Query 012759
Match_columns 457
No_of_seqs 480 out of 2992
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 15:41:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012759.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012759hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rt3_B Ubiquitin-like protein 100.0 1.3E-35 4.3E-40 260.5 17.0 153 1-153 3-158 (159)
2 3rt3_B Ubiquitin-like protein 100.0 6.6E-35 2.3E-39 255.9 18.6 153 305-457 3-158 (159)
3 3u30_A Ubiquitin, linear DI-ub 100.0 6.1E-35 2.1E-39 259.3 15.8 152 1-152 21-172 (172)
4 3u30_A Ubiquitin, linear DI-ub 100.0 3E-34 1E-38 254.8 17.6 155 302-456 18-172 (172)
5 3b08_A Polyubiquitin-C, ubiqui 100.0 6.4E-33 2.2E-37 241.5 17.6 152 1-152 1-152 (152)
6 3b08_A Polyubiquitin-C, ubiqui 100.0 2.1E-32 7.2E-37 238.3 19.0 152 305-456 1-152 (152)
7 3phx_B Ubiquitin-like protein 99.8 1.8E-19 6E-24 138.1 10.5 77 379-455 3-79 (79)
8 3plu_A Ubiquitin-like modifier 99.8 1.4E-19 4.9E-24 139.1 8.5 70 1-70 22-91 (93)
9 4fbj_B NEDD8; effector-HOST ta 99.8 2.1E-19 7.3E-24 140.4 9.3 77 381-457 1-77 (88)
10 3plu_A Ubiquitin-like modifier 99.8 3.1E-19 1.1E-23 137.3 9.8 79 373-451 14-92 (93)
11 1ndd_A NEDD8, protein (ubiquit 99.8 8.3E-19 2.8E-23 133.2 9.8 76 381-456 1-76 (76)
12 2uyz_B Small ubiquitin-related 99.8 5.2E-19 1.8E-23 135.5 8.5 77 380-456 3-79 (79)
13 3dbh_I NEDD8; cell cycle, acti 99.8 6.5E-19 2.2E-23 137.9 9.0 79 378-456 10-88 (88)
14 4hcn_B Polyubiquitin, ubiquiti 99.8 1.1E-18 3.9E-23 139.2 9.4 79 378-456 20-98 (98)
15 3phx_B Ubiquitin-like protein 99.8 1.2E-18 4.1E-23 133.5 8.9 75 1-75 5-79 (79)
16 1wyw_B Ubiquitin-like protein 99.8 1.1E-18 3.8E-23 138.9 8.9 79 378-456 19-97 (97)
17 3a9j_A Ubiquitin; protein comp 99.8 2.4E-18 8.1E-23 130.7 10.1 76 381-456 1-76 (76)
18 4eew_A Large proline-rich prot 99.8 1.7E-18 6E-23 135.4 9.5 88 364-452 1-88 (88)
19 1wh3_A 59 kDa 2'-5'-oligoadeny 99.8 2.1E-18 7.2E-23 134.7 9.9 80 378-457 5-84 (87)
20 3n3k_B Ubiquitin; hydrolase, p 99.8 1.5E-18 5.2E-23 134.9 9.0 79 379-457 2-80 (85)
21 1sif_A Ubiquitin; hydrophobic 99.8 1.6E-18 5.4E-23 135.5 9.1 79 379-457 8-86 (88)
22 2kdi_A Ubiquitin, vacuolar pro 99.8 1.2E-19 4E-24 148.7 1.9 103 75-177 8-113 (114)
23 3mtn_B UBA80, ubcep1, ubiquiti 99.8 3.5E-18 1.2E-22 132.8 10.0 78 379-456 2-79 (85)
24 3k9o_B Ubiquitin, UBB+1; E2-25 99.8 3.3E-18 1.1E-22 136.2 9.9 78 380-457 1-78 (96)
25 1uh6_A Ubiquitin-like 5; beta- 99.7 1.7E-18 5.7E-23 136.2 7.3 70 1-70 29-98 (100)
26 4fbj_B NEDD8; effector-HOST ta 99.7 2.7E-18 9.2E-23 134.1 8.4 77 1-77 1-77 (88)
27 2l7r_A Ubiquitin-like protein 99.7 2.6E-18 8.9E-23 135.6 8.3 77 378-456 17-93 (93)
28 2kan_A Uncharacterized protein 99.7 4.7E-18 1.6E-22 134.2 9.6 79 378-457 13-92 (94)
29 2kdi_A Ubiquitin, vacuolar pro 99.7 5.8E-20 2E-24 150.5 -1.5 100 1-100 10-112 (114)
30 2lxa_A Ubiquitin-like protein 99.7 2E-18 6.8E-23 133.5 6.9 74 1-74 2-79 (87)
31 2hj8_A Interferon-induced 17 k 99.7 2.9E-18 1E-22 134.0 7.7 78 379-456 3-80 (88)
32 3vdz_A Ubiquitin-40S ribosomal 99.7 7.2E-18 2.5E-22 137.5 10.4 78 379-456 34-111 (111)
33 1wy8_A NP95-like ring finger p 99.7 9.4E-18 3.2E-22 131.6 10.4 79 379-457 6-86 (89)
34 1yx5_B Ubiquitin; proteasome, 99.7 6E-18 2E-22 135.1 9.2 91 1-91 1-91 (98)
35 2kk8_A Uncharacterized protein 99.7 4.5E-18 1.6E-22 131.3 7.8 73 1-73 11-84 (84)
36 2ojr_A Ubiquitin; lanthide-bin 99.7 7.7E-18 2.6E-22 137.5 9.1 78 379-456 34-111 (111)
37 4eew_A Large proline-rich prot 99.7 6.3E-18 2.2E-22 132.2 8.1 87 61-148 2-88 (88)
38 3v6c_B Ubiquitin; structural g 99.7 1.4E-17 4.7E-22 131.1 9.9 77 378-454 15-91 (91)
39 4ajy_B Transcription elongatio 99.7 7.5E-18 2.6E-22 135.5 7.8 75 1-75 1-83 (118)
40 2uyz_B Small ubiquitin-related 99.7 7.5E-18 2.6E-22 129.0 7.2 76 1-76 4-79 (79)
41 4dwf_A HLA-B-associated transc 99.7 2E-17 6.9E-22 129.9 9.8 78 378-456 3-80 (90)
42 2fnj_B Transcription elongatio 99.7 7.2E-18 2.5E-22 136.4 7.4 72 1-72 1-80 (118)
43 1yx5_B Ubiquitin; proteasome, 99.7 3.4E-17 1.1E-21 130.7 10.1 77 381-457 1-77 (98)
44 1wyw_B Ubiquitin-like protein 99.7 1.2E-17 4.2E-22 132.8 7.3 76 1-76 22-97 (97)
45 1uh6_A Ubiquitin-like 5; beta- 99.7 1.9E-17 6.6E-22 130.1 7.7 73 379-451 27-99 (100)
46 3l0w_B Monoubiquitinated proli 99.7 4.3E-17 1.5E-21 142.9 10.5 77 381-457 1-77 (169)
47 2faz_A Ubiquitin-like containi 99.7 5.2E-17 1.8E-21 123.9 9.7 75 379-453 1-77 (78)
48 1ndd_A NEDD8, protein (ubiquit 99.7 4.2E-17 1.4E-21 123.7 9.1 76 1-76 1-76 (76)
49 2kk8_A Uncharacterized protein 99.7 3.2E-17 1.1E-21 126.5 8.4 73 380-452 10-83 (84)
50 4dwf_A HLA-B-associated transc 99.7 3E-17 1E-21 128.9 8.4 74 1-75 6-79 (90)
51 3dbh_I NEDD8; cell cycle, acti 99.7 2.9E-17 9.7E-22 128.5 7.9 76 1-76 13-88 (88)
52 2fnj_B Transcription elongatio 99.7 2.7E-17 9.2E-22 133.0 7.6 75 381-456 1-83 (118)
53 1we6_A Splicing factor, putati 99.7 3.3E-17 1.1E-21 133.8 8.2 79 378-456 25-107 (111)
54 2faz_A Ubiquitin-like containi 99.7 3.7E-17 1.3E-21 124.8 8.0 73 1-73 3-77 (78)
55 1se9_A Ubiquitin family; ubiqu 99.7 3.8E-17 1.3E-21 133.7 8.4 76 1-76 17-106 (126)
56 1sif_A Ubiquitin; hydrophobic 99.7 4.7E-17 1.6E-21 127.0 8.4 76 1-76 10-85 (88)
57 3v6c_B Ubiquitin; structural g 99.7 4.2E-17 1.4E-21 128.3 8.2 74 1-74 18-91 (91)
58 1wgd_A Homocysteine-responsive 99.7 4.8E-17 1.7E-21 128.5 8.4 78 379-456 6-89 (93)
59 3b1l_X E3 ubiquitin-protein li 99.5 1.8E-18 6.1E-23 131.4 0.0 75 381-455 1-75 (76)
60 4hcn_B Polyubiquitin, ubiquiti 99.7 5.2E-17 1.8E-21 129.5 8.5 76 1-76 23-98 (98)
61 2hj8_A Interferon-induced 17 k 99.7 2.8E-17 9.6E-22 128.4 6.6 76 1-76 5-80 (88)
62 3q3f_A Ribonuclease/ubiquitin 99.7 7.6E-17 2.6E-21 142.6 9.6 81 377-457 102-182 (189)
63 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 9.5E-17 3.3E-21 127.7 9.0 79 1-79 2-80 (96)
64 4ajy_B Transcription elongatio 99.7 8.4E-17 2.9E-21 129.4 8.6 77 381-457 1-85 (118)
65 3n3k_B Ubiquitin; hydrolase, p 99.7 7.5E-17 2.6E-21 125.2 8.1 76 1-76 4-79 (85)
66 1wgh_A Ubiquitin-like 3, HCG-1 99.7 8E-17 2.7E-21 130.8 8.5 74 1-74 17-100 (116)
67 2dzi_A Ubiquitin-like protein 99.7 1.4E-16 4.7E-21 122.5 9.3 77 378-454 5-81 (81)
68 2kan_A Uncharacterized protein 99.7 7.9E-17 2.7E-21 127.1 8.0 75 1-76 16-91 (94)
69 3a9j_A Ubiquitin; protein comp 99.7 1.5E-16 5E-21 120.7 9.1 76 1-76 1-76 (76)
70 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 9.6E-17 3.3E-21 125.2 8.1 76 1-76 8-83 (87)
71 2lxa_A Ubiquitin-like protein 99.7 6.3E-17 2.1E-21 125.1 6.8 74 380-453 1-78 (87)
72 3l0w_B Monoubiquitinated proli 99.7 1.1E-16 3.7E-21 140.3 9.1 125 1-128 1-128 (169)
73 3q3f_A Ribonuclease/ubiquitin 99.7 3.7E-17 1.3E-21 144.6 6.1 82 1-82 106-187 (189)
74 1yqb_A Ubiquilin 3; structural 99.7 1.5E-16 5E-21 127.1 8.9 78 378-456 20-97 (100)
75 1wju_A NEDD8 ultimate buster-1 99.7 1.2E-16 4.3E-21 125.5 8.1 66 390-456 29-94 (100)
76 4a20_A Ubiquitin-like protein 99.7 1.3E-16 4.4E-21 126.1 8.0 72 1-72 20-95 (98)
77 1wx8_A Riken cDNA 4931431F19; 99.7 8.9E-17 3.1E-21 127.8 7.0 77 379-456 16-92 (96)
78 3mtn_B UBA80, ubcep1, ubiquiti 99.7 1.7E-16 5.7E-21 123.2 8.4 76 1-76 4-79 (85)
79 1v2y_A 3300001G02RIK protein; 99.7 3.5E-17 1.2E-21 130.5 4.5 76 1-76 8-99 (105)
80 2l7r_A Ubiquitin-like protein 99.7 1.4E-16 4.6E-21 125.7 7.8 74 1-76 20-93 (93)
81 1wy8_A NP95-like ring finger p 99.7 1.8E-16 6E-21 124.2 8.4 76 1-76 8-85 (89)
82 3b1l_X E3 ubiquitin-protein li 99.5 6.6E-18 2.3E-22 128.3 0.0 75 1-75 1-75 (76)
83 2wyq_A HHR23A, UV excision rep 99.7 4.3E-16 1.5E-20 120.9 10.3 76 378-453 3-81 (85)
84 3m62_B UV excision repair prot 99.7 1.4E-16 4.9E-21 128.6 7.4 74 1-74 2-75 (106)
85 3vdz_A Ubiquitin-40S ribosomal 99.7 2.4E-16 8.3E-21 128.4 8.6 76 1-76 36-111 (111)
86 1se9_A Ubiquitin family; ubiqu 99.7 3E-16 1E-20 128.4 9.1 79 378-456 14-106 (126)
87 1uel_A HHR23B, UV excision rep 99.7 6.3E-16 2.1E-20 122.5 10.7 75 381-455 1-78 (95)
88 1we7_A SF3A1 protein; structur 99.7 3.3E-16 1.1E-20 128.6 9.4 69 389-457 44-112 (115)
89 1v2y_A 3300001G02RIK protein; 99.6 1.1E-16 3.7E-21 127.6 6.1 78 379-456 6-99 (105)
90 3u5e_m 60S ribosomal protein L 99.6 1.1E-17 3.6E-22 140.2 0.0 77 381-457 1-77 (128)
91 1j8c_A Ubiquitin-like protein 99.6 5.9E-16 2E-20 128.5 10.1 77 379-456 31-107 (125)
92 1uel_A HHR23B, UV excision rep 99.6 5.3E-16 1.8E-20 122.9 9.4 73 1-73 1-76 (95)
93 3m62_B UV excision repair prot 99.6 3.5E-16 1.2E-20 126.3 8.4 75 380-454 1-75 (106)
94 2gow_A HCG-1 protein, ubiquiti 99.6 2.5E-16 8.4E-21 129.8 7.4 75 1-75 18-102 (125)
95 3u5c_f 40S ribosomal protein S 99.6 1.5E-17 5E-22 142.4 0.0 76 381-456 1-76 (152)
96 2wyq_A HHR23A, UV excision rep 99.6 5.1E-16 1.7E-20 120.5 8.7 73 1-73 6-81 (85)
97 2dzi_A Ubiquitin-like protein 99.6 5.4E-16 1.8E-20 119.1 8.5 73 1-73 8-80 (81)
98 4dbg_A Ranbp-type and C3HC4-ty 99.6 4.9E-16 1.7E-20 123.1 8.3 73 1-73 25-100 (105)
99 1wgh_A Ubiquitin-like 3, HCG-1 99.6 7.3E-16 2.5E-20 125.1 9.4 79 378-456 14-102 (116)
100 1wx7_A Ubiquilin 3; ubiquitin- 99.6 6.8E-16 2.3E-20 124.9 9.2 77 379-456 16-92 (106)
101 1wgd_A Homocysteine-responsive 99.6 4.1E-16 1.4E-20 123.1 7.7 76 1-76 8-89 (93)
102 1v5o_A 1700011N24RIK protein; 99.6 4.3E-16 1.5E-20 125.0 7.9 78 379-456 6-88 (102)
103 4a20_A Ubiquitin-like protein 99.6 8.2E-16 2.8E-20 121.5 9.3 76 378-453 17-96 (98)
104 1wju_A NEDD8 ultimate buster-1 99.6 5.1E-16 1.7E-20 122.0 8.0 71 4-75 19-93 (100)
105 2bwf_A Ubiquitin-like protein 99.6 1.1E-15 3.6E-20 116.3 9.6 71 381-452 5-75 (77)
106 1ttn_A DC-UBP, dendritic cell- 99.6 8.1E-16 2.8E-20 124.3 9.4 79 378-456 21-99 (106)
107 2klc_A Ubiquilin-1; ubiquitin- 99.6 1.6E-15 5.3E-20 121.4 10.4 79 377-456 22-100 (101)
108 3m63_B Ubiquitin domain-contai 99.6 2.4E-16 8.1E-21 126.1 5.0 91 359-452 9-99 (101)
109 2bwf_A Ubiquitin-like protein 99.6 1.3E-15 4.3E-20 115.9 8.3 72 1-73 5-76 (77)
110 2gow_A HCG-1 protein, ubiquiti 99.6 1.3E-15 4.6E-20 125.4 8.9 78 379-456 16-103 (125)
111 3m63_B Ubiquitin domain-contai 99.6 3.9E-16 1.3E-20 124.8 5.3 93 129-224 7-99 (101)
112 2kdb_A Homocysteine-responsive 99.6 7.2E-16 2.5E-20 122.2 6.8 70 1-70 24-99 (99)
113 1ttn_A DC-UBP, dendritic cell- 99.6 9.3E-16 3.2E-20 124.0 7.5 74 1-74 24-97 (106)
114 2ojr_A Ubiquitin; lanthide-bin 99.6 2E-15 6.8E-20 123.1 8.5 78 75-152 34-111 (111)
115 1yqb_A Ubiquilin 3; structural 99.6 1.7E-15 5.7E-20 120.9 7.8 74 1-75 23-96 (100)
116 1we6_A Splicing factor, putati 99.6 1.7E-15 5.9E-20 123.5 7.5 79 74-152 25-107 (111)
117 3u5e_m 60S ribosomal protein L 99.6 1E-16 3.5E-21 134.2 0.0 76 1-76 1-76 (128)
118 1wx8_A Riken cDNA 4931431F19; 99.6 1.3E-15 4.5E-20 121.0 6.3 75 1-76 18-92 (96)
119 3u5c_f 40S ribosomal protein S 99.6 1.2E-16 4.3E-21 136.6 0.0 76 1-76 1-76 (152)
120 4dbg_A Ranbp-type and C3HC4-ty 99.6 7.5E-15 2.6E-19 116.3 9.6 73 380-452 24-99 (105)
121 2xzm_9 RPS31E; ribosome, trans 99.6 2.2E-16 7.6E-21 138.4 0.0 72 1-77 1-72 (189)
122 2klc_A Ubiquilin-1; ubiquitin- 99.6 6.4E-15 2.2E-19 117.8 8.5 73 1-74 26-98 (101)
123 1j8c_A Ubiquitin-like protein 99.6 5.7E-15 1.9E-19 122.6 8.4 75 1-76 33-107 (125)
124 1v5o_A 1700011N24RIK protein; 99.6 5E-15 1.7E-19 118.8 6.8 76 1-76 8-88 (102)
125 2xzm_9 RPS31E; ribosome, trans 99.5 4.2E-16 1.4E-20 136.7 0.0 72 381-457 1-72 (189)
126 2kdb_A Homocysteine-responsive 99.5 6.8E-15 2.3E-19 116.5 6.9 72 379-450 22-99 (99)
127 1wx7_A Ubiquilin 3; ubiquitin- 99.5 8.8E-15 3E-19 118.3 7.7 74 1-75 18-91 (106)
128 2io1_B Small ubiquitin-related 99.5 2.3E-14 7.8E-19 112.4 9.2 80 378-457 5-84 (94)
129 2dzm_A FAS-associated factor 1 99.5 5.7E-15 2E-19 116.8 5.4 72 1-73 9-82 (100)
130 1we7_A SF3A1 protein; structur 99.5 1.6E-14 5.6E-19 118.4 7.9 79 74-152 23-111 (115)
131 2dzj_A Synaptic glycoprotein S 99.5 8.6E-15 2.9E-19 113.6 5.5 69 1-69 11-85 (88)
132 2kd0_A LRR repeats and ubiquit 99.5 3.6E-14 1.2E-18 109.7 8.8 69 383-451 14-82 (85)
133 1wia_A Hypothetical ubiquitin- 99.5 3.9E-14 1.3E-18 112.1 9.2 74 379-455 6-80 (95)
134 1v5t_A 8430435I17RIK protein; 99.5 3E-14 1E-18 111.4 7.7 73 379-452 6-82 (90)
135 2daf_A FLJ35834 protein; hypot 99.5 6.6E-14 2.2E-18 111.8 9.3 73 380-452 15-88 (118)
136 1v5t_A 8430435I17RIK protein; 99.5 2.9E-14 9.9E-19 111.5 6.9 72 1-73 8-83 (90)
137 1wia_A Hypothetical ubiquitin- 99.5 3.2E-14 1.1E-18 112.7 7.2 71 1-74 8-79 (95)
138 1x1m_A Ubiquitin-like protein 99.5 6.4E-14 2.2E-18 113.3 8.5 76 379-454 11-101 (107)
139 2kd0_A LRR repeats and ubiquit 99.5 5E-14 1.7E-18 108.9 7.5 70 3-72 14-83 (85)
140 2io0_B Small ubiquitin-related 99.5 1.6E-13 5.4E-18 106.8 10.3 80 378-457 3-82 (91)
141 1wgg_A Ubiquitin carboxyl-term 99.5 4.9E-14 1.7E-18 111.5 7.0 71 1-73 8-79 (96)
142 1wgg_A Ubiquitin carboxyl-term 99.5 6E-14 2E-18 110.9 7.5 72 379-452 6-78 (96)
143 2dzm_A FAS-associated factor 1 99.5 3.6E-14 1.2E-18 112.2 6.1 74 380-454 8-83 (100)
144 2daf_A FLJ35834 protein; hypot 99.5 8E-14 2.7E-18 111.3 8.0 78 76-153 15-93 (118)
145 2kjr_A CG11242; UBL, ubiquitin 99.5 8.2E-14 2.8E-18 109.5 7.8 69 2-70 17-93 (95)
146 1x1m_A Ubiquitin-like protein 99.5 5.7E-14 2E-18 113.6 7.0 73 1-73 13-100 (107)
147 1wxv_A BAG-family molecular ch 99.5 1.5E-13 5E-18 108.1 8.6 74 379-453 6-85 (92)
148 3ai5_A Yeast enhanced green fl 99.5 1.3E-13 4.5E-18 130.6 9.7 77 378-454 231-307 (307)
149 2kjr_A CG11242; UBL, ubiquitin 99.5 2E-13 6.7E-18 107.3 8.9 72 379-450 14-93 (95)
150 4b6w_A Tubulin-specific chaper 99.5 8.5E-14 2.9E-18 107.4 6.6 70 3-72 5-83 (86)
151 2dzj_A Synaptic glycoprotein S 99.5 7.4E-14 2.5E-18 108.3 6.1 70 380-449 10-85 (88)
152 2d07_B Ubiquitin-like protein 99.4 5.4E-13 1.9E-17 104.5 9.7 79 378-456 15-93 (93)
153 3ai5_A Yeast enhanced green fl 99.4 2.1E-13 7.2E-18 129.2 8.2 74 1-74 234-307 (307)
154 1v86_A DNA segment, CHR 7, way 99.4 1.2E-13 4.1E-18 109.1 5.0 72 379-452 16-87 (95)
155 4b6w_A Tubulin-specific chaper 99.4 3.7E-13 1.3E-17 103.7 7.3 67 160-226 12-85 (86)
156 1wxv_A BAG-family molecular ch 99.4 3.9E-13 1.3E-17 105.7 7.3 72 1-73 8-85 (92)
157 1v86_A DNA segment, CHR 7, way 99.4 2E-13 6.9E-18 107.8 5.1 70 1-72 18-87 (95)
158 2kj6_A Tubulin folding cofacto 99.4 4.2E-13 1.4E-17 105.7 6.4 70 2-71 16-94 (97)
159 2kj6_A Tubulin folding cofacto 99.4 6.2E-13 2.1E-17 104.7 7.4 72 380-451 14-94 (97)
160 1wz0_A Ubiquitin-like protein 99.4 8.2E-13 2.8E-17 105.2 8.0 79 379-457 23-101 (104)
161 2io1_B Small ubiquitin-related 99.4 7.8E-13 2.7E-17 103.7 7.6 76 1-76 8-83 (94)
162 1oqy_A HHR23A, UV excision rep 99.4 4.6E-13 1.6E-17 130.7 7.7 78 379-456 6-87 (368)
163 2eke_C Ubiquitin-like protein 99.4 1.6E-12 5.3E-17 103.6 9.0 77 379-456 30-106 (106)
164 1oqy_A HHR23A, UV excision rep 99.4 5.9E-13 2E-17 129.9 7.1 75 1-75 8-86 (368)
165 1wf9_A NPL4 family protein; be 99.3 8.1E-13 2.8E-17 106.7 5.6 71 1-72 8-94 (107)
166 1v6e_A Cytoskeleton-associated 99.3 2.3E-12 7.8E-17 101.7 7.5 71 381-451 8-86 (95)
167 1wf9_A NPL4 family protein; be 99.3 1E-12 3.6E-17 106.0 5.3 72 380-452 7-94 (107)
168 2k8h_A Small ubiquitin protein 99.3 1.6E-12 5.5E-17 104.4 6.1 79 378-456 24-102 (110)
169 1v6e_A Cytoskeleton-associated 99.3 4.7E-12 1.6E-16 100.0 7.1 70 2-71 9-86 (95)
170 1wm3_A Ubiquitin-like protein 99.3 1.3E-11 4.5E-16 91.9 9.2 70 381-450 2-71 (72)
171 2io0_B Small ubiquitin-related 99.3 1.2E-11 4.1E-16 96.1 8.2 76 1-76 6-81 (91)
172 1t0y_A Tubulin folding cofacto 99.2 1.9E-11 6.3E-16 101.1 8.7 72 380-451 6-85 (122)
173 1t0y_A Tubulin folding cofacto 99.2 1.5E-11 5E-16 101.7 7.6 71 2-72 8-86 (122)
174 2kzr_A Ubiquitin thioesterase 99.2 8.6E-12 2.9E-16 96.5 5.7 71 381-452 1-77 (86)
175 3a4r_A Nfatc2-interacting prot 99.2 5E-11 1.7E-15 90.3 9.5 73 378-450 5-78 (79)
176 1wm3_A Ubiquitin-like protein 99.2 2.5E-11 8.4E-16 90.4 7.4 70 1-70 2-71 (72)
177 2d07_B Ubiquitin-like protein 99.2 3.9E-11 1.3E-15 93.9 8.1 75 1-75 18-92 (93)
178 2kzr_A Ubiquitin thioesterase 99.2 2.5E-11 8.5E-16 93.9 5.5 70 1-71 1-76 (86)
179 1wz0_A Ubiquitin-like protein 99.1 5.2E-11 1.8E-15 94.8 6.4 76 1-76 25-100 (104)
180 3a4r_A Nfatc2-interacting prot 99.1 1.3E-10 4.5E-15 88.0 8.0 70 1-70 8-78 (79)
181 2k8h_A Small ubiquitin protein 99.1 4.6E-11 1.6E-15 95.9 5.5 77 1-77 27-103 (110)
182 2eke_C Ubiquitin-like protein 99.1 1.1E-10 3.8E-15 92.9 7.4 74 1-75 32-105 (106)
183 3shq_A UBLCP1; phosphatase, hy 99.1 1E-10 3.4E-15 112.6 7.6 70 305-375 6-78 (320)
184 3shq_A UBLCP1; phosphatase, hy 99.1 8.6E-11 2.9E-15 113.0 6.4 75 76-151 5-82 (320)
185 3kyd_D Small ubiquitin-related 99.0 1.7E-09 5.9E-14 86.8 10.4 77 379-455 39-115 (115)
186 1wjn_A Tubulin-folding protein 99.0 1.1E-09 3.6E-14 86.7 8.8 72 380-451 9-91 (97)
187 2ylm_A Ubiquitin carboxyl-term 99.0 9E-07 3.1E-11 91.1 31.1 346 89-435 38-502 (530)
188 3pge_A SUMO-modified prolifera 98.9 3.1E-09 1.1E-13 94.0 9.5 78 379-457 28-105 (200)
189 3tix_A Ubiquitin-like protein 98.9 2.3E-09 7.7E-14 92.5 7.6 78 379-457 56-133 (207)
190 1wjn_A Tubulin-folding protein 98.8 9.3E-09 3.2E-13 81.2 7.8 73 76-148 9-92 (97)
191 3v7o_A Minor nucleoprotein VP3 98.8 6.8E-10 2.3E-14 97.1 0.3 80 377-457 18-97 (227)
192 2ylm_A Ubiquitin carboxyl-term 98.7 1.2E-05 4.1E-10 82.7 29.9 331 11-343 36-479 (530)
193 3kyd_D Small ubiquitin-related 98.7 1.1E-07 3.9E-12 76.2 9.5 73 228-300 40-112 (115)
194 3goe_A DNA repair protein RAD6 98.6 2.8E-07 9.5E-12 67.0 9.6 70 382-451 11-81 (82)
195 2pjh_A Protein NPL4, nuclear p 98.5 6.6E-08 2.3E-12 73.1 3.8 71 379-450 3-78 (80)
196 3pge_A SUMO-modified prolifera 98.4 9.3E-07 3.2E-11 78.2 10.5 99 227-327 28-130 (200)
197 3tix_A Ubiquitin-like protein 98.4 6.3E-07 2.2E-11 77.4 7.5 76 228-304 57-132 (207)
198 2jxx_A Nfatc2-interacting prot 98.4 1.8E-06 6.1E-11 67.3 8.9 73 378-450 23-96 (97)
199 3ix6_A TS, tsase, thymidylate 98.3 6.6E-08 2.3E-12 92.9 0.2 79 378-457 19-97 (360)
200 3uf8_A Ubiquitin-like protein 98.3 2.1E-06 7.2E-11 77.4 8.8 79 378-457 19-97 (209)
201 3v7o_A Minor nucleoprotein VP3 98.2 1.4E-07 4.9E-12 82.5 0.1 83 70-153 15-97 (227)
202 4efo_A Serine/threonine-protei 98.2 3.5E-06 1.2E-10 64.8 7.5 55 7-61 20-76 (94)
203 2pjh_A Protein NPL4, nuclear p 98.1 1.5E-06 5.2E-11 65.5 3.6 71 75-146 3-78 (80)
204 3goe_A DNA repair protein RAD6 98.1 2.2E-05 7.5E-10 57.1 9.3 71 153-223 10-81 (82)
205 4efo_A Serine/threonine-protei 98.1 1.3E-05 4.3E-10 61.6 7.8 44 388-431 21-64 (94)
206 2l76_A Nfatc2-interacting prot 98.0 2.4E-05 8.2E-10 59.8 8.7 72 379-451 20-91 (95)
207 3ivf_A Talin-1; FERM domain, c 97.9 0.0004 1.4E-08 68.3 18.1 136 314-452 12-167 (371)
208 2al3_A TUG long isoform; TUG U 97.9 2.7E-05 9.1E-10 59.0 7.2 75 227-301 8-82 (90)
209 3ivf_A Talin-1; FERM domain, c 97.9 0.00054 1.8E-08 67.4 18.6 135 162-299 12-166 (371)
210 3uf8_A Ubiquitin-like protein 97.8 7.8E-05 2.7E-09 67.1 10.3 90 227-318 20-109 (209)
211 2jxx_A Nfatc2-interacting prot 97.8 6.8E-05 2.3E-09 58.3 8.5 70 229-298 26-96 (97)
212 4da1_A Protein phosphatase 1K, 97.8 2.6E-06 8.9E-11 84.6 0.0 77 380-457 30-106 (389)
213 2al3_A TUG long isoform; TUG U 97.8 7.8E-05 2.7E-09 56.4 7.6 74 379-452 8-81 (90)
214 3ix6_A TS, tsase, thymidylate 97.7 4.5E-06 1.5E-10 80.3 -0.0 87 70-157 15-101 (360)
215 2kc2_A Talin-1, F1; FERM, adhe 97.6 7.2E-05 2.5E-09 61.0 5.9 71 306-376 13-122 (128)
216 2kc2_A Talin-1, F1; FERM, adhe 97.5 0.00012 4.1E-09 59.7 5.6 71 382-452 13-122 (128)
217 2l76_A Nfatc2-interacting prot 97.5 0.00054 1.9E-08 52.3 8.3 70 229-299 22-91 (95)
218 2bps_A YUKD protein; ubiquitin 97.4 0.00045 1.5E-08 51.5 6.6 62 388-449 14-80 (81)
219 3qx1_A FAS-associated factor 1 97.1 0.0029 9.8E-08 47.9 8.5 72 379-451 6-82 (84)
220 4da1_A Protein phosphatase 1K, 97.1 8.9E-05 3E-09 73.5 0.0 82 75-157 29-110 (389)
221 3qx1_A FAS-associated factor 1 96.7 0.0076 2.6E-07 45.5 8.4 70 305-375 8-82 (84)
222 2bps_A YUKD protein; ubiquitin 96.6 0.0066 2.2E-07 45.2 7.1 64 310-373 12-80 (81)
223 1wj4_A KIAA0794 protein; UBX d 96.0 0.016 5.4E-07 47.2 7.0 72 379-451 42-118 (124)
224 2dzk_A UBX domain-containing p 96.0 0.028 9.7E-07 44.6 8.3 74 379-452 12-90 (109)
225 2dzk_A UBX domain-containing p 95.8 0.038 1.3E-06 43.8 8.4 72 305-376 14-90 (109)
226 1wj4_A KIAA0794 protein; UBX d 95.7 0.028 9.5E-07 45.7 7.3 71 305-376 44-119 (124)
227 1ryj_A Unknown; beta/alpha pro 95.5 0.14 4.7E-06 36.9 9.7 67 380-456 4-70 (70)
228 2daj_A KIAA0977 protein, COBL- 95.0 0.037 1.3E-06 40.8 4.9 64 380-443 10-76 (91)
229 4e71_A Plexin-B2, MM1; transme 94.7 0.045 1.5E-06 43.1 5.3 64 9-72 22-110 (111)
230 4e71_A Plexin-B2, MM1; transme 94.6 0.14 4.9E-06 40.2 7.7 62 162-223 23-109 (111)
231 2cr5_A Reproduction 8; UBX dom 94.5 0.11 3.8E-06 41.1 7.3 71 380-451 23-97 (109)
232 2juo_A GA-binding protein alph 94.4 0.24 8.2E-06 36.4 8.0 58 241-298 5-62 (89)
233 4a3p_A Ubiquitin carboxyl-term 94.2 0.084 2.9E-06 47.4 6.6 65 392-456 141-212 (217)
234 3jyu_A Ubiquitin carboxyl-term 94.1 0.14 4.9E-06 46.3 8.0 65 392-456 153-224 (231)
235 1s3s_G P47 protein; AAA ATPase 94.1 0.13 4.4E-06 41.9 6.9 69 379-447 51-123 (127)
236 2cr5_A Reproduction 8; UBX dom 93.8 0.21 7.2E-06 39.4 7.6 71 152-223 23-97 (109)
237 2r2o_A Plexin-B1; effector dom 93.5 0.21 7.3E-06 40.6 7.0 65 10-74 40-130 (138)
238 3h6n_A Plexin-D1; structural g 93.5 0.37 1.3E-05 38.6 8.3 67 6-72 12-104 (127)
239 2r2o_A Plexin-B1; effector dom 93.4 0.36 1.2E-05 39.3 8.3 65 162-226 40-130 (138)
240 2juo_A GA-binding protein alph 93.3 0.36 1.2E-05 35.5 7.3 61 393-453 5-65 (89)
241 2l32_A Small archaeal modifier 93.2 0.18 6.3E-06 36.7 5.8 66 381-456 1-66 (74)
242 3h6n_A Plexin-D1; structural g 93.1 0.68 2.3E-05 37.1 9.4 64 389-452 15-104 (127)
243 1s3s_G P47 protein; AAA ATPase 92.5 0.3 1E-05 39.7 6.8 68 152-219 52-123 (127)
244 1oey_A P67-PHOX, neutrophil cy 92.3 0.29 9.8E-06 36.4 5.8 47 379-427 4-50 (83)
245 4e74_A Plexin-A4; RBD, structu 91.7 0.41 1.4E-05 38.0 6.4 63 10-72 26-114 (117)
246 2daj_A KIAA0977 protein, COBL- 91.6 0.38 1.3E-05 35.5 5.5 63 153-215 11-76 (91)
247 4e74_A Plexin-A4; RBD, structu 91.3 0.71 2.4E-05 36.6 7.4 64 162-225 26-115 (117)
248 1vjk_A Molybdopterin convertin 91.0 1.6 5.4E-05 33.5 9.2 73 379-456 8-98 (98)
249 1tyg_B YJBS; alpha beta barrel 90.8 0.78 2.7E-05 34.5 6.9 68 379-456 19-87 (87)
250 3rpf_C Molybdopterin convertin 89.6 1.3 4.4E-05 32.0 7.2 58 394-456 15-74 (74)
251 1oey_A P67-PHOX, neutrophil cy 89.5 0.85 2.9E-05 33.8 6.0 45 307-351 6-50 (83)
252 2l32_A Small archaeal modifier 89.3 1.1 3.6E-05 32.6 6.4 60 305-374 1-60 (74)
253 3kuz_A Plexin-C1; structural g 89.2 1.6 5.5E-05 34.8 7.7 60 87-146 39-124 (126)
254 3jyu_A Ubiquitin carboxyl-term 87.7 1 3.5E-05 40.6 6.7 64 88-151 153-223 (231)
255 3kuz_A Plexin-C1; structural g 86.7 2.3 8E-05 33.9 7.3 61 163-223 39-125 (126)
256 1f0z_A THis protein; ubiquitin 86.5 1.2 4.2E-05 31.3 5.2 58 394-456 9-66 (66)
257 4a3p_A Ubiquitin carboxyl-term 86.4 1.1 3.7E-05 40.1 6.0 64 88-151 141-211 (217)
258 3po0_A Small archaeal modifier 85.8 3.8 0.00013 30.5 8.0 61 391-456 18-89 (89)
259 2kvr_A Ubiquitin carboxyl-term 84.0 0.99 3.4E-05 36.7 4.1 35 392-426 57-91 (130)
260 1ef1_A Moesin; membrane, FERM 83.2 4.7 0.00016 37.4 9.2 73 380-453 1-79 (294)
261 1fm0_D Molybdopterin convertin 83.0 3.2 0.00011 30.2 6.4 59 392-456 18-81 (81)
262 1h4r_A Merlin; FERM, neurofibr 82.6 4.5 0.00015 38.0 8.9 75 378-453 20-99 (314)
263 1vjk_A Molybdopterin convertin 82.5 5.9 0.0002 30.1 7.9 71 74-149 7-95 (98)
264 2kl0_A Putative thiamin biosyn 82.2 1.4 4.9E-05 31.8 4.0 60 389-456 6-65 (73)
265 3dwg_C 9.5 kDa culture filtrat 82.1 7.3 0.00025 29.2 8.3 65 390-456 16-93 (93)
266 2kvr_A Ubiquitin carboxyl-term 80.7 1.5 5.2E-05 35.6 4.1 36 11-46 56-91 (130)
267 2kmc_A Fermitin family homolog 80.3 11 0.00037 28.6 8.2 71 2-72 21-99 (102)
268 1ryj_A Unknown; beta/alpha pro 80.2 8.2 0.00028 27.3 7.5 63 76-148 4-66 (70)
269 2q5w_D Molybdopterin convertin 79.7 3.4 0.00012 29.8 5.4 59 392-456 17-77 (77)
270 2k5p_A THis protein, thiamine- 79.6 2.1 7.2E-05 31.3 4.1 58 394-456 9-69 (78)
271 3hm6_X Plexin-B1; structural g 78.5 4.9 0.00017 41.0 7.7 63 87-149 274-362 (644)
272 2cu3_A Unknown function protei 77.5 5.4 0.00018 27.7 5.7 60 389-456 5-64 (64)
273 3ig3_A Plxna3 protein; plexin 77.3 9.5 0.00032 38.9 9.3 65 162-226 246-336 (627)
274 3hm6_X Plexin-B1; structural g 76.7 4.5 0.00015 41.3 6.8 63 11-73 274-362 (644)
275 2i1j_A Moesin; FERM, coiled-co 74.7 11 0.00038 38.7 9.5 74 379-453 3-82 (575)
276 1rws_A Hypothetical protein PF 73.9 1.2 4.1E-05 32.5 1.4 54 394-456 24-77 (77)
277 3rpf_C Molybdopterin convertin 73.6 8.7 0.0003 27.4 6.1 70 77-151 1-73 (74)
278 1ef1_A Moesin; membrane, FERM 71.9 16 0.00054 33.8 9.1 70 229-299 2-77 (294)
279 1vd2_A Protein kinase C, IOTA 71.3 21 0.00073 26.6 7.8 48 76-124 6-54 (89)
280 3u52_E Phenol hydroxylase comp 71.1 18 0.00062 28.4 7.5 65 392-456 39-113 (119)
281 2g1e_A Hypothetical protein TA 71.0 14 0.00047 27.3 7.0 62 394-456 18-90 (90)
282 1h4r_A Merlin; FERM, neurofibr 71.0 19 0.00064 33.7 9.5 71 227-298 21-96 (314)
283 1vd2_A Protein kinase C, IOTA 70.3 16 0.00053 27.4 6.9 41 312-352 13-54 (89)
284 3ig3_A Plxna3 protein; plexin 69.6 14 0.00047 37.7 8.4 65 10-74 246-336 (627)
285 3qij_A Protein 4.1; cytoskelet 69.1 13 0.00043 34.7 7.7 75 378-452 15-95 (296)
286 1wgk_A Riken cDNA 2900073H19 p 68.5 35 0.0012 26.7 9.0 75 380-457 11-109 (114)
287 2inc_C TOUB protein; DIIRON, 4 66.6 35 0.0012 24.9 8.7 61 392-452 14-82 (83)
288 2i1j_A Moesin; FERM, coiled-co 65.7 20 0.00069 36.7 9.0 71 228-299 4-80 (575)
289 2kmm_A Guanosine-3',5'-BIS(dip 65.5 13 0.00043 26.2 5.5 61 1-70 1-61 (73)
290 1wgk_A Riken cDNA 2900073H19 p 65.2 38 0.0013 26.5 8.6 76 76-152 11-108 (114)
291 1y8x_B Ubiquitin-activating en 62.3 15 0.0005 28.1 5.4 59 392-450 6-82 (98)
292 2qjl_A URM1, ubiquitin-related 61.9 48 0.0017 24.9 9.2 65 391-456 20-99 (99)
293 1ip9_A BEM1 protein; ubiquitin 61.4 27 0.00094 25.7 6.4 37 75-112 11-47 (85)
294 4eut_A Serine/threonine-protei 61.1 28 0.00095 33.4 8.8 42 8-49 319-360 (396)
295 3qa8_A MGC80376 protein; kinas 60.7 7.1 0.00024 41.0 4.6 51 389-439 320-371 (676)
296 3ge3_C Toluene-4-monooxygenase 60.7 39 0.0013 24.7 7.0 60 392-451 16-82 (84)
297 1ip9_A BEM1 protein; ubiquitin 58.7 23 0.00079 26.1 5.7 44 379-425 11-54 (85)
298 3qij_A Protein 4.1; cytoskelet 57.0 25 0.00085 32.6 7.3 72 227-298 16-93 (296)
299 1wgr_A Growth factor receptor- 56.5 26 0.00091 26.7 6.0 41 75-115 8-48 (100)
300 4eut_A Serine/threonine-protei 55.6 19 0.00065 34.6 6.5 52 389-440 320-373 (396)
301 2lgx_A Fermitin family homolog 54.0 9.5 0.00033 29.4 3.0 70 2-72 28-102 (112)
302 1wgr_A Growth factor receptor- 53.5 28 0.00097 26.6 5.7 70 380-449 9-89 (100)
303 2kl0_A Putative thiamin biosyn 53.3 17 0.00057 26.0 4.2 57 312-376 5-61 (73)
304 2qjl_A URM1, ubiquitin-related 52.8 59 0.002 24.4 7.6 73 77-150 2-97 (99)
305 2kmm_A Guanosine-3',5'-BIS(dip 52.2 41 0.0014 23.4 6.3 62 381-451 1-62 (73)
306 1fm0_D Molybdopterin convertin 52.2 28 0.00096 24.9 5.5 54 240-299 18-76 (81)
307 2kmc_A Fermitin family homolog 52.2 74 0.0025 24.1 8.7 71 229-299 20-98 (102)
308 3po0_A Small archaeal modifier 51.3 56 0.0019 23.8 7.2 59 163-226 18-87 (89)
309 1q1o_A Cell division control p 51.3 22 0.00075 27.0 4.7 39 75-113 4-49 (98)
310 1wgy_A RAP guanine nucleotide 50.5 28 0.00094 26.8 5.2 65 313-377 18-87 (104)
311 1tyg_B YJBS; alpha beta barrel 48.1 63 0.0022 23.8 6.8 65 151-225 19-84 (87)
312 1wgy_A RAP guanine nucleotide 47.4 47 0.0016 25.5 6.1 70 79-148 12-86 (104)
313 3onh_A Ubiquitin-activating en 47.4 42 0.0014 26.7 5.9 56 394-450 9-77 (127)
314 2cu3_A Unknown function protei 46.8 39 0.0013 23.1 5.2 57 312-376 4-60 (64)
315 2k5p_A THis protein, thiamine- 46.1 18 0.00061 26.2 3.4 59 312-375 5-64 (78)
316 3qa8_A MGC80376 protein; kinas 43.7 19 0.00065 37.7 4.5 52 312-363 319-371 (676)
317 2k9x_A Tburm1, uncharacterized 41.5 23 0.00078 27.6 3.6 76 228-305 4-103 (110)
318 2v1y_A Phosphatidylinositol-4, 41.1 96 0.0033 23.9 7.0 61 230-290 21-95 (108)
319 3dwg_C 9.5 kDa culture filtrat 39.0 1.1E+02 0.0038 22.3 7.9 60 166-227 20-92 (93)
320 1pqs_A Cell division control p 37.9 26 0.00088 25.4 3.1 26 316-341 3-28 (77)
321 2k9x_A Tburm1, uncharacterized 37.7 18 0.00062 28.2 2.5 75 380-456 4-102 (110)
322 1q1o_A Cell division control p 37.6 35 0.0012 25.9 3.9 38 380-417 5-49 (98)
323 2q5w_D Molybdopterin convertin 37.0 55 0.0019 23.0 5.0 55 239-299 16-72 (77)
324 2inc_C TOUB protein; DIIRON, 4 36.6 1.2E+02 0.0042 22.1 7.6 60 88-147 14-81 (83)
325 3h9d_A ATG8, microtubule-assoc 36.5 50 0.0017 26.1 4.9 58 394-451 51-112 (119)
326 3au4_A Myosin-X; protein-prote 36.3 62 0.0021 32.8 6.9 46 380-425 216-263 (555)
327 2c7h_A RBBP6, retinoblastoma-b 36.2 1.3E+02 0.0043 22.2 6.6 53 382-434 8-66 (86)
328 2l52_A Methanosarcina acetivor 35.5 68 0.0023 24.1 5.5 74 380-456 3-99 (99)
329 2zjd_A Microtubule-associated 35.5 98 0.0034 24.8 6.5 43 242-284 56-100 (130)
330 2hj1_A Hypothetical protein; s 35.0 1.1E+02 0.0036 23.1 6.3 69 380-453 12-86 (97)
331 1j0g_A Hypothetical protein 18 34.1 97 0.0033 22.4 5.5 64 393-456 26-90 (92)
332 2v1y_A Phosphatidylinositol-4, 34.1 58 0.002 25.2 4.8 32 306-337 21-52 (108)
333 3onh_A Ubiquitin-activating en 33.7 94 0.0032 24.7 6.0 52 172-224 19-79 (127)
334 1y8x_B Ubiquitin-activating en 33.0 68 0.0023 24.3 5.0 61 163-223 5-83 (98)
335 1f0z_A THis protein; ubiquitin 32.8 45 0.0015 22.9 3.7 59 84-149 5-63 (66)
336 1j0g_A Hypothetical protein 18 32.8 1.1E+02 0.0038 22.1 5.6 61 318-378 27-88 (92)
337 4gmv_A RAS-associated and plec 32.6 73 0.0025 29.2 6.1 67 383-449 34-111 (281)
338 1rws_A Hypothetical protein PF 32.6 21 0.00071 25.6 1.9 51 90-149 24-74 (77)
339 3u52_E Phenol hydroxylase comp 30.7 1.9E+02 0.0065 22.6 7.1 64 311-374 29-107 (119)
340 3r8s_T 50S ribosomal protein L 30.5 60 0.0021 24.3 4.2 39 390-428 27-66 (93)
341 1v8c_A MOAD related protein; r 30.0 1.1E+02 0.0036 25.7 6.2 61 394-456 17-87 (168)
342 3ge3_C Toluene-4-monooxygenase 29.6 1.6E+02 0.0056 21.4 6.5 60 88-147 16-82 (84)
343 2c7h_A RBBP6, retinoblastoma-b 29.6 68 0.0023 23.7 4.2 56 14-74 21-82 (86)
344 3m95_A Autophagy related prote 29.3 57 0.0019 26.0 4.1 58 394-451 56-117 (125)
345 3r8s_T 50S ribosomal protein L 28.9 58 0.002 24.4 3.9 40 313-352 26-66 (93)
346 1eo6_A GATE-16, golgi-associat 28.5 1.5E+02 0.005 23.2 6.4 44 242-285 48-92 (117)
347 2g1e_A Hypothetical protein TA 28.4 1.7E+02 0.0056 21.1 6.7 56 243-299 19-85 (90)
348 1c1y_B Proto-onkogene serine/t 28.1 1.3E+02 0.0046 21.6 5.4 57 383-439 4-67 (77)
349 1vq8_S 50S ribosomal protein L 27.6 53 0.0018 24.2 3.4 33 313-345 21-53 (85)
350 2eel_A Cell death activator CI 27.4 95 0.0032 23.2 4.7 49 401-452 28-78 (91)
351 2r2q_A Gamma-aminobutyric acid 27.2 66 0.0022 24.9 4.1 45 395-439 48-93 (110)
352 1rax_A Protein (RA-domain of R 26.8 1.5E+02 0.005 23.1 5.8 70 2-74 32-112 (115)
353 3hk0_A Growth factor receptor- 26.5 87 0.003 28.3 5.4 55 382-436 10-71 (256)
354 3hvz_A Uncharacterized protein 26.3 90 0.0031 22.4 4.4 60 2-70 7-66 (78)
355 1vq8_S 50S ribosomal protein L 26.2 63 0.0022 23.8 3.6 34 390-423 22-55 (85)
356 3rui_B Autophagy-related prote 26.1 1.9E+02 0.0065 22.6 6.6 43 242-284 50-93 (118)
357 2zjd_A Microtubule-associated 25.4 75 0.0026 25.5 4.2 59 393-451 55-118 (130)
358 2lgx_A Fermitin family homolog 25.3 52 0.0018 25.3 3.0 68 230-298 28-100 (112)
359 3rui_B Autophagy-related prote 25.2 85 0.0029 24.7 4.4 58 394-451 50-111 (118)
360 3lxf_A Ferredoxin; iron, iron- 23.8 96 0.0033 23.4 4.5 28 2-29 2-29 (104)
361 1eo6_A GATE-16, golgi-associat 23.3 82 0.0028 24.7 4.0 59 394-452 48-110 (117)
362 3pvl_A Myosin VIIA isoform 1; 23.3 93 0.0032 32.3 5.6 47 379-425 262-309 (655)
363 3j21_T 50S ribosomal protein L 23.0 80 0.0027 23.3 3.6 33 313-345 22-54 (86)
364 2zjr_Q 50S ribosomal protein L 23.0 84 0.0029 23.6 3.8 33 389-422 22-54 (95)
365 1c1y_B Proto-onkogene serine/t 22.9 1.5E+02 0.0052 21.3 4.9 42 3-45 4-45 (77)
366 1f2r_I Inhibitor of caspase-ac 22.6 2.5E+02 0.0087 21.2 7.3 67 229-300 19-89 (100)
367 2zjr_Q 50S ribosomal protein L 22.6 60 0.0021 24.5 2.9 38 313-351 22-60 (95)
368 3tve_T 50S ribosomal protein L 22.5 91 0.0031 23.3 3.9 33 390-422 21-53 (92)
369 2dhz_A RAP guanine nucleotide 22.3 82 0.0028 24.8 3.7 61 316-376 21-92 (120)
370 3tve_T 50S ribosomal protein L 22.3 76 0.0026 23.7 3.4 39 314-352 21-60 (92)
371 1pqs_A Cell division control p 22.1 84 0.0029 22.6 3.5 26 12-37 3-28 (77)
372 3tca_A Amyloid beta A4 precurs 22.0 1.4E+02 0.0049 26.8 6.2 43 3-45 37-79 (291)
373 3j21_T 50S ribosomal protein L 21.8 94 0.0032 22.9 3.8 34 390-423 23-56 (86)
374 1f2r_I Inhibitor of caspase-ac 21.7 1E+02 0.0035 23.4 4.0 49 400-451 36-88 (100)
375 3tca_A Amyloid beta A4 precurs 21.7 1.6E+02 0.0055 26.4 6.5 42 381-422 35-76 (291)
376 2dhz_A RAP guanine nucleotide 20.9 1.2E+02 0.0042 23.8 4.5 71 77-147 10-91 (120)
377 2j58_A WZA, outer membrane lip 20.8 5.3E+02 0.018 24.2 10.9 105 323-451 117-231 (359)
No 1
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=100.00 E-value=1.3e-35 Score=260.50 Aligned_cols=153 Identities=34% Similarity=0.497 Sum_probs=147.4
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEe-e-ccEEccCCCcccccccccccceeEEEE-ecCce
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLR-LRGGM 77 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~-~-~g~~L~~~~tl~~y~i~~~sti~l~~~-~~~~~ 77 (457)
|+|+|++++|++++++|++++||.++|++|+++.|+|+++|+|+ | +|+.|+|+.+|++|+|.+++++|++.+ ++++|
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~m 82 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEPL 82 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCCE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCcE
Confidence 89999999999999999999999999999999999999999999 9 799999999999999999999999999 58999
Q ss_pred EEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEecCcccCCCCcccccccccCCcceEEEEeecce
Q 012759 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (457)
Q Consensus 78 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~~~~ 153 (457)
+|+|++.+|+.+.++|++++||+++|++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++||+.++++||-
T Consensus 83 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG~ 158 (159)
T 3rt3_B 83 SILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG 158 (159)
T ss_dssp EEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC---
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988763
No 2
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=100.00 E-value=6.6e-35 Score=255.92 Aligned_cols=153 Identities=34% Similarity=0.493 Sum_probs=147.0
Q ss_pred eeeEEEeeCCcEEEEEeecCccHHHHHHHhhhhcCCCCCCceEE-e-cCeeccCCCcccccccccCceEEEEEE-ecCce
Q 012759 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLR-LRGGM 381 (457)
Q Consensus 305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~-~-~g~~L~d~~~l~~~~i~~~~~l~l~~~-~~~~~ 381 (457)
|+|+|++++|+++++++++++||.+||++|++++|+|+++|+|. | +|+.|+|+.+|++|++.+++++++..+ .+++|
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~m 82 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEPL 82 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCCE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCcE
Confidence 78999999999999999999999999999999999999999999 9 799999999999999999999999998 48899
Q ss_pred eeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 012759 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 382 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG~ 457 (457)
+|+|++.+|+++.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|++.+|++||.
T Consensus 83 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG~ 158 (159)
T 3rt3_B 83 SILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG 158 (159)
T ss_dssp EEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC---
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999994
No 3
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=100.00 E-value=6.1e-35 Score=259.29 Aligned_cols=152 Identities=96% Similarity=1.322 Sum_probs=145.7
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCceEEE
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~~~i~ 80 (457)
|+|||++++|++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++++.+++|+++
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~~i~ 100 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 100 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccccce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEecCcccCCCCcccccccccCCcceEEEEeecc
Q 012759 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (457)
Q Consensus 81 vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~~~ 152 (457)
|++.+|+++.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|+|+++++|||.++++||
T Consensus 101 Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 101 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp EEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred eecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998775
No 4
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=100.00 E-value=3e-34 Score=254.81 Aligned_cols=155 Identities=94% Similarity=1.292 Sum_probs=146.5
Q ss_pred cCceeeEEEeeCCcEEEEEeecCccHHHHHHHhhhhcCCCCCCceEEecCeeccCCCcccccccccCceEEEEEEecCce
Q 012759 302 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 381 (457)
Q Consensus 302 ~~~~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~l~l~~~~~~~~ 381 (457)
...|+|+|++++|+++++++++++||.+||++|++++|+|+++|+|.|+|+.|+|+.+|++|+|.++++++|..+..+.|
T Consensus 18 ~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~ 97 (172)
T 3u30_A 18 GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 97 (172)
T ss_dssp -CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCE
