Query 012763
Match_columns 457
No_of_seqs 256 out of 1780
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 06:03:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012763.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012763hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02498 omega-3 fatty acid de 100.0 4E-100 8E-105 782.2 38.9 445 1-456 1-449 (450)
2 PLN02505 omega-6 fatty acid de 100.0 3.8E-66 8.2E-71 527.8 34.5 339 100-447 22-380 (381)
3 PLN02598 omega-6 fatty acid de 100.0 6.8E-60 1.5E-64 487.4 30.4 328 105-449 74-404 (421)
4 cd03507 Delta12-FADS-like The 100.0 4.7E-40 1E-44 315.5 18.0 220 125-393 1-222 (222)
5 COG3239 DesA Fatty acid desatu 100.0 9.7E-39 2.1E-43 324.4 20.4 280 108-405 15-297 (343)
6 cd03511 Rhizopine-oxygenase-li 100.0 2.6E-37 5.6E-42 307.3 22.3 267 121-407 8-276 (285)
7 PLN03198 delta6-acyl-lipid des 100.0 8.1E-38 1.8E-42 332.1 17.2 307 111-440 189-516 (526)
8 PLN03199 delta6-acyl-lipid des 100.0 4E-37 8.7E-42 325.7 17.9 317 111-440 114-472 (485)
9 PF11960 DUF3474: Domain of un 100.0 1.4E-37 3.1E-42 266.6 9.9 131 1-146 1-136 (136)
10 cd03506 Delta6-FADS-like The D 100.0 2.3E-34 5E-39 272.8 11.2 198 160-412 3-203 (204)
11 cd03514 CrtR_beta-carotene-hyd 100.0 2.7E-33 5.8E-38 266.0 16.8 185 152-406 19-204 (207)
12 cd03508 Delta4-sphingolipid-FA 100.0 1.3E-30 2.8E-35 258.6 19.9 249 120-410 9-260 (289)
13 cd03509 DesA_FADS-like Fatty a 100.0 5.9E-30 1.3E-34 254.2 20.3 221 160-406 30-259 (288)
14 PF00487 FA_desaturase: Fatty 100.0 1E-30 2.2E-35 250.2 13.0 243 154-407 3-249 (257)
15 cd03510 Rhizobitoxine-FADS-lik 100.0 8.1E-31 1.8E-35 242.6 11.3 169 137-399 1-174 (175)
16 PLN02579 sphingolipid delta-4 100.0 2.5E-29 5.5E-34 252.4 20.5 266 101-410 16-288 (323)
17 cd03513 CrtW_beta-carotene-ket 100.0 8.1E-29 1.8E-33 237.1 18.4 189 157-396 32-224 (225)
18 KOG4232 Delta 6-fatty acid des 99.9 8.6E-27 1.9E-31 234.4 11.4 302 111-440 101-421 (430)
19 KOG2987 Fatty acid desaturase 99.8 1.4E-19 3E-24 170.6 15.5 266 100-410 11-286 (324)
20 cd03512 Alkane-hydroxylase Alk 99.8 1.5E-20 3.3E-25 189.0 8.5 243 153-432 68-312 (314)
21 cd01060 Membrane-FADS-like The 99.7 2.1E-17 4.5E-22 142.8 6.6 59 170-228 14-72 (122)
22 COG1398 OLE1 Fatty-acid desatu 98.4 1.4E-05 3E-10 77.6 16.4 51 175-226 66-117 (289)
23 PLN02220 delta-9 acyl-lipid de 98.2 3.3E-05 7.2E-10 77.3 14.0 51 175-226 76-127 (299)
24 KOG1600 Fatty acid desaturase 97.2 0.0052 1.1E-07 61.2 12.5 49 178-227 91-139 (321)
25 cd03505 Delta9-FADS-like The D 97.1 0.0042 9.1E-08 57.7 9.8 48 178-226 27-74 (178)
26 PF13829 DUF4191: Domain of un 65.8 17 0.00038 35.0 6.3 58 110-168 9-66 (224)
27 cd03513 CrtW_beta-carotene-ket 49.8 1.4E+02 0.003 28.8 9.7 12 211-222 206-217 (225)
28 PF09396 Thrombin_light: Throm 45.1 9.2 0.0002 27.6 0.6 9 7-15 20-28 (49)
