4 2.5 28 42-70 3-30 (98)
256 PF02991 Atg8: Autophagy prote 47.3 34 0.00073 27.5 4.2 44 395-438 37-81 (104)
257 PF00788 RA: Ras association ( 46.7 63 0.0014 24.6 5.7 31 316-346 18-48 (93)
258 smart00314 RA Ras association 46.4 67 0.0014 24.6 5.8 45 389-433 14-65 (90)
259 smart00314 RA Ras association 46.2 53 0.0012 25.1 5.2 38 2-39 6-44 (90)
260 smart00144 PI3K_rbd PI3-kinase 45.7 1.6E+02 0.0034 23.7 8.3 73 76-148 17-104 (108)
261 cd01775 CYR1_RA Ubiquitin doma 45.2 92 0.002 24.6 6.1 32 388-419 10-41 (97)
262 PRK06083 sulfur carrier protei 45.0 1.3E+02 0.0027 23.1 6.9 57 312-375 23-79 (84)
263 KOG3439 Protein conjugation fa 44.5 71 0.0015 25.8 5.4 40 163-202 45-84 (116)
264 PF10209 DUF2340: Uncharacteri 44.2 51 0.0011 27.2 4.7 56 169-224 22-108 (122)
265 cd01764 Urm1 Urm1-like ubuitin 43.6 55 0.0012 25.7 4.8 59 396-456 24-94 (94)
266 cd01611 GABARAP Ubiquitin doma 43.4 35 0.00077 27.8 3.8 58 394-452 44-106 (112)
267 PF06234 TmoB: Toluene-4-monoo 42.4 1.6E+02 0.0034 22.7 6.8 61 392-452 16-84 (85)
268 PF02505 MCR_D: Methyl-coenzym 42.3 1.7E+02 0.0038 25.1 7.8 111 12-136 5-121 (153)
269 cd01764 Urm1 Urm1-like ubuitin 41.9 34 0.00074 26.8 3.4 59 167-227 23-93 (94)
270 TIGR02958 sec_mycoba_snm4 secr 40.8 1.1E+02 0.0023 31.7 7.8 71 230-301 4-81 (452)
271 PF14732 UAE_UbL: Ubiquitin/SU 40.5 1.5E+02 0.0032 22.9 6.7 52 248-299 8-68 (87)
272 KOG3439 Protein conjugation fa 40.5 69 0.0015 25.8 4.8 40 11-50 45-84 (116)
273 COG2104 ThiS Sulfur transfer p 40.1 1.2E+02 0.0027 22.1 5.9 57 312-375 7-63 (68)
274 TIGR01683 thiS thiamine biosyn 39.8 93 0.002 22.2 5.2 61 84-151 3-63 (64)
275 cd01787 GRB7_RA RA (RAS-associ 39.6 90 0.0019 24.0 5.2 56 79-134 5-67 (85)
276 PF10787 YfmQ: Uncharacterised 39.2 77 0.0017 26.7 5.1 87 19-105 23-123 (149)
277 TIGR03027 pepcterm_export puta 38.8 2.6E+02 0.0056 24.2 12.8 140 287-451 1-162 (165)
278 cd01766 Ufm1 Urm1-like ubiquit 38.6 1.6E+02 0.0035 21.8 6.2 64 393-456 18-82 (82)
279 PTZ00380 microtubule-associate 38.3 34 0.00074 28.2 3.0 48 88-135 42-89 (121)
280 smart00144 PI3K_rbd PI3-kinase 38.3 2.1E+02 0.0045 23.0 7.9 63 238-300 28-104 (108)
281 cd01787 GRB7_RA RA (RAS-associ 38.1 1.6E+02 0.0035 22.7 6.4 66 383-448 5-81 (85)
282 cd06397 PB1_UP1 Uncharacterize 37.1 74 0.0016 24.1 4.3 38 388-425 7-44 (82)
283 TIGR03260 met_CoM_red_D methyl 36.6 2.7E+02 0.0058 23.8 8.0 111 12-136 4-119 (150)
284 KOG4572 Predicted DNA-binding 36.2 47 0.001 36.1 4.3 52 389-440 3-56 (1424)
285 PRK08453 fliD flagellar cappin 35.3 1E+02 0.0023 33.4 6.8 85 312-398 135-237 (673)
286 cd01612 APG12_C Ubiquitin-like 35.2 55 0.0012 25.3 3.5 59 393-452 18-81 (87)
287 PF14451 Ub-Mut7C: Mut7-C ubiq 35.2 1.4E+02 0.003 22.7 5.7 53 238-299 22-75 (81)
288 PF00794 PI3K_rbd: PI3-kinase 34.9 1.6E+02 0.0035 23.3 6.5 71 381-451 17-101 (106)
289 PRK05738 rplW 50S ribosomal pr 34.7 52 0.0011 25.7 3.4 40 313-352 19-59 (92)
290 KOG2689 Predicted ubiquitin re 34.3 1.1E+02 0.0023 29.1 5.8 71 151-221 209-284 (290)
291 PRK08453 fliD flagellar cappin 34.1 1.2E+02 0.0026 32.9 7.1 86 235-321 134-236 (673)
292 KOG0007 Splicing factor 3a, su 33.6 21 0.00045 35.4 1.3 50 83-132 289-339 (341)
293 PRK05738 rplW 50S ribosomal pr 33.4 72 0.0016 24.9 4.0 33 390-422 20-52 (92)
294 smart00266 CAD Domains present 32.8 89 0.0019 23.4 4.1 36 400-435 18-55 (74)
295 cd06398 PB1_Joka2 The PB1 doma 32.8 1.3E+02 0.0027 23.5 5.3 40 236-275 7-52 (91)
296 PF08825 E2_bind: E2 binding d 32.4 52 0.0011 25.3 3.0 55 395-450 1-69 (84)
297 PF00794 PI3K_rbd: PI3-kinase 32.4 1.8E+02 0.0038 23.1 6.3 70 230-299 18-101 (106)
298 TIGR03636 L23_arch archaeal ri 32.4 61 0.0013 24.4 3.3 33 314-346 14-46 (77)
299 smart00266 CAD Domains present 32.3 81 0.0018 23.6 3.8 40 324-363 18-59 (74)
300 PF10407 Cytokin_check_N: Cdc1 31.9 1.3E+02 0.0028 22.5 4.8 25 315-339 3-27 (73)
301 PF02824 TGS: TGS domain; Int 31.7 90 0.002 22.0 4.0 58 3-69 1-58 (60)
302 KOG4572 Predicted DNA-binding 31.7 73 0.0016 34.8 4.8 53 9-61 3-57 (1424)
303 TIGR03636 L23_arch archaeal ri 31.5 79 0.0017 23.8 3.8 33 391-423 15-47 (77)
304 KOG0007 Splicing factor 3a, su 31.4 24 0.00053 34.9 1.3 51 311-361 289-340 (341)
305 PF02192 PI3K_p85B: PI3-kinase 30.9 91 0.002 23.6 4.0 33 241-273 2-42 (78)
306 PF03671 Ufm1: Ubiquitin fold 30.2 1.7E+02 0.0036 21.7 5.0 57 393-449 18-75 (76)
307 PF00276 Ribosomal_L23: Riboso 30.2 58 0.0013 25.4 3.0 38 391-428 21-59 (91)
308 PF02991 Atg8: Autophagy prote 29.8 1.8E+02 0.004 23.3 5.8 43 243-285 37-80 (104)
309 PF02017 CIDE-N: CIDE-N domain 29.0 1.3E+02 0.0028 22.8 4.5 39 325-363 21-61 (78)
310 PF11834 DUF3354: Domain of un 28.7 71 0.0015 23.5 3.0 43 401-449 26-68 (69)
311 PRK14548 50S ribosomal protein 28.2 78 0.0017 24.3 3.3 32 313-344 20-51 (84)
312 PF10407 Cytokin_check_N: Cdc1 27.9 2E+02 0.0043 21.5 5.3 61 391-452 3-70 (73)
313 PF00276 Ribosomal_L23: Riboso 27.6 85 0.0018 24.4 3.5 41 313-353 19-60 (91)
314 cd06398 PB1_Joka2 The PB1 doma 27.3 1.6E+02 0.0036 22.9 5.1 65 389-453 8-88 (91)
315 PF11816 DUF3337: Domain of un 26.1 1.5E+02 0.0033 29.2 5.8 63 393-455 250-330 (331)
316 PRK14548 50S ribosomal protein 25.5 1.2E+02 0.0026 23.3 3.9 34 390-423 21-54 (84)
317 cd01775 CYR1_RA Ubiquitin doma 25.3 2E+02 0.0043 22.7 5.1 32 312-343 10-41 (97)
318 KOG2561 Adaptor protein NUB1, 23.9 59 0.0013 32.9 2.4 52 394-445 53-104 (568)
319 cd01615 CIDE_N CIDE_N domain, 23.8 98 0.0021 23.4 3.1 35 400-434 20-56 (78)
320 cd01776 Rin1_RA Ubiquitin doma 23.6 1.2E+02 0.0025 23.2 3.3 34 240-273 15-49 (87)
321 cd01611 GABARAP Ubiquitin doma 23.2 2.9E+02 0.0063 22.4 6.0 43 242-284 44-87 (112)
322 PF02192 PI3K_p85B: PI3-kinase 22.9 98 0.0021 23.4 2.9 21 317-337 2-22 (78)
323 COG0299 PurN Folate-dependent 22.7 1.5E+02 0.0033 26.7 4.5 48 58-111 126-174 (200)
324 cd01615 CIDE_N CIDE_N domain, 22.5 1.4E+02 0.0031 22.6 3.7 40 324-363 20-61 (78)
325 CHL00030 rpl23 ribosomal prote 22.1 1.2E+02 0.0026 23.8 3.4 34 390-423 19-52 (93)
326 KOG3784 Sorting nexin protein 22.0 1.5E+02 0.0033 29.6 4.8 44 3-50 112-155 (407)
327 cd06536 CIDE_N_ICAD CIDE_N dom 22.0 1.5E+02 0.0033 22.5 3.7 36 400-435 20-59 (80)
328 PF06234 TmoB: Toluene-4-monoo 22.0 3.8E+02 0.0081 20.7 6.0 60 88-147 16-83 (85)
329 cd06539 CIDE_N_A CIDE_N domain 21.6 1.2E+02 0.0026 22.9 3.1 35 401-435 21-57 (78)
330 KOG3076 5'-phosphoribosylglyci 21.0 1.4E+02 0.0031 26.7 4.0 44 62-111 139-182 (206)
331 cd01782 AF6_RA_repeat1 Ubiquit 20.9 4.2E+02 0.0091 21.4 6.2 44 381-424 24-74 (112)
332 PF02505 MCR_D: Methyl-coenzym 20.7 3.8E+02 0.0082 23.1 6.2 106 320-439 9-120 (153)
333 CHL00030 rpl23 ribosomal prote 20.5 1.2E+02 0.0026 23.8 3.1 33 314-346 19-51 (93)
No 1
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.84 E-value=1.5e-20 Score=151.01 Aligned_cols=96 Identities=44% Similarity=0.642 Sum_probs=92.2
Q ss_pred cccccccCceEEEEEEecCceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccC
Q 012759 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440 (457)
Q Consensus 361 ~~~~i~~~~~l~l~~~~~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~ 440 (457)
..+++.+-+++++..++++.|+|+|+...|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~ 87 (103)
T cd01802 8 PFFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYN 87 (103)
T ss_pred CccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcC
Confidence 45667788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEecCCC
Q 012759 441 IQKESTLHLVLRLRGG 456 (457)
Q Consensus 441 I~~~~~i~l~~r~~GG 456 (457)
|+++++|++++|++||
T Consensus 88 I~~~stL~l~~~l~GG 103 (103)
T cd01802 88 ISEGCTLKLVLAMRGG 103 (103)
T ss_pred CCCCCEEEEEEecCCC
Confidence 9999999999999998
No 2
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.83 E-value=2e-20 Score=150.33 Aligned_cols=99 Identities=42% Similarity=0.623 Sum_probs=93.9
Q ss_pred CcccccccccccceeEEEEecCceEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEecCcccCCCCccc
Q 012759 54 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133 (457)
Q Consensus 54 ~tl~~y~i~~~sti~l~~~~~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~ 133 (457)
+.-..+++.+-+++|+++++++.|+|+|++++|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~ 84 (103)
T cd01802 5 KEPPFFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLN 84 (103)
T ss_pred cCCCccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHH
Confidence 34557889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcceEEEEeecc
Q 012759 134 DYNIQKESTLHLVLRLRGG 152 (457)
Q Consensus 134 ~y~i~~~s~i~l~~~~~~~ 152 (457)
+|+|.++++||+.++++||
T Consensus 85 dy~I~~~stL~l~~~l~GG 103 (103)
T cd01802 85 DYNISEGCTLKLVLAMRGG 103 (103)
T ss_pred HcCCCCCCEEEEEEecCCC
Confidence 9999999999999987764
No 3
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=8.5e-22 Score=150.72 Aligned_cols=76 Identities=99% Similarity=1.337 Sum_probs=74.7
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
||+|++++.|+|++++|+|||||+++|++|++++|||+++|+|+|+|++|+|++||++|+|+..||+|++++++++
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998887
No 4
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.80 E-value=1.8e-19 Score=136.87 Aligned_cols=74 Identities=41% Similarity=0.618 Sum_probs=71.7
Q ss_pred eeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
|+|+|++. ++++++|++++||++||++|++.+|+|+++|+|+|+|++|+|+.+|++|||++++||++++|++||
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 78999984 689999999999999999999999999999999999999999999999999999999999999998
No 5
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=1.2e-19 Score=150.38 Aligned_cols=76 Identities=96% Similarity=1.328 Sum_probs=74.6
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|||+++.|++++++|+++|||+++|+|||+++|||+++|+|+|.|++|+|+++|+||+|+.+||+|++++++++
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg 76 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998875
No 6
>PTZ00044 ubiquitin; Provisional
Probab=99.77 E-value=1.5e-18 Score=132.93 Aligned_cols=76 Identities=50% Similarity=0.822 Sum_probs=74.9
Q ss_pred eeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
|+|+|++.+|+++++++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|+++++|++.+|++||
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~gg 76 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998
No 7
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.77 E-value=1e-18 Score=132.84 Aligned_cols=73 Identities=36% Similarity=0.653 Sum_probs=71.6
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEe
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~ 73 (457)
|+|+|++++|++++++|++++||.++|++|+++.|+|+++|+|+|+|++|+|+++|++|+|.+++++|+++++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999875
No 8
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.76 E-value=1.3e-18 Score=132.22 Aligned_cols=74 Identities=41% Similarity=0.618 Sum_probs=70.8
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|||||++. ++++++|++++||.++|++|++++|+|+++|+|+|+|+.|+|+++|++|+|.+++|+|+++++.++
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 89999984 799999999999999999999999999999999999999999999999999999999999998753
No 9
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.76 E-value=2.3e-18 Score=130.86 Aligned_cols=74 Identities=32% Similarity=0.618 Sum_probs=72.8
Q ss_pred eEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 383 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
|||++..|+++++++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|||+++++|++++|++||
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~gg 74 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRGG 74 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999998
No 10
>PTZ00044 ubiquitin; Provisional
Probab=99.74 E-value=4.6e-18 Score=130.17 Aligned_cols=75 Identities=49% Similarity=0.803 Sum_probs=73.1
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecC
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~ 75 (457)
|||||++++|++++++|++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|++.+++++|+++++++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~g 75 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRG 75 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999998765
No 11
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.74 E-value=4.9e-18 Score=129.63 Aligned_cols=74 Identities=36% Similarity=0.634 Sum_probs=70.9
Q ss_pred CeEEEEcCCCcE-EEEE-ecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEec
Q 012759 1 MQIFVKTLTGKT-ITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (457)
Q Consensus 1 ~~i~~~~~~g~~-~~~~-v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~ 74 (457)
|||||++++|++ ++++ +.+++||.++|++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|+++++.
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 999999999996 7895 8999999999999999999999999999999999999999999999999999998864
No 12
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.74 E-value=8.7e-18 Score=128.71 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=74.8
Q ss_pred eeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
|+|+|++.+|+++.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++||+++|++|++.+|++||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998
No 13
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.74 E-value=8.3e-18 Score=127.82 Aligned_cols=73 Identities=36% Similarity=0.653 Sum_probs=71.3
Q ss_pred eeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEec
Q 012759 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 453 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~ 453 (457)
|+|+|+..+|++++++|++++||++||++|++++|+|+++|+|+|+|++|+|+.+|++|||+++++|++++|.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999885
No 14
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.73 E-value=2e-17 Score=126.73 Aligned_cols=76 Identities=55% Similarity=0.965 Sum_probs=74.7
Q ss_pred eeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
|+|+|+..+|+++.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++||+++|++|++.++++||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~gg 76 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998
No 15
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.71 E-value=2.1e-17 Score=125.48 Aligned_cols=73 Identities=32% Similarity=0.597 Sum_probs=70.7
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecC
Q 012759 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (457)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~ 75 (457)
|||++++|++++++|++++||.++|++|+++.|+|+++|+|+|+|+.|+|+++|++|+|.+++++++++++.+
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~g 73 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRG 73 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999988765
No 16
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.71 E-value=4.7e-17 Score=124.61 Aligned_cols=77 Identities=25% Similarity=0.480 Sum_probs=74.7
Q ss_pred ceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 012759 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG~ 457 (457)
+|+|+|+...|+.+.+++++++||++||++|+++.|+|+++|+|+|.|+.|+|+ +|++|||++|++|++...++||+
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~~ 77 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAGL 77 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeeccccC
Confidence 589999999999999999999999999999999999999999999999999999 99999999999999999999994
No 17
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.69 E-value=7.8e-17 Score=123.02 Aligned_cols=74 Identities=36% Similarity=0.634 Sum_probs=70.6
Q ss_pred eeeEEEcCCCCE-EEEE-ecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecC
Q 012759 381 MQIFVKTLTGKT-ITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 454 (457)
Q Consensus 381 ~~i~v~~~~g~~-~~l~-v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~ 454 (457)
|+|+|++.+|++ +.++ +.+++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||+++++|++.+|+-
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 799999999997 6885 8999999999999999999999999999999999999999999999999999999874
No 18
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.67 E-value=1.8e-16 Score=121.42 Aligned_cols=75 Identities=55% Similarity=0.948 Sum_probs=72.9
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecC
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~ 75 (457)
|+|+|++++|+++.++|++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|++.+++++|++++.++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~g 75 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRG 75 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999998765
No 19
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.67 E-value=1.7e-16 Score=119.31 Aligned_cols=70 Identities=39% Similarity=0.733 Sum_probs=68.1
Q ss_pred eEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEe
Q 012759 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 383 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r 452 (457)
|+|++..|+++.++|++++||++||++|++++|+|+++|+|+|+|++|+|+.+|++|||+++|+|+++.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 6889999999999999999999999999999999999999999999999999999999999999999876
No 20
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.67 E-value=1.8e-16 Score=121.38 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=73.5
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|++++|+++.++|++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|++.+++++|++++++++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987653
No 21
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=5.3e-17 Score=110.61 Aligned_cols=70 Identities=54% Similarity=0.911 Sum_probs=68.1
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEE
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~ 70 (457)
|-|-|++++|+-+.++++|.|+|+.||++|++++||||.+|+|+|.|+++.|+.|-++|+...+|.+|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 7789999999999999999999999999999999999999999999999999999999999999999984
No 22
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=8e-18 Score=129.01 Aligned_cols=76 Identities=99% Similarity=1.337 Sum_probs=74.6
Q ss_pred eeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
|++|+++..|++.+++|.|++||..+|+.|....||||++|+|+|+|+.|+|+.||++|||+..|||+++.|++||
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999999
No 23
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.66 E-value=3.5e-16 Score=117.52 Aligned_cols=72 Identities=24% Similarity=0.356 Sum_probs=69.2
Q ss_pred ceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEE
Q 012759 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~ 451 (457)
.|.|+|++..|+.+.++|++++||++||++|++..|+|++.|||+|+|+.|+|+.+|++|||++|++|++..
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 478999999999999999999999999999999999999999999999999999999999999999999864
No 24
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.66 E-value=1.6e-16 Score=119.43 Aligned_cols=70 Identities=39% Similarity=0.733 Sum_probs=67.9
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEE
Q 012759 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (457)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~ 72 (457)
|||++++|++++++|++++||.++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++|++|++.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999764
No 25
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.65 E-value=2.2e-16 Score=118.67 Aligned_cols=70 Identities=24% Similarity=0.383 Sum_probs=68.4
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEE
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~ 70 (457)
|+|+|++..|+.+.+++++++||.++|++|+++.|+|+++|+|+|.|+.|+|+.+|++|+|.+++++||.
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999999999985
No 26
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=9.7e-17 Score=133.17 Aligned_cols=77 Identities=95% Similarity=1.301 Sum_probs=75.4
Q ss_pred eeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 012759 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG~ 457 (457)
|+|||+.+.|++..++|.+++||..+|++|++.+|||+++|||+|.|++|+|+.+|+||+|+..+||++++|++||.
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~ 77 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGA 77 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999994
No 27
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.65 E-value=1.1e-15 Score=119.65 Aligned_cols=79 Identities=18% Similarity=0.439 Sum_probs=76.8
Q ss_pred cCceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
+..|+|+|++.+|+...++|.+++|++.||.+++++.|+|+++|+|+|+|+.|+++.|+++||+++|++|++.+|++||
T Consensus 9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG 87 (87)
T cd01763 9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG 87 (87)
T ss_pred CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999999999998
No 28
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.64 E-value=5.5e-16 Score=118.66 Aligned_cols=77 Identities=25% Similarity=0.483 Sum_probs=73.1
Q ss_pred ceEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEecCcccCCCCcccccccccCCcceEEEEeecce
Q 012759 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (457)
Q Consensus 76 ~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~~~~ 153 (457)
+|+|+|++..|+.+.+++++++||++||++|+++.|+|+++|+|+|+|+.|+|+ +|++|||.++++|+++....+|+
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~~ 77 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAGL 77 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeeccccC
Confidence 489999999999999999999999999999999999999999999999999999 99999999999999998877663
No 29
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.64 E-value=6.6e-16 Score=115.32 Aligned_cols=68 Identities=37% Similarity=0.581 Sum_probs=65.7
Q ss_pred EEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEE
Q 012759 384 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 384 ~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~ 451 (457)
.|+...|+++.++|++++||++||++|++.+|+|+++|+|+|+|++|+|+.+|++|||+++++|+|.+
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 57888999999999999999999999999999999999999999999999999999999999999976
No 30
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.64 E-value=4.1e-16 Score=116.44 Aligned_cols=67 Identities=37% Similarity=0.606 Sum_probs=65.1
Q ss_pred EEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEE
Q 012759 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (457)
Q Consensus 5 ~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~ 71 (457)
|++++|++++++|++++||.++|++|++++|+|+++|+|+|+|+.|+|+.++.+|+|.+++++|+++
T Consensus 3 vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 3 VRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred EEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 6889999999999999999999999999999999999999999999999999999999999999875
No 31
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.63 E-value=1.3e-15 Score=116.93 Aligned_cols=73 Identities=38% Similarity=0.705 Sum_probs=70.6
Q ss_pred eeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCC--CCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEec
Q 012759 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 453 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gi--p~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~ 453 (457)
|+|+|++.+|+++.++|++++||++||++|++.+|+ |+++|+|+|+|+.|+|+.+|++|||++|++|++.++-
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence 789999999999999999999999999999999999 9999999999999999999999999999999998864
No 32
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2.2e-16 Score=107.62 Aligned_cols=70 Identities=54% Similarity=0.911 Sum_probs=67.5
Q ss_pred eEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEecCcccCCCCcccccccccCCcceEE
Q 012759 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (457)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~ 146 (457)
|.|.|++++|+.+.++++++|+|+.+|+++++++||||.+|+|+|+|+++.|+.|-++|++.-||++|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 5688999999999999999999999999999999999999999999999999999999999999999974
No 33
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.62 E-value=1.1e-15 Score=116.61 Aligned_cols=69 Identities=33% Similarity=0.677 Sum_probs=67.3
Q ss_pred CCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 388 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
++|++++++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++.+|++||
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg 73 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGG 73 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCC
Confidence 468999999999999999999999999999999999999999999999999999999999999999998
No 34
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.62 E-value=1.4e-15 Score=116.74 Aligned_cols=73 Identities=38% Similarity=0.705 Sum_probs=70.4
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCC--CCccceEeeccEEccCCCcccccccccccceeEEEEe
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gi--p~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~ 73 (457)
|+|+|++++|+++++++.+++||.++|++|+++.|+ |+++|+|+|+|+.|+|+.+|++|++.+++++++.++-
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence 899999999999999999999999999999999999 9999999999999999999999999999999987653
No 35
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.61 E-value=1.3e-15 Score=115.20 Aligned_cols=72 Identities=44% Similarity=0.704 Sum_probs=69.9
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEE
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~ 72 (457)
|+|+|++++|+++++++++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|++.+++++|++.+
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999753
No 36
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.61 E-value=2.3e-15 Score=113.90 Aligned_cols=72 Identities=44% Similarity=0.704 Sum_probs=69.7
Q ss_pred eeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEe
Q 012759 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r 452 (457)
|+|+|+..+|+++.+++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++||+++|++|++..|
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999875
No 37
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.60 E-value=2.7e-15 Score=112.55 Aligned_cols=69 Identities=57% Similarity=0.970 Sum_probs=66.1
Q ss_pred EcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecC
Q 012759 386 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 454 (457)
Q Consensus 386 ~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~ 454 (457)
++.+|+.+.++|++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|||++|++|++.+|.|
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~~ 69 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKPR 69 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESSE
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEecC
Confidence 467899999999999999999999999999999999999999999999999999999999999999864
No 38
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.59 E-value=4.2e-15 Score=111.95 Aligned_cols=71 Identities=34% Similarity=0.489 Sum_probs=67.4
Q ss_pred eeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEe
Q 012759 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r 452 (457)
+.|+|++.+|+ ..+++++++||++||++|++.+|+|+++|+|.|+|+.|+|+.+|++|||++|++|++++|
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 46899999997 589999999999999999999999999999999999999999999999999999999886
No 39
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.58 E-value=2.3e-15 Score=116.02 Aligned_cols=72 Identities=32% Similarity=0.451 Sum_probs=70.0
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceE--eeccEEccCCCcccccccccccceeEEEE
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l--~~~g~~L~~~~tl~~y~i~~~sti~l~~~ 72 (457)
|+|+|++.+|++++++|++++||.++|.+|+++.|+|+++|+| +|+|+.|+|+.+|++|++.++++++++++
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQ 76 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEE
Confidence 7899999999999999999999999999999999999999999 89999999999999999999999999886
No 40
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.58 E-value=3.8e-15 Score=114.81 Aligned_cols=73 Identities=33% Similarity=0.474 Sum_probs=70.6
Q ss_pred ceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEE--EECCeEcCCCCcccccCCCCCCEEEEEEe
Q 012759 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l--~~~g~~L~d~~tL~~~~I~~~~~i~l~~r 452 (457)
+|+|+|+...|+++.+++++++||++||++|++..|+|+++|+| .|+|+.|+|+.+|++|||++|++|+++++
T Consensus 2 ~~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 2 GWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQ 76 (80)
T ss_pred ceEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEE
Confidence 38999999999999999999999999999999999999999999 88999999999999999999999999988
No 41
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.58 E-value=3.7e-15 Score=112.20 Aligned_cols=71 Identities=34% Similarity=0.489 Sum_probs=67.7
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEE
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~ 72 (457)
|.|+|++.+|+ .++++++++||.++|++|+++.|+|+.+|+|+|+|+.|+|+.+|++|++.+++++|++++
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 67999999997 599999999999999999999999999999999999999999999999999999999864
No 42
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.56 E-value=8.6e-15 Score=109.97 Aligned_cols=68 Identities=35% Similarity=0.543 Sum_probs=64.1
Q ss_pred eEEEcC-CCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCC-CcccccCCCCCCEEEEE
Q 012759 383 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLV 450 (457)
Q Consensus 383 i~v~~~-~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~-~tL~~~~I~~~~~i~l~ 450 (457)
|+|+.. .|+++.++|++++||++||++|++.+|+|+++|+|+|+|++|+|+ .+|++|||++|++|++.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 567888 899999999999999999999999999999999999999999987 58999999999999874
No 43
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.53 E-value=1.2e-14 Score=109.22 Aligned_cols=68 Identities=35% Similarity=0.543 Sum_probs=64.5
Q ss_pred EEEEcC-CCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCC-CcccccccccccceeEE
Q 012759 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLV 70 (457)
Q Consensus 3 i~~~~~-~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~-~tl~~y~i~~~sti~l~ 70 (457)
|+|++. +|++++++|++++||.++|++|++++|+|+++|+|+|+|+.|+|+ .+|++|+|.+++++|+.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 578999 999999999999999999999999999999999999999999887 68999999999999974
No 44
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.52 E-value=2.6e-14 Score=107.13 Aligned_cols=69 Identities=57% Similarity=0.970 Sum_probs=66.1
Q ss_pred EcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEec
Q 012759 6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (457)
Q Consensus 6 ~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~ 74 (457)
++++|++++++|.+++||.++|.+|+++.|+|++.|+|+|+|+.|+|+.+|.+|+|.++++++++++++
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~~ 69 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKPR 69 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESSE
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEecC
Confidence 678999999999999999999999999999999999999999999999999999999999999988653
No 45
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.51 E-value=2.6e-14 Score=109.03 Aligned_cols=69 Identities=33% Similarity=0.677 Sum_probs=65.9
Q ss_pred CCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012759 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 8 ~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
++|++++++|++++||.++|++|+...|+|++.|+|+|+|+.|+|+++|++|++.+++++|++++++++
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg 73 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGG 73 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCC
Confidence 689999999999999999999999999999999999999999999999999999999999999987653
No 46
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.51 E-value=3.1e-14 Score=107.31 Aligned_cols=71 Identities=25% Similarity=0.282 Sum_probs=63.7
Q ss_pred CeEEEEcCCCcE--EEEEecCCCcHHHHHHHHhhhcC--CCCccceEeeccEEccCCCcccccc--cccccceeEEE
Q 012759 1 MQIFVKTLTGKT--ITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLVL 71 (457)
Q Consensus 1 ~~i~~~~~~g~~--~~~~v~~~dtv~~ik~ki~~~~g--ip~~~q~l~~~g~~L~~~~tl~~y~--i~~~sti~l~~ 71 (457)
|.++|++++|+. |++++++++||.++|++|++..+ .|+++|+|+|.|+.|+|+.||++|. +..+.|+|||.
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 578999999998 55666899999999999998874 5579999999999999999999995 99999999974
No 47
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.50 E-value=7.5e-14 Score=109.23 Aligned_cols=76 Identities=18% Similarity=0.467 Sum_probs=73.2
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|++++|+.++++|.+++|+..||++++++.|+|+++|+|+|+|+.|+++.|+++|++.++++|+++++++++
T Consensus 12 i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG 87 (87)
T cd01763 12 INLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG 87 (87)
T ss_pred EEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999887653
No 48
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.49 E-value=7.5e-14 Score=105.27 Aligned_cols=72 Identities=24% Similarity=0.256 Sum_probs=64.2
Q ss_pred ceeeEEEcCCCCEEE--EEecCCchHHHHHHHHhhhcC--CCCCCeEEEECCeEcCCCCcccccC--CCCCCEEEEEE
Q 012759 380 GMQIFVKTLTGKTIT--LEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLVL 451 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~--l~v~~~~tV~~lK~~i~~~~g--ip~~~q~l~~~g~~L~d~~tL~~~~--I~~~~~i~l~~ 451 (457)
++.|+|++++++.+. +++++++||.+||++|++..+ .|+++|+|+|.|+.|+|+.||++|+ +.++.||||+.
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 468999999999844 555899999999999999874 4579999999999999999999996 99999999985
No 49
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.48 E-value=8.7e-14 Score=104.90 Aligned_cols=70 Identities=29% Similarity=0.469 Sum_probs=66.1
Q ss_pred eeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEE
Q 012759 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~ 451 (457)
++|+|++. |+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++..