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 382 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
+|+|+..+|+++.++|++++||.+||.+|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|.+|+|||
T Consensus 98 ~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 98 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp EEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred cceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998
No 5
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=100.00 E-value=6.4e-33 Score=241.53 Aligned_cols=152 Identities=96% Similarity=1.322 Sum_probs=148.6
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCceEEE
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~~~i~ 80 (457)
|+|+|++.+|++++++|++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++.+..++|+|+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~ 80 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 80 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccccccee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEecCcccCCCCcccccccccCCcceEEEEeecc
Q 012759 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (457)
Q Consensus 81 vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~~~ 152 (457)
|++.+|+.+.+++++++||.++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++.++++||
T Consensus 81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999988775
No 6
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=100.00 E-value=2.1e-32 Score=238.27 Aligned_cols=152 Identities=96% Similarity=1.322 Sum_probs=148.2
Q ss_pred eeeEEEeeCCcEEEEEeecCccHHHHHHHhhhhcCCCCCCceEEecCeeccCCCcccccccccCceEEEEEEecCceeeE
Q 012759 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 384 (457)
Q Consensus 305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~l~l~~~~~~~~~i~ 384 (457)
|+|+|+.++|+++++++++++||++||++|++++|+|+++|+|.|+|..|+|+.+|++|++.+++++++..+.+..|+|+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~ 80 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 80 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccccccee
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999888899999
Q ss_pred EEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 385 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 385 v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
|++.+|+++.+++++++||++||.+|++++|+|++.|+|+|+|+.|+|+.+|++|||++|++|++.+|++||
T Consensus 81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998
No 7
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.80 E-value=1.8e-19 Score=138.14 Aligned_cols=77 Identities=35% Similarity=0.569 Sum_probs=75.5
Q ss_pred CceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCC
Q 012759 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 455 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~G 455 (457)
++|+|+|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++|++|
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999998
No 8
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.79 E-value=1.4e-19 Score=139.15 Aligned_cols=70 Identities=23% Similarity=0.433 Sum_probs=68.7
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEE
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~ 70 (457)
|||||+++.|+++++++.|+|||.+||++|++++|+|+++|+|+|+|++|+|+.||++|+|.+++|+||.
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 7999999999999999999999999999999999999999999999999999999999999999999985
No 9
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.79 E-value=2.1e-19 Score=140.44 Aligned_cols=77 Identities=56% Similarity=0.917 Sum_probs=73.1
Q ss_pred eeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 012759 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG~ 457 (457)
|+|+|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++.+|++||.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999994
No 10
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.79 E-value=3.1e-19 Score=137.28 Aligned_cols=79 Identities=24% Similarity=0.386 Sum_probs=71.2
Q ss_pred EEEEecCceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEE
Q 012759 373 LVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 373 l~~~~~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~ 451 (457)
|++..++.|+|||++..|+++.++|.|++||.+||++|++++|+|+++|+|.|+|+.|+|+.||++|+|++|++|+|..
T Consensus 14 ~~~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 14 LVPRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp ------CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred ccCCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 4555678899999999999999999999999999999999999999999999999999999999999999999999863
No 11
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.78 E-value=8.3e-19 Score=133.25 Aligned_cols=76 Identities=57% Similarity=0.952 Sum_probs=72.9
Q ss_pred eeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
|+|+|+..+|+++.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++.+|++||
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998
No 12
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.77 E-value=5.2e-19 Score=135.48 Aligned_cols=77 Identities=18% Similarity=0.425 Sum_probs=74.8
Q ss_pred ceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
.|+|+|++.+|+++.++|++++||++||++|+++.|+|+++|+|+|+|+.|+|+.||++|||++|++|++.+|++||
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999998
No 13
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.77 E-value=6.5e-19 Score=137.92 Aligned_cols=79 Identities=57% Similarity=0.963 Sum_probs=76.9
Q ss_pred cCceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
..+|+|+|++.+|+++.++|++++||.+||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||+++++|++.+|++||
T Consensus 10 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 88 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG 88 (88)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred CCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999999999998
No 14
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.1e-18 Score=139.19 Aligned_cols=79 Identities=94% Similarity=1.267 Sum_probs=76.0
Q ss_pred cCceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
...|+|+|+..+|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|++.+|++||
T Consensus 20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 4579999999999999999999999999999999999999999999999999999999999999999999999999998
No 15
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.76 E-value=1.2e-18 Score=133.48 Aligned_cols=75 Identities=36% Similarity=0.595 Sum_probs=72.9
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecC
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~ 75 (457)
|+|||++++|++++++|++++||.++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++++++|
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999998764
No 16
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.76 E-value=1.1e-18 Score=138.89 Aligned_cols=79 Identities=18% Similarity=0.407 Sum_probs=76.9
Q ss_pred cCceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
+..|+|+|++.+|+++.++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|++|++.+|++||
T Consensus 19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence 4569999999999999999999999999999999999999999999999999999999999999999999999999998
No 17
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.76 E-value=2.4e-18 Score=130.69 Aligned_cols=76 Identities=95% Similarity=1.320 Sum_probs=74.7
Q ss_pred eeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
|+|+|+..+|+++.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++.+|++||
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998
No 18
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.76 E-value=1.7e-18 Score=135.43 Aligned_cols=88 Identities=28% Similarity=0.519 Sum_probs=72.2
Q ss_pred ccccCceEEEEEEecCceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCC
Q 012759 364 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 443 (457)
Q Consensus 364 ~i~~~~~l~l~~~~~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~ 443 (457)
|..+++++++..+.+..|+|+|+..+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++||| +
T Consensus 1 g~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~ 79 (88)
T 4eew_A 1 GMEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-G 79 (88)
T ss_dssp --------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-T
T ss_pred CCCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-C
Confidence 345678888888888899999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred CCEEEEEEe
Q 012759 444 ESTLHLVLR 452 (457)
Q Consensus 444 ~~~i~l~~r 452 (457)
|++|+++.|
T Consensus 80 g~~i~lv~R 88 (88)
T 4eew_A 80 GKVIHLVER 88 (88)
T ss_dssp TEEEEEEEC
T ss_pred CcEEEEEEC
Confidence 999999986
No 19
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=2.1e-18 Score=134.70 Aligned_cols=80 Identities=34% Similarity=0.518 Sum_probs=77.3
Q ss_pred cCceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 012759 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG~ 457 (457)
+..|+|+|+..+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|+++++|++.+|++||.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~ 84 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGP 84 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCCS
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999994
No 20
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=1.5e-18 Score=134.87 Aligned_cols=79 Identities=77% Similarity=1.096 Sum_probs=73.2
Q ss_pred CceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 012759 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG~ 457 (457)
.+|+|+|+..+|+++.++|++++||++||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|+++++|++.+|++||.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 80 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGG 80 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC---
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 3689999999999999999999999999999999999999999999999999999999999999999999999999983
No 21
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=1.6e-18 Score=135.47 Aligned_cols=79 Identities=85% Similarity=1.225 Sum_probs=70.4
Q ss_pred CceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 012759 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG~ 457 (457)
..|+|++++.+|+++.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++.+|++||.
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG~ 86 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 86 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC------
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCC
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999999999993
No 22
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.2e-19 Score=148.72 Aligned_cols=103 Identities=74% Similarity=0.991 Sum_probs=97.5
Q ss_pred CceEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEecCcccCCCCcccccccccCCcceEEEEeeccee
Q 012759 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ 154 (457)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~~~~~ 154 (457)
+..+|+|++++|+.+.++|++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|.++++|++.
T Consensus 8 ~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~~ 87 (114)
T 2kdi_A 8 GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGSM 87 (114)
T ss_dssp CCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSCC
T ss_pred CcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCce
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEe---eccCceEEEeecCCChHHH
Q 012759 155 IFVK---TLTGKTITLEVESSDTIDN 177 (457)
Q Consensus 155 i~vk---~~~g~~~~~~v~~~~tV~~ 177 (457)
++++ ...|++++++|.+++||.+
T Consensus 88 ~~~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 88 GGAADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp CSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred eeccccccccCceEEEEeccccccCC
Confidence 9998 5578999999999998863
No 23
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=3.5e-18 Score=132.81 Aligned_cols=78 Identities=90% Similarity=1.218 Sum_probs=75.8
Q ss_pred CceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
.+|+|+|++.+|+++.++|++++||.+||++|++.+++|++.|+|+|+|+.|+|+.+|++|+|+++++|++.+|++||
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence 369999999999999999999999999999999999999999999999999999999999999999999999999998
No 24
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.75 E-value=3.3e-18 Score=136.16 Aligned_cols=78 Identities=94% Similarity=1.262 Sum_probs=74.1
Q ss_pred ceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 012759 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG~ 457 (457)
.|+|+|++.+|+++.++|++++||.+||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++.+|++||+
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999999994
No 25
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.75 E-value=1.7e-18 Score=136.19 Aligned_cols=70 Identities=23% Similarity=0.328 Sum_probs=68.7
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEE
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~ 70 (457)
|+|||+++.|++++++|.++|||.+||++|++++|+|+++|+|+|+|+.|+|+.||++|+|.+++++||+
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 7999999999999999999999999999999999999999999999999999999999999999999985
No 26
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.75 E-value=2.7e-18 Score=134.14 Aligned_cols=77 Identities=56% Similarity=0.924 Sum_probs=73.1
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCce
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 77 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~~ 77 (457)
|+|+|++++|++++++|++++||.++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++++++++.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999988875
No 27
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.75 E-value=2.6e-18 Score=135.60 Aligned_cols=77 Identities=38% Similarity=0.647 Sum_probs=72.8
Q ss_pred cCceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
...|+|+|+. |+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++|++||
T Consensus 17 ~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 17 RGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp ---CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred CCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 4579999998 8999999999999999999999999999999999999999999999999999999999999999998
No 28
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.74 E-value=4.7e-18 Score=134.19 Aligned_cols=79 Identities=27% Similarity=0.411 Sum_probs=75.8
Q ss_pred cCceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCC-CcccccCCCCCCEEEEEEecCCC
Q 012759 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~-~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
..+|+|+|++..| ++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+ .+|++|||++|++|+|++|++||
T Consensus 13 ~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg 91 (94)
T 2kan_A 13 VRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR 91 (94)
T ss_dssp SCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred CCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence 4679999999888 899999999999999999999999999999999999999999 99999999999999999999998
Q ss_pred C
Q 012759 457 F 457 (457)
Q Consensus 457 ~ 457 (457)
.
T Consensus 92 ~ 92 (94)
T 2kan_A 92 A 92 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 29
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=5.8e-20 Score=150.54 Aligned_cols=100 Identities=75% Similarity=1.000 Sum_probs=94.1
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCceEEE
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~~~i~ 80 (457)
.+|+|++++|++++++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++.+++++++++
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~~~~ 89 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGSMGG 89 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSCCCS
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCceee
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred EE---ccCCcEEEEEEcCCCCHH
Q 012759 81 VK---TLTGKTITLEVESSDTID 100 (457)
Q Consensus 81 vk---~~~g~~~~l~v~~~~tV~ 100 (457)
++ +.+|++++++|.+++||+
T Consensus 90 ~~~~~~~~g~~~~~~v~~~~~~~ 112 (114)
T 2kdi_A 90 AADEEELIRKAIELSLKESRNSG 112 (114)
T ss_dssp SCSSSHHHHHHHHSSSHHHHHGG
T ss_pred ccccccccCceEEEEeccccccC
Confidence 88 567888888888887765
No 30
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=2e-18 Score=133.51 Aligned_cols=74 Identities=22% Similarity=0.425 Sum_probs=70.4
Q ss_pred CeEEEEcCCCcEEEEEec--CCCcHHHHHHHH-hhhcCCCCccceEeeccEEccCCCccccccc-ccccceeEEEEec
Q 012759 1 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRLR 74 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~--~~dtv~~ik~ki-~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i-~~~sti~l~~~~~ 74 (457)
|+|||++++|++++++|+ ++|||.++|++| ++++|+|+++|+|+|+|++|+|+.+|++|+| .+++++++..++.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~ 79 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPN 79 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCC
Confidence 899999999999999866 999999999999 9999999999999999999999999999999 7999999988753
No 31
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.74 E-value=2.9e-18 Score=133.98 Aligned_cols=78 Identities=36% Similarity=0.590 Sum_probs=72.3
Q ss_pred CceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
.+|+|+|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++..+++||
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg 80 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 80 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC----
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCC
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999999998
No 32
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.74 E-value=7.2e-18 Score=137.50 Aligned_cols=78 Identities=94% Similarity=1.272 Sum_probs=75.3
Q ss_pred CceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
..|+|+|+..+|+++.++|++++||.+||.+|++++|+|++.|+|+|+|+.|+|+.+|++|||++|++|++++|++||
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999999998
No 33
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=9.4e-18 Score=131.55 Aligned_cols=79 Identities=37% Similarity=0.617 Sum_probs=76.0
Q ss_pred CceeeEEEcCCC-CEEEE-EecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 379 GGMQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 379 ~~~~i~v~~~~g-~~~~l-~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
.+|+|+|+..+| +++.+ +|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|++.+|++||
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG 85 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSG 85 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCS
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCC
Confidence 579999999999 69999 5999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 012759 457 F 457 (457)
Q Consensus 457 ~ 457 (457)
.
T Consensus 86 ~ 86 (89)
T 1wy8_A 86 P 86 (89)
T ss_dssp S
T ss_pred C
Confidence 4
No 34
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.74 E-value=6e-18 Score=135.13 Aligned_cols=91 Identities=81% Similarity=1.094 Sum_probs=75.1
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCceEEE
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~~~i~ 80 (457)
|+|+|++++|++++++|.+++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.++++++++.+.+++.+++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~ 80 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPN 80 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC----
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcEEEE
Q 012759 81 VKTLTGKTITL 91 (457)
Q Consensus 81 vk~~~g~~~~l 91 (457)
.++.+|+.-.+
T Consensus 81 ~~~v~~~~~~~ 91 (98)
T 1yx5_B 81 SSSVDKLAAAL 91 (98)
T ss_dssp -----------
T ss_pred cccCCCchhhh
Confidence 99998776544
No 35
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.73 E-value=4.5e-18 Score=131.32 Aligned_cols=73 Identities=33% Similarity=0.473 Sum_probs=70.9
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEE-ccCCCcccccccccccceeEEEEe
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~-L~~~~tl~~y~i~~~sti~l~~~~ 73 (457)
|+|||++++|++++++|++++||.++|++|+++.|+|+++|+|+|+|+. |+|+++|++|+|.+++++++++++
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999 999999999999999999998764
No 36
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.73 E-value=7.7e-18 Score=137.47 Aligned_cols=78 Identities=94% Similarity=1.272 Sum_probs=75.3
Q ss_pred CceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
..|+|+|+..+|+.+.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|+|.+|++||
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999999998
No 37
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.73 E-value=6.3e-18 Score=132.23 Aligned_cols=87 Identities=29% Similarity=0.523 Sum_probs=71.8
Q ss_pred cccccceeEEEEecCceEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEecCcccCCCCcccccccccC
Q 012759 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 140 (457)
Q Consensus 61 i~~~sti~l~~~~~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~ 140 (457)
...++++++..+....|+|+||+.+|+.+.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+| +|
T Consensus 2 ~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g 80 (88)
T 4eew_A 2 MEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GG 80 (88)
T ss_dssp -------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TT
T ss_pred CCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CC
Confidence 34678889988888899999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred CcceEEEE
Q 012759 141 STLHLVLR 148 (457)
Q Consensus 141 s~i~l~~~ 148 (457)
++|||++|
T Consensus 81 ~~i~lv~R 88 (88)
T 4eew_A 81 KVIHLVER 88 (88)
T ss_dssp EEEEEEEC
T ss_pred cEEEEEEC
Confidence 99999864
No 38
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.73 E-value=1.4e-17 Score=131.11 Aligned_cols=77 Identities=91% Similarity=1.263 Sum_probs=74.6
Q ss_pred cCceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecC
Q 012759 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 454 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~ 454 (457)
...|+|+|++.+|+++.++|++++||.+||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++.+|+|
T Consensus 15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999986
No 39
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.72 E-value=7.5e-18 Score=135.52 Aligned_cols=75 Identities=29% Similarity=0.437 Sum_probs=71.9
Q ss_pred CeEEEEcCCCc-EEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCccccccccc-------ccceeEEEE
Q 012759 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR 72 (457)
Q Consensus 1 ~~i~~~~~~g~-~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~-------~sti~l~~~ 72 (457)
|+||++...++ +++++|+++|||.+||++|++++|+|+++|+|+|+|++|+|++||++|+|.+ ++|+||+++
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 89999999887 8899999999999999999999999999999999999999999999999999 999999998
Q ss_pred ecC
Q 012759 73 LRG 75 (457)
Q Consensus 73 ~~~ 75 (457)
..+
T Consensus 81 ~~~ 83 (118)
T 4ajy_B 81 ADD 83 (118)
T ss_dssp CSS
T ss_pred cCC
Confidence 643
No 40
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.72 E-value=7.5e-18 Score=128.97 Aligned_cols=76 Identities=18% Similarity=0.448 Sum_probs=73.0
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|++++|++++++|++++||.++|++|+++.|+|+++|+|+|+|+.|+|+.|+++|+|.+++++|++++.+++
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999987653
No 41
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.72 E-value=2e-17 Score=129.91 Aligned_cols=78 Identities=32% Similarity=0.549 Sum_probs=74.4
Q ss_pred cCceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
+..|+|+|++.+|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++||| +|++|+|++|++++
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence 3579999999999999999999999999999999999999999999999999999999999999 89999999998876
No 42
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.72 E-value=7.2e-18 Score=136.37 Aligned_cols=72 Identities=29% Similarity=0.451 Sum_probs=69.5
Q ss_pred CeEEEEcCCCc-EEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccc-------cccceeEEEE
Q 012759 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR 72 (457)
Q Consensus 1 ~~i~~~~~~g~-~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~-------~~sti~l~~~ 72 (457)
|+||++...|+ +++++|+++|||.+||++|++++|||+++|+|+|+|++|+|++||++|+|. ++||+||+++
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 89999999886 699999999999999999999999999999999999999999999999999 7999999988
No 43
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.71 E-value=3.4e-17 Score=130.74 Aligned_cols=77 Identities=95% Similarity=1.291 Sum_probs=74.6
Q ss_pred eeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 012759 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG~ 457 (457)
|+|+|+..+|+++.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++..|++||.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~ 77 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGR 77 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999983
No 44
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.71 E-value=1.2e-17 Score=132.78 Aligned_cols=76 Identities=18% Similarity=0.448 Sum_probs=73.5
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|++++|++++++|.+++||.+||++|+++.|+|+++|+|+|+|++|+|++||++|+|.+++++|++++.+++
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999987764
No 45
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.70 E-value=1.9e-17 Score=130.12 Aligned_cols=73 Identities=22% Similarity=0.294 Sum_probs=70.2
Q ss_pred CceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEE
Q 012759 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~ 451 (457)
++|+|+|++..|+++.++|.|++||.+||++|++++|+|+++|||+|+|++|+|+.||++|||+++++|+|..
T Consensus 27 ~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 27 TMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp CEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 4599999999999999999999999999999999999999999999999999999999999999999999874
No 46
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.70 E-value=4.3e-17 Score=142.89 Aligned_cols=77 Identities=96% Similarity=1.293 Sum_probs=74.2
Q ss_pred eeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 012759 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG~ 457 (457)
|+|+|++.+|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|++.+|++||.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~ 77 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC--
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999994
No 47
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=5.2e-17 Score=123.93 Aligned_cols=75 Identities=36% Similarity=0.657 Sum_probs=71.4
Q ss_pred CceeeEEEcCCCCEE-EEE-ecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEec
Q 012759 379 GGMQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 453 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~-~l~-v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~ 453 (457)
+.|+|+|++.+|+++ .++ |++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++.+|+
T Consensus 1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 369999999999985 999 999999999999999999999999999999999999999999999999999999986
No 48
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.70 E-value=4.2e-17 Score=123.72 Aligned_cols=76 Identities=57% Similarity=0.952 Sum_probs=72.4
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|++++|++++++|++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++.+++
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999887653
No 49
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.70 E-value=3.2e-17 Score=126.52 Aligned_cols=73 Identities=33% Similarity=0.476 Sum_probs=71.2
Q ss_pred ceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeE-cCCCCcccccCCCCCCEEEEEEe
Q 012759 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~-L~d~~tL~~~~I~~~~~i~l~~r 452 (457)
-|+|++++..|+++.++|++++||++||++|++.+|+|+++|+|+|+|+. |+|+.+|++|||++|++|++.+|
T Consensus 10 ~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 10 HMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp CEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred ceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 59999999999999999999999999999999999999999999999999 99999999999999999999886
No 50
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.70 E-value=3e-17 Score=128.89 Aligned_cols=74 Identities=34% Similarity=0.585 Sum_probs=71.5
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecC
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~ 75 (457)
|+|||++++|++++++|.+++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+| +++++|++++.+.
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~ 79 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPP 79 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999 8999999998654
No 51
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.70 E-value=2.9e-17 Score=128.50 Aligned_cols=76 Identities=58% Similarity=0.975 Sum_probs=73.5
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|++++|++++++|.+++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 88 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG 88 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999987764
No 52
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.69 E-value=2.7e-17 Score=133.04 Aligned_cols=75 Identities=28% Similarity=0.431 Sum_probs=68.3
Q ss_pred eeeEEEcCCCC-EEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCC-------CCCEEEEEEe
Q 012759 381 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR 452 (457)
Q Consensus 381 ~~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~-------~~~~i~l~~r 452 (457)
|++|++...++ ++.++|.+++||++||++|++++|||+++|||+|+|+.|+|++||++|||+ .++||+|++|
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 55666665565 589999999999999999999999999999999999999999999999999 7999999999
Q ss_pred cCCC
Q 012759 453 LRGG 456 (457)
Q Consensus 453 ~~GG 456 (457)
.||
T Consensus 81 -~~g 83 (118)
T 2fnj_B 81 -ADD 83 (118)
T ss_dssp -SSS
T ss_pred -CCC
Confidence 666
No 53
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.69 E-value=3.3e-17 Score=133.77 Aligned_cols=79 Identities=33% Similarity=0.468 Sum_probs=76.3
Q ss_pred cCceeeEEEcC---CCCEEEEEecC-CchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEec
Q 012759 378 RGGMQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 453 (457)
Q Consensus 378 ~~~~~i~v~~~---~g~~~~l~v~~-~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~ 453 (457)
+.+|+|+|++. +|+.+.++|++ ++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+|.+|+
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 46799999998 88999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 012759 454 RGG 456 (457)
Q Consensus 454 ~GG 456 (457)
+||
T Consensus 105 ~GG 107 (111)
T 1we6_A 105 RSG 107 (111)
T ss_dssp CCS
T ss_pred CCC
Confidence 999
No 54
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=3.7e-17 Score=124.78 Aligned_cols=73 Identities=36% Similarity=0.643 Sum_probs=70.6
Q ss_pred CeEEEEcCCCcEE-EEE-ecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEe
Q 012759 1 MQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g~~~-~~~-v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~ 73 (457)
|+|+|++.+|+++ +++ |++++||.++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|+++++
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 8999999999985 999 999999999999999999999999999999999999999999999999999999875
No 55
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.69 E-value=3.8e-17 Score=133.74 Aligned_cols=76 Identities=26% Similarity=0.458 Sum_probs=70.8
Q ss_pred CeEEEEcCCCcEE-EEEecCCCcHHHHHHHH-----hhhcCCCC--ccceEeeccEEccCCCcccccccccc------cc
Q 012759 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKE------ST 66 (457)
Q Consensus 1 ~~i~~~~~~g~~~-~~~v~~~dtv~~ik~ki-----~~~~gip~--~~q~l~~~g~~L~~~~tl~~y~i~~~------st 66 (457)
|+|+|++++|+.+ +++++++|||.+||++| ++++|+|+ ++|+|+|+|++|+|++||++|+|..+ ++
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t 96 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT 96 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence 7899999999988 79999999999999999 77889997 79999999999999999999999988 78
Q ss_pred eeEEEEecCc
Q 012759 67 LHLVLRLRGG 76 (457)
Q Consensus 67 i~l~~~~~~~ 76 (457)
+||+++++++
T Consensus 97 mhlVlrl~g~ 106 (126)
T 1se9_A 97 MHVIIQAPVT 106 (126)
T ss_dssp EEEEECCCSS
T ss_pred EEEEeccCCc
Confidence 9999988764
No 56
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=4.7e-17 Score=127.03 Aligned_cols=76 Identities=87% Similarity=1.271 Sum_probs=70.2
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|++++|++++++|++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.++++++++++++++
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG 85 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 85 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-----
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999887764
No 57
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.69 E-value=4.2e-17 Score=128.30 Aligned_cols=74 Identities=92% Similarity=1.261 Sum_probs=71.8
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEec
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~ 74 (457)
|+|+|++.+|++++++|.+++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998754
No 58
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=4.8e-17 Score=128.46 Aligned_cols=78 Identities=29% Similarity=0.500 Sum_probs=73.9
Q ss_pred CceeeEEEcCCCC--EEEEEecCCchHHHHHHHHhhhc--CCCCCCeEEEECCeEcCCCCccccc--CCCCCCEEEEEEe
Q 012759 379 GGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLR 452 (457)
Q Consensus 379 ~~~~i~v~~~~g~--~~~l~v~~~~tV~~lK~~i~~~~--gip~~~q~l~~~g~~L~d~~tL~~~--~I~~~~~i~l~~r 452 (457)
.+|+|+|+..+|+ .+.++|++++||.+||++|++.+ |+|+++|+|+|+|+.|+|+.+|++| +|+++++|+|++|
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~ 85 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCN 85 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECC
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeC
Confidence 4689999999888 67777889999999999999999 9999999999999999999999999 9999999999999
Q ss_pred cCCC
Q 012759 453 LRGG 456 (457)
Q Consensus 453 ~~GG 456 (457)
++||
T Consensus 86 ~~gg 89 (93)
T 1wgd_A 86 VKSG 89 (93)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9998
No 59
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.52 E-value=1.8e-18 Score=131.45 Aligned_cols=75 Identities=33% Similarity=0.588 Sum_probs=73.5
Q ss_pred eeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCC
Q 012759 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 455 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~G 455 (457)
|+|+|++.+|+++.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++.+|++|
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999998
No 60
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=5.2e-17 Score=129.51 Aligned_cols=76 Identities=97% Similarity=1.333 Sum_probs=73.7
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|++++|++++++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999988764
No 61
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.69 E-value=2.8e-17 Score=128.37 Aligned_cols=76 Identities=37% Similarity=0.616 Sum_probs=70.7
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|++++|++++++|++++||.++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++.+.+++
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg 80 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 80 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC----
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999887654
No 62
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.68 E-value=7.6e-17 Score=142.60 Aligned_cols=81 Identities=90% Similarity=1.184 Sum_probs=78.0
Q ss_pred ecCceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 377 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 377 ~~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
....|+|+|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+|++|++||
T Consensus 102 d~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG 181 (189)
T 3q3f_A 102 DHYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 181 (189)
T ss_dssp CCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCC
T ss_pred cccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCC
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 012759 457 F 457 (457)
Q Consensus 457 ~ 457 (457)
.
T Consensus 182 ~ 182 (189)
T 3q3f_A 182 G 182 (189)
T ss_dssp C
T ss_pred C
Confidence 3
No 63
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.68 E-value=9.5e-17 Score=127.66 Aligned_cols=79 Identities=91% Similarity=1.240 Sum_probs=74.0
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCceEE
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 79 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~~~i 79 (457)
|+|+|++++|++++++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++...