29 PLN02505 omega-6 fatty acid de 25.1 1.5E+02 0.0033 31.0 5.9 34 165-198 263-296 (381)
30 PLN02434 fatty acid hydroxylas 21.4 3.6E+02 0.0079 26.3 7.3 12 210-221 121-132 (237)
No 1
>PLN02498 omega-3 fatty acid desaturase
Probab=100.00 E-value=3.7e-100 Score=782.23 Aligned_cols=445 Identities=84% Similarity=1.476 Sum_probs=397.8
Q ss_pred CccccccccCCCCCCCCCCCCCCCCC---C-CcccccCCccccccCCCCCcccCCCCCCCCcceeEeccccccccCCCch
Q 012763 1 MASWVLSECGLKPLPHIFPRPRTGIN---P-SKARFLHSKKSITDLKLPSVKCSGDFSRDRNWGLKVSAPLRVAPLEGED 76 (457)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (457)
||+|||||||+||||++|++||+++. | ++.++.+.++..+...+. ..++++.|+|+|+++||+|++...+++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (450)
T PLN02498 1 MASWVLSECGLRPLPRIYPRPRTGFISKNNLSKFRFLPSSKSYKRLPFD--LFSRGCSRERNWALNVSAPLTVPSGEEEE 78 (450)
T ss_pred CchhhhhhccCcccccccCCCccccccCCCccccccccccccccccccc--cccccccccccceeeecccCcccCCCcch
Confidence 99999999999999999999998863 2 245555554332122221 23466779999999999999976565442
Q ss_pred hhhhhccccCcCCCCCCccccCCCCCCCCCCCCCHHHHHHHccccccccCcchhHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 012763 77 EEERINGVNGIGNNKGVEEEEGSEFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVV 156 (457)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ir~~ipk~~f~~~~~~s~~~l~~~~~~i~~l~~~a~~~~~w~~ 156 (457)
+++ ..++.+ .+++.++++.++||||++|||++||+|||++|++|++.|+++|+++++++++++.+.++|++
T Consensus 79 ~~~---~~~~~~------~~~~~~~~~~~~p~~tl~dir~aIP~hcF~~s~~rs~~yv~~d~~vi~~l~~~a~~~~~w~~ 149 (450)
T PLN02498 79 DEE---GVNGVG------EDEEGEFDPGAPPPFNLADIRAAIPKHCWVKNPWRSMSYVVRDVAVVFGLAAAAAYFNNWVV 149 (450)
T ss_pred hhh---hhhhcc------cccccccCCCCCCCCCHHHHHHhCCHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 321 222221 11234589999999999999999999999999999999999999999888888877788999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccCCCcCCChhHHHHHHHHHhccccChhhHhHhhhccccCCCCCCCCCccccccHHHH
Q 012763 157 WPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIY 236 (457)
Q Consensus 157 ~~l~~~~~G~~~~~l~vl~HD~~Hgs~~~~~~lN~~vG~l~~~~~g~p~~~wr~~H~~HH~~tn~~e~Dpd~~p~~~~~y 236 (457)
|+++|+++|++++++++++|||||+++|+++++|+++|++++.++++|+..||.+|+.||++||+.++||++.|.++++|
T Consensus 150 wpl~w~~~G~~~~gL~vl~HDcgHgsf~~~k~lNd~vG~ll~~~ll~py~~Wr~sH~~HH~~Tn~~e~D~~~~P~t~~~y 229 (450)
T PLN02498 150 WPLYWFAQGTMFWALFVLGHDCGHGSFSNNPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIY 229 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCCCCCCcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhhhhhHHhhhhhhHHHHHHHHHHhCCCCCccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhChhhHHH
Q 012763 237 RTLDSATRFLRFKIPFPLLAYPFYLWSRSPGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLK 316 (457)