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 46889986 88999999999999999999999999999999999999999999999999999999998863
No 50
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.44 E-value=2.2e-13 Score=102.83 Aligned_cols=69 Identities=23% Similarity=0.440 Sum_probs=64.9
Q ss_pred eeeEEEeeCCcEEEEEeecCccHHHHHHHhhhhcCCCCCCceEEe---cCeeccCCCcccccccccCceEEEE
Q 012759 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLV 374 (457)
Q Consensus 305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~---~g~~L~d~~~l~~~~i~~~~~l~l~ 374 (457)
+.|+|| |+|++|++++++++||++||++|++++|+|+++|+|++ .|+.++|+.+|++|++.+++.++|+
T Consensus 1 ~~i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVK-WGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 357787 99999999999999999999999999999999999996 8899999999999999999999986
No 51
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.44 E-value=2.3e-13 Score=102.55 Aligned_cols=70 Identities=29% Similarity=0.469 Sum_probs=66.0
Q ss_pred eEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEecCcccCCCCcccccccccCCcceEEE
Q 012759 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (457)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~ 147 (457)
|+|+||+. |+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|++.+|++|+++.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 47889986 99999999999999999999999999999999999999999999999999999999998863
No 52
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.41 E-value=5.4e-13 Score=100.76 Aligned_cols=69 Identities=23% Similarity=0.440 Sum_probs=64.2
Q ss_pred eEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEe---cCcccCCCCcccccccccCCcceEE
Q 012759 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLV 146 (457)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~---~g~~L~d~~tl~~y~i~~~s~i~l~ 146 (457)
|.|.|| .+|+.+.++|++++||++||++|++..|+|+++|+|+| .|+.|.|+.+|++|+|.+|+.|+|+
T Consensus 1 ~~i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVK-WGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 457776 68899999999999999999999999999999999996 8999999999999999999999886
No 53
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.38 E-value=1e-12 Score=96.77 Aligned_cols=64 Identities=61% Similarity=0.864 Sum_probs=61.0
Q ss_pred eeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCC
Q 012759 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 445 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~ 445 (457)
|+|+|++.. +.+.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 689999988 6899999999999999999999999999999999999999999999999999885
No 54
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.38 E-value=1.1e-12 Score=99.13 Aligned_cols=69 Identities=29% Similarity=0.372 Sum_probs=62.0
Q ss_pred eEEEEc--CCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEcc-CCCcccccccc-cccceeEEE
Q 012759 2 QIFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQ-KESTLHLVL 71 (457)
Q Consensus 2 ~i~~~~--~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~-~~~tl~~y~i~-~~sti~l~~ 71 (457)
.++|++ ..|++++++|++++||.+||++|++++|+|+++|+| |+|+.|. |+++|++|++. +++++||.+
T Consensus 2 ~~~~~~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 2 NVSVEDAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred EEEEeccccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 466665 568999999999999999999999999999999999 9999985 67899999998 779999864
No 55
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.37 E-value=1.6e-12 Score=98.18 Aligned_cols=65 Identities=29% Similarity=0.364 Sum_probs=59.2
Q ss_pred EcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcC-CCCcccccCCC-CCCEEEEEE
Q 012759 386 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQ-KESTLHLVL 451 (457)
Q Consensus 386 ~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~-d~~tL~~~~I~-~~~~i~l~~ 451 (457)
+...|.+++++|++++||++||.+|++++|+|+++|+| |+|+.|. |+.+|++||++ +|+++++.+
T Consensus 8 ~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 8 AQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred cccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 34567899999999999999999999999999999999 9999996 66899999999 889999864
No 56
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.32 E-value=3.6e-12 Score=93.85 Aligned_cols=64 Identities=61% Similarity=0.864 Sum_probs=61.5
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCccccccccccc
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 65 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~s 65 (457)
|+|+|++.+ +++.++|++++||.++|++|+++.|+|++.|+|+|+|+.|.|+.+|++|++.+++
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 899999998 7999999999999999999999999999999999999999999999999998765
No 57
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.31 E-value=1.5e-12 Score=96.62 Aligned_cols=54 Identities=31% Similarity=0.533 Sum_probs=49.6
Q ss_pred cCCCCHHHHHHHHhhhh--CCC-CCCeEEEecCcccCCCCcccccccccCCcceEEE
Q 012759 94 ESSDTIDNVKAKIQDKE--GIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (457)
Q Consensus 94 ~~~~tV~~lK~~i~~~~--gip-~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~ 147 (457)
+.++||.++|++|+++. |+| +++|+|+|+|+.|+|++||++|+|+++++||++.
T Consensus 18 ~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 18 PGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred CccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 35889999999999994 575 9999999999999999999999999999999974
No 58
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.31 E-value=2.5e-12 Score=95.49 Aligned_cols=55 Identities=33% Similarity=0.549 Sum_probs=50.0
Q ss_pred ec-CCchHHHHHHHHhhhc--CCC-CCCeEEEECCeEcCCCCcccccCCCCCCEEEEEE
Q 012759 397 VE-SSDTIDNVKAKIQDKE--GIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 397 v~-~~~tV~~lK~~i~~~~--gip-~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~ 451 (457)
|+ .++||.+||++|+++. |++ +++|+|+|.|+.|+|+.||++|||++|++|+++.
T Consensus 16 ~~~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 16 VSPGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred cCCccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 44 5679999999999995 575 9999999999999999999999999999999875
No 59
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.29 E-value=2.6e-12 Score=101.85 Aligned_cols=73 Identities=27% Similarity=0.373 Sum_probs=64.1
Q ss_pred eEEEEcCCCc-EEEEEecCCCcHHHHHHHHh-----hhcCCC--CccceEeeccEEccCCCcccccc------cccccce
Q 012759 2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQ-----DKEGIP--PDQQRLIFAGKQLEDGRTLADYN------IQKESTL 67 (457)
Q Consensus 2 ~i~~~~~~g~-~~~~~v~~~dtv~~ik~ki~-----~~~gip--~~~q~l~~~g~~L~~~~tl~~y~------i~~~sti 67 (457)
.|-|+..+|. .=+..+.++|||.+||++|+ +++|+| +++|+|+|+|++|+|++||++|+ +...+|+
T Consensus 6 e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~Tm 85 (113)
T cd01814 6 EIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVITM 85 (113)
T ss_pred EEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceEE
Confidence 4667888885 34588889999999999999 666777 99999999999999999999999 8889999
Q ss_pred eEEEEec
Q 012759 68 HLVLRLR 74 (457)
Q Consensus 68 ~l~~~~~ 74 (457)
|+++++.
T Consensus 86 Hvvlr~~ 92 (113)
T cd01814 86 HVVVQPP 92 (113)
T ss_pred EEEecCC
Confidence 9999865
No 60
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.27 E-value=6.9e-12 Score=123.45 Aligned_cols=73 Identities=30% Similarity=0.601 Sum_probs=70.0
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcC---CCCccceEeeccEEccCCCcccccccccccceeEEEEe
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~g---ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~ 73 (457)
|+|+||+++|++++++|++++||.+||.+|++..| +|+++|+|+|.|+.|+|+++|++|+|.+++++++.+.-
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k 76 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSK 76 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEecc
Confidence 89999999999999999999999999999999998 99999999999999999999999999999999887653
No 61
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.25 E-value=5.2e-12 Score=100.15 Aligned_cols=76 Identities=26% Similarity=0.364 Sum_probs=65.3
Q ss_pred CceEEEEEccCCcE-EEEEEcCCCCHHHHHHHHh-----hhhCCC--CCCeEEEecCcccCCCCcccccc------cccC
Q 012759 75 GGMQIFVKTLTGKT-ITLEVESSDTIDNVKAKIQ-----DKEGIP--PDQQRLIFAGKQLEDGRTLADYN------IQKE 140 (457)
Q Consensus 75 ~~~~i~vk~~~g~~-~~l~v~~~~tV~~lK~~i~-----~~~gip--~~~q~L~~~g~~L~d~~tl~~y~------i~~~ 140 (457)
+.+.|.++..+|.. =+..+++++||+++|++|+ +++|+| +++|+|+|+||.|+|++||++|+ +...
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~ 82 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGV 82 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCc
Confidence 34667778888865 4788899999999999999 555666 99999999999999999999999 7777
Q ss_pred CcceEEEEee
Q 012759 141 STLHLVLRLR 150 (457)
Q Consensus 141 s~i~l~~~~~ 150 (457)
.|+||++++.
T Consensus 83 ~TmHvvlr~~ 92 (113)
T cd01814 83 ITMHVVVQPP 92 (113)
T ss_pred eEEEEEecCC
Confidence 9999998864
No 62
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.24 E-value=1.8e-11 Score=120.52 Aligned_cols=72 Identities=31% Similarity=0.618 Sum_probs=69.4
Q ss_pred eeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcC---CCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEe
Q 012759 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~g---ip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r 452 (457)
|+|+||+..|+++.++|++++||.+||.+|+...| +|+++|+|+|+|+.|+|+++|++|||+++++|++.+.
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~ 75 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVS 75 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEec
Confidence 78999999999999999999999999999999998 9999999999999999999999999999999988765
No 63
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.16 E-value=1.1e-10 Score=87.15 Aligned_cols=67 Identities=67% Similarity=0.992 Sum_probs=63.2
Q ss_pred EEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEE
Q 012759 385 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 385 v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~ 451 (457)
|+..+|+.+.+.+++++||.+||.+|+..+|+|++.|+|.|+|+.|+|+.+|++|++.++++|++..
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 5666789999999999999999999999999999999999999999999999999999999999864
No 64
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.16 E-value=1.1e-10 Score=88.20 Aligned_cols=71 Identities=34% Similarity=0.633 Sum_probs=65.9
Q ss_pred eeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCC-CCeEEEECCeEcCCCCcccccCCCCCCEEEEEE
Q 012759 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~-~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~ 451 (457)
|+|++++.+|+.+.+.|.+++++..|++.+++..|+|+ +.++|.|+|+.|+++.|++++|+++|++|++.+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 67999999999999999999999999999999999999 999999999999999999999999999999864
No 65
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.13 E-value=1.2e-10 Score=89.33 Aligned_cols=62 Identities=27% Similarity=0.326 Sum_probs=57.2
Q ss_pred EEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCC-CcccccCCCCCCEEEEEEec
Q 012759 392 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRL 453 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~-~tL~~~~I~~~~~i~l~~r~ 453 (457)
...++|++++||.+||.+|+..+++||.+|+|.|+|+.|+|+ .||++|||.++|+|.|.+..
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llide 78 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADE 78 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecC
Confidence 467899999999999999999999999999999999999754 69999999999999998753
No 66
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.13 E-value=8.7e-11 Score=90.13 Aligned_cols=62 Identities=27% Similarity=0.328 Sum_probs=57.1
Q ss_pred EEEEEeecCccHHHHHHHhhhhcCCCCCCceEEecCeec-cCCCcccccccccCceEEEEEEe
Q 012759 316 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKESTLHLVLRL 377 (457)
Q Consensus 316 ~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L-~d~~~l~~~~i~~~~~l~l~~~~ 377 (457)
..+++|++++||++||.+|.++++|||+.|+|.++|..| +|.+||++||+.++++++|..+.
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llide 78 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADE 78 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecC
Confidence 456889999999999999999999999999999999988 67899999999999999998653
No 67
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.07 E-value=1.8e-10 Score=113.29 Aligned_cols=74 Identities=36% Similarity=0.565 Sum_probs=69.8
Q ss_pred ceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecC
Q 012759 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 454 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~ 454 (457)
.+.|.|++.++ .+.+.|..+.||.+||+.|....++|+++++|+|.||.|.|+.||..|||++|+||||+++..
T Consensus 15 ~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 15 LIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred eeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence 36789999888 799999999999999999999999999999999999999999999999999999999998753
No 68
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.07 E-value=3.3e-10 Score=84.55 Aligned_cols=67 Identities=67% Similarity=0.992 Sum_probs=63.1
Q ss_pred EEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEecCcccCCCCcccccccccCCcceEEE
Q 012759 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (457)
Q Consensus 81 vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~ 147 (457)
|+..+|+.+.+++++++||+++|++|+...|+|+++|+|.|+|+.|+|..+|.+|++.++++|++..
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 6677899999999999999999999999999999999999999999999999999999999988764
No 69
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.06 E-value=2.1e-10 Score=112.91 Aligned_cols=74 Identities=36% Similarity=0.565 Sum_probs=69.8
Q ss_pred ceeeeEeeccCceEEEeecCCChHHHHHHHHhhhhCCCCCceEEEECCeecCCCCCccccCCCcCcEEEEEEEec
Q 012759 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (457)
Q Consensus 152 ~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~y~I~~~~~i~l~~~~~ 226 (457)
.+.|+||+... ...+.|..+.||.+||++|..++++|+++++|||+||+|+|+.||..|||++|.||||+.+..
T Consensus 15 ~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 15 LIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred eeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence 36788999877 889999999999999999999999999999999999999999999999999999999999854
No 70
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.03 E-value=9.8e-10 Score=82.85 Aligned_cols=73 Identities=84% Similarity=1.127 Sum_probs=69.4
Q ss_pred eEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEec
Q 012759 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (457)
Q Consensus 2 ~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~ 74 (457)
++++.+..|+++++++.++++|..+|.+|..+.|+|.+.|++.+.|+.|.|+.++.+|+|..+++++++.++.
T Consensus 1 ~~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 1 QIFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred CEEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 4788999999999999999999999999999999999999999999999999999999999999999987754
No 71
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.02 E-value=4.6e-10 Score=104.93 Aligned_cols=73 Identities=38% Similarity=0.667 Sum_probs=69.4
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcC--CCCccceEeeccEEccCCCcccccccccccceeEEEEe
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~g--ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~ 73 (457)
|.|+|||+.|.+|++++.|+|||.++|.+|+...| .|+.+|+|+|+|+.|.|+.++.+|++..++-+.+.+.-
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK 75 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSK 75 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEec
Confidence 89999999999999999999999999999999988 99999999999999999999999999999988877653
No 72
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.02 E-value=6.5e-10 Score=83.87 Aligned_cols=71 Identities=34% Similarity=0.633 Sum_probs=66.2
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCC-ccceEeeccEEccCCCcccccccccccceeEEE
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~-~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~ 71 (457)
|+|+|+..+|+.+.+.|.+++++..++++.+++.|+|+ +..+|+|+|+.|+++.|+++|++.+++++++++
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 78999999999999999999999999999999999999 999999999999999999999999999999864
No 73
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=98.95 E-value=1e-09 Score=102.68 Aligned_cols=74 Identities=38% Similarity=0.657 Sum_probs=70.1
Q ss_pred eEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhC--CCCCCeEEEecCcccCCCCcccccccccCCcceEEEEee
Q 012759 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (457)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~g--ip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~ 150 (457)
|.|+||++.|..|+++|.+++||.++|.+|+...| .|+++|.|+|+|+.|.|+.++.+|++.+++.|-+++...
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence 68999999999999999999999999999999988 999999999999999999999999999999988887543
No 74
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.93 E-value=8.4e-09 Score=77.67 Aligned_cols=74 Identities=84% Similarity=1.159 Sum_probs=70.0
Q ss_pred eEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 383 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
+++.+..|+...+++.+..+|..+|.+|+...|+|++.|++.+.|+.|+|+.+|++|+|..++++++..+++++
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~~~ 75 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLRGG 75 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 56777889999999999999999999999999999999999999999999999999999999999999998764
No 75
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.87 E-value=1e-08 Score=79.50 Aligned_cols=69 Identities=22% Similarity=0.401 Sum_probs=56.8
Q ss_pred eeEEEcC-CCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEE-ECCe-----Ec-CCCCcccccCCCCCCEEEEE
Q 012759 382 QIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK-----QL-EDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 382 ~i~v~~~-~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~-~~g~-----~L-~d~~tL~~~~I~~~~~i~l~ 450 (457)
.|+|... +....+-.++++.||++||++++..+|+||+.|+|. |.|+ .| +|+.+|++||+++|++||+.
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 4555543 233455569999999999999999999999999995 7887 56 57779999999999999986
No 76
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.84 E-value=9.2e-09 Score=81.21 Aligned_cols=72 Identities=31% Similarity=0.445 Sum_probs=61.2
Q ss_pred eeEEEcCCCC-EEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCC-------CCCCEEEEEEec
Q 012759 382 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-------QKESTLHLVLRL 453 (457)
Q Consensus 382 ~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I-------~~~~~i~l~~r~ 453 (457)
.+|++-...+ ++-+++.+++||.+||.+|+.....||++|+|+..+..|+|++||++||+ +...++-|.+|.
T Consensus 2 dvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r~ 81 (119)
T cd01788 2 DVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFRS 81 (119)
T ss_pred ceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEec
Confidence 3455433333 46678999999999999999999999999999988889999999999999 678899888885
No 77
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.73 E-value=4.1e-08 Score=76.84 Aligned_cols=70 Identities=27% Similarity=0.570 Sum_probs=56.6
Q ss_pred eeeEEEcCCC--CEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEC----C---eEc-CCCCcccccCCCCCCEEEEE
Q 012759 381 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----G---KQL-EDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 381 ~~i~v~~~~g--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~----g---~~L-~d~~tL~~~~I~~~~~i~l~ 450 (457)
+.|+|..... ......++++.||++||.+|+..+|+|++.|+|.+. + ..+ +|+++|.+||+++|++|++.
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 3566765544 488899999999999999999999999999999886 1 234 36789999999999999985
No 78
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.69 E-value=7.6e-08 Score=74.60 Aligned_cols=70 Identities=21% Similarity=0.377 Sum_probs=57.8
Q ss_pred EEEEEcc-CCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEE-ecCc-----cc-CCCCcccccccccCCcceEEE
Q 012759 78 QIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK-----QL-EDGRTLADYNIQKESTLHLVL 147 (457)
Q Consensus 78 ~i~vk~~-~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~-~~g~-----~L-~d~~tl~~y~i~~~s~i~l~~ 147 (457)
.|+|... +.......++++.||.+||++++...|+||..|+|. |.|+ .| +|..+|..|++.+|++||+.-
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD 80 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID 80 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence 3455432 234456669999999999999999999999999994 8887 45 688999999999999999864
No 79
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.59 E-value=1.1e-07 Score=75.17 Aligned_cols=73 Identities=32% Similarity=0.458 Sum_probs=63.7
Q ss_pred CeEEEEcCCCc-EEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCccccccc-------ccccceeEEEE
Q 012759 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-------QKESTLHLVLR 72 (457)
Q Consensus 1 ~~i~~~~~~g~-~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i-------~~~sti~l~~~ 72 (457)
|++|+..-.-| |+.++.++++||.++|++|+.-...|++.|+|+-++..|+|++||.||++ +.-+++-|.++
T Consensus 1 MdvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r 80 (119)
T cd01788 1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFR 80 (119)
T ss_pred CceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEe
Confidence 78999987665 67799999999999999999999999999999988888999999999999 55566666665
Q ss_pred e
Q 012759 73 L 73 (457)
Q Consensus 73 ~ 73 (457)
-
T Consensus 81 ~ 81 (119)
T cd01788 81 S 81 (119)
T ss_pred c
Confidence 3
No 80
>PLN02560 enoyl-CoA reductase
Probab=98.59 E-value=1.2e-07 Score=91.40 Aligned_cols=70 Identities=31% Similarity=0.544 Sum_probs=62.0
Q ss_pred eeeEEEcCCCCEE---EEEecCCchHHHHHHHHhhhcCC-CCCCeEEEEC---C----eEcCCCCcccccCCCCCCEEEE
Q 012759 381 MQIFVKTLTGKTI---TLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA---G----KQLEDGRTLADYNIQKESTLHL 449 (457)
Q Consensus 381 ~~i~v~~~~g~~~---~l~v~~~~tV~~lK~~i~~~~gi-p~~~q~l~~~---g----~~L~d~~tL~~~~I~~~~~i~l 449 (457)
|+|.|+..+|+.+ ++++++++||+|||.+|+++.++ ++++|||.+. | +.|.|+++|+++|+++|++|++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 6788888888887 79999999999999999999987 8999999983 3 4889999999999999999876
Q ss_pred E
Q 012759 450 V 450 (457)
Q Consensus 450 ~ 450 (457)
.
T Consensus 81 k 81 (308)
T PLN02560 81 K 81 (308)
T ss_pred E
Confidence 3
No 81
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.54 E-value=4.4e-07 Score=65.76 Aligned_cols=73 Identities=27% Similarity=0.395 Sum_probs=64.5
Q ss_pred eeeeEeeccCceEEEeecCCChHHHHHHHHhhhhCCCCCceEEEEC---C--eecCCCCCccccCCCcCcEEEEEEEec
Q 012759 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLRLR 226 (457)
Q Consensus 153 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~---g--~~L~d~~tL~~y~I~~~~~i~l~~~~~ 226 (457)
++|+|+..++....+.|+|..+|..+|++|....|++- .|||.|. | +.|.+.++|++|||..+..|.+..+.+
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT~p 78 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLETFP 78 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEecCC
Confidence 47889999999999999999999999999999999998 8999986 2 457899999999999998888776543
No 82
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=8.9e-07 Score=68.55 Aligned_cols=78 Identities=18% Similarity=0.460 Sum_probs=73.3
Q ss_pred ceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 012759 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG~ 457 (457)
-+++.|...+|....+.|..++....|+..-+++.|++.+..|++|+|+++...+|-+++++++|+.|.+...+.||+
T Consensus 20 hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG~ 97 (99)
T KOG1769|consen 20 HINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGGF 97 (99)
T ss_pred eEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccCC
Confidence 356677777888889999999999999999999999999999999999999999999999999999999999999995
No 83
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.51 E-value=4.2e-07 Score=73.86 Aligned_cols=75 Identities=29% Similarity=0.492 Sum_probs=56.1
Q ss_pred ceEEEEEccCCc-EEEEEEcCCCCHHHHHHHHhhhhC-------CCCCCeEEEecCcccCCCCcccccccccCC------
Q 012759 76 GMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEG-------IPPDQQRLIFAGKQLEDGRTLADYNIQKES------ 141 (457)
Q Consensus 76 ~~~i~vk~~~g~-~~~l~v~~~~tV~~lK~~i~~~~g-------ip~~~q~L~~~g~~L~d~~tl~~y~i~~~s------ 141 (457)
.+.|..+..+|+ ..++..++++||++||+.|...+. ..++..+|+|.||.|+|+.+|++|.+..+.
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~ 81 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPT 81 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--E
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCE
Confidence 355666778998 889999999999999999997552 235679999999999999999999987666
Q ss_pred cceEEEEee
Q 012759 142 TLHLVLRLR 150 (457)
Q Consensus 142 ~i~l~~~~~ 150 (457)
++||++++.
T Consensus 82 vmHlvvrp~ 90 (111)
T PF13881_consen 82 VMHLVVRPN 90 (111)
T ss_dssp EEEEEE-SS
T ss_pred EEEEEecCC
Confidence 577777653
No 84
>PLN02560 enoyl-CoA reductase
Probab=98.51 E-value=1.9e-07 Score=90.01 Aligned_cols=69 Identities=32% Similarity=0.560 Sum_probs=62.7
Q ss_pred CeEEEEcCCCcEE---EEEecCCCcHHHHHHHHhhhcCC-CCccceEeec---c----EEccCCCcccccccccccceeE
Q 012759 1 MQIFVKTLTGKTI---TLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA---G----KQLEDGRTLADYNIQKESTLHL 69 (457)
Q Consensus 1 ~~i~~~~~~g~~~---~~~v~~~dtv~~ik~ki~~~~gi-p~~~q~l~~~---g----~~L~~~~tl~~y~i~~~sti~l 69 (457)
|+|.|+..+|+++ ++++++++||++||.+|+++.++ ++++|+|.+. | ..|+|+.+|++|++.+++++++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 8999999999997 89999999999999999999987 8999999983 3 3889999999999999998765
No 85
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.49 E-value=2e-07 Score=71.16 Aligned_cols=71 Identities=28% Similarity=0.426 Sum_probs=45.7
Q ss_pred CceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEC---CeEc--CCCCcccccCCCCCCEEEEE
Q 012759 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQL--EDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~---g~~L--~d~~tL~~~~I~~~~~i~l~ 450 (457)
..|-|.|++.+| ++.+++++++|+.+|+++|++..++|...|.|+.+ ...+ .++.+|+++||+.||.|+|.
T Consensus 3 ~~milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 3 SSMILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp ---EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred ccEEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 467889999988 68899999999999999999999999999988764 2355 46789999999999999974
No 86
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.48 E-value=9.6e-07 Score=71.76 Aligned_cols=73 Identities=30% Similarity=0.510 Sum_probs=55.3
Q ss_pred eeeEEEcCCCC-EEEEEecCCchHHHHHHHHhhhc-------CCCCCCeEEEECCeEcCCCCcccccCCCCCC------E
Q 012759 381 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKE-------GIPPDQQRLIFAGKQLEDGRTLADYNIQKES------T 446 (457)
Q Consensus 381 ~~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~-------gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~------~ 446 (457)
+.|.++..+|. +..+.+++++||++||+.|.+.+ -..+...||+|.|+.|+|+.||++|++..|+ +
T Consensus 3 i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~v 82 (111)
T PF13881_consen 3 IELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTV 82 (111)
T ss_dssp EEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EE
T ss_pred EEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEE
Confidence 45566667898 88999999999999999999875 2245678999999999999999999999877 5
Q ss_pred EEEEEec
Q 012759 447 LHLVLRL 453 (457)
Q Consensus 447 i~l~~r~ 453 (457)
+||++|.
T Consensus 83 mHlvvrp 89 (111)
T PF13881_consen 83 MHLVVRP 89 (111)
T ss_dssp EEEEE-S
T ss_pred EEEEecC
Confidence 6777664
No 87
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.46 E-value=5.8e-07 Score=70.33 Aligned_cols=70 Identities=26% Similarity=0.490 Sum_probs=55.8
Q ss_pred EEEEEccCC--cEEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEec-C------c-ccCCCCcccccccccCCcceEEE
Q 012759 78 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-G------K-QLEDGRTLADYNIQKESTLHLVL 147 (457)
Q Consensus 78 ~i~vk~~~g--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~-g------~-~L~d~~tl~~y~i~~~s~i~l~~ 147 (457)
.|+|..... ......++.+.||++||.+++...|+|++.|+|.+. . . ..+|..+|.+|++.+|.+||+.-
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D 82 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVD 82 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEe
Confidence 455654433 488899999999999999999999999999999876 1 1 23578999999999999998864
No 88
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=2.8e-07 Score=97.88 Aligned_cols=73 Identities=34% Similarity=0.592 Sum_probs=69.9
Q ss_pred eeeEeeccCceEEEeecCCChHHHHHHHHhhhhCCCCCceEEEECCeecCCCCCccccCCCcCcEEEEEEEecC
Q 012759 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (457)
Q Consensus 154 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~y~I~~~~~i~l~~~~~~ 227 (457)
.|.||+++.+..++.+...+||.++|..|..+.+|+.+.||+||.||.|.|++++++|+| +|.+|||+.|++.
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp 76 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPP 76 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCC
Confidence 378999999999999999999999999999999999999999999999999999999999 9999999999654
No 89
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=4.9e-07 Score=96.13 Aligned_cols=74 Identities=34% Similarity=0.579 Sum_probs=69.7
Q ss_pred eeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 382 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
.+.||+++.+++++.+...+||.+||..|.++.+|+.+.||++|+|+.|.|++++.+||| +|-+|||+-|-..|
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp~ 77 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPPQ 77 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCCC
Confidence 478999999999999999999999999999999999999999999999999999999999 99999999885433
No 90
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.34 E-value=1.3e-06 Score=66.65 Aligned_cols=53 Identities=28% Similarity=0.359 Sum_probs=47.7
Q ss_pred cCCchHHHHHHHHhhhcC-CCCCCeEEE--ECCeEcCCCCcccccCCCCCCEEEEE
Q 012759 398 ESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 398 ~~~~tV~~lK~~i~~~~g-ip~~~q~l~--~~g~~L~d~~tL~~~~I~~~~~i~l~ 450 (457)
+++.||++||..|++..+ ++++.|||. +.|+.|.|+.+|.+||+.+|++|++.
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyvK 75 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYVR 75 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEEe
Confidence 588999999999999875 589999996 78999999999999999999999873
No 91
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.28 E-value=2.5e-06 Score=61.91 Aligned_cols=70 Identities=27% Similarity=0.372 Sum_probs=61.5
Q ss_pred eEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEecC-----cccCCCCcccccccccCCcceEEE
Q 012759 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-----KQLEDGRTLADYNIQKESTLHLVL 147 (457)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g-----~~L~d~~tl~~y~i~~~s~i~l~~ 147 (457)
++|+|+...+....+.|+|..+|..+|++|....|++- .|+|.|.. ..|.+..+|++|||-.+-.|.|.-
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lle 75 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLE 75 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEe
Confidence 47899999999999999999999999999999999988 99999862 447899999999998777776654
No 92
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.18 E-value=3.5e-06 Score=64.21 Aligned_cols=52 Identities=29% Similarity=0.379 Sum_probs=46.5
Q ss_pred cCCCCHHHHHHHHhhhhC-CCCCCeEEE--ecCcccCCCCcccccccccCCcceE
Q 012759 94 ESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL 145 (457)
Q Consensus 94 ~~~~tV~~lK~~i~~~~g-ip~~~q~L~--~~g~~L~d~~tl~~y~i~~~s~i~l 145 (457)
+++.||.+||+.|+...+ +++++|+|. +.|+.|.|+.+|++||+.+|++|++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 478899999999998875 589999995 7899999999999999999998765
No 93
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=2.8e-06 Score=83.63 Aligned_cols=70 Identities=24% Similarity=0.424 Sum_probs=65.7
Q ss_pred eeeEEEeeCCcEEEEE-eecCccHHHHHHHhhhhcCCCCCCceEEecCeeccCCCcccccccccCceEEEEE
Q 012759 305 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 375 (457)
Q Consensus 305 ~~i~i~~~~g~~~~l~-v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~l~l~~ 375 (457)
+++.|| |.|+.|.++ ++.++|+..+|+++...|||||++|+++.+|+.+.|+..+.++.|+++.++++.-
T Consensus 4 ~~v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmG 74 (473)
T KOG1872|consen 4 DTVIVK-WGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMG 74 (473)
T ss_pred ceEeee-ecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeec
Confidence 457776 999999988 9999999999999999999999999999999999999999999999999999974
No 94
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.16 E-value=9.4e-06 Score=58.37 Aligned_cols=63 Identities=46% Similarity=0.697 Sum_probs=59.2
Q ss_pred CCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEE
Q 012759 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 389 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~ 451 (457)
.|....+.++++.|+.++|..++++.|++++.+.|+++|..+.+...+.++++.+++.|++..
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 677889999999999999999999999999999999999999999988999999999999864
No 95
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=1.4e-06 Score=61.06 Aligned_cols=69 Identities=26% Similarity=0.398 Sum_probs=63.5
Q ss_pred eeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEE
Q 012759 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 382 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~ 450 (457)
++.+.+.-|+...+.+.+++||+++|..|++.+|-.++..+|--|+..+.|.-+|++|.|.+|..+.+.
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence 455667779999999999999999999999999999999999999999999999999999999988764
No 96
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=1.7e-05 Score=73.77 Aligned_cols=70 Identities=30% Similarity=0.599 Sum_probs=60.8
Q ss_pred eeeEEEcC---CCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEE
Q 012759 381 MQIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 381 ~~i~v~~~---~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~ 450 (457)
|.++|+.. ....+.++|+.++.|.+||+.++.+.|+|+++.+++|.|++|.|+.|+..|.+...|.+++.
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~ 73 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIM 73 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhh
Confidence 34556543 33457889999999999999999999999999999999999999999999999988888865
No 97
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=97.88 E-value=4e-05 Score=54.95 Aligned_cols=65 Identities=45% Similarity=0.653 Sum_probs=59.6
Q ss_pred cCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEE
Q 012759 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (457)
Q Consensus 7 ~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~ 71 (457)
..+|....+.+.+.+|+.++|+++.++.|++++.|.|+++|..+.+...+.+|.+..++++++..
T Consensus 4 ~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 4 LNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred ecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 34788999999999999999999999999999999999999999998888899999999988753
No 98
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=1.8e-05 Score=59.52 Aligned_cols=78 Identities=17% Similarity=0.359 Sum_probs=72.8
Q ss_pred ceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 012759 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG~ 457 (457)
.+.+.|...+|....+++..+++...|....+.+.|-..+..|+.|+|+.++.++|-+++++++++.|.++....||+
T Consensus 24 hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG~ 101 (103)
T COG5227 24 HINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGGA 101 (103)
T ss_pred ccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcCc
Confidence 355667778888999999999999999999999999999999999999999999999999999999999999999995
No 99
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=97.85 E-value=2.9e-05 Score=59.31 Aligned_cols=69 Identities=29% Similarity=0.434 Sum_probs=43.7
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeec---cEEc--cCCCcccccccccccceeEE
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQL--EDGRTLADYNIQKESTLHLV 70 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~---g~~L--~~~~tl~~y~i~~~sti~l~ 70 (457)
|-|=|+..+| ++.+++++++|+.+++++|++..++|.+.|.|+.+ ...| .++.+++++++.+|+-++|.
T Consensus 5 milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 5 MILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp -EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred EEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 4466778888 88889999999999999999999999999888663 2345 45789999999999988763
No 100
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=2.8e-05 Score=72.40 Aligned_cols=63 Identities=33% Similarity=0.651 Sum_probs=57.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEecCcccCCCCcccccccccCCcceEE-EEe
Q 012759 87 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV-LRL 149 (457)
Q Consensus 87 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~-~~~ 149 (457)
..++++|+.+.+|.+||+-++...|+|+++.+++|+||+|.|+.++..+.+..-|.+|++ +|+
T Consensus 14 h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP 77 (446)
T KOG0006|consen 14 HGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRP 77 (446)
T ss_pred CceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhccCc
Confidence 357888999999999999999999999999999999999999999999999999999887 444
No 101
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.73 E-value=3.3e-05 Score=58.91 Aligned_cols=51 Identities=31% Similarity=0.423 Sum_probs=44.8
Q ss_pred EEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEE-CC-eEcCCCCcccccCCC
Q 012759 392 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AG-KQLEDGRTLADYNIQ 442 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~-~g-~~L~d~~tL~~~~I~ 442 (457)
++-++..++.||.+||.+++....-|+++|+|+. .. ..|+|.+||++||..