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~~~ 80 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYADL 80 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC----
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCCcc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999888654
No 64
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.68 E-value=8.4e-17 Score=129.41 Aligned_cols=77 Identities=30% Similarity=0.452 Sum_probs=70.5
Q ss_pred eeeEEEcCCCC-EEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCC-------CCEEEEEEe
Q 012759 381 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR 452 (457)
Q Consensus 381 ~~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~-------~~~i~l~~r 452 (457)
|.+|++...++ ++.++|.+++||.+||++|+.++|+|+++|||+|+|+.|+|++||++|||++ +++|+|++|
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 56788776666 7888999999999999999999999999999999999999999999999999 999999999
Q ss_pred cCCCC
Q 012759 453 LRGGF 457 (457)
Q Consensus 453 ~~GG~ 457 (457)
..|+|
T Consensus 81 ~~~~f 85 (118)
T 4ajy_B 81 ADDTF 85 (118)
T ss_dssp CSSCC
T ss_pred cCCCc
Confidence 85543
No 65
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=7.5e-17 Score=125.20 Aligned_cols=76 Identities=80% Similarity=1.167 Sum_probs=72.6
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|++++|++++++|.+++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 79 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGG 79 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999988764
No 66
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=8e-17 Score=130.77 Aligned_cols=74 Identities=24% Similarity=0.419 Sum_probs=68.5
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhh------hcCC--CCccceEeeccEEccCCCcccccccccc--cceeEE
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--STLHLV 70 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~------~~gi--p~~~q~l~~~g~~L~~~~tl~~y~i~~~--sti~l~ 70 (457)
|+|+|++++|++++++|++++||.+||++|++ ++|+ |+++|+|+|+|++|+|++||++|+|..+ +++||+
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLv 96 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 96 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 78999999999999999999999999999999 7786 6999999999999999999999999755 789999
Q ss_pred EEec
Q 012759 71 LRLR 74 (457)
Q Consensus 71 ~~~~ 74 (457)
+++.
T Consensus 97 lr~~ 100 (116)
T 1wgh_A 97 ARET 100 (116)
T ss_dssp ECSS
T ss_pred ccCC
Confidence 8765
No 67
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=122.51 Aligned_cols=77 Identities=39% Similarity=0.674 Sum_probs=73.6
Q ss_pred cCceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecC
Q 012759 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 454 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~ 454 (457)
..+|+|+|+..+|+.+.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++.+|++
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 81 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKPL 81 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999874
No 68
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.67 E-value=7.9e-17 Score=127.12 Aligned_cols=75 Identities=28% Similarity=0.461 Sum_probs=72.0
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCC-CcccccccccccceeEEEEecCc
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~-~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|||++++| +++++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+ .+|++|+|.++++++++++++++
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg 91 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR 91 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence 7899999988 999999999999999999999999999999999999999999 99999999999999999988764
No 69
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.67 E-value=1.5e-16 Score=120.72 Aligned_cols=76 Identities=95% Similarity=1.320 Sum_probs=73.5
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|++++|++++++|++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987764
No 70
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=9.6e-17 Score=125.18 Aligned_cols=76 Identities=34% Similarity=0.532 Sum_probs=73.7
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|++++|++++++|++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG 83 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSG 83 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999988765
No 71
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=6.3e-17 Score=125.08 Aligned_cols=74 Identities=22% Similarity=0.408 Sum_probs=69.5
Q ss_pred ceeeEEEcCCCCEEEEEec--CCchHHHHHHHH-hhhcCCCCCCeEEEECCeEcCCCCcccccCC-CCCCEEEEEEec
Q 012759 380 GMQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 453 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~--~~~tV~~lK~~i-~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I-~~~~~i~l~~r~ 453 (457)
.|+|+|++..|++++++|+ +++||.+||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| ++|++|+|.++.
T Consensus 1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 1 MVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CCEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred CEEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 4899999999999999866 999999999999 9999999999999999999999999999999 699999998763
No 72
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.67 E-value=1.1e-16 Score=140.34 Aligned_cols=125 Identities=66% Similarity=0.876 Sum_probs=95.2
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCceEEE
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~~~i~ 80 (457)
|||+|++++|++++++|++++||.++|++|+++.|+|+++|+|+|+|+.|+|+++|++|+|.+++++|++++++++.+-.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~k~~ 80 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGGET 80 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC---CC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEeccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887766
Q ss_pred EEcc-CCc--EEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEecCcccCC
Q 012759 81 VKTL-TGK--TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 128 (457)
Q Consensus 81 vk~~-~g~--~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d 128 (457)
|+.. .|. .-.+.+..+.++.+-.+.+.-.. .+..+..|+-+-|.+
T Consensus 81 vkfs~~Gd~g~~~i~l~~~~~~~~~~~~~~i~~---~~~~~~~fsl~yl~~ 128 (169)
T 3l0w_B 81 IKFVADGDIGSGSVIIKPFVDMEHPETSIKLEM---DQPVDLTFGAKYLLD 128 (169)
T ss_dssp EEEEEECSSCEEEEEECCBCCSSCGGGCBEEEE---SSCEEEEEEHHHHHH
T ss_pred ccccccCcccceeEEEecCCCCCCcccceEEec---CCcceEEEhHHHHHH
Confidence 6643 233 34566666555432222111111 123456666655544
No 73
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.67 E-value=3.7e-17 Score=144.61 Aligned_cols=82 Identities=91% Similarity=1.230 Sum_probs=79.8
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCceEEE
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~~~i~ 80 (457)
|||||++++|++++++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.+++++||+++++++..++
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~~~f 185 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGQTF 185 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCCCCC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCCcce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred EE
Q 012759 81 VK 82 (457)
Q Consensus 81 vk 82 (457)
||
T Consensus 186 vk 187 (189)
T 3q3f_A 186 TK 187 (189)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 74
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=1.5e-16 Score=127.09 Aligned_cols=78 Identities=33% Similarity=0.432 Sum_probs=74.7
Q ss_pred cCceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
...|+|+|+...|+ +.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|..|++||
T Consensus 20 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~ 97 (100)
T 1yqb_A 20 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 97 (100)
T ss_dssp TTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCS
T ss_pred CCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCC
Confidence 46799999999886 7999999999999999999999999999999999999999999999999999999999999997
No 75
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=1.2e-16 Score=125.51 Aligned_cols=66 Identities=23% Similarity=0.355 Sum_probs=64.0
Q ss_pred CCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 390 g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
++.++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++| ++++++|.
T Consensus 29 ~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg~ 94 (100)
T 1wju_A 29 DRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQS 94 (100)
T ss_dssp SSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCCC
T ss_pred CcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECCC
Confidence 7789999999999999999999999999999999999999999999999999999999 99999985
No 76
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.66 E-value=1.3e-16 Score=126.10 Aligned_cols=72 Identities=21% Similarity=0.440 Sum_probs=67.9
Q ss_pred CeEEEEcCCCcEEEE--EecCCCcHHHHHHHH-hhhcCCCCccceEeeccEEccCCCccccccc-ccccceeEEEE
Q 012759 1 MQIFVKTLTGKTITL--EVESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR 72 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~--~v~~~dtv~~ik~ki-~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i-~~~sti~l~~~ 72 (457)
|+|+|++++|++|++ +|.+++||.++|++| +++.|+|+++|+|+|+|+.|+|+.+|++|+| .++++++++++
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvs 95 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK 95 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEe
Confidence 799999999998887 555999999999999 9999999999999999999999999999999 99999999875
No 77
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=8.9e-17 Score=127.77 Aligned_cols=77 Identities=27% Similarity=0.340 Sum_probs=74.7
Q ss_pred CceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
..|+|+|+.. |+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|..|++||
T Consensus 16 ~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g 92 (96)
T 1wx8_A 16 RIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSG 92 (96)
T ss_dssp CEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred CcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCC
Confidence 5689999998 9999999999999999999999999999999999999999999999999999999999999999998
No 78
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=1.7e-16 Score=123.22 Aligned_cols=76 Identities=92% Similarity=1.254 Sum_probs=73.5
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|++++|++++++|.+++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987754
No 79
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=3.5e-17 Score=130.45 Aligned_cols=76 Identities=24% Similarity=0.385 Sum_probs=70.7
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCc---------------cceEeeccEEcc-CCCcccccccccc
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD---------------QQRLIFAGKQLE-DGRTLADYNIQKE 64 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~---------------~q~l~~~g~~L~-~~~tl~~y~i~~~ 64 (457)
|+|+|++++|++++++|.+++||.+||++|++++|+|+. +|+|+|+|+.|. |+.||++|+|.++
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~g 87 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNR 87 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSS
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCCC
Confidence 899999999999999999999999999999999999884 569999999996 6799999999999
Q ss_pred cceeEEEEecCc
Q 012759 65 STLHLVLRLRGG 76 (457)
Q Consensus 65 sti~l~~~~~~~ 76 (457)
+++||++++++.
T Consensus 88 ~~l~lv~~lr~~ 99 (105)
T 1v2y_A 88 DEVSFIKKLGQK 99 (105)
T ss_dssp EEEEEEECSCSC
T ss_pred CEEEEEehhccC
Confidence 999999987653
No 80
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.66 E-value=1.4e-16 Score=125.69 Aligned_cols=74 Identities=36% Similarity=0.620 Sum_probs=71.4
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|++ |++++++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++++++++
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 8999999 8999999999999999999999999999999999999999999999999999999999999988764
No 81
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=1.8e-16 Score=124.24 Aligned_cols=76 Identities=37% Similarity=0.627 Sum_probs=72.9
Q ss_pred CeEEEEcCCC-cEEEE-EecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012759 1 MQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g-~~~~~-~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|++++| +++++ +|.+++||.++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG 85 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSG 85 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCS
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCC
Confidence 8999999999 79999 5999999999999999999999999999999999999999999999999999999988765
No 82
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.47 E-value=6.6e-18 Score=128.27 Aligned_cols=75 Identities=33% Similarity=0.588 Sum_probs=72.9
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecC
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~ 75 (457)
|+|||++++|++++++|++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|+++++++
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 899999999999999999999999999999999999999999999999999999999999999999999998764
No 83
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.66 E-value=4.3e-16 Score=120.90 Aligned_cols=76 Identities=29% Similarity=0.501 Sum_probs=71.5
Q ss_pred cCceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhh---cCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEec
Q 012759 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 453 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~---~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~ 453 (457)
+.+|+|+|+..+|+.+.++|++++||++||++|++. +|+|+++|+|+|+|+.|+|+.+|++|||++|++|++..+.
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence 467999999999999999999999999999999998 8999999999999999999999999999999999998864
No 84
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.4e-16 Score=128.64 Aligned_cols=74 Identities=22% Similarity=0.437 Sum_probs=70.3
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEec
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~ 74 (457)
|+|+|++++|++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++++..
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~ 75 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQK 75 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC-
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998643
No 85
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.65 E-value=2.4e-16 Score=128.41 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=73.2
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|++++|++++++|.+++||.+||.+|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999988764
No 86
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.65 E-value=3e-16 Score=128.41 Aligned_cols=79 Identities=25% Similarity=0.440 Sum_probs=73.7
Q ss_pred cCceeeEEEcCCCCEE-EEEecCCchHHHHHHHH-----hhhcCCCC--CCeEEEECCeEcCCCCcccccCCCCC-----
Q 012759 378 RGGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKE----- 444 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~-~l~v~~~~tV~~lK~~i-----~~~~gip~--~~q~l~~~g~~L~d~~tL~~~~I~~~----- 444 (457)
...|+|++++.+|+.+ .+++++++||++||++| ++++|+|+ ++|||+|.|+.|+|+.||++|+|+.|
T Consensus 14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~ 93 (126)
T 1se9_A 14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA 93 (126)
T ss_dssp CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTC
T ss_pred cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCC
Confidence 4679999999999888 79999999999999999 56778997 89999999999999999999999998
Q ss_pred -CEEEEEEecCCC
Q 012759 445 -STLHLVLRLRGG 456 (457)
Q Consensus 445 -~~i~l~~r~~GG 456 (457)
+|++|++|++||
T Consensus 94 v~tmhlVlrl~g~ 106 (126)
T 1se9_A 94 VTTMHVIIQAPVT 106 (126)
T ss_dssp CEEEEEEECCCSS
T ss_pred cEEEEEEeccCCc
Confidence 789999999997
No 87
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=6.3e-16 Score=122.46 Aligned_cols=75 Identities=29% Similarity=0.573 Sum_probs=71.6
Q ss_pred eeeEEEcCCCCEEEEEecCCchHHHHHHHHhhh---cCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCC
Q 012759 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 455 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~---~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~G 455 (457)
|+|+|++.+|+.+.++|++++||++||++|++. +|+|+++|+|+|+|+.|+|+.+|++|||++|++|++..+...
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~ 78 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCC
Confidence 789999999999999999999999999999999 899999999999999999999999999999999999987543
No 88
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.65 E-value=3.3e-16 Score=128.56 Aligned_cols=69 Identities=29% Similarity=0.593 Sum_probs=66.9
Q ss_pred CCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 012759 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 389 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG~ 457 (457)
+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+|++|++||.
T Consensus 44 ~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv~rl~GGk 112 (115)
T 1we7_A 44 NGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLALKERSGP 112 (115)
T ss_dssp SSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEEECCCSCC
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCC
Confidence 578999999999999999999999999999999999999999999999999999999999999999993
No 89
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=1.1e-16 Score=127.60 Aligned_cols=78 Identities=24% Similarity=0.393 Sum_probs=73.4
Q ss_pred CceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCC---------------CCeEEEECCeEcC-CCCcccccCCC
Q 012759 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---------------DQQRLIFAGKQLE-DGRTLADYNIQ 442 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~---------------~~q~l~~~g~~L~-d~~tL~~~~I~ 442 (457)
..|+|+|+..+|++++++|.+++||++||++|++++++|+ ++|+|+|+|+.|. |++||++|||+
T Consensus 6 ~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~ 85 (105)
T 1v2y_A 6 SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIR 85 (105)
T ss_dssp CSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCC
T ss_pred CcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCC
Confidence 4699999999999999999999999999999999999988 4679999999996 56899999999
Q ss_pred CCCEEEEEEecCCC
Q 012759 443 KESTLHLVLRLRGG 456 (457)
Q Consensus 443 ~~~~i~l~~r~~GG 456 (457)
+|++|+++.|++|.
T Consensus 86 ~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 86 NRDEVSFIKKLGQK 99 (105)
T ss_dssp SSEEEEEEECSCSC
T ss_pred CCCEEEEEehhccC
Confidence 99999999999985
No 90
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.65 E-value=1.1e-17 Score=140.24 Aligned_cols=77 Identities=96% Similarity=1.320 Sum_probs=0.4
Q ss_pred eeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 012759 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG~ 457 (457)
|+|+|++.+|+++.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.||++|||++|++|+|.+|++||.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~ 77 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 77 (128)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999993
No 91
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=5.9e-16 Score=128.54 Aligned_cols=77 Identities=30% Similarity=0.367 Sum_probs=71.0
Q ss_pred CceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
..|+|+|+.. |+.+.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|..|++||
T Consensus 31 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg 107 (125)
T 1j8c_A 31 KIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPN 107 (125)
T ss_dssp CCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC----
T ss_pred CcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCC
Confidence 4699999998 9999999999999999999999999999999999999999999999999999999999999999998
No 92
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=5.3e-16 Score=122.88 Aligned_cols=73 Identities=30% Similarity=0.597 Sum_probs=70.5
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhh---cCCCCccceEeeccEEccCCCcccccccccccceeEEEEe
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~---~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~ 73 (457)
|+|+|++++|++++++|++++||.++|++|+++ .|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++.+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~ 76 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 76 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESS
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeC
Confidence 999999999999999999999999999999999 8999999999999999999999999999999999998853
No 93
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.64 E-value=3.5e-16 Score=126.34 Aligned_cols=75 Identities=21% Similarity=0.416 Sum_probs=70.3
Q ss_pred ceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecC
Q 012759 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 454 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~ 454 (457)
.|+|+|++.+|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++.++..
T Consensus 1 mm~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~ 75 (106)
T 3m62_B 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQK 75 (106)
T ss_dssp --CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC-
T ss_pred CEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCC
Confidence 389999999999999999999999999999999999999999999999999999999999999999999998743
No 94
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.64 E-value=2.5e-16 Score=129.79 Aligned_cols=75 Identities=24% Similarity=0.378 Sum_probs=69.1
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhh------hcCCC--CccceEeeccEEccCCCccccccccccc--ceeEE
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKES--TLHLV 70 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~------~~gip--~~~q~l~~~g~~L~~~~tl~~y~i~~~s--ti~l~ 70 (457)
|+|+|++++|++++++|+++|||.+||++|++ ++|+| +++|+|+|+|+.|+|++||++|+|..++ ++||+
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv 97 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 97 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 68999999999999999999999999999999 88985 8999999999999999999999998655 78998
Q ss_pred EEecC
Q 012759 71 LRLRG 75 (457)
Q Consensus 71 ~~~~~ 75 (457)
++++.
T Consensus 98 ~r~~~ 102 (125)
T 2gow_A 98 ARETL 102 (125)
T ss_dssp ECSCC
T ss_pred ecCCC
Confidence 88754
No 95
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.64 E-value=1.5e-17 Score=142.40 Aligned_cols=76 Identities=97% Similarity=1.333 Sum_probs=0.0
Q ss_pred eeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
|+|+|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|++|++||
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GG 76 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999
No 96
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.64 E-value=5.1e-16 Score=120.49 Aligned_cols=73 Identities=30% Similarity=0.540 Sum_probs=69.9
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhh---cCCCCccceEeeccEEccCCCcccccccccccceeEEEEe
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~---~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~ 73 (457)
|+|+|++.+|++++++|.+++||.++|++|+++ .|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++.+.
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence 799999999999999999999999999999998 8999999999999999999999999999999999998764
No 97
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=5.4e-16 Score=119.15 Aligned_cols=73 Identities=40% Similarity=0.690 Sum_probs=70.8
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEe
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~ 73 (457)
|+|+|++.+|++++++|.+++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|+++++
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999998765
No 98
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.63 E-value=4.9e-16 Score=123.12 Aligned_cols=73 Identities=23% Similarity=0.240 Sum_probs=68.8
Q ss_pred CeEEEEcCCC--cEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCccccccc-ccccceeEEEEe
Q 012759 1 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g--~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i-~~~sti~l~~~~ 73 (457)
|+|||++..| .+++++|.|++||.+||++|++++|+|+++|+++|+|+.++|++||++|+| ++++++||++-.
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence 6899999885 799999999999999999999999999999999999999999999999999 699999998753
No 99
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.63 E-value=7.3e-16 Score=125.11 Aligned_cols=79 Identities=23% Similarity=0.350 Sum_probs=71.6
Q ss_pred cCceeeEEEcCCCCEEEEEecCCchHHHHHHHHhh------hcCC--CCCCeEEEECCeEcCCCCcccccCCCCC--CEE
Q 012759 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--STL 447 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~------~~gi--p~~~q~l~~~g~~L~d~~tL~~~~I~~~--~~i 447 (457)
...|+|+|++.+|++++++|.+++||++||++|++ ++++ |+++|||+|.|+.|+|+.||++|+|..+ ++|
T Consensus 14 ~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tl 93 (116)
T 1wgh_A 14 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 93 (116)
T ss_dssp SSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 35699999999999999999999999999999999 6675 6999999999999999999999999866 678
Q ss_pred EEEEecCCC
Q 012759 448 HLVLRLRGG 456 (457)
Q Consensus 448 ~l~~r~~GG 456 (457)
||++|+.+.
T Consensus 94 hLvlr~~~~ 102 (116)
T 1wgh_A 94 HLVARETLP 102 (116)
T ss_dssp EEEECSSCS
T ss_pred EEEccCCCC
Confidence 889887754
No 100
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.63 E-value=6.8e-16 Score=124.88 Aligned_cols=77 Identities=34% Similarity=0.442 Sum_probs=73.8
Q ss_pred CceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
..|+|+|+...|+ +.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|..|++||
T Consensus 16 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 16 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 92 (106)
T ss_dssp SEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCC
T ss_pred ceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 4589999998886 7999999999999999999999999999999999999999999999999999999999999998
No 101
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.63 E-value=4.1e-16 Score=123.07 Aligned_cols=76 Identities=29% Similarity=0.482 Sum_probs=71.5
Q ss_pred CeEEEEcCCCc--EEEEEecCCCcHHHHHHHHhhhc--CCCCccceEeeccEEccCCCccccc--ccccccceeEEEEec
Q 012759 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLRLR 74 (457)
Q Consensus 1 ~~i~~~~~~g~--~~~~~v~~~dtv~~ik~ki~~~~--gip~~~q~l~~~g~~L~~~~tl~~y--~i~~~sti~l~~~~~ 74 (457)
|+|+|++++|+ ++++++.+++||.++|++|+++. |+|+++|+|+|.|+.|+|+.+|++| +|.+++++||+++++
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~~~ 87 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNVK 87 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECCCC
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeCCC
Confidence 89999999998 77888889999999999999998 9999999999999999999999999 999999999998876
Q ss_pred Cc
Q 012759 75 GG 76 (457)
Q Consensus 75 ~~ 76 (457)
++
T Consensus 88 gg 89 (93)
T 1wgd_A 88 SG 89 (93)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 102
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.63 E-value=4.3e-16 Score=125.04 Aligned_cols=78 Identities=21% Similarity=0.397 Sum_probs=73.3
Q ss_pred CceeeEEEcCCC----CEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCC-CcccccCCCCCCEEEEEEec
Q 012759 379 GGMQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRL 453 (457)
Q Consensus 379 ~~~~i~v~~~~g----~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~-~tL~~~~I~~~~~i~l~~r~ 453 (457)
..|+|+|++.++ +++.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+ .+|++|||++|++|+|..+.
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~ 85 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD 85 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence 358999998654 7999999999999999999999999999999999999999988 69999999999999999999
Q ss_pred CCC
Q 012759 454 RGG 456 (457)
Q Consensus 454 ~GG 456 (457)
+||
T Consensus 86 ~gg 88 (102)
T 1v5o_A 86 NVG 88 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 998
No 103
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.63 E-value=8.2e-16 Score=121.50 Aligned_cols=76 Identities=20% Similarity=0.413 Sum_probs=69.8
Q ss_pred cCceeeEEEcCCCCEEEE--EecCCchHHHHHHHH-hhhcCCCCCCeEEEECCeEcCCCCcccccCC-CCCCEEEEEEec
Q 012759 378 RGGMQIFVKTLTGKTITL--EVESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 453 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l--~v~~~~tV~~lK~~i-~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I-~~~~~i~l~~r~ 453 (457)
..+|+|+|++..|+++++ +|++++||++||++| ++..|+|+++|+|+|+|+.|+|+.+|++||| ++|++|++.++-
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 467999999999998777 566999999999999 8889999999999999999999999999999 999999998753
No 104
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.63 E-value=5.1e-16 Score=122.03 Aligned_cols=71 Identities=23% Similarity=0.294 Sum_probs=64.3
Q ss_pred EEEcCC----CcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecC
Q 012759 4 FVKTLT----GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (457)
Q Consensus 4 ~~~~~~----g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~ 75 (457)
-|+..+ |++++++|++++||.++|++|++++|+|+++|+|+|+|++|+|++||++|+|.+++++ +++++++
T Consensus 19 ~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg 93 (100)
T 1wju_A 19 EVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQ 93 (100)
T ss_dssp EEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCC
T ss_pred EEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECC
Confidence 344555 7899999999999999999999999999999999999999999999999999999999 6666554
No 105
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.63 E-value=1.1e-15 Score=116.28 Aligned_cols=71 Identities=34% Similarity=0.574 Sum_probs=68.8
Q ss_pred eeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEe
Q 012759 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r 452 (457)
|+|+|+. .|+.+.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++..+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 8999998 8999999999999999999999999999999999999999999999999999999999999875
No 106
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.63 E-value=8.1e-16 Score=124.34 Aligned_cols=79 Identities=27% Similarity=0.449 Sum_probs=74.8
Q ss_pred cCceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
...|+|+|++.+|+++.++|++++||++||.+|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|..+...+
T Consensus 21 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~ 99 (106)
T 1ttn_A 21 GYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQ 99 (106)
T ss_dssp CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSC
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 4569999999999999999999999999999999999999999999999999999999999999999999999987654
No 107
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.62 E-value=1.6e-15 Score=121.42 Aligned_cols=79 Identities=30% Similarity=0.378 Sum_probs=74.4
Q ss_pred ecCceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 377 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 377 ~~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
....|+|+|+.. |+.+.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|+|..|+++.
T Consensus 22 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~~ 100 (101)
T 2klc_A 22 HPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQNR 100 (101)
T ss_dssp -CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSSC
T ss_pred CCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 356799999998 8899999999999999999999999999999999999999999999999999999999999998764
No 108
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.62 E-value=2.4e-16 Score=126.06 Aligned_cols=91 Identities=32% Similarity=0.533 Sum_probs=67.6
Q ss_pred cccccccccCceEEEEEEecCceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccc
Q 012759 359 TLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438 (457)
Q Consensus 359 ~l~~~~i~~~~~l~l~~~~~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~ 438 (457)
..++|.|+ +|.++.......+.|+|+. .|+++.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++
T Consensus 9 ~~~~~~~~--~t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ 85 (101)
T 3m63_B 9 PMSDYDIP--TTENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVES 85 (101)
T ss_dssp ----------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTT
T ss_pred CccccCCC--cceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHH
Confidence 45677765 5666665555567788887 88899999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCEEEEEEe
Q 012759 439 YNIQKESTLHLVLR 452 (457)
Q Consensus 439 ~~I~~~~~i~l~~r 452 (457)
|||++|++|+|..+
T Consensus 86 ~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 86 YHIQDGHSVHLVKS 99 (101)
T ss_dssp TTCCTTEEEEECCC
T ss_pred CCCCCCCEEEEEeC
Confidence 99999999999865
No 109
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.61 E-value=1.3e-15 Score=115.86 Aligned_cols=72 Identities=33% Similarity=0.559 Sum_probs=69.1
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEe
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~ 73 (457)
|+|+|++ +|++++++|++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++.+.
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 7899999 99999999999999999999999999999999999999999999999999999999999997653
No 110
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.61 E-value=1.3e-15 Score=125.41 Aligned_cols=78 Identities=23% Similarity=0.342 Sum_probs=72.5
Q ss_pred CceeeEEEcCCCCEEEEEecCCchHHHHHHHHhh------hcCCC--CCCeEEEECCeEcCCCCcccccCCCCCC--EEE
Q 012759 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKES--TLH 448 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~------~~gip--~~~q~l~~~g~~L~d~~tL~~~~I~~~~--~i~ 448 (457)
..|.|+|++.+|++++++|++++||++||++|++ ++|+| +++|||+|.|+.|+|+.||++|+|..++ +++
T Consensus 16 ~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlh 95 (125)
T 2gow_A 16 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMH 95 (125)
T ss_dssp TCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEE
T ss_pred CeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEE
Confidence 4589999999999999999999999999999999 78884 9999999999999999999999999766 789
Q ss_pred EEEecCCC
Q 012759 449 LVLRLRGG 456 (457)
Q Consensus 449 l~~r~~GG 456 (457)
|++|++||
T Consensus 96 lv~r~~~~ 103 (125)
T 2gow_A 96 LVARETLP 103 (125)
T ss_dssp EEECSCCS
T ss_pred EEecCCCC
Confidence 99999876
No 111
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.61 E-value=3.9e-16 Score=124.77 Aligned_cols=93 Identities=31% Similarity=0.518 Sum_probs=67.6
Q ss_pred CCcccccccccCCcceEEEEeecceeeeEeeccCceEEEeecCCChHHHHHHHHhhhhCCCCCceEEEECCeecCCCCCc
Q 012759 129 GRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208 (457)
Q Consensus 129 ~~tl~~y~i~~~s~i~l~~~~~~~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL 208 (457)
..++++|.| +++.++..+....+.|+|++ +|+.+.++|++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|
T Consensus 7 ~~~~~~~~~--~~t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL 83 (101)
T 3m63_B 7 HHPMSDYDI--PTTENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTV 83 (101)
T ss_dssp ------------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBT
T ss_pred cCCccccCC--CcceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcH
Confidence 457889988 46666666655567788887 899999999999999999999999999999999999999999999999
Q ss_pred cccCCCcCcEEEEEEE
Q 012759 209 ADYNIQKESTLHLVLR 224 (457)
Q Consensus 209 ~~y~I~~~~~i~l~~~ 224 (457)
++|||++|++|+++.+
T Consensus 84 ~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 84 ESYHIQDGHSVHLVKS 99 (101)
T ss_dssp TTTTCCTTEEEEECCC
T ss_pred HHCCCCCCCEEEEEeC
Confidence 9999999999999865
No 112
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.61 E-value=7.2e-16 Score=122.17 Aligned_cols=70 Identities=24% Similarity=0.394 Sum_probs=65.3
Q ss_pred CeEEEEcCCCc--EEEEEecCCCcHHHHHHHHhhh-cCCC-CccceEeeccEEccCCCccccc--ccccccceeEE
Q 012759 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK-EGIP-PDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLV 70 (457)
Q Consensus 1 ~~i~~~~~~g~--~~~~~v~~~dtv~~ik~ki~~~-~gip-~~~q~l~~~g~~L~~~~tl~~y--~i~~~sti~l~ 70 (457)
|+|+|++++|+ +++++|++++||.+||++|+++ +|+| +++|+|+|+|++|+|+.+|++| +|.+++++||+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 78999999998 7899999999999999999986 6766 4999999999999999999999 99999999985
No 113
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.61 E-value=9.3e-16 Score=123.98 Aligned_cols=74 Identities=28% Similarity=0.525 Sum_probs=71.3
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEec
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~ 74 (457)
|+|+|++++|++++++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++.+..
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~ 97 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQP 97 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCS
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999988643
No 114
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.60 E-value=2e-15 Score=123.08 Aligned_cols=78 Identities=94% Similarity=1.272 Sum_probs=74.4
Q ss_pred CceEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEecCcccCCCCcccccccccCCcceEEEEeecc
Q 012759 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (457)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~~~ 152 (457)
..|+|+|++.+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++.++++||
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999988765
No 115
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.60 E-value=1.7e-15 Score=120.94 Aligned_cols=74 Identities=35% Similarity=0.490 Sum_probs=70.7
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecC
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~ 75 (457)
|+|+|++.+|+ ++++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.++++++++.+.++
T Consensus 23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~ 96 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH 96 (100)
T ss_dssp EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCC
Confidence 78999999997 799999999999999999999999999999999999999999999999999999999987654
No 116
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.59 E-value=1.7e-15 Score=123.53 Aligned_cols=79 Identities=33% Similarity=0.468 Sum_probs=75.2
Q ss_pred cCceEEEEEcc---CCcEEEEEEcC-CCCHHHHHHHHhhhhCCCCCCeEEEecCcccCCCCcccccccccCCcceEEEEe
Q 012759 74 RGGMQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (457)
Q Consensus 74 ~~~~~i~vk~~---~g~~~~l~v~~-~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~ 149 (457)
.+.|+|+|+++ +|+.+.++|++ ++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|++++
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 46799999998 89999999998 999999999999999999999999999999999999999999999999999988
Q ss_pred ecc
Q 012759 150 RGG 152 (457)
Q Consensus 150 ~~~ 152 (457)
+||
T Consensus 105 ~GG 107 (111)
T 1we6_A 105 RSG 107 (111)
T ss_dssp CCS
T ss_pred CCC
Confidence 776
No 117
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.59 E-value=1e-16 Score=134.18 Aligned_cols=76 Identities=97% Similarity=1.333 Sum_probs=0.0
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|||++++|++++++|++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG 76 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (128)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999887765
No 118
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.59 E-value=1.3e-15 Score=120.99 Aligned_cols=75 Identities=28% Similarity=0.373 Sum_probs=71.7
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|++. |++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++++.+++
T Consensus 18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g 92 (96)
T 1wx8_A 18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSG 92 (96)
T ss_dssp EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCC
Confidence 78999999 9999999999999999999999999999999999999999999999999999999999999877653
No 119
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.58 E-value=1.2e-16 Score=136.60 Aligned_cols=76 Identities=97% Similarity=1.333 Sum_probs=0.0
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|||||++++|++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GG 76 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987764
No 120
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.57 E-value=7.5e-15 Score=116.29 Aligned_cols=73 Identities=23% Similarity=0.245 Sum_probs=67.9
Q ss_pred ceeeEEEcCCC--CEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCC-CCCCEEEEEEe
Q 012759 380 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR 452 (457)
Q Consensus 380 ~~~i~v~~~~g--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I-~~~~~i~l~~r 452 (457)
.|+|+|++..+ .+++++|.|++||++||++|++++||||++|||+|+|+.++|+.||++||| ++|++++|.+.
T Consensus 24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 47899998774 689999999999999999999999999999999999999999999999999 59999999873
No 121
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.56 E-value=2.2e-16 Score=138.40 Aligned_cols=72 Identities=29% Similarity=0.403 Sum_probs=0.4
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCce
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 77 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~~ 77 (457)
|||||++++|++++|+|+++|||.+||++|++++|||+++|+|+|+|++|+|+++|+ ++|||||+++++++.
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~ 72 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGK 72 (189)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCc
Confidence 999999999999999999999999999999999999999999999999999999998 899999999988763
No 122
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.56 E-value=6.4e-15 Score=117.81 Aligned_cols=73 Identities=33% Similarity=0.450 Sum_probs=70.2
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEec
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~ 74 (457)
|+|+|++. |++++++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.++++++++.+.+
T Consensus 26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~ 98 (101)
T 2klc_A 26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQ 98 (101)
T ss_dssp EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCS
T ss_pred EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence 78999999 99999999999999999999999999999999999999999999999999999999999988754
No 123
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.56 E-value=5.7e-15 Score=122.59 Aligned_cols=75 Identities=31% Similarity=0.401 Sum_probs=69.5
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|++. |++++++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|+|+.+|.+|+|.++++++++.+..++
T Consensus 33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg 107 (125)
T 1j8c_A 33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPN 107 (125)
T ss_dssp EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC----
T ss_pred EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCC
Confidence 78999999 9999999999999999999999999999999999999999999999999999999999999887654
No 124
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.55 E-value=5e-15 Score=118.78 Aligned_cols=76 Identities=20% Similarity=0.376 Sum_probs=70.3
Q ss_pred CeEEEEcCCC----cEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCC-CcccccccccccceeEEEEecC
Q 012759 1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG 75 (457)
Q Consensus 1 ~~i~~~~~~g----~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~-~tl~~y~i~~~sti~l~~~~~~ 75 (457)
|+|+|++.+| ++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+ ++|++|+|.+++++|++.+.++
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~~g 87 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDNV 87 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCCC
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECCCC
Confidence 7999999765 7999999999999999999999999999999999999999887 6999999999999999887654
Q ss_pred c
Q 012759 76 G 76 (457)
Q Consensus 76 ~ 76 (457)
+
T Consensus 88 g 88 (102)
T 1v5o_A 88 G 88 (102)
T ss_dssp C
T ss_pred C
Confidence 3
No 125
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.54 E-value=4.2e-16 Score=136.69 Aligned_cols=72 Identities=29% Similarity=0.394 Sum_probs=0.4
Q ss_pred eeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 012759 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG~ 457 (457)
|+|||++++|++++++|++++||.+||.+|++.+|||+++|+|+|+|++|+|+.||+ ++|||+|++|++||.
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~ 72 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGK 72 (189)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCc
Confidence 789999999999999999999999999999999999999999999999999999999 899999999999993
No 126
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.54 E-value=6.8e-15 Score=116.55 Aligned_cols=72 Identities=24% Similarity=0.358 Sum_probs=65.6
Q ss_pred CceeeEEEcCCCC--EEEEEecCCchHHHHHHHHhhh-cCCCC-CCeEEEECCeEcCCCCccccc--CCCCCCEEEEE
Q 012759 379 GGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK-EGIPP-DQQRLIFAGKQLEDGRTLADY--NIQKESTLHLV 450 (457)
Q Consensus 379 ~~~~i~v~~~~g~--~~~l~v~~~~tV~~lK~~i~~~-~gip~-~~q~l~~~g~~L~d~~tL~~~--~I~~~~~i~l~ 450 (457)
..|+|+|++.+|+ .++++|++++||++||++|+++ .|+|| ++|||+|+|+.|+|+.+|++| +|+++++|+|+
T Consensus 22 ~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 22 HPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp -CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred CeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 5799999999988 6799999999999999999996 56665 999999999999999999999 99999999974
No 127
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.54 E-value=8.8e-15 Score=118.31 Aligned_cols=74 Identities=35% Similarity=0.490 Sum_probs=70.6
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecC
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~ 75 (457)
|+|+|++.+|+ +.++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++.+.++
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~ 91 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH 91 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCC
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 78999999997 799999999999999999999999999999999999999999999999999999999987654
No 128
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.53 E-value=2.3e-14 Score=112.44 Aligned_cols=80 Identities=16% Similarity=0.379 Sum_probs=76.6
Q ss_pred cCceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 012759 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG~ 457 (457)
+..|+|+|++.+|+.+.++|.+++++..|+.+++++.|+|++++||+|+|+.|.++.|+++|++++|++|++.++++||+
T Consensus 5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG~ 84 (94)
T 2io1_B 5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 84 (94)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEESC
T ss_pred CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999994
No 129
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=5.7e-15 Score=116.78 Aligned_cols=72 Identities=19% Similarity=0.298 Sum_probs=67.9
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEee--ccEEccCCCcccccccccccceeEEEEe
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~--~g~~L~~~~tl~~y~i~~~sti~l~~~~ 73 (457)
|++|+.+.+|++++++|+++|||.++|++|++++|||+++|+|++ .|+ |+|+.+|++|+|..++++|++++.
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSS
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecC
Confidence 789999999999999999999999999999999999999999986 566 999999999999999999998864
No 130
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.52 E-value=1.6e-14 Score=118.44 Aligned_cols=79 Identities=29% Similarity=0.588 Sum_probs=72.1
Q ss_pred cCceEEEEEcc----------CCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEecCcccCCCCcccccccccCCcc
Q 012759 74 RGGMQIFVKTL----------TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 143 (457)
Q Consensus 74 ~~~~~i~vk~~----------~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i 143 (457)
.+.++|.|+.+ +|+.+.++|++++||.+||++|+...|+|+++|+|+|+|+.|+|+.+|++|+|.++++|
T Consensus 23 ~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i 102 (115)
T 1we7_A 23 KGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102 (115)
T ss_dssp CSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEE
T ss_pred CCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEE
Confidence 34566777654 57899999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeecc
Q 012759 144 HLVLRLRGG 152 (457)
Q Consensus 144 ~l~~~~~~~ 152 (457)
||+++++||
T Consensus 103 ~lv~rl~GG 111 (115)
T 1we7_A 103 HLALKERSG 111 (115)
T ss_dssp EEEECCCSC
T ss_pred EEEEEcCCC
Confidence 999998776
No 131
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=8.6e-15 Score=113.64 Aligned_cols=69 Identities=23% Similarity=0.305 Sum_probs=64.4
Q ss_pred CeEEEEcCCCcEE--EE-EecCCCcHHHHHHHHhh-hcCCCCccceEeec--cEEccCCCcccccccccccceeE
Q 012759 1 MQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQD-KEGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL 69 (457)
Q Consensus 1 ~~i~~~~~~g~~~--~~-~v~~~dtv~~ik~ki~~-~~gip~~~q~l~~~--g~~L~~~~tl~~y~i~~~sti~l 69 (457)
|+|+|+++.|+.+ ++ +|+|++||.+||++|++ +.|+|+++|+|+|. |+.|+|+.||++|+|.+++++++
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 8999999998775 58 99999999999999999 58999999999987 99999999999999999999876
No 132
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.52 E-value=3.6e-14 Score=109.70 Aligned_cols=69 Identities=29% Similarity=0.459 Sum_probs=64.6
Q ss_pred eEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEE
Q 012759 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 383 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~ 451 (457)
++++...|+.+.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|+|..
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~ 82 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMA 82 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEEC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEE
Confidence 445567899999999999999999999999999999999999999999999999999999999999875
No 133
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.52 E-value=3.9e-14 Score=112.12 Aligned_cols=74 Identities=27% Similarity=0.410 Sum_probs=70.1
Q ss_pred CceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCC-CcccccCCCCCCEEEEEEecCC
Q 012759 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG 455 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~-~tL~~~~I~~~~~i~l~~r~~G 455 (457)
..|+|+|+..+|+.+.++|++++||.+||++|++.+ +++|+|+|+|+.|+|+ .+|++|||++|++|+|..+..+
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~ 80 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG 80 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence 569999999999999999999999999999999998 8999999999999999 9999999999999999998655
No 134
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.51 E-value=3e-14 Score=111.43 Aligned_cols=73 Identities=22% Similarity=0.448 Sum_probs=68.6
Q ss_pred CceeeEEEcCCCCEEEE-EecCCchHHHHHHHHhhhcCCCCCCeEEE---ECCeEcCCCCcccccCCCCCCEEEEEEe
Q 012759 379 GGMQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l-~v~~~~tV~~lK~~i~~~~gip~~~q~l~---~~g~~L~d~~tL~~~~I~~~~~i~l~~r 452 (457)
..|+|+|+. .|+++.+ +|++++||.+||++|++++|+|+++|+|+ |+|+.|+|+.+|++|||++|++|+|...