Q Consensus 237 ~~l~~~~r~~~~~~~~~ll~~p~yl~~r~~~~~~~~f~~~~~~f~~~er~~~~~s~l~~~~~~~~l~~l~~~~g~~~~l~ 316 (457)
+.++...++.++..++++++||+|++.+..++.++||+|.+++|.++||.++++|.+++++++++++.++..+|++.+++
T Consensus 230 ~~l~~~~~~~~~~~~~~~~g~p~YL~~~~~g~~~sHF~p~s~lF~~~er~~V~~S~~~~~~~~~~l~~l~~~~G~~~~l~ 309 (450)
T PLN02498 230 KSLDKVTRTLRFTLPFPMLAYPFYLWSRSPGKKGSHFHPDSDLFVPKERKDVITSTACWTAMAALLVCLSFVMGPIQMLK 309 (450)
T ss_pred HhccccchHHHHHHHHHHHHHHHHHhhhccCCcCcccCCCcccCChhhhhheeeehHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 98877777777777788899999999999888899999999999999999999999999988888888888899999999
Q ss_pred HHhHhHHHHHHHHHHhhhhcccCCCCCCCCCCCCcccccccceEeeccccccccccccccCcccchhcCCCCCCCCHHHH
Q 012763 317 LYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEA 396 (457)
Q Consensus 317 ~~llP~li~~~~l~~v~~l~H~g~~~~vp~~~~~ew~~~r~~l~Tid~~~g~ln~l~~ninyHveHHLfP~IP~y~Lp~a 396 (457)
+|++|++++++|+.++||+||+++++++|+|+++||++.|++++|+||+|||+|++++||++|++||+||+||+|||+||
T Consensus 310 ~Y~vP~lv~~~WL~~iTyLhHt~~~~~iP~y~~~eWs~~rGaL~TvDR~yg~i~~l~H~I~tHV~HHlf~~IPhYhl~eA 389 (450)
T PLN02498 310 LYGIPYWIFVMWLDFVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLVEA 389 (450)
T ss_pred HHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCCcchhhccceeecCcccchhhhhcCcccchhhhccCCCCCcCHHHH
Confidence 99999999999999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHhhhcCCCCCCCchhHHHHHHHHhhccEEEccCCcEEEEecCCCCCCCCCC
Q 012763 397 TEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSDNGDVVYYQTDPQLNGSSKS 456 (457)
Q Consensus 397 ~~~lkp~l~~~y~e~~~s~~lpy~~~~~l~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 456 (457)
++++|+++++||+|.++|||+|++++++|||++++|+|++|+|++++||+|+++++++++
T Consensus 390 t~aiK~~lg~yy~e~~~~~~~p~~~~~~l~r~~~~c~~v~~~~~v~~y~~~~~~~~~~~~ 449 (450)
T PLN02498 390 TEAAKPVLGKYYREPKKSGPLPFHLLGSLIRSMKQDHYVSDTGDVVYYQTDPQLSGSSKE 449 (450)
T ss_pred HHHHHHHhHHheecCCCCCCchhHHHHHHHHHhcceEEEeCCCCEEEEeccccccccccC
Confidence 999999999999999999999999999999999999999999999999999999987765
No 2
>PLN02505 omega-6 fatty acid desaturase
Probab=100.00 E-value=3.8e-66 Score=527.78 Aligned_cols=339 Identities=40% Similarity=0.745 Sum_probs=293.8
Q ss_pred CCCCCCCCCCCHHHHHHHccccccccCcchhHHHHHHHHHHHHHHHHHHH-Hh---h---hHHHHHHHHHHHHHHHHHHH
Q 012763 100 EFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYVVRDVVVVFGLAAAAA-YL---N---NWVVWPLYWAAQGTMFWALF 172 (457)
Q Consensus 100 ~~~~~~~~~~~l~~ir~~ipk~~f~~~~~~s~~~l~~~~~~i~~l~~~a~-~~---~---~w~~~~l~~~~~G~~~~~l~ 172 (457)
+..|.++|++|++|||++||++||++|++|++.++++|+++++++++++. +. + .+++|+++|+++|+++.+++
T Consensus 22 ~~~~~~~p~~tl~~ir~aiP~~~f~~s~~rs~~~v~~d~~~i~~~~~~a~~~~~~~p~~~~~~l~~~~~~~~G~~~~~l~ 101 (381)
T PLN02505 22 KRVPSSKPPFTLGDIKKAIPPHCFKRSVLRSFSYLVYDLLIAALLYYVATNYIPLLPGPLSYVAWPLYWAAQGCVLTGVW 101 (381)