T Consensus 13 tif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gft 65 (110)
T KOG4495|consen 13 TIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFT 65 (110)
T ss_pred eEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhcccc
Confidence 4667899999999999999999999999999987 33 577899999999654
No 102
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=97.68 E-value=0.00022 Score=61.22 Aligned_cols=76 Identities=30% Similarity=0.523 Sum_probs=60.5
Q ss_pred eeeEEEcCCC----CEEEEEecCCchHHHHHHHHhhhcCCCCCCe-EEEE-CCeEc--CCCCcccccCCCCC----CEEE
Q 012759 381 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIF-AGKQL--EDGRTLADYNIQKE----STLH 448 (457)
Q Consensus 381 ~~i~v~~~~g----~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q-~l~~-~g~~L--~d~~tL~~~~I~~~----~~i~ 448 (457)
|+|+|.+.+| .++.+.+++++||.+|+..|.+..++|...| .|++ .++.| .++..+..+.-.+. -+++
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 5799999999 5889999999999999999999999999985 4555 35555 34555666554333 4789
Q ss_pred EEEecCCC
Q 012759 449 LVLRLRGG 456 (457)
Q Consensus 449 l~~r~~GG 456 (457)
+..|++||
T Consensus 81 l~~rl~GG 88 (162)
T PF13019_consen 81 LSLRLRGG 88 (162)
T ss_pred EEEeccCC
Confidence 99999998
No 103
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=97.55 E-value=0.00025 Score=51.60 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=47.4
Q ss_pred ccCCceEEEEeeCCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEE
Q 012759 235 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 297 (457)
Q Consensus 235 ~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l 297 (457)
..++++.++.+.++.++.++-++.+.++|++++++.|.|+++.++-+.+++.-|+.+++.+.|
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 568899999999999999999999999999999999999999999999999999999998754
No 104
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00086 Score=52.19 Aligned_cols=76 Identities=17% Similarity=0.448 Sum_probs=67.9
Q ss_pred eeEEEEccCCceEEEEeeCCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEEEeecCc
Q 012759 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304 (457)
Q Consensus 229 ~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~~~~~~ 304 (457)
+++.|+..++.++.+.+..+.....|...-|++.|++.+..++.|+|+.+.+.+|-.+.+..+++.|.++..+.++
T Consensus 21 i~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG 96 (99)
T KOG1769|consen 21 INLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGG 96 (99)
T ss_pred EEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccC
Confidence 3455677778899999999999999999999999999999999999999999999999999999999887655443
No 105
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.31 E-value=0.00036 Score=53.35 Aligned_cols=61 Identities=30% Similarity=0.442 Sum_probs=52.8
Q ss_pred CeEEEEcCCC-cEEEEEecCCCcHHHHHHHHhhhcCCCCccceEee-cc-EEccCCCccccccc
Q 012759 1 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AG-KQLEDGRTLADYNI 61 (457)
Q Consensus 1 ~~i~~~~~~g-~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~-~g-~~L~~~~tl~~y~i 61 (457)
|++|++.-.- .++.+..++|.||.++|.++..-..=|++.|+|+. +- ..|+|++||.|++.
T Consensus 1 ~~~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gf 64 (110)
T KOG4495|consen 1 MDVFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGF 64 (110)
T ss_pred CceeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccc
Confidence 6788887554 46779999999999999999999999999999998 33 57899999999965
No 106
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00016 Score=50.87 Aligned_cols=68 Identities=26% Similarity=0.409 Sum_probs=60.1
Q ss_pred eEEEEccCCceEEEEeeCCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEE
Q 012759 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 297 (457)
Q Consensus 230 ~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l 297 (457)
.+.+...-|+++++..++.|||+++|..|....|-.++...|..++..+.|.-+|++|.|.+|-.+.|
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lel 70 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLEL 70 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEE
Confidence 34455566999999999999999999999999999999999988888999999999999999877654
No 107
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=97.22 E-value=0.0011 Score=48.15 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=47.2
Q ss_pred cCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEE
Q 012759 387 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 449 (457)
Q Consensus 387 ~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l 449 (457)
..+++...+.|.|++++.++-+..+.++|++++.-.|.|+++.|+-+.++...|+.+|+.+.|
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 456888999999999999999999999999999999999999999999999999999999875
No 108
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.15 E-value=0.0012 Score=50.46 Aligned_cols=68 Identities=21% Similarity=0.421 Sum_probs=47.9
Q ss_pred eeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCe----EEE---ECCeEcCCCCcccccCCCCCCEEEE
Q 012759 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ----RLI---FAGKQLEDGRTLADYNIQKESTLHL 449 (457)
Q Consensus 382 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q----~l~---~~g~~L~d~~tL~~~~I~~~~~i~l 449 (457)
.|.|...+|+.+.+.++.+.+|++|...+.+..+.+.... .|. -+|..|.++.||+++||.+|+++.+
T Consensus 4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 4666665578899999999999999999999988744332 243 3699999999999999999999986
No 109
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.0017 Score=64.38 Aligned_cols=70 Identities=24% Similarity=0.424 Sum_probs=62.6
Q ss_pred eeeEEEcCCCCEEEEE-ecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEE
Q 012759 381 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~-v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~ 451 (457)
..|.|+ ..|+.+.++ ++.++|+..||+++.+.+|+||+.|++...|..+.|+--+...+|+++.+|.+..
T Consensus 4 ~~v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmG 74 (473)
T KOG1872|consen 4 DTVIVK-WGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMG 74 (473)
T ss_pred ceEeee-ecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeec
Confidence 345555 467889888 9999999999999999999999999999999999999889999999999998754
No 110
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=96.79 E-value=0.0099 Score=45.65 Aligned_cols=72 Identities=22% Similarity=0.325 Sum_probs=61.1
Q ss_pred CceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCC-eEEE--ECCeEcCCC--CcccccCCCCCCEEEEE
Q 012759 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FAGKQLEDG--RTLADYNIQKESTLHLV 450 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~-q~l~--~~g~~L~d~--~tL~~~~I~~~~~i~l~ 450 (457)
....|-||.++|+...-...+++||.+|...|......+... +.|. |-.+.+.++ .||+++|+.+.++|.|.
T Consensus 5 ~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 5 DVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp SEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred CEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 346788999999999999999999999999999998777765 7775 567788644 59999999999999874
No 111
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=96.79 E-value=0.0057 Score=52.63 Aligned_cols=75 Identities=29% Similarity=0.505 Sum_probs=54.4
Q ss_pred CeEEEEcCCC----cEEEEEecCCCcHHHHHHHHhhhcCCCCccc-eEeec-cEEcc--CCCccccccccccc----cee
Q 012759 1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFA-GKQLE--DGRTLADYNIQKES----TLH 68 (457)
Q Consensus 1 ~~i~~~~~~g----~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q-~l~~~-g~~L~--~~~tl~~y~i~~~s----ti~ 68 (457)
|+|||.++.| .++.+.+.++.||.+++.+|.+..++|...| .|.+. ++.|. ++..+..+.-...+ +++
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 7999999999 6999999999999999999999999998874 45554 55663 34445555433322 345
Q ss_pred EEEEecC
Q 012759 69 LVLRLRG 75 (457)
Q Consensus 69 l~~~~~~ 75 (457)
+..++.+
T Consensus 81 l~~rl~G 87 (162)
T PF13019_consen 81 LSLRLRG 87 (162)
T ss_pred EEEeccC
Confidence 5545443
No 112
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=96.54 E-value=0.0074 Score=46.05 Aligned_cols=68 Identities=24% Similarity=0.405 Sum_probs=48.7
Q ss_pred eEEEEccCCceEEEEeeCCccHHHHHHHHhhhcCCCCC------CeEEE-eCCcccCCCccccccccCCCCeEEE
Q 012759 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD------QQRLI-FAGKQLEDGRTLADYNIQKESTLHL 297 (457)
Q Consensus 230 ~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~------~q~L~-~~g~~L~d~~tl~~~~i~~~~tl~l 297 (457)
.|+|...+|+.+.+.+..+-+|++|...+.+..+.+.. ...|. -+|..|++++||++++|.+|+.|+|
T Consensus 4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 45555555789999999999999999999998886332 35666 5788999999999999999999876
No 113
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.0038 Score=55.26 Aligned_cols=62 Identities=29% Similarity=0.446 Sum_probs=56.8
Q ss_pred cCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEecCcccCCCCcccccccccCCcceE
Q 012759 84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 145 (457)
Q Consensus 84 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l 145 (457)
.+++.+.+.+...+|+.++|.+++..+|+.+..|+++|+|+.|-|...|.+|+|..++...+
T Consensus 154 tT~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvl 215 (231)
T KOG0013|consen 154 TTREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVL 215 (231)
T ss_pred hhhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEE
Confidence 46788999999999999999999999999999999999999999999999999999965443
No 114
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=96.26 E-value=0.036 Score=42.47 Aligned_cols=72 Identities=22% Similarity=0.325 Sum_probs=59.3
Q ss_pred cceeeeEeeccCceEEEeecCCChHHHHHHHHhhhhCCCCCc-eEEE--ECCeecCCC--CCccccCCCcCcEEEEE
Q 012759 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FAGKQLEDG--RTLADYNIQKESTLHLV 222 (457)
Q Consensus 151 ~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~-q~L~--~~g~~L~d~--~tL~~y~I~~~~~i~l~ 222 (457)
....|.|+.++|+.+.-...+++||.+|...|......+... ..|+ |-.+.+.+. .||++.|+.+++++++-
T Consensus 5 ~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 5 DVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp SEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred CEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 346778889999999999999999999999999887766654 7775 556777554 69999999999998763
No 115
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=96.25 E-value=0.029 Score=42.84 Aligned_cols=71 Identities=21% Similarity=0.240 Sum_probs=58.6
Q ss_pred CceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEE--ECCeEcCC---CCcccccCCCCCCEEEE
Q 012759 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 449 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~--~~g~~L~d---~~tL~~~~I~~~~~i~l 449 (457)
+...|-||.++|+...-..++++||++|.+.|....+.+...+.|. |-.+.+.+ +.||.++|+.+.++|.|
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 3467889999999999999999999999999977777777777775 45667764 46999999999888876
No 116
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=96.20 E-value=0.011 Score=46.83 Aligned_cols=57 Identities=21% Similarity=0.339 Sum_probs=42.6
Q ss_pred EEEEccC-CcEEEEEEc--CCCCHHHHHHHHhhhhC--CCCCCeEEEecCcccCCCCccccc
Q 012759 79 IFVKTLT-GKTITLEVE--SSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADY 135 (457)
Q Consensus 79 i~vk~~~-g~~~~l~v~--~~~tV~~lK~~i~~~~g--ip~~~q~L~~~g~~L~d~~tl~~y 135 (457)
|.|+..+ -....+++. .+.||..||..|.+..+ ..-.+++|+|+|+.|.|+..|+.-
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 3444433 233667776 78999999999999873 445668999999999998877654
No 117
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.04 E-value=0.041 Score=41.92 Aligned_cols=69 Identities=22% Similarity=0.293 Sum_probs=55.1
Q ss_pred CceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCC-CCCCeEEE--ECCeEcCC-CCcccccCCCCCCEE
Q 012759 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLI--FAGKQLED-GRTLADYNIQKESTL 447 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gi-p~~~q~l~--~~g~~L~d-~~tL~~~~I~~~~~i 447 (457)
+...|-||..+|+.....++.++||++|.+-|....+- ....+.|. |-.+.|.| +.||.+.|+.+.+.+
T Consensus 3 p~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~ 75 (79)
T cd01770 3 PTTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV 75 (79)
T ss_pred CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence 45678999999999999999999999999999987643 23556665 66788864 679999999865443
No 118
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.92 E-value=0.013 Score=51.95 Aligned_cols=62 Identities=29% Similarity=0.445 Sum_probs=55.5
Q ss_pred CCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEE
Q 012759 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 389 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~ 450 (457)
.++.+-+.+...+|+.++|.++.+..|+.+..|+|+|.|..|.|...|..|+|+.|.--.+-
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlq 216 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQ 216 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEE
Confidence 35567888999999999999999999999999999999999999999999999999544443
No 119
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=95.86 E-value=0.067 Score=40.48 Aligned_cols=68 Identities=16% Similarity=0.286 Sum_probs=52.9
Q ss_pred ceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEE--ECCeEcCC---CCcccccCCCCCCEEEE
Q 012759 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 449 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~--~~g~~L~d---~~tL~~~~I~~~~~i~l 449 (457)
...|-||.++|+...-..+.++||++|.+-|.....- .....|. |-.+.+.+ +.||.++|+.+ +++.+
T Consensus 2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~-s~~~~ 74 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVN-EVVFQ 74 (77)
T ss_pred cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCcc-ceEEE
Confidence 4568899999999999999999999999999877543 4556665 44567754 67999999994 44444
No 120
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=95.77 E-value=0.049 Score=41.62 Aligned_cols=70 Identities=21% Similarity=0.239 Sum_probs=56.3
Q ss_pred eeeEEEeeCCcEEEEEeecCccHHHHHHHhhhhcCCCCCCceEE--ecCeeccC---CCcccccccccCceEEEE
Q 012759 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHLV 374 (457)
Q Consensus 305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L~d---~~~l~~~~i~~~~~l~l~ 374 (457)
..|.|+..+|..+.-.++.++|+++|.+-+....+.....-.|. ++.+.+.+ +.+|.+.|+-++++|.+.
T Consensus 5 ~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v~ 79 (80)
T smart00166 5 CRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVLE 79 (80)
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEEe
Confidence 36889999999999999999999999999976666555545555 66666743 589999999998888774
No 121
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=95.69 E-value=0.018 Score=52.35 Aligned_cols=69 Identities=28% Similarity=0.401 Sum_probs=51.6
Q ss_pred eeeEEEcCCC--CEEEEEecCCchHHHHHHHHhhh-cCCCCCCeEEEE----CCeEcCCCCcccccCCCCCCEEEE
Q 012759 381 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDK-EGIPPDQQRLIF----AGKQLEDGRTLADYNIQKESTLHL 449 (457)
Q Consensus 381 ~~i~v~~~~g--~~~~l~v~~~~tV~~lK~~i~~~-~gip~~~q~l~~----~g~~L~d~~tL~~~~I~~~~~i~l 449 (457)
|.|++...++ .......+..+|+.|++.++.++ ..+.+..+|+.+ .|++|-|+.+|++|+..+|.+|++
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 4566665554 22335566788999999766665 478887776655 799999999999999999987765
No 122
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=95.60 E-value=0.028 Score=44.59 Aligned_cols=49 Identities=24% Similarity=0.411 Sum_probs=38.7
Q ss_pred ceEEEeec--CCChHHHHHHHHhhhhC--CCCCceEEEECCeecCCCCCcccc
Q 012759 163 KTITLEVE--SSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADY 211 (457)
Q Consensus 163 ~~~~~~v~--~~~tV~~lK~~i~~~~g--ip~~~q~L~~~g~~L~d~~tL~~y 211 (457)
..+++++. ...||..||..|.+..+ .....+||||+|+.|.|...|+.-
T Consensus 12 pDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 12 PDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred CCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 44666666 78899999999999883 344568999999999998776653
No 123
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.44 E-value=0.13 Score=39.76 Aligned_cols=71 Identities=11% Similarity=0.156 Sum_probs=57.4
Q ss_pred CceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECC--eEcC--------CCCcccccCCCCCCEEE
Q 012759 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLE--------DGRTLADYNIQKESTLH 448 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g--~~L~--------d~~tL~~~~I~~~~~i~ 448 (457)
...+|-||.++|+...-....++||++|..-|... +-.++...|..+= +.++ .+.||.+.|+.+..+|.
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~ 81 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLF 81 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEE
Confidence 35678899999998888999999999999999764 4566778887643 6675 25699999999988887
Q ss_pred EE
Q 012759 449 LV 450 (457)
Q Consensus 449 l~ 450 (457)
|.
T Consensus 82 V~ 83 (85)
T cd01774 82 VQ 83 (85)
T ss_pred Ee
Confidence 64
No 124
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.43 E-value=0.11 Score=39.46 Aligned_cols=69 Identities=16% Similarity=0.312 Sum_probs=55.5
Q ss_pred eeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEE--ECCeEcCC---CCcccccCCCCCCEEEEE
Q 012759 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHLV 450 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~--~~g~~L~d---~~tL~~~~I~~~~~i~l~ 450 (457)
..|.||.++|+...-..+.++|++++.+.|+...+-+ ....|. |-.+.+.+ +.||.++|+.+..+|.|-
T Consensus 5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v~ 78 (79)
T cd01772 5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIVT 78 (79)
T ss_pred EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEEe
Confidence 4688899999999999999999999999999775543 445554 45677753 479999999999988763
No 125
>COG5417 Uncharacterized small protein [Function unknown]
Probab=95.33 E-value=0.12 Score=37.89 Aligned_cols=67 Identities=18% Similarity=0.245 Sum_probs=54.9
Q ss_pred eEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCC--C---CCeEEEECCeEcCCCCcccccCCCCCCEEEE
Q 012759 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP--P---DQQRLIFAGKQLEDGRTLADYNIQKESTLHL 449 (457)
Q Consensus 383 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip--~---~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l 449 (457)
+-++...|.++.+.++.-.++..|-..+.+...|. + +..+..-.++.|.++..|.+|||.+|+.+.+
T Consensus 9 vD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 9 VDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 33456679999999999999999998888776543 2 3457777899999999999999999998864
No 126
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.30 E-value=0.097 Score=39.88 Aligned_cols=68 Identities=16% Similarity=0.320 Sum_probs=55.2
Q ss_pred eeEEEeeCCcEEEEEeecCccHHHHHHHhhhhcCCCCCCceEE--ecCeeccC---CCcccccccccCceEEEE
Q 012759 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHLV 374 (457)
Q Consensus 306 ~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L~d---~~~l~~~~i~~~~~l~l~ 374 (457)
.|.|+.++|..+.-.++.++|+.++.+-|....+-+ ..-.|. |+.+.+.+ +.+|.+.|+.+..+|.+.
T Consensus 6 ~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v~ 78 (79)
T cd01772 6 RIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIVT 78 (79)
T ss_pred EEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEEe
Confidence 578899999999999999999999999999765543 323444 77787743 589999999999888874
No 127
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=95.02 E-value=0.14 Score=38.77 Aligned_cols=68 Identities=15% Similarity=0.245 Sum_probs=51.8
Q ss_pred eeeEEEeeCCcEEEEEeecCccHHHHHHHhhhhcCCCCCCceEE--ecCeecc---CCCcccccccccCceEEEE
Q 012759 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLV 374 (457)
Q Consensus 305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L~---d~~~l~~~~i~~~~~l~l~ 374 (457)
..|.|+..+|..+.-.++.++|+++|.+-|.....- ...-.|. |+.+.+. .+.+|.+.|+.+ +.+.+.
T Consensus 3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~-s~~~~~ 75 (77)
T cd01767 3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVN-EVVFQR 75 (77)
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCcc-ceEEEE
Confidence 357889999999999999999999999999876543 2333444 6667764 589999999984 555443
No 128
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.99 E-value=0.24 Score=37.82 Aligned_cols=73 Identities=16% Similarity=0.305 Sum_probs=60.6
Q ss_pred CceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEE--ECCeEcC---CCCcccccCCCCCCEEEEEEe
Q 012759 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~--~~g~~L~---d~~tL~~~~I~~~~~i~l~~r 452 (457)
+..+|.||.++|+...-....++++++|-..+.. .|.+++.+.|+ |--+.+. .+.||.+.|+.+..+|.|--|
T Consensus 4 ~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~r 81 (82)
T cd01773 4 PKARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQER 81 (82)
T ss_pred CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEecC
Confidence 4568999999999999999999999999999999 57788888876 3344553 347999999999999988654
No 129
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.70 E-value=0.26 Score=37.55 Aligned_cols=73 Identities=21% Similarity=0.281 Sum_probs=59.4
Q ss_pred CceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEE--ECCeEcC---CCCcccccCCCCCCEEEEEEe
Q 012759 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~--~~g~~L~---d~~tL~~~~I~~~~~i~l~~r 452 (457)
+..+|-|+.++|....-....++++++|..-|... |.+++..+|. |--+.+. .+.||.+.|+.+..+|.|--|
T Consensus 3 ~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Veer 80 (80)
T cd01771 3 PISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILEER 80 (80)
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEEcC
Confidence 45678899999999999999999999999999875 7777788875 3445553 346999999999999987543
No 130
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=94.69 E-value=0.34 Score=44.51 Aligned_cols=123 Identities=20% Similarity=0.286 Sum_probs=64.5
Q ss_pred cEEEEEeecCccHHHHHHHhhhhcCCCCC-CceEE----ecCe---eccCCCcccccccccCceEEEEEEe------c--
Q 012759 315 KTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI----FAGK---QLEDGRTLADYNIQKESTLHLVLRL------R-- 378 (457)
Q Consensus 315 ~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~-~q~l~----~~g~---~L~d~~~l~~~~i~~~~~l~l~~~~------~-- 378 (457)
+.+.+.++.+.||.||-+.+..+.+++.. .++|. ++++ .++.+..+... .....+++..-+ .
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~ 111 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDE 111 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhcccc
Confidence 46889999999999999999999999776 34443 3443 46778888777 222245443211 1
Q ss_pred --CceeeEEEcC-------CCCEEEEEecCCchHHHHHHHHhhhcCCCCCCe-----EEEECC-----eEcCCCC--ccc
Q 012759 379 --GGMQIFVKTL-------TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-----RLIFAG-----KQLEDGR--TLA 437 (457)
Q Consensus 379 --~~~~i~v~~~-------~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q-----~l~~~g-----~~L~d~~--tL~ 437 (457)
..+-|.|... -|-.+.+.|.+++|+.++|++|++++|++...+ .++-++ ..++|+. .|.
T Consensus 112 ~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~keF~K~Kfaiv~~~~~~~~~yl~d~~~~il~ 191 (213)
T PF14533_consen 112 SEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDKEFEKWKFAIVQNSRYSKPRYLEDDDDLILF 191 (213)
T ss_dssp --TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HHHHTT-EEEEEETTEE---EE--TT-T----
T ss_pred cccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChhhheeEEEEEEecCCcccceeccccchhhhh
Confidence 1233444321 255688899999999999999999999986554 233333 4666654 444
Q ss_pred cc
Q 012759 438 DY 439 (457)
Q Consensus 438 ~~ 439 (457)
+-
T Consensus 192 ~~ 193 (213)
T PF14533_consen 192 DE 193 (213)
T ss_dssp GG
T ss_pred hh
Confidence 44
No 131
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.62 E-value=0.15 Score=38.77 Aligned_cols=64 Identities=22% Similarity=0.310 Sum_probs=50.3
Q ss_pred eeeEEEeeCCcEEEEEeecCccHHHHHHHhhhhcCCCC-CCceEE--ecCeec-cCCCcccccccccC
Q 012759 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLI--FAGKQL-EDGRTLADYNIQKE 368 (457)
Q Consensus 305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~-~~q~l~--~~g~~L-~d~~~l~~~~i~~~ 368 (457)
-.|.|+..+|+.++..++.++||.+|.+-|....+-+. ..-.|+ |+.+.+ +++.||.+.|+.+.
T Consensus 5 t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s 72 (79)
T cd01770 5 TSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNA 72 (79)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCc
Confidence 46889999999999999999999999999998754332 223454 677766 45899999999753
No 132
>COG5417 Uncharacterized small protein [Function unknown]
Probab=94.47 E-value=0.17 Score=37.11 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=56.6
Q ss_pred ceeeEEEeeCCcEEEEEeecCccHHHHHHHhhhhcCCCCC-----CceEEecCeeccCCCcccccccccCceEEE
Q 012759 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-----QQRLIFAGKQLEDGRTLADYNIQKESTLHL 373 (457)
Q Consensus 304 ~~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~-----~q~l~~~g~~L~d~~~l~~~~i~~~~~l~l 373 (457)
.+++-.+.|+|.+|.+.++...++..+-..+.+-..|... .-+.+-++..|.++..|++|+|..|+.|.+
T Consensus 6 kVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 6 KVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 3466678999999999999999999999888876654432 233446788899999999999999998865
No 133
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=94.47 E-value=0.27 Score=37.28 Aligned_cols=59 Identities=20% Similarity=0.320 Sum_probs=42.6
Q ss_pred eEEEEeeCCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEE
Q 012759 240 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298 (457)
Q Consensus 240 ~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~ 298 (457)
.+...++-...+..||..++.+.+++.+.+.+...+..|+++++|.+.|++-+.++.+.
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQln 62 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLN 62 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEE
Confidence 35566777889999999999999999999999999988999999999999998888663
No 134
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=94.17 E-value=0.38 Score=44.20 Aligned_cols=103 Identities=20% Similarity=0.302 Sum_probs=58.1
Q ss_pred ceEEEeecCCChHHHHHHHHhhhhCCCCC---ceEE--EECCee---cCCCCCccccCCCcCcEEEEEEEec--------
Q 012759 163 KTITLEVESSDTIDNVKAKIQDKEGIPPD---QQRL--IFAGKQ---LEDGRTLADYNIQKESTLHLVLRLR-------- 226 (457)
Q Consensus 163 ~~~~~~v~~~~tV~~lK~~i~~~~gip~~---~q~L--~~~g~~---L~d~~tL~~y~I~~~~~i~l~~~~~-------- 226 (457)
+.+.+.|+.+.||.+|.++++++.+++.+ ..|+ +++++. +..+.++.+. .+...+.+-.-+.
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~ 111 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDE 111 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhcccc
Confidence 45788999999999999999999998765 3444 356654 5667777665 3333333321111
Q ss_pred --CCeeEEEEc-------cCCceEEEEeeCCccHHHHHHHHhhhcCCCCC
Q 012759 227 --GGMQIFVKT-------LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 267 (457)
Q Consensus 227 --~~~~i~V~~-------~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~ 267 (457)
+...|.|-- ..|-.+.+.|.++.|+.++|++|++++|++..
T Consensus 112 ~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~k 161 (213)
T PF14533_consen 112 SEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDK 161 (213)
T ss_dssp --TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HH
T ss_pred cccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChh
Confidence 112233322 23778889999999999999999999998654
No 135
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.15 E-value=0.4 Score=37.03 Aligned_cols=69 Identities=12% Similarity=0.164 Sum_probs=55.3
Q ss_pred CeeEEEEccCCceEEEEeeCCccHHHHHHHHhhhcCCCCCCeEEEeCC--cccC--------CCccccccccCCCCeEEE
Q 012759 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLE--------DGRTLADYNIQKESTLHL 297 (457)
Q Consensus 228 ~~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g--~~L~--------d~~tl~~~~i~~~~tl~l 297 (457)
...|.++.++|..+.-....++|+++|..-|.. .+..+..+.|+.+= +.+. .+.||.+.|+.+..+|.+
T Consensus 4 ~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V 82 (85)
T cd01774 4 TVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFV 82 (85)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEE
Confidence 356778889999999999999999999999965 45566788888753 5554 478999999998888743
No 136
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.11 E-value=0.34 Score=37.02 Aligned_cols=70 Identities=16% Similarity=0.320 Sum_probs=59.6
Q ss_pred eeeEEEeeCCcEEEEEeecCccHHHHHHHhhhhcCCCCCCceEE--ecCeec---cCCCcccccccccCceEEEEE
Q 012759 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVL 375 (457)
Q Consensus 305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L---~d~~~l~~~~i~~~~~l~l~~ 375 (457)
-.|.|+.++|+.+.-.+...+|+.+|-.-+.. .|.+++...|+ |.-+.+ +.+.||.+.|+.+..+|.+..
T Consensus 6 t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~ 80 (82)
T cd01773 6 ARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 80 (82)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEec
Confidence 36889999999999999999999999999998 57788877777 776665 446899999999999988864
No 137
>PRK06437 hypothetical protein; Provisional
Probab=93.95 E-value=0.5 Score=34.68 Aligned_cols=59 Identities=20% Similarity=0.372 Sum_probs=47.3
Q ss_pred CCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 389 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
.++...++++.+.||++|-+. .|+++....+..+|..+. .++-+++|+.|.+.--.-||
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~V~GG 67 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEVFSGG 67 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEecccCC
Confidence 345577888999999998766 488898888999999997 55567789999987777666
No 138
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.82 E-value=0.35 Score=36.87 Aligned_cols=69 Identities=20% Similarity=0.331 Sum_probs=57.6
Q ss_pred eeeEEEeeCCcEEEEEeecCccHHHHHHHhhhhcCCCCCCceEE--ecCeec---cCCCcccccccccCceEEEE
Q 012759 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLV 374 (457)
Q Consensus 305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L---~d~~~l~~~~i~~~~~l~l~ 374 (457)
..|.++.++|..+.-.+..++|+++|-.-+... |.++..-.|+ |+-+.+ +.+.+|.+.|+.+..+|.+.
T Consensus 5 ~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 5 SKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 467889999999999999999999999999875 6676666776 777766 34689999999998888775
No 139
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=93.59 E-value=0.28 Score=37.44 Aligned_cols=69 Identities=14% Similarity=0.366 Sum_probs=61.9
Q ss_pred eeEEEEccCCceEEEEeeCCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEE
Q 012759 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 297 (457)
Q Consensus 229 ~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l 297 (457)
++..|...+|.++-+.++...+...|-..-+.+.|=.-+..|+.|+|+..+.++|-.+++..+++.|..
T Consensus 25 inLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEa 93 (103)
T COG5227 25 INLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEA 93 (103)
T ss_pred cceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHH
Confidence 455566788999999999999999999999999998889999999999999999999999998887644
No 140
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=92.69 E-value=0.43 Score=36.17 Aligned_cols=61 Identities=20% Similarity=0.328 Sum_probs=45.1
Q ss_pred EEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEe
Q 012759 392 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r 452 (457)
.+...++-..++..||..++.+.+++.+.-.++..+..|+++++|-+-+|+-.-++.+++-
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQ 64 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQ 64 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEE
Confidence 3455678889999999999999999999999999998899999999999999889988765
No 141
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=92.58 E-value=0.38 Score=42.80 Aligned_cols=58 Identities=19% Similarity=0.349 Sum_probs=48.6
Q ss_pred EEEEecCCchHHHHHHHHhhhcCCCCCCeEEE-ECC-----eEcC-CCCcccccCCCCCCEEEEE
Q 012759 393 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 393 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~-~~g-----~~L~-d~~tL~~~~I~~~~~i~l~ 450 (457)
..-+.+++.||+++|.+++-.+|.+++.+.|. |.| -.|. ++..|..|+..+|..||++
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihvi 79 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVI 79 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEE
Confidence 44567899999999999999999999999885 444 3565 5568999999999999875
No 142
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=92.49 E-value=0.22 Score=37.54 Aligned_cols=56 Identities=23% Similarity=0.331 Sum_probs=47.2
Q ss_pred ecCCchHHHHHHHHhhhcC-CCCCCeEEEECCeEcCCCCccccc-CCCCCCEEEEEEe
Q 012759 397 VESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADY-NIQKESTLHLVLR 452 (457)
Q Consensus 397 v~~~~tV~~lK~~i~~~~g-ip~~~q~l~~~g~~L~d~~tL~~~-~I~~~~~i~l~~r 452 (457)
|+++++|.++++.+..... -.-.+..|.++|+.|++...|++. |+++|+++.+...
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~ 58 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEE 58 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEec
Confidence 5789999999999998854 566778899999999988888877 4888999988754
No 143
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=92.45 E-value=1 Score=42.43 Aligned_cols=107 Identities=17% Similarity=0.346 Sum_probs=73.5
Q ss_pred EEeecCccHHHHHHHhhhhcCCCCCCceEEec----C--eeccCCCcccccccccCceEEEEEEecC-------------
Q 012759 319 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----G--KQLEDGRTLADYNIQKESTLHLVLRLRG------------- 379 (457)
Q Consensus 319 l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~----g--~~L~d~~~l~~~~i~~~~~l~l~~~~~~------------- 379 (457)
+-|+.+++|.+|-..|.++.|+|++..-++|. + ..++.+.++....+..|+.|-+......