T Consensus 6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence 468999996 7899999 99999999999999999999999999999 9999999999999999999999998753
No 135
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=6.6e-14 Score=111.77 Aligned_cols=73 Identities=16% Similarity=0.294 Sum_probs=68.3
Q ss_pred ceeeEEE-cCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEe
Q 012759 380 GMQIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 380 ~~~i~v~-~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r 452 (457)
.+.|.|+ ...|+.++++++++.||.+||+.++...++|++.|+|+|+|+.|.|+.||++|||++|+||||+.+
T Consensus 15 ~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~ 88 (118)
T 2daf_A 15 LATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIF 88 (118)
T ss_dssp CEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEE
T ss_pred cEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEe
Confidence 4667776 667889999999999999999999999999999999999999999999999999999999999987
No 136
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.50 E-value=2.9e-14 Score=111.53 Aligned_cols=72 Identities=21% Similarity=0.412 Sum_probs=68.4
Q ss_pred CeEEEEcCCCcEEEE-EecCCCcHHHHHHHHhhhcCCCCccceEe---eccEEccCCCcccccccccccceeEEEEe
Q 012759 1 MQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~-~v~~~dtv~~ik~ki~~~~gip~~~q~l~---~~g~~L~~~~tl~~y~i~~~sti~l~~~~ 73 (457)
|+|+|+. +|+++++ +|.+++||.++|++|+++.|+|+++|+|+ |.|+.|+|+.+|++|+|.++++++|+...
T Consensus 8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 7899996 8999999 99999999999999999999999999999 99999999999999999999999997643
No 137
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.50 E-value=3.2e-14 Score=112.65 Aligned_cols=71 Identities=25% Similarity=0.364 Sum_probs=67.5
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCC-CcccccccccccceeEEEEec
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLR 74 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~-~tl~~y~i~~~sti~l~~~~~ 74 (457)
|+|+|++.+|++++++|.+++||.+||++|+++. +++|+|+|+|+.|+|+ .+|++|+|.+++++|++++..
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~ 79 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPP 79 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCC
Confidence 7999999999999999999999999999999998 8899999999999999 999999999999999988654
No 138
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.49 E-value=6.4e-14 Score=113.28 Aligned_cols=76 Identities=28% Similarity=0.393 Sum_probs=69.9
Q ss_pred CceeeEEEcCCC---CEEEEEecC---------CchHHHHHHHHhhhc--CCCCCC-eEEEECCeEcCCCCcccccCCCC
Q 012759 379 GGMQIFVKTLTG---KTITLEVES---------SDTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQK 443 (457)
Q Consensus 379 ~~~~i~v~~~~g---~~~~l~v~~---------~~tV~~lK~~i~~~~--gip~~~-q~l~~~g~~L~d~~tL~~~~I~~ 443 (457)
..|+|+|+...+ +.+.+++++ ++||.+||++|++.+ |+|+++ |+|+|+|+.|+|+.+|++|||++
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~ 90 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQP 90 (107)
T ss_dssp CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCT
T ss_pred CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCC
Confidence 458999999888 789999554 499999999999999 999999 99999999999999999999999
Q ss_pred CCEEEEEEecC
Q 012759 444 ESTLHLVLRLR 454 (457)
Q Consensus 444 ~~~i~l~~r~~ 454 (457)
|++|+|..|..
T Consensus 91 g~~i~lv~~~~ 101 (107)
T 1x1m_A 91 GSTVHVLRKSW 101 (107)
T ss_dssp TCEEEEEESSC
T ss_pred CCEEEEEeCCC
Confidence 99999998764
No 139
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.49 E-value=5e-14 Score=108.89 Aligned_cols=70 Identities=29% Similarity=0.452 Sum_probs=66.7
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEE
Q 012759 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (457)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~ 72 (457)
+++++.+|++++++|++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.++++++++..
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 5788899999999999999999999999999999999999999999999999999999999999998754
No 140
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.49 E-value=1.6e-13 Score=106.78 Aligned_cols=80 Identities=16% Similarity=0.379 Sum_probs=76.5
Q ss_pred cCceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 012759 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG~ 457 (457)
+..|+|.|++.+|+.+.++|.+++++..|+...+++.|+|+++++|+|+|+.|.++.|+++|++++|++|++..+++||+
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg~ 82 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 82 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCCC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999994
No 141
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.48 E-value=4.9e-14 Score=111.46 Aligned_cols=71 Identities=17% Similarity=0.292 Sum_probs=66.8
Q ss_pred CeEEEEcCCCcEE-EEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEe
Q 012759 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g~~~-~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~ 73 (457)
|+|+|+. +|+++ .++|.+++||.+||++|+++.|+|+++|+|+|.|+.|+|+ +|++|+|.++++++|+...
T Consensus 8 m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~ 79 (96)
T 1wgg_A 8 YSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSA 79 (96)
T ss_dssp EEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCC
T ss_pred EEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecc
Confidence 7899995 79999 5999999999999999999999999999999999999999 9999999999999997654
No 142
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.48 E-value=6e-14 Score=110.94 Aligned_cols=72 Identities=18% Similarity=0.326 Sum_probs=66.7
Q ss_pred CceeeEEEcCCCCEE-EEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEe
Q 012759 379 GGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~-~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r 452 (457)
..|+|+|+. .|+++ .++|++++||.+||++|++.+|+|+++|+|+|.|+.|+|+ +|++|||++|++|+|...
T Consensus 6 ~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~ 78 (96)
T 1wgg_A 6 SGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGS 78 (96)
T ss_dssp CEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCC
T ss_pred cEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEec
Confidence 458899995 68899 6999999999999999999999999999999999999999 999999999999998653
No 143
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=3.6e-14 Score=112.16 Aligned_cols=74 Identities=19% Similarity=0.275 Sum_probs=68.2
Q ss_pred ceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEE--CCeEcCCCCcccccCCCCCCEEEEEEecC
Q 012759 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLRLR 454 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~--~g~~L~d~~tL~~~~I~~~~~i~l~~r~~ 454 (457)
.|.+++....|++++++|++++||++||++|++++||||++|+|+| .|+ |+|+.+|++|+|++|++|+|+++-.
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~ 83 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDL 83 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSS
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCC
Confidence 5788888889999999999999999999999999999999999987 566 9999999999999999999988743
No 144
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=8e-14 Score=111.26 Aligned_cols=78 Identities=15% Similarity=0.248 Sum_probs=71.1
Q ss_pred ceEEEEE-ccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEecCcccCCCCcccccccccCCcceEEEEeecce
Q 012759 76 GMQIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (457)
Q Consensus 76 ~~~i~vk-~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~~~~ 153 (457)
.+.|.|+ ...|+.+.++++++.||.+||++++...++|+++|+|+|+||.|.|+.||.+|||++|.+|||+.+....-
T Consensus 15 ~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~p~ 93 (118)
T 2daf_A 15 LATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTNPD 93 (118)
T ss_dssp CEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESCTT
T ss_pred cEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCCCc
Confidence 4667776 66788999999999999999999999999999999999999999999999999999999999999865443
No 145
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.47 E-value=8.2e-14 Score=109.49 Aligned_cols=69 Identities=14% Similarity=0.203 Sum_probs=62.6
Q ss_pred eEEEEcCCC--cEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeec--cE---Ec-cCCCcccccccccccceeEE
Q 012759 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GK---QL-EDGRTLADYNIQKESTLHLV 70 (457)
Q Consensus 2 ~i~~~~~~g--~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~--g~---~L-~~~~tl~~y~i~~~sti~l~ 70 (457)
.|+|+..++ ++++++|++++||.+||+||++++|||+++|+|+|. |+ +| +|+++|++|+|.+++++|++
T Consensus 17 ~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 17 KVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp EEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred EEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence 578887766 489999999999999999999999999999999998 44 45 89999999999999999986
No 146
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.47 E-value=5.7e-14 Score=113.56 Aligned_cols=73 Identities=29% Similarity=0.403 Sum_probs=68.3
Q ss_pred CeEEEEcCCC---cEEEEEec--------C-CCcHHHHHHHHhhhc--CCCCcc-ceEeeccEEccCCCccccccccccc
Q 012759 1 MQIFVKTLTG---KTITLEVE--------S-SDTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQKES 65 (457)
Q Consensus 1 ~~i~~~~~~g---~~~~~~v~--------~-~dtv~~ik~ki~~~~--gip~~~-q~l~~~g~~L~~~~tl~~y~i~~~s 65 (457)
|+|+|++.+| +++++++. + ++||.+||++|+++. |+|+++ |+|+|.|+.|+|+++|++|+|.+++
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~ 92 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGS 92 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCCC
Confidence 7899999999 89999954 5 499999999999999 999999 9999999999999999999999999
Q ss_pred ceeEEEEe
Q 012759 66 TLHLVLRL 73 (457)
Q Consensus 66 ti~l~~~~ 73 (457)
++|++.+.
T Consensus 93 ~i~lv~~~ 100 (107)
T 1x1m_A 93 TVHVLRKS 100 (107)
T ss_dssp EEEEEESS
T ss_pred EEEEEeCC
Confidence 99998864
No 147
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.46 E-value=1.5e-13 Score=108.14 Aligned_cols=74 Identities=24% Similarity=0.453 Sum_probs=67.9
Q ss_pred CceeeEEEcCCCCEEEEEecCC-----chHHHHHHHHhhhcCCCCCCeEEEECCeEcCC-CCcccccCCCCCCEEEEEEe
Q 012759 379 GGMQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~-----~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d-~~tL~~~~I~~~~~i~l~~r 452 (457)
..|+|+|+. .|+.+.++|+++ +||.+||++|++.+|+|+++|+|+|+|+.|+| +.+|++|||++|++|+|..+
T Consensus 6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~ 84 (92)
T 1wxv_A 6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK 84 (92)
T ss_dssp SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence 468999998 588999999995 99999999999999999999999999999998 56899999999999999875
Q ss_pred c
Q 012759 453 L 453 (457)
Q Consensus 453 ~ 453 (457)
.
T Consensus 85 ~ 85 (92)
T 1wxv_A 85 K 85 (92)
T ss_dssp C
T ss_pred C
Confidence 3
No 148
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.46 E-value=1.3e-13 Score=130.63 Aligned_cols=77 Identities=94% Similarity=1.277 Sum_probs=72.4
Q ss_pred cCceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecC
Q 012759 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 454 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~ 454 (457)
...|+|+|+..+|+++.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|||+++++|+|++|+|
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999986
No 149
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.46 E-value=2e-13 Score=107.34 Aligned_cols=72 Identities=14% Similarity=0.182 Sum_probs=63.5
Q ss_pred CceeeEEEcCCC--CEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEC--Ce---Ec-CCCCcccccCCCCCCEEEEE
Q 012759 379 GGMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GK---QL-EDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 379 ~~~~i~v~~~~g--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~--g~---~L-~d~~tL~~~~I~~~~~i~l~ 450 (457)
..+.|+|+...+ +.+++++++++||++||++|+.++|||+++|||+|. |+ .| +|+.+|++|||++|++|+|+
T Consensus 14 ~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 14 DFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp CEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred CeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence 346778877655 489999999999999999999999999999999997 55 55 89999999999999999985
No 150
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.45 E-value=8.5e-14 Score=107.36 Aligned_cols=70 Identities=17% Similarity=0.274 Sum_probs=62.1
Q ss_pred EEEEc--CCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEee-------ccEEccCCCcccccccccccceeEEEE
Q 012759 3 IFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLR 72 (457)
Q Consensus 3 i~~~~--~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~-------~g~~L~~~~tl~~y~i~~~sti~l~~~ 72 (457)
|.|.. ..++.+..++++++||.+||+||++++|+|+++|+|+| .|++|+|+++|.+|+|++++++|++-.
T Consensus 5 v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 5 VSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL 83 (86)
T ss_dssp EEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred EEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence 44543 34567789999999999999999999999999999996 589999999999999999999999864
No 151
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=7.4e-14 Score=108.32 Aligned_cols=70 Identities=23% Similarity=0.294 Sum_probs=64.5
Q ss_pred ceeeEEEcCCCCEE--EE-EecCCchHHHHHHHHhh-hcCCCCCCeEEEEC--CeEcCCCCcccccCCCCCCEEEE
Q 012759 380 GMQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQD-KEGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL 449 (457)
Q Consensus 380 ~~~i~v~~~~g~~~--~l-~v~~~~tV~~lK~~i~~-~~gip~~~q~l~~~--g~~L~d~~tL~~~~I~~~~~i~l 449 (457)
.|+|+|++..|+.+ .+ +|+|++||++||++|++ +.|+||++|||+|. |+.|+|+.||++|||++|++|++
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 58999999988765 58 99999999999999999 48999999999987 99999999999999999999876
No 152
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.43 E-value=5.4e-13 Score=104.49 Aligned_cols=79 Identities=16% Similarity=0.384 Sum_probs=73.3
Q ss_pred cCceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
...|+|.|++.+|+.+.++|.+++++..|+..++++.|+|+++++|+|+|+.|.++.|+++|++++|++|++.++++||
T Consensus 15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 93 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93 (93)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence 3568899999999999999999999999999999999999999999999999999999999999999999999999998
No 153
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.42 E-value=2.1e-13 Score=129.21 Aligned_cols=74 Identities=96% Similarity=1.299 Sum_probs=69.8
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEec
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~ 74 (457)
|+|+|++++|++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++++++
T Consensus 234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999998753
No 154
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.41 E-value=1.2e-13 Score=109.05 Aligned_cols=72 Identities=18% Similarity=0.319 Sum_probs=65.6
Q ss_pred CceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEe
Q 012759 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r 452 (457)
..|+|+|+ ..|+++.++|++++||.+||++|++.+|+|+++|+|+|.|+.| |+.+|++|+|+++++|+|...
T Consensus 16 ~~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~~ 87 (95)
T 1v86_A 16 ELVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVGS 87 (95)
T ss_dssp CCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECCS
T ss_pred ceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEec
Confidence 45788898 4688999999999999999999999999999999999999999 455999999999999998754
No 155
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.41 E-value=3.7e-13 Score=103.74 Aligned_cols=67 Identities=18% Similarity=0.265 Sum_probs=60.9
Q ss_pred ccCceEEEeecCCChHHHHHHHHhhhhCCCCCceEEEE-------CCeecCCCCCccccCCCcCcEEEEEEEec
Q 012759 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (457)
Q Consensus 160 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~-------~g~~L~d~~tL~~y~I~~~~~i~l~~~~~ 226 (457)
.+.+.+...+++++||++||++|+.++|+|+++|||+| .|+.|+|+++|++|+|++|++|||+.+.|
T Consensus 12 ~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~~P 85 (86)
T 4b6w_A 12 SRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDLQP 85 (86)
T ss_dssp CSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred CCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeCCC
Confidence 45566789999999999999999999999999999996 58899999999999999999999987543
No 156
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.40 E-value=3.9e-13 Score=105.66 Aligned_cols=72 Identities=24% Similarity=0.433 Sum_probs=66.7
Q ss_pred CeEEEEcCCCcEEEEEecCC-----CcHHHHHHHHhhhcCCCCccceEeeccEEccC-CCcccccccccccceeEEEEe
Q 012759 1 MQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~-----dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~-~~tl~~y~i~~~sti~l~~~~ 73 (457)
|+|+|++ .|++++++|.++ +||.+||++|+++.|+|+++|+|+|.|+.|+| +.+|.+|+|.+++++|++.+.
T Consensus 8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~~ 85 (92)
T 1wxv_A 8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKK 85 (92)
T ss_dssp EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCC
T ss_pred EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEecC
Confidence 6899999 589999999995 99999999999999999999999999999988 568999999999999997654
No 157
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.39 E-value=2e-13 Score=107.75 Aligned_cols=70 Identities=21% Similarity=0.378 Sum_probs=64.7
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEE
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~ 72 (457)
|+|+|+ .+|++++++|.+++||.+||++|+++.|+|+++|+|+|.|+.|+| .+|++|+|.+++++||+..
T Consensus 18 ~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd-~tL~~~~i~~g~~i~lv~~ 87 (95)
T 1v86_A 18 VDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPED-KTLREIKVTSGAKIMVVGS 87 (95)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSS-SBHHHHCCCTTEEEEECCS
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCCc-CcHHHCCCCCCCEEEEEec
Confidence 678898 579999999999999999999999999999999999999999954 5999999999999998754
No 158
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.39 E-value=4.2e-13 Score=105.71 Aligned_cols=70 Identities=16% Similarity=0.203 Sum_probs=62.0
Q ss_pred eEEEEcCCC--cEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccE---E----ccCCCcccccccccccceeEEE
Q 012759 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK---Q----LEDGRTLADYNIQKESTLHLVL 71 (457)
Q Consensus 2 ~i~~~~~~g--~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~---~----L~~~~tl~~y~i~~~sti~l~~ 71 (457)
.++|...+. ++++++|++++||.+||+||++++|||+++|+|+|+|+ . ++|+++|.+|+|.+++++|++-
T Consensus 16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd 94 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIID 94 (97)
T ss_dssp EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEE
T ss_pred EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEe
Confidence 467776554 58999999999999999999999999999999999983 3 4899999999999999999875
No 159
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.39 E-value=6.2e-13 Score=104.71 Aligned_cols=72 Identities=15% Similarity=0.205 Sum_probs=61.9
Q ss_pred ceeeEEEcCCC--CEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECC---eE----cCCCCcccccCCCCCCEEEEE
Q 012759 380 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 380 ~~~i~v~~~~g--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g---~~----L~d~~tL~~~~I~~~~~i~l~ 450 (457)
.+.++|..... +.+++++++++||++||++|+.++||||++|||+|.| +. ++|+.+|++|||++|++|+|+
T Consensus 14 ~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlv 93 (97)
T 2kj6_A 14 SVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHII 93 (97)
T ss_dssp CEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEE
T ss_pred eEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEE
Confidence 35666665433 4789999999999999999999999999999999987 33 488999999999999999986
Q ss_pred E
Q 012759 451 L 451 (457)
Q Consensus 451 ~ 451 (457)
-
T Consensus 94 d 94 (97)
T 2kj6_A 94 D 94 (97)
T ss_dssp E
T ss_pred e
Confidence 3
No 160
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.38 E-value=8.2e-13 Score=105.25 Aligned_cols=79 Identities=15% Similarity=0.340 Sum_probs=76.2
Q ss_pred CceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 012759 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG~ 457 (457)
..|+|.|++.+|+.+.++|.+++++..|+..++++.|+|+++++|+|+|+.|.++.|+++|++++|++|++.++++||.
T Consensus 23 ~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG~ 101 (104)
T 1wz0_A 23 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSGP 101 (104)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCCS
T ss_pred CeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 5688999999999999999999999999999999999999999999999999999999999999999999999999994
No 161
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.38 E-value=7.8e-13 Score=103.69 Aligned_cols=76 Identities=17% Similarity=0.403 Sum_probs=73.3
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|++.+|+.+.+.|.+++++..|+++++++.|+|+++|+|+|+|++|.++.|+++|+++++++|+++++.+++
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999987765
No 162
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.38 E-value=4.6e-13 Score=130.66 Aligned_cols=78 Identities=31% Similarity=0.572 Sum_probs=74.3
Q ss_pred CceeeEEEcCCCCEEEEEecCCchHHHHHHHHhh---hcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEE-EEEEecC
Q 012759 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRLR 454 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~---~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i-~l~~r~~ 454 (457)
..|+|+|++.+|+++.++|++++||.+||.+|++ ++|||+++|+|+|+|+.|+|+++|++|||++|++| +++.|.+
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~ 85 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK 85 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCC
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCC
Confidence 5799999999999999999999999999999999 67899999999999999999999999999999998 8999988
Q ss_pred CC
Q 012759 455 GG 456 (457)
Q Consensus 455 GG 456 (457)
||
T Consensus 86 ~~ 87 (368)
T 1oqy_A 86 AG 87 (368)
T ss_dssp SS
T ss_pred CC
Confidence 86
No 163
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.37 E-value=1.6e-12 Score=103.62 Aligned_cols=77 Identities=13% Similarity=0.320 Sum_probs=71.9
Q ss_pred CceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
..|+|.|++ +|+...++|.+++++..|+...+++.|+++++++|+|+|+.|.++.|.++|++++|++|++.++++||
T Consensus 30 ~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG 106 (106)
T 2eke_C 30 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 106 (106)
T ss_dssp SEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence 458899999 99999999999999999999999999999999999999999999999999999999999999999998
No 164
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.36 E-value=5.9e-13 Score=129.89 Aligned_cols=75 Identities=31% Similarity=0.561 Sum_probs=70.4
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhh---hcCCCCccceEeeccEEccCCCcccccccccccce-eEEEEecC
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRLRG 75 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~---~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti-~l~~~~~~ 75 (457)
|+|+|++++|++++++|.+++||.+||.+|++ +.|+|+++|+|+|.|+.|+|+++|.+|+|.+++++ |++.+.++
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~~ 86 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKA 86 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCCS
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCCC
Confidence 89999999999999999999999999999999 67899999999999999999999999999999998 77766553
No 165
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.34 E-value=8.1e-13 Score=106.67 Aligned_cols=71 Identities=21% Similarity=0.276 Sum_probs=65.8
Q ss_pred CeEEEEcCCCcEEEEEec-CCCcHHHHHHHHhhhcCCCCccceEeeccE-----------E----ccCCCcccccccccc
Q 012759 1 MQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQKE 64 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~-~~dtv~~ik~ki~~~~gip~~~q~l~~~g~-----------~----L~~~~tl~~y~i~~~ 64 (457)
|+|+|++.+|+. .++|+ +++||.+||++|+++.|+|+++|+|+|+|+ . ++|+.+|++|+|.++
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G 86 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG 86 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence 789999999966 79999 999999999999999999999999999988 4 588999999999999
Q ss_pred cceeEEEE
Q 012759 65 STLHLVLR 72 (457)
Q Consensus 65 sti~l~~~ 72 (457)
+++|++..
T Consensus 87 ~~L~l~~~ 94 (107)
T 1wf9_A 87 SMVYLAYE 94 (107)
T ss_dssp CEEECCCS
T ss_pred CEEEEEeC
Confidence 99998754
No 166
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.33 E-value=2.3e-12 Score=101.74 Aligned_cols=71 Identities=20% Similarity=0.279 Sum_probs=61.7
Q ss_pred eeeEEEcCCCC-EEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECC---eE----cCCCCcccccCCCCCCEEEEEE
Q 012759 381 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 381 ~~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g---~~----L~d~~tL~~~~I~~~~~i~l~~ 451 (457)
+.|+|+..... .+.+++++++||++||++|+.++|+|+++|||+|.| +. ++|+.+|++|||++|++|+|.-
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 56777765442 689999999999999999999999999999999976 54 4899999999999999999864
No 167
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.32 E-value=1e-12 Score=106.01 Aligned_cols=72 Identities=22% Similarity=0.303 Sum_probs=65.7
Q ss_pred ceeeEEEcCCCCEEEEEec-CCchHHHHHHHHhhhcCCCCCCeEEEECCe-----------E----cCCCCcccccCCCC
Q 012759 380 GMQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQK 443 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~-~~~tV~~lK~~i~~~~gip~~~q~l~~~g~-----------~----L~d~~tL~~~~I~~ 443 (457)
.|.|+|++.+|+. .++|+ +++||.+||++|++++|+|+++|+|+|.|+ . ++|+.+|++|||++
T Consensus 7 ~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~ 85 (107)
T 1wf9_A 7 GTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAH 85 (107)
T ss_dssp CEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCT
T ss_pred eEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCC
Confidence 4899999999964 79999 999999999999999999999999999988 4 57889999999999
Q ss_pred CCEEEEEEe
Q 012759 444 ESTLHLVLR 452 (457)
Q Consensus 444 ~~~i~l~~r 452 (457)
|++|+|...
T Consensus 86 G~~L~l~~~ 94 (107)
T 1wf9_A 86 GSMVYLAYE 94 (107)
T ss_dssp TCEEECCCS
T ss_pred CCEEEEEeC
Confidence 999998753
No 168
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.32 E-value=1.6e-12 Score=104.37 Aligned_cols=79 Identities=15% Similarity=0.388 Sum_probs=76.3
Q ss_pred cCceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
+..|+|.|++.+|+.+.++|.+++++..|+...+++.|+|+++++|+|+|+.|.++.|+++|++++|++|++.++++||
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg 102 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGG 102 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCc
Confidence 3568999999999999999999999999999999999999999999999999999999999999999999999999999
No 169
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.29 E-value=4.7e-12 Score=99.95 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=61.4
Q ss_pred eEEEEcCCCc-EEEEEecCCCcHHHHHHHHhhhcCCCCccceEeecc---EE----ccCCCcccccccccccceeEEE
Q 012759 2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL 71 (457)
Q Consensus 2 ~i~~~~~~g~-~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g---~~----L~~~~tl~~y~i~~~sti~l~~ 71 (457)
.|+|+..++. .+++++.+++||.+||++|++++|+|+++|+|+|.| +. ++|+++|.+|+|.+++++|++-
T Consensus 9 ~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 9 MVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp EEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 4567665443 799999999999999999999999999999999987 43 5899999999999999999864
No 170
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.29 E-value=1.3e-11 Score=91.90 Aligned_cols=70 Identities=16% Similarity=0.384 Sum_probs=67.9
Q ss_pred eeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEE
Q 012759 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~ 450 (457)
|+|.|++.+|+...++|.+++++..|+.+.+++.|+|+++++|+|+|+.|.++.|+++|++++|++|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 6789999999999999999999999999999999999999999999999999999999999999999985
No 171
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.27 E-value=1.2e-11 Score=96.13 Aligned_cols=76 Identities=17% Similarity=0.403 Sum_probs=72.7
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|.|++.+|+.+.+.|.+++++..|+++.+++.|+|+++++|+|+|++|.++.|.++|++.++++|+++++..++
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg 81 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 81 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999887654
No 172
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.24 E-value=1.9e-11 Score=101.05 Aligned_cols=72 Identities=15% Similarity=0.266 Sum_probs=62.8
Q ss_pred ceeeEEEcCCCC-EEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECC---e---Ec-CCCCcccccCCCCCCEEEEEE
Q 012759 380 GMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---K---QL-EDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 380 ~~~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g---~---~L-~d~~tL~~~~I~~~~~i~l~~ 451 (457)
.+.|+|+...+. .+.+++++++||++||.+|+..+|||+++|||+|.| + .| +|+.+|++|||++|++|||..
T Consensus 6 ~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd 85 (122)
T 1t0y_A 6 VYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVD 85 (122)
T ss_dssp EEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEE
T ss_pred EEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEe
Confidence 467777765442 688999999999999999999999999999999977 4 34 788999999999999999875
No 173
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.23 E-value=1.5e-11 Score=101.67 Aligned_cols=71 Identities=14% Similarity=0.252 Sum_probs=62.8
Q ss_pred eEEEEcCCCc-EEEEEecCCCcHHHHHHHHhhhcCCCCccceEeecc---E---E-ccCCCcccccccccccceeEEEE
Q 012759 2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---K---Q-LEDGRTLADYNIQKESTLHLVLR 72 (457)
Q Consensus 2 ~i~~~~~~g~-~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g---~---~-L~~~~tl~~y~i~~~sti~l~~~ 72 (457)
.|+|+..++. .+++++.+++||.+||.+|+++.|+|+++|+|+|.| + + ++|+++|.+|+|.++++||++..
T Consensus 8 ~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~ 86 (122)
T 1t0y_A 8 DLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV 86 (122)
T ss_dssp EEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred EEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeC
Confidence 5677776553 789999999999999999999999999999999987 3 3 48899999999999999999873
No 174
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.23 E-value=8.6e-12 Score=96.51 Aligned_cols=71 Identities=24% Similarity=0.343 Sum_probs=63.3
Q ss_pred eeeEEEcCCCCEEEEE-ecCCchHHHHHHHHhhhcCCCCCCeEEEEC--CeEcC---CCCcccccCCCCCCEEEEEEe
Q 012759 381 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~-v~~~~tV~~lK~~i~~~~gip~~~q~l~~~--g~~L~---d~~tL~~~~I~~~~~i~l~~r 452 (457)
|+|+|+..+|+ +.++ +++++||++||+.|++++|+|++.|+|.|+ ++.|+ |+.+|++|||.+|++|+|.-.
T Consensus 1 m~i~vr~~~G~-~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGT-HLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEE-EEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCC-EEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 78999999996 4577 999999999999999999999999999997 47874 678999999999999998643
No 175
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.22 E-value=5e-11 Score=90.33 Aligned_cols=73 Identities=10% Similarity=0.254 Sum_probs=69.3
Q ss_pred cCceeeEEEcCCCC-EEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEE
Q 012759 378 RGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 378 ~~~~~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~ 450 (457)
+..|+|.|++.+|+ .+.++|.+++++..|+...+++.|+++++++|+|+|+.|.++.|+++|++++|++|++.
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 35689999999996 89999999999999999999999999999999999999999999999999999999985
No 176
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.22 E-value=2.5e-11 Score=90.41 Aligned_cols=70 Identities=16% Similarity=0.384 Sum_probs=67.9
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEE
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~ 70 (457)
|+|.|++.+|+.+.+.|.+++++..|+++.+++.|+|+++++|+|+|++|.++.|.++|++.++++|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999999975
No 177
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.20 E-value=3.9e-11 Score=93.87 Aligned_cols=75 Identities=16% Similarity=0.379 Sum_probs=70.7
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecC
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~ 75 (457)
|+|.|++.+|+.+.+.|.+++++..|+++++++.|+|++.++|+|+|+.|.++.|+++|++.++++|+++++..+
T Consensus 18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~G 92 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 92 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC--
T ss_pred EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999987665
No 178
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.17 E-value=2.5e-11 Score=93.90 Aligned_cols=70 Identities=24% Similarity=0.377 Sum_probs=63.3
Q ss_pred CeEEEEcCCCcEEEEE-ecCCCcHHHHHHHHhhhcCCCCccceEeec--cEEcc---CCCcccccccccccceeEEE
Q 012759 1 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVL 71 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~-v~~~dtv~~ik~ki~~~~gip~~~q~l~~~--g~~L~---~~~tl~~y~i~~~sti~l~~ 71 (457)
|+|+|++.+|+.. ++ +.+++||.+||++|+++.|+|+++|+|.|+ ++.|+ ++.+|++|++.+++++|+.-
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence 8999999999754 77 999999999999999999999999999997 47774 68899999999999999854
No 179
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.14 E-value=5.2e-11 Score=94.81 Aligned_cols=76 Identities=16% Similarity=0.376 Sum_probs=72.3
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|.|++.+|+.+.+.|.+++++..|+.+++++.|+|++.++|+|+|+.|.++.|+++|++.++++|+++++..++
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 100 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSG 100 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCC
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999998876653
No 180
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.13 E-value=1.3e-10 Score=88.01 Aligned_cols=70 Identities=10% Similarity=0.274 Sum_probs=67.2
Q ss_pred CeEEEEcCCCc-EEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEE
Q 012759 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (457)
Q Consensus 1 ~~i~~~~~~g~-~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~ 70 (457)
|+|.|++.+|+ .+.+.|.+++++..|+++.+++.|+|+++++|+|+|++|.++.|.++|++.++++|++.
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 68999999996 99999999999999999999999999999999999999999999999999999999874
No 181
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.13 E-value=4.6e-11 Score=95.88 Aligned_cols=77 Identities=16% Similarity=0.428 Sum_probs=73.3
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCce
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 77 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~~ 77 (457)
|+|.|++.+|+.+.+.|.+++++..|+++.+++.|+|+++++|+|+|++|.++.|+++|++.++++|++++...+++
T Consensus 27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~ 103 (110)
T 2k8h_A 27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGL 103 (110)
T ss_dssp EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC-
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCcc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999887764
No 182
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.12 E-value=1.1e-10 Score=92.88 Aligned_cols=74 Identities=12% Similarity=0.314 Sum_probs=69.8
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEEEEecC
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~ 75 (457)
|+|.|++ +|+.+.+.|.+++++..|+++.+++.|+|+++++|+|+|++|.++.|.++|++.++++|+++++..+
T Consensus 32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~G 105 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 105 (106)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC--
T ss_pred EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeeccc
Confidence 6899999 9999999999999999999999999999999999999999999999999999999999999987655
No 183
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.10 E-value=1e-10 Score=112.58 Aligned_cols=70 Identities=23% Similarity=0.478 Sum_probs=65.0
Q ss_pred eeeEEEeeCCcEEEEEeecCccHHHHHHHhhhhcCCCCCCceEE---ecCeeccCCCcccccccccCceEEEEE
Q 012759 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVL 375 (457)
Q Consensus 305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~---~~g~~L~d~~~l~~~~i~~~~~l~l~~ 375 (457)
++|+|| |+|+++++++++++||.+||++|++++|||+++|+|+ ++|+.|+|+.+|++|+|.+|++++|+-
T Consensus 6 i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~g 78 (320)
T 3shq_A 6 VVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVG 78 (320)
T ss_dssp EEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEEC
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEc
Confidence 578898 8999999999999999999999999999999999999 789999999999999999999999974
No 184
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.08 E-value=8.6e-11 Score=113.03 Aligned_cols=75 Identities=21% Similarity=0.440 Sum_probs=67.5
Q ss_pred ceEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEE---ecCcccCCCCcccccccccCCcceEEEEeec
Q 012759 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (457)
Q Consensus 76 ~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~---~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~~ 151 (457)
.|.|+|| .+|+.+.++|++++||++||++|++++|+||++|+|+ |+|+.|+|+.+|++|+|++|++|+|+.....
T Consensus 5 ~i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~~ 82 (320)
T 3shq_A 5 EVVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTEA 82 (320)
T ss_dssp EEEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC-
T ss_pred eEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccchh
Confidence 4788898 5899999999999999999999999999999999999 8999999999999999999999999876544
No 185
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.02 E-value=1.7e-09 Score=86.77 Aligned_cols=77 Identities=17% Similarity=0.385 Sum_probs=73.5
Q ss_pred CceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCC
Q 012759 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 455 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~G 455 (457)
..++|.|++.+|+...+.|.+++++..|+...+++.|++++.++++|+|..|.++.|.+++++++|++|++..+..|
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~G 115 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQCG 115 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCCC
T ss_pred CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999998876
No 186
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.01 E-value=1.1e-09 Score=86.69 Aligned_cols=72 Identities=17% Similarity=0.228 Sum_probs=61.4
Q ss_pred ceeeEEEc---CCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECC-------eEc-CCCCcccccCCCCCCEEE
Q 012759 380 GMQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-------KQL-EDGRTLADYNIQKESTLH 448 (457)
Q Consensus 380 ~~~i~v~~---~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g-------~~L-~d~~tL~~~~I~~~~~i~ 448 (457)
.+.|+|++ .+|+.+...+++++||++||.+|+..+|+|+..|+|+|.+ ..| +|+.+|++|||++|++|+
T Consensus 9 ~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~ 88 (97)
T 1wjn_A 9 LLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLL 88 (97)
T ss_dssp EEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEE
T ss_pred cEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEE
Confidence 35566664 4677899999999999999999999999999999999873 235 467799999999999999
Q ss_pred EEE
Q 012759 449 LVL 451 (457)
Q Consensus 449 l~~ 451 (457)
|..
T Consensus 89 V~d 91 (97)
T 1wjn_A 89 VRW 91 (97)
T ss_dssp EEC
T ss_pred EEe
Confidence 875
No 187
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=98.97 E-value=9e-07 Score=91.09 Aligned_cols=346 Identities=12% Similarity=0.176 Sum_probs=223.9
Q ss_pred EEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEec-Ccc-------c-C----CCCcccccccccCCcceEEEEe------
Q 012759 89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQ-------L-E----DGRTLADYNIQKESTLHLVLRL------ 149 (457)
Q Consensus 89 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~-g~~-------L-~----d~~tl~~y~i~~~s~i~l~~~~------ 149 (457)
..+.|..+.|+.++|+.+++..|+|+++|||..- .++ + + .+.++.++. ..++.+.+.+..
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~-~~~~~~~lflE~~~~~~~ 116 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELS-DNENPWTIFLETVDPELA 116 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHH-TSCSSEEEEEEECCHHHH
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHh-ccCCceEEEEEecccccC
Confidence 4678999999999999999999999999998632 111 1 1 122333331 123334443321
Q ss_pred -----------ecceeeeEeecc--CceEE----EeecCCChHHHHHHHHhhhhCCCCCceEEEEC------CeecC-CC
Q 012759 150 -----------RGGMQIFVKTLT--GKTIT----LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA------GKQLE-DG 205 (457)
Q Consensus 150 -----------~~~~~i~vk~~~--g~~~~----~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~------g~~L~-d~ 205 (457)
...+.|++|..+ .+++. +.|+..++|.++-..|.+..|+|++.-..+|. -..|+ .+
T Consensus 117 ~~~~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~ 196 (530)
T 2ylm_A 117 ASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYD 196 (530)
T ss_dssp TTTCCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSS
T ss_pred CccccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEccccc
Confidence 013678888765 34443 56889999999999999999999987666654 24466 57
Q ss_pred CCcccc--CCCcCcEEEEEEEec-C-----------------CeeEEEEc---cCCceEEEEeeCCccHHHHHHHHhhhc
Q 012759 206 RTLADY--NIQKESTLHLVLRLR-G-----------------GMQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKE 262 (457)
Q Consensus 206 ~tL~~y--~I~~~~~i~l~~~~~-~-----------------~~~i~V~~---~~g~~~~~~v~~~~tV~~lK~~I~~~~ 262 (457)
.|+.+. .+.+|+.|.+-.... . .+.|.+.. .+...+.++++...|-.+|.+.+.++.
T Consensus 197 ~t~~~~~~eL~~GdII~fQ~~~~~~~~~~y~~v~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~~l 276 (530)
T 2ylm_A 197 VSLDKALDELMDGDIIVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRL 276 (530)
T ss_dssp SBHHHHSTTCCTTEEEEEEECCGGGGGSSSCSHHHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHHHH
T ss_pred ccHHHHHhcccCCCEEEEEecCCccccccCCCHHHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHHHh
Confidence 899999 999999986555432 1 13343442 346679999999999999999999999
Q ss_pred CCCCCCeEEEeC----Ccc-----cCCCcccccccc----CCCCeEEEEEe--------ecCceeeEEEeeCC--cEEEE
Q 012759 263 GIPPDQQRLIFA----GKQ-----LEDGRTLADYNI----QKESTLHLVLR--------LRGGMQIFVKTLTG--KTITL 319 (457)
Q Consensus 263 ~ip~~~q~L~~~----g~~-----L~d~~tl~~~~i----~~~~tl~l~~~--------~~~~~~i~i~~~~g--~~~~l 319 (457)
+++|..-||.-. |.. ...+.+|.+.=- ...+.+++..- ....+.|+.-..+. ..+.+
T Consensus 277 ~~dP~~lRf~~~~~~~~~p~~~i~~~~~~~L~d~l~~~~~~~~~~l~YevL~ipl~ElE~~r~~kv~w~~~~~~~~~~~l 356 (530)
T 2ylm_A 277 NTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFENRRSFKCIWLNSQFREEEITL 356 (530)
T ss_dssp TSCGGGEEEECCCTTSCSCCSBCCTTCCSCHHHHSTTSCSSSCCEEEEEECSSCHHHHHSBCCEEEEEECTTSCEEEEEE
T ss_pred CCCchhEEEEecccccCCCCCccccCCCCcHHHHhhcccCCCCCeEEEEECCCCHHHHhhCceEEEEEECCCCceEEEEE
Confidence 999998877622 221 222344432211 11244544321 01223343322211 36778
Q ss_pred EeecCccHHHHHHHhhhhcCCCC---CCceEE--ecCe---eccCCCcccccccccCceEEEEEEec--------Cceee
Q 012759 320 EVESSDTIDNVKAKIQDKEGIPP---DQQRLI--FAGK---QLEDGRTLADYNIQKESTLHLVLRLR--------GGMQI 383 (457)
Q Consensus 320 ~v~~~~Tv~~lK~~I~~~~~ip~---~~q~l~--~~g~---~L~d~~~l~~~~i~~~~~l~l~~~~~--------~~~~i 383 (457)
.++.+.||.||-+.+..+.+++. .+.++. ++++ +++++.++...+=....++++..-+. ..+-|
T Consensus 357 ~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~rieeip~ee~~~~~~~~~li 436 (530)
T 2ylm_A 357 YPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKENEMLV 436 (530)
T ss_dssp CCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEEEEEECCGGGSSCCTTTEEEE
T ss_pred EcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccccccccceEEEEECCHHHhccCCCCcEEE
Confidence 89999999999999999999974 444444 5554 46777777766432244555432111 12233
Q ss_pred EEEc-------CCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCe---E--EEECC--eEcCCCCc
Q 012759 384 FVKT-------LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ---R--LIFAG--KQLEDGRT 435 (457)
Q Consensus 384 ~v~~-------~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q---~--l~~~g--~~L~d~~t 435 (457)
.|-. .-|..+.+.|.+++|+.++|++|.+++|++...+ + ++-.+ ..++|+..
T Consensus 437 ~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv~~keF~K~Kfa~v~~~~~~yl~d~d~ 502 (530)
T 2ylm_A 437 TVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEY 502 (530)
T ss_dssp EEEEESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHCCCHHHHTTCEEEEEETTEEEECCTTTC
T ss_pred EEEEeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhCCCHhhhhhEEEEEEECCcccccCCccc
Confidence 3321 1266788999999999999999999999996533 3 33334 45777543
No 188
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.93 E-value=3.1e-09 Score=94.04 Aligned_cols=78 Identities=13% Similarity=0.276 Sum_probs=73.5
Q ss_pred CceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 012759 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG~ 457 (457)
.-++|.|+ .+|+...+++.+++++..|+...+++.|+|++++|++|+|++|.++.|.+++++++|++|++..+++||.
T Consensus 28 ~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~ 105 (200)
T 3pge_A 28 THINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGG 105 (200)
T ss_dssp CCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC
T ss_pred CeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCc
Confidence 34778887 4899999999999999999999999999999999999999999999999999999999999999999994
No 189
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.91 E-value=2.3e-09 Score=92.51 Aligned_cols=78 Identities=12% Similarity=0.287 Sum_probs=73.5
Q ss_pred CceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 012759 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG~ 457 (457)
..++|.|+ .+|+...++|.+++++..|+...+++.|+++.+++++|+|+.|.++.|.+++++++|++|++..+++||.