T ss_pred ccCCCCCCCccHHHHHHhCCHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778899999999999999999999999999999999999988776554 22 2 24567888999999999999
Q ss_pred hhhcccccCCCcCCChhHHHHHHHHHhccccChhhHhHhhhccccCCCCCCCCCccccccHHHHhhchh-----hhhhHH
Q 012763 173 VLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYRTLDS-----ATRFLR 247 (457)
Q Consensus 173 vl~HD~~Hgs~~~~~~lN~~vG~l~~~~~g~p~~~wr~~H~~HH~~tn~~e~Dpd~~p~~~~~y~~l~~-----~~r~~~ 247 (457)
+++|||+|+++|+++++|+++|.+++.++++|+..||.+|+.||++||+.++|+++.|.++++++...+ ..++.+
T Consensus 102 vl~HDcgH~s~~~~~~lN~~vG~i~~~~ll~p~~~Wr~~H~~HH~~tn~~~~D~~~~P~~~~~~~~~~~~~~~p~~~~~~ 181 (381)
T PLN02505 102 VIAHECGHHAFSDYQWLDDTVGLVLHSALLVPYFSWKYSHRRHHSNTGSLERDEVFVPKKKSALPWYSKYLNNPPGRLLH 181 (381)
T ss_pred HHHHhhcchhhhCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCCCccccCcCHHHHhHHHHHhcChHHHHHH
Confidence 999999999999999999999999998999999999999999999999999999999877765542111 122211
Q ss_pred hhhhhhHHHHHHHHHHhCCC----CCccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHhHhHH
Q 012763 248 FKIPFPLLAYPFYLWSRSPG----KTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYW 323 (457)
Q Consensus 248 ~~~~~~ll~~p~yl~~r~~~----~~~~~f~~~~~~f~~~er~~~~~s~l~~~~~~~~l~~l~~~~g~~~~l~~~llP~l 323 (457)
....+.+|||+|++.+..+ +.++||+|.+++|.+++|.++++|.+++++++++++.++...|++.++++|++|++
T Consensus 182 -~~~~~~~G~p~yl~~~~~g~~~~~~~~hf~p~s~lf~~~er~~v~~S~~~i~~~~~~l~~~~~~~G~~~~l~~y~vP~l 260 (381)
T PLN02505 182 -IVVQLTLGWPLYLAFNVSGRPYDRFACHFDPYSPIFNDRERLQIYISDAGILAVSFGLYRLAAAKGLAWVLCVYGVPLL 260 (381)
T ss_pred -HHHHHHhHHHHHHHhhhcCCCCCcccccCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 1223457889998765544 23689999999999999999999999888887777777777899999999999999
Q ss_pred HHHHHHHHhhhhcccCCCCCCCCCCCCcccccccceEeeccccccccccccccC-cccchhcCCCCCCCCHHHHHHHHhH
Q 012763 324 IFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIG-THVIHHLFPQIPHYHLIEATEAARP 402 (457)
Q Consensus 324 i~~~~l~~v~~l~H~g~~~~vp~~~~~ew~~~r~~l~Tid~~~g~ln~l~~nin-yHveHHLfP~IP~y~Lp~a~~~lkp 402 (457)
+++.|+.++||+||+ ++++|+++++||++.++++.|+|++|+|++++++||+ +|++||++|+||+|||+||++++|+
T Consensus 261 v~~~wlv~itylqHt--~~~ip~~~~~~W~~~rgAl~tvdr~yg~~~~l~h~I~~~Hv~HHl~srIP~Y~l~eA~~aik~ 338 (381)
T PLN02505 261 IVNAFLVLITYLQHT--HPALPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKP 338 (381)
T ss_pred HHHHHHHHHHHHhcc--CCCCCccCCCCcChhhccceeccCcchHHHHHHccCCcccchhhccCCCCCCCHHHHHHHHHH
Confidence 999999999999999 4669999999999999999999999999999999996 9999999999999999999999999
Q ss_pred HHHHhhhcCCCCCCCchhHHHHHHHHhhccEEEccC---CcEEEEecC
Q 012763 403 VLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSDN---GDVVYYQTD 447 (457)
Q Consensus 403 ~l~~~y~e~~~s~~lpy~~~~~l~~s~~~~~~~~~~---g~~~~~~~~ 447 (457)
+++++|++.+++ .+++||++.++|++++++ +++++|++.