T Consensus 89 ~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~~~~~~~~~~~~~~v~~ 168 (249)
T PF12436_consen 89 VYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRAPSEDLDKSSRYPDVKE 168 (249)
T ss_dssp EEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE--GG--GGGSSS-SHHH
T ss_pred EEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEeccccccccccCCCCHHH
Confidence 67899999999999999999999997666653 2 2478999999999999999998864321
Q ss_pred -------ceeeEEEc---CCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEE
Q 012759 380 -------GMQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 425 (457)
Q Consensus 380 -------~~~i~v~~---~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~ 425 (457)
.+.|.++. ..+..+.+.++..+|-.+|-+.|++..|++|+..||+-
T Consensus 169 Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~~ 224 (249)
T PF12436_consen 169 YYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFFT 224 (249)
T ss_dssp HHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE-
T ss_pred HHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE
Confidence 14455543 33457999999999999999999999999999998863
No 144
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=92.13 E-value=0.67 Score=35.03 Aligned_cols=60 Identities=13% Similarity=0.228 Sum_probs=47.6
Q ss_pred EEEEEecCCchHHHHHHHHhhhcCC----CCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 392 TITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~gi----p~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
...++++.+.||.+|.+.+....+- ......+..||+.... +.-+++|+.|.+.-+..||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~-----~~~l~~gD~v~i~ppv~GG 80 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRL-----DTPLKDGDEVAIIPPVSGG 80 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCC-----CcccCCCCEEEEeCCCCCC
Confidence 3567788899999999999987642 3446677889999873 4557889999999999888
No 145
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=91.90 E-value=1.7 Score=32.11 Aligned_cols=66 Identities=12% Similarity=0.195 Sum_probs=49.8
Q ss_pred eeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
|+|.+.... ....++++++.||.+|-+.+ ++++..-.+..||..+.. +.-+++|+.|.+.-...||
T Consensus 5 m~v~vng~~-~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~~V~GG 70 (70)
T PRK08364 5 IRVKVIGRG-IEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE-----DDPVKDGDYVEVIPVVSGG 70 (70)
T ss_pred EEEEEeccc-cceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC-----CcCcCCCCEEEEEccccCC
Confidence 566664332 24678889999999998776 677777788899999854 4557779999988777776
No 146
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=91.72 E-value=0.97 Score=34.14 Aligned_cols=68 Identities=24% Similarity=0.287 Sum_probs=50.7
Q ss_pred EEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCC-eEEEE----C--CeEcCCCCcccccCCC--CCCEEEEEEe
Q 012759 385 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF----A--GKQLEDGRTLADYNIQ--KESTLHLVLR 452 (457)
Q Consensus 385 v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~-q~l~~----~--g~~L~d~~tL~~~~I~--~~~~i~l~~r 452 (457)
|+.++|...+++|++++|+.+|-..|++..|+.... +-|.+ + ..-|+.+++|.++... ...++++.+|
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~frvk 77 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYFRVK 77 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEEEES
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEEEEE
Confidence 456788899999999999999999999999986443 46777 2 2356788899999887 3444444443
No 147
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=91.32 E-value=1.4 Score=41.65 Aligned_cols=122 Identities=17% Similarity=0.362 Sum_probs=78.0
Q ss_pred eeeeEeecc--CceE----EEeecCCChHHHHHHHHhhhhCCCCCceEEEEC----C--eecCCCCCccccCCCcCcEEE
Q 012759 153 MQIFVKTLT--GKTI----TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----G--KQLEDGRTLADYNIQKESTLH 220 (457)
Q Consensus 153 ~~i~vk~~~--g~~~----~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~----g--~~L~d~~tL~~y~I~~~~~i~ 220 (457)
+.|++|-.+ .+++ .+.|+.+++|+++-..|.+..|+|++..-++|. + ..++...|+....+.+|+.|.
T Consensus 69 iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~ 148 (249)
T PF12436_consen 69 ILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIIC 148 (249)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEE
T ss_pred EEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEE
Confidence 455566543 2332 356889999999999999999999988777764 2 346788999999999999997
Q ss_pred EEEEecC--------------------CeeEEEEc---cCCceEEEEeeCCccHHHHHHHHhhhcCCCCCCeEEEeC
Q 012759 221 LVLRLRG--------------------GMQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 274 (457)
Q Consensus 221 l~~~~~~--------------------~~~i~V~~---~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~ 274 (457)
+-..... .+.|.+.. ..+..+++.+....|-.+|-+.|.++.+++|..-+|.-.
T Consensus 149 fQ~~~~~~~~~~~~~~~v~~Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~~~ 225 (249)
T PF12436_consen 149 FQRAPSEDLDKSSRYPDVKEYYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFFTV 225 (249)
T ss_dssp EEE--GG--GGGSSS-SHHHHHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE--
T ss_pred EEeccccccccccCCCCHHHHHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEEe
Confidence 6554321 13344333 334589999999999999999999999999998777653
No 148
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=90.98 E-value=0.44 Score=35.94 Aligned_cols=57 Identities=23% Similarity=0.312 Sum_probs=45.8
Q ss_pred ecCCChHHHHHHHHhhhhC-CCCCceEEEECCeecCCCCCcccc-CCCcCcEEEEEEEe
Q 012759 169 VESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADY-NIQKESTLHLVLRL 225 (457)
Q Consensus 169 v~~~~tV~~lK~~i~~~~g-ip~~~q~L~~~g~~L~d~~tL~~y-~I~~~~~i~l~~~~ 225 (457)
|.+.++|.+++..+..... ..-..+.|.++|..|++...+++. |+.+++++.++.++
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~p 59 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEEP 59 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEecC
Confidence 5678999999999987643 455667889999999999888887 58888888877543
No 149
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=90.70 E-value=0.36 Score=44.25 Aligned_cols=69 Identities=29% Similarity=0.374 Sum_probs=48.6
Q ss_pred eEEEEEccCC-cEEE-EEEcCCCCHHHHHHHHhhh-hCCCCCCeEE--E--ecCcccCCCCcccccccccCCcceE
Q 012759 77 MQIFVKTLTG-KTIT-LEVESSDTIDNVKAKIQDK-EGIPPDQQRL--I--FAGKQLEDGRTLADYNIQKESTLHL 145 (457)
Q Consensus 77 ~~i~vk~~~g-~~~~-l~v~~~~tV~~lK~~i~~~-~gip~~~q~L--~--~~g~~L~d~~tl~~y~i~~~s~i~l 145 (457)
|.|++...++ -... ...+..+|+.++++++..+ ..+-+..+++ - -.|+.|-|+.+|++|+..+++++.+
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 4566655544 2233 5567788999999877765 4566645443 3 4699999999999999988876655
No 150
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=90.34 E-value=0.86 Score=35.15 Aligned_cols=43 Identities=14% Similarity=0.286 Sum_probs=37.9
Q ss_pred eEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCC---CCeEEEE
Q 012759 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLIF 425 (457)
Q Consensus 383 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~---~~q~l~~ 425 (457)
..++++.|+++-+.+.|+..+.+|++.|+++.|+.. ....|.|
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 356788999999999999999999999999999997 4667776
No 151
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=90.24 E-value=1.7 Score=31.53 Aligned_cols=60 Identities=15% Similarity=0.325 Sum_probs=43.5
Q ss_pred CCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 389 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
+|+.+.+ + ..|+.+|...+ ++++....+-.|+..+.. ..-++.-+++|+.|.+.-..-||
T Consensus 6 Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~~-~~~~~~~L~dgD~Ieiv~~V~GG 65 (65)
T PRK06488 6 NGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVHK-EARAQFVLHEGDRIEILSPMQGG 65 (65)
T ss_pred CCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcCH-HHcCccccCCCCEEEEEEeccCC
Confidence 3555555 3 46899998765 677766677888888863 23455667889999998888887
No 152
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=90.18 E-value=1.2 Score=33.93 Aligned_cols=61 Identities=16% Similarity=0.255 Sum_probs=44.0
Q ss_pred CEEEEEecCCchHHHHHHHHhhhc-CCCC--CCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 391 KTITLEVESSDTIDNVKAKIQDKE-GIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 391 ~~~~l~v~~~~tV~~lK~~i~~~~-gip~--~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
....++++.+.|+++|.+.+.... ++.. ....+..||+...++ .-+++|+.|.+.-+..||
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~~-----~~l~dgDeVai~PpvsGG 82 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTES-----AALKDGDELAIIPPISGG 82 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCCC-----cCcCCCCEEEEeCCCCCC
Confidence 457788888999999999997765 1111 122466788876543 346779999999888887
No 153
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=89.54 E-value=1.4 Score=33.30 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=34.6
Q ss_pred EEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCe
Q 012759 392 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 428 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~ 428 (457)
++.+.|+++.+..+|..+|.++.++|+++..|.|...
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde 48 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE 48 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence 8999999999999999999999999999999999644
No 154
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=89.49 E-value=3 Score=31.41 Aligned_cols=65 Identities=23% Similarity=0.316 Sum_probs=47.9
Q ss_pred EEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCcc-ceEee----c--cEEccCCCcccccccccccceeE
Q 012759 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF----A--GKQLEDGRTLADYNIQKESTLHL 69 (457)
Q Consensus 5 ~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~-q~l~~----~--g~~L~~~~tl~~y~i~~~sti~l 69 (457)
|..++|...+++|+++.|+.++=++|.++.|+.-.. .-|.+ + ..-|+.++++.++.........+
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l 72 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTL 72 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEE
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEE
Confidence 567899999999999999999999999999997544 45555 1 22367777888776663444333
No 155
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=89.31 E-value=0.11 Score=49.42 Aligned_cols=57 Identities=21% Similarity=0.454 Sum_probs=0.0
Q ss_pred CchHHHHHHHHhh----------hcCCCCCCeE-----EEECCeEcCCCCcccccCCC-------CCCEEEEEEecCCC
Q 012759 400 SDTIDNVKAKIQD----------KEGIPPDQQR-----LIFAGKQLEDGRTLADYNIQ-------KESTLHLVLRLRGG 456 (457)
Q Consensus 400 ~~tV~~lK~~i~~----------~~gip~~~q~-----l~~~g~~L~d~~tL~~~~I~-------~~~~i~l~~r~~GG 456 (457)
+++|.++|..+++ .+++|.+..+ |.|+-+++.|++||.+..=. .+.++.+.+-..||
T Consensus 103 ttSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l~~~~~~l~~~~~~vE~gvMVlGG 181 (309)
T PF12754_consen 103 TTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVLADSESRLLSGGKEVEFGVMVLGG 181 (309)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred cCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHHhcccchhccCCceEEEEEEEECC
Confidence 6899999999999 8999999999 99999999999998887544 47788888878887
No 156
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=88.23 E-value=1.4 Score=33.96 Aligned_cols=43 Identities=14% Similarity=0.286 Sum_probs=37.4
Q ss_pred EEEEccCCceEEEEeeCCccHHHHHHHHhhhcCCCC---CCeEEEe
Q 012759 231 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLIF 273 (457)
Q Consensus 231 i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~---~~q~L~~ 273 (457)
...+.+.|+++++.+.++..+.+|++.|.+++|+.. ....|.|
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 346788999999999999999999999999999876 4677777
No 157
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=88.13 E-value=2.9 Score=29.48 Aligned_cols=55 Identities=20% Similarity=0.303 Sum_probs=41.4
Q ss_pred eeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEE
Q 012759 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~ 451 (457)
|+|++. | ..+++..+.|..+||.++.. +.=.|+++|-+..++..|. +|+.|.+.-
T Consensus 1 M~I~vN---~--k~~~~~~~~tl~~lr~~~k~------~~DI~I~NGF~~~~d~~L~-----e~D~v~~Ik 55 (57)
T PF14453_consen 1 MKIKVN---E--KEIETEENTTLFELRKESKP------DADIVILNGFPTKEDIELK-----EGDEVFLIK 55 (57)
T ss_pred CEEEEC---C--EEEEcCCCcCHHHHHHhhCC------CCCEEEEcCcccCCccccC-----CCCEEEEEe
Confidence 556554 3 56788999999999999765 3448899999998876665 478887654
No 158
>smart00455 RBD Raf-like Ras-binding domain.
Probab=87.89 E-value=1.8 Score=32.04 Aligned_cols=49 Identities=22% Similarity=0.302 Sum_probs=42.0
Q ss_pred EEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECC--eEcCC
Q 012759 384 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLED 432 (457)
Q Consensus 384 ~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g--~~L~d 432 (457)
.+..++|+...+.+.|+.|+.|+-+.+.++.|+.++.-.++..| ++|+-
T Consensus 3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g~~k~ldl 53 (70)
T smart00455 3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRGEKKPLDL 53 (70)
T ss_pred EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCcceec
Confidence 34567899999999999999999999999999999999888844 46653
No 159
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=87.89 E-value=1.4 Score=32.81 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=40.4
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeecc
Q 012759 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (457)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g 47 (457)
+.|-.+||+.-.+.|.|+.||.++=+++-++.|+.++.-.+++.|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 567789999999999999999999999999999999887777654
No 160
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=87.81 E-value=1.4 Score=32.72 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=39.5
Q ss_pred eEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECC
Q 012759 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 427 (457)
Q Consensus 383 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g 427 (457)
+.|..++|+...+.|.|++|+.|+-+.+.++-|+.++.-.++..|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 345678899999999999999999999999999999988877653
No 161
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=87.63 E-value=0.27 Score=47.00 Aligned_cols=72 Identities=25% Similarity=0.374 Sum_probs=53.3
Q ss_pred ceEEEEEccCC--cEEEEEEcCCCCHHHHHHHHhhhhC-C-CCCCeEEEecCcccCCCCccccccccc--CCcceEEE
Q 012759 76 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEG-I-PPDQQRLIFAGKQLEDGRTLADYNIQK--ESTLHLVL 147 (457)
Q Consensus 76 ~~~i~vk~~~g--~~~~l~v~~~~tV~~lK~~i~~~~g-i-p~~~q~L~~~g~~L~d~~tl~~y~i~~--~s~i~l~~ 147 (457)
+..++||..+. +...|..+...||++||..++.... - -..+|||+|.||.|.|...+++.-++. ..++|++.
T Consensus 9 ~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlvc 86 (391)
T KOG4583|consen 9 PVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLVC 86 (391)
T ss_pred ceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHhc
Confidence 45667777654 4577888889999999999987653 2 245799999999999999999875532 33455543
No 162
>smart00455 RBD Raf-like Ras-binding domain.
Probab=86.95 E-value=1.7 Score=32.10 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=39.8
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeecc
Q 012759 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (457)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g 47 (457)
..|-.++|++..+.+.|+.|+.++=+++-++.|+.++.-.++..|
T Consensus 2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 456789999999999999999999999999999998876676654
No 163
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=86.69 E-value=5.7 Score=28.58 Aligned_cols=57 Identities=19% Similarity=0.232 Sum_probs=40.3
Q ss_pred EEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
.++++++.|+++|.+.+. ++ ....+..+|..+..+. -.+.-+++|+.|.+.-...||
T Consensus 9 ~~~~~~~~tl~~ll~~l~----~~-~~~~v~vN~~~v~~~~-~~~~~L~~gD~vei~~~v~GG 65 (65)
T PRK06944 9 TLSLPDGATVADALAAYG----AR-PPFAVAVNGDFVARTQ-HAARALAAGDRLDLVQPVAGG 65 (65)
T ss_pred EEECCCCCcHHHHHHhhC----CC-CCeEEEECCEEcCchh-cccccCCCCCEEEEEeeccCC
Confidence 456778889999988763 33 2456778888875432 222337789999999888887
No 164
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=86.18 E-value=4.6 Score=29.21 Aligned_cols=58 Identities=17% Similarity=0.345 Sum_probs=43.3
Q ss_pred EEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
.++++.+.|+.++-.. .++++....+..+|..+.... -.+.-+++|+.|.+.--.-||
T Consensus 9 ~~~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~~-~~~~~l~~gD~vei~~~vgGG 66 (66)
T PRK05659 9 PRELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRSQ-HASTALREGDVVEIVHALGGG 66 (66)
T ss_pred EEEcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHHH-cCcccCCCCCEEEEEEEecCC
Confidence 4567788899888765 588888888889998876332 223336789999998877776
No 165
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=86.12 E-value=4.1 Score=30.89 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=34.5
Q ss_pred EEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEecCc
Q 012759 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 124 (457)
Q Consensus 88 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~ 124 (457)
++.|+|.+..+..+|.++|.++.++|++...|.|...
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde 48 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE 48 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence 8999999999999999999999999999999988754
No 166
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=85.36 E-value=5.5 Score=30.12 Aligned_cols=59 Identities=17% Similarity=0.299 Sum_probs=45.5
Q ss_pred EEEEecCC-chHHHHHHHHhhhcC-C-C-CCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 393 ITLEVESS-DTIDNVKAKIQDKEG-I-P-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 393 ~~l~v~~~-~tV~~lK~~i~~~~g-i-p-~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
..++++.+ .||.+|+..+.++.+ + . .....+..|++...+ +.-+++|+.|.+.-+..||
T Consensus 18 ~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~PpvsGG 80 (80)
T TIGR01682 18 ETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVSGG 80 (80)
T ss_pred EEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCCCC
Confidence 47788876 899999999999874 1 1 133467778888775 4567789999999888887
No 167
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=85.19 E-value=5.9 Score=30.52 Aligned_cols=61 Identities=11% Similarity=0.264 Sum_probs=45.8
Q ss_pred EEEEEecCCchHHHHHHHHhhhcCC-----------CCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 392 TITLEVESSDTIDNVKAKIQDKEGI-----------PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~gi-----------p~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
...++++ +.||.+|.+.+.++..- .-....+..||+...++.. .-+++|+.|.+.-+..||
T Consensus 17 ~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsGG 88 (88)
T TIGR01687 17 SEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSGG 88 (88)
T ss_pred eEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcCC
Confidence 4567776 89999999999988631 0123567778988875532 567889999999999988
No 168
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=85.12 E-value=7.9 Score=29.95 Aligned_cols=64 Identities=20% Similarity=0.228 Sum_probs=43.8
Q ss_pred EEEEEecCCchHHHHHHHHhhhcCCCCCCeEEE-E---CCe-EcC-CCCcccccCCCCCCEEEEEEecCCC
Q 012759 392 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F---AGK-QLE-DGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~-~---~g~-~L~-d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
.++..++..+||+.+...+.+.+.| ...-||- + ++. .|. .+.|+.+.|+.+|-+|-+-.|..=|
T Consensus 15 ~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~DG 84 (88)
T PF14836_consen 15 VLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNEDG 84 (88)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TTS
T ss_pred HhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccCC
Confidence 6778889999999999999999999 5556653 3 222 454 4469999999999999888775433
No 169
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=84.52 E-value=4.5 Score=29.25 Aligned_cols=59 Identities=20% Similarity=0.371 Sum_probs=45.2
Q ss_pred EEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 393 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 393 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
..++++.+.||.+|.+.+ ++++....+..+|+.+..+. -.+.-+++|+.|.+.-...||
T Consensus 7 ~~~~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~~-~~~~~L~~gD~V~ii~~v~GG 65 (65)
T cd00565 7 EPREVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRSE-WASTPLQDGDRIEIVTAVGGG 65 (65)
T ss_pred eEEEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHHH-cCceecCCCCEEEEEEeccCC
Confidence 346667888999998876 47788888889999886541 223447889999999888887
No 170
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=84.47 E-value=5.2 Score=29.00 Aligned_cols=57 Identities=19% Similarity=0.310 Sum_probs=43.1
Q ss_pred EEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
..+++++.|+.+|-.. .++++...-+.+++..+..+. .+.+ +++|+.|.+.--.-||
T Consensus 9 ~~~~~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~-~~~~-L~~gD~ieIv~~VgGG 65 (65)
T PRK05863 9 QVEVDEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSD-WATK-LRDGARLEVVTAVQGG 65 (65)
T ss_pred EEEcCCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhH-hhhh-cCCCCEEEEEeeccCC
Confidence 3455678898887665 588999999999999886433 1235 8999999998877776
No 171
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=84.15 E-value=8.8 Score=27.84 Aligned_cols=58 Identities=12% Similarity=0.206 Sum_probs=42.5
Q ss_pred EEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
.++++.+.|+.+|...+ +.+.....+-.|+..+..+ .-+..-+++|+.|.+.-...||
T Consensus 9 ~~~~~~~~tl~~ll~~l----~~~~~~vaVavN~~iv~r~-~w~~~~L~~gD~Ieii~~v~GG 66 (66)
T PRK08053 9 PMQCAAGQTVHELLEQL----NQLQPGAALAINQQIIPRE-QWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_pred EEEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEeChH-HcCccccCCCCEEEEEEEccCC
Confidence 45567788999988763 5566667888899988632 2334457889999998888887
No 172
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=84.11 E-value=2.4 Score=37.87 Aligned_cols=60 Identities=18% Similarity=0.318 Sum_probs=50.0
Q ss_pred EEEEeecCccHHHHHHHhhhhcCCCCCCceEE-ecC-----eec-cCCCcccccccccCceEEEEEE
Q 012759 317 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG-----KQL-EDGRTLADYNIQKESTLHLVLR 376 (457)
Q Consensus 317 ~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~-~~g-----~~L-~d~~~l~~~~i~~~~~l~l~~~ 376 (457)
..-+.+++.|+.++|.+++-.+|.+++.+.|. |.+ ..| +++..|..|+...+-.||++-.
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~ 81 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDS 81 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEec
Confidence 34567899999999999999999999999988 333 345 5688999999999999998743
No 173
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=83.99 E-value=5.6 Score=28.66 Aligned_cols=58 Identities=19% Similarity=0.366 Sum_probs=44.0
Q ss_pred EEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
.++++.+.|+.+|.+.+ ++++....+..+|+.+..+. -.++-+++|+.|.+.-..-||
T Consensus 7 ~~~~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~~-~~~~~L~~gD~veii~~V~GG 64 (64)
T TIGR01683 7 PVEVEDGLTLAALLESL----GLDPRRVAVAVNGEIVPRSE-WDDTILKEGDRIEIVTFVGGG 64 (64)
T ss_pred EEEcCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHHH-cCceecCCCCEEEEEEeccCC
Confidence 45567788999998865 57778888889999885332 334568889999998888887
No 174
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=83.54 E-value=4.2 Score=30.70 Aligned_cols=45 Identities=16% Similarity=0.334 Sum_probs=37.9
Q ss_pred eeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECC
Q 012759 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 427 (457)
Q Consensus 382 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g 427 (457)
.+.++. .|.++.+.++++.|..+|+.+|+++.+++.....|.|..
T Consensus 3 ~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 3 DVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred cEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 344554 567899999999999999999999999998888888853
No 175
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=83.53 E-value=8.6 Score=34.56 Aligned_cols=75 Identities=27% Similarity=0.355 Sum_probs=53.8
Q ss_pred CceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCC-eEEEE--C-C---eEcCCCCcccccCCC-CCCEEEEE
Q 012759 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF--A-G---KQLEDGRTLADYNIQ-KESTLHLV 450 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~-q~l~~--~-g---~~L~d~~tL~~~~I~-~~~~i~l~ 450 (457)
.++.+.|..++|....+.+++++|+.++...++.+.|++... +-|.+ . + ..++...+|.+.... ....+++.
T Consensus 2 ~~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr 81 (207)
T smart00295 2 KPRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFR 81 (207)
T ss_pred CcEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEE
Confidence 345677888899999999999999999999999999995422 23333 1 1 356667778777665 34556665
Q ss_pred Eec
Q 012759 451 LRL 453 (457)
Q Consensus 451 ~r~ 453 (457)
.|.
T Consensus 82 ~r~ 84 (207)
T smart00295 82 VKF 84 (207)
T ss_pred EEE
Confidence 553
No 176
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=83.51 E-value=1.8 Score=45.59 Aligned_cols=182 Identities=18% Similarity=0.193 Sum_probs=103.0
Q ss_pred eEEEeecCCChHHHHHHHHhhhhCCCCCceEEEE----CCeec--CCCCCccccCCCcCcEEEEEE--Eec-CCeeEEEE
Q 012759 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF----AGKQL--EDGRTLADYNIQKESTLHLVL--RLR-GGMQIFVK 234 (457)
Q Consensus 164 ~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~----~g~~L--~d~~tL~~y~I~~~~~i~l~~--~~~-~~~~i~V~ 234 (457)
-+.+.|+...++..+|+.|++..++|.+..++.- +|..+ .++.||+. ..++++|.+-+ .+. +...+.|-
T Consensus 878 ~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~--~~~~~~iTI~LG~~Lk~dE~~~KI~ 955 (1203)
T KOG4598|consen 878 FHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSG--AFQSCFITIKLGAPLKSDEKMMKII 955 (1203)
T ss_pred heeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhh--hcccceEEEEecCcCCCCceeeEEE
Confidence 3568899999999999999999999999988852 23333 45667765 34555554433 221 22222222
Q ss_pred cc---CCc------eEEEEeeCCccHHHHHHHHhhhcC--------CCCCCeEEEeCCcccCCCccccccccCCCCeEEE
Q 012759 235 TL---TGK------TITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 297 (457)
Q Consensus 235 ~~---~g~------~~~~~v~~~~tV~~lK~~I~~~~~--------ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l 297 (457)
.+ ..+ .+...+..+.||++.|..+-.++. +.....|+...++. ..++-+.++++-.++.=+.
T Consensus 956 ~L~~l~NE~e~~k~l~e~V~~~~tT~~Q~K~ELi~~L~~i~~~~ltLS~~r~R~~~K~g~-~Pg~~~lD~~~~~eD~~~~ 1034 (1203)
T KOG4598|consen 956 LLDILENERENWKPLFELVVSQSTTIGQVKLELLRMLKEVYGEELTLSMVRLRELGKSGV-GPGRAVLDPNDTLEDRSYN 1034 (1203)
T ss_pred eehhhhccccCCcchhhhhhcCcccHHHHHHHHHHHHHHHhhcccchhHHHHHHHccCCc-CCceEecCcchhhhhhhhh
Confidence 11 111 234556899999999887665443 33344444444332 2333333333332221100
Q ss_pred EE---------------eecCceeeEEEeeCCcE-----EEEEeecCccHHHHHHHhhhhcCCCCCCceEE
Q 012759 298 VL---------------RLRGGMQIFVKTLTGKT-----ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348 (457)
Q Consensus 298 ~~---------------~~~~~~~i~i~~~~g~~-----~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~ 348 (457)
.. +.-...+|+++-|.--+ |.=.+-+...+.+++..+.+..|||.++-.++
T Consensus 1035 ~~~~~~~qE~~deV~~~k~~~sL~i~vRRW~Ps~~e~~pFQEV~Ld~~~~~E~Re~LS~ISgIPiD~l~~~ 1105 (1203)
T KOG4598|consen 1035 WCSHLYLQEITDEVMIGKPGESLPIMVRRWRPSTVEVNPFQEVLLDANAEVEFREALSKISGIPVDRLAIT 1105 (1203)
T ss_pred hHHHHHHHHHHhhcccCCCCccchhhheeccccceecCCceeEEecCcchHHHHHHHHHhcCCchhhhhhh
Confidence 00 11112356665554321 11112356678999999999999999975544
No 177
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=83.26 E-value=4.6 Score=30.03 Aligned_cols=63 Identities=14% Similarity=0.249 Sum_probs=50.7
Q ss_pred EEEEEecCCchHHHHHHHHhhhcCC--CCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 392 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~gi--p~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
...+.+....||.+|.+.+.....- ......+..||+...+ .-.+.-+++|+.|.+.-...||
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvsGG 77 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVSGG 77 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTSTS
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCCCC
Confidence 5778889999999999999888631 2366788899999988 2445556789999998888887
No 178
>PRK07440 hypothetical protein; Provisional
Probab=83.15 E-value=9.6 Score=28.12 Aligned_cols=67 Identities=19% Similarity=0.328 Sum_probs=49.5
Q ss_pred ceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
.|+|.+. |+ ..++..+.||.+|-.. .++++...-+-.||..+.-+ .-++.-+++|+.|.+..-.-||
T Consensus 4 ~m~i~vN---G~--~~~~~~~~tl~~lL~~----l~~~~~~vav~~N~~iv~r~-~w~~~~L~~gD~IEIv~~v~GG 70 (70)
T PRK07440 4 PITLQVN---GE--TRTCSSGTSLPDLLQQ----LGFNPRLVAVEYNGEILHRQ-FWEQTQVQPGDRLEIVTIVGGG 70 (70)
T ss_pred ceEEEEC---CE--EEEcCCCCCHHHHHHH----cCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEecCC
Confidence 5666655 43 4667788999988754 57888888889999988732 2445557889999998887777
No 179
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=82.14 E-value=5.2 Score=29.67 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=35.9
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeecc
Q 012759 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (457)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g 47 (457)
+.|-.++|++-.+.|.|+.||.++=+++-++.|+.++.=.++..|
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~ 47 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG 47 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 567789999999999999999999999999999998875554444
No 180
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=81.89 E-value=6.6 Score=30.20 Aligned_cols=67 Identities=12% Similarity=0.237 Sum_probs=49.4
Q ss_pred ceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
.|+|.|. |+ ..+++.+.||.+|-.. .++++...-+-.||..+.. ..-+.+-+++|+.|.+.--.-||
T Consensus 18 ~m~I~VN---G~--~~~~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVpr-~~w~~t~L~egD~IEIv~~VgGG 84 (84)
T PRK06083 18 LITISIN---DQ--SIQVDISSSLAQIIAQ----LSLPELGCVFAINNQVVPR-SEWQSTVLSSGDAISLFQAIAGG 84 (84)
T ss_pred eEEEEEC---Ce--EEEcCCCCcHHHHHHH----cCCCCceEEEEECCEEeCH-HHcCcccCCCCCEEEEEEEecCC
Confidence 3555554 54 4556778899888775 4788888888899999853 24556668889999998877777
No 181
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=81.81 E-value=3.9 Score=31.26 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=34.6
Q ss_pred cCCceEEEEeeCCccHHHHHHHHhhhcCCCC-CCeEEEeCCcc
Q 012759 236 LTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQ 277 (457)
Q Consensus 236 ~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~-~~q~L~~~g~~ 277 (457)
.+|..+.+.+.++.+..+|+++|.+++++.. ....|.|....
T Consensus 7 ~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Dde 49 (82)
T cd06407 7 YGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDD 49 (82)
T ss_pred eCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCC
Confidence 5677999999999999999999999999865 55677775543
No 182
>PRK06437 hypothetical protein; Provisional
Probab=81.73 E-value=7.2 Score=28.49 Aligned_cols=55 Identities=18% Similarity=0.309 Sum_probs=42.7
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEecCcccCCCCcccccccccCCcceEEEE
Q 012759 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (457)
Q Consensus 85 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~ 148 (457)
.++...++++...||.+|=++ .|+++..-.+..+|+.+. .++-+++|+.|.+...
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~ 63 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEV 63 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEec
Confidence 556678888888998887654 488888888889999987 4567778898877643
No 183
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=80.99 E-value=4.3 Score=30.23 Aligned_cols=49 Identities=8% Similarity=0.152 Sum_probs=40.7
Q ss_pred EEEccCCceEEEEeeCCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCC
Q 012759 232 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 280 (457)
Q Consensus 232 ~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d 280 (457)
.|-.++|+..++.+.+++|+.++=+.++.+.++.|..+.|-..-..++|
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrlk~~~~e~ 51 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRLKFLRMEN 51 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeEEEEEecCC
Confidence 3556889999999999999999999999999999998777654443444
No 184
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=79.50 E-value=7.6 Score=29.70 Aligned_cols=64 Identities=16% Similarity=0.226 Sum_probs=45.2
Q ss_pred CCCEEEEEecCCchHHHHHHHHhhhcCCCC-CCeEEEECCe-----EcCCCCcccc----cCCCCCCEEEEEEe
Q 012759 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGK-----QLEDGRTLAD----YNIQKESTLHLVLR 452 (457)
Q Consensus 389 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~-~~q~l~~~g~-----~L~d~~tL~~----~~I~~~~~i~l~~r 452 (457)
.|..+.+.++++.+..+|+..|+++.++.. ..+.|.|-.- .|..+.-|.+ |.....++|.+.++
T Consensus 8 ~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai~i~~~~~~~~v~l~v~ 81 (82)
T cd06407 8 GEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEECIDVYRSSGSHTIRLLVH 81 (82)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHHHHHHHHCCCCeEEEEee
Confidence 466899999999999999999999999976 6777877322 2222222333 55556677766654
No 185
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=79.48 E-value=6.2 Score=29.24 Aligned_cols=54 Identities=20% Similarity=0.240 Sum_probs=39.9
Q ss_pred eEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEE--CCeEcCCCCcc
Q 012759 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTL 436 (457)
Q Consensus 383 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~--~g~~L~d~~tL 436 (457)
+.|.-++|+...+.+.|+.||.|.-..+.++.|+.++.-.++. ..++|..+...
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~d~ 58 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQDS 58 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTSBG
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCCce
Confidence 3455678999999999999999999999999999998877664 45566655433
No 186
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=78.73 E-value=4.3 Score=39.99 Aligned_cols=69 Identities=19% Similarity=0.281 Sum_probs=55.0
Q ss_pred cCceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcC-CCCCCeEEE--ECCeEcCCC-CcccccCCCCCCE
Q 012759 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDG-RTLADYNIQKEST 446 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~g-ip~~~q~l~--~~g~~L~d~-~tL~~~~I~~~~~ 446 (457)
.++..|-|+..+|+.....++...||.+++..|...-. -+...|.|. |-.++|.|+ .||++.|+.+-..
T Consensus 303 ~PtTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvl 375 (380)
T KOG2086|consen 303 EPTTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVL 375 (380)
T ss_pred CCcceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhh
Confidence 35677899999999999999999999999999998753 444467665 568999764 5999999876543
No 187
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=78.62 E-value=8.6 Score=29.64 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=36.5
Q ss_pred EEEee-CCcEEEEEeecCccHHHHHHHhhhhcCCCCCCceEEecCeeccCCCcc
Q 012759 308 FVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360 (457)
Q Consensus 308 ~i~~~-~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~l 360 (457)
.||.+ +|.++.+.++++.+..+|.++|.+++++. ..-.+.|... .|..++
T Consensus 4 kVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE--GD~iti 54 (86)
T cd06408 4 RVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD--GDMITM 54 (86)
T ss_pred EEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC--CCCccc
Confidence 34444 78999999999999999999999999985 2333446544 344444
No 188
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=78.55 E-value=8.6 Score=29.76 Aligned_cols=64 Identities=19% Similarity=0.212 Sum_probs=43.2
Q ss_pred cEEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEec----C-ccc-CCCCcccccccccCCcceEEEEeec
Q 012759 87 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----G-KQL-EDGRTLADYNIQKESTLHLVLRLRG 151 (457)
Q Consensus 87 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~----g-~~L-~d~~tl~~y~i~~~s~i~l~~~~~~ 151 (457)
..++...+..|||..++..+.+.+.| ..+-||.-. + ..| +.+.|+.+.++.+|-+|.+..+...