T Consensus 56 e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG~ 133 (207)
T 3tix_A 56 THINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGL 133 (207)
T ss_dssp CEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTTG
T ss_pred CcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 45778887 4889999999999999999999999999999999999999999999999999999999999999999993
No 190
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.82 E-value=9.3e-09 Score=81.21 Aligned_cols=73 Identities=16% Similarity=0.234 Sum_probs=62.1
Q ss_pred ceEEEEEc---cCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEecCc-------cc-CCCCcccccccccCCcce
Q 012759 76 GMQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-------QL-EDGRTLADYNIQKESTLH 144 (457)
Q Consensus 76 ~~~i~vk~---~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~-------~L-~d~~tl~~y~i~~~s~i~ 144 (457)
.+.|+|+. .+|..+...++++.||++||.+|+..+|+|+..|+|+|.+. .| +|.++|.+|++.+|++||
T Consensus 9 ~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~ 88 (97)
T 1wjn_A 9 LLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLL 88 (97)
T ss_dssp EEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEE
T ss_pred cEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEE
Confidence 35566654 46788999999999999999999999999999999998731 24 688999999999999999
Q ss_pred EEEE
Q 012759 145 LVLR 148 (457)
Q Consensus 145 l~~~ 148 (457)
+...
T Consensus 89 V~d~ 92 (97)
T 1wjn_A 89 VRWS 92 (97)
T ss_dssp EECC
T ss_pred EEec
Confidence 9763
No 191
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.79 E-value=6.8e-10 Score=97.08 Aligned_cols=80 Identities=13% Similarity=0.297 Sum_probs=1.5
Q ss_pred ecCceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 377 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 377 ~~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
++..|+|.| ..+|+...++|.+++++..|+...+++.|++++++|+.|+|+++.++.|.+++++++|++|++..+++||
T Consensus 18 p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG 96 (227)
T 3v7o_A 18 PETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (227)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred CCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCC
Confidence 345688888 7789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 012759 457 F 457 (457)
Q Consensus 457 ~ 457 (457)
+
T Consensus 97 ~ 97 (227)
T 3v7o_A 97 L 97 (227)
T ss_dssp C
T ss_pred c
Confidence 5
No 192
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=98.73 E-value=1.2e-05 Score=82.67 Aligned_cols=331 Identities=13% Similarity=0.170 Sum_probs=214.9
Q ss_pred cEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEE--------ccC-----CCcccccccccccceeEEEEe----
Q 012759 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ--------LED-----GRTLADYNIQKESTLHLVLRL---- 73 (457)
Q Consensus 11 ~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~--------L~~-----~~tl~~y~i~~~sti~l~~~~---- 73 (457)
...+++|....|+.++|+.|++..|+|+++|||+.-... +.+ +.++.++. ...+.+.+.+..
T Consensus 36 ~~~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~-~~~~~~~lflE~~~~~ 114 (530)
T 2ylm_A 36 KYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELS-DNENPWTIFLETVDPE 114 (530)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHH-TSCSSEEEEEEECCHH
T ss_pred CcceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHh-ccCCceEEEEEecccc
Confidence 445789999999999999999999999999999863221 111 11222221 123334444421
Q ss_pred -------------cCceEEEEEccC--CcEEE----EEEcCCCCHHHHHHHHhhhhCCCCCCeEEEec------CcccC-
Q 012759 74 -------------RGGMQIFVKTLT--GKTIT----LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA------GKQLE- 127 (457)
Q Consensus 74 -------------~~~~~i~vk~~~--g~~~~----l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~------g~~L~- 127 (457)
.+.+-||+|..+ .+++. +-|+.+++|.++-..|.++.|+|++.-..+|. ...|+
T Consensus 115 ~~~~~~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~ 194 (530)
T 2ylm_A 115 LAASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQD 194 (530)
T ss_dssp HHTTTCCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCC
T ss_pred cCCccccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEccc
Confidence 124788888654 33332 67899999999999999999999988777665 24466
Q ss_pred CCCccccc--ccccCCcceEEEEee------------------cceeeeEee---ccCceEEEeecCCChHHHHHHHHhh
Q 012759 128 DGRTLADY--NIQKESTLHLVLRLR------------------GGMQIFVKT---LTGKTITLEVESSDTIDNVKAKIQD 184 (457)
Q Consensus 128 d~~tl~~y--~i~~~s~i~l~~~~~------------------~~~~i~vk~---~~g~~~~~~v~~~~tV~~lK~~i~~ 184 (457)
.+.|+.+. ++.+|+.|..-.... ..+.|.++. .+...+.++++...|-.++-++|.+
T Consensus 195 ~~~t~~~~~~eL~~GdII~fQ~~~~~~~~~~y~~v~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~ 274 (530)
T 2ylm_A 195 YDVSLDKALDELMDGDIIVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQ 274 (530)
T ss_dssp SSSBHHHHSTTCCTTEEEEEEECCGGGGGSSSCSHHHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHH
T ss_pred ccccHHHHHhcccCCCEEEEEecCCccccccCCCHHHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHH
Confidence 57899999 999999887665432 123444443 2356799999999999999999999
Q ss_pred hhCCCCCceEEEEC----Ce---e--cCCCCCccccCC----CcCcEEEEEEEec---------CCeeEEEEccCC--ce
Q 012759 185 KEGIPPDQQRLIFA----GK---Q--LEDGRTLADYNI----QKESTLHLVLRLR---------GGMQIFVKTLTG--KT 240 (457)
Q Consensus 185 ~~gip~~~q~L~~~----g~---~--L~d~~tL~~y~I----~~~~~i~l~~~~~---------~~~~i~V~~~~g--~~ 240 (457)
+.++.++..||.-. |+ . ...+.+|.+.=. ..-..+..- .++ ..+.|+....+. ..
T Consensus 275 ~l~~dP~~lRf~~~~~~~~~p~~~i~~~~~~~L~d~l~~~~~~~~~~l~Ye-vL~ipl~ElE~~r~~kv~w~~~~~~~~~ 353 (530)
T 2ylm_A 275 RLNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQ-QLKMKITDFENRRSFKCIWLNSQFREEE 353 (530)
T ss_dssp HHTSCGGGEEEECCCTTSCSCCSBCCTTCCSCHHHHSTTSCSSSCCEEEEE-ECSSCHHHHHSBCCEEEEEECTTSCEEE
T ss_pred HhCCCchhEEEEecccccCCCCCccccCCCCcHHHHhhcccCCCCCeEEEE-ECCCCHHHHhhCceEEEEEECCCCceEE
Confidence 99999988877521 21 1 122344433211 111223221 121 123443333222 26
Q ss_pred EEEEeeCCccHHHHHHHHhhhcCCCC---CCeEEE--eCCc---ccCCCccccccccCCCCeEEEEEeec--------Cc
Q 012759 241 ITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLI--FAGK---QLEDGRTLADYNIQKESTLHLVLRLR--------GG 304 (457)
Q Consensus 241 ~~~~v~~~~tV~~lK~~I~~~~~ip~---~~q~L~--~~g~---~L~d~~tl~~~~i~~~~tl~l~~~~~--------~~ 304 (457)
+.+-+..+.||++|-+.+..+.+++. ...++. ++++ .+.++.++...+=....++++.--.. ..
T Consensus 354 ~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~rieeip~ee~~~~~~~~ 433 (530)
T 2ylm_A 354 ITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKENE 433 (530)
T ss_dssp EEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEEEEEECCGGGSSCCTTTE
T ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccccccccceEEEEECCHHHhccCCCCc
Confidence 66778899999999999999999874 445554 4554 36667677654322244444322111 11
Q ss_pred eeeEEEe-------eCCcEEEEEeecCccHHHHHHHhhhhcCCCCC
Q 012759 305 MQIFVKT-------LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 343 (457)
Q Consensus 305 ~~i~i~~-------~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~ 343 (457)
+-|.|-. .-|..+.+.+.++.|+.++|++|++++|||..
T Consensus 434 ~li~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv~~k 479 (530)
T 2ylm_A 434 MLVTVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEK 479 (530)
T ss_dssp EEEEEEEESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHCCCHH
T ss_pred EEEEEEEeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhCCCHh
Confidence 2233321 24678889999999999999999999999975
No 193
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.66 E-value=1.1e-07 Score=76.19 Aligned_cols=73 Identities=16% Similarity=0.397 Sum_probs=68.3
Q ss_pred CeeEEEEccCCceEEEEeeCCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEEEe
Q 012759 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300 (457)
Q Consensus 228 ~~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~~ 300 (457)
.+.|.|+..+|+.+.+.|.+.+++..|+...+++.|+++.+++|+|.|+.+.++.|..++++.++++|+++..
T Consensus 40 ~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~ 112 (115)
T 3kyd_D 40 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 112 (115)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEEC
T ss_pred eEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEee
Confidence 3567788889999999999999999999999999999999999999999999999999999999999988754
No 194
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.62 E-value=2.8e-07 Score=66.96 Aligned_cols=70 Identities=16% Similarity=0.316 Sum_probs=62.5
Q ss_pred eeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCC-CeEEEECCeEcCCCCcccccCCCCCCEEEEEE
Q 012759 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 382 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~-~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~ 451 (457)
.+.++......+.+.|+++++|.+|...-+.+.|||++ ..+|.|.|..|.++.++++|++++|+.|.+.+
T Consensus 11 ~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 11 TLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 34455544445889999999999999999999999999 99999999999999999999999999999865
No 195
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.50 E-value=6.6e-08 Score=73.06 Aligned_cols=71 Identities=14% Similarity=0.221 Sum_probs=61.1
Q ss_pred CceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeE---c--CCCCcccccCCCCCCEEEEE
Q 012759 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ---L--EDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~---L--~d~~tL~~~~I~~~~~i~l~ 450 (457)
.+|.|.++..+| ++.+++++++|+.+|+.+|++.++++++.|.++++..+ | .++.+|+++||+.|++|++.
T Consensus 3 ~~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 3 ESIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CcEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 358899999988 68899999999999999999999999999888765554 3 47789999999999999874
No 196
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.45 E-value=9.3e-07 Score=78.19 Aligned_cols=99 Identities=11% Similarity=0.255 Sum_probs=79.7
Q ss_pred CCeeEEEEccCCceEEEEeeCCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEEEeecCc--
Q 012759 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG-- 304 (457)
Q Consensus 227 ~~~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~~~~~~-- 304 (457)
.-+.+.|+ .+|+.+.+.+++.+++..|+...+++.|+|+.+++|+|+|+.+.++.|..++++.++++|+++..+.++
T Consensus 28 ~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~k 106 (200)
T 3pge_A 28 THINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGGG 106 (200)
T ss_dssp CCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC-
T ss_pred CeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCcC
Confidence 34666776 489999999999999999999999999999999999999999999999999999999999999887554
Q ss_pred --eeeEEEeeCCcEEEEEeecCccH
Q 012759 305 --MQIFVKTLTGKTITLEVESSDTI 327 (457)
Q Consensus 305 --~~i~i~~~~g~~~~l~v~~~~Tv 327 (457)
+.+....-.| .-.+.+.+++.+
T Consensus 107 d~v~Fs~~GD~G-~~~i~l~~~~~~ 130 (200)
T 3pge_A 107 ETIKFVADGDIG-SGSVIIKPFVDM 130 (200)
T ss_dssp CCEEEEEECSSC-EEEEEECCBCCS
T ss_pred ceEEEEeeccCC-eEEEEEecCCCC
Confidence 3344443333 334445554433
No 197
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.39 E-value=6.3e-07 Score=77.39 Aligned_cols=76 Identities=12% Similarity=0.291 Sum_probs=69.9
Q ss_pred CeeEEEEccCCceEEEEeeCCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEEEeecCc
Q 012759 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304 (457)
Q Consensus 228 ~~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~~~~~~ 304 (457)
.+.|.|+ .+|..+.+.|++.+++..|+...+++.|+|+.+++|+|+|+.+.++.|..++++.++|+|+++..+.++
T Consensus 57 ~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG 132 (207)
T 3tix_A 57 HINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGG 132 (207)
T ss_dssp EEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTT
T ss_pred cEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 3566676 489999999999999999999999999999999999999999999999999999999999998877666
No 198
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.36 E-value=1.8e-06 Score=67.27 Aligned_cols=73 Identities=12% Similarity=0.273 Sum_probs=67.6
Q ss_pred cCceeeEEEcCCCC-EEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEE
Q 012759 378 RGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 378 ~~~~~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~ 450 (457)
+..+.|.|+..+|+ ...+.|.+++++..|....+++.|+++...++.|+|..|.++.|.+++++++|++|.+.
T Consensus 23 ~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 23 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp CSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 35577888888885 78999999999999999999999999999999999999999999999999999999875
No 199
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.33 E-value=6.6e-08 Score=92.90 Aligned_cols=79 Identities=13% Similarity=0.320 Sum_probs=0.7
Q ss_pred cCceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 012759 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG~ 457 (457)
...++|.|++ +|+...++|.+++++..|+...+++.|++++++++.|+|+.+.++.|.+++++++|++|++..+++|||
T Consensus 19 ~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~~ 97 (360)
T 3ix6_A 19 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGM 97 (360)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred CCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCchH
Confidence 3456778876 677889999999999999999999999999999999999999999999999999999999999999996
No 200
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.28 E-value=2.1e-06 Score=77.43 Aligned_cols=79 Identities=13% Similarity=0.302 Sum_probs=73.7
Q ss_pred cCceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 012759 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG~ 457 (457)
...+.|.|++ +|+...+++.+++++..|+...+++.|+|+++++++|+|+.+.++.|..+++++++++|.+...+.||.
T Consensus 19 ~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~Gg~ 97 (209)
T 3uf8_A 19 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGS 97 (209)
T ss_dssp CSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTTCC
T ss_pred CCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccccccc
Confidence 4557788887 778889999999999999999999999999999999999999999999999999999999999999983
No 201
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.23 E-value=1.4e-07 Score=82.51 Aligned_cols=83 Identities=12% Similarity=0.300 Sum_probs=1.2
Q ss_pred EEEecCceEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEecCcccCCCCcccccccccCCcceEEEEe
Q 012759 70 VLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (457)
Q Consensus 70 ~~~~~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~ 149 (457)
...+...|.|.| ..+|+.+.+.|.+++++..|++...++.|+|+++++++|+|+.+.++.|..++++.+|++|++....
T Consensus 15 ~~~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ 93 (227)
T 3v7o_A 15 EVKPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 93 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecc
Confidence 334456788888 7889999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ecce
Q 012759 150 RGGM 153 (457)
Q Consensus 150 ~~~~ 153 (457)
.||.
T Consensus 94 ~GG~ 97 (227)
T 3v7o_A 94 IGGL 97 (227)
T ss_dssp --CC
T ss_pred cCCc
Confidence 7774
No 202
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.21 E-value=3.5e-06 Score=64.76 Aligned_cols=55 Identities=18% Similarity=0.247 Sum_probs=45.8
Q ss_pred cCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEcc--CCCccccccc
Q 012759 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--DGRTLADYNI 61 (457)
Q Consensus 7 ~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~--~~~tl~~y~i 61 (457)
...+..+++.+.+.+||..+|++|++++|||+.+|+|+|.|+.|. .++.-..|.-
T Consensus 20 ~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~ 76 (94)
T 4efo_A 20 LQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPK 76 (94)
T ss_dssp TTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCC
T ss_pred cccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCC
Confidence 356789999999999999999999999999999999999998865 3333444433
No 203
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.12 E-value=1.5e-06 Score=65.54 Aligned_cols=71 Identities=14% Similarity=0.221 Sum_probs=58.8
Q ss_pred CceEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEecCcc---c--CCCCcccccccccCCcceEE
Q 012759 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ---L--EDGRTLADYNIQKESTLHLV 146 (457)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~---L--~d~~tl~~y~i~~~s~i~l~ 146 (457)
+.|.|.|++.+| .+.+++++++|+.+|+++|++..+++++.|.+.+.... | .++.+++++||++|+.|++.
T Consensus 3 ~~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 3 ESIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CcEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 347788888887 56678999999999999999999999999888765443 3 47889999999999998874
No 204
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.11 E-value=2.2e-05 Score=57.09 Aligned_cols=71 Identities=15% Similarity=0.323 Sum_probs=63.6
Q ss_pred eeeeEeeccCceEEEeecCCChHHHHHHHHhhhhCCCCC-ceEEEECCeecCCCCCccccCCCcCcEEEEEE
Q 012759 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223 (457)
Q Consensus 153 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~-~q~L~~~g~~L~d~~tL~~y~I~~~~~i~l~~ 223 (457)
+.+.++......+.+.+.++.+|.+|-+.-+.+.|||++ ..+|.|.|..|+.+.++++|.+.+++.|.+++
T Consensus 10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 344555666677999999999999999999999999999 89999999999999999999999999998764
No 205
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.06 E-value=1.3e-05 Score=61.65 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=41.0
Q ss_pred CCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcC
Q 012759 388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 431 (457)
Q Consensus 388 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~ 431 (457)
..+..+.+.+.+.+||..+|++|++.+|||+++|+|+|.|+.|.
T Consensus 21 ~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~ 64 (94)
T 4efo_A 21 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLV 64 (94)
T ss_dssp TTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEEC
T ss_pred ccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccc
Confidence 45778999999999999999999999999999999999998775
No 206
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.03 E-value=2.4e-05 Score=59.75 Aligned_cols=72 Identities=14% Similarity=0.276 Sum_probs=66.3
Q ss_pred CceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEE
Q 012759 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~ 451 (457)
..+.|.|+. .|....+.+..++....|....+++.|++++..|+.|+|..+.++.|.+++++++|++|.+..
T Consensus 20 ~~IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 20 RLFPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp CCEEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred CeEEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence 346778884 688899999999999999999999999999999999999999999999999999999998764
No 207
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=97.93 E-value=0.0004 Score=68.34 Aligned_cols=136 Identities=24% Similarity=0.346 Sum_probs=107.6
Q ss_pred CcEEEEEeecCccHHHHHHHhhhhcC----CCCCCceEEec------CeeccCCCcccccccccCceEEEEEEecCceee
Q 012759 314 GKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIFA------GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 383 (457)
Q Consensus 314 g~~~~l~v~~~~Tv~~lK~~I~~~~~----ip~~~q~l~~~------g~~L~d~~~l~~~~i~~~~~l~l~~~~~~~~~i 383 (457)
+-+.++.+++++||.|.-..|.++.. .+...--|.|. |.=|+++++|..|++.++..+.... ..+.+
T Consensus 12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~---~~~~~ 88 (371)
T 3ivf_A 12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRK---KQRPL 88 (371)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEE---CEEEE
T ss_pred ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccC---ceeEE
Confidence 67788999999999999999998864 34555567772 3348889999999999999888875 46788
Q ss_pred EEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCC-CeEEEECC---------eEcCCCCcccccCCCCCCEEEEEEe
Q 012759 384 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAG---------KQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 384 ~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~-~q~l~~~g---------~~L~d~~tL~~~~I~~~~~i~l~~r 452 (457)
.|..++|....+.+++.+|+.++-..|+++.|+... .+-|.+.. .-|+.++++.+.+.....++++..+
T Consensus 89 ~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~frvK 167 (371)
T 3ivf_A 89 KIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLLRRK 167 (371)
T ss_dssp EEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEEEEE
Confidence 999999999999999999999999999999998643 34555432 2445567788777777777766554
No 208
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.93 E-value=2.7e-05 Score=58.96 Aligned_cols=75 Identities=20% Similarity=0.239 Sum_probs=69.2
Q ss_pred CCeeEEEEccCCceEEEEeeCCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEEEee
Q 012759 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 301 (457)
Q Consensus 227 ~~~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~~~ 301 (457)
++|.|.|-..+|+..++.|.++.++.++-++.++++|++++++.|.|+++.++-+.+++--|+.+++.|.|+...
T Consensus 8 ~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s 82 (90)
T 2al3_A 8 GGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVS 82 (90)
T ss_dssp --CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSS
T ss_pred CccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEcc
Confidence 467888999999999999999999999999999999999999999999999999999999999999999887644
No 209
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=97.91 E-value=0.00054 Score=67.42 Aligned_cols=135 Identities=24% Similarity=0.345 Sum_probs=104.9
Q ss_pred CceEEEeecCCChHHHHHHHHhhhhC----CCCCceEEEE------CCeecCCCCCccccCCCcCcEEEEEEEecCCeeE
Q 012759 162 GKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 231 (457)
Q Consensus 162 g~~~~~~v~~~~tV~~lK~~i~~~~g----ip~~~q~L~~------~g~~L~d~~tL~~y~I~~~~~i~l~~~~~~~~~i 231 (457)
+.+-++.++++.||.++...|.++.. .+.+++-|.- .|+-|+++++|..|++.+++.+....+. +.+
T Consensus 12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~~~---~~~ 88 (371)
T 3ivf_A 12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRKKQ---RPL 88 (371)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEECE---EEE
T ss_pred ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccCce---eEE
Confidence 55667889999999999999988764 3567777765 3567999999999999999988776543 578
Q ss_pred EEEccCCceEEEEeeCCccHHHHHHHHhhhcCCCCCC-eEEEeCC---------cccCCCccccccccCCCCeEEEEE
Q 012759 232 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAG---------KQLEDGRTLADYNIQKESTLHLVL 299 (457)
Q Consensus 232 ~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~-q~L~~~g---------~~L~d~~tl~~~~i~~~~tl~l~~ 299 (457)
.|..++|....+.+++..|+.++-..|+++.|+.... .-|.+.. .-|+..+++...+.....++++..
T Consensus 89 ~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~frv 166 (371)
T 3ivf_A 89 KIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLLRR 166 (371)
T ss_dssp EEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEEEE
T ss_pred EEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEEEE
Confidence 8999999999999999999999999999999985544 4455532 125556677776665555665543
No 210
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.85 E-value=7.8e-05 Score=67.08 Aligned_cols=90 Identities=14% Similarity=0.311 Sum_probs=76.4
Q ss_pred CCeeEEEEccCCceEEEEeeCCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEEEeecCcee
Q 012759 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ 306 (457)
Q Consensus 227 ~~~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~~~~~~~~ 306 (457)
..+.+.|.. .|..+.+.+.+.+.+..|+...+++.|+|+++++|.|.|+.+.+..|..+....++++|.+...+.++..
T Consensus 20 ~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~Gg~t 98 (209)
T 3uf8_A 20 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGST 98 (209)
T ss_dssp SEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTTCCC
T ss_pred CcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhcccccccc
Confidence 345666666 7788999999999999999999999999999999999999999999999999999999998887766654
Q ss_pred eEEEeeCCcEEE
Q 012759 307 IFVKTLTGKTIT 318 (457)
Q Consensus 307 i~i~~~~g~~~~ 318 (457)
+ +++.+|-.+.
T Consensus 99 ~-~~~~sGl~~~ 109 (209)
T 3uf8_A 99 V-VTTESGLKYE 109 (209)
T ss_dssp C-EECTTSCEEE
T ss_pred c-cCCCCceEEE
Confidence 3 4455665444
No 211
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=97.85 E-value=6.8e-05 Score=58.30 Aligned_cols=70 Identities=13% Similarity=0.295 Sum_probs=63.9
Q ss_pred eeEEEEccCCc-eEEEEeeCCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEE
Q 012759 229 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298 (457)
Q Consensus 229 ~~i~V~~~~g~-~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~ 298 (457)
+.+.|+..+|. .+.+.+.+.++++.|....+++.|+++...+|+|.|+.+.++.|..++++.++++|.+.
T Consensus 26 I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 26 LQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 55667777884 89999999999999999999999999999999999999999999999999999998653
No 212
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.81 E-value=2.6e-06 Score=84.63 Aligned_cols=77 Identities=12% Similarity=0.299 Sum_probs=0.0
Q ss_pred ceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCCC
Q 012759 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG~ 457 (457)
.+.|.|++ +|....+++.++++...|+...+++.|+++.+++++|+|+.|.++.|.+++++++|++|.+...++||.
T Consensus 30 ~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~ 106 (389)
T 4da1_A 30 HINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGE 106 (389)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred cEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecccccc
Confidence 45667766 677888999999999999999999999999999999999999999999999999999999999999994
No 213
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.78 E-value=7.8e-05 Score=56.40 Aligned_cols=74 Identities=20% Similarity=0.252 Sum_probs=68.6
Q ss_pred CceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEe
Q 012759 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r 452 (457)
..|.+.|-+.+|+...+.|.|++++.++-+..++++|+++++-.|.|+++.|+-+.++.-.|+.+|+.+.++..
T Consensus 8 ~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~ 81 (90)
T 2al3_A 8 GGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV 81 (90)
T ss_dssp --CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred CccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999998754
No 214
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.72 E-value=4.5e-06 Score=80.26 Aligned_cols=87 Identities=13% Similarity=0.332 Sum_probs=3.0
Q ss_pred EEEecCceEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEecCcccCCCCcccccccccCCcceEEEEe
Q 012759 70 VLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (457)
Q Consensus 70 ~~~~~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~ 149 (457)
...+...+.|.|+. +|+.+.+.|..+++...|++..+++.|++++++++.|+|+.+.++.|.+++++.+|++|++..+.
T Consensus 15 ~~~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q 93 (360)
T 3ix6_A 15 EVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 93 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhcc
Confidence 33445567788876 67889999999999999999999999999999999999999999999999999999999999998
Q ss_pred ecceeeeE
Q 012759 150 RGGMQIFV 157 (457)
Q Consensus 150 ~~~~~i~v 157 (457)
.|||..+.
T Consensus 94 ~g~~~~Yl 101 (360)
T 3ix6_A 94 IGGMRTYL 101 (360)
T ss_dssp ---CHHHH
T ss_pred CchHHHHH
Confidence 88886554
No 215
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.63 E-value=7.2e-05 Score=60.95 Aligned_cols=71 Identities=27% Similarity=0.393 Sum_probs=60.4
Q ss_pred eeEEEeeCCcEEEEEeecCccHHHHHHHhhhhcCCCCC-------------------------------------CceEE
Q 012759 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-------------------------------------QQRLI 348 (457)
Q Consensus 306 ~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~-------------------------------------~q~l~ 348 (457)
.+.|++++|...++.|+.+.||.+++..|+.+.||+.. +|+|.
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 58899999999999999999999999999999999965 33332
Q ss_pred e--cCeeccCCCcccccccccCceEEEEEE
Q 012759 349 F--AGKQLEDGRTLADYNIQKESTLHLVLR 376 (457)
Q Consensus 349 ~--~g~~L~d~~~l~~~~i~~~~~l~l~~~ 376 (457)
- ..+-|+++++|.++||..+++|.|..+
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 1 125589999999999999999988764
No 216
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.51 E-value=0.00012 Score=59.68 Aligned_cols=71 Identities=27% Similarity=0.393 Sum_probs=58.6
Q ss_pred eeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCC-------------------------------------CeEEE
Q 012759 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-------------------------------------QQRLI 424 (457)
Q Consensus 382 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~-------------------------------------~q~l~ 424 (457)
.+.|+.++|...++.|+.+.+|.+++..|+.+.||+.. .|+|.
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 47889999999999999999999999999999999855 23331
Q ss_pred E--CCeEcCCCCcccccCCCCCCEEEEEEe
Q 012759 425 F--AGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 425 ~--~g~~L~d~~tL~~~~I~~~~~i~l~~r 452 (457)
. ++.-|+++.||.++||.++++|.|..+
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 1 125567789999999999999887654
No 217
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.46 E-value=0.00054 Score=52.28 Aligned_cols=70 Identities=14% Similarity=0.304 Sum_probs=64.1
Q ss_pred eeEEEEccCCceEEEEeeCCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEEE
Q 012759 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 299 (457)
Q Consensus 229 ~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~ 299 (457)
+.+.|+ .+|..+.+.+..++..+.|....+++.|++++.-+|.|.|..+.++.|..+.++.++++|..+.
T Consensus 22 IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 22 FPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp EEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred EEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence 455566 4789999999999999999999999999999999999999999999999999999999997654
No 218
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.36 E-value=0.00045 Score=51.52 Aligned_cols=62 Identities=15% Similarity=0.219 Sum_probs=53.9
Q ss_pred CCCCEEEEEecCCchHHHHHHHHhhhcCCCCC-----CeEEEECCeEcCCCCcccccCCCCCCEEEE
Q 012759 388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-----QQRLIFAGKQLEDGRTLADYNIQKESTLHL 449 (457)
Q Consensus 388 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~-----~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l 449 (457)
..|+++.+.++...||.+|+..+.+.++++.. +.++.-.|..|.++.+|++|+|.+|+.|.+
T Consensus 14 y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 14 YNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp TTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred cCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 47899999999999999999999999988752 235555788999999999999999999875
No 219
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.06 E-value=0.0029 Score=47.86 Aligned_cols=72 Identities=18% Similarity=0.314 Sum_probs=61.2
Q ss_pred CceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEE--ECCeEcC---CCCcccccCCCCCCEEEEEE
Q 012759 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~--~~g~~L~---d~~tL~~~~I~~~~~i~l~~ 451 (457)
+...|-||..+|+...-....++||.+|...|.. .+.++..+.|. |-.+.+. .+.||.++|+.+.++|.|--
T Consensus 6 ~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 6 PVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 4567889999999888899999999999999998 67888888887 4467784 46799999999999998754
No 220
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.05 E-value=8.9e-05 Score=73.53 Aligned_cols=82 Identities=11% Similarity=0.320 Sum_probs=0.0
Q ss_pred CceEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEecCcccCCCCcccccccccCCcceEEEEeeccee
Q 012759 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ 154 (457)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~~~~~ 154 (457)
+.+.|.|+. +|+.+.+.|..+++...|++...++.|++++++++.|+|+.+.++.|..++++.+|++|++.....|+..
T Consensus 29 ~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~n 107 (389)
T 4da1_A 29 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGEN 107 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccccc
Confidence 345666766 6788899999999999999999999999999999999999999999999999999999999988877765
Q ss_pred eeE
Q 012759 155 IFV 157 (457)
Q Consensus 155 i~v 157 (457)
+++
T Consensus 108 ~~~ 110 (389)
T 4da1_A 108 LYF 110 (389)
T ss_dssp ---
T ss_pred cce
Confidence 554
No 221
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=96.71 E-value=0.0076 Score=45.46 Aligned_cols=70 Identities=19% Similarity=0.360 Sum_probs=59.4
Q ss_pred eeeEEEeeCCcEEEEEeecCccHHHHHHHhhhhcCCCCCCceEE--ecCeec---cCCCcccccccccCceEEEEE
Q 012759 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVL 375 (457)
Q Consensus 305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L---~d~~~l~~~~i~~~~~l~l~~ 375 (457)
..|.|+..+|..+.-.++.++|+.+|..-|.. .+.++....|+ |+.+.+ +.+.+|.++|+.+..+|.+..
T Consensus 8 ~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 8 SKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 36788999999999999999999999999998 56677777777 667777 567999999999999988864
No 222
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=96.61 E-value=0.0066 Score=45.21 Aligned_cols=64 Identities=14% Similarity=0.236 Sum_probs=53.9
Q ss_pred EeeCCcEEEEEeecCccHHHHHHHhhhhcCCCCCCce-----EEecCeeccCCCcccccccccCceEEE
Q 012759 310 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-----LIFAGKQLEDGRTLADYNIQKESTLHL 373 (457)
Q Consensus 310 ~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~-----l~~~g~~L~d~~~l~~~~i~~~~~l~l 373 (457)
+.++++++.+.++...|+..|++.+.+-++++...-. ..-++..|.++..|++|++.+|+.+.+
T Consensus 12 ~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 12 KHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp TTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred eccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 3479999999999999999999999999998764212 224678899999999999999998865
No 223
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.02 E-value=0.016 Score=47.19 Aligned_cols=72 Identities=19% Similarity=0.323 Sum_probs=61.0
Q ss_pred CceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEE--ECCeEc--CC-CCcccccCCCCCCEEEEEE
Q 012759 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL--ED-GRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~--~~g~~L--~d-~~tL~~~~I~~~~~i~l~~ 451 (457)
+...|-||..+|..+.-....++||.+|...|... +.++..+.|+ |-.+.| +| +.||.++|+.+..+|.|.-
T Consensus 42 ~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 42 PKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 45778999999999999999999999999999987 8888888887 457788 33 6799999999988887653
No 224
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=96.01 E-value=0.028 Score=44.57 Aligned_cols=74 Identities=16% Similarity=0.230 Sum_probs=62.1
Q ss_pred CceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEE--ECCeEcC--C-CCcccccCCCCCCEEEEEEe
Q 012759 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--D-GRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~--~~g~~L~--d-~~tL~~~~I~~~~~i~l~~r 452 (457)
+...|-||..+|....-....++||.+|...|....+.+...+.|. |-.+.+. | +.||.++|+.+..+|.+...
T Consensus 12 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 12 TIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 3467889999999999999999999999999999988887788876 4566776 3 57999999999988887653
No 225
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=95.85 E-value=0.038 Score=43.83 Aligned_cols=72 Identities=15% Similarity=0.228 Sum_probs=61.4
Q ss_pred eeeEEEeeCCcEEEEEeecCccHHHHHHHhhhhcCCCCCCceEE--ecCeecc---CCCcccccccccCceEEEEEE
Q 012759 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVLR 376 (457)
Q Consensus 305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L~---d~~~l~~~~i~~~~~l~l~~~ 376 (457)
..|.|+..+|..+.-.++.++|+.+|.+-|....+.+...-.|+ |+.+.+. .+++|.+.|+.+..+|.+...
T Consensus 14 t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 14 ARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp EEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 46889999999999999999999999999999877776666676 6777775 478999999999888888754
No 226
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=95.74 E-value=0.028 Score=45.73 Aligned_cols=71 Identities=18% Similarity=0.330 Sum_probs=60.3
Q ss_pred eeeEEEeeCCcEEEEEeecCccHHHHHHHhhhhcCCCCCCceEE--ecCeec---cCCCcccccccccCceEEEEEE
Q 012759 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVLR 376 (457)
Q Consensus 305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L---~d~~~l~~~~i~~~~~l~l~~~ 376 (457)
..|.|+..+|..+.-.+..++|+.+|..-|... +.+...-.|+ |..+.+ +.+.+|.+.|+.+..+|.+...
T Consensus 44 t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~~ 119 (124)
T 1wj4_A 44 AQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQES 119 (124)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEEc
Confidence 468899999999999999999999999999887 7776666676 777877 4589999999999888888743
No 227
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=95.52 E-value=0.14 Score=36.90 Aligned_cols=67 Identities=24% Similarity=0.337 Sum_probs=54.0
Q ss_pred ceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
.|+|.|....+ ...++++...|+.+|...+ ++++....+..||..+..+. -+++|+.|.+.-...||
T Consensus 4 ~m~i~vNg~~~-~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V~GG 70 (70)
T 1ryj_A 4 GMKFTVITDDG-KKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVIYGG 70 (70)
T ss_dssp CEEEEEEETTE-EEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECTTCC
T ss_pred eEEEEEeCccC-ceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEeccccC
Confidence 58888886654 3567888889999999886 56777778889999998665 57789999998888777
No 228
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.96 E-value=0.037 Score=40.81 Aligned_cols=64 Identities=13% Similarity=0.227 Sum_probs=55.3
Q ss_pred ceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEC---CeEcCCCCcccccCCCC
Q 012759 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQLEDGRTLADYNIQK 443 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~---g~~L~d~~tL~~~~I~~ 443 (457)
++.+.|.....+...+.|+|..++++|-..|+++-.+.|++-.|... +.+|+=+++|.+|||++
T Consensus 10 TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 10 TVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp CEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred EEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 45556666677788899999999999999999999999999998864 55888889999999986
No 229
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=94.73 E-value=0.045 Score=43.05 Aligned_cols=64 Identities=34% Similarity=0.383 Sum_probs=43.8
Q ss_pred CCcEEEEEecCCCcHHHHHHHHhh--hcCCCCcc------ceEee----ccEEccCC-------------Cccccccccc
Q 012759 9 TGKTITLEVESSDTIDNVKAKIQD--KEGIPPDQ------QRLIF----AGKQLEDG-------------RTLADYNIQK 63 (457)
Q Consensus 9 ~g~~~~~~v~~~dtv~~ik~ki~~--~~gip~~~------q~l~~----~g~~L~~~-------------~tl~~y~i~~ 63 (457)
++..+++.|-..|||..+|+||-+ +.|.|.++ ..|-| .|+.|.|. +||++|+|.+
T Consensus 22 ~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 101 (111)
T 4e71_A 22 GVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRD 101 (111)
T ss_dssp CCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCT
T ss_pred CCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCC
Confidence 356788899999999999999965 35777653 33444 34556541 5899999999
Q ss_pred ccceeEEEE
Q 012759 64 ESTLHLVLR 72 (457)
Q Consensus 64 ~sti~l~~~ 72 (457)
|+++-++.+
T Consensus 102 gatl~l~~~ 110 (111)
T 4e71_A 102 GATLILSKV 110 (111)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEeC
Confidence 999987653
No 230
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=94.55 E-value=0.14 Score=40.20 Aligned_cols=62 Identities=37% Similarity=0.455 Sum_probs=44.3
Q ss_pred CceEEEeecCCChHHHHHHHHhhhh--CCCC------CceEEEE----CCeecCCC-------------CCccccCCCcC
Q 012759 162 GKTITLEVESSDTIDNVKAKIQDKE--GIPP------DQQRLIF----AGKQLEDG-------------RTLADYNIQKE 216 (457)
Q Consensus 162 g~~~~~~v~~~~tV~~lK~~i~~~~--gip~------~~q~L~~----~g~~L~d~-------------~tL~~y~I~~~ 216 (457)
+..+++.|-.-|||.++|+||-+.. |.|. +...|-+ .|+.|.|. +||++|+|.+|
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 4568888999999999999997643 5553 4445544 25666551 48999999999
Q ss_pred cEEEEEE
Q 012759 217 STLHLVL 223 (457)
Q Consensus 217 ~~i~l~~ 223 (457)
+++.++.
T Consensus 103 atl~l~~ 109 (111)
T 4e71_A 103 ATLILSK 109 (111)
T ss_dssp CEEEEEE
T ss_pred CEEEEEe
Confidence 9998764
No 231
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=94.50 E-value=0.11 Score=41.06 Aligned_cols=71 Identities=18% Similarity=0.228 Sum_probs=58.6
Q ss_pred ceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEE--ECCeEcC--CCCcccccCCCCCCEEEEEE
Q 012759 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--DGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~--~~g~~L~--d~~tL~~~~I~~~~~i~l~~ 451 (457)
...|-||..+|+.+.-....++||.+|...|... +..+..+.|. |-.+.|. .+.||+++|+.+..+|.|.-
T Consensus 23 ~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 23 VVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp EEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 4678889999998888999999999999999965 5566777776 4467776 36799999999999987754
No 232
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=94.38 E-value=0.24 Score=36.35 Aligned_cols=58 Identities=19% Similarity=0.374 Sum_probs=51.0
Q ss_pred EEEEeeCCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEE
Q 012759 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298 (457)
Q Consensus 241 ~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~ 298 (457)
+.-.++-..++..||..++.+.|++.+.+.+...+..|+++++|.+.|++-+..+.+.
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQin 62 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLS 62 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEE
Confidence 3445667788999999999999999999999999988999999999999988887653
No 233
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=94.16 E-value=0.084 Score=47.39 Aligned_cols=65 Identities=23% Similarity=0.343 Sum_probs=53.2
Q ss_pred EEEEEecCCchHHHHHHHHhhhcCCCCC-CeEEEE---C--CeEcCC-CCcccccCCCCCCEEEEEEecCCC
Q 012759 392 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF---A--GKQLED-GRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~gip~~-~q~l~~---~--g~~L~d-~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
.+++.++..+||.+|++.++..++||++ +.||-. . ...|+| +.||.++++.++..|.+-.|...|
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg 212 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDG 212 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 4667889999999999999999999997 677642 2 235665 469999999999999999987666
No 234
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=94.07 E-value=0.14 Score=46.34 Aligned_cols=65 Identities=20% Similarity=0.305 Sum_probs=53.7
Q ss_pred EEEEEecCCchHHHHHHHHhhhcCCCCC-CeEEEE-C----CeEcCC-CCcccccCCCCCCEEEEEEecCCC
Q 012759 392 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-A----GKQLED-GRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~gip~~-~q~l~~-~----g~~L~d-~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
.++..++..+||.+|++.++...+||++ ..||-. . ...|.| +.||.++++.++..|.+-.|..-|
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg 224 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDG 224 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTS
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 3567789999999999999999999997 577754 3 346665 579999999999999999886554
No 235
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=94.05 E-value=0.13 Score=41.91 Aligned_cols=69 Identities=20% Similarity=0.338 Sum_probs=56.3
Q ss_pred CceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhc-CCCCCCeEEE--ECCeEcCC-CCcccccCCCCCCEE
Q 012759 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLI--FAGKQLED-GRTLADYNIQKESTL 447 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~-gip~~~q~l~--~~g~~L~d-~~tL~~~~I~~~~~i 447 (457)
+...|-||..+|....-....++||.+|...|.... +.+...+.|. |-.+.++| +.||.++|+.+..+|
T Consensus 51 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 51 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp CCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 356788999999999999999999999999999863 4556777776 45788875 579999999985544
No 236
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=93.82 E-value=0.21 Score=39.44 Aligned_cols=71 Identities=18% Similarity=0.228 Sum_probs=57.5
Q ss_pred ceeeeEeeccCceEEEeecCCChHHHHHHHHhhhhCCCCCceEEE--ECCeecC--CCCCccccCCCcCcEEEEEE
Q 012759 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--DGRTLADYNIQKESTLHLVL 223 (457)
Q Consensus 152 ~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~g~~L~--d~~tL~~y~I~~~~~i~l~~ 223 (457)
...|.|+.++|+.+.-....++||.+|...|... +.....+.|+ |-.+.+. .+.||.+.|+.+..++.+..