T Consensus 339 ~lg~~y~~~~~~------~~~~l~~~~~~C~~v~~~~~~~~v~~~~~~ 380 (381)
T PLN02505 339 ILGEYYQFDGTP------VYKALWREAKECIYVEPDEGGKGVFWYNNK 380 (381)
T ss_pred HhHHHhcCCCCc------HHHHHHHHhcceEEeCcCCCCCceEEEecC
Confidence 999999987642 678999999999999887 478888764
No 3
>PLN02598 omega-6 fatty acid desaturase
Probab=100.00 E-value=6.8e-60 Score=487.42 Aligned_cols=328 Identities=27% Similarity=0.513 Sum_probs=276.3
Q ss_pred CCCCCCHHHHHHHccccccccCcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCc
Q 012763 105 APPPFKLADIRAAIPKHCWVKDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFS 184 (457)
Q Consensus 105 ~~~~~~l~~ir~~ipk~~f~~~~~~s~~~l~~~~~~i~~l~~~a~~~~~w~~~~l~~~~~G~~~~~l~vl~HD~~Hgs~~ 184 (457)
.||+||++||+++||++||++|++|++.+++.+++++++.++++ ...+|+.++++++++|+.+.++++++|||+|+++|
T Consensus 74 ~~~~~tl~~i~~aiP~~~F~~s~~rs~~~l~~~i~~~~~~~~~~-~~~~w~~~~l~~~~~G~~~~~l~vl~Hec~H~s~~ 152 (421)
T PLN02598 74 LPDNVTLKDVVKTLPKEVFEIDDFKAWKTVAITVTSYALGLAAI-AVAPWYLLPLAWAWLGTAITGFFVIGHDCGHNSFS 152 (421)
T ss_pred CCCCcCHHHHHHhCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Confidence 46899999999999999999999999999999998874444332 33457788899999999999999999999999999
Q ss_pred CCChhHHHHHHHHHhccccChhhHhHhhhccccCCCCCCCCCccccccHHHHhhchhhhhhHHhhhhhhHHHHHHHHHHh
Q 012763 185 NDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYRTLDSATRFLRFKIPFPLLAYPFYLWSR 264 (457)
Q Consensus 185 ~~~~lN~~vG~l~~~~~g~p~~~wr~~H~~HH~~tn~~e~Dpd~~p~~~~~y~~l~~~~r~~~~~~~~~ll~~p~yl~~r 264 (457)
+++++|+++|.+++.++++|+..||.+|+.||++||+.++|||+.|.++++|+..+.+.++. . ...+| |+|++.+
T Consensus 153 ~~~~lN~~vG~~~~~~ll~p~~~wr~~H~~HH~~tn~~~~D~~~~p~t~~e~~~~~~~~r~l---~-~~~~G-P~yl~~~ 227 (421)
T PLN02598 153 KNQLVEDIVGTIAFTPLIYPFEPWRIKHNTHHAHTNKLVMDTAWQPFRPHQFDNADPLRKAM---M-RAGMG-PLWWWAS 227 (421)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccCcCCCCCCCCcCCcCHHHHhhcCHHHHHH---H-HHhHh-HHHHHHh
Confidence 99999999999999999999999999999999999999999999999998988655544432 1 12345 8877764
Q ss_pred CCCCCccccCCCCCCCCchhhHHHHHHHHHHHHHH-HHHHHHHHHhChhhHHHHHhHhHHHHHHHHHHhhhhcccCCCCC
Q 012763 265 SPGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMA-ALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVTYLHHHGHEDK 343 (457)
Q Consensus 265 ~~~~~~~~f~~~~~~f~~~er~~~~~s~l~~~~~~-~~l~~l~~~~g~~~~l~~~llP~li~~~~l~~v~~l~H~g~~~~ 343 (457)
.......||++. .|++++|.+++++.++.++++ +++..+....|.+.++.+|++|++++++|+++++++||+ +++
T Consensus 228 ~~~~~~~hf~~~--~f~~~er~~v~~S~~~v~~~~~~~l~~~~~~~G~~~~~~~ylvP~Lv~~~wl~~it~lhHt--~p~ 303 (421)
T PLN02598 228 IGHWLFWHFDLN--KFRPQEVPRVKISLAAVFAFMALGLPPLLYTTGPVGFVKWWLMPWLGYHFWMSTFTMVHHT--APH 303 (421)
T ss_pred hhcceeeccCcc--cCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCC
Confidence 422234677654 478888989888887766543 333333456788888999999999999999999999998 456
Q ss_pred CCCCCCCcccccccceE-eeccccc-cccccccccCcccchhcCCCCCCCCHHHHHHHHhHHHHHhhhcCCCCCCCchhH
Q 012763 344 LPWYRGKEWSYLRGGLT-TLDRDYG-WFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNL 421 (457)
Q Consensus 344 vp~~~~~ew~~~r~~l~-Tid~~~g-~ln~l~~ninyHveHHLfP~IP~y~Lp~a~~~lkp~l~~~y~e~~~s~~lpy~~ 421 (457)
+|+++.+||++.++++. |++++++ |+++|++|||||++||+||+||+||||+|+++++++++++|+|... .