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~D 83 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNED 83 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TT
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccC
Confidence 46677889999999999999999999 556777632 2 235 3457999999999887777666543
No 189
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=78.00 E-value=2.5 Score=41.15 Aligned_cols=63 Identities=21% Similarity=0.312 Sum_probs=55.9
Q ss_pred CCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCC--CcccccCCCCCCEEEEEE
Q 012759 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG--RTLADYNIQKESTLHLVL 451 (457)
Q Consensus 389 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~--~tL~~~~I~~~~~i~l~~ 451 (457)
..+.+.+.|..+.....++..+....|++.+..-++|++.++..+ .+|.+||+..++++.+..
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ 75 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRC 75 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccC
Confidence 456788899999999999999999999999999999999999755 589999999999887654
No 190
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=77.19 E-value=1.1 Score=43.09 Aligned_cols=74 Identities=27% Similarity=0.408 Sum_probs=53.3
Q ss_pred ceeeeEeeccC--ceEEEeecCCChHHHHHHHHhhhhC-CC-CCceEEEECCeecCCCCCccccCCC--cCcEEEEEEEe
Q 012759 152 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEG-IP-PDQQRLIFAGKQLEDGRTLADYNIQ--KESTLHLVLRL 225 (457)
Q Consensus 152 ~~~i~vk~~~g--~~~~~~v~~~~tV~~lK~~i~~~~g-ip-~~~q~L~~~g~~L~d~~tL~~y~I~--~~~~i~l~~~~ 225 (457)
.+.+.+|..+. +...+..+...||++||..++...- -| ..+|||+|.|+.|.|...+.+.=.+ ...++||+...
T Consensus 9 ~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlvcns 88 (391)
T KOG4583|consen 9 PVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLVCNS 88 (391)
T ss_pred ceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHhcCC
Confidence 34566666654 5678888889999999999987653 22 3469999999999999888876443 23455666543
No 191
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=75.91 E-value=11 Score=28.53 Aligned_cols=44 Identities=18% Similarity=0.321 Sum_probs=35.5
Q ss_pred eeEEEcCCCCEEE-EEecCCchHHHHHHHHhhhcCCCCCCeEEEEC
Q 012759 382 QIFVKTLTGKTIT-LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 426 (457)
Q Consensus 382 ~i~v~~~~g~~~~-l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~ 426 (457)
.+.+....+ .+. +.++++.+..+|+.+|++..+.+.....+.|.
T Consensus 3 ~vK~~~~~~-~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~ 47 (84)
T PF00564_consen 3 RVKVRYGGD-IRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYK 47 (84)
T ss_dssp EEEEEETTE-EEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEE
T ss_pred EEEEEECCe-eEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEee
Confidence 445554443 444 89999999999999999999999888899884
No 192
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=75.37 E-value=6.4 Score=27.74 Aligned_cols=47 Identities=21% Similarity=0.327 Sum_probs=34.9
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccc
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~ 58 (457)
|+|+| ||+ .++++.+.|+.++|+++.... --++++|-...++..|.+
T Consensus 1 M~I~v---N~k--~~~~~~~~tl~~lr~~~k~~~------DI~I~NGF~~~~d~~L~e 47 (57)
T PF14453_consen 1 MKIKV---NEK--EIETEENTTLFELRKESKPDA------DIVILNGFPTKEDIELKE 47 (57)
T ss_pred CEEEE---CCE--EEEcCCCcCHHHHHHhhCCCC------CEEEEcCcccCCccccCC
Confidence 77777 454 456888899999999987733 258899999877665543
No 193
>KOG4261 consensus Talin [Cytoskeleton]
Probab=75.16 E-value=4.6 Score=43.19 Aligned_cols=101 Identities=26% Similarity=0.341 Sum_probs=77.5
Q ss_pred eEEEEeeCCccHHHHHHHHhhhcC---CCCCCeEEEeC------CcccCCCccccccccCCCCeEEEEEeecCceeeEEE
Q 012759 240 TITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFA------GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVK 310 (457)
Q Consensus 240 ~~~~~v~~~~tV~~lK~~I~~~~~---ip~~~q~L~~~------g~~L~d~~tl~~~~i~~~~tl~l~~~~~~~~~i~i~ 310 (457)
+-++..+|+.+|-+--+.|.+++. .-+..+-|... |--|+.++++.+|.+.+++++..-.+. -..-|+
T Consensus 14 ~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~k~---r~lkvr 90 (1003)
T KOG4261|consen 14 VKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKRKQ---RPLKVR 90 (1003)
T ss_pred eeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchhhhc---ccceee
Confidence 334666799999888777877764 22445555432 344899999999999999998664332 257789
Q ss_pred eeCCcEEEEEeecCccHHHHHHHhhhhcCCCCC
Q 012759 311 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 343 (457)
Q Consensus 311 ~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~ 343 (457)
+++|..-++.+..+.+|.+|--.|..+-||--.
T Consensus 91 mldg~vkti~vd~sq~v~~L~~~ic~~igItny 123 (1003)
T KOG4261|consen 91 MLDGAVKTIMVDDSQPVSQLMMTICNKIGITNY 123 (1003)
T ss_pred ecccccceeeecccccHHHHHHHHHhccCccch
Confidence 999999999999999999999999988887653
No 194
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=74.90 E-value=19 Score=32.28 Aligned_cols=63 Identities=29% Similarity=0.381 Sum_probs=45.5
Q ss_pred CeeEEEEccCCceEEEEeeCCccHHHHHHHHhhhcCCCCCC-eEEEeCC------cccCCCccccccccC
Q 012759 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAG------KQLEDGRTLADYNIQ 290 (457)
Q Consensus 228 ~~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~-q~L~~~g------~~L~d~~tl~~~~i~ 290 (457)
.+.+.|..++|.+..+.+++..|++++-..++++.||+..+ ..|.+.. .-++..+++.+....
T Consensus 3 ~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~ 72 (207)
T smart00295 3 PRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVK 72 (207)
T ss_pred cEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCC
Confidence 35677888999999999999999999999999999996543 3344321 124455566655544
No 195
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=74.64 E-value=74 Score=29.65 Aligned_cols=139 Identities=17% Similarity=0.227 Sum_probs=76.0
Q ss_pred ccccCCCCeEEEEEeecCceeeEEE-eeCCcEEEEE----ee-cCccHHHHHHHhhhhcCCCCCCceEEecCeeccCCCc
Q 012759 286 DYNIQKESTLHLVLRLRGGMQIFVK-TLTGKTITLE----VE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 359 (457)
Q Consensus 286 ~~~i~~~~tl~l~~~~~~~~~i~i~-~~~g~~~~l~----v~-~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~ 359 (457)
+|-+.+||+|.+...-.+....... ..+| ++++. +. .+.|+.++.+.|..++.-.
T Consensus 1 ~Y~l~pGD~l~I~v~~~~~l~~~~~V~~dG-~I~~P~iG~v~v~G~T~~e~~~~I~~~l~~~------------------ 61 (239)
T TIGR03028 1 DYRLGPGDVLRITVFQQPDLTTDTRVSESG-SITFPLIGEVKLGGETPAAAERKIASRLSKG------------------ 61 (239)
T ss_pred CcEeCCCCEEEEEEecCcccceeEEECCCC-eEEeeecceEEECCCCHHHHHHHHHHHHhhc------------------
Confidence 4778888888776654444332222 2333 33332 22 6899999999999873210
Q ss_pred ccccccccCceEEEEEEecCceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCC--C-e--EEEECCeE-----
Q 012759 360 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD--Q-Q--RLIFAGKQ----- 429 (457)
Q Consensus 360 l~~~~i~~~~~l~l~~~~~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~--~-q--~l~~~g~~----- 429 (457)
.|- .+..+.+......+..++|...-.+.=.+.+.+..|+.++-.+.- |+.+. . . +...+|+.
T Consensus 62 --~~~--~~p~V~V~v~~~~~~~V~V~GeV~~PG~~~l~~~~tl~~ai~~AG---G~~~~~~~~~~i~~~~~g~~~~~~i 134 (239)
T TIGR03028 62 --GFV--KQPQVTINVLQYRGQQVSVLGQVNRPGRYPLETAGRVSDVLALAG---GVTPDGADVITLVREREGKIFRKQI 134 (239)
T ss_pred --Ccc--cCCEEEEEEEeccceEEEEEEEecCCceEEcCCCCcHHHHHHHcC---CCCccCCCeEEEEEecCCeEEEEEE
Confidence 011 111233333333456777765544445566777788887655443 44432 2 1 12235554
Q ss_pred -----cCCCCcccccCCCCCCEEEEE
Q 012759 430 -----LEDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 430 -----L~d~~tL~~~~I~~~~~i~l~ 450 (457)
+.....-.++-+++||+|++-
T Consensus 135 dl~~l~~~g~~~~ni~L~~GD~I~V~ 160 (239)
T TIGR03028 135 DFPALFNPGGDNENILVAGGDIIYVD 160 (239)
T ss_pred EHHHHHhcCCCcCCcEEcCCCEEEEc
Confidence 223334456778899998763
No 196
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=74.53 E-value=13 Score=27.81 Aligned_cols=59 Identities=12% Similarity=0.210 Sum_probs=42.1
Q ss_pred eEEEeecCCChHHHHHHHHhhhhCC----CCCceEEEECCeecCCCCCccccCCCcCcEEEEEEEecC
Q 012759 164 TITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (457)
Q Consensus 164 ~~~~~v~~~~tV~~lK~~i~~~~gi----p~~~q~L~~~g~~L~d~~tL~~y~I~~~~~i~l~~~~~~ 227 (457)
...++++...||.+|.+.+...++- ......+..+|+... .++-+.+|+.|.++....+
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~G 79 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVSG 79 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCCC
Confidence 4667777789999999999877542 233455667787776 4567889999988754443
No 197
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=74.38 E-value=14 Score=26.47 Aligned_cols=64 Identities=23% Similarity=0.484 Sum_probs=49.4
Q ss_pred CCceEEEEeeCCccHHHHHHHHhhhcC---CCCCCeEEEe-CCcccCCCccccccccCCCCeEEEEEe
Q 012759 237 TGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLR 300 (457)
Q Consensus 237 ~g~~~~~~v~~~~tV~~lK~~I~~~~~---ip~~~q~L~~-~g~~L~d~~tl~~~~i~~~~tl~l~~~ 300 (457)
+|+...++.+.+....-+.++..+..| -|++.-.|.- +|..++-++.+.+||+.++-+++|.++
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLK 71 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLK 71 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEee
Confidence 677788888888877777776655544 5777666653 688889999999999999999877654
No 198
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=73.85 E-value=17 Score=27.29 Aligned_cols=44 Identities=16% Similarity=0.335 Sum_probs=36.3
Q ss_pred EEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEecC
Q 012759 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 123 (457)
Q Consensus 79 i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g 123 (457)
+.++. +|....+.+++..|-.+|+.+|.++.+.+.....|.|..
T Consensus 4 vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 4 VKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred EEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 44543 678899999999999999999999999887667777764
No 199
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=73.82 E-value=25 Score=25.64 Aligned_cols=61 Identities=16% Similarity=0.228 Sum_probs=43.8
Q ss_pred CCCEEEEEecCC-chHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 389 TGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 389 ~g~~~~l~v~~~-~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
+|+. .+++.+ .||.+|-+. .++++...-+-.+|..+..+ .-+..-+++|+.|.+..-.-||
T Consensus 6 NG~~--~~~~~~~~tv~~lL~~----l~~~~~~vav~vN~~iv~r~-~w~~~~L~~gD~iEIv~~VgGG 67 (67)
T PRK07696 6 NGNQ--IEVPESVKTVAELLTH----LELDNKIVVVERNKDILQKD-DHTDTSVFDGDQIEIVTFVGGG 67 (67)
T ss_pred CCEE--EEcCCCcccHHHHHHH----cCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEecCC
Confidence 3543 455555 678877654 57888888888999988744 2444557889999998877776
No 200
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=73.79 E-value=4.3 Score=39.59 Aligned_cols=68 Identities=19% Similarity=0.284 Sum_probs=58.3
Q ss_pred cCceEEEeecCCChHHHHHHHHhhhhCCCCCceEEEECCeecCCC--CCccccCCCcCcEEEEEEEecCC
Q 012759 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG--RTLADYNIQKESTLHLVLRLRGG 228 (457)
Q Consensus 161 ~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~--~tL~~y~I~~~~~i~l~~~~~~~ 228 (457)
..+.+++.|...-....++..++...|++.+.--++|+++.+.++ .++..||+..++++.+-.+.+..
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks~d~ 80 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKSSDP 80 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCCCCC
Confidence 566788888888889999999999999999999999999999765 67999999999999776664443
No 201
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=73.77 E-value=13 Score=38.35 Aligned_cols=71 Identities=14% Similarity=0.186 Sum_probs=55.4
Q ss_pred eeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCC----CCCCeEEEE---CCeEcCCCCcccccCCCCCCEEEEEEec
Q 012759 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLVLRL 453 (457)
Q Consensus 382 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gi----p~~~q~l~~---~g~~L~d~~tL~~~~I~~~~~i~l~~r~ 453 (457)
++.|...+ +...+-++.+..|.||-..+-+..+= +..+..|.+ +|.+|+.+.||++.||.||+++++.-+-
T Consensus 4 RVtV~~~~-~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~~ 81 (452)
T TIGR02958 4 RVTVLAGR-RAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPAS 81 (452)
T ss_pred EEEEeeCC-eeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeCC
Confidence 46666554 34778888999999999999888754 233444544 7999999999999999999999998653
No 202
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=71.98 E-value=32 Score=25.21 Aligned_cols=59 Identities=19% Similarity=0.371 Sum_probs=45.9
Q ss_pred EEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 393 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 393 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
-.++++...|+++|-.. .|++++..-...||..+..+. -++.-+++|+-|.+.--.-||
T Consensus 10 ~~~e~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVpr~~-~~~~~l~~gD~ievv~~v~GG 68 (68)
T COG2104 10 KEVEIAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVPRSQ-WADTILKEGDRIEVVRVVGGG 68 (68)
T ss_pred EEEEcCCCCcHHHHHHH----hCCCCceEEEEECCEEccchh-hhhccccCCCEEEEEEeecCC
Confidence 45777888999998765 688898888999999987432 345567788999888777776
No 203
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.57 E-value=5.8 Score=38.08 Aligned_cols=57 Identities=12% Similarity=0.199 Sum_probs=46.8
Q ss_pred EEEecCCchHHHHHHHHhhhcCCCCCCeEEEE---CCeE-----cCCCCcccccCCCCCCEEEEE
Q 012759 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQ-----LEDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~---~g~~-----L~d~~tL~~~~I~~~~~i~l~ 450 (457)
...+.-.-||.|+|..+..+-|+.+..++|++ +|+. ...++.|..|+|++|+.+-+-
T Consensus 351 s~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 351 SGLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred ceEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 34556678999999999999999999999998 4553 345678999999999988653
No 204
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=71.37 E-value=15 Score=27.46 Aligned_cols=42 Identities=7% Similarity=0.158 Sum_probs=36.9
Q ss_pred EEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEE
Q 012759 384 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 425 (457)
Q Consensus 384 ~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~ 425 (457)
.|..++|+..++.+.|++|+.|+-+..+++.++.|..-.|-.
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrl 44 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRL 44 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeEE
Confidence 456678999999999999999999999999999998876544
No 205
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=71.34 E-value=9.6 Score=29.35 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=35.3
Q ss_pred eEEEEccCCceEEEEeeCCccHHHHHHHHhhhcCCCCCC
Q 012759 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 268 (457)
Q Consensus 230 ~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~ 268 (457)
.+.|..++|.++.+.+..+++.+++=+.++.+.|+|.+.
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~ 41 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYT 41 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHH
Confidence 456777889999999999999999999999999998884
No 206
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=71.24 E-value=11 Score=27.92 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=38.1
Q ss_pred EEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccE
Q 012759 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48 (457)
Q Consensus 5 ~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~ 48 (457)
|..+||++-.+.+.|+.||.++=.|.-++-|++++.=.++.-|.
T Consensus 4 V~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~ 47 (73)
T cd01817 4 VILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGG 47 (73)
T ss_pred EECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecC
Confidence 45789999999999999999999999999999988766666553
No 207
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=71.20 E-value=89 Score=29.09 Aligned_cols=213 Identities=15% Similarity=0.175 Sum_probs=113.0
Q ss_pred ccCCCcCcEEEEEEEecCCeeEEEEccCCceEEEE----ee-CCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccc
Q 012759 210 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLE----VE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 284 (457)
Q Consensus 210 ~y~I~~~~~i~l~~~~~~~~~i~V~~~~g~~~~~~----v~-~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl 284 (457)
+|-|..|++|.+.+-........+......++.+- +. .+.|++++.+.|..++.- +
T Consensus 1 ~Y~l~pGD~l~I~v~~~~~l~~~~~V~~dG~I~~P~iG~v~v~G~T~~e~~~~I~~~l~~----------------~--- 61 (239)
T TIGR03028 1 DYRLGPGDVLRITVFQQPDLTTDTRVSESGSITFPLIGEVKLGGETPAAAERKIASRLSK----------------G--- 61 (239)
T ss_pred CcEeCCCCEEEEEEecCcccceeEEECCCCeEEeeecceEEECCCCHHHHHHHHHHHHhh----------------c---
Confidence 47788888888776543333333333333333322 33 777999999999876521 0
Q ss_pred cccccCCCCeEEEEEeecCceeeEEEeeCCcEEEEEeecCccHHHHHHHhhhhcCCCCCCc---eEE--ecCee------
Q 012759 285 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ---RLI--FAGKQ------ 353 (457)
Q Consensus 285 ~~~~i~~~~tl~l~~~~~~~~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q---~l~--~~g~~------ 353 (457)
+.-....+.+......+..++|-..=.+.-...+....|+.+.-.. -=|+.+... .+. .+|+.
T Consensus 62 ---~~~~~p~V~V~v~~~~~~~V~V~GeV~~PG~~~l~~~~tl~~ai~~---AGG~~~~~~~~~~i~~~~~g~~~~~~id 135 (239)
T TIGR03028 62 ---GFVKQPQVTINVLQYRGQQVSVLGQVNRPGRYPLETAGRVSDVLAL---AGGVTPDGADVITLVREREGKIFRKQID 135 (239)
T ss_pred ---CcccCCEEEEEEEeccceEEEEEEEecCCceEEcCCCCcHHHHHHH---cCCCCccCCCeEEEEEecCCeEEEEEEE
Confidence 0011112223333334456777555445455667777888876333 233333211 111 23332
Q ss_pred ----ccCCCcccccccccCceEEEEEEecCceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCC-CCCCeEEEE---
Q 012759 354 ----LEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIF--- 425 (457)
Q Consensus 354 ----L~d~~~l~~~~i~~~~~l~l~~~~~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gi-p~~~q~l~~--- 425 (457)
+.....-.++-+.+++.+++... -.++|...-++.-.+.+.++.|+.++-.+......- .+..-+++.
T Consensus 136 l~~l~~~g~~~~ni~L~~GD~I~V~~~----~~v~v~G~V~~pg~~~~~~~~tl~~al~~aGG~~~~a~~~~v~i~R~~~ 211 (239)
T TIGR03028 136 FPALFNPGGDNENILVAGGDIIYVDRA----PVFYIYGEVQRPGAYRLERNMTVMQALAQGGGLTPRGTERGIRVMRRDD 211 (239)
T ss_pred HHHHHhcCCCcCCcEEcCCCEEEEcCC----ccEEEEeEccCCeEEEeCCCCCHHHHHHhcCCCCcccCcceEEEEEECC
Confidence 22223334667788888888632 246676555556677778899988776665544432 122223332
Q ss_pred CCeEcCCCCcccccCCCCCCEEEEEEe
Q 012759 426 AGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 426 ~g~~L~d~~tL~~~~I~~~~~i~l~~r 452 (457)
+|+.-.-...+.+ .+++||+|++--+
T Consensus 212 ~g~~~~~~~~~~~-~l~~gDii~V~~s 237 (239)
T TIGR03028 212 KGAVEEVSGELGD-LVQPDDVIYVRES 237 (239)
T ss_pred CCcEEEEecCCCc-ccCCCCEEEEeCc
Confidence 3332111111222 3889999998644
No 208
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=70.81 E-value=17 Score=25.98 Aligned_cols=65 Identities=23% Similarity=0.489 Sum_probs=50.2
Q ss_pred eCCcEEEEEeecCccHHHHHHHhhhhc---CCCCCCceEE-ecCeeccCCCcccccccccCceEEEEEE
Q 012759 312 LTGKTITLEVESSDTIDNVKAKIQDKE---GIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLR 376 (457)
Q Consensus 312 ~~g~~~~l~v~~~~Tv~~lK~~I~~~~---~ip~~~q~l~-~~g~~L~d~~~l~~~~i~~~~~l~l~~~ 376 (457)
.+|+...++.+.++...-..++-.+.+ |-|+++=.|. -.|.+|+-++...+||+.++.+|.|..+
T Consensus 3 VNGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLK 71 (76)
T PF10790_consen 3 VNGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLK 71 (76)
T ss_pred eCCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEee
Confidence 467888888888887777666655443 4677765555 5788999999999999999999988764
No 209
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=69.91 E-value=8.2 Score=41.18 Aligned_cols=45 Identities=22% Similarity=0.441 Sum_probs=40.3
Q ss_pred cCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEcc
Q 012759 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 51 (457)
Q Consensus 7 ~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~ 51 (457)
..++..+.+-+.++.|+.++.++|.+..|+|...|.|+|.|....
T Consensus 321 ~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~h 365 (732)
T KOG4250|consen 321 MVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLSH 365 (732)
T ss_pred eccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCccc
Confidence 446788999999999999999999999999999999999876543
No 210
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=69.70 E-value=15 Score=27.38 Aligned_cols=46 Identities=22% Similarity=0.314 Sum_probs=39.4
Q ss_pred cCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECC--eEcCC
Q 012759 387 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLED 432 (457)
Q Consensus 387 ~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g--~~L~d 432 (457)
-++|+...+.+.|+.||.|+-.++.++-|++++.--++.-| ++|.-
T Consensus 6 LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~~k~l~~ 53 (73)
T cd01817 6 LPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGGDKPLVL 53 (73)
T ss_pred CCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecCCccccc
Confidence 46788899999999999999999999999999988777655 46653
No 211
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=69.46 E-value=10 Score=29.19 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=35.0
Q ss_pred eEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCcc
Q 012759 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40 (457)
Q Consensus 2 ~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~ 40 (457)
++=|-.++|.++++++..+|+.+++=+.+.++.|+|.+-
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~ 41 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYT 41 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHH
Confidence 345667899999999999999999999999999999875
No 212
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=69.10 E-value=9.6 Score=28.72 Aligned_cols=35 Identities=11% Similarity=0.252 Sum_probs=32.8
Q ss_pred EEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEC
Q 012759 392 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 426 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~ 426 (457)
++.+.++++.+..+|..+|+++...+++.-.|.|.
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~ 42 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYR 42 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEec
Confidence 57788999999999999999999999999999994
No 213
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=68.01 E-value=31 Score=25.32 Aligned_cols=52 Identities=10% Similarity=0.162 Sum_probs=38.3
Q ss_pred EEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEecCcccCCCCcccccccccCCcceEEEE
Q 012759 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (457)
Q Consensus 88 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~ 148 (457)
...++++...||.++-+.+ ++++..-.+..||..... ++-+++|+.|.+...
T Consensus 15 ~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~~ 66 (70)
T PRK08364 15 EKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE-----DDPVKDGDYVEVIPV 66 (70)
T ss_pred ceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC-----CcCcCCCCEEEEEcc
Confidence 5677888889999988665 667666677788888743 555778888877643
No 214
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=64.92 E-value=34 Score=26.36 Aligned_cols=46 Identities=15% Similarity=0.268 Sum_probs=34.9
Q ss_pred eEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEecCc
Q 012759 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 124 (457)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~ 124 (457)
+.|.|. ..|....+.|+++.+..+|.++|.++.++. ....+-|...
T Consensus 3 ikVKv~-~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE 48 (86)
T cd06408 3 IRVKVH-AQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD 48 (86)
T ss_pred EEEEEE-ecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC
Confidence 344443 478899999999999999999999999984 3445555543
No 215
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=64.57 E-value=18 Score=27.93 Aligned_cols=56 Identities=16% Similarity=0.286 Sum_probs=29.8
Q ss_pred EEec-CCchHHHHHHHHhh-hcCCCCCCe----EEEECCeE----cCCCCcccccCCCCCCEEEEE
Q 012759 395 LEVE-SSDTIDNVKAKIQD-KEGIPPDQQ----RLIFAGKQ----LEDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 395 l~v~-~~~tV~~lK~~i~~-~~gip~~~q----~l~~~g~~----L~d~~tL~~~~I~~~~~i~l~ 450 (457)
+.++ ...|+.+|-.+|-. +.|+..-.. .++|..-. -..+++|+++||.+|+.+.+.
T Consensus 2 v~~d~~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~ 67 (87)
T PF14732_consen 2 VKVDTKKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVD 67 (87)
T ss_dssp EEE-TTT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEE
T ss_pred EEEechhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEE
Confidence 4555 35699999998754 566655322 23332221 123468999999999998763
No 216
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=64.32 E-value=24 Score=34.95 Aligned_cols=70 Identities=23% Similarity=0.272 Sum_probs=53.9
Q ss_pred eeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhc--CCCCCCeEEEEC----CeE--cCCCCcccccCCCCCCEEEEEE
Q 012759 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFA----GKQ--LEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~--gip~~~q~l~~~----g~~--L~d~~tL~~~~I~~~~~i~l~~ 451 (457)
|.+.+|..+| ++.+++.++++.+-|-.++-+.. +-.|++..+.-+ |.. +..+.|+.+.|++.|..++|..
T Consensus 1 Mi~rfRsk~G-~~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 1 MIFRFRSKEG-QRRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred CeEEEecCCC-ceeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 4466777777 58899999999999988887765 456767666542 332 3467899999999999999976
No 217
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=63.66 E-value=12 Score=30.77 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=37.8
Q ss_pred CEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccc
Q 012759 391 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438 (457)
Q Consensus 391 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~ 438 (457)
+..-+-|+.+.||+++...|..+.++++++.-|+.++..+..+.++++
T Consensus 41 K~KfllVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~ 88 (121)
T PTZ00380 41 KVHFLALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGD 88 (121)
T ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHH
Confidence 444346999999999999999999999999666667766666666654
No 218
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=63.49 E-value=2.3 Score=40.66 Aligned_cols=62 Identities=19% Similarity=0.476 Sum_probs=0.0
Q ss_pred CceEEEEEccCCcEEEEEEcC-----CCCHHHHHHHHhh----------hhCCCCCCeE-----EEecCcccCCCCcccc
Q 012759 75 GGMQIFVKTLTGKTITLEVES-----SDTIDNVKAKIQD----------KEGIPPDQQR-----LIFAGKQLEDGRTLAD 134 (457)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~-----~~tV~~lK~~i~~----------~~gip~~~q~-----L~~~g~~L~d~~tl~~ 134 (457)
..+.|.+|......+.|.+.. +.+|.++|..+++ ..++|.+..+ |.|+-+.+.|.++|.+
T Consensus 77 ~sItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e 156 (309)
T PF12754_consen 77 KSITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAE 156 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHH
Confidence 346666666655544444432 4789999999999 8899998888 9999999999999998
Q ss_pred cc
Q 012759 135 YN 136 (457)
Q Consensus 135 y~ 136 (457)
..
T Consensus 157 ~l 158 (309)
T PF12754_consen 157 VL 158 (309)
T ss_dssp --
T ss_pred HH
Confidence 75
No 219
>KOG4261 consensus Talin [Cytoskeleton]
Probab=62.93 E-value=20 Score=38.62 Aligned_cols=102 Identities=26% Similarity=0.331 Sum_probs=77.9
Q ss_pred CcEEEEEeecCccHHHHHHHhhhhcCCC---CCCceEE------ecCeeccCCCcccccccccCceEEEEEEecCceeeE
Q 012759 314 GKTITLEVESSDTIDNVKAKIQDKEGIP---PDQQRLI------FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 384 (457)
Q Consensus 314 g~~~~l~v~~~~Tv~~lK~~I~~~~~ip---~~~q~l~------~~g~~L~d~~~l~~~~i~~~~~l~l~~~~~~~~~i~ 384 (457)
+-+.++-+.|+++|.|--+.|++++.-. +....|+ .+|--|++++++.+|-+.++.++.-..+.+ .+.
T Consensus 12 ~v~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~k~r---~lk 88 (1003)
T KOG4261|consen 12 NVVKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKRKQR---PLK 88 (1003)
T ss_pred ceeeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchhhhcc---cce
Confidence 4456789999999999999999875421 2222333 234457889999999888888877654332 356
Q ss_pred EEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCC
Q 012759 385 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 418 (457)
Q Consensus 385 v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~ 418 (457)
++.++|..-++.|+...+|.+|..-|+.+.||.-
T Consensus 89 vrmldg~vkti~vd~sq~v~~L~~~ic~~igItn 122 (1003)
T KOG4261|consen 89 VRMLDGAVKTIMVDDSQPVSQLMMTICNKIGITN 122 (1003)
T ss_pred eeecccccceeeecccccHHHHHHHHHhccCccc
Confidence 7778888899999999999999999999999864
No 220
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=62.58 E-value=18 Score=27.38 Aligned_cols=70 Identities=19% Similarity=0.250 Sum_probs=43.5
Q ss_pred eEEEEEcc------CC-cEEEEEEcCCCCHHHHHHHHhhhhC-CCC--CCeEEEecCcccCCCCcccccccccCCcceEE
Q 012759 77 MQIFVKTL------TG-KTITLEVESSDTIDNVKAKIQDKEG-IPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (457)
Q Consensus 77 ~~i~vk~~------~g-~~~~l~v~~~~tV~~lK~~i~~~~g-ip~--~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~ 146 (457)
|.|.|+.. .| ....++++...||.+|.+.+..... ... ..-.+..||+...+ ++-+.+|++|.+.
T Consensus 2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~-----~~~l~dgDeVai~ 76 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTE-----SAALKDGDELAII 76 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCC-----CcCcCCCCEEEEe
Confidence 56666643 24 4577788888999999999976541 111 11235567766543 4556788888776
Q ss_pred EEeec
Q 012759 147 LRLRG 151 (457)
Q Consensus 147 ~~~~~ 151 (457)
..-.|
T Consensus 77 PpvsG 81 (82)
T PLN02799 77 PPISG 81 (82)
T ss_pred CCCCC
Confidence 54333
No 221
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=61.96 E-value=16 Score=38.34 Aligned_cols=65 Identities=35% Similarity=0.526 Sum_probs=42.4
Q ss_pred CceEEEeecCCChHHHHHHHHhhhh--CCC------CCceEEEE--C--Ce-ecCCC-------------CCccccCCCc
Q 012759 162 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF--A--GK-QLEDG-------------RTLADYNIQK 215 (457)
Q Consensus 162 g~~~~~~v~~~~tV~~lK~~i~~~~--gip------~~~q~L~~--~--g~-~L~d~-------------~tL~~y~I~~ 215 (457)
...+++.|-.-|||.++|+||-+.. +.| ++..-|-+ . |+ .|.|. .||++|+|.+
T Consensus 201 ~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 280 (539)
T PF08337_consen 201 SEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPD 280 (539)
T ss_dssp STCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--T
T ss_pred CceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCC
Confidence 3558899999999999999997642 444 23334422 2 23 45442 4999999999
Q ss_pred CcEEEEEEEec
Q 012759 216 ESTLHLVLRLR 226 (457)
Q Consensus 216 ~~~i~l~~~~~ 226 (457)
|+++-++.+..
T Consensus 281 ga~vaLv~k~~ 291 (539)
T PF08337_consen 281 GATVALVPKQH 291 (539)
T ss_dssp TEEEEEEES--
T ss_pred CceEEEeeccc
Confidence 99999988754
No 222
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=61.92 E-value=50 Score=24.90 Aligned_cols=58 Identities=12% Similarity=0.220 Sum_probs=38.5
Q ss_pred EEEecC-CchHHHHHHHHhhhcC-----CCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 394 TLEVES-SDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 394 ~l~v~~-~~tV~~lK~~i~~~~g-----ip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
.+++++ ..||.+|+..+.++.. ......+..-|++...+ +.-+++|+.|-+.-+..||
T Consensus 18 ~~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~-----~~~l~dgDeVai~PPVsGG 81 (81)
T PRK11130 18 ALELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_pred eEEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCC-----CCCCCCCCEEEEeCCCCCC
Confidence 345543 5799999999998862 12233344456644333 3347889999998888887
No 223
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=60.55 E-value=29 Score=25.89 Aligned_cols=43 Identities=23% Similarity=0.313 Sum_probs=34.3
Q ss_pred eEEEcCCCCEEEEEec-CCchHHHHHHHHhhhcCCCCCCeEEEEC
Q 012759 383 IFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFA 426 (457)
Q Consensus 383 i~v~~~~g~~~~l~v~-~~~tV~~lK~~i~~~~gip~~~q~l~~~ 426 (457)
|.++.. |..+.+.++ .+.|..+|+.+|+++.+.+.....+.|.