T Consensus 23 ~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 23 VVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp EEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 4677888899999999999999999999999865 5555667776 5567775 46899999999998886654
No 237
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=93.45 E-value=0.21 Score=40.63 Aligned_cols=65 Identities=32% Similarity=0.512 Sum_probs=47.0
Q ss_pred CcEEEEEecCCCcHHHHHHHHhhh--cCCCCcc------ceEee----ccEE-ccCC-------------Cccccccccc
Q 012759 10 GKTITLEVESSDTIDNVKAKIQDK--EGIPPDQ------QRLIF----AGKQ-LEDG-------------RTLADYNIQK 63 (457)
Q Consensus 10 g~~~~~~v~~~dtv~~ik~ki~~~--~gip~~~------q~l~~----~g~~-L~~~-------------~tl~~y~i~~ 63 (457)
...+++.|-..|||..+|+||-+. -|+|.++ --|-| .|+. |.|. +||+.|+|.+
T Consensus 40 ~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D 119 (138)
T 2r2o_A 40 AQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 119 (138)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred CCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence 367899999999999999999764 5676643 23333 2433 5542 4899999999
Q ss_pred ccceeEEEEec
Q 012759 64 ESTLHLVLRLR 74 (457)
Q Consensus 64 ~sti~l~~~~~ 74 (457)
++++-++.+..
T Consensus 120 ga~l~l~~~~~ 130 (138)
T 2r2o_A 120 GATVALVPCLT 130 (138)
T ss_dssp TCEEEEEEC--
T ss_pred CCEEEEEECCC
Confidence 99999987643
No 238
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=93.45 E-value=0.37 Score=38.63 Aligned_cols=67 Identities=27% Similarity=0.434 Sum_probs=48.9
Q ss_pred EcCCCcEEEEEecCCCcHHHHHHHHhhh--cCCCCc------cceEee----ccEE-ccC---------C----Cccccc
Q 012759 6 KTLTGKTITLEVESSDTIDNVKAKIQDK--EGIPPD------QQRLIF----AGKQ-LED---------G----RTLADY 59 (457)
Q Consensus 6 ~~~~g~~~~~~v~~~dtv~~ik~ki~~~--~gip~~------~q~l~~----~g~~-L~~---------~----~tl~~y 59 (457)
...++..+++.|-..|||..+|+||-+. .|.|.+ ...|-| .|+. |.| + +||++|
T Consensus 12 ~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY 91 (127)
T 3h6n_A 12 QGCGMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHY 91 (127)
T ss_dssp ETSCCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTT
T ss_pred cCCCCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEecccccc
Confidence 3345677889999999999999999663 566654 344555 2332 544 1 689999
Q ss_pred ccccccceeEEEE
Q 012759 60 NIQKESTLHLVLR 72 (457)
Q Consensus 60 ~i~~~sti~l~~~ 72 (457)
+|.+++++-++.+
T Consensus 92 ~V~dgatv~l~~~ 104 (127)
T 3h6n_A 92 KIPEGASLAMSLI 104 (127)
T ss_dssp TCCTTCEEEEEEC
T ss_pred CCCCCCEEEEEEc
Confidence 9999999988765
No 239
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=93.43 E-value=0.36 Score=39.29 Aligned_cols=65 Identities=31% Similarity=0.474 Sum_probs=46.8
Q ss_pred CceEEEeecCCChHHHHHHHHhhhh--CCCC------CceEEEE----CCe-ecCCC-------------CCccccCCCc
Q 012759 162 GKTITLEVESSDTIDNVKAKIQDKE--GIPP------DQQRLIF----AGK-QLEDG-------------RTLADYNIQK 215 (457)
Q Consensus 162 g~~~~~~v~~~~tV~~lK~~i~~~~--gip~------~~q~L~~----~g~-~L~d~-------------~tL~~y~I~~ 215 (457)
...+++.|-.-|||.++|+||-+.. |.|- ++.-|-+ .|+ .|.|. .||+.|+|.+
T Consensus 40 ~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D 119 (138)
T 2r2o_A 40 AQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 119 (138)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred CCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence 3568999999999999999998753 5653 3344433 243 35542 3999999999
Q ss_pred CcEEEEEEEec
Q 012759 216 ESTLHLVLRLR 226 (457)
Q Consensus 216 ~~~i~l~~~~~ 226 (457)
|+++.++.+..
T Consensus 120 ga~l~l~~~~~ 130 (138)
T 2r2o_A 120 GATVALVPCLT 130 (138)
T ss_dssp TCEEEEEEC--
T ss_pred CCEEEEEECCC
Confidence 99999887654
No 240
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=93.35 E-value=0.36 Score=35.46 Aligned_cols=61 Identities=18% Similarity=0.383 Sum_probs=54.4
Q ss_pred EEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEec
Q 012759 393 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 453 (457)
Q Consensus 393 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~ 453 (457)
+.-..+-+.++..||..++.+.|++.+.-.+...+..|+++++|.+-+|+-.-.+.+++-.
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence 3345677889999999999999999999999999999999999999999999899888764
No 241
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=93.23 E-value=0.18 Score=36.73 Aligned_cols=66 Identities=14% Similarity=0.350 Sum_probs=49.7
Q ss_pred eeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
|+|.|+........++++++.||++|-+. .|+|++.-....||+.+..+. +.+|+.|.+.--.-||
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~~V~G~ 66 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRA----VDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLRLIKGG 66 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHT----TCCCSSCCCEECCCCCCCTTS------SSCCCCEEECSSCSCC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHH----cCCCcceEEEEECCEECCHHH------CCCCCEEEEEEeeccc
Confidence 67777766445567899999999987654 799999888888999887665 2348888876555555
No 242
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=93.14 E-value=0.68 Score=37.14 Aligned_cols=64 Identities=27% Similarity=0.405 Sum_probs=48.0
Q ss_pred CCCEEEEEecCCchHHHHHHHHhhhc--CCC------CCCeEEEE----CCe-EcCCC-------------CcccccCCC
Q 012759 389 TGKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF----AGK-QLEDG-------------RTLADYNIQ 442 (457)
Q Consensus 389 ~g~~~~l~v~~~~tV~~lK~~i~~~~--gip------~~~q~l~~----~g~-~L~d~-------------~tL~~~~I~ 442 (457)
.+..+.++|-..+||.++|++|-+.. |.| ++...|-+ .|+ .|.|. .||+.|+|.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 44568888889999999999997764 454 35666665 233 36542 589999999
Q ss_pred CCCEEEEEEe
Q 012759 443 KESTLHLVLR 452 (457)
Q Consensus 443 ~~~~i~l~~r 452 (457)
+|+++.+..+
T Consensus 95 dgatv~l~~~ 104 (127)
T 3h6n_A 95 EGASLAMSLI 104 (127)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEc
Confidence 9999999765
No 243
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=92.52 E-value=0.3 Score=39.69 Aligned_cols=68 Identities=21% Similarity=0.351 Sum_probs=54.6
Q ss_pred ceeeeEeeccCceEEEeecCCChHHHHHHHHhhhh-CCCCCceEEE--ECCeecCC-CCCccccCCCcCcEE
Q 012759 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLI--FAGKQLED-GRTLADYNIQKESTL 219 (457)
Q Consensus 152 ~~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-gip~~~q~L~--~~g~~L~d-~~tL~~y~I~~~~~i 219 (457)
...|.|+..+|..+.-..+.++||.+|...|.... +.+...+.|+ |-.+.++| +.||.+.|+.+...+
T Consensus 52 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 52 TTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp CCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 35677888999999999999999999999998863 3555667776 45788865 689999999986554
No 244
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=92.32 E-value=0.29 Score=36.40 Aligned_cols=47 Identities=11% Similarity=0.158 Sum_probs=42.2
Q ss_pred CceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECC
Q 012759 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 427 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g 427 (457)
.+|.|.|.+. -++.+.|+++.+..+|..+|+++.++|++...|.|..
T Consensus 4 ~~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 4 MAYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp SCEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred CcEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 4577888876 4899999999999999999999999999999999964
No 245
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=91.69 E-value=0.41 Score=37.97 Aligned_cols=63 Identities=32% Similarity=0.513 Sum_probs=45.9
Q ss_pred CcEEEEEecCCCcHHHHHHHHhh--hcCCCCcc------ceEee-cc---E-EccC---------C----Cccccccccc
Q 012759 10 GKTITLEVESSDTIDNVKAKIQD--KEGIPPDQ------QRLIF-AG---K-QLED---------G----RTLADYNIQK 63 (457)
Q Consensus 10 g~~~~~~v~~~dtv~~ik~ki~~--~~gip~~~------q~l~~-~g---~-~L~~---------~----~tl~~y~i~~ 63 (457)
+..+++.|-..|||..+|+||-+ +.|.|.++ ..|-| .| + .|.| + +||++|+|.+
T Consensus 26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 45688888899999999999965 45777653 34444 22 3 2444 1 5899999999
Q ss_pred ccceeEEEE
Q 012759 64 ESTLHLVLR 72 (457)
Q Consensus 64 ~sti~l~~~ 72 (457)
++++-++.+
T Consensus 106 gatl~l~~~ 114 (117)
T 4e74_A 106 GSVVALVSK 114 (117)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEeC
Confidence 999998765
No 246
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.56 E-value=0.38 Score=35.48 Aligned_cols=63 Identities=13% Similarity=0.244 Sum_probs=53.4
Q ss_pred eeeeEeeccCceEEEeecCCChHHHHHHHHhhhhCCCCCceEEEE---CCeecCCCCCccccCCCc
Q 012759 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQK 215 (457)
Q Consensus 153 ~~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~---~g~~L~d~~tL~~y~I~~ 215 (457)
+.+.|.....+...+.|+|..+.+++--.|.++..+.++..-|.- .+..|+-+++|.+|||++
T Consensus 11 vRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 11 VRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp EEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred EEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 445555566677789999999999999999999999999888864 367899999999999997
No 247
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=91.31 E-value=0.71 Score=36.62 Aligned_cols=64 Identities=31% Similarity=0.501 Sum_probs=46.3
Q ss_pred CceEEEeecCCChHHHHHHHHhhh--hCCCC------CceEEEE-CC---e-ecCCC-------------CCccccCCCc
Q 012759 162 GKTITLEVESSDTIDNVKAKIQDK--EGIPP------DQQRLIF-AG---K-QLEDG-------------RTLADYNIQK 215 (457)
Q Consensus 162 g~~~~~~v~~~~tV~~lK~~i~~~--~gip~------~~q~L~~-~g---~-~L~d~-------------~tL~~y~I~~ 215 (457)
...+++.|-.-|||.++|++|-+. .|.|. +...|-+ .| + .|.|. +||++|+|.+
T Consensus 26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 455888899999999999999764 35553 4455544 23 3 35441 4899999999
Q ss_pred CcEEEEEEEe
Q 012759 216 ESTLHLVLRL 225 (457)
Q Consensus 216 ~~~i~l~~~~ 225 (457)
|+++.++.+.
T Consensus 106 gatl~l~~~~ 115 (117)
T 4e74_A 106 GSVVALVSKQ 115 (117)
T ss_dssp TCEEEEEECC
T ss_pred CCEEEEEeCC
Confidence 9999987653
No 248
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=90.99 E-value=1.6 Score=33.45 Aligned_cols=73 Identities=14% Similarity=0.322 Sum_probs=50.6
Q ss_pred CceeeEEEcC------CC-CEEEEEecCCchHHHHHHHHhhhcC-C----------CCCCeEEEECCeEcCCCCcccccC
Q 012759 379 GGMQIFVKTL------TG-KTITLEVESSDTIDNVKAKIQDKEG-I----------PPDQQRLIFAGKQLEDGRTLADYN 440 (457)
Q Consensus 379 ~~~~i~v~~~------~g-~~~~l~v~~~~tV~~lK~~i~~~~g-i----------p~~~q~l~~~g~~L~d~~tL~~~~ 440 (457)
++|+|.|+.. .| ....++++...||.+|.+.+..... + ......+..||+.... +.-
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~ 82 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEE 82 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCB
T ss_pred CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCC
Confidence 5677888754 23 3677888888999999999987741 1 1234567788887764 456
Q ss_pred CCCCCEEEEEEecCCC
Q 012759 441 IQKESTLHLVLRLRGG 456 (457)
Q Consensus 441 I~~~~~i~l~~r~~GG 456 (457)
+++|+.|.+.-..-||
T Consensus 83 L~dGDeV~i~ppv~GG 98 (98)
T 1vjk_A 83 LKDGDVVGVFPPVSGG 98 (98)
T ss_dssp CCTTCEEEEESCC---
T ss_pred CCCCCEEEEECCCCCC
Confidence 7889999998877777
No 249
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=90.80 E-value=0.78 Score=34.46 Aligned_cols=68 Identities=13% Similarity=0.205 Sum_probs=48.0
Q ss_pred CceeeEEEcCCCCEEEEEecCC-chHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 379 GGMQIFVKTLTGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~-~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
..|+|.|. |+ .++++.+ .||.+|.+.+ ++++....+..||..+..+ ...+.-+++|+.|.+.-..-||
T Consensus 19 ~~M~I~vN---Ge--~~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~V~GG 87 (87)
T 1tyg_B 19 GRHMLQLN---GK--DVKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHFVGGG 87 (87)
T ss_dssp ---CEEET---TE--EECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEECCC-
T ss_pred cceEEEEC---CE--EEECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEcccccC
Confidence 45777654 43 4566777 8999999876 5777777888899988643 3444568889999998887777
No 250
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=89.61 E-value=1.3 Score=31.97 Aligned_cols=58 Identities=14% Similarity=0.370 Sum_probs=42.4
Q ss_pred EEEecCCchHHHHHHHHhhhcCCCC--CCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 394 TLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~gip~--~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
.+++ ...||.+|.+.+....++.. ....+.-||+.+.+ .+.-+++|+.|.+.-...||
T Consensus 15 ~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~PpvsGG 74 (74)
T 3rpf_C 15 NFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVCGG 74 (74)
T ss_dssp CEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBCCC
T ss_pred EEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCCCC
Confidence 3566 67899999999987544332 44567778887543 24457889999999888888
No 251
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=89.53 E-value=0.85 Score=33.84 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=38.4
Q ss_pred eEEEeeCCcEEEEEeecCccHHHHHHHhhhhcCCCCCCceEEecC
Q 012759 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 351 (457)
Q Consensus 307 i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g 351 (457)
+.||.+=..++.|.++++.+..+|.++|.+++++|++.-.|.|..
T Consensus 6 ~~VKV~~~~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 6 YTLKVHYKYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp EEEEEESSSEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred EEEEEEEEEEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 445555558999999999999999999999999999888888754
No 252
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=89.35 E-value=1.1 Score=32.59 Aligned_cols=60 Identities=12% Similarity=0.353 Sum_probs=44.0
Q ss_pred eeeEEEeeCCcEEEEEeecCccHHHHHHHhhhhcCCCCCCceEEecCeeccCCCcccccccccCceEEEE
Q 012759 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374 (457)
Q Consensus 305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~l~l~ 374 (457)
|+|.|+..+.....+++++++|+.|| -+.+|+|+..--...+|..++.+.. + .|+++.++
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dL----L~~Lgl~~~~VvV~vNG~~v~~d~~-----l-~GD~VeIv 60 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADL----VRAVDLSPHEVTVLVDGRPVPEDQS-----V-EVDRVKVL 60 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHH----HHTTCCCSSCCCEECCCCCCCTTSS-----S-CCCCEEEC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHH----HHHcCCCcceEEEEECCEECCHHHC-----C-CCCEEEEE
Confidence 56777755445556899999999999 7788999987766678887766652 2 37777765
No 253
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=89.17 E-value=1.6 Score=34.85 Aligned_cols=60 Identities=35% Similarity=0.546 Sum_probs=42.2
Q ss_pred cEEEEEEcCCCCHHHHHHHHhhh----hCCCCC----CeEEEe-cC---cccC----------CC----CcccccccccC
Q 012759 87 KTITLEVESSDTIDNVKAKIQDK----EGIPPD----QQRLIF-AG---KQLE----------DG----RTLADYNIQKE 140 (457)
Q Consensus 87 ~~~~l~v~~~~tV~~lK~~i~~~----~gip~~----~q~L~~-~g---~~L~----------d~----~tl~~y~i~~~ 140 (457)
..+++.|-.+|||.++|++|-+. .|.|.+ +..|-| .| ..|. +. .||++|+|.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 46888899999999999999763 477653 344443 23 2222 22 47889999999
Q ss_pred CcceEE
Q 012759 141 STLHLV 146 (457)
Q Consensus 141 s~i~l~ 146 (457)
+++-+.
T Consensus 119 atlal~ 124 (126)
T 3kuz_A 119 STIKVF 124 (126)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 988764
No 254
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=87.71 E-value=1 Score=40.63 Aligned_cols=64 Identities=19% Similarity=0.278 Sum_probs=51.6
Q ss_pred EEEEEEcCCCCHHHHHHHHhhhhCCCCC-CeEEEe-cC----cccCC-CCcccccccccCCcceEEEEeec
Q 012759 88 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-AG----KQLED-GRTLADYNIQKESTLHLVLRLRG 151 (457)
Q Consensus 88 ~~~l~v~~~~tV~~lK~~i~~~~gip~~-~q~L~~-~g----~~L~d-~~tl~~y~i~~~s~i~l~~~~~~ 151 (457)
.+++.++..+||.++++++....++|++ +-||.. .+ ..|+| +.+|.++++.++..|.+.++..+
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~d 223 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNED 223 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTT
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCC
Confidence 3567789999999999999999999997 578863 32 34665 58999999999998888776543
No 255
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=86.72 E-value=2.3 Score=33.89 Aligned_cols=61 Identities=34% Similarity=0.525 Sum_probs=43.0
Q ss_pred ceEEEeecCCChHHHHHHHHhhh----hCCCCC----ceEEEE-CC---eecCC----------C----CCccccCCCcC
Q 012759 163 KTITLEVESSDTIDNVKAKIQDK----EGIPPD----QQRLIF-AG---KQLED----------G----RTLADYNIQKE 216 (457)
Q Consensus 163 ~~~~~~v~~~~tV~~lK~~i~~~----~gip~~----~q~L~~-~g---~~L~d----------~----~tL~~y~I~~~ 216 (457)
+.+++.|-.-|||.++|++|-+. .|.|.. ...|-+ .| ..|.| + .||+.|+|.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 56888899999999999999653 477653 334433 12 23322 1 48999999999
Q ss_pred cEEEEEE
Q 012759 217 STLHLVL 223 (457)
Q Consensus 217 ~~i~l~~ 223 (457)
+++-++-
T Consensus 119 atlal~k 125 (126)
T 3kuz_A 119 STIKVFK 125 (126)
T ss_dssp CEEEEEE
T ss_pred CEEEEee
Confidence 9997763
No 256
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=86.51 E-value=1.2 Score=31.32 Aligned_cols=58 Identities=12% Similarity=0.212 Sum_probs=43.2
Q ss_pred EEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
.++++.+.||.+|...+ ++++....+..||..+..+ ...+.-+++|+.|.+.-..-||
T Consensus 9 ~~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~V~GG 66 (66)
T 1f0z_A 9 AMQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_dssp EECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEESCCCC
T ss_pred EEEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEeecccC
Confidence 34667889999999887 5677777888899988642 1223457789999998877776
No 257
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=86.38 E-value=1.1 Score=40.06 Aligned_cols=64 Identities=22% Similarity=0.326 Sum_probs=51.5
Q ss_pred EEEEEEcCCCCHHHHHHHHhhhhCCCCC-CeEEEe-c-C---cccCC-CCcccccccccCCcceEEEEeec
Q 012759 88 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-A-G---KQLED-GRTLADYNIQKESTLHLVLRLRG 151 (457)
Q Consensus 88 ~~~l~v~~~~tV~~lK~~i~~~~gip~~-~q~L~~-~-g---~~L~d-~~tl~~y~i~~~s~i~l~~~~~~ 151 (457)
.+++.++..+||.++++++....++|++ +-||.. . + ..|+| +.||.++++.++..|-+.++..+
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~d 211 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNED 211 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCC
Confidence 3678889999999999999999999997 577752 2 2 44655 57999999999998888776543
No 258
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=85.82 E-value=3.8 Score=30.54 Aligned_cols=61 Identities=15% Similarity=0.245 Sum_probs=46.7
Q ss_pred CEEEEEecCCchHHHHHHHHhhhcC-C-----C-----CCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 391 KTITLEVESSDTIDNVKAKIQDKEG-I-----P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 391 ~~~~l~v~~~~tV~~lK~~i~~~~g-i-----p-----~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
....++++...||.+|.+.+..... + . .....+.-||+.... +.-+++|+.|.+.-...||
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~GG 89 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVSGG 89 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCSCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCCCC
Confidence 4677888888999999999988752 1 0 023577789988875 3457789999999888887
No 259
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=83.97 E-value=0.99 Score=36.72 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=31.5
Q ss_pred EEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEC
Q 012759 392 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 426 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~ 426 (457)
...+.|..++|+.+||..|++..|+|+++|||-..
T Consensus 57 ~~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 57 YTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp CEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred cceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 35689999999999999999999999999998764
No 260
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=83.17 E-value=4.7 Score=37.43 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=55.2
Q ss_pred ceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCC-eEEEE---CCe--EcCCCCcccccCCCCCCEEEEEEec
Q 012759 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF---AGK--QLEDGRTLADYNIQKESTLHLVLRL 453 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~-q~l~~---~g~--~L~d~~tL~~~~I~~~~~i~l~~r~ 453 (457)
++.+.|..++| +..+.+++++|+.++-..|++..|+.... +-|.+ +|. -|+.++++.+.++..+....+.+|.
T Consensus 1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr~ 79 (294)
T 1ef1_A 1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFRA 79 (294)
T ss_dssp CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEEE
T ss_pred CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEEE
Confidence 35677778888 68899999999999999999999987654 45555 232 4677788888877666666666653
No 261
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=83.03 E-value=3.2 Score=30.24 Aligned_cols=59 Identities=7% Similarity=0.153 Sum_probs=43.3
Q ss_pred EEEEEecCCchHHHHHHHHhhhcC-----CCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 392 TITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~g-----ip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
...++ ....||.+|...+..... ++.....+..||+.... +.-+++|+.|.+.-...||
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv~GG 81 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCCCCC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCCCCC
Confidence 45555 577899999999986632 23344578889998764 4457789999998888887
No 262
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=82.61 E-value=4.5 Score=38.02 Aligned_cols=75 Identities=11% Similarity=0.122 Sum_probs=57.8
Q ss_pred cCceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCC-CeEEEE--CCe--EcCCCCcccccCCCCCCEEEEEEe
Q 012759 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF--AGK--QLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~-~q~l~~--~g~--~L~d~~tL~~~~I~~~~~i~l~~r 452 (457)
+.++.+.|..++| +..+.+++++|+.+|-..|+...|+... .+-|.| +|. -|+.++++.+.++..+....+.+|
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 4567888888998 7889999999999999999999998753 345555 333 377888899987776666666655
Q ss_pred c
Q 012759 453 L 453 (457)
Q Consensus 453 ~ 453 (457)
.
T Consensus 99 ~ 99 (314)
T 1h4r_A 99 A 99 (314)
T ss_dssp E
T ss_pred E
Confidence 3
No 263
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=82.50 E-value=5.9 Score=30.15 Aligned_cols=71 Identities=11% Similarity=0.273 Sum_probs=48.1
Q ss_pred cCceEEEEEccC------C-cEEEEEEcCCCCHHHHHHHHhhhhC-C----------CCCCeEEEecCcccCCCCccccc
Q 012759 74 RGGMQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-I----------PPDQQRLIFAGKQLEDGRTLADY 135 (457)
Q Consensus 74 ~~~~~i~vk~~~------g-~~~~l~v~~~~tV~~lK~~i~~~~g-i----------p~~~q~L~~~g~~L~d~~tl~~y 135 (457)
.++|.|.|+... | ....++++...||.+|.+.+..... + ....-.+..||+.... ++
T Consensus 7 ~~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~ 81 (98)
T 1vjk_A 7 HGSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DE 81 (98)
T ss_dssp --CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TC
T ss_pred cCcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CC
Confidence 367889998643 3 4677888888999999999876531 1 1233556778877653 56
Q ss_pred ccccCCcceEEEEe
Q 012759 136 NIQKESTLHLVLRL 149 (457)
Q Consensus 136 ~i~~~s~i~l~~~~ 149 (457)
-+++|+.|.+....
T Consensus 82 ~L~dGDeV~i~ppv 95 (98)
T 1vjk_A 82 ELKDGDVVGVFPPV 95 (98)
T ss_dssp BCCTTCEEEEESCC
T ss_pred CCCCCCEEEEECCC
Confidence 67889988776443
No 264
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=82.17 E-value=1.4 Score=31.77 Aligned_cols=60 Identities=12% Similarity=0.218 Sum_probs=45.4
Q ss_pred CCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 389 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
+|+. .++ ...||.+|-+. .++++...-+..||..+..+ ..++.-+++|+.|.+.-..-||
T Consensus 6 NG~~--~e~-~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~veIv~~VgGG 65 (73)
T 2kl0_A 6 NGEQ--REV-QSASVAALMTE----LDCTGGHFAVALNYDVVPRG-KWDETPVTAGDEIEILTPRQGG 65 (73)
T ss_dssp TTEE--ECC-CCSBHHHHHHH----TTCCSSSCEEEESSSEECHH-HHTTCBCCTTCEEEEECCCCCC
T ss_pred CCEE--EEc-CCCcHHHHHHH----cCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEccccCC
Confidence 3543 445 67899998775 57888888888999988643 3445567789999999888888
No 265
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=82.13 E-value=7.3 Score=29.21 Aligned_cols=65 Identities=15% Similarity=0.247 Sum_probs=44.5
Q ss_pred CCEEEEEecCCchHHHHHHHHhhhcC-C-----C-------CCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 390 GKTITLEVESSDTIDNVKAKIQDKEG-I-----P-------PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 390 g~~~~l~v~~~~tV~~lK~~i~~~~g-i-----p-------~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
|....+++ ...||.+|...+..++. + . .....+.-||+......-+ +.-+++|+.|.+.-...||
T Consensus 16 g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L~~gDeV~i~Ppv~GG 93 (93)
T 3dwg_C 16 GGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAIADGDSVTILPAVAGG 93 (93)
T ss_dssp TTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBCCTTCEEEEEECCTTC
T ss_pred CCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCCCCCCEEEEECCCCCC
Confidence 43334664 56899999999998752 0 1 1135677788887643222 3457889999999999888
No 266
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=80.73 E-value=1.5 Score=35.60 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=32.6
Q ss_pred cEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeec
Q 012759 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (457)
Q Consensus 11 ~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~ 46 (457)
...++.|....|+.++++.|.+..|+|+++|+|+.-
T Consensus 56 ~~~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 56 KYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp SCEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred CcceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 445789999999999999999999999999999874
No 267
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=80.25 E-value=11 Score=28.61 Aligned_cols=71 Identities=24% Similarity=0.263 Sum_probs=56.6
Q ss_pred eEEEEcCCC---cEEEEEecCCCcHHHHHHHHhhhcCCCCcc--ceEeec---cEEccCCCcccccccccccceeEEEE
Q 012759 2 QIFVKTLTG---KTITLEVESSDTIDNVKAKIQDKEGIPPDQ--QRLIFA---GKQLEDGRTLADYNIQKESTLHLVLR 72 (457)
Q Consensus 2 ~i~~~~~~g---~~~~~~v~~~dtv~~ik~ki~~~~gip~~~--q~l~~~---g~~L~~~~tl~~y~i~~~sti~l~~~ 72 (457)
.|+|..++. ...+++|...--|..+..|+-++..++.+. --|.+- -..|.-..||..|+|+..+.+++...
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp~ 99 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTPQ 99 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEEC
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccCC
Confidence 589999775 678899999999999999999999887654 344442 23467778999999999999988653
No 268
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=80.23 E-value=8.2 Score=27.30 Aligned_cols=63 Identities=21% Similarity=0.242 Sum_probs=44.3
Q ss_pred ceEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEecCcccCCCCcccccccccCCcceEEEE
Q 012759 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (457)
Q Consensus 76 ~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~ 148 (457)
.|+|+|.... ....++++...||.+|.+.+ ++++..-.+..||..+..+. -+++|+.|.+...
T Consensus 4 ~m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~ 66 (70)
T 1ryj_A 4 GMKFTVITDD-GKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRV 66 (70)
T ss_dssp CEEEEEEETT-EEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEEC
T ss_pred eEEEEEeCcc-CceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEec
Confidence 4777765332 23456778888999998876 56666677788998886554 5668888877643
No 269
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=79.65 E-value=3.4 Score=29.77 Aligned_cols=59 Identities=14% Similarity=0.218 Sum_probs=43.7
Q ss_pred EEEEEecCCchHHHHHHHHhhhcCCCCCCe--EEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 392 TITLEVESSDTIDNVKAKIQDKEGIPPDQQ--RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q--~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
...++++...||.+|.+.+..... ..... .+..||+....+ .-+++|+.|.+.-..-||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ppv~GG 77 (77)
T 2q5w_D 17 QEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALIPPVSGG 77 (77)
T ss_dssp EEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEECSCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEECCCCCC
Confidence 456777788899999999987641 01223 678899988754 457789999998877777
No 270
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=79.57 E-value=2.1 Score=31.32 Aligned_cols=58 Identities=12% Similarity=0.285 Sum_probs=44.7
Q ss_pred EEEec--CCchHHHHHHHHhhhcCCC-CCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 394 TLEVE--SSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 394 ~l~v~--~~~tV~~lK~~i~~~~gip-~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
..+++ .+.||.+|-+.+ +++ +...-+..||..+..+ ..++.-+++|+.|.+.-..-||
T Consensus 9 ~~e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~~VgGG 69 (78)
T 2k5p_A 9 PSTVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLYFMGGG 69 (78)
T ss_dssp EEECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECCCCCCS
T ss_pred EEEcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEeeecCC
Confidence 44556 778999998764 677 7777788999988654 3555667789999998888887
No 271
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=78.48 E-value=4.9 Score=41.01 Aligned_cols=63 Identities=30% Similarity=0.502 Sum_probs=45.3
Q ss_pred cEEEEEEcCCCCHHHHHHHHhhh--hCCCC------CCeEEEe-cC---c-ccCCC-------------CcccccccccC
Q 012759 87 KTITLEVESSDTIDNVKAKIQDK--EGIPP------DQQRLIF-AG---K-QLEDG-------------RTLADYNIQKE 140 (457)
Q Consensus 87 ~~~~l~v~~~~tV~~lK~~i~~~--~gip~------~~q~L~~-~g---~-~L~d~-------------~tl~~y~i~~~ 140 (457)
..+++.|-.+|||.++|+||-+. .|+|. ++..|-+ .| + .|.|. .||++|+|.+|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 45888899999999999999864 36654 4455554 23 2 25441 58999999999
Q ss_pred CcceEEEEe
Q 012759 141 STLHLVLRL 149 (457)
Q Consensus 141 s~i~l~~~~ 149 (457)
+++-|+.+.
T Consensus 354 a~v~L~p~~ 362 (644)
T 3hm6_X 354 ATVALVPCL 362 (644)
T ss_dssp CEEEEEEC-
T ss_pred cEEEEEecc
Confidence 999876543
No 272
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=77.48 E-value=5.4 Score=27.67 Aligned_cols=60 Identities=13% Similarity=0.312 Sum_probs=43.2
Q ss_pred CCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 389 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
+|+.+ ++ ...||.+|...+ ++++....+..||..+..+ .-.+.-+++|+.|.+.-..-||
T Consensus 5 Ng~~~--~~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~V~GG 64 (64)
T 2cu3_A 5 NGEPR--PL-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVALMQGG 64 (64)
T ss_dssp TTEEE--CC-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEECCCC-
T ss_pred CCEEE--Ec-CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEeecccC
Confidence 45444 55 678999999887 4667777788899988643 2234457889999998887777
No 273
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=77.25 E-value=9.5 Score=38.90 Aligned_cols=65 Identities=28% Similarity=0.486 Sum_probs=46.1
Q ss_pred CceEEEeecCCChHHHHHHHHhhh--hCCC------CCceEEEE-C---Ce-ecCCC-------------CCccccCCCc
Q 012759 162 GKTITLEVESSDTIDNVKAKIQDK--EGIP------PDQQRLIF-A---GK-QLEDG-------------RTLADYNIQK 215 (457)
Q Consensus 162 g~~~~~~v~~~~tV~~lK~~i~~~--~gip------~~~q~L~~-~---g~-~L~d~-------------~tL~~y~I~~ 215 (457)
...+++.|-.-|||.++|++|-+. .|.| +++..|-+ . |+ .|.|. .||++|+|.+
T Consensus 246 ~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 246 SAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp -CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 356889999999999999999764 3554 34555543 2 33 34441 4899999999
Q ss_pred CcEEEEEEEec
Q 012759 216 ESTLHLVLRLR 226 (457)
Q Consensus 216 ~~~i~l~~~~~ 226 (457)
|+++.++.+..
T Consensus 326 ga~v~L~p~~~ 336 (627)
T 3ig3_A 326 GSLVALVPKQV 336 (627)
T ss_dssp TCEEEEEEC--
T ss_pred CceEEEEeccc
Confidence 99999887653
No 274
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=76.70 E-value=4.5 Score=41.28 Aligned_cols=63 Identities=33% Similarity=0.522 Sum_probs=46.1
Q ss_pred cEEEEEecCCCcHHHHHHHHhh--hcCCCCccc------eEee----ccE-EccCC-------------Ccccccccccc
Q 012759 11 KTITLEVESSDTIDNVKAKIQD--KEGIPPDQQ------RLIF----AGK-QLEDG-------------RTLADYNIQKE 64 (457)
Q Consensus 11 ~~~~~~v~~~dtv~~ik~ki~~--~~gip~~~q------~l~~----~g~-~L~~~-------------~tl~~y~i~~~ 64 (457)
..+++.|-..|||..+|+||-+ +.|.|.+++ .|-| .|+ .|.|. +||++|+|.++
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 4688889999999999999965 467776543 3444 233 24441 58999999999
Q ss_pred cceeEEEEe
Q 012759 65 STLHLVLRL 73 (457)
Q Consensus 65 sti~l~~~~ 73 (457)
+++-|+.+.
T Consensus 354 a~v~L~p~~ 362 (644)
T 3hm6_X 354 ATVALVPCL 362 (644)
T ss_dssp CEEEEEEC-
T ss_pred cEEEEEecc
Confidence 999887654
No 275
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=74.68 E-value=11 Score=38.66 Aligned_cols=74 Identities=15% Similarity=0.265 Sum_probs=57.2
Q ss_pred CceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCC-CeEEEEC---C--eEcCCCCcccccCCCCCCEEEEEEe
Q 012759 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~-~q~l~~~---g--~~L~d~~tL~~~~I~~~~~i~l~~r 452 (457)
.++.+.|..++| ++.+.|++++|+.+|-..|+...|+... .+-|.|. | .-|+.+.++.+.++..+....+.+|
T Consensus 3 k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 3 KSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred ceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 457788888888 6889999999999999999999999654 4556652 2 3567778888887777777666665
Q ss_pred c
Q 012759 453 L 453 (457)
Q Consensus 453 ~ 453 (457)
.
T Consensus 82 v 82 (575)
T 2i1j_A 82 A 82 (575)
T ss_dssp E
T ss_pred E
Confidence 3
No 276
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=73.92 E-value=1.2 Score=32.48 Aligned_cols=54 Identities=11% Similarity=0.260 Sum_probs=42.0
Q ss_pred EEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
.+++++..||.+|.+.+ ++++....+..||+....+ .-+++|+.|.+.-..-||
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ppv~GG 77 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIPVVSGG 77 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSCCCCCC
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEcccccC
Confidence 45667789999998876 4677777788899988765 457789999887777776
No 277
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=73.61 E-value=8.7 Score=27.41 Aligned_cols=70 Identities=13% Similarity=0.280 Sum_probs=42.9
Q ss_pred eEEEEEccCCc-EEEEEEcCCCCHHHHHHHHhhhhCCCC--CCeEEEecCcccCCCCcccccccccCCcceEEEEeec
Q 012759 77 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (457)
Q Consensus 77 ~~i~vk~~~g~-~~~l~v~~~~tV~~lK~~i~~~~gip~--~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~~ 151 (457)
|.|+|+.+..- .-.+++ ...||.++.+.+....++.. ..-.+..||+...+ .+.-+++|+.|.+.....|
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~PpvsG 73 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVCG 73 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBCC
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCCC
Confidence 44666654321 124566 56899999999986543322 33456677776443 2456788998888765444
No 278
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=71.94 E-value=16 Score=33.79 Aligned_cols=70 Identities=16% Similarity=0.251 Sum_probs=50.9
Q ss_pred eeEEEEccCCceEEEEeeCCccHHHHHHHHhhhcCCCCCC-eEEEe---CCc--ccCCCccccccccCCCCeEEEEE
Q 012759 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF---AGK--QLEDGRTLADYNIQKESTLHLVL 299 (457)
Q Consensus 229 ~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~-q~L~~---~g~--~L~d~~tl~~~~i~~~~tl~l~~ 299 (457)
+.+.|..++| ++++.+++..|+++|-+.|+++.|+.... .-|.+ +|. -|+..+++.+.+++.+....+..
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~f 77 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKF 77 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEE
Confidence 4566777888 78899999999999999999999996554 34544 232 26778888887666555544433
No 279
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=71.30 E-value=21 Score=26.62 Aligned_cols=48 Identities=10% Similarity=0.193 Sum_probs=37.6
Q ss_pred ceEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCC-eEEEecCc
Q 012759 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGK 124 (457)
Q Consensus 76 ~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~-q~L~~~g~ 124 (457)
.|.|.+ ...|....+.++++.+..+|.+++++..+++..+ -.+.|...
T Consensus 6 ~vkvK~-~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 6 QVRVKA-YYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE 54 (89)
T ss_dssp CEEEEE-ESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred eEEEEE-EeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence 344444 3668899999999999999999999999987644 56767654
No 280
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=71.12 E-value=18 Score=28.38 Aligned_cols=65 Identities=14% Similarity=0.137 Sum_probs=51.8
Q ss_pred EEEEEecCCchHHHHHHHHhhh--------cCCCCCCeEEEECCeEcC--CCCcccccCCCCCCEEEEEEecCCC
Q 012759 392 TITLEVESSDTIDNVKAKIQDK--------EGIPPDQQRLIFAGKQLE--DGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~--------~gip~~~q~l~~~g~~L~--d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
.+.+-|+|.++.++|-+.+-.- ..|+-+.-.|..+|++.. .+++|++-|+..-|.|.+..+-+-|
T Consensus 39 p~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~TPgL~G 113 (119)
T 3u52_E 39 PFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVTTPGLKG 113 (119)
T ss_dssp CEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEECTTCCC
T ss_pred ceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEeCCCcCc
Confidence 5889999999999998776543 356666678999999997 4579999999999998887654433
No 281
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=71.03 E-value=14 Score=27.27 Aligned_cols=62 Identities=13% Similarity=0.254 Sum_probs=42.8
Q ss_pred EEEecCCchHHHHHHHHhhhcC------C-----CCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 394 TLEVESSDTIDNVKAKIQDKEG------I-----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~g------i-----p~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
.++++...||.+|.+.+..... + ......+..||+...... -.+.-+++|+.|.+.-..-||
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~ppv~GG 90 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLFPPVAGG 90 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEECCTTCC
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEEEEeCCCCCC
Confidence 3456667899999999987741 1 113456778888775321 123457889999998888777
No 282
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=71.00 E-value=19 Score=33.65 Aligned_cols=71 Identities=11% Similarity=0.145 Sum_probs=52.7
Q ss_pred CCeeEEEEccCCceEEEEeeCCccHHHHHHHHhhhcCCCCCC-eEEEe--CCcc--cCCCccccccccCCCCeEEEE
Q 012759 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF--AGKQ--LEDGRTLADYNIQKESTLHLV 298 (457)
Q Consensus 227 ~~~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~-q~L~~--~g~~--L~d~~tl~~~~i~~~~tl~l~ 298 (457)
..+.+.|..++| ++.+.+++..|+.+|-..|+++.|+...+ .-|.+ +|.. |+.++++.+..+..+....+.
T Consensus 21 ~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~ 96 (314)
T 1h4r_A 21 KTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFH 96 (314)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEE
T ss_pred CeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEE
Confidence 345677888898 89999999999999999999999997654 33544 3322 777888888776655554443
No 283
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=70.31 E-value=16 Score=27.38 Aligned_cols=41 Identities=12% Similarity=0.225 Sum_probs=34.3
Q ss_pred eCCcEEEEEeecCccHHHHHHHhhhhcCCCCCC-ceEEecCe
Q 012759 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGK 352 (457)
Q Consensus 312 ~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~-q~l~~~g~ 352 (457)
++|..+.+.++++.+.++|.+++++.++++... -.+.|...
T Consensus 13 ~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 13 YRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE 54 (89)
T ss_dssp SSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred eCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence 578899999999999999999999999998665 44557654
No 284
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=69.58 E-value=14 Score=37.71 Aligned_cols=65 Identities=29% Similarity=0.468 Sum_probs=45.9
Q ss_pred CcEEEEEecCCCcHHHHHHHHhhh--cCCCCcc------ceEee----ccE-EccC---------C----Cccccccccc
Q 012759 10 GKTITLEVESSDTIDNVKAKIQDK--EGIPPDQ------QRLIF----AGK-QLED---------G----RTLADYNIQK 63 (457)
Q Consensus 10 g~~~~~~v~~~dtv~~ik~ki~~~--~gip~~~------q~l~~----~g~-~L~~---------~----~tl~~y~i~~ 63 (457)
...+++.|-..|||..+|+||-+. .|.|.++ ..|-| .|+ .|.| + +||++|+|.+
T Consensus 246 ~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 246 SAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp -CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 367888999999999999999664 5666543 34444 233 2433 1 5899999999
Q ss_pred ccceeEEEEec
Q 012759 64 ESTLHLVLRLR 74 (457)
Q Consensus 64 ~sti~l~~~~~ 74 (457)
|+++-|+.+..