T Consensus 304 ip~~~~~eW~~~~~al~~Tv~~~~~~~~~~L~hnIn~HV~HHLfP~IP~Y~lpea~~alk~~~g~~y~~~~~-------~ 376 (421)
T PLN02598 304 IPFKQAREWNAAQAQLNGTVHCDYPAWIEFLCHDISVHIPHHISSKIPSYNLRKAHASLQENWGKHLNKATF-------N 376 (421)
T ss_pred CCccccccccHhhhhhcCceecCCcHHHHHHHcCCccchhhhcCCCCCcchHHHHHHHHHHHhccccccCch-------h
Confidence 99999899999999986 9999886 7799999999999999999999999999999999999999998641 3
Q ss_pred HHHHHHHhhccEEEccCCcEEEEecCCC
Q 012763 422 FGDLIRSMSKDHYVSDNGDVVYYQTDPQ 449 (457)
Q Consensus 422 ~~~l~~s~~~~~~~~~~g~~~~~~~~~~ 449 (457)
++.+++..++|++++++++.+.|++...
T Consensus 377 ~~~l~~~~~~C~~~d~~~~~~~f~~~~~ 404 (421)
T PLN02598 377 WRLMKTILTQCHVYDKEKNYVPFDNLAP 404 (421)
T ss_pred HHHHHHHhhheEEEcCCCCeeeccccCc
Confidence 7789999999988888888888887553
No 4
>cd03507 Delta12-FADS-like The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria. The expression of these proteins appears to be temperature dependent: decreases in temperature result in increased levels of fatty acid desaturation within membrane lipids subsequently altering cell membrane fluidity. An important enzyme for the production of polyunsaturates in plants is the oleate delta-12 desaturase (Arabidopsis FAD2) of the endoplasmic reticulum. This enzyme accepts l-acyl-2-oleoyl-sn-glycero-3-phosphocholine as substrate and requires NADH:cytochrome b oxidoreductase, cytochrome b, and oxygen for activity. FAD2 converts oleate(18:1) to linoleate (18:2) and is closely related to oleate 12-hydroxylase which cat
Probab=100.00 E-value=4.7e-40 Score=315.52 Aligned_cols=220 Identities=47% Similarity=0.983 Sum_probs=175.1
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCcCCChhHHHHHHHHHhccccC
Q 012763 125 KDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVP 204 (457)
Q Consensus 125 ~~~~~s~~~l~~~~~~i~~l~~~a~~~~~w~~~~l~~~~~G~~~~~l~vl~HD~~Hgs~~~~~~lN~~vG~l~~~~~g~p 204 (457)
++.++++.+++.|+++++++++++....+|++++++++++|+.+.++++++|||+|+++++++++|+++|.+++.+++.|
T Consensus 1 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~l~He~~H~~~~~~~~~N~~~g~~~~~~~~~p 80 (222)
T cd03507 1 RSLFRSLSYLAPDILLLALLALAASLLLSWWLWPLYWIVQGLFLTGLFVLGHDCGHGSFSDNRRLNDIVGHILHSPLLVP 80 (222)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHHHhCC
Confidence 46789999999999998887776655567888888999999999999999999999999999999999999999999999
Q ss_pred hhhHhHhhhccccCCCCCCCCCccccccHHHHhhchhhhhhHHhhhhhhHHHHHHHHHHhCCCCCccccCCCCCCCCchh
Q 012763 205 YHGWRISHRTHHQNHGHVENDESWHPLSEKIYRTLDSATRFLRFKIPFPLLAYPFYLWSRSPGKTGSHFDPNSDLFVPSE 284 (457)
Q Consensus 205 ~~~wr~~H~~HH~~tn~~e~Dpd~~p~~~~~y~~l~~~~r~~~~~~~~~ll~~p~yl~~r~~~~~~~~f~~~~~~f~~~e 284 (457)
+..||..|+.||+++|+.++|+|+.|..+.++.......+ +.