T Consensus 3 vK~~~~-~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~ 46 (81)
T cd05992 3 VKVKYG-GEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYP 46 (81)
T ss_pred EEEEec-CCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEee
Confidence 344433 567888888 8999999999999999998767777774
No 224
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=59.89 E-value=16 Score=36.23 Aligned_cols=67 Identities=16% Similarity=0.290 Sum_probs=52.1
Q ss_pred eeEEEEccCCceEEEEeeCCccHHHHHHHHhhhcCCCCCCeEEEeC---Cccc-CCCccccccccCCCCeE
Q 012759 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQL-EDGRTLADYNIQKESTL 295 (457)
Q Consensus 229 ~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~---g~~L-~d~~tl~~~~i~~~~tl 295 (457)
-.|.|+..+|..+...++-++||.+|+.-|+..-.-.+..+.+++. -+.| ++++||++-|+.+...+
T Consensus 306 TsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 306 TSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred ceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 4577889999999999999999999999999887765554444443 3445 67899999999875443
No 225
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=59.83 E-value=25 Score=28.24 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=29.4
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCC
Q 012759 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38 (457)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~ 38 (457)
|+|-..+|++-++.|.-.-+-.+||+|+-+|.|++.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 678889999999999999999999999999999987
No 226
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=59.56 E-value=26 Score=26.69 Aligned_cols=37 Identities=19% Similarity=0.323 Sum_probs=30.9
Q ss_pred ccCCceEEEEeeC--CccHHHHHHHHhhhcCCCCCCeEEEe
Q 012759 235 TLTGKTITLEVES--SDTIDNVKAKIQDKEGIPPDQQRLIF 273 (457)
Q Consensus 235 ~~~g~~~~~~v~~--~~tV~~lK~~I~~~~~ip~~~q~L~~ 273 (457)
+.+|.++.+.+.+ +-+..+|++++..+++++ ...+.|
T Consensus 6 ty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKY 44 (81)
T cd06396 6 TYNGESQSFLVSDSENTTWASVEAMVKVSFGLN--DIQIKY 44 (81)
T ss_pred EECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC--cceeEE
Confidence 3678899999998 669999999999999998 445555
No 227
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=59.17 E-value=30 Score=27.34 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=34.0
Q ss_pred EEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEE
Q 012759 385 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 425 (457)
Q Consensus 385 v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~ 425 (457)
++...|.+..+.|+.+.+..+|+.++++..+++.. ..+-|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 34567889999999999999999999999999886 55544
No 228
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=57.75 E-value=16 Score=38.16 Aligned_cols=65 Identities=35% Similarity=0.512 Sum_probs=42.5
Q ss_pred CcEEEEEecCCCcHHHHHHHHhhh--cCCCCcc------ceEee----ccE-EccCC-------------Cccccccccc
Q 012759 10 GKTITLEVESSDTIDNVKAKIQDK--EGIPPDQ------QRLIF----AGK-QLEDG-------------RTLADYNIQK 63 (457)
Q Consensus 10 g~~~~~~v~~~dtv~~ik~ki~~~--~gip~~~------q~l~~----~g~-~L~~~-------------~tl~~y~i~~ 63 (457)
+..+++.|-..|||..+|+||-+. -+.|.++ -.|-| .|+ .|.|. +||++|+|.+
T Consensus 201 ~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 280 (539)
T PF08337_consen 201 SEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPD 280 (539)
T ss_dssp STCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--T
T ss_pred CceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCC
Confidence 467889999999999999999654 4455443 23333 233 35442 5899999999
Q ss_pred ccceeEEEEec
Q 012759 64 ESTLHLVLRLR 74 (457)
Q Consensus 64 ~sti~l~~~~~ 74 (457)
++++-++.+..
T Consensus 281 ga~vaLv~k~~ 291 (539)
T PF08337_consen 281 GATVALVPKQH 291 (539)
T ss_dssp TEEEEEEES--
T ss_pred CceEEEeeccc
Confidence 99999988654
No 229
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=56.75 E-value=46 Score=32.47 Aligned_cols=58 Identities=17% Similarity=0.233 Sum_probs=46.0
Q ss_pred EEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
.+++..+.||.+|-.. .+++++...+..||+.+..+ .-.++-+++|+.|.+.--.-||
T Consensus 9 ~~el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVpr~-~w~~t~LkeGD~IEII~~VgGG 66 (326)
T PRK11840 9 PRQVPAGLTIAALLAE----LGLAPKKVAVERNLEIVPRS-EYGQVALEEGDELEIVHFVGGG 66 (326)
T ss_pred EEecCCCCcHHHHHHH----cCCCCCeEEEEECCEECCHH-HcCccccCCCCEEEEEEEecCC
Confidence 4666788899988765 58899999999999999633 3455568889999998888887
No 230
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=56.11 E-value=17 Score=29.16 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=28.7
Q ss_pred eEEEeeCCcEEEEEeecCccHHHHHHHhhhhcCCCC
Q 012759 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 342 (457)
Q Consensus 307 i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~ 342 (457)
+++...+|.+.+++|....+-.++|+++..|+|++.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 566678999999999999999999999999999998
No 231
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=56.04 E-value=28 Score=37.19 Aligned_cols=183 Identities=17% Similarity=0.210 Sum_probs=99.3
Q ss_pred EEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEE----ecCccc--CCCCcccccccccCCcceEEE--Ee-ecceeeeEe
Q 012759 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI----FAGKQL--EDGRTLADYNIQKESTLHLVL--RL-RGGMQIFVK 158 (457)
Q Consensus 88 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~----~~g~~L--~d~~tl~~y~i~~~s~i~l~~--~~-~~~~~i~vk 158 (457)
.+.+.|+...+++.+|++|+...++|.+.-+++ -+|..+ .++.+|+.+ .++.+|.+.+ .+ .+...+.|.
T Consensus 878 ~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~~--~~~~~iTI~LG~~Lk~dE~~~KI~ 955 (1203)
T KOG4598|consen 878 FHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSGA--FQSCFITIKLGAPLKSDEKMMKII 955 (1203)
T ss_pred heeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhhh--cccceEEEEecCcCCCCceeeEEE
Confidence 467899999999999999999999999887776 234444 356677765 3555555543 11 122222222
Q ss_pred ec---c-C--c---eEEEeecCCChHHHHHHHHhhhh------CCCCCce--EEEE-----CCeecCCCC-CccccC--C
Q 012759 159 TL---T-G--K---TITLEVESSDTIDNVKAKIQDKE------GIPPDQQ--RLIF-----AGKQLEDGR-TLADYN--I 213 (457)
Q Consensus 159 ~~---~-g--~---~~~~~v~~~~tV~~lK~~i~~~~------gip~~~q--~L~~-----~g~~L~d~~-tL~~y~--I 213 (457)
.+ . . + .+..-+..+.||++.|..+-.+. +....-+ |+.- -|+.+-|.. ++.|-+ +
T Consensus 956 ~L~~l~NE~e~~k~l~e~V~~~~tT~~Q~K~ELi~~L~~i~~~~ltLS~~r~R~~~K~g~~Pg~~~lD~~~~~eD~~~~~ 1035 (1203)
T KOG4598|consen 956 LLDILENERENWKPLFELVVSQSTTIGQVKLELLRMLKEVYGEELTLSMVRLRELGKSGVGPGRAVLDPNDTLEDRSYNW 1035 (1203)
T ss_pred eehhhhccccCCcchhhhhhcCcccHHHHHHHHHHHHHHHhhcccchhHHHHHHHccCCcCCceEecCcchhhhhhhhhh
Confidence 22 1 1 1 12233578889999988765432 2222222 2221 144443332 233222 1
Q ss_pred CcC-------cEEEEEEEecCCeeEEEEccCCc-----eEEEEeeCCccHHHHHHHHhhhcCCCCCCeEEEe
Q 012759 214 QKE-------STLHLVLRLRGGMQIFVKTLTGK-----TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 273 (457)
Q Consensus 214 ~~~-------~~i~l~~~~~~~~~i~V~~~~g~-----~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~ 273 (457)
... +.+ ...++.....++|+-+.-. .+.-.+-+.+.+.+++..+.+-.|||.+...++.
T Consensus 1036 ~~~~~~qE~~deV-~~~k~~~sL~i~vRRW~Ps~~e~~pFQEV~Ld~~~~~E~Re~LS~ISgIPiD~l~~~K 1106 (1203)
T KOG4598|consen 1036 CSHLYLQEITDEV-MIGKPGESLPIMVRRWRPSTVEVNPFQEVLLDANAEVEFREALSKISGIPVDRLAITK 1106 (1203)
T ss_pred HHHHHHHHHHhhc-ccCCCCccchhhheeccccceecCCceeEEecCcchHHHHHHHHHhcCCchhhhhhhh
Confidence 000 000 0001111233444433211 2222334566899999999999999999766554
No 232
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=55.25 E-value=24 Score=26.60 Aligned_cols=37 Identities=11% Similarity=0.238 Sum_probs=32.5
Q ss_pred eEEEEeeCCccHHHHHHHHhhhcCCCCCCeEEEeCCc
Q 012759 240 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 276 (457)
Q Consensus 240 ~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~ 276 (457)
|+.+.+.++....+|..+|.++++++++.-.|-|...
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~~ 44 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRAP 44 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecCC
Confidence 4567778999999999999999999999999999653
No 233
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=54.96 E-value=34 Score=25.51 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=30.8
Q ss_pred CCceEEEEee-CCccHHHHHHHHhhhcCCCCCCeEEEeCC
Q 012759 237 TGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAG 275 (457)
Q Consensus 237 ~g~~~~~~v~-~~~tV~~lK~~I~~~~~ip~~~q~L~~~g 275 (457)
+|....+.+. ++.+..+|+++|+++++++.....+.|.+
T Consensus 8 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 8 GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 3567778888 88999999999999999876555555544
No 234
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=54.79 E-value=9.4 Score=29.98 Aligned_cols=18 Identities=50% Similarity=0.992 Sum_probs=16.8
Q ss_pred EEEecCcccCCCCccccc
Q 012759 118 RLIFAGKQLEDGRTLADY 135 (457)
Q Consensus 118 ~L~~~g~~L~d~~tl~~y 135 (457)
.|.|+|++|..+.+|++|
T Consensus 3 ~LW~aGK~l~~~k~l~dy 20 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY 20 (98)
T ss_pred eEEeccccccCCCcHHHh
Confidence 478999999999999999
No 235
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=53.23 E-value=40 Score=24.78 Aligned_cols=58 Identities=12% Similarity=0.223 Sum_probs=44.6
Q ss_pred eEEEEeeCCccHHHHHHHHhhhcC-C-CCCCeEEEeCCcccCCCccccccccCCCCeEEEEE
Q 012759 240 TITLEVESSDTIDNVKAKIQDKEG-I-PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 299 (457)
Q Consensus 240 ~~~~~v~~~~tV~~lK~~I~~~~~-i-p~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~ 299 (457)
.....+....||++|.+.+..+++ + ......+..||+...+ .-.+..+++++.+.++.
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~p 72 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILP 72 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEE
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEEC
Confidence 566788899999999999988774 1 2355777788988777 35667789999997764
No 236
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=53.09 E-value=65 Score=24.52 Aligned_cols=52 Identities=19% Similarity=0.408 Sum_probs=40.7
Q ss_pred CCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEE-ECCeEcCCCCcccccCCCCCCEEEEE
Q 012759 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 390 g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~-~~g~~L~d~~tL~~~~I~~~~~i~l~ 450 (457)
+..+.+.++++.||+++-+. .|||...--++ -||+...-+ |-+++|+.|.+.
T Consensus 22 ~~~~~~~~~~~~tvkd~IEs----LGVP~tEV~~i~vNG~~v~~~-----~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIES----LGVPHTEVGLILVNGRPVDFD-----YRLKDGDRVAVY 74 (81)
T ss_pred CCceEEecCCCCcHHHHHHH----cCCChHHeEEEEECCEECCCc-----ccCCCCCEEEEE
Confidence 45688899999999987654 69999998665 499988764 556678888775
No 237
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=53.04 E-value=98 Score=23.41 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=26.6
Q ss_pred CCcEEEEEecCCCcHHHHHHHHhhhcCCC
Q 012759 9 TGKTITLEVESSDTIDNVKAKIQDKEGIP 37 (457)
Q Consensus 9 ~g~~~~~~v~~~dtv~~ik~ki~~~~gip 37 (457)
+|..-++.|.+++|..+|-+.+.+|.++.
T Consensus 11 ~~~~kti~V~~~~t~~~Vi~~~l~k~~l~ 39 (87)
T cd01768 11 GGTYKTLRVSKDTTAQDVIQQLLKKFGLD 39 (87)
T ss_pred CccEEEEEECCCCCHHHHHHHHHHHhCCc
Confidence 36778899999999999999999999988
No 238
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=52.65 E-value=48 Score=24.88 Aligned_cols=40 Identities=20% Similarity=0.403 Sum_probs=33.0
Q ss_pred cCCcEEE-EEEcCCCCHHHHHHHHhhhhCCCCCCeEEEecC
Q 012759 84 LTGKTIT-LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 123 (457)
Q Consensus 84 ~~g~~~~-l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g 123 (457)
..|.... +.+.+..+..+|+++|+.+.+.+.....|.|..
T Consensus 8 ~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 8 YGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp ETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred ECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 3445544 899999999999999999999997778888764
No 239
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=52.61 E-value=46 Score=25.27 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=34.8
Q ss_pred CCEEEEEecCCchHHHHHHHHhhhcCCC--CCCeEEEE------CCeEcCCCC
Q 012759 390 GKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLIF------AGKQLEDGR 434 (457)
Q Consensus 390 g~~~~l~v~~~~tV~~lK~~i~~~~gip--~~~q~l~~------~g~~L~d~~ 434 (457)
+...++.|+.++|..++-..+.++.+++ +.+..|+- ..+.|+|+.
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e 64 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGLERLLLPDE 64 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceEEEEeCCCC
Confidence 6678999999999999999999999998 55555542 234666554
No 240
>PRK01777 hypothetical protein; Validated
Probab=52.42 E-value=1.1e+02 Score=24.19 Aligned_cols=65 Identities=8% Similarity=0.085 Sum_probs=41.6
Q ss_pred ceeeEEEcC-CC--CEEEEEecCCchHHHHHHHHhhhcCCCCC--C-----eEEEECCeEcCCCCcccccCCCCCCEEEE
Q 012759 380 GMQIFVKTL-TG--KTITLEVESSDTIDNVKAKIQDKEGIPPD--Q-----QRLIFAGKQLEDGRTLADYNIQKESTLHL 449 (457)
Q Consensus 380 ~~~i~v~~~-~g--~~~~l~v~~~~tV~~lK~~i~~~~gip~~--~-----q~l~~~g~~L~d~~tL~~~~I~~~~~i~l 449 (457)
.|+|.|.+. .. ....+++++++||.++-... ||+.. . -.+.-+|+...-+.. +++|+.|.+
T Consensus 3 ~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~s----gi~~~~pei~~~~~~vgI~Gk~v~~d~~-----L~dGDRVeI 73 (95)
T PRK01777 3 KIRVEVVYALPERQYLQRLTLQEGATVEEAIRAS----GLLELRTDIDLAKNKVGIYSRPAKLTDV-----LRDGDRVEI 73 (95)
T ss_pred eeEEEEEEECCCceEEEEEEcCCCCcHHHHHHHc----CCCccCcccccccceEEEeCeECCCCCc-----CCCCCEEEE
Confidence 355555432 22 24678899999999987765 55555 2 255567887765444 556888887
Q ss_pred EEec
Q 012759 450 VLRL 453 (457)
Q Consensus 450 ~~r~ 453 (457)
.-.|
T Consensus 74 yrPL 77 (95)
T PRK01777 74 YRPL 77 (95)
T ss_pred ecCC
Confidence 6544
No 241
>PRK07440 hypothetical protein; Provisional
Probab=52.28 E-value=63 Score=23.73 Aligned_cols=62 Identities=16% Similarity=0.277 Sum_probs=41.1
Q ss_pred ceeeEEEeeCCcEEEEEeecCccHHHHHHHhhhhcCCCCCCceEEecCeeccCCCcccccccccCceEEEEE
Q 012759 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 375 (457)
Q Consensus 304 ~~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~l~l~~ 375 (457)
.|.|. .||+. .++.++.|+.+|-+ ..++++..--...++..++-+. +.+.-+..++.+.++.
T Consensus 4 ~m~i~---vNG~~--~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r~~-w~~~~L~~gD~IEIv~ 65 (70)
T PRK07440 4 PITLQ---VNGET--RTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHRQF-WEQTQVQPGDRLEIVT 65 (70)
T ss_pred ceEEE---ECCEE--EEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCHHH-cCceecCCCCEEEEEE
Confidence 34553 46765 45567889998844 5567766555557887775433 5666788888888764
No 242
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=51.96 E-value=28 Score=28.65 Aligned_cols=54 Identities=20% Similarity=0.474 Sum_probs=36.5
Q ss_pred EecC-CchHHHHHHHHhhhc----CCCCC------CeEEEEC----------------C-eEc---CCCCcccccCCCCC
Q 012759 396 EVES-SDTIDNVKAKIQDKE----GIPPD------QQRLIFA----------------G-KQL---EDGRTLADYNIQKE 444 (457)
Q Consensus 396 ~v~~-~~tV~~lK~~i~~~~----gip~~------~q~l~~~----------------g-~~L---~d~~tL~~~~I~~~ 444 (457)
.|+. +.||.+|++.+.+.. |+||- ..++++. . -.| +++.||.++||.+.
T Consensus 21 ~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nE 100 (122)
T PF10209_consen 21 NVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENE 100 (122)
T ss_pred cCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCcc
Confidence 4776 889999988877664 56553 3334331 1 245 56789999999998
Q ss_pred CEEEE
Q 012759 445 STLHL 449 (457)
Q Consensus 445 ~~i~l 449 (457)
.-|-+
T Consensus 101 TEiSf 105 (122)
T PF10209_consen 101 TEISF 105 (122)
T ss_pred ceeee
Confidence 87654
No 243
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=51.29 E-value=48 Score=25.28 Aligned_cols=43 Identities=28% Similarity=0.365 Sum_probs=33.3
Q ss_pred EEEEEecCCchHHHHHHHHhhhcCC--CCCCeEEE-E-----CCeEcCCCC
Q 012759 392 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLI-F-----AGKQLEDGR 434 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~gi--p~~~q~l~-~-----~g~~L~d~~ 434 (457)
..++.|++++|+.++-.++.+++++ ++.+..|+ + ..+.|.++.
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~E 68 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDDE 68 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTTS
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCCC
Confidence 7899999999999999999999999 45555663 2 134666554
No 244
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=51.19 E-value=34 Score=32.23 Aligned_cols=70 Identities=16% Similarity=0.266 Sum_probs=56.1
Q ss_pred eeeEEEeeCCcEEEEEeecCccHHHHHHHhhhhcCCCCCCceEE--ecCeec---cCCCcccccccccCceEEEE
Q 012759 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLV 374 (457)
Q Consensus 305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L---~d~~~l~~~~i~~~~~l~l~ 374 (457)
..+.|+..+|.+++-.++...|..+++..+.-+.+.-.+--.|. |.-..+ +-.++|..+++-+.+++.+.
T Consensus 211 crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil~ 285 (290)
T KOG2689|consen 211 CRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLILE 285 (290)
T ss_pred eEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheecc
Confidence 46889999999999999999999999999999988777554554 444444 33588888898888877765
No 245
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=50.68 E-value=52 Score=23.55 Aligned_cols=60 Identities=13% Similarity=0.299 Sum_probs=39.3
Q ss_pred cCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEecCcccCCCCcccccccccCCcceEEEEeec
Q 012759 84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (457)
Q Consensus 84 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~~ 151 (457)
.+|+.+.+ + ..|+.+|.+.+ ++++....+-.||+.+.. ....+.-+++|+.|.+.....|
T Consensus 5 ~Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~~-~~~~~~~L~dgD~Ieiv~~V~G 64 (65)
T PRK06488 5 VNGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVHK-EARAQFVLHEGDRIEILSPMQG 64 (65)
T ss_pred ECCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcCH-HHcCccccCCCCEEEEEEeccC
Confidence 46777666 3 35898888765 566655566788887752 2334566788998887654433
No 246
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=50.26 E-value=94 Score=23.22 Aligned_cols=58 Identities=14% Similarity=0.228 Sum_probs=39.5
Q ss_pred eEEEeecCC-ChHHHHHHHHhhhhC-CC--CCceEEEECCeecCCCCCccccCCCcCcEEEEEEEec
Q 012759 164 TITLEVESS-DTIDNVKAKIQDKEG-IP--PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (457)
Q Consensus 164 ~~~~~v~~~-~tV~~lK~~i~~~~g-ip--~~~q~L~~~g~~L~d~~tL~~y~I~~~~~i~l~~~~~ 226 (457)
...+++... .||.+|++.+..+.+ +- .....+..+++...+ +.-+++|+.|.++..-.
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~Ppvs 78 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVS 78 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCC
Confidence 356778766 899999999988763 11 122345567776654 56788899998775443
No 247
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=50.15 E-value=50 Score=23.66 Aligned_cols=60 Identities=20% Similarity=0.385 Sum_probs=40.3
Q ss_pred CCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEecCcccCCCCcccccccccCCcceEEEEeec
Q 012759 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (457)
Q Consensus 85 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~~ 151 (457)
+|+.+ +++...||.+|.+++ +++++.-.+..+|+.+..+ .-.++-+++|+.|.+.....|
T Consensus 5 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~~v~G 64 (65)
T cd00565 5 NGEPR--EVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVTAVGG 64 (65)
T ss_pred CCeEE--EcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccC
Confidence 44444 456678999888765 4677777888899887543 233455788998887654443
No 248
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=49.80 E-value=38 Score=36.41 Aligned_cols=44 Identities=23% Similarity=0.448 Sum_probs=39.0
Q ss_pred ccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEecCccc
Q 012759 83 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 126 (457)
Q Consensus 83 ~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L 126 (457)
..++..+.+-++++.|+..+++.|....|+|...|.|+|.|...
T Consensus 321 ~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 321 MVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLS 364 (732)
T ss_pred eccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCcc
Confidence 34567788999999999999999999999999999999997553
No 249
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.39 E-value=25 Score=33.96 Aligned_cols=56 Identities=13% Similarity=0.195 Sum_probs=43.2
Q ss_pred EEeecCccHHHHHHHhhhhcCCCCCCceEEe---cCe-----eccCCCcccccccccCceEEEE
Q 012759 319 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGK-----QLEDGRTLADYNIQKESTLHLV 374 (457)
Q Consensus 319 l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~---~g~-----~L~d~~~l~~~~i~~~~~l~l~ 374 (457)
..+...-||.|+|.++..+-|+.+.+++|++ .|+ ..+.+..|.+|+|+.|+.+.+.
T Consensus 352 ~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 352 GLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred eEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 4556677999999999999999999999984 222 2455677788888887776654
No 250
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=49.22 E-value=45 Score=25.23 Aligned_cols=48 Identities=21% Similarity=0.471 Sum_probs=34.2
Q ss_pred chHHHHHHHHhhhcCCCCCCeEEEE--CCeEcCCCCcccccCCCCCCEEEEEE
Q 012759 401 DTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 401 ~tV~~lK~~i~~~~gip~~~q~l~~--~g~~L~d~~tL~~~~I~~~~~i~l~~ 451 (457)
.+..||+.+.+++.+++.+..+|+. +|..++|+.-+..+ +..|..+.+
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~tL---p~nT~lm~L 70 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQTL---PDNTVLMLL 70 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCCS---SSSEEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhhC---CCCCEEEEE
Confidence 6899999999999999987777776 79999877433222 234555544
No 251
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=49.20 E-value=1.2e+02 Score=23.12 Aligned_cols=61 Identities=11% Similarity=0.255 Sum_probs=39.8
Q ss_pred ceEEEeecCCChHHHHHHHHhhhhCC------C-----CCceEEEECCeecCCCCCccccCCCcCcEEEEEEEecC
Q 012759 163 KTITLEVESSDTIDNVKAKIQDKEGI------P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (457)
Q Consensus 163 ~~~~~~v~~~~tV~~lK~~i~~~~gi------p-----~~~q~L~~~g~~L~d~~tL~~y~I~~~~~i~l~~~~~~ 227 (457)
....++++ ..||.+|.+.+.+++.- . .....+..+|+....+.. .-+++|++|.++...++
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsG 87 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSG 87 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcC
Confidence 34667776 88999999999876531 1 122445567776654422 57889999988765443
No 252
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=48.55 E-value=58 Score=24.81 Aligned_cols=33 Identities=21% Similarity=0.253 Sum_probs=29.1
Q ss_pred eeCCcEEEEEeec--CccHHHHHHHhhhhcCCCCC
Q 012759 311 TLTGKTITLEVES--SDTIDNVKAKIQDKEGIPPD 343 (457)
Q Consensus 311 ~~~g~~~~l~v~~--~~Tv~~lK~~I~~~~~ip~~ 343 (457)
+++|.+..+.+++ +.|..+|++.|...+++++-
T Consensus 6 ty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~~f 40 (81)
T cd06396 6 TYNGESQSFLVSDSENTTWASVEAMVKVSFGLNDI 40 (81)
T ss_pred EECCeEEEEEecCCCCCCHHHHHHHHHHHhCCCcc
Confidence 4788999999999 77999999999999999933
No 253
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=48.50 E-value=66 Score=22.99 Aligned_cols=57 Identities=14% Similarity=0.315 Sum_probs=39.5
Q ss_pred eCCcEEEEEeecCccHHHHHHHhhhhcCCCCCCceEEecCeeccCCCcccccccccCceEEEEE
Q 012759 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 375 (457)
Q Consensus 312 ~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~l~l~~ 375 (457)
.||+.+ ++.++.|+.++- ...++++..-.+..+|..++... ..+.-++.++.+.+..
T Consensus 5 vNG~~~--~~~~~~tl~~lL----~~l~~~~~~vav~vNg~iv~r~~-~~~~~l~~gD~vei~~ 61 (66)
T PRK05659 5 LNGEPR--ELPDGESVAALL----AREGLAGRRVAVEVNGEIVPRSQ-HASTALREGDVVEIVH 61 (66)
T ss_pred ECCeEE--EcCCCCCHHHHH----HhcCCCCCeEEEEECCeEeCHHH-cCcccCCCCCEEEEEE
Confidence 567755 556788999884 44678877666668887775443 4455578888888764
No 254
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=48.42 E-value=60 Score=25.67 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=34.9
Q ss_pred EEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEec
Q 012759 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 122 (457)
Q Consensus 81 vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~ 122 (457)
++..+|.+..+.|+.+.+..+|+.++.+..+++.. ..|.|.
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky~ 57 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKYQ 57 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEEE
Confidence 45788999999999999999999999999988775 555543
No 255
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=47.34 E-value=18 Score=28.43 Aligned_cols=28 Identities=39% Similarity=0.788 Sum_probs=22.1
Q ss_pred eEeeccEEccCCCcccccccccccceeEE
Q 012759 42 RLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (457)
Q Consensus 42 ~l~~~g~~L~~~~tl~~y~i~~~sti~l~ 70 (457)
.|.|.|++|.++.+|.+| +-.|.--.++
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNEKtKii 30 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNEKTKII 30 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCcceeEE
Confidence 489999999999999999 6555544444
No 256
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=47.33 E-value=34 Score=27.48 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=32.9
Q ss_pred EEecCCchHHHHHHHHhhhcCCCCCC-eEEEECCeEcCCCCcccc
Q 012759 395 LEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLAD 438 (457)
Q Consensus 395 l~v~~~~tV~~lK~~i~~~~gip~~~-q~l~~~g~~L~d~~tL~~ 438 (457)
+-|+.+.||+++...|..+..+++++ ..|+.++..+..+.++++
T Consensus 37 fLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~e 81 (104)
T PF02991_consen 37 FLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGE 81 (104)
T ss_dssp EEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHH
T ss_pred EEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHH
Confidence 34799999999999999999998876 455557766667777765
No 257
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=46.74 E-value=63 Score=24.58 Aligned_cols=31 Identities=29% Similarity=0.280 Sum_probs=26.5
Q ss_pred EEEEEeecCccHHHHHHHhhhhcCCCCCCce
Q 012759 316 TITLEVESSDTIDNVKAKIQDKEGIPPDQQR 346 (457)
Q Consensus 316 ~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~ 346 (457)
..++.+++++|+.++-+++..+++++.+...
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~ 48 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLAEDPSD 48 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTSSSGGG
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCCC
Confidence 6779999999999999999999999444433
No 258
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=46.42 E-value=67 Score=24.58 Aligned_cols=45 Identities=27% Similarity=0.371 Sum_probs=34.7
Q ss_pred CCCEEEEEecCCchHHHHHHHHhhhcCCCC--CCeEEE--E-CC--eEcCCC
Q 012759 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLI--F-AG--KQLEDG 433 (457)
Q Consensus 389 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~--~~q~l~--~-~g--~~L~d~ 433 (457)
++...++.|++++|..++-..+.++.+++. ....|+ . +| +.|+++
T Consensus 14 ~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~~~~~er~L~~~ 65 (90)
T smart00314 14 GGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVLPDGKERVLPDD 65 (90)
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEeCCcEEEEeCCC
Confidence 466789999999999999999999999975 455554 2 34 566654
No 259
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=46.19 E-value=53 Score=25.14 Aligned_cols=38 Identities=26% Similarity=0.355 Sum_probs=31.1
Q ss_pred eEEEEc-CCCcEEEEEecCCCcHHHHHHHHhhhcCCCCc
Q 012759 2 QIFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 39 (457)
Q Consensus 2 ~i~~~~-~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~ 39 (457)
.||... .++..-++.|.+++|+.+|-..+.++.++..+
T Consensus 6 rV~~~~~~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~ 44 (90)
T smart00314 6 RVYVDDLPGGTYKTLRVSSRTTARDVIQQLLEKFHLTDD 44 (90)
T ss_pred EEecccCCCCcEEEEEECCCCCHHHHHHHHHHHhCCCCC
Confidence 355544 45678889999999999999999999998753
No 260
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=45.69 E-value=1.6e+02 Score=23.68 Aligned_cols=73 Identities=27% Similarity=0.322 Sum_probs=47.5
Q ss_pred ceEEEEEccC-CcEEEEEEcCCCCHHHHHHHHhhh----hC--CCCC-CeEEEecCcc--cCCCCcccccc-----cccC
Q 012759 76 GMQIFVKTLT-GKTITLEVESSDTIDNVKAKIQDK----EG--IPPD-QQRLIFAGKQ--LEDGRTLADYN-----IQKE 140 (457)
Q Consensus 76 ~~~i~vk~~~-g~~~~l~v~~~~tV~~lK~~i~~~----~g--ip~~-~q~L~~~g~~--L~d~~tl~~y~-----i~~~ 140 (457)
.+.|.|...+ ...+++.+++++|+.++.+.+-.+ .+ -+++ +-.|--.|+. |..+..|.+|. ++.+
T Consensus 17 ~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~ 96 (108)
T smart00144 17 KILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNG 96 (108)
T ss_pred eEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcC
Confidence 3444454433 356899999999999998887665 11 2233 4456666755 55666777764 5677
Q ss_pred CcceEEEE
Q 012759 141 STLHLVLR 148 (457)
Q Consensus 141 s~i~l~~~ 148 (457)
..++|.+.
T Consensus 97 ~~~~L~L~ 104 (108)
T smart00144 97 REPHLVLM 104 (108)
T ss_pred CCceEEEE
Confidence 78887764
No 261
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=45.21 E-value=92 Score=24.55 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=27.9
Q ss_pred CCCCEEEEEecCCchHHHHHHHHhhhcCCCCC
Q 012759 388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 419 (457)
Q Consensus 388 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~ 419 (457)
.++.-.++.++.++||+|+-..+..+..++..
T Consensus 10 ~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~ 41 (97)
T cd01775 10 SDGTFTTLSCPLNTTVSELIPQLAKKFYLPSG 41 (97)
T ss_pred cCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCC
Confidence 45556889999999999999999999988873
No 262
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=44.96 E-value=1.3e+02 Score=23.12 Aligned_cols=57 Identities=9% Similarity=0.187 Sum_probs=40.4
Q ss_pred eCCcEEEEEeecCccHHHHHHHhhhhcCCCCCCceEEecCeeccCCCcccccccccCceEEEEE
Q 012759 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 375 (457)
Q Consensus 312 ~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~l~l~~ 375 (457)
.||+.+.+ +++.|+.+|=+ .+++|+..--+..+|..++.+. +.+.-+..++.+.++.