T Consensus 326 ga~v~L~p~~~ 336 (627)
T 3ig3_A 326 GSLVALVPKQV 336 (627)
T ss_dssp TCEEEEEEC--
T ss_pred CceEEEEeccc
Confidence 99999987643
No 285
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=69.07 E-value=13 Score=34.66 Aligned_cols=75 Identities=8% Similarity=0.003 Sum_probs=53.5
Q ss_pred cCceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCC-eEEEEC---C--eEcCCCCcccccCCCCCCEEEEEE
Q 012759 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA---G--KQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~-q~l~~~---g--~~L~d~~tL~~~~I~~~~~i~l~~ 451 (457)
...+.+.|..++|....+.|++.+|+.+|-..|+++.|+.... +-|.+. | .-|+.++++.+.......++++..
T Consensus 15 ~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~frv 94 (296)
T 3qij_A 15 YFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFNV 94 (296)
T ss_dssp --CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEEE
T ss_pred CceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEEE
Confidence 3567888999999999999999999999999999999987644 556553 2 346677777776544344555444
Q ss_pred e
Q 012759 452 R 452 (457)
Q Consensus 452 r 452 (457)
+
T Consensus 95 k 95 (296)
T 3qij_A 95 K 95 (296)
T ss_dssp S
T ss_pred E
Confidence 3
No 286
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=68.54 E-value=35 Score=26.69 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=45.5
Q ss_pred ceeeEEEcC------CC--CEEEEEecC---CchHHHHHHHHhhhc-CCC---------CC-CeEEEECCeEcCCCCcc-
Q 012759 380 GMQIFVKTL------TG--KTITLEVES---SDTIDNVKAKIQDKE-GIP---------PD-QQRLIFAGKQLEDGRTL- 436 (457)
Q Consensus 380 ~~~i~v~~~------~g--~~~~l~v~~---~~tV~~lK~~i~~~~-gip---------~~-~q~l~~~g~~L~d~~tL- 436 (457)
+|.|.|+.. .| +.+.++++. ..||.+|...+++.+ +.. .. ...++-||+..+ .|
T Consensus 11 ~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~---~l~ 87 (114)
T 1wgk_A 11 PLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWE---LLG 87 (114)
T ss_dssp CEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHH---HHC
T ss_pred CcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeee---ccC
Confidence 356666543 33 366788884 369999999999886 111 00 122333433211 11
Q ss_pred -cccCCCCCCEEEEEEecCCCC
Q 012759 437 -ADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 437 -~~~~I~~~~~i~l~~r~~GG~ 457 (457)
.++-+++|+.|.+.-.+-||.
T Consensus 88 gldt~L~dGDeV~iip~vaGG~ 109 (114)
T 1wgk_A 88 ELDYQLQDQDSILFISTLHGGS 109 (114)
T ss_dssp TTTCBCCSSEEEEEEECSCCCC
T ss_pred CcCcCCCCCCEEEEeCCCCCCC
Confidence 346788999999988888883
No 287
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=66.57 E-value=35 Score=24.92 Aligned_cols=61 Identities=20% Similarity=0.312 Sum_probs=49.5
Q ss_pred EEEEEecCCchHHHHHHHHhhhc-C--C---CCCCeEEEECC--eEcCCCCcccccCCCCCCEEEEEEe
Q 012759 392 TITLEVESSDTIDNVKAKIQDKE-G--I---PPDQQRLIFAG--KQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~-g--i---p~~~q~l~~~g--~~L~d~~tL~~~~I~~~~~i~l~~r 452 (457)
.+.+-|+..+|+.++=++++... | + |-.-.+..++| ..+..+.|+++.||.+-..|.+...
T Consensus 14 ~~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 14 IQLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence 45678999999999999988764 3 3 22245778899 9999999999999999999988753
No 288
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=65.68 E-value=20 Score=36.75 Aligned_cols=71 Identities=14% Similarity=0.266 Sum_probs=51.8
Q ss_pred CeeEEEEccCCceEEEEeeCCccHHHHHHHHhhhcCCCCCC-eEEEeC---Cc--ccCCCccccccccCCCCeEEEEE
Q 012759 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA---GK--QLEDGRTLADYNIQKESTLHLVL 299 (457)
Q Consensus 228 ~~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~-q~L~~~---g~--~L~d~~tl~~~~i~~~~tl~l~~ 299 (457)
.+.+.|..++| ++.+.++++.|+.+|-..|+.+.||.... .-|.+. |. -|+..+++.+.++..+....|..
T Consensus 4 ~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~F 80 (575)
T 2i1j_A 4 SMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKF 80 (575)
T ss_dssp EEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEE
T ss_pred eEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEE
Confidence 45667778888 78999999999999999999999996554 445552 21 26667788877666665544433
No 289
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=65.51 E-value=13 Score=26.18 Aligned_cols=61 Identities=13% Similarity=0.130 Sum_probs=38.3
Q ss_pred CeEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEE
Q 012759 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~ 70 (457)
|.|.|..++|+. .++....|+.++-..+....+-. .--...+|+..+-+ +.+.+++.+.++
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~~~--~vaa~vNg~lvdl~-----~~L~~~~~Veiv 61 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLGDH--CIGAKVNHKLVPLS-----YVLNSGDQVEVL 61 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHHHT--EEEEEETTEECCTT-----CBCCSSSBEEEE
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccccc--eEEEEECCEEeCCC-----cCcCCCCEEEEE
Confidence 889999999986 46677899999988885432111 11123577765543 334455555543
No 290
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=65.16 E-value=38 Score=26.45 Aligned_cols=76 Identities=16% Similarity=0.138 Sum_probs=44.4
Q ss_pred ceEEEEEccC------C--cEEEEEEcC---CCCHHHHHHHHhhhh-CCC---------CC-CeEEEecCcccCCCCccc
Q 012759 76 GMQIFVKTLT------G--KTITLEVES---SDTIDNVKAKIQDKE-GIP---------PD-QQRLIFAGKQLEDGRTLA 133 (457)
Q Consensus 76 ~~~i~vk~~~------g--~~~~l~v~~---~~tV~~lK~~i~~~~-gip---------~~-~q~L~~~g~~L~d~~tl~ 133 (457)
.|.|+|+.+. | +.+.++++. ..||.+|-+.+.+.. +.. .. ...++.||+..+-- -=.
T Consensus 11 ~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~~l-~gl 89 (114)
T 1wgk_A 11 PLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELL-GEL 89 (114)
T ss_dssp CEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHHHH-CTT
T ss_pred CcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeeecc-CCc
Confidence 3777777542 3 367788884 359999999998765 110 11 12233444321100 012
Q ss_pred ccccccCCcceEEEEeecc
Q 012759 134 DYNIQKESTLHLVLRLRGG 152 (457)
Q Consensus 134 ~y~i~~~s~i~l~~~~~~~ 152 (457)
+|-+++|+.|.+.....||
T Consensus 90 dt~L~dGDeV~iip~vaGG 108 (114)
T 1wgk_A 90 DYQLQDQDSILFISTLHGG 108 (114)
T ss_dssp TCBCCSSEEEEEEECSCCC
T ss_pred CcCCCCCCEEEEeCCCCCC
Confidence 5778899988887666665
No 291
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=62.33 E-value=15 Score=28.10 Aligned_cols=59 Identities=12% Similarity=0.287 Sum_probs=41.2
Q ss_pred EEEEEecCCchHHHHHHHHhhhcCCCCC-----------CeEEEECC-eEcCC------CCcccccCCCCCCEEEEE
Q 012759 392 TITLEVESSDTIDNVKAKIQDKEGIPPD-----------QQRLIFAG-KQLED------GRTLADYNIQKESTLHLV 450 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~gip~~-----------~q~l~~~g-~~L~d------~~tL~~~~I~~~~~i~l~ 450 (457)
...++|+++.|..+|.+.+++.-.+... ...|+..+ ..|+. +++|.+.|+.+|+.|+|+
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 4578999999999999999995433222 23333332 23332 367999999999999886
No 292
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=61.87 E-value=48 Score=24.91 Aligned_cols=65 Identities=15% Similarity=0.250 Sum_probs=40.6
Q ss_pred CEEEEEec--CCchHHHHHHHHhhhcC-CCCC------------CeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCC
Q 012759 391 KTITLEVE--SSDTIDNVKAKIQDKEG-IPPD------------QQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 455 (457)
Q Consensus 391 ~~~~l~v~--~~~tV~~lK~~i~~~~g-ip~~------------~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~G 455 (457)
+...++++ +..||.+|...+.++.. ..+. ...+.-|++..+-... .++-+++|+.|.+.-..-|
T Consensus 20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~-~d~~L~dgDeVa~~Ppv~G 98 (99)
T 2qjl_A 20 RVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGE-KDYILEDGDIISFTSTLHG 98 (99)
T ss_dssp CEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTG-GGCBCCTTCEEEEEECTTC
T ss_pred cEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCC-CCcCcCCCCEEEEECCCCC
Confidence 35667776 67899999999998763 1110 1123445553220000 2456888999999888888
Q ss_pred C
Q 012759 456 G 456 (457)
Q Consensus 456 G 456 (457)
|
T Consensus 99 G 99 (99)
T 2qjl_A 99 G 99 (99)
T ss_dssp C
T ss_pred C
Confidence 7
No 293
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=61.42 E-value=27 Score=25.67 Aligned_cols=37 Identities=14% Similarity=0.180 Sum_probs=31.4
Q ss_pred CceEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCC
Q 012759 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI 112 (457)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gi 112 (457)
+.|.|.+ ...+..+.+.|+++.+..+|+.+|.++..+
T Consensus 11 ~~~KVK~-yy~DDIiAIrvP~di~~~~L~dKi~~RLk~ 47 (85)
T 1ip9_A 11 KTTKIKF-YYKDDIFALMLKGDTTYKELRSKIAPRIDT 47 (85)
T ss_dssp CCEEEEE-CBTTCCEEEEECSCCCHHHHHHHHHHHHTS
T ss_pred CceEEEE-EecCcEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4566666 356789999999999999999999999888
No 294
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=61.05 E-value=28 Score=33.44 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=37.5
Q ss_pred CCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEE
Q 012759 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 49 (457)
Q Consensus 8 ~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~ 49 (457)
.+-....+.+.+.+|+.++++++++..+++++.|.|++.+..
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~ 360 (396)
T 4eut_A 319 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRR 360 (396)
T ss_dssp TTTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSE
T ss_pred ccceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCC
Confidence 445677889999999999999999999999999999998843
No 295
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=60.74 E-value=7.1 Score=41.01 Aligned_cols=51 Identities=31% Similarity=0.602 Sum_probs=42.1
Q ss_pred CCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEC-CeEcCCCCccccc
Q 012759 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADY 439 (457)
Q Consensus 389 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~-g~~L~d~~tL~~~ 439 (457)
..+.+.+.+.++.|+.+++..|++.+|||++.|.+++. |..+++.....+|
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 34556789999999999999999999999999999885 5566666666665
No 296
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=60.70 E-value=39 Score=24.72 Aligned_cols=60 Identities=15% Similarity=0.232 Sum_probs=49.8
Q ss_pred EEEEEecCCchHHHHHHHHhhhc-C--CC--CCCeEEEECCeE--cCCCCcccccCCCCCCEEEEEE
Q 012759 392 TITLEVESSDTIDNVKAKIQDKE-G--IP--PDQQRLIFAGKQ--LEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~-g--ip--~~~q~l~~~g~~--L~d~~tL~~~~I~~~~~i~l~~ 451 (457)
...+-|+..+|+.++=++++... | ++ |.-.+..++|.. +..+.|+++.||++-+.|.+..
T Consensus 16 ~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 16 VQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 46678999999999999988764 3 22 235688899998 9999999999999999998865
No 297
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=58.75 E-value=23 Score=26.06 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=34.0
Q ss_pred CceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEE
Q 012759 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 425 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~ 425 (457)
..|.|.+-.. +..+.+.|+++.+..+|+.+|..+..+. .+.+++
T Consensus 11 ~~~KVK~yy~-DDIiAIrvP~di~~~~L~dKi~~RLk~~--~~~l~~ 54 (85)
T 1ip9_A 11 KTTKIKFYYK-DDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQT 54 (85)
T ss_dssp CCEEEEECBT-TCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEEE
T ss_pred CceEEEEEec-CcEEEEECCCCCCHHHHHHHHHHHhccc--ceEEEE
Confidence 3466666554 4589999999999999999999999883 444443
No 298
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=57.03 E-value=25 Score=32.59 Aligned_cols=72 Identities=8% Similarity=-0.009 Sum_probs=50.1
Q ss_pred CCeeEEEEccCCceEEEEeeCCccHHHHHHHHhhhcCCCCCC-eEEEeC---Cc--ccCCCccccccccCCCCeEEEE
Q 012759 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA---GK--QLEDGRTLADYNIQKESTLHLV 298 (457)
Q Consensus 227 ~~~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~-q~L~~~---g~--~L~d~~tl~~~~i~~~~tl~l~ 298 (457)
..+.+.|..++|...++.+++..|+.+|-..|+++.||.... .-|.+. |. -|+..+++.+.......++++.
T Consensus 16 ~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~fr 93 (296)
T 3qij_A 16 FQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFN 93 (296)
T ss_dssp -CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEE
T ss_pred ceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEE
Confidence 346778889999999999999999999999999999986554 445543 21 2566777766543223344443
No 299
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=56.54 E-value=26 Score=26.73 Aligned_cols=41 Identities=17% Similarity=0.136 Sum_probs=34.2
Q ss_pred CceEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCC
Q 012759 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 115 (457)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~ 115 (457)
+..-|.|-..+|+.-.+.|++.+|++++-+.+..+.+...+
T Consensus 8 ~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~ 48 (100)
T 1wgr_A 8 RPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSD 48 (100)
T ss_dssp SCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCC
T ss_pred CCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCC
Confidence 34556666789999999999999999999999999876543
No 300
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=55.60 E-value=19 Score=34.63 Aligned_cols=52 Identities=21% Similarity=0.328 Sum_probs=40.8
Q ss_pred CCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEc--CCCCcccccC
Q 012759 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL--EDGRTLADYN 440 (457)
Q Consensus 389 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L--~d~~tL~~~~ 440 (457)
.-..+.+.+++..|+.++++.+++.+++++++|.+.+.+..+ +....-..|.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~ 373 (396)
T 4eut_A 320 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFP 373 (396)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSC
T ss_pred cceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCC
Confidence 344677888999999999999999999999999999988433 3344444443
No 301
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=54.03 E-value=9.5 Score=29.37 Aligned_cols=70 Identities=24% Similarity=0.350 Sum_probs=54.0
Q ss_pred eEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCcc--ceEeec---cEEccCCCcccccccccccceeEEEE
Q 012759 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ--QRLIFA---GKQLEDGRTLADYNIQKESTLHLVLR 72 (457)
Q Consensus 2 ~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~--q~l~~~---g~~L~~~~tl~~y~i~~~sti~l~~~ 72 (457)
.|+|..++ ...+++|...--|..+..|+-++..++.+. --|.+- -..|.-..||..|+|+..+.+++...
T Consensus 28 ~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ftp~ 102 (112)
T 2lgx_A 28 SVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFTPQ 102 (112)
T ss_dssp ECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBBC-
T ss_pred EEEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceecCC
Confidence 35666665 788899998899999999999998887654 345553 23467778999999999999888643
No 302
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=53.54 E-value=28 Score=26.57 Aligned_cols=70 Identities=17% Similarity=0.192 Sum_probs=49.3
Q ss_pred ceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEE-------CCeEcCCCCc----ccccCCCCCCEEE
Q 012759 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRT----LADYNIQKESTLH 448 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~-------~g~~L~d~~t----L~~~~I~~~~~i~ 448 (457)
+..|.|-..+|...++.|++++|+.++-+.++.+.+...+.-.=++ --+.++|... ++...+..+..+.
T Consensus 9 k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~~ 88 (100)
T 1wgr_A 9 PHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRFV 88 (100)
T ss_dssp CEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEEE
T ss_pred CEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEEE
Confidence 3455666688999999999999999999999999987755543222 2356777764 4445555555554
Q ss_pred E
Q 012759 449 L 449 (457)
Q Consensus 449 l 449 (457)
.
T Consensus 89 F 89 (100)
T 1wgr_A 89 F 89 (100)
T ss_dssp E
T ss_pred E
Confidence 4
No 303
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=53.26 E-value=17 Score=25.99 Aligned_cols=57 Identities=5% Similarity=0.156 Sum_probs=40.3
Q ss_pred eCCcEEEEEeecCccHHHHHHHhhhhcCCCCCCceEEecCeeccCCCcccccccccCceEEEEEE
Q 012759 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376 (457)
Q Consensus 312 ~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~l~l~~~ 376 (457)
.||+.+.+ +..|+.+|-+ .+++++..--...+|..++.+. +.+.-++.|+.+.++..
T Consensus 5 vNG~~~e~---~~~Tl~~LL~----~l~~~~~~vAV~vNg~iVpr~~-~~~~~L~dGD~veIv~~ 61 (73)
T 2kl0_A 5 INGEQREV---QSASVAALMT----ELDCTGGHFAVALNYDVVPRGK-WDETPVTAGDEIEILTP 61 (73)
T ss_dssp ETTEEECC---CCSBHHHHHH----HTTCCSSSCEEEESSSEECHHH-HTTCBCCTTCEEEEECC
T ss_pred ECCEEEEc---CCCcHHHHHH----HcCCCCCcEEEEECCEECChHH-cCcccCCCCCEEEEEcc
Confidence 56776554 6799999955 4577777656668888775443 56677888898888743
No 304
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=52.76 E-value=59 Score=24.43 Aligned_cols=73 Identities=12% Similarity=0.163 Sum_probs=40.5
Q ss_pred eEEEEEcc------C-C-cEEEEEEc--CCCCHHHHHHHHhhhhCCCCC-------------CeEEEecCcccCCCCccc
Q 012759 77 MQIFVKTL------T-G-KTITLEVE--SSDTIDNVKAKIQDKEGIPPD-------------QQRLIFAGKQLEDGRTLA 133 (457)
Q Consensus 77 ~~i~vk~~------~-g-~~~~l~v~--~~~tV~~lK~~i~~~~gip~~-------------~q~L~~~g~~L~d~~tl~ 133 (457)
|.|+|+.+ . | +...++++ ...||.++.+.+.++..-... .-.+..||+..+-.. =.
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~-~~ 80 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEG-EK 80 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGT-GG
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccC-CC
Confidence 56666632 2 2 45677776 678999999999876531110 012334443211000 02
Q ss_pred ccccccCCcceEEEEee
Q 012759 134 DYNIQKESTLHLVLRLR 150 (457)
Q Consensus 134 ~y~i~~~s~i~l~~~~~ 150 (457)
++-+++|++|.+.....
T Consensus 81 d~~L~dgDeVa~~Ppv~ 97 (99)
T 2qjl_A 81 DYILEDGDIISFTSTLH 97 (99)
T ss_dssp GCBCCTTCEEEEEECTT
T ss_pred CcCcCCCCEEEEECCCC
Confidence 46688888877765433
No 305
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=52.23 E-value=41 Score=23.38 Aligned_cols=62 Identities=10% Similarity=0.058 Sum_probs=39.4
Q ss_pred eeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEE
Q 012759 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~ 451 (457)
|.+.|...+|+. .+++.+.|+.++-..+.... +....-...+|+..+-+.. +++|+.|.+.-
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l--~~~~vaa~vNg~lvdl~~~-----L~~~~~Veivt 62 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDL--GDHCIGAKVNHKLVPLSYV-----LNSGDQVEVLS 62 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHH--HHTEEEEEETTEECCTTCB-----CCSSSBEEEEE
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhcc--ccceEEEEECCEEeCCCcC-----cCCCCEEEEEE
Confidence 567777777865 56778999999988874332 1222333468876655433 44577776654
No 306
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=52.18 E-value=28 Score=24.92 Aligned_cols=54 Identities=4% Similarity=0.095 Sum_probs=37.2
Q ss_pred eEEEEeeCCccHHHHHHHHhhhcC-----CCCCCeEEEeCCcccCCCccccccccCCCCeEEEEE
Q 012759 240 TITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 299 (457)
Q Consensus 240 ~~~~~v~~~~tV~~lK~~I~~~~~-----ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~ 299 (457)
..+++ .+..||.+|.+.+..+++ ++.....+..||+... .+..+++|+.+.++.
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~-----~~~~l~~gD~V~i~P 76 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVS-----FDHPLTDGDEVAFFP 76 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECC-----TTCBCCTTCEEEEEC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECC-----CCCCCCCCCEEEEeC
Confidence 45555 567799999999886643 3333456667887654 255789999987763
No 307
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=52.16 E-value=74 Score=24.06 Aligned_cols=71 Identities=24% Similarity=0.291 Sum_probs=54.2
Q ss_pred eeEEEEccCC---ceEEEEeeCCccHHHHHHHHhhhcCCCCC--CeEEEeCC---cccCCCccccccccCCCCeEEEEE
Q 012759 229 MQIFVKTLTG---KTITLEVESSDTIDNVKAKIQDKEGIPPD--QQRLIFAG---KQLEDGRTLADYNIQKESTLHLVL 299 (457)
Q Consensus 229 ~~i~V~~~~g---~~~~~~v~~~~tV~~lK~~I~~~~~ip~~--~q~L~~~g---~~L~d~~tl~~~~i~~~~tl~l~~ 299 (457)
..|+|...+. ..+++.|....-|+.|..++-++..++.+ .+.|-.-. +.+.-..||..|||+..+.+++-.
T Consensus 20 L~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp 98 (102)
T 2kmc_A 20 LVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred EEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence 3566777553 46778888889999999999988776444 67776643 347889999999999999987754
No 308
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=51.32 E-value=56 Score=23.80 Aligned_cols=59 Identities=12% Similarity=0.179 Sum_probs=40.7
Q ss_pred ceEEEeecCCChHHHHHHHHhhhhC-C-----C-----CCceEEEECCeecCCCCCccccCCCcCcEEEEEEEec
Q 012759 163 KTITLEVESSDTIDNVKAKIQDKEG-I-----P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (457)
Q Consensus 163 ~~~~~~v~~~~tV~~lK~~i~~~~g-i-----p-----~~~q~L~~~g~~L~d~~tL~~y~I~~~~~i~l~~~~~ 226 (457)
....++++...||.+|.+.+..+.. + . .....+.-+|+.... ++-+++|+.|.++....
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~ 87 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVS 87 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCS
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCC
Confidence 5667888888899999999977642 1 1 012456667776654 56688899998775443
No 309
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=51.32 E-value=22 Score=27.05 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=31.3
Q ss_pred CceEEEEEccC-------CcEEEEEEcCCCCHHHHHHHHhhhhCCC
Q 012759 75 GGMQIFVKTLT-------GKTITLEVESSDTIDNVKAKIQDKEGIP 113 (457)
Q Consensus 75 ~~~~i~vk~~~-------g~~~~l~v~~~~tV~~lK~~i~~~~gip 113 (457)
+.+.|.|...+ +..+.+-|+++.+..+|..+|.++.+++
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 44666666442 5679999999999999999999998865
No 310
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=50.50 E-value=28 Score=26.82 Aligned_cols=65 Identities=9% Similarity=0.223 Sum_probs=47.6
Q ss_pred CCcEEEEEeecCccHHHHHHHhhhhcCCCCCCceEE---ecCee--ccCCCcccccccccCceEEEEEEe
Q 012759 313 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQ--LEDGRTLADYNIQKESTLHLVLRL 377 (457)
Q Consensus 313 ~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~---~~g~~--L~d~~~l~~~~i~~~~~l~l~~~~ 377 (457)
+..-.++.++.+.|+.+++..+.++.+...+.+.|+ ++|.. |+++..-..-.+..+..|++..+.
T Consensus 18 Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~kd 87 (104)
T 1wgy_A 18 EHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRKD 87 (104)
T ss_dssp SSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEECC
T ss_pred cCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeehH
Confidence 334556889999999999999999999887777777 45643 555544444456677888887653
No 311
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=48.08 E-value=63 Score=23.84 Aligned_cols=65 Identities=11% Similarity=0.151 Sum_probs=41.8
Q ss_pred cceeeeEeeccCceEEEeecCC-ChHHHHHHHHhhhhCCCCCceEEEECCeecCCCCCccccCCCcCcEEEEEEEe
Q 012759 151 GGMQIFVKTLTGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (457)
Q Consensus 151 ~~~~i~vk~~~g~~~~~~v~~~-~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~y~I~~~~~i~l~~~~ 225 (457)
..|.|.| +|+. ++++.. .||.+|.+.+ ++++....+..+|+....+ ...++-+++|+.|.++...
T Consensus 19 ~~M~I~v---NGe~--~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~V 84 (87)
T 1tyg_B 19 GRHMLQL---NGKD--VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHFV 84 (87)
T ss_dssp ---CEEE---TTEE--ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEEC
T ss_pred cceEEEE---CCEE--EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEccc
Confidence 3455555 4554 445665 8999998876 4666666677888876432 3345679999999887543
No 312
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=47.38 E-value=47 Score=25.50 Aligned_cols=70 Identities=10% Similarity=0.218 Sum_probs=47.9
Q ss_pred EEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEE---ecCcc--cCCCCcccccccccCCcceEEEE
Q 012759 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQ--LEDGRTLADYNIQKESTLHLVLR 148 (457)
Q Consensus 79 i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~---~~g~~--L~d~~tl~~y~i~~~s~i~l~~~ 148 (457)
..|-..+..-+++.+..+.|+.+++..++++.+...+.+.|. ++|.. |+++..--.-.+.-+..|++..+
T Consensus 12 ~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 12 CHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp EEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred EEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 344455667788889999999999999999999877677776 67754 34443333333445565665544
No 313
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=47.38 E-value=42 Score=26.73 Aligned_cols=56 Identities=21% Similarity=0.313 Sum_probs=38.7
Q ss_pred EEEecC----CchHHHHHHHHhhhcCCCCCCeEEEE--CCeEcC-----C--CCcccccCCCCCCEEEEE
Q 012759 394 TLEVES----SDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLE-----D--GRTLADYNIQKESTLHLV 450 (457)
Q Consensus 394 ~l~v~~----~~tV~~lK~~i~~~~gip~~~q~l~~--~g~~L~-----d--~~tL~~~~I~~~~~i~l~ 450 (457)
.+.|++ ..|..+|-..+..++|.+. ...+.- +.+.|- | +++|+++|+++|+.|.+.
T Consensus 9 vl~v~~~dl~~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~ 77 (127)
T 3onh_A 9 VIKLSSDCLNKMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFS 77 (127)
T ss_dssp EEEECHHHHHHCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEE
T ss_pred EEEeCcccccccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEE
Confidence 345553 4589998888888888764 455442 234442 2 369999999999998775
No 314
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=46.76 E-value=39 Score=23.09 Aligned_cols=57 Identities=12% Similarity=0.255 Sum_probs=38.5
Q ss_pred eCCcEEEEEeecCccHHHHHHHhhhhcCCCCCCceEEecCeeccCCCcccccccccCceEEEEEE
Q 012759 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376 (457)
Q Consensus 312 ~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~l~l~~~ 376 (457)
.||+.+. + +..|+.+|.+.+ ++++..-....+|...+.+. ..+..+..++.+.+.+.
T Consensus 4 vNg~~~~--~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~~-~~~~~L~dgD~v~i~~~ 60 (64)
T 2cu3_A 4 LNGEPRP--L-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGLE-VPDRPLRDGDVVEVVAL 60 (64)
T ss_dssp ETTEEEC--C-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGGG-CCCCCCCTTCEEEEEEC
T ss_pred ECCEEEE--c-CCCcHHHHHHHc----CCCCCcEEEEECCEECCccc-cCCcCCCCCCEEEEEee
Confidence 5777665 4 678999998876 45555444557777765432 44566888888888753
No 315
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=46.06 E-value=18 Score=26.24 Aligned_cols=59 Identities=12% Similarity=0.233 Sum_probs=39.5
Q ss_pred eCCcEEEEEeecCccHHHHHHHhhhhcCCC-CCCceEEecCeeccCCCcccccccccCceEEEEE
Q 012759 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 375 (457)
Q Consensus 312 ~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip-~~~q~l~~~g~~L~d~~~l~~~~i~~~~~l~l~~ 375 (457)
.||+.+.+....+.|+.+|-+. ++++ +..--...+|..++.+. +.+..+..|+.+.++.
T Consensus 5 vNGe~~e~~~~~~~Tl~~LL~~----l~~~~~~~vAVavNg~iVpr~~-~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 5 VNGKPSTVDGAESLNVTELLSA----LKVAQAEYVTVELNGEVLEREA-FDATTVKDGDAVEFLY 64 (78)
T ss_dssp ETTEEEECSSCSCEEHHHHHHH----HTCSCTTTCCEEETTEECCTTH-HHHCEECSSBCEEECC
T ss_pred ECCEEEEcCCCCCCcHHHHHHH----cCCCCCCcEEEEECCEECChHH-cCcccCCCCCEEEEEe
Confidence 5677554322167999999654 4666 65545668888776543 5667788888888764
No 316
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=43.66 E-value=19 Score=37.75 Aligned_cols=52 Identities=29% Similarity=0.569 Sum_probs=41.1
Q ss_pred eCCcEEEEEeecCccHHHHHHHhhhhcCCCCCCceEEecCe-eccCCCccccc
Q 012759 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-QLEDGRTLADY 363 (457)
Q Consensus 312 ~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~-~L~d~~~l~~~ 363 (457)
...+.+++.++++.|+.+++..|++.||||++.|.+.+..+ .+++......|
T Consensus 319 ~~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 319 VSGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred cccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 34556678899999999999999999999999999996544 45555555544
No 317
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=41.46 E-value=23 Score=27.61 Aligned_cols=76 Identities=16% Similarity=0.281 Sum_probs=41.6
Q ss_pred CeeEEEEccC------CceEEEEeeC----CccHHHHHHHHhhhcCCCCCCeEEE-eCC--c------ccCCCccc----
Q 012759 228 GMQIFVKTLT------GKTITLEVES----SDTIDNVKAKIQDKEGIPPDQQRLI-FAG--K------QLEDGRTL---- 284 (457)
Q Consensus 228 ~~~i~V~~~~------g~~~~~~v~~----~~tV~~lK~~I~~~~~ip~~~q~L~-~~g--~------~L~d~~tl---- 284 (457)
.|.|.|+... |+...+++.. ..||++|-+.+.+++. ...-.|. -+| . .|-+++..
T Consensus 4 ~m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~--~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~ 81 (110)
T 2k9x_A 4 HNHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYV--KERPDLLVDQTGQTLRPGILVLVNSCDAEVVG 81 (110)
T ss_dssp SSCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTC--CSCHHHHBCSSSSSBCTTEEEEESSSBHHHHT
T ss_pred ccEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHcc--ccchhhEecCCCcccCCCeEEEECCeeeeccC
Confidence 3455555432 4555667663 2499999999988752 1111111 112 1 12222222
Q ss_pred -cccccCCCCeEEEEEeecCce
Q 012759 285 -ADYNIQKESTLHLVLRLRGGM 305 (457)
Q Consensus 285 -~~~~i~~~~tl~l~~~~~~~~ 305 (457)
.+|.++++|.+.++...+++.
T Consensus 82 gldt~L~dgD~V~fistlhg~~ 103 (110)
T 2k9x_A 82 GMDYVLNDGDTVEFISTLHGGL 103 (110)
T ss_dssp SSCCCCCSSCEEEEEECCCCC-
T ss_pred CcccCCCCcCEEEEeCCCcccc
Confidence 357799999987776655543
No 318
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=41.10 E-value=96 Score=23.95 Aligned_cols=61 Identities=15% Similarity=0.204 Sum_probs=43.0
Q ss_pred eEEEEccCCceEEEEeeCCccHHHHHHHHhhhcC--------CCCCCeEEEe-C--Cc--cc-CCCccccccccC
Q 012759 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIF-A--GK--QL-EDGRTLADYNIQ 290 (457)
Q Consensus 230 ~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~--------ip~~~q~L~~-~--g~--~L-~d~~tl~~~~i~ 290 (457)
.+..-.++|-.+.+++....|+.++|+.+.+..+ -.++.|.+.. + |+ ++ ++++-|.+...-
T Consensus 21 ~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf 95 (108)
T 2v1y_A 21 LVECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF 95 (108)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS
T ss_pred EEEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc
Confidence 3444456788889999999999999999887633 3677777776 2 22 24 566777765544
No 319
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=39.01 E-value=1.1e+02 Score=22.34 Aligned_cols=60 Identities=10% Similarity=0.136 Sum_probs=37.7
Q ss_pred EEeecCCChHHHHHHHHhhhhCC------C-------CCceEEEECCeecCCCCCccccCCCcCcEEEEEEEecC
Q 012759 166 TLEVESSDTIDNVKAKIQDKEGI------P-------PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (457)
Q Consensus 166 ~~~v~~~~tV~~lK~~i~~~~gi------p-------~~~q~L~~~g~~L~d~~tL~~y~I~~~~~i~l~~~~~~ 227 (457)
.+++ ...||.+|.+.+..++.- . .....+.-+|+....... .++-+++|++|.++....+
T Consensus 20 ~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L~~gDeV~i~Ppv~G 92 (93)
T 3dwg_C 20 SVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAIADGDSVTILPAVAG 92 (93)
T ss_dssp EEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBCCTTCEEEEEECCTT
T ss_pred EEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCCCCCCEEEEECCCCC
Confidence 3554 457999999999876520 1 112455667776553221 3567899999988765444
No 320
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=37.93 E-value=26 Score=25.37 Aligned_cols=26 Identities=27% Similarity=0.199 Sum_probs=23.8
Q ss_pred EEEEEeecCccHHHHHHHhhhhcCCC
Q 012759 316 TITLEVESSDTIDNVKAKIQDKEGIP 341 (457)
Q Consensus 316 ~~~l~v~~~~Tv~~lK~~I~~~~~ip 341 (457)
.+++.|+++.+..+|..+|..+++++
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHccc
Confidence 57799999999999999999999875
No 321
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=37.70 E-value=18 Score=28.18 Aligned_cols=75 Identities=16% Similarity=0.287 Sum_probs=44.5
Q ss_pred ceeeEEEcC------CCCEEEEEecC----CchHHHHHHHHhhhcCCCCCCeEEE-ECC--e------EcCCCCc---c-
Q 012759 380 GMQIFVKTL------TGKTITLEVES----SDTIDNVKAKIQDKEGIPPDQQRLI-FAG--K------QLEDGRT---L- 436 (457)
Q Consensus 380 ~~~i~v~~~------~g~~~~l~v~~----~~tV~~lK~~i~~~~gip~~~q~l~-~~g--~------~L~d~~t---L- 436 (457)
+|+|.|+.. -|+.+.++++. ..||.+|-..+++.. +...-+++ -+| . .|-|+.- |
T Consensus 4 ~m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~--~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~ 81 (110)
T 2k9x_A 4 HNHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNY--VKERPDLLVDQTGQTLRPGILVLVNSCDAEVVG 81 (110)
T ss_dssp SSCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTT--CCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHT
T ss_pred ccEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHc--cccchhhEecCCCcccCCCeEEEECCeeeeccC
Confidence 355555532 34556677773 249999999998875 22222222 122 1 2223322 1
Q ss_pred -cccCCCCCCEEEEEEecCCC
Q 012759 437 -ADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 437 -~~~~I~~~~~i~l~~r~~GG 456 (457)
.+|-+++|+.|.+...+-||
T Consensus 82 gldt~L~dgD~V~fistlhg~ 102 (110)
T 2k9x_A 82 GMDYVLNDGDTVEFISTLHGG 102 (110)
T ss_dssp SSCCCCCSSCEEEEEECCCCC
T ss_pred CcccCCCCcCEEEEeCCCccc
Confidence 35778999999998878777
No 322
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=37.59 E-value=35 Score=25.90 Aligned_cols=38 Identities=18% Similarity=0.133 Sum_probs=30.9
Q ss_pred ceeeEEEcCC-------CCEEEEEecCCchHHHHHHHHhhhcCCC
Q 012759 380 GMQIFVKTLT-------GKTITLEVESSDTIDNVKAKIQDKEGIP 417 (457)
Q Consensus 380 ~~~i~v~~~~-------g~~~~l~v~~~~tV~~lK~~i~~~~gip 417 (457)
.+.|.+...+ +..+.+-|+++.+..+|..+|.++.+++
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 3556666542 5578999999999999999999999876
No 323
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=37.04 E-value=55 Score=23.01 Aligned_cols=55 Identities=11% Similarity=0.137 Sum_probs=37.4
Q ss_pred ceEEEEeeCCccHHHHHHHHhhhcCCCCCCe--EEEeCCcccCCCccccccccCCCCeEEEEE
Q 012759 239 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ--RLIFAGKQLEDGRTLADYNIQKESTLHLVL 299 (457)
Q Consensus 239 ~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q--~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~ 299 (457)
....+++.+..||.+|.+.+..+++- ...- .+..||+.... +..+++||.+.++.
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p~-~~~v~~~v~vNg~~v~~-----~~~L~~gD~V~i~p 72 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYPQ-INNKKFQVAVNEEFVQK-----SDFIQPNDTVALIP 72 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCGG-GTTCCCEEEETTEEECT-----TSEECTTCEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCcc-hhcceEEEEECCEECCC-----CCCcCCCCEEEEEC
Confidence 35567777888999999998776420 1222 56668876653 35788999887653
No 324
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=36.62 E-value=1.2e+02 Score=22.06 Aligned_cols=60 Identities=18% Similarity=0.279 Sum_probs=47.5
Q ss_pred EEEEEEcCCCCHHHHHHHHhhhh-C--CC---CCCeEEEecC--cccCCCCcccccccccCCcceEEE
Q 012759 88 TITLEVESSDTIDNVKAKIQDKE-G--IP---PDQQRLIFAG--KQLEDGRTLADYNIQKESTLHLVL 147 (457)
Q Consensus 88 ~~~l~v~~~~tV~~lK~~i~~~~-g--ip---~~~q~L~~~g--~~L~d~~tl~~y~i~~~s~i~l~~ 147 (457)
...+.|+..+|+.++=++++... | ++ ....++.++| +.+..+.|+++-+|.+-..|.+..
T Consensus 14 ~~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~ 81 (83)
T 2inc_C 14 IQLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIF 81 (83)
T ss_dssp EEEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEE
Confidence 35678999999999999998643 4 32 2346778999 889999999999999888777654
No 325
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=36.55 E-value=50 Score=26.07 Aligned_cols=58 Identities=12% Similarity=0.143 Sum_probs=40.3
Q ss_pred EEEecCCchHHHHHHHHhhhcCCCCCCe-EEEECCeEcCCCCccccc---CCCCCCEEEEEE
Q 012759 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLADY---NIQKESTLHLVL 451 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~gip~~~q-~l~~~g~~L~d~~tL~~~---~I~~~~~i~l~~ 451 (457)
.+-|+.+.||+++...|..+.++++++- -|+-++.....+.++++. .=.++.-|+++.
T Consensus 51 KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~DGfLyv~Y 112 (119)
T 3h9d_A 51 KFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKY 112 (119)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred eEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHHHHHcCCCCCeEEEEE
Confidence 3578999999999999999999998874 455577755556665442 222333466554
No 326
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=36.27 E-value=62 Score=32.84 Aligned_cols=46 Identities=17% Similarity=0.127 Sum_probs=39.4
Q ss_pred ceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCC--CCeEEEE
Q 012759 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIF 425 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~--~~q~l~~ 425 (457)
++.+.|..++|....+.+++.+|+.+|-..|+.+.|+.. +.+-|++
T Consensus 216 ~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 216 EMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp CEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred CcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 466777788999999999999999999999999999974 4566665
No 327
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=36.23 E-value=1.3e+02 Score=22.22 Aligned_cols=53 Identities=13% Similarity=0.121 Sum_probs=34.5
Q ss_pred eeEEEcCCCC-EEEEEecC-CchHHHHHHHHhhhcCCCCCCeEEE-EC---CeEcCCCC
Q 012759 382 QIFVKTLTGK-TITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLI-FA---GKQLEDGR 434 (457)
Q Consensus 382 ~i~v~~~~g~-~~~l~v~~-~~tV~~lK~~i~~~~gip~~~q~l~-~~---g~~L~d~~ 434 (457)
.|+-+..+.+ ...+.++. ..+|.+||..|..+.++-...+-|. ++ |.+..|+.