T Consensus 81 ~~~w~~~H~~HH~~~~~~~~D~~~~p~~~~~~~~~~~~~~---y~----------------------------------- 122 (222)
T cd03507 81 YHSWRISHNRHHAHTGNLEGDEVWVPVTEEEYAELPKRLP---YR----------------------------------- 122 (222)
T ss_pred hHHHHHHHHHHHhccCCCCCCCcccCcCHHHhhcccccch---HH-----------------------------------
Confidence 9999999999999999999999999877766653221110 00
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHhHhHHHHHHHHHHhhhhcccCCCCCCCCCCCCcccccccce-Eeec
Q 012763 285 RKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGL-TTLD 363 (457)
Q Consensus 285 r~~~~~s~l~~~~~~~~l~~l~~~~g~~~~l~~~llP~li~~~~l~~v~~l~H~g~~~~vp~~~~~ew~~~r~~l-~Tid 363 (457)
.....+.+. .++....+ ..+ ++++|++|+++.+.|+.+++++||+ ++++|++++++|++.+.|+ +|+|
T Consensus 123 ---~~~~~~~~~-~~g~~~~~--~~~---~~~~~~ip~l~~~~~l~~~t~l~H~--~~~~~~~~~~~w~~~~~q~~~t~~ 191 (222)
T cd03507 123 ---LYRNPFLML-SLGWPYYL--LLN---VLLYYLIPYLVVNAWLVLITYLQHT--FPDIPWYRADEWNFAQAGLLGTVD 191 (222)
T ss_pred ---HHHHHHHHH-HHHHHHHH--HHH---HHHHHHhHHHHHHHHHHeeeEecCC--CCCCCCcCccccchhhhcceeeee
Confidence 000000000 00000000 111 6779999999999999999999998 3558999888999866666 5888
Q ss_pred cccc-cccccccccCcccchhcCCCCCCCCH
Q 012763 364 RDYG-WFNNIHHDIGTHVIHHLFPQIPHYHL 393 (457)
Q Consensus 364 ~~~g-~ln~l~~ninyHveHHLfP~IP~y~L 393 (457)
++++ |++++++|+|||+|||+||+||+|||
T Consensus 192 ~~~~~~~~~l~~~i~~hv~HHlfP~iP~y~l 222 (222)
T cd03507 192 RDYGGWLNWLTHIIGTHVAHHLFPRIPHYNL 222 (222)
T ss_pred ccccHHHHHHhcCCCcccchhcCCCCCcCcC
Confidence 8775 77999999999999999999999986
No 5
>COG3239 DesA Fatty acid desaturase [Lipid metabolism]
Probab=100.00 E-value=9.7e-39 Score=324.41 Aligned_cols=280 Identities=29% Similarity=0.473 Sum_probs=192.4
Q ss_pred CCCHHHHHHHccccccccCcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCcCCC
Q 012763 108 PFKLADIRAAIPKHCWVKDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDH 187 (457)
Q Consensus 108 ~~~l~~ir~~ipk~~f~~~~~~s~~~l~~~~~~i~~l~~~a~~~~~w~~~~l~~~~~G~~~~~l~vl~HD~~Hgs~~~~~ 187 (457)
..+++++++.+|+.|++++..+....++...++++++.....++++|+.++++++++|+++.++++++|||+||+++|++
T Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~~~~~~~~l~~~~~v~Hd~~Hgs~~~~r 94 (343)
T COG3239 15 AAPLDSIRARLPKPRTRRDAIAILITFLALAGLWALLALSLAYWPSWWLLPLALLLAGLLLTGLFSVGHDCGHGSFFKNR 94 (343)
T ss_pred ccchhhHHhhCccccccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhhhh
Confidence 45788999999999999988888877777776666655555566668888888888999999999999999999999999
Q ss_pred hhHHHHHHHHHhccccChhhHhHhhhccccCCCCCCCCCccccccHHHHhhchhhhhhHHhhhhhhHHHHHHHHHHhCCC
Q 012763 188 KLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYRTLDSATRFLRFKIPFPLLAYPFYLWSRSPG 267 (457)
Q Consensus 188 ~lN~~vG~l~~~~~g~p~~~wr~~H~~HH~~tn~~e~Dpd~~p~~~~~y~~l~~~~r~~~~~~~~~ll~~p~yl~~r~~~ 267 (457)
|+||++|++++.+.+.|+..||.+|++||++||+.|+|+|. +...+...+... ..+.++-.+.+.+...+.