T Consensus 23 VNG~~~~~--~~~~tl~~LL~----~l~~~~~~vAVevNg~iVpr~~-w~~t~L~egD~IEIv~ 79 (84)
T PRK06083 23 INDQSIQV--DISSSLAQIIA----QLSLPELGCVFAINNQVVPRSE-WQSTVLSSGDAISLFQ 79 (84)
T ss_pred ECCeEEEc--CCCCcHHHHHH----HcCCCCceEEEEECCEEeCHHH-cCcccCCCCCEEEEEE
Confidence 56776654 56788888844 3577776555668888874433 6777888999988874
No 263
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=44.48 E-value=71 Score=25.76 Aligned_cols=40 Identities=8% Similarity=0.216 Sum_probs=34.1
Q ss_pred ceEEEeecCCChHHHHHHHHhhhhCCCCCceEEEECCeec
Q 012759 163 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 202 (457)
Q Consensus 163 ~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L 202 (457)
+.-.+.|++++|++.+...+.+..++++..+-++|-+..-
T Consensus 45 K~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sF 84 (116)
T KOG3439|consen 45 KKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSF 84 (116)
T ss_pred ecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCcc
Confidence 3446789999999999999999999999999988866544
No 264
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=44.23 E-value=51 Score=27.17 Aligned_cols=56 Identities=21% Similarity=0.484 Sum_probs=38.6
Q ss_pred ecC-CChHHHHHHHHhhhh----CCCC------CceEEEEC-----------------Ceec---CCCCCccccCCCcCc
Q 012759 169 VES-SDTIDNVKAKIQDKE----GIPP------DQQRLIFA-----------------GKQL---EDGRTLADYNIQKES 217 (457)
Q Consensus 169 v~~-~~tV~~lK~~i~~~~----gip~------~~q~L~~~-----------------g~~L---~d~~tL~~y~I~~~~ 217 (457)
|+. +.||.+|++.+.+.. |+|| +..++.+. ...| +++.+|.++||.+..
T Consensus 22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nET 101 (122)
T PF10209_consen 22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENET 101 (122)
T ss_pred CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccc
Confidence 665 889999988876643 4543 22233321 1356 678899999999999
Q ss_pred EEEEEEE
Q 012759 218 TLHLVLR 224 (457)
Q Consensus 218 ~i~l~~~ 224 (457)
.|.++..
T Consensus 102 EiSfF~~ 108 (122)
T PF10209_consen 102 EISFFNM 108 (122)
T ss_pred eeeeeCH
Confidence 9987654
No 265
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=43.64 E-value=55 Score=25.67 Aligned_cols=59 Identities=19% Similarity=0.340 Sum_probs=38.4
Q ss_pred EecCCchHHHHHHHHhhhcCCCCCCeEEEEC-Ce------EcCCCC---cc--cccCCCCCCEEEEEEecCCC
Q 012759 396 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GK------QLEDGR---TL--ADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 396 ~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~-g~------~L~d~~---tL--~~~~I~~~~~i~l~~r~~GG 456 (457)
++....||.+|-..+++.. |...-+++.. |+ .|-|+. .+ .++-+++|+.|.+.-.+-||
T Consensus 24 ~~~~~~tV~dll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P~v~GG 94 (94)
T cd01764 24 DGEKPVTVGDLLDYVASNL--LEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFISTLHGG 94 (94)
T ss_pred cCCCCCcHHHHHHHHHHhC--chhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEECCCCCC
Confidence 3436789999999999886 3333344432 21 222222 23 35779999999998888887
No 266
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=43.37 E-value=35 Score=27.77 Aligned_cols=58 Identities=14% Similarity=0.146 Sum_probs=40.2
Q ss_pred EEEecCCchHHHHHHHHhhhcCCCCCCeE-EEECCeEcCCCCcccc----cCCCCCCEEEEEEe
Q 012759 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLAD----YNIQKESTLHLVLR 452 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~-l~~~g~~L~d~~tL~~----~~I~~~~~i~l~~r 452 (457)
-+-|+.+.||+++...|..+.++++++-. |+.++.....+.++++ |+- ++.-|++...
T Consensus 44 KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd-~DGfLyl~Ys 106 (112)
T cd01611 44 KYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEHKD-EDGFLYMTYS 106 (112)
T ss_pred eEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHHHHHhCC-CCCEEEEEEe
Confidence 34599999999999999999999988744 4446644455555543 333 3556777654
No 267
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=42.38 E-value=1.6e+02 Score=22.69 Aligned_cols=61 Identities=23% Similarity=0.375 Sum_probs=43.9
Q ss_pred EEEEEecCCchHHHHHHHHhhhc-C--CCC--C-CeEEEECC--eEcCCCCcccccCCCCCCEEEEEEe
Q 012759 392 TITLEVESSDTIDNVKAKIQDKE-G--IPP--D-QQRLIFAG--KQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~-g--ip~--~-~q~l~~~g--~~L~d~~tL~~~~I~~~~~i~l~~r 452 (457)
...+-|+..+|+.++=++++... | +++ . ..++.++| ..+..+.++++.||.+-+.|.+..+
T Consensus 16 ~~Lv~VDt~dTmdqVA~k~A~HsVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~vev~~~ 84 (85)
T PF06234_consen 16 LQLVPVDTEDTMDQVAAKVAHHSVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWVEVRFE 84 (85)
T ss_dssp EEEEEEETT-BHHHHHHHHHTTTTTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEEEEEEE
T ss_pred EEEEEeCCCCcHHHHHHHHhhhhcceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEEEEEEc
Confidence 46678999999999999998774 3 333 2 45677888 8999999999999999999988653
No 268
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=42.32 E-value=1.7e+02 Score=25.08 Aligned_cols=111 Identities=23% Similarity=0.400 Sum_probs=71.7
Q ss_pred EEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCccccccccccc----ceeEEEEecC-ceEEEEEccCC
Q 012759 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES----TLHLVLRLRG-GMQIFVKTLTG 86 (457)
Q Consensus 12 ~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~s----ti~l~~~~~~-~~~i~vk~~~g 86 (457)
.|+-+.-.-+|.+.+=.+|.+-.|| .+.+.+|..|... --|+...+. .-+-++...+ .+.+.|+. |
T Consensus 5 IfP~R~L~peTtEklLN~l~~i~GI----~R~vi~Gp~LPk~---VpyGPa~G~pv~h~~Rk~I~V~g~~veL~V~v--G 75 (153)
T PF02505_consen 5 IFPHRLLKPETTEKLLNELYSIEGI----RRVVIHGPRLPKT---VPYGPARGTPVNHPDRKVINVGGEEVELTVKV--G 75 (153)
T ss_pred EechhcCCHHHHHHHHHHHhccCCE----EEEEEECCCCCCC---CCCCCCCCCcCCCCcceEEEECCEEEEEEEEE--e
Confidence 3555666678999999999887776 5788889888642 234444333 2233333332 35555542 2
Q ss_pred cEEEEEEcC-CCCHHHHHHHHhhhhCCCCCCeEEEecCcccCCCCcccccc
Q 012759 87 KTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136 (457)
Q Consensus 87 ~~~~l~v~~-~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~ 136 (457)
.+.++++. .+.+..+++...+...++.+ +..|+-+....|++||-
T Consensus 76 -ri~lele~~~~~ie~I~~iCee~lpf~y~----i~~G~f~r~~~TvtDY~ 121 (153)
T PF02505_consen 76 -RIILELEDEEDVIEKIREICEEVLPFGYD----IKEGKFIRTKPTVTDYA 121 (153)
T ss_pred -EEEEEecCcHHHHHHHHHHHHHhCCCceE----eeeeEEeccCCchhhhh
Confidence 46677877 67777777777665543332 23599999999999983
No 269
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=41.94 E-value=34 Score=26.83 Aligned_cols=59 Identities=19% Similarity=0.316 Sum_probs=34.5
Q ss_pred EeecCCChHHHHHHHHhhhhCCCCCceEEEECC-------eecCCC---CCc--cccCCCcCcEEEEEEEecC
Q 012759 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-------KQLEDG---RTL--ADYNIQKESTLHLVLRLRG 227 (457)
Q Consensus 167 ~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g-------~~L~d~---~tL--~~y~I~~~~~i~l~~~~~~ 227 (457)
++++...||.+|-+.+.+.+ |....+++..+ ..|-++ +.+ .++-+++|++|.++....+
T Consensus 23 ~~~~~~~tV~dll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P~v~G 93 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNL--LEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFISTLHG 93 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhC--chhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEECCCCC
Confidence 44446679999999998766 22233333221 122122 233 3577899999988765443
No 270
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=40.80 E-value=1.1e+02 Score=31.68 Aligned_cols=71 Identities=14% Similarity=0.151 Sum_probs=53.8
Q ss_pred eEEEEccCCceEEEEeeCCccHHHHHHHHhhhcCC------CCCCeEEEe-CCcccCCCccccccccCCCCeEEEEEee
Q 012759 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI------PPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRL 301 (457)
Q Consensus 230 ~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~i------p~~~q~L~~-~g~~L~d~~tl~~~~i~~~~tl~l~~~~ 301 (457)
+++|... .+.+.+.+..+-.|.++--.|.+..+- ++....|.- +|..++.++||.+.+|.+|+.++|....
T Consensus 4 RVtV~~~-~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~~ 81 (452)
T TIGR02958 4 RVTVLAG-RRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPAS 81 (452)
T ss_pred EEEEeeC-CeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeCC
Confidence 3445543 345888888999999999888887753 233455553 6789999999999999999999998643
No 271
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=40.52 E-value=1.5e+02 Score=22.86 Aligned_cols=52 Identities=17% Similarity=0.249 Sum_probs=30.0
Q ss_pred CccHHHHHHHHhh-hcCCCC-C---CeEEEeCC-c---ccCCCccccccccCCCCeEEEEE
Q 012759 248 SDTIDNVKAKIQD-KEGIPP-D---QQRLIFAG-K---QLEDGRTLADYNIQKESTLHLVL 299 (457)
Q Consensus 248 ~~tV~~lK~~I~~-~~~ip~-~---~q~L~~~g-~---~L~d~~tl~~~~i~~~~tl~l~~ 299 (457)
..|++++-..+.+ +.|+.. + ...++|.. . .-...++|+++||.+|+.|.+..
T Consensus 8 ~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~D 68 (87)
T PF14732_consen 8 KMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVDD 68 (87)
T ss_dssp T-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEEE
T ss_pred hCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEEE
Confidence 4499999888654 677533 2 34455543 3 34558899999999999986544
No 272
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=40.50 E-value=69 Score=25.81 Aligned_cols=40 Identities=8% Similarity=0.216 Sum_probs=33.8
Q ss_pred cEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEc
Q 012759 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 50 (457)
Q Consensus 11 ~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L 50 (457)
|.-.+.|.+++|+..+-..+++..+++++.|-.+|-....
T Consensus 45 K~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sF 84 (116)
T KOG3439|consen 45 KKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSF 84 (116)
T ss_pred ecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCcc
Confidence 4556789999999999999999999999998877755544
No 273
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=40.07 E-value=1.2e+02 Score=22.13 Aligned_cols=57 Identities=19% Similarity=0.397 Sum_probs=39.4
Q ss_pred eCCcEEEEEeecCccHHHHHHHhhhhcCCCCCCceEEecCeeccCCCcccccccccCceEEEEE
Q 012759 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 375 (457)
Q Consensus 312 ~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~l~l~~ 375 (457)
.||+. ++++...|+.|| ....++++..--...+|..+..+. ..+..++.++.+.++.
T Consensus 7 ~ng~~--~e~~~~~tv~dL----L~~l~~~~~~vav~vNg~iVpr~~-~~~~~l~~gD~ievv~ 63 (68)
T COG2104 7 LNGKE--VEIAEGTTVADL----LAQLGLNPEGVAVAVNGEIVPRSQ-WADTILKEGDRIEVVR 63 (68)
T ss_pred ECCEE--EEcCCCCcHHHH----HHHhCCCCceEEEEECCEEccchh-hhhccccCCCEEEEEE
Confidence 34544 556667999999 566778887655668888876443 5666677778777764
No 274
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=39.76 E-value=93 Score=22.16 Aligned_cols=61 Identities=16% Similarity=0.352 Sum_probs=39.8
Q ss_pred cCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEecCcccCCCCcccccccccCCcceEEEEeec
Q 012759 84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (457)
Q Consensus 84 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~~ 151 (457)
.+|+.+. ++...|+.++.+.+ ++++..-.+..+|+.+..+ ...++-+++|+.|.+.....|
T Consensus 3 iNg~~~~--~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~~V~G 63 (64)
T TIGR01683 3 VNGEPVE--VEDGLTLAALLESL----GLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVTFVGG 63 (64)
T ss_pred ECCeEEE--cCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccC
Confidence 3455544 46677899888764 5666667777888877422 233456888998887654433
No 275
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=39.60 E-value=90 Score=24.03 Aligned_cols=56 Identities=21% Similarity=0.258 Sum_probs=40.5
Q ss_pred EEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEe-------cCcccCCCCcccc
Q 012759 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLAD 134 (457)
Q Consensus 79 i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~-------~g~~L~d~~tl~~ 134 (457)
|.|-..+|..-.+.|+...|++++-+.+..+.+...+.-.-.+ -.+.++|+..+-+
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~vvd 67 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHELVVE 67 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHHHHH
Confidence 5555688999999999999999999999999887654432221 1355666654444
No 276
>PF10787 YfmQ: Uncharacterised protein from bacillus cereus group; InterPro: IPR019723 This entry represents proteins conserved in the Bacillus cereus group. Several members are called YfmQ but the function is not known.
Probab=39.21 E-value=77 Score=26.72 Aligned_cols=87 Identities=22% Similarity=0.314 Sum_probs=60.2
Q ss_pred CCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCc------------ccccccccccceeEEEEecCceEEEEEccCC
Q 012759 19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT------------LADYNIQKESTLHLVLRLRGGMQIFVKTLTG 86 (457)
Q Consensus 19 ~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~t------------l~~y~i~~~sti~l~~~~~~~~~i~vk~~~g 86 (457)
|+-.|+.+-+|.+=+.....+.=..-++|+.|++... |+.|.+.+++.-.+.-+-.++..+.|++-.|
T Consensus 23 Pt~vVe~liskfe~H~kL~~~~~tVti~G~~Lege~K~~~I~~FNeAiFLekyY~~P~~e~~~l~pe~~gtPlvI~tKkG 102 (149)
T PF10787_consen 23 PTSVVEWLISKFELHPKLDEENTTVTIDGKRLEGEDKSQIIDQFNEAIFLEKYYIPPGNEERYLHPENSGTPLVIDTKKG 102 (149)
T ss_pred cHHHHHHHHHHheecccccccceEEEECCeecCchHHHHHHHHHhHHHHHHhhccCCCCcccccCcccCCCCEEEEeccC
Confidence 6778888888887777777777788999999987532 3446666655533333334567788888887
Q ss_pred cE-EEEEEcCC-CCHHHHHHH
Q 012759 87 KT-ITLEVESS-DTIDNVKAK 105 (457)
Q Consensus 87 ~~-~~l~v~~~-~tV~~lK~~ 105 (457)
+. +.+-+.+- |-|.-+|+.
T Consensus 103 K~dv~f~vYsYdDHVDVVKQy 123 (149)
T PF10787_consen 103 KKDVTFFVYSYDDHVDVVKQY 123 (149)
T ss_pred cceeEEEEEecccHHHHHHHh
Confidence 65 78887764 346666654
No 277
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=38.81 E-value=2.6e+02 Score=24.21 Aligned_cols=140 Identities=18% Similarity=0.180 Sum_probs=69.8
Q ss_pred cccCCCCeEEEEEeecCceeeEEEeeCCcEEEEEe-----ecCccHHHHHHHhhhhcCCCCCCceEEecCeeccCCCccc
Q 012759 287 YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEV-----ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 361 (457)
Q Consensus 287 ~~i~~~~tl~l~~~~~~~~~i~i~~~~g~~~~l~v-----~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~l~ 361 (457)
|-+.+||.|.+...-.+.++-.+.....-++++.. -.+.|+.++++.|++++.
T Consensus 1 Y~l~pGD~l~i~v~~~~~~~~~~~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~---------------------- 58 (165)
T TIGR03027 1 YVIGPGDSLNINVWRNPELSGSVPVRPDGKITTPLVGDLVASGKTPTQLARDIEEKLA---------------------- 58 (165)
T ss_pred CCcCCCCEEEEEEcCCcccccceEECCCCeEeecccCeEEECCCCHHHHHHHHHHHHH----------------------
Confidence 44566666665554444333222222222333222 268899999999998852
Q ss_pred ccccccCceEEEEEEe-cCceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCC----CCeEEEE--CCe--Ec--
Q 012759 362 DYNIQKESTLHLVLRL-RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP----DQQRLIF--AGK--QL-- 430 (457)
Q Consensus 362 ~~~i~~~~~l~l~~~~-~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~----~~q~l~~--~g~--~L-- 430 (457)
.|-..+.-++.+..-. .....++|-..-.+.-.+.+.++.|+.++-...- |+.+ ..-.+.- +|+ ..
T Consensus 59 ~~~~~p~v~V~v~~~~~~~~~~V~V~GeV~~PG~y~~~~~~tl~~ai~~AG---G~~~~a~~~~v~i~R~~~~~~~~~~i 135 (165)
T TIGR03027 59 KYVRNPVVTVIVTGFIGPFSEQIRVVGAAANPQALPYREGMTLLDVMIAVG---GLTDFADGNRAVIVRTVDGEQKQISV 135 (165)
T ss_pred HhccCCeEEEEEeecccCCCcEEEEEEEeCCCceeeeCCCCcHHHHHHHcC---CCCcccCCCeEEEEECCCCceEEEEE
Confidence 0100111222222110 1234566654433333455678888887665543 4443 2334443 232 11
Q ss_pred ------CCCCcccccCCCCCCEEEEEE
Q 012759 431 ------EDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 431 ------~d~~tL~~~~I~~~~~i~l~~ 451 (457)
.+...=.+.-+++||+|++--
T Consensus 136 dl~~l~~~g~~~~n~~L~~gD~I~Vp~ 162 (165)
T TIGR03027 136 RLKDLIKDGDVTANVELKPGDVLIIPE 162 (165)
T ss_pred EHHHHhhcCCccCCceeCCCCEEEEec
Confidence 111222456688999998753
No 278
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=38.57 E-value=1.6e+02 Score=21.81 Aligned_cols=64 Identities=20% Similarity=0.229 Sum_probs=53.0
Q ss_pred EEEEecCCchHHHHHHHHhhhcCCCCCCe-EEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 393 ITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 393 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q-~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
..+.|+.......+-...++.+++|+..- .+.-+|.-++..+|-..+-++.|+.+.+.-|-|=|
T Consensus 18 kvlsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliPRDrvG 82 (82)
T cd01766 18 KVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRDRVG 82 (82)
T ss_pred eEEeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEeeecccccCC
Confidence 45688888888888888888999987665 45668999999999999999999999998886633
No 279
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=38.34 E-value=34 Score=28.20 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=36.1
Q ss_pred EEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEecCcccCCCCccccc
Q 012759 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135 (457)
Q Consensus 88 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y 135 (457)
...+-|+.+.||+++..-|+.+.++++++.-|+.++..+..+.++.+.
T Consensus 42 ~KfllVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~l 89 (121)
T PTZ00380 42 VHFLALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGDI 89 (121)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHHH
Confidence 333469999999999999999999999884344555555666677663
No 280
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=38.28 E-value=2.1e+02 Score=22.97 Aligned_cols=63 Identities=29% Similarity=0.335 Sum_probs=40.8
Q ss_pred CceEEEEeeCCccHHHHHHHHhhh----c--CCCCC-CeEEEeCCcc--cCCCccccccc-----cCCCCeEEEEEe
Q 012759 238 GKTITLEVESSDTIDNVKAKIQDK----E--GIPPD-QQRLIFAGKQ--LEDGRTLADYN-----IQKESTLHLVLR 300 (457)
Q Consensus 238 g~~~~~~v~~~~tV~~lK~~I~~~----~--~ip~~-~q~L~~~g~~--L~d~~tl~~~~-----i~~~~tl~l~~~ 300 (457)
...+++.+..++|+.+|.+.+-.+ . .-+++ ++.|.-.|+. |..+..|.+|. ++.+..++|...
T Consensus 28 ~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~~~~L~L~ 104 (108)
T smart00144 28 QQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGREPHLVLM 104 (108)
T ss_pred ceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCCCceEEEE
Confidence 457999999999999998876654 1 23444 6777777754 44444554442 556666666543
No 281
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=38.07 E-value=1.6e+02 Score=22.66 Aligned_cols=66 Identities=23% Similarity=0.274 Sum_probs=46.8
Q ss_pred eEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEC-------CeEcCCCCc----ccccCCCCCCEEE
Q 012759 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-------GKQLEDGRT----LADYNIQKESTLH 448 (457)
Q Consensus 383 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~-------g~~L~d~~t----L~~~~I~~~~~i~ 448 (457)
|.|-..+|...++.|+..+|+.++-..+..+.....+.-.-.+. .+.++|... |+..++.....++
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~vvdvl~~W~~~~~n~l~ 81 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHELVVEVLSTWHSAGNSVLF 81 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHHHHHHHHhcccCCCcEEE
Confidence 45555778899999999999999999999999887776654442 345666653 4444554444443
No 282
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=37.14 E-value=74 Score=24.13 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=33.3
Q ss_pred CCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEE
Q 012759 388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 425 (457)
Q Consensus 388 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~ 425 (457)
..|.+..+.++..-|-+.|+++|+..+++|++..-+.|
T Consensus 7 ~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtY 44 (82)
T cd06397 7 FLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTY 44 (82)
T ss_pred eCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEE
Confidence 35667788888888999999999999999999888888
No 283
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=36.56 E-value=2.7e+02 Score=23.84 Aligned_cols=111 Identities=22% Similarity=0.386 Sum_probs=69.8
Q ss_pred EEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccc----eeEEEEecC-ceEEEEEccCC
Q 012759 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST----LHLVLRLRG-GMQIFVKTLTG 86 (457)
Q Consensus 12 ~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~st----i~l~~~~~~-~~~i~vk~~~g 86 (457)
.|+-++-.-+|.+.+=.++.+-.|| .+++.+|..|...- -|+...+.. -+-.+...+ .+.+.|+. |
T Consensus 4 IfP~R~L~~eTtEklLN~l~~i~gI----~R~vIhGp~LPk~V---pyGPa~G~pv~h~~Rk~I~V~g~~veL~V~V--G 74 (150)
T TIGR03260 4 IFPHRLLKAETTEKLLNKLYDLDGI----LRVVIHGQRLPKKV---PYGPARGLPVNHPDRKTIRVKGEDVELRVQV--G 74 (150)
T ss_pred EechhhCCHHHHHHHHHHhhccCCE----EEEEEECCCCCCCC---CCCcccCCCCCCCcceEEEECCEEEEEEEEE--e
Confidence 3455556678888888888887766 56888888886521 244443322 222333322 34555542 2
Q ss_pred cEEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEecCcccCCCCcccccc
Q 012759 87 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136 (457)
Q Consensus 87 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~ 136 (457)
.+.+++...+.+.++++...+.+.++.+ +..|+-+.+..|++||-
T Consensus 75 -rI~le~~~~~~i~~I~eiC~e~~pF~y~----i~~g~f~r~~~TvtDY~ 119 (150)
T TIGR03260 75 -RIILELEDEDIVEEIEEICKEMLPFGYE----VRVGKFLRTKPTVTDYI 119 (150)
T ss_pred -EEEEEecCHHHHHHHHHHHHhhCCCceE----eeeeeEeecCCchhhhh
Confidence 4566777777888888777766554432 34578889999999984
No 284
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=36.24 E-value=47 Score=36.12 Aligned_cols=52 Identities=21% Similarity=0.420 Sum_probs=42.9
Q ss_pred CCCEEEEEec-CCchHHHHHHHHhhhcCCCCCCeEEEE-CCeEcCCCCcccccC
Q 012759 389 TGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYN 440 (457)
Q Consensus 389 ~g~~~~l~v~-~~~tV~~lK~~i~~~~gip~~~q~l~~-~g~~L~d~~tL~~~~ 440 (457)
.|+..+++.. .+.|+++||.+|+.+.|+...++.+.- +|..+..++.|+.|.
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~S 56 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEIS 56 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhc
Confidence 4777888877 466999999999999999999997765 577778788888775
No 285
>PRK08453 fliD flagellar capping protein; Validated
Probab=35.29 E-value=1e+02 Score=33.38 Aligned_cols=85 Identities=25% Similarity=0.382 Sum_probs=48.5
Q ss_pred eCCcEEEEEeecCccHHHHHHHhhhhc-----------CCCCCCceEEecCeeccC------CCcccccccccCceEEEE
Q 012759 312 LTGKTITLEVESSDTIDNVKAKIQDKE-----------GIPPDQQRLIFAGKQLED------GRTLADYNIQKESTLHLV 374 (457)
Q Consensus 312 ~~g~~~~l~v~~~~Tv~~lK~~I~~~~-----------~ip~~~q~l~~~g~~L~d------~~~l~~~~i~~~~~l~l~ 374 (457)
.+|++|+++|+.++|+.+|+.+|-+-. | .....+|++.+...-. +.+|....+.++. +.++
T Consensus 135 ~~G~~~sIdi~~gtTL~~L~~~INd~~n~~V~Asiv~tG-~~~~y~L~l~s~etGa~n~I~~~~~~~~~~~~~~~-~~~~ 212 (673)
T PRK08453 135 TQGKDYAIDIKAGMTLGDVAQSITDATNGEVMGIVMKTG-GNDPYQLMINSKNTGEDNRIYFGSTLQSTLTNKNA-LSLV 212 (673)
T ss_pred ECCEEEEEEeCCCCcHHHHHHHhcCCCCCCeEEEEEecC-CCccEEEEEeccCcCCCceEEEeccccccccCCcc-cccc
Confidence 459999999999999999999998532 2 1111233333322211 1222222232222 1122
Q ss_pred -EEecCceeeEEEcCCCCEEEEEec
Q 012759 375 -LRLRGGMQIFVKTLTGKTITLEVE 398 (457)
Q Consensus 375 -~~~~~~~~i~v~~~~g~~~~l~v~ 398 (457)
..-.+.+.|+++...|+.+.+.+.
T Consensus 213 ~~~~~~~~~~~~~~~~g~~~~~~~~ 237 (673)
T PRK08453 213 DGSGKGDLSLNLKDADGNMHTVPIM 237 (673)
T ss_pred cccccccceeeeeccCCcccccccc
Confidence 112456889999888887766544
No 286
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=35.17 E-value=55 Score=25.30 Aligned_cols=59 Identities=7% Similarity=0.076 Sum_probs=40.4
Q ss_pred EEEEecCCchHHHHHHHHhhhcCCCCCCe-EEEECCeEc-CCCCc---ccccCCCCCCEEEEEEe
Q 012759 393 ITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQL-EDGRT---LADYNIQKESTLHLVLR 452 (457)
Q Consensus 393 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q-~l~~~g~~L-~d~~t---L~~~~I~~~~~i~l~~r 452 (457)
..+.|+.+.|++++...|..+.++++++- .|+.+..-+ ..+.+ |.++- .++.-+++...
T Consensus 18 ~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~-~~dGfLyi~Ys 81 (87)
T cd01612 18 KVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCF-GTNGELIVSYC 81 (87)
T ss_pred cEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhc-CCCCEEEEEEe
Confidence 44669999999999999999999988764 444455423 34444 44444 55666777653
No 287
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=35.17 E-value=1.4e+02 Score=22.69 Aligned_cols=53 Identities=21% Similarity=0.426 Sum_probs=40.3
Q ss_pred CceEEEEeeCCccHHHHHHHHhhhcCCCCCCeEEEe-CCcccCCCccccccccCCCCeEEEEE
Q 012759 238 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVL 299 (457)
Q Consensus 238 g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~-~g~~L~d~~tl~~~~i~~~~tl~l~~ 299 (457)
+..+.+...+..||+++-+ .+|+|..+--+++ ||+..+- +|-+++|+.+.+..
T Consensus 22 ~~~~~~~~~~~~tvkd~IE----sLGVP~tEV~~i~vNG~~v~~-----~~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIE----SLGVPHTEVGLILVNGRPVDF-----DYRLKDGDRVAVYP 75 (81)
T ss_pred CCceEEecCCCCcHHHHHH----HcCCChHHeEEEEECCEECCC-----cccCCCCCEEEEEe
Confidence 5678889999999999864 5799999866655 7776543 47788899887654
No 288
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=34.87 E-value=1.6e+02 Score=23.35 Aligned_cols=71 Identities=23% Similarity=0.398 Sum_probs=41.8
Q ss_pred eeeEEEcC-CCCEEEEEecCCchHHHHHHHHhhh--cCCCCC----CeEEEECCe--EcCCCCcccccC-----CCCCCE
Q 012759 381 MQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDK--EGIPPD----QQRLIFAGK--QLEDGRTLADYN-----IQKEST 446 (457)
Q Consensus 381 ~~i~v~~~-~g~~~~l~v~~~~tV~~lK~~i~~~--~gip~~----~q~l~~~g~--~L~d~~tL~~~~-----I~~~~~ 446 (457)
+.|.|... .+..+++.|+.+.|+.+|.+.+-.+ .+..+. +..|--.|+ -|..+..|.+|. +..+-.
T Consensus 17 i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~~ 96 (106)
T PF00794_consen 17 IKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGKD 96 (106)
T ss_dssp EEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT--
T ss_pred EEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCCC
Confidence 34445444 5667999999999999999888877 222222 455555555 556777787773 234445
Q ss_pred EEEEE
Q 012759 447 LHLVL 451 (457)
Q Consensus 447 i~l~~ 451 (457)
++|.+
T Consensus 97 ~~L~L 101 (106)
T PF00794_consen 97 PHLVL 101 (106)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 55544
No 289
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=34.74 E-value=52 Score=25.70 Aligned_cols=40 Identities=23% Similarity=0.308 Sum_probs=32.8
Q ss_pred CCcEEEEEeecCccHHHHHHHhhhhcCCCCCCce-EEecCe
Q 012759 313 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGK 352 (457)
Q Consensus 313 ~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~-l~~~g~ 352 (457)
..+.+++.|++.+|=.++|+.|+..+++++..-+ +...|.
T Consensus 19 ~~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk 59 (92)
T PRK05738 19 KQNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGK 59 (92)
T ss_pred hCCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCc
Confidence 3578999999999999999999999999997544 334443
No 290
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=34.30 E-value=1.1e+02 Score=29.09 Aligned_cols=71 Identities=15% Similarity=0.255 Sum_probs=55.0
Q ss_pred cceeeeEeeccCceEEEeecCCChHHHHHHHHhhhhCCCCCceEEE--ECCeecC---CCCCccccCCCcCcEEEE
Q 012759 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHL 221 (457)
Q Consensus 151 ~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~g~~L~---d~~tL~~y~I~~~~~i~l 221 (457)
....+.|+..+|+++...+++..+...++.-+....+...+.+.|. |--..+. -.++|...++.+.+++.+
T Consensus 209 s~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred cceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 3467888999999999999999999999999999988877666664 3233332 247888888888777644
No 291
>PRK08453 fliD flagellar capping protein; Validated
Probab=34.11 E-value=1.2e+02 Score=32.90 Aligned_cols=86 Identities=19% Similarity=0.276 Sum_probs=54.9
Q ss_pred ccCCceEEEEeeCCccHHHHHHHHhhh-----------cCCCCCCeEEEeCCcccCCCcc------ccccccCCCCeEEE
Q 012759 235 TLTGKTITLEVESSDTIDNVKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGRT------LADYNIQKESTLHL 297 (457)
Q Consensus 235 ~~~g~~~~~~v~~~~tV~~lK~~I~~~-----------~~ip~~~q~L~~~g~~L~d~~t------l~~~~i~~~~tl~l 297 (457)
...|++++++|.+..|+++|+.+|-+. .| ..+-|+|+..+...-.+.. |..-.+..|.--.+
T Consensus 134 ~~~G~~~sIdi~~gtTL~~L~~~INd~~n~~V~Asiv~tG-~~~~y~L~l~s~etGa~n~I~~~~~~~~~~~~~~~~~~~ 212 (673)
T PRK08453 134 YTQGKDYAIDIKAGMTLGDVAQSITDATNGEVMGIVMKTG-GNDPYQLMINSKNTGEDNRIYFGSTLQSTLTNKNALSLV 212 (673)
T ss_pred EECCEEEEEEeCCCCcHHHHHHHhcCCCCCCeEEEEEecC-CCccEEEEEeccCcCCCceEEEeccccccccCCcccccc
Confidence 345999999999999999999999842 23 2234888887776544443 33333433331101
Q ss_pred EEeecCceeeEEEeeCCcEEEEEe
Q 012759 298 VLRLRGGMQIFVKTLTGKTITLEV 321 (457)
Q Consensus 298 ~~~~~~~~~i~i~~~~g~~~~l~v 321 (457)
-..-.+...|++|..+|+.+++.+
T Consensus 213 ~~~~~~~~~~~~~~~~g~~~~~~~ 236 (673)
T PRK08453 213 DGSGKGDLSLNLKDADGNMHTVPI 236 (673)
T ss_pred cccccccceeeeeccCCccccccc
Confidence 112244467888888898776655
No 292
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=33.61 E-value=21 Score=35.36 Aligned_cols=50 Identities=34% Similarity=0.564 Sum_probs=43.5
Q ss_pred ccCCcEEEEEEc-CCCCHHHHHHHHhhhhCCCCCCeEEEecCcccCCCCcc
Q 012759 83 TLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132 (457)
Q Consensus 83 ~~~g~~~~l~v~-~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl 132 (457)
..+|....+.+. .++.+..+|.++.+..++++..|.+.+.|..|.|+..+
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeeccCCcccCccccc
Confidence 466788887777 77789999999999999999999999999999887443
No 293
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=33.43 E-value=72 Score=24.92 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=30.4
Q ss_pred CCEEEEEecCCchHHHHHHHHhhhcCCCCCCeE
Q 012759 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 422 (457)
Q Consensus 390 g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~ 422 (457)
.+.+++.|++..|=.++|..|+..+|+++..-+
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~Vn 52 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVN 52 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEE
Confidence 468999999999999999999999999998775
No 294
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=32.79 E-value=89 Score=23.37 Aligned_cols=36 Identities=19% Similarity=0.397 Sum_probs=28.6
Q ss_pred CchHHHHHHHHhhhcCCCCCCeEEE--ECCeEcCCCCc
Q 012759 400 SDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRT 435 (457)
Q Consensus 400 ~~tV~~lK~~i~~~~gip~~~q~l~--~~g~~L~d~~t 435 (457)
-.+.++|+.+.+++.++|...-++. -+|..++|+.-
T Consensus 18 A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEey 55 (74)
T smart00266 18 ASSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEY 55 (74)
T ss_pred cCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHH
Confidence 3589999999999999996555554 48999987753
No 295
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=32.77 E-value=1.3e+02 Score=23.51 Aligned_cols=40 Identities=13% Similarity=0.295 Sum_probs=30.0
Q ss_pred cCCceEEEEeeC-----CccHHHHHHHHhhhcCCCC-CCeEEEeCC
Q 012759 236 LTGKTITLEVES-----SDTIDNVKAKIQDKEGIPP-DQQRLIFAG 275 (457)
Q Consensus 236 ~~g~~~~~~v~~-----~~tV~~lK~~I~~~~~ip~-~~q~L~~~g 275 (457)
..|...++.+.. +-+...|+++|.+.+++|+ ....|.|..