T Consensus 8 ~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~i~na~T~eeY~Dd~ 66 (86)
T 2c7h_A 8 CVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTKEEYTDDN 66 (86)
T ss_dssp EEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEEEEESSSCCEECSTT
T ss_pred EEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEEEeCCCCCCccCCCc
Confidence 4555654433 45677774 5599999999999988866666554 33 33444443
No 328
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=35.53 E-value=68 Score=24.10 Aligned_cols=74 Identities=14% Similarity=0.249 Sum_probs=45.3
Q ss_pred ceeeEEEcC------CCCEEEEEecCCchHHHHHHHHhhhcC-CCC---------CCe-------EEEECCeEcCCCCcc
Q 012759 380 GMQIFVKTL------TGKTITLEVESSDTIDNVKAKIQDKEG-IPP---------DQQ-------RLIFAGKQLEDGRTL 436 (457)
Q Consensus 380 ~~~i~v~~~------~g~~~~l~v~~~~tV~~lK~~i~~~~g-ip~---------~~q-------~l~~~g~~L~d~~tL 436 (457)
+|+|.|+.. .|. ..++++ ..||.+|.+.+..... +.. ... .+..||+...... -
T Consensus 3 mm~v~V~~fa~lr~~~g~-~~~~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~-~ 79 (99)
T 2l52_A 3 MAEVKVKLFANLREAAGT-PELPLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE-G 79 (99)
T ss_dssp CCEEEEEECTHHHHHHSS-SEEEEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-S
T ss_pred ceEEEEEEeHHHHHHhCC-CeEEEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-C
Confidence 356666643 232 233444 6899999999987741 111 012 5677887664221 1
Q ss_pred cccCCCCCCEEEEEEecCCC
Q 012759 437 ADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 437 ~~~~I~~~~~i~l~~r~~GG 456 (457)
.+.-+++|+.|.+.-..-||
T Consensus 80 ~~~~L~~gD~V~i~ppv~GG 99 (99)
T 2l52_A 80 LETLLKDSDEIGILPPVSGG 99 (99)
T ss_dssp TTSCCCTTEEEEEECCCSCC
T ss_pred CCCCCCCCCEEEEECCCCCC
Confidence 23457889999998887777
No 329
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=35.48 E-value=98 Score=24.76 Aligned_cols=43 Identities=9% Similarity=0.189 Sum_probs=33.6
Q ss_pred EEEeeCCccHHHHHHHHhhhcCCCCCCeEEE-eCCccc-CCCccc
Q 012759 242 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQL-EDGRTL 284 (457)
Q Consensus 242 ~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~-~~g~~L-~d~~tl 284 (457)
.+-|.+..||+++...|.++.++++++-.++ |.+..+ ..+.++
T Consensus 56 KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m 100 (130)
T 2zjd_A 56 KFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPI 100 (130)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBH
T ss_pred EEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchH
Confidence 4568899999999999999999999987767 766544 334444
No 330
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=34.98 E-value=1.1e+02 Score=23.13 Aligned_cols=69 Identities=7% Similarity=0.042 Sum_probs=45.7
Q ss_pred ceeeEEEcC-C--CCEEEEEecCCchHHHHHHHHhhh---cCCCCCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEec
Q 012759 380 GMQIFVKTL-T--GKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 453 (457)
Q Consensus 380 ~~~i~v~~~-~--g~~~~l~v~~~~tV~~lK~~i~~~---~gip~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~ 453 (457)
.|.|.|.+. . .....++++++.||.++-+...-. ..|......+-.+|+.... +.-+++|+.|.+.-.+
T Consensus 12 ~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~-----d~~L~dGDRVEIyrpl 86 (97)
T 2hj1_A 12 QINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKL-----TDVLKEGDRIEIYRPL 86 (97)
T ss_dssp EEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCT-----TCBCCTTCEEEECCCC
T ss_pred eEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECCC-----CccCCCCCEEEEEecc
Confidence 455555432 2 235677899999999998887542 2455556677788888774 3446679988876443
No 331
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=34.13 E-value=97 Score=22.38 Aligned_cols=64 Identities=20% Similarity=0.256 Sum_probs=54.3
Q ss_pred EEEEecCCchHHHHHHHHhhhcCCCCCCeEEE-ECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 393 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 393 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~-~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
..+.|+.......+-...++.+.+|+..--++ -+|.-++..+|-...-++.||.+.+.-|-|=|
T Consensus 26 kvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDRVG 90 (92)
T 1j0g_A 26 KVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVG 90 (92)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCSSC
T ss_pred eEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEeccccccc
Confidence 56789999989999899999999999876554 47888999999888888999999999887655
No 332
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=34.09 E-value=58 Score=25.18 Aligned_cols=32 Identities=19% Similarity=0.186 Sum_probs=27.2
Q ss_pred eeEEEeeCCcEEEEEeecCccHHHHHHHhhhh
Q 012759 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 337 (457)
Q Consensus 306 ~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~ 337 (457)
.+.+=.+||-.++++++.++|+.++|+.+.+.
T Consensus 21 ~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~e 52 (108)
T 2v1y_A 21 LVECLLPNGMIVTLECLREATLITIKHELFKE 52 (108)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHHHHHHHH
T ss_pred EEEEEcCcEEEEEEEeeccccHHHHHHHHHHH
Confidence 45555788888999999999999999998775
No 333
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=33.71 E-value=94 Score=24.73 Aligned_cols=52 Identities=21% Similarity=0.261 Sum_probs=36.5
Q ss_pred CChHHHHHHHHhhhhCCCCCceEEEE--CCeecC-----C--CCCccccCCCcCcEEEEEEE
Q 012759 172 SDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLE-----D--GRTLADYNIQKESTLHLVLR 224 (457)
Q Consensus 172 ~~tV~~lK~~i~~~~gip~~~q~L~~--~g~~L~-----d--~~tL~~y~I~~~~~i~l~~~ 224 (457)
..|..+|-+.++.+.|.+. ...+.- ..+.|- | +++|++.|+..|+.+.+.-.
T Consensus 19 ~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~DE 79 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSDE 79 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEES
T ss_pred ccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEcc
Confidence 4588888888888888764 333332 234442 2 58999999999999977653
No 334
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=33.04 E-value=68 Score=24.30 Aligned_cols=61 Identities=11% Similarity=0.245 Sum_probs=40.9
Q ss_pred ceEEEeecCCChHHHHHHHHhhhhCCCCC-----------ceEEEECC-eecCC------CCCccccCCCcCcEEEEEE
Q 012759 163 KTITLEVESSDTIDNVKAKIQDKEGIPPD-----------QQRLIFAG-KQLED------GRTLADYNIQKESTLHLVL 223 (457)
Q Consensus 163 ~~~~~~v~~~~tV~~lK~~i~~~~gip~~-----------~q~L~~~g-~~L~d------~~tL~~y~I~~~~~i~l~~ 223 (457)
....++++++.|..++.+.+.+.-.+... ...|.+.+ ..|+. +++|.+.|+.+|..|++..
T Consensus 5 ~~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~VtD 83 (98)
T 1y8x_B 5 LPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVAD 83 (98)
T ss_dssp CCCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEEC
T ss_pred CcEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEEC
Confidence 35578899999999999999875332222 22333332 22322 5789999999999988753
No 335
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=32.84 E-value=45 Score=22.88 Aligned_cols=59 Identities=8% Similarity=0.159 Sum_probs=39.0
Q ss_pred cCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEecCcccCCCCcccccccccCCcceEEEEe
Q 012759 84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (457)
Q Consensus 84 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~ 149 (457)
.+|+.+ ++....||.++.+.+ ++++..-.+..||...... ...+.-+++|+.|.+....
T Consensus 5 vNg~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~V 63 (66)
T 1f0z_A 5 FNDQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQVI 63 (66)
T ss_dssp ESSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEESC
T ss_pred ECCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEeec
Confidence 456654 456778999998876 5666666777888776532 1223457788888776543
No 336
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=32.82 E-value=1.1e+02 Score=22.08 Aligned_cols=61 Identities=18% Similarity=0.232 Sum_probs=48.1
Q ss_pred EEEeecCccHHHHHHHhhhhcCCCCCCceEEecCee-ccCCCcccccccccCceEEEEEEec
Q 012759 318 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLRLR 378 (457)
Q Consensus 318 ~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~-L~d~~~l~~~~i~~~~~l~l~~~~~ 378 (457)
.+.|++++..-.+-+--.+.+++|+..--+..+.+. ++..++-...=++-|+.|+|+++.+
T Consensus 27 vlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDR 88 (92)
T 1j0g_A 27 VLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDR 88 (92)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCS
T ss_pred EEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEeccccc
Confidence 378999999999999999999999987666665544 5666766666677889999998753
No 337
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=32.63 E-value=73 Score=29.23 Aligned_cols=67 Identities=18% Similarity=0.240 Sum_probs=46.0
Q ss_pred eEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEC-------CeEcCCCCcccc----cCCCCCCEEEE
Q 012759 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-------GKQLEDGRTLAD----YNIQKESTLHL 449 (457)
Q Consensus 383 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~-------g~~L~d~~tL~~----~~I~~~~~i~l 449 (457)
+.|-..+|...++.|++++|+.||-..++.+.+.+.+.-.-++. -++|+|...+.+ ........+.+
T Consensus 34 vkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds~n~l~f 111 (281)
T 4gmv_A 34 IRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIF 111 (281)
T ss_dssp EEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTCCCEEEE
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCCCceEEE
Confidence 44444568899999999999999999999988876555544442 367777765443 34444444444
No 338
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=32.62 E-value=21 Score=25.65 Aligned_cols=51 Identities=8% Similarity=0.191 Sum_probs=35.7
Q ss_pred EEEEcCCCCHHHHHHHHhhhhCCCCCCeEEEecCcccCCCCcccccccccCCcceEEEEe
Q 012759 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (457)
Q Consensus 90 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~ 149 (457)
.++++...||.++.+.+ ++++..-.+..||+....+ +-+++|+.|.+....
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ppv 74 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIPVV 74 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSCCC
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEccc
Confidence 34556778999988765 4566666778888887654 567788888775443
No 339
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=30.70 E-value=1.9e+02 Score=22.61 Aligned_cols=64 Identities=13% Similarity=0.157 Sum_probs=48.5
Q ss_pred eeCC-----cEEEEEeecCccHHHHHHHhhh-hcC-------CCCCCceEEecCeec--cCCCcccccccccCceEEEE
Q 012759 311 TLTG-----KTITLEVESSDTIDNVKAKIQD-KEG-------IPPDQQRLIFAGKQL--EDGRTLADYNIQKESTLHLV 374 (457)
Q Consensus 311 ~~~g-----~~~~l~v~~~~Tv~~lK~~I~~-~~~-------ip~~~q~l~~~g~~L--~d~~~l~~~~i~~~~~l~l~ 374 (457)
.|++ --+.+.+++.++.++|-+++-. -++ |.-.+-.+..+|+.. +.+++|++.|+.--+.|+++
T Consensus 29 gWd~HllFcap~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 29 YWPDHLLFCAPFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp ECTTCTTSCSCEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred EecCCeeecCceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEe
Confidence 5766 3577999999999999888654 344 444455577788775 67899999999888888776
No 340
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=30.51 E-value=60 Score=24.35 Aligned_cols=39 Identities=28% Similarity=0.367 Sum_probs=32.9
Q ss_pred CCEEEEEecCCchHHHHHHHHhhhcCCCCCCeE-EEECCe
Q 012759 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGK 428 (457)
Q Consensus 390 g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~-l~~~g~ 428 (457)
...+++.|++..+=.++|+.|+..+++.+..-+ +...|+
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK 66 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGK 66 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCc
Confidence 368999999999999999999999999998765 344444
No 341
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=29.96 E-value=1.1e+02 Score=25.70 Aligned_cols=61 Identities=16% Similarity=0.279 Sum_probs=42.5
Q ss_pred EEEecCCchHHHHHHHHhhhcC-CC---------CCCeEEEECCeEcCCCCcccccCCCCCCEEEEEEecCCC
Q 012759 394 TLEVESSDTIDNVKAKIQDKEG-IP---------PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~g-ip---------~~~q~l~~~g~~L~d~~tL~~~~I~~~~~i~l~~r~~GG 456 (457)
.++++. .||.+|...+..... +. .....+..||+......- .+.-+++|+.|.+.-..-||
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~-~dt~L~dGDeVai~PpVsGG 87 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQG-LSTPLSPGATLDLFPPVAGG 87 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTG-GGCBCCTTCEEEEECSCCSE
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcCC-CccCCCCCCEEEEECccccc
Confidence 445665 899999999987741 10 234567788888765322 23458889999998888887
No 342
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=29.64 E-value=1.6e+02 Score=21.41 Aligned_cols=60 Identities=15% Similarity=0.232 Sum_probs=47.9
Q ss_pred EEEEEEcCCCCHHHHHHHHhhhh-C--CC--CCCeEEEecCcc--cCCCCcccccccccCCcceEEE
Q 012759 88 TITLEVESSDTIDNVKAKIQDKE-G--IP--PDQQRLIFAGKQ--LEDGRTLADYNIQKESTLHLVL 147 (457)
Q Consensus 88 ~~~l~v~~~~tV~~lK~~i~~~~-g--ip--~~~q~L~~~g~~--L~d~~tl~~y~i~~~s~i~l~~ 147 (457)
...+.|+..+|+.++=++++... | ++ |...++..+|.. |..+.|+++-||.+-..|.+..
T Consensus 16 ~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 16 VQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 35678999999999999998753 4 22 235788899988 9999999999999888777653
No 343
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=29.61 E-value=68 Score=23.67 Aligned_cols=56 Identities=18% Similarity=0.215 Sum_probs=31.6
Q ss_pred EEEec-CCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCccccc-----ccccccceeEEEEec
Q 012759 14 TLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY-----NIQKESTLHLVLRLR 74 (457)
Q Consensus 14 ~~~v~-~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y-----~i~~~sti~l~~~~~ 74 (457)
++.++ .+-+|.++|+.|-.+.+.-...-.|.+ .|..|-++| -|..++++-+...|.
T Consensus 21 ~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~i-----~na~T~eeY~Dd~~lIprnssViVrRvP~ 82 (86)
T 2c7h_A 21 TVTFDGLHISLCDLKKQIMGREKLKAADCDLQI-----TNAQTKEEYTDDNALIPKNSSVIVRRIPI 82 (86)
T ss_dssp EEEESSSEEEHHHHHHHHHHHHTCCTTTEEEEE-----EESSSCCEECSTTCEEETTCCEEEEEEEC
T ss_pred eEEEcCCEEEHHHHHHHHHHHhCCCCCcccEEE-----eCCCCCCccCCCceEEecCCEEEEEeccC
Confidence 34443 368999999999888776543333332 223333333 356666665544443
No 344
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=29.33 E-value=57 Score=25.98 Aligned_cols=58 Identities=14% Similarity=0.171 Sum_probs=39.0
Q ss_pred EEEecCCchHHHHHHHHhhhcCCCCCCeEEEE-CCeEcCCCCccccc---CCCCCCEEEEEE
Q 012759 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADY---NIQKESTLHLVL 451 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~-~g~~L~d~~tL~~~---~I~~~~~i~l~~ 451 (457)
.+-|+.+.||+++...|..+..+++++-..+| ++.....+.++++. .=.++.-|++..
T Consensus 56 KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~lY~~~kdeDGfLY~~Y 117 (125)
T 3m95_A 56 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAF 117 (125)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred EEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEe
Confidence 45789999999999999999999988755444 65433455565442 222333455554
No 345
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=28.94 E-value=58 Score=24.43 Aligned_cols=40 Identities=28% Similarity=0.359 Sum_probs=33.2
Q ss_pred CCcEEEEEeecCccHHHHHHHhhhhcCCCCCCce-EEecCe
Q 012759 313 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGK 352 (457)
Q Consensus 313 ~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~-l~~~g~ 352 (457)
..+++++.|++.+|=.++|+.++..+++.+..-+ +...|.
T Consensus 26 ~~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK 66 (93)
T 3r8s_T 26 KSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGK 66 (93)
T ss_dssp TTSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCC
T ss_pred hCCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCc
Confidence 3478999999999999999999999999998533 445554
No 346
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=28.53 E-value=1.5e+02 Score=23.16 Aligned_cols=44 Identities=18% Similarity=0.295 Sum_probs=32.4
Q ss_pred EEEeeCCccHHHHHHHHhhhcCCCCCCeEEEeCCccc-CCCcccc
Q 012759 242 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLA 285 (457)
Q Consensus 242 ~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L-~d~~tl~ 285 (457)
.+-|..+.||+++...|..+.++++++-.++|.+..+ ..+.++.
T Consensus 48 KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~ 92 (117)
T 1eo6_A 48 KYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMG 92 (117)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHH
T ss_pred EEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHH
Confidence 3567788999999999999999999886666644434 4444443
No 347
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=28.37 E-value=1.7e+02 Score=21.05 Aligned_cols=56 Identities=11% Similarity=0.202 Sum_probs=35.8
Q ss_pred EEeeCCccHHHHHHHHhhhcC------C-----CCCCeEEEeCCcccCCCccccccccCCCCeEEEEE
Q 012759 243 LEVESSDTIDNVKAKIQDKEG------I-----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 299 (457)
Q Consensus 243 ~~v~~~~tV~~lK~~I~~~~~------i-----p~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~ 299 (457)
+++....||.+|.+.+..+.+ + .........||+...... -.+..+++++.+.++.
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~p 85 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLFP 85 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEEC
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEEEEeC
Confidence 345567899999999987752 1 013345667777654221 2345689999987764
No 348
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=28.09 E-value=1.3e+02 Score=21.56 Aligned_cols=57 Identities=18% Similarity=0.233 Sum_probs=42.4
Q ss_pred eEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEE--E---CCe--EcCCCCccccc
Q 012759 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--F---AGK--QLEDGRTLADY 439 (457)
Q Consensus 383 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~--~---~g~--~L~d~~tL~~~ 439 (457)
|.+..++++...++|.|+.|+.+--.++.++-|+.|+.-..+ . .|+ .++.+.-++.+
T Consensus 4 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~V~~~~~~~~~~~~~i~WdtD~~~L 67 (77)
T 1c1y_B 4 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLLHEHKGKKARLDWNTDAASL 67 (77)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEEEEEGGGSSEEEEECTTSBGGGG
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEEEeccCCCCCccccchhHhhhhc
Confidence 445567788889999999999999999999999999877665 2 342 45555544443
No 349
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=27.59 E-value=53 Score=24.20 Aligned_cols=33 Identities=9% Similarity=0.234 Sum_probs=29.6
Q ss_pred CCcEEEEEeecCccHHHHHHHhhhhcCCCCCCc
Q 012759 313 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 345 (457)
Q Consensus 313 ~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q 345 (457)
..+++++.|++.+|=.++|+.++..+++.+..-
T Consensus 21 ~~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~V 53 (85)
T 1vq8_S 21 FQNKLQFAVDDRASKGEVADAVEEQYDVTVEQV 53 (85)
T ss_dssp HSCEEEEEECTTCCHHHHHHHHHHHHCCCEEEE
T ss_pred hCCEEEEEECCCCCHHHHHHHHHHHhCCCceEE
Confidence 357899999999999999999999999998753
No 350
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.44 E-value=95 Score=23.16 Aligned_cols=49 Identities=14% Similarity=0.268 Sum_probs=0.0
Q ss_pred chHHHHHHHHhhhcCCCCCCeEEEEC--CeEcCCCCcccccCCCCCCEEEEEEe
Q 012759 401 DTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 401 ~tV~~lK~~i~~~~gip~~~q~l~~~--g~~L~d~~tL~~~~I~~~~~i~l~~r 452 (457)
.+..+|+.+.+++.+++...-+|+.. |.+++|+.-+.-+ +..|+.+.++
T Consensus 28 ~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tL---p~nT~lmvL~ 78 (91)
T 2eel_A 28 SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTL---GDNTHFMILE 78 (91)
T ss_dssp SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTS---CSSEEEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhC---CCCCEEEEEc
No 351
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=27.18 E-value=66 Score=24.89 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=0.0
Q ss_pred EEecCCchHHHHHHHHhhhcCCCCCC-eEEEECCeEcCCCCccccc
Q 012759 395 LEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADY 439 (457)
Q Consensus 395 l~v~~~~tV~~lK~~i~~~~gip~~~-q~l~~~g~~L~d~~tL~~~ 439 (457)
+-|+.+.||+++...|..+.++++++ ..|+.++.....+.++++.
T Consensus 48 flVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~L 93 (110)
T 2r2q_A 48 YLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQL 93 (110)
T ss_dssp EEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred EEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHH
No 352
>1rax_A Protein (RA-domain of RAL guanosine dissociation stimulator); RAS-binding domain, ralgef, ralgds, RAS; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=26.85 E-value=1.5e+02 Score=23.07 Aligned_cols=70 Identities=24% Similarity=0.367 Sum_probs=45.3
Q ss_pred eEEEEcCCCcEEE-EEecCCCcHHHHHHHHhhhcCCCCc---cceEeeccEEccCCCcc-------cccccccccceeEE
Q 012759 2 QIFVKTLTGKTIT-LEVESSDTIDNVKAKIQDKEGIPPD---QQRLIFAGKQLEDGRTL-------ADYNIQKESTLHLV 70 (457)
Q Consensus 2 ~i~~~~~~g~~~~-~~v~~~dtv~~ik~ki~~~~gip~~---~q~l~~~g~~L~~~~tl-------~~y~i~~~sti~l~ 70 (457)
.|.+++.+|..+. +.+...|-..++-++.-+|+++..+ ...| + +.|.+++-| -.|-+.......++
T Consensus 32 RVs~d~~~gn~YKSIlltsqDktp~VI~raL~Khnl~~~~~~~y~L-~--Q~Lp~~kEL~iPd~aNVFYAm~~s~~~dFv 108 (115)
T 1rax_A 32 RVSLDVDNGNMYKSILVTSQDKAPAVIRKAMDKHNLEEEEPEDYEL-L--QILSDDRKLKIPENANVFYAMNSTANYDFV 108 (115)
T ss_dssp EEEESSSSCCCCEEEEEETTCCHHHHHHHHHHHHTCTTSCSTTEEE-E--EECSSSCEEEECTTSCHHHHSCTTSCCEEE
T ss_pred EEEEecCCCcEEEEEEEecCCCcHHHHHHHHHHcCCCCCCccceEE-E--EEcCCCCeEecCCCcceEEEEcCCCCccEE
Confidence 4566777776544 8899999999999999999998753 2233 1 344433322 13555555666777
Q ss_pred EEec
Q 012759 71 LRLR 74 (457)
Q Consensus 71 ~~~~ 74 (457)
+|.+
T Consensus 109 LR~r 112 (115)
T 1rax_A 109 LKKR 112 (115)
T ss_dssp EEEC
T ss_pred Eeec
Confidence 6654
No 353
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=26.51 E-value=87 Score=28.27 Aligned_cols=55 Identities=16% Similarity=0.143 Sum_probs=36.7
Q ss_pred eeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEEEEC-------CeEcCCCCcc
Q 012759 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-------GKQLEDGRTL 436 (457)
Q Consensus 382 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~-------g~~L~d~~tL 436 (457)
-|.|-..+|...++.|++++|+.||=..+..+.+++.+.-.-++. -|+|+|...+
T Consensus 10 ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V 71 (256)
T 3hk0_A 10 DVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELV 71 (256)
T ss_dssp EEEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBH
T ss_pred EEEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhH
Confidence 344445678899999999999999999999888776555554443 4677777644
No 354
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=26.27 E-value=90 Score=22.44 Aligned_cols=60 Identities=18% Similarity=0.285 Sum_probs=37.8
Q ss_pred eEEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEeeccEEccCCCcccccccccccceeEE
Q 012759 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (457)
Q Consensus 2 ~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~ 70 (457)
+|||.+++|+.+ ++..+.|+.++...|....|-.. --...+|+..+- +|.+.++..+.++
T Consensus 7 ~i~v~tP~G~~~--~lp~GaT~~D~A~~Ih~~lg~~~--v~AkVNG~~v~L-----~~~L~~gd~VeIi 66 (78)
T 3hvz_A 7 EVFVFTPKGDVI--SLPIGSTVIDFAYAIHSAVGNRM--IGAKVDGRIVPI-----DYKVKTGEIIDVL 66 (78)
T ss_dssp EEEEECTTSCEE--EEETTCBHHHHHHHHCHHHHHTE--EEEEETTEEECT-----TCBCCTTCBEEEE
T ss_pred eEEEECCCCCEE--EecCCCCHHHHHHHhhhhhhcce--EEEEECCEEcCC-----CcccCCCCEEEEE
Confidence 689999999776 46777899999888865443211 112346655433 3445566665553
No 355
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=26.19 E-value=63 Score=23.78 Aligned_cols=34 Identities=9% Similarity=0.239 Sum_probs=30.2
Q ss_pred CCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEE
Q 012759 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 423 (457)
Q Consensus 390 g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l 423 (457)
.+++++.|++..|=.++|+.++..+++.+..-+-
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT 55 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNT 55 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCceEEEe
Confidence 4589999999999999999999999999876653
No 356
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=26.14 E-value=1.9e+02 Score=22.59 Aligned_cols=43 Identities=19% Similarity=0.309 Sum_probs=32.3
Q ss_pred EEEeeCCccHHHHHHHHhhhcCCCCCCeEEEeCCccc-CCCccc
Q 012759 242 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 284 (457)
Q Consensus 242 ~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L-~d~~tl 284 (457)
.+-|.++.||+++...|.++..+++++-.++|-+..+ ..+.++
T Consensus 50 KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m 93 (118)
T 3rui_B 50 KYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALM 93 (118)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBH
T ss_pred eEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchH
Confidence 3568899999999999999999999887666643333 334444
No 357
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=25.40 E-value=75 Score=25.47 Aligned_cols=59 Identities=10% Similarity=0.206 Sum_probs=40.6
Q ss_pred EEEEecCCchHHHHHHHHhhhcCCCCCCeEEE-ECCeEc-CCCCccccc---CCCCCCEEEEEE
Q 012759 393 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQL-EDGRTLADY---NIQKESTLHLVL 451 (457)
Q Consensus 393 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~-~~g~~L-~d~~tL~~~---~I~~~~~i~l~~ 451 (457)
..+-|+.+.||+++...|..+.++++++-..+ |.+..+ ..+.++++. .=.++.-|++..
T Consensus 55 ~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Y 118 (130)
T 2zjd_A 55 TKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVY 118 (130)
T ss_dssp CEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred cEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHHHHHhCCCCCEEEEEE
Confidence 34578999999999999999999999877656 655545 455565543 212233466554
No 358
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=25.33 E-value=52 Score=25.30 Aligned_cols=68 Identities=25% Similarity=0.382 Sum_probs=50.8
Q ss_pred eEEEEccCCceEEEEeeCCccHHHHHHHHhhhcCCCCC--CeEEEeCC---cccCCCccccccccCCCCeEEEE
Q 012759 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD--QQRLIFAG---KQLEDGRTLADYNIQKESTLHLV 298 (457)
Q Consensus 230 ~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~--~q~L~~~g---~~L~d~~tl~~~~i~~~~tl~l~ 298 (457)
.|+|...+ ..+++.|....-|+.|..++-++..++.+ ++.|-.-. +.+.-..||..|||+..+.+++-
T Consensus 28 ~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ft 100 (112)
T 2lgx_A 28 SVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFT 100 (112)
T ss_dssp ECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBB
T ss_pred EEEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceec
Confidence 44455544 66778888888999999999988776443 56666533 34788999999999998887653
No 359
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=25.16 E-value=85 Score=24.65 Aligned_cols=58 Identities=16% Similarity=0.223 Sum_probs=38.6
Q ss_pred EEEecCCchHHHHHHHHhhhcCCCCCCeEEEE-CCeEcCCCCccccc---CCCCCCEEEEEE
Q 012759 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADY---NIQKESTLHLVL 451 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~-~g~~L~d~~tL~~~---~I~~~~~i~l~~ 451 (457)
.+-|+.+.||+++...|..+..+++++-..+| ++.....+.++++. .=.++.-|+++.
T Consensus 50 KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Y 111 (118)
T 3rui_B 50 KYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTY 111 (118)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred eEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEE
Confidence 35699999999999999999999987755544 66433455555432 222333455544
No 360
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=23.81 E-value=96 Score=23.44 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=24.4
Q ss_pred eEEEEcCCCcEEEEEecCCCcHHHHHHH
Q 012759 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (457)
Q Consensus 2 ~i~~~~~~g~~~~~~v~~~dtv~~ik~k 29 (457)
+|.|.+.+|+..++++.+.+|+.+.-.+
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~~ 29 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALRD 29 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHHH
Confidence 5888999999999999999999986544
No 361
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=23.31 E-value=82 Score=24.68 Aligned_cols=59 Identities=14% Similarity=0.197 Sum_probs=39.8
Q ss_pred EEEecCCchHHHHHHHHhhhcCCCCCCeEEEE-CCeEcCCCCccccc---CCCCCCEEEEEEe
Q 012759 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADY---NIQKESTLHLVLR 452 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~-~g~~L~d~~tL~~~---~I~~~~~i~l~~r 452 (457)
.+-|+.+.||+++...|..+.++++++-..+| ++.....+.++++. .=..+.-|+++..
T Consensus 48 KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys 110 (117)
T 1eo6_A 48 KYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYS 110 (117)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEEEEEEe
Confidence 45688899999999999999999988754444 55544455565543 2123445666654
No 362
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=23.28 E-value=93 Score=32.34 Aligned_cols=47 Identities=21% Similarity=0.179 Sum_probs=39.7
Q ss_pred CceeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCC-CCeEEEE
Q 012759 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF 425 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~-~~q~l~~ 425 (457)
..+.+.|..++|....++|++.+|+.++-..|+.+.|+.. +.+-|++
T Consensus 262 ~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 262 KPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred CceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 4567788889999999999999999999999999999754 4556665
No 363
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.00 E-value=80 Score=23.28 Aligned_cols=33 Identities=12% Similarity=0.247 Sum_probs=29.5
Q ss_pred CCcEEEEEeecCccHHHHHHHhhhhcCCCCCCc
Q 012759 313 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 345 (457)
Q Consensus 313 ~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q 345 (457)
..+++++.|.+.+|=.++|+.++..+++.+..-
T Consensus 22 ~~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~V 54 (86)
T 3j21_T 22 KENKLTFIVDRRATKQDIKRAVEEIFNVKVEKV 54 (86)
T ss_dssp TSCEEEEEECTTCCHHHHHHHHHHHTTCCEEEE
T ss_pred hCCEEEEEEcCCCCHHHHHHHHHHHcCCCceEE
Confidence 357899999999999999999999999988753
No 364
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=22.98 E-value=84 Score=23.65 Aligned_cols=33 Identities=21% Similarity=0.177 Sum_probs=29.5
Q ss_pred CCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeE
Q 012759 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 422 (457)
Q Consensus 389 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~ 422 (457)
.++ +++.|++..|=.++|+.|+..+++.+..-+
T Consensus 22 ~n~-y~F~V~~~anK~eIK~aVE~lf~VkV~~VN 54 (95)
T 2zjr_Q 22 RGV-YSFWVSPKATKTEIKDAIQQAFGVRVIGIS 54 (95)
T ss_dssp TTC-CEEEECSSCTHHHHHHHHHHHHCCCCSEEE
T ss_pred CCE-EEEEEcCCCCHHHHHHHHHHHhCCCceEEE
Confidence 344 999999999999999999999999997765
No 365
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=22.91 E-value=1.5e+02 Score=21.28 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=35.3
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEee
Q 012759 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45 (457)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~ 45 (457)
|-+-.+|++...++|.|+.|+.+.=.|+-++-|+.++. .-.|
T Consensus 4 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~-C~V~ 45 (77)
T 1c1y_B 4 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPEC-CAVF 45 (77)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGG-EEEE
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCCHHH-eEEE
Confidence 44556899999999999999999999999999997764 5555
No 366
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=22.63 E-value=2.5e+02 Score=21.22 Aligned_cols=67 Identities=13% Similarity=0.194 Sum_probs=41.5
Q ss_pred eeEEEEccCCceEEEEeeCCccHHHHHHHHhhhcCCCCC--CeEEE--eCCcccCCCccccccccCCCCeEEEEEe
Q 012759 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD--QQRLI--FAGKQLEDGRTLADYNIQKESTLHLVLR 300 (457)
Q Consensus 229 ~~i~V~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~--~q~L~--~~g~~L~d~~tl~~~~i~~~~tl~l~~~ 300 (457)
.+..|...+.++ ..-|-++ +.++|+.+.+++++++.. .-.|+ ..|-.++|..-+... +..|+.+++.
T Consensus 19 kPfkV~~~~~r~-k~GV~A~-SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tL---p~nT~lmvL~ 89 (100)
T 1f2r_I 19 KPCLLRRNHSRD-QHGVAAS-SLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCL---PSNTKFVALA 89 (100)
T ss_dssp EEEEEEETTEEE-EEEEEES-SHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSS---CSCCEEEEEC
T ss_pred CCEEEeeCCCcc-EEeEEcC-CHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcC---CCCCEEEEEc
Confidence 455566444444 6666555 899999999999999763 24444 467777655443332 2445545544
No 367
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=22.58 E-value=60 Score=24.46 Aligned_cols=38 Identities=21% Similarity=0.215 Sum_probs=30.9
Q ss_pred CCcEEEEEeecCccHHHHHHHhhhhcCCCCCCce-EEecC
Q 012759 313 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAG 351 (457)
Q Consensus 313 ~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~-l~~~g 351 (457)
.++ +++.|++.+|=.++|+.++..+++.+..-+ +...|
T Consensus 22 ~n~-y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~g 60 (95)
T 2zjr_Q 22 RGV-YSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPG 60 (95)
T ss_dssp TTC-CEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCC
T ss_pred CCE-EEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCC
Confidence 344 999999999999999999999999998543 33444
No 368
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=22.55 E-value=91 Score=23.29 Aligned_cols=33 Identities=12% Similarity=0.064 Sum_probs=29.9
Q ss_pred CCEEEEEecCCchHHHHHHHHhhhcCCCCCCeE
Q 012759 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 422 (457)
Q Consensus 390 g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~ 422 (457)
.+.+++.|++..+=.++|+.|+..+++.+..-+
T Consensus 21 ~n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~Vn 53 (92)
T 3tve_T 21 EGKYTFWVHPKATKTEIKNAVETAFKVKVVKVN 53 (92)
T ss_dssp TTEEEEEECTTCCHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceeeee
Confidence 368999999999999999999999999987764
No 369
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=22.27 E-value=82 Score=24.83 Aligned_cols=61 Identities=15% Similarity=0.194 Sum_probs=42.4
Q ss_pred EEEEEeecCccHHHHHHHhhhhcCCCCC------CceEE---ecCe--eccCCCcccccccccCceEEEEEE
Q 012759 316 TITLEVESSDTIDNVKAKIQDKEGIPPD------QQRLI---FAGK--QLEDGRTLADYNIQKESTLHLVLR 376 (457)
Q Consensus 316 ~~~l~v~~~~Tv~~lK~~I~~~~~ip~~------~q~l~---~~g~--~L~d~~~l~~~~i~~~~~l~l~~~ 376 (457)
-+++.+.-+.|+.+++..+.++.+...+ .+.|+ +.|. +|+++..-..-.+..+..|++..+
T Consensus 21 y~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRLfvc~k 92 (120)
T 2dhz_A 21 YVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHLFACTR 92 (120)
T ss_dssp CCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEEEEECT
T ss_pred eEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 3458889999999999999999987654 56666 4554 344444333334556778888754
No 370
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=22.26 E-value=76 Score=23.74 Aligned_cols=39 Identities=18% Similarity=0.149 Sum_probs=32.4
Q ss_pred CcEEEEEeecCccHHHHHHHhhhhcCCCCCCce-EEecCe
Q 012759 314 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGK 352 (457)
Q Consensus 314 g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~-l~~~g~ 352 (457)
.+++++.|++.+|=.++|+.++..+++.+..-+ +...|+
T Consensus 21 ~n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK 60 (92)
T 3tve_T 21 EGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGK 60 (92)
T ss_dssp TTEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCc
Confidence 378999999999999999999999999987543 335544
No 371
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=22.13 E-value=84 Score=22.60 Aligned_cols=26 Identities=27% Similarity=0.199 Sum_probs=24.1
Q ss_pred EEEEEecCCCcHHHHHHHHhhhcCCC
Q 012759 12 TITLEVESSDTIDNVKAKIQDKEGIP 37 (457)
Q Consensus 12 ~~~~~v~~~dtv~~ik~ki~~~~gip 37 (457)
++++.|+++-+..++..||.++.+.+
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHccc
Confidence 67899999999999999999999975
No 372
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=21.99 E-value=1.4e+02 Score=26.76 Aligned_cols=43 Identities=14% Similarity=0.144 Sum_probs=35.0
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHHhhhcCCCCccceEee
Q 012759 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45 (457)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~gip~~~q~l~~ 45 (457)
|-|...+|.+-++.|++..|+.+|-..+.++.+++.+...-++
T Consensus 37 v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~~~l~ 79 (291)
T 3tca_A 37 VKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVDWCLY 79 (291)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTTEEEE
T ss_pred EEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCCeEEE
Confidence 4455678999999999999999999999999998776544444
No 373
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.76 E-value=94 Score=22.89 Aligned_cols=34 Identities=12% Similarity=0.229 Sum_probs=30.3
Q ss_pred CCEEEEEecCCchHHHHHHHHhhhcCCCCCCeEE
Q 012759 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 423 (457)
Q Consensus 390 g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l 423 (457)
.+++++.|++..+=.++|+.++..+++.+..-+-
T Consensus 23 ~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNT 56 (86)
T 3j21_T 23 ENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNT 56 (86)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEE
Confidence 4689999999999999999999999999876654
No 374
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=21.72 E-value=1e+02 Score=23.39 Aligned_cols=49 Identities=14% Similarity=0.227 Sum_probs=32.8
Q ss_pred CchHHHHHHHHhhhcCCCCC--CeEEE--ECCeEcCCCCcccccCCCCCCEEEEEE
Q 012759 400 SDTIDNVKAKIQDKEGIPPD--QQRLI--FAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 400 ~~tV~~lK~~i~~~~gip~~--~q~l~--~~g~~L~d~~tL~~~~I~~~~~i~l~~ 451 (457)
-.+..+|+.+.+++.+++.. .-+|+ .+|..++|+.-+.-+. ..|+.+.+
T Consensus 36 A~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tLp---~nT~lmvL 88 (100)
T 1f2r_I 36 ASSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCLP---SNTKFVAL 88 (100)
T ss_dssp ESSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSSC---SCCEEEEE
T ss_pred cCCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcCC---CCCEEEEE
Confidence 35899999999999999763 24444 4799998775433332 34444444
No 375
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=21.72 E-value=1.6e+02 Score=26.42 Aligned_cols=42 Identities=14% Similarity=0.107 Sum_probs=34.9
Q ss_pred eeeEEEcCCCCEEEEEecCCchHHHHHHHHhhhcCCCCCCeE
Q 012759 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 422 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~ 422 (457)
+.|.|-..+|...++.|++++|..++-..+..+.+++.+...
T Consensus 35 ~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~~ 76 (291)
T 3tca_A 35 LVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVDW 76 (291)
T ss_dssp EEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTTE
T ss_pred eEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCCe
Confidence 345555678889999999999999999999999998776554
No 376
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=20.90 E-value=1.2e+02 Score=23.84 Aligned_cols=71 Identities=13% Similarity=0.125 Sum_probs=44.1
Q ss_pred eEEEEEccCCcEEEEEEcCCCCHHHHHHHHhhhhCCCCC------CeEEE---ecCcc--cCCCCcccccccccCCcceE
Q 012759 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD------QQRLI---FAGKQ--LEDGRTLADYNIQKESTLHL 145 (457)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~------~q~L~---~~g~~--L~d~~tl~~y~i~~~s~i~l 145 (457)
+...|-..+..-+++.+..+.|+.+++..++++.+...+ .+.|. ++|.. |+++..--.-.+.-++.|++
T Consensus 10 i~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRLfv 89 (120)
T 2dhz_A 10 IFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHLFA 89 (120)
T ss_dssp EEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEEEE
T ss_pred EEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceEEE
Confidence 333344456666788899999999999999999886543 66665 67754 33332222222334455555
Q ss_pred EE
Q 012759 146 VL 147 (457)
Q Consensus 146 ~~ 147 (457)
..
T Consensus 90 c~ 91 (120)
T 2dhz_A 90 CT 91 (120)
T ss_dssp EC
T ss_pred ee
Confidence 43
No 377
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A*
Probab=20.83 E-value=5.3e+02 Score=24.24 Aligned_cols=105 Identities=10% Similarity=0.110 Sum_probs=68.2
Q ss_pred cCccHHHHHHHhhhhcCCCCCCceEEecCeeccCCCcccccccccCceEEEEEEecCceeeEEEcCCCCEEEEEecC-Cc
Q 012759 323 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES-SD 401 (457)
Q Consensus 323 ~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~l~l~~~~~~~~~i~v~~~~g~~~~l~v~~-~~ 401 (457)
.+.|+.++++.|.+++. .|-..+ .+.+......+..|+|...-.+.=.+.+.+ ..
T Consensus 117 aG~T~~e~~~~I~~~L~----------------------~~~~~P--~V~V~v~~~~~~~V~V~GeV~~PG~y~l~~~~~ 172 (359)
T 2j58_A 117 AGKTVSQVRQDITSRLT----------------------TYIESP--QVDVSIAAFRSQKVYVTGEVANSGKQAITNIPL 172 (359)
T ss_dssp TTCCHHHHHHHHHHHHT----------------------TTSSSC--CEEEEEEECCSCEEEEEESBSSCEEEECCSSCC
T ss_pred CCCCHHHHHHHHHHHHH----------------------HhccCC--eEEEEEccCCceEEEEEceecCCeEEEeCCCCC
Confidence 68899999999998843 121122 344444444567888887666666778887 88
Q ss_pred hHHHHHHHHhhhcC-CCCCCeEEEECCeEc--------CCCCcccccCCCCCCEEEEEE
Q 012759 402 TIDNVKAKIQDKEG-IPPDQQRLIFAGKQL--------EDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 402 tV~~lK~~i~~~~g-ip~~~q~l~~~g~~L--------~d~~tL~~~~I~~~~~i~l~~ 451 (457)
||.+.-.+.-..+. -......|.-+|+.. .+...-.++-+++|++|++--
T Consensus 173 tl~~ai~~AGG~t~~a~~~~V~l~R~g~~~~idl~~ll~~g~~~~~~~L~~GD~I~Vp~ 231 (359)
T 2j58_A 173 TVMDAINAAGGLAADADWRNVVLTHNGKDTKISLYALMQKGDLTQNHLLYHGDILFIPS 231 (359)
T ss_dssp BHHHHHHHTTSBCTTBCTTCEEEEETTEEEEECHHHHHTTCBGGGCCBCCTTCEEEECB
T ss_pred cHHHHHHHcCCCCcccccceEEEEECCeEEEEEHHHHhhcCCcccceeccCCCeEEEee
Confidence 98887666544332 233566777788743 223334557789999998753
Done!