T Consensus 7 y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~D 52 (91)
T cd06398 7 YGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTD 52 (91)
T ss_pred eCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEEC
Confidence 355566666664 5799999999999999988 456666644
No 296
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=32.44 E-value=52 Score=25.27 Aligned_cols=55 Identities=20% Similarity=0.291 Sum_probs=37.3
Q ss_pred EEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeE--------cC------CCCcccccCCCCCCEEEEE
Q 012759 395 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ--------LE------DGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 395 l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~--------L~------d~~tL~~~~I~~~~~i~l~ 450 (457)
++|+++.|+.+|...+++.-.+....=.+..+++. |+ =+++|.+. +.+|..|.|+
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~Vt 69 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVT 69 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEE
Confidence 57899999999999999985343333334444432 22 13689999 8899888875
No 297
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=32.43 E-value=1.8e+02 Score=23.14 Aligned_cols=70 Identities=23% Similarity=0.395 Sum_probs=41.7
Q ss_pred eEEEEcc-CCceEEEEeeCCccHHHHHHHHhhh--cCCC----CCCeEEEeCCcc--cCCCccccccc-----cCCCCeE
Q 012759 230 QIFVKTL-TGKTITLEVESSDTIDNVKAKIQDK--EGIP----PDQQRLIFAGKQ--LEDGRTLADYN-----IQKESTL 295 (457)
Q Consensus 230 ~i~V~~~-~g~~~~~~v~~~~tV~~lK~~I~~~--~~ip----~~~q~L~~~g~~--L~d~~tl~~~~-----i~~~~tl 295 (457)
.|.|... .+..+++.++.+.|+.+|.+++-.+ .++. .+++.|.-.|+. |..+.+|.+|. ++.+-.+
T Consensus 18 ~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~~~ 97 (106)
T PF00794_consen 18 KVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGKDP 97 (106)
T ss_dssp EEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT--E
T ss_pred EEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCCCc
Confidence 3444444 5678999999999999998887665 1221 226777777754 55666776664 4455555
Q ss_pred EEEE
Q 012759 296 HLVL 299 (457)
Q Consensus 296 ~l~~ 299 (457)
+|..
T Consensus 98 ~L~L 101 (106)
T PF00794_consen 98 HLVL 101 (106)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5543
No 298
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=32.42 E-value=61 Score=24.44 Aligned_cols=33 Identities=12% Similarity=0.219 Sum_probs=29.4
Q ss_pred CcEEEEEeecCccHHHHHHHhhhhcCCCCCCce
Q 012759 314 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 346 (457)
Q Consensus 314 g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~ 346 (457)
.+.|++.|++.+|=.++|+.|+..+++.+..-+
T Consensus 14 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vn 46 (77)
T TIGR03636 14 ENKLTFIVDRKATKGDIKRAVEKLFDVKVEKVN 46 (77)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEE
Confidence 468999999999999999999999999887533
No 299
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=32.34 E-value=81 Score=23.58 Aligned_cols=40 Identities=18% Similarity=0.372 Sum_probs=30.6
Q ss_pred CccHHHHHHHhhhhcCCCCCCceEE--ecCeeccCCCccccc
Q 012759 324 SDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLADY 363 (457)
Q Consensus 324 ~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L~d~~~l~~~ 363 (457)
..+.++|+.+..+++++|...-.++ -.|..++|+.-+..+
T Consensus 18 A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~tL 59 (74)
T smart00266 18 ASSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQTL 59 (74)
T ss_pred cCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHhcC
Confidence 4589999999999999995444444 578888887766554
No 300
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=31.87 E-value=1.3e+02 Score=22.47 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=20.5
Q ss_pred cEEEEEeecCccHHHHHHHhhhhcC
Q 012759 315 KTITLEVESSDTIDNVKAKIQDKEG 339 (457)
Q Consensus 315 ~~~~l~v~~~~Tv~~lK~~I~~~~~ 339 (457)
+.+-.-..++.|+.+|+..|.+++.
T Consensus 3 kKFLhlt~~~~tl~~L~~eI~~~f~ 27 (73)
T PF10407_consen 3 KKFLHLTDPNNTLSQLKEEIEERFK 27 (73)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHH
Confidence 3455567899999999999999866
No 301
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=31.69 E-value=90 Score=22.02 Aligned_cols=58 Identities=14% Similarity=0.126 Sum_probs=36.4
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeE
Q 012759 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 69 (457)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l 69 (457)
|.|.+++|+... ++...|+.++...|....+-..- .-..+|+..+- +|.+.+++++.+
T Consensus 1 I~v~lpdG~~~~--~~~g~T~~d~A~~I~~~l~~~~~--~A~Vng~~vdl-----~~~L~~~d~v~i 58 (60)
T PF02824_consen 1 IRVYLPDGSIKE--LPEGSTVLDVAYSIHSSLAKRAV--AAKVNGQLVDL-----DHPLEDGDVVEI 58 (60)
T ss_dssp EEEEETTSCEEE--EETTBBHHHHHHHHSHHHHHCEE--EEEETTEEEET-----TSBB-SSEEEEE
T ss_pred CEEECCCCCeee--CCCCCCHHHHHHHHCHHHHhhee--EEEEcCEECCC-----CCCcCCCCEEEE
Confidence 567779998876 67778899999999876542221 12356655543 444455555544
No 302
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=31.67 E-value=73 Score=34.75 Aligned_cols=53 Identities=21% Similarity=0.397 Sum_probs=44.8
Q ss_pred CCcEEEEEecC-CCcHHHHHHHHhhhcCCCCccceEeeccE-EccCCCccccccc
Q 012759 9 TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGK-QLEDGRTLADYNI 61 (457)
Q Consensus 9 ~g~~~~~~v~~-~dtv~~ik~ki~~~~gip~~~q~l~~~g~-~L~~~~tl~~y~i 61 (457)
.|.+++++... ..|+.++|..|+++.|+....|.++-+|- ..+.++.+..|.-
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~St 57 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEIST 57 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhcc
Confidence 58888888887 58999999999999999999988888654 5667889999874
No 303
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=31.53 E-value=79 Score=23.84 Aligned_cols=33 Identities=12% Similarity=0.214 Sum_probs=30.2
Q ss_pred CEEEEEecCCchHHHHHHHHhhhcCCCCCCeEE
Q 012759 391 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 423 (457)
Q Consensus 391 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l 423 (457)
+.+++.|++..|=.++|..|+..+|+.+..-+-
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt 47 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNT 47 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEe
Confidence 589999999999999999999999999887764
No 304
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=31.44 E-value=24 Score=34.89 Aligned_cols=51 Identities=35% Similarity=0.569 Sum_probs=44.3
Q ss_pred eeCCcEEEEEee-cCccHHHHHHHhhhhcCCCCCCceEEecCeeccCCCccc
Q 012759 311 TLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 361 (457)
Q Consensus 311 ~~~g~~~~l~v~-~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~l~ 361 (457)
..+|.++.+.+. .+.-+..+|.++....++++..|.+.+.|..++|+.+++
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~~ 340 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSLA 340 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeeccCCcccCcccccc
Confidence 457788887777 788899999999999999999999999999998885543
No 305
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=30.90 E-value=91 Score=23.56 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=23.9
Q ss_pred EEEEeeCCccHHHHHHHHhhhcC--------CCCCCeEEEe
Q 012759 241 ITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIF 273 (457)
Q Consensus 241 ~~~~v~~~~tV~~lK~~I~~~~~--------ip~~~q~L~~ 273 (457)
+.+.+..+.|+.++|+.+.+... -.++.|.+.+
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A~~~PL~~~L~~~~~Y~F~~ 42 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEAKKYPLFSLLKDPSSYIFSC 42 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHGGGSTTCCCS--GGGEEEEE
T ss_pred eEEEccCcCcHHHHHHHHHHHHHhCChHHHhCCCCcEEEEE
Confidence 67899999999999999887643 2556666665
No 306
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=30.19 E-value=1.7e+02 Score=21.72 Aligned_cols=57 Identities=18% Similarity=0.254 Sum_probs=44.3
Q ss_pred EEEEecCCchHHHHHHHHhhhcCCCCCCeEEE-ECCeEcCCCCcccccCCCCCCEEEE
Q 012759 393 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHL 449 (457)
Q Consensus 393 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~-~~g~~L~d~~tL~~~~I~~~~~i~l 449 (457)
..+.|++......+-...++.+.+|+..--++ -+|.-+...+|-.+.-++.|+.+.+
T Consensus 18 kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLrl 75 (76)
T PF03671_consen 18 KVISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELRL 75 (76)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEEE
T ss_pred eEEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEeee
Confidence 56789999988888888888899998877655 4799999999988888888998876
No 307
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=30.17 E-value=58 Score=25.35 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=32.7
Q ss_pred CEEEEEecCCchHHHHHHHHhhhcCCCCCCeE-EEECCe
Q 012759 391 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGK 428 (457)
Q Consensus 391 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~-l~~~g~ 428 (457)
..+++.|+++.|=.++|+.|+..+|+++..-+ +.+.|+
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk 59 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGK 59 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCC
Confidence 57999999999999999999999999997765 345555
No 308
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=29.77 E-value=1.8e+02 Score=23.28 Aligned_cols=43 Identities=16% Similarity=0.251 Sum_probs=29.6
Q ss_pred EEeeCCccHHHHHHHHhhhcCCCCCCeEEEe-CCcccCCCcccc
Q 012759 243 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLA 285 (457)
Q Consensus 243 ~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~-~g~~L~d~~tl~ 285 (457)
+-|....||+++...|..+..+++++-.++| ++.....+.|+.
T Consensus 37 fLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~ 80 (104)
T PF02991_consen 37 FLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMG 80 (104)
T ss_dssp EEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHH
T ss_pred EEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHH
Confidence 4578899999999999999999988744444 554445555553
No 309
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=29.02 E-value=1.3e+02 Score=22.77 Aligned_cols=39 Identities=21% Similarity=0.410 Sum_probs=30.1
Q ss_pred ccHHHHHHHhhhhcCCCCCCceEE--ecCeeccCCCccccc
Q 012759 325 DTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLADY 363 (457)
Q Consensus 325 ~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L~d~~~l~~~ 363 (457)
.+.+||+.+..++++++.+.-.|+ -.|.+.+|+.-+..+
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~tL 61 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQTL 61 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCCS
T ss_pred CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhhC
Confidence 689999999999999997665666 478888877755554
No 310
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=28.70 E-value=71 Score=23.50 Aligned_cols=43 Identities=21% Similarity=0.311 Sum_probs=31.7
Q ss_pred chHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEE
Q 012759 401 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 449 (457)
Q Consensus 401 ~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l 449 (457)
.|+++|....++++|++ ..-.+.-+|-+++|=.. |.+|+.|++
T Consensus 26 ~SleeLl~ia~~kfg~~-~~~v~~~dgaeIdDI~~-----IRDgD~L~~ 68 (69)
T PF11834_consen 26 DSLEELLKIASEKFGFS-ATKVLNEDGAEIDDIDV-----IRDGDHLYL 68 (69)
T ss_pred ccHHHHHHHHHHHhCCC-ceEEEcCCCCEEeEEEE-----EEcCCEEEE
Confidence 79999999999999997 45556666777665433 445777765
No 311
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=28.20 E-value=78 Score=24.32 Aligned_cols=32 Identities=13% Similarity=0.251 Sum_probs=29.2
Q ss_pred CCcEEEEEeecCccHHHHHHHhhhhcCCCCCC
Q 012759 313 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 344 (457)
Q Consensus 313 ~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~ 344 (457)
+.+++++.|++.++=.++|+.|+..+|+++..
T Consensus 20 ~~n~y~F~V~~~anK~eIK~AvE~lf~VkV~~ 51 (84)
T PRK14548 20 KENKLTFIVDRRATKPDIKRAVEELFDVKVEK 51 (84)
T ss_pred hCCEEEEEECCCCCHHHHHHHHHHHhCCceEE
Confidence 35789999999999999999999999998874
No 312
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=27.93 E-value=2e+02 Score=21.48 Aligned_cols=61 Identities=16% Similarity=0.360 Sum_probs=37.4
Q ss_pred CEEEEEecCCchHHHHHHHHhhhcC-CCCCCeEEEE------CCeEcCCCCcccccCCCCCCEEEEEEe
Q 012759 391 KTITLEVESSDTIDNVKAKIQDKEG-IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 391 ~~~~l~v~~~~tV~~lK~~i~~~~g-ip~~~q~l~~------~g~~L~d~~tL~~~~I~~~~~i~l~~r 452 (457)
+.+.+-.+|+.|+.+|+..|.+++. +-|....+.- .|--|+.+.+.++. ...+++|.+.++
T Consensus 3 kKFLhlt~~~~tl~~L~~eI~~~f~kLYP~~~~~~I~~LQD~~~cDLD~d~~V~DV-f~~~~~vrvi~~ 70 (73)
T PF10407_consen 3 KKFLHLTDPNNTLSQLKEEIEERFKKLYPNEPELEILSLQDSDGCDLDPDFLVKDV-FNSNNVVRVILK 70 (73)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHHCCCCCCceEEEeecCCCCCCCcccEeeee-eccCCEEEEEec
Confidence 3466678899999999999999874 4444432221 23334444444444 235677776654
No 313
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=27.64 E-value=85 Score=24.40 Aligned_cols=41 Identities=22% Similarity=0.379 Sum_probs=33.5
Q ss_pred CCcEEEEEeecCccHHHHHHHhhhhcCCCCCCce-EEecCee
Q 012759 313 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQ 353 (457)
Q Consensus 313 ~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~-l~~~g~~ 353 (457)
+...+++.|++++|=.|+|+.|+..+|+++..-+ +.+.|..
T Consensus 19 ~~n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~ 60 (91)
T PF00276_consen 19 NPNQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKK 60 (91)
T ss_dssp HSSEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEE
T ss_pred cCCEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCc
Confidence 3478999999999999999999999999997544 3355553
No 314
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=27.28 E-value=1.6e+02 Score=22.87 Aligned_cols=65 Identities=17% Similarity=0.328 Sum_probs=43.2
Q ss_pred CCCEEEEEecC-----CchHHHHHHHHhhhcCCCC-CCeEEEEC---Ce--EcCCCCcccc-----cCCCCCCEEEEEEe
Q 012759 389 TGKTITLEVES-----SDTIDNVKAKIQDKEGIPP-DQQRLIFA---GK--QLEDGRTLAD-----YNIQKESTLHLVLR 452 (457)
Q Consensus 389 ~g~~~~l~v~~-----~~tV~~lK~~i~~~~gip~-~~q~l~~~---g~--~L~d~~tL~~-----~~I~~~~~i~l~~r 452 (457)
.|..+.+.++. +.+..+|+.+|++..++++ ....|.|. |. .|.++.-|.+ +.-....++.+.++
T Consensus 8 ~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~~~~~~~~~~lrl~v~ 87 (91)
T cd06398 8 GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQYFCSGSRLNPLRIDVT 87 (91)
T ss_pred CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHHHhccCCCceEEEEEE
Confidence 45566677764 7899999999999999998 66677773 22 3333332222 33446778877765
Q ss_pred c
Q 012759 453 L 453 (457)
Q Consensus 453 ~ 453 (457)
+
T Consensus 88 ~ 88 (91)
T cd06398 88 V 88 (91)
T ss_pred E
Confidence 4
No 315
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=26.12 E-value=1.5e+02 Score=29.17 Aligned_cols=63 Identities=19% Similarity=0.225 Sum_probs=49.1
Q ss_pred EEEEecCCchHHHHHHHHhhhc--------------C-CCCCCeEEEECCeEcCCCCccccc---CCCCCCEEEEEEecC
Q 012759 393 ITLEVESSDTIDNVKAKIQDKE--------------G-IPPDQQRLIFAGKQLEDGRTLADY---NIQKESTLHLVLRLR 454 (457)
Q Consensus 393 ~~l~v~~~~tV~~lK~~i~~~~--------------g-ip~~~q~l~~~g~~L~d~~tL~~~---~I~~~~~i~l~~r~~ 454 (457)
..|..+..-.|..++..|.++. . -|.+...|+|+|..|.++.||+-. =.+.+.-|.|..|..
T Consensus 250 ~rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~YR~k 329 (331)
T PF11816_consen 250 SRLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHYRRK 329 (331)
T ss_pred ceecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEEEec
Confidence 4466667778888888888887 2 566777899999999999987654 367788888888876
Q ss_pred C
Q 012759 455 G 455 (457)
Q Consensus 455 G 455 (457)
|
T Consensus 330 ~ 330 (331)
T PF11816_consen 330 G 330 (331)
T ss_pred C
Confidence 5
No 316
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=25.49 E-value=1.2e+02 Score=23.32 Aligned_cols=34 Identities=12% Similarity=0.211 Sum_probs=30.7
Q ss_pred CCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEE
Q 012759 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 423 (457)
Q Consensus 390 g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l 423 (457)
.+.+++.|++..+=.++|..|+..+|+++..-+-
T Consensus 21 ~n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT 54 (84)
T PRK14548 21 ENKLTFIVDRRATKPDIKRAVEELFDVKVEKVNT 54 (84)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEe
Confidence 3589999999999999999999999999987764
No 317
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=25.35 E-value=2e+02 Score=22.71 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=27.2
Q ss_pred eCCcEEEEEeecCccHHHHHHHhhhhcCCCCC
Q 012759 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 343 (457)
Q Consensus 312 ~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~ 343 (457)
.++-..++..+.++||.|+-.++..++.++..
T Consensus 10 ~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~ 41 (97)
T cd01775 10 SDGTFTTLSCPLNTTVSELIPQLAKKFYLPSG 41 (97)
T ss_pred cCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCC
Confidence 45555679999999999999999999988875
No 318
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.87 E-value=59 Score=32.95 Aligned_cols=52 Identities=25% Similarity=0.265 Sum_probs=45.5
Q ss_pred EEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCC
Q 012759 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 445 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~ 445 (457)
.++++..-|=.++...|+++.||+..+.+.+-+|+.|+-.+||++-|++..-
T Consensus 53 l~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq 104 (568)
T KOG2561|consen 53 LKKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQ 104 (568)
T ss_pred hhhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhh
Confidence 4456667778899999999999999999999999999999999999987543
No 319
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=23.85 E-value=98 Score=23.41 Aligned_cols=35 Identities=17% Similarity=0.392 Sum_probs=27.9
Q ss_pred CchHHHHHHHHhhhcCCCCCCeEEE--ECCeEcCCCC
Q 012759 400 SDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGR 434 (457)
Q Consensus 400 ~~tV~~lK~~i~~~~gip~~~q~l~--~~g~~L~d~~ 434 (457)
-.+..+|+.+.+++.++|...-+++ -+|.+++|+.
T Consensus 20 A~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEe 56 (78)
T cd01615 20 ASSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEE 56 (78)
T ss_pred cCCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHH
Confidence 3589999999999999975555544 4899998775
No 320
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=23.60 E-value=1.2e+02 Score=23.23 Aligned_cols=34 Identities=24% Similarity=0.234 Sum_probs=28.2
Q ss_pred eEEEEeeCCccHHHHHHHHhhhcCC-CCCCeEEEe
Q 012759 240 TITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIF 273 (457)
Q Consensus 240 ~~~~~v~~~~tV~~lK~~I~~~~~i-p~~~q~L~~ 273 (457)
.-++.|.++.|.++|=+++.+++++ .|+.+.|.+
T Consensus 15 ~KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl 49 (87)
T cd01776 15 GKTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFL 49 (87)
T ss_pred eeeeecCCCCcHHHHHHHHHHHhccCChhheeEEE
Confidence 3468899999999999999999998 667676654
No 321
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=23.18 E-value=2.9e+02 Score=22.41 Aligned_cols=43 Identities=19% Similarity=0.293 Sum_probs=32.4
Q ss_pred EEEeeCCccHHHHHHHHhhhcCCCCCCeEEEeCCccc-CCCccc
Q 012759 242 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 284 (457)
Q Consensus 242 ~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L-~d~~tl 284 (457)
.+-|..+.||+++...|..+..+++++-.++|-+..+ ..+.++
T Consensus 44 KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~ 87 (112)
T cd01611 44 KYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATM 87 (112)
T ss_pred eEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHH
Confidence 3568899999999999999999999886666644333 444444
No 322
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=22.89 E-value=98 Score=23.40 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=17.7
Q ss_pred EEEEeecCccHHHHHHHhhhh
Q 012759 317 ITLEVESSDTIDNVKAKIQDK 337 (457)
Q Consensus 317 ~~l~v~~~~Tv~~lK~~I~~~ 337 (457)
++++++.++|+.++|+.+.+.
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~ 22 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEE 22 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHH
T ss_pred eEEEccCcCcHHHHHHHHHHH
Confidence 568999999999999998875
No 323
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=22.66 E-value=1.5e+02 Score=26.72 Aligned_cols=48 Identities=19% Similarity=0.271 Sum_probs=32.9
Q ss_pred cccc-ccccceeEEEEecCceEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhC
Q 012759 58 DYNI-QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG 111 (457)
Q Consensus 58 ~y~i-~~~sti~l~~~~~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~g 111 (457)
+++. ..++|+|++-.--++-.|.. ...+.|.+.||.+.|.++|.+.+.
T Consensus 126 ~aG~k~sG~TVH~V~e~vD~GpII~------Q~~Vpv~~~Dt~etl~~RV~~~Eh 174 (200)
T COG0299 126 EAGVKVSGCTVHFVTEGVDTGPIIA------QAAVPVLPGDTAETLEARVLEQEH 174 (200)
T ss_pred HcCCCccCcEEEEEccCCCCCCeEE------EEeeeecCCCCHHHHHHHHHHHHH
Confidence 3454 47888998775433223322 235789999999999999997653
No 324
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=22.52 E-value=1.4e+02 Score=22.56 Aligned_cols=40 Identities=15% Similarity=0.342 Sum_probs=30.4
Q ss_pred CccHHHHHHHhhhhcCCCCCCceEE--ecCeeccCCCccccc
Q 012759 324 SDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLADY 363 (457)
Q Consensus 324 ~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L~d~~~l~~~ 363 (457)
..+.++|+.+..+++++|...-.++ -.|..++|+.-+..+
T Consensus 20 A~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEeYF~tL 61 (78)
T cd01615 20 ASSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEYFQTL 61 (78)
T ss_pred cCCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHHHHhcC
Confidence 4589999999999999975444444 578888887766655
No 325
>CHL00030 rpl23 ribosomal protein L23
Probab=22.06 E-value=1.2e+02 Score=23.81 Aligned_cols=34 Identities=21% Similarity=0.132 Sum_probs=30.2
Q ss_pred CCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEE
Q 012759 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 423 (457)
Q Consensus 390 g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l 423 (457)
.+.+++.|+++.|=.++|+.|+..+|+.+..-+-
T Consensus 19 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt 52 (93)
T CHL00030 19 KNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNS 52 (93)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEE
Confidence 4589999999999999999999999998877653
No 326
>KOG3784 consensus Sorting nexin protein SNX27 [General function prediction only; Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.03 E-value=1.5e+02 Score=29.64 Aligned_cols=44 Identities=30% Similarity=0.431 Sum_probs=35.8
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEc
Q 012759 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 50 (457)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L 50 (457)
|++ ++|..+++++..|||-+.+-+-+..+.|.| .+.+.|-|-.|
T Consensus 112 v~l--png~~i~i~~~~s~tt~~vl~~v~~kl~l~--~e~i~~f~lFl 155 (407)
T KOG3784|consen 112 VFL--PNGEKITINCLVSDTASLVLKSVCRKLGLP--DELIGYFGLFL 155 (407)
T ss_pred EEc--cCCceEEEEEEecccHHHHHHHHHhhcCCc--hHhhhheeeeE
Confidence 444 999999999999999999999999999999 33444444444
No 327
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=21.97 E-value=1.5e+02 Score=22.52 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=27.8
Q ss_pred CchHHHHHHHHhhhcCCCCC----CeEEEECCeEcCCCCc
Q 012759 400 SDTIDNVKAKIQDKEGIPPD----QQRLIFAGKQLEDGRT 435 (457)
Q Consensus 400 ~~tV~~lK~~i~~~~gip~~----~q~l~~~g~~L~d~~t 435 (457)
-.+.++|+.+.+++.+++.. ...|.-+|.+++|+.-
T Consensus 20 A~sL~eL~~K~~~~l~l~~~~~~~~lvL~eDGT~VddEey 59 (80)
T cd06536 20 ASSLEELRIKACESLGFDSSSAPITLVLAEDGTIVEDEDY 59 (80)
T ss_pred cCCHHHHHHHHHHHhCCCCCCCceEEEEecCCcEEccHHH
Confidence 35899999999999999843 3345568999987753
No 328
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=21.95 E-value=3.8e+02 Score=20.66 Aligned_cols=60 Identities=23% Similarity=0.377 Sum_probs=41.8
Q ss_pred EEEEEEcCCCCHHHHHHHHhhhh-C--CCC---CCeEEEecC--cccCCCCcccccccccCCcceEEE
Q 012759 88 TITLEVESSDTIDNVKAKIQDKE-G--IPP---DQQRLIFAG--KQLEDGRTLADYNIQKESTLHLVL 147 (457)
Q Consensus 88 ~~~l~v~~~~tV~~lK~~i~~~~-g--ip~---~~q~L~~~g--~~L~d~~tl~~y~i~~~s~i~l~~ 147 (457)
...+.|+..+|+.++=++++... | +++ ...++..+| ..+..+.++++-||.+-..|.+..
T Consensus 16 ~~Lv~VDt~dTmdqVA~k~A~HsVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~vev~~ 83 (85)
T PF06234_consen 16 LQLVPVDTEDTMDQVAAKVAHHSVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWVEVRF 83 (85)
T ss_dssp EEEEEEETT-BHHHHHHHHHTTTTTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEEEEEE
T ss_pred EEEEEeCCCCcHHHHHHHHhhhhcceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEEEEEE
Confidence 35678999999999999998753 4 332 346677888 889999999999998877776654
No 329
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=21.63 E-value=1.2e+02 Score=22.92 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=28.0
Q ss_pred chHHHHHHHHhhhcCCCCCCeE--EEECCeEcCCCCc
Q 012759 401 DTIDNVKAKIQDKEGIPPDQQR--LIFAGKQLEDGRT 435 (457)
Q Consensus 401 ~tV~~lK~~i~~~~gip~~~q~--l~~~g~~L~d~~t 435 (457)
.+.++|+.+.++..+++...-+ |.-+|..++++.-
T Consensus 21 ~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~Eey 57 (78)
T cd06539 21 SSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEEF 57 (78)
T ss_pred cCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHHH
Confidence 5899999999999999865444 4568999987753
No 330
>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism]
Probab=20.99 E-value=1.4e+02 Score=26.66 Aligned_cols=44 Identities=20% Similarity=0.366 Sum_probs=28.5
Q ss_pred ccccceeEEEEecCceEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhC
Q 012759 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG 111 (457)
Q Consensus 62 ~~~sti~l~~~~~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~g 111 (457)
..++|+|++..-.+.-.+.+ ...+.|.+.||++++-++++..+.
T Consensus 139 ~~GctvHfV~EevD~G~iI~------q~~v~V~~~Dt~esl~qrv~~aEH 182 (206)
T KOG3076|consen 139 LSGCTVHFVIEEVDTGPIIA------QMAVPVIPGDTLESLEQRVHDAEH 182 (206)
T ss_pred cccceEEEehhhccCCCceE------EEeeeecCCCCHHHHHHHHHHHHH
Confidence 35566666654332222222 235778999999999999987654
No 331
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=20.94 E-value=4.2e+02 Score=21.43 Aligned_cols=44 Identities=20% Similarity=0.198 Sum_probs=0.0
Q ss_pred eeeEEEcCCCC--EEEEEecCCchHHHHHHHHhhhcCCC-----CCCeEEE
Q 012759 381 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEGIP-----PDQQRLI 424 (457)
Q Consensus 381 ~~i~v~~~~g~--~~~l~v~~~~tV~~lK~~i~~~~gip-----~~~q~l~ 424 (457)
|..|.++..++ +-.+.|+.++|+.++.+.+-+++.+. +..+-|+
T Consensus 24 mrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d~~~~s~p~FALY 74 (112)
T cd01782 24 MRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRPDMRMLSNPTYSLY 74 (112)
T ss_pred EEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhcccccccCCcceEEE
No 332
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=20.65 E-value=3.8e+02 Score=23.08 Aligned_cols=106 Identities=23% Similarity=0.359 Sum_probs=67.9
Q ss_pred EeecCccHHHHHHHhhhhcCCCCCCceEEecCeeccCCCcccccccccCc----eEEEEEE-ecCceeeEEEcCCCCEEE
Q 012759 320 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES----TLHLVLR-LRGGMQIFVKTLTGKTIT 394 (457)
Q Consensus 320 ~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~l~~~~i~~~~----~l~l~~~-~~~~~~i~v~~~~g~~~~ 394 (457)
.+-.-+|.+.|=..|.+..|| .+.+.+|..|.... .||...|. .-+-... ....+.+.|+. | .+.
T Consensus 9 R~L~peTtEklLN~l~~i~GI----~R~vi~Gp~LPk~V---pyGPa~G~pv~h~~Rk~I~V~g~~veL~V~v--G-ri~ 78 (153)
T PF02505_consen 9 RLLKPETTEKLLNELYSIEGI----RRVVIHGPRLPKTV---PYGPARGTPVNHPDRKVINVGGEEVELTVKV--G-RII 78 (153)
T ss_pred hcCCHHHHHHHHHHHhccCCE----EEEEEECCCCCCCC---CCCCCCCCcCCCCcceEEEECCEEEEEEEEE--e-EEE
Confidence 334567888888888887664 45677787776554 45554333 2221111 13445666654 5 377
Q ss_pred EEecC-CchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCccccc
Q 012759 395 LEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439 (457)
Q Consensus 395 l~v~~-~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~ 439 (457)
+++.. .+.+.++++...+.+..+- . +..|+-+....|+.||
T Consensus 79 lele~~~~~ie~I~~iCee~lpf~y---~-i~~G~f~r~~~TvtDY 120 (153)
T PF02505_consen 79 LELEDEEDVIEKIREICEEVLPFGY---D-IKEGKFIRTKPTVTDY 120 (153)
T ss_pred EEecCcHHHHHHHHHHHHHhCCCce---E-eeeeEEeccCCchhhh
Confidence 88888 7888888888777653322 2 2369999999999988
No 333
>CHL00030 rpl23 ribosomal protein L23
Probab=20.52 E-value=1.2e+02 Score=23.79 Aligned_cols=33 Identities=21% Similarity=0.157 Sum_probs=29.4
Q ss_pred CcEEEEEeecCccHHHHHHHhhhhcCCCCCCce
Q 012759 314 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 346 (457)
Q Consensus 314 g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~ 346 (457)
.+.+++.|++.+|=.++|+.|+..+++.+..-+
T Consensus 19 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~VN 51 (93)
T CHL00030 19 KNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVN 51 (93)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEE
Confidence 478999999999999999999999999887533
Done!