T Consensus 95 ~iNd~ig~l~~~~~~~p~~~wR~~H~~HH~~t~~~~~d~~~-------~~~~~~~~~~~~--l~~~~i~~~~~~~~~~~~ 165 (343)
T COG3239 95 WINDLIGHLAAALLLAPPVFWRISHNQHHAHTNILDDDPET-------YVSYPEQLRRGP--LRFQLIRLPWLAFGFGPR 165 (343)
T ss_pred hHHHHHHHHHHHHHhcChhhhhhhHHHhhcccCCCCCCHHH-------HHhCchhhhhhh--HHHHHHHHHHHHHhhhhh
Confidence 99999999999988899999999999999999998888653 222211111100 001111111111111111
Q ss_pred CCccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHH-hHhHHHHHHHHHHhhhhcccCCCCCCCC
Q 012763 268 KTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLY-GLPYWIFVMWLDLVTYLHHHGHEDKLPW 346 (457)
Q Consensus 268 ~~~~~f~~~~~~f~~~er~~~~~s~l~~~~~~~~l~~l~~~~g~~~~l~~~-llP~li~~~~l~~v~~l~H~g~~~~vp~ 346 (457)
....++...+..+.+.++...+.......+.+.+ ..+..+..+| ++|+++.+.|...+++++|. ++ .+++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-------~~~~~l~~~~~~~p~l~~~~~~~~~~~~~h~-~~-~~~~ 236 (343)
T COG3239 166 WALLHFELLEKLFKRSGKAPKAAALATLLAAIGL-------AALLALAFFWGLIPLLLVGLWLVLVLFVHHT-FD-LLPH 236 (343)
T ss_pred hhhhhhhhhhhccCCcccchHHHHHHHHHHHHHH-------HHHHHHHHHHhHhHHHHHHHHHHHHHHhhcc-cc-cccc
Confidence 1111222212223333333333322222111111 1112223345 68999999999999999998 44 4777
Q ss_pred CCCCcccccccceE-eeccccc-cccccccccCcccchhcCCCCCCCCHHHHHHHHhHHHH
Q 012763 347 YRGKEWSYLRGGLT-TLDRDYG-WFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLG 405 (457)
Q Consensus 347 ~~~~ew~~~r~~l~-Tid~~~g-~ln~l~~ninyHveHHLfP~IP~y~Lp~a~~~lkp~l~ 405 (457)
....+|++...++. |++.+++ +++++++|+|||+|||+||+||+|+||++|+.+++.++
T Consensus 237 ~~~~d~~~~~~~l~~~~~~~~~~~~~~l~~n~nyH~~HHl~P~vP~y~lp~~~~~~~~~~~ 297 (343)
T COG3239 237 HGLEDWQWSDRALNARSNVDAPPLLRFLTGNINYHVEHHLFPDVPWYRLPRAHRLIKEALG 297 (343)
T ss_pred cccccchHHHHHHhccCccCchHHHHHhcCCccccHhhhCCCCCchhhHHHHHHHHHHHcC
Confidence 66677766665554 4455555 67999999999999999999999999999999999888
No 6
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA d
Probab=100.00 E-value=2.6e-37 Score=307.31 Aligned_cols=267 Identities=19% Similarity=0.183 Sum_probs=185.0
Q ss_pred cccccCcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCcCCChhHHHHHHHHHhc
Q 012763 121 HCWVKDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSS 200 (457)
Q Consensus 121 ~~f~~~~~~s~~~l~~~~~~i~~l~~~a~~~~~w~~~~l~~~~~G~~~~~l~vl~HD~~Hgs~~~~~~lN~~vG~l~~~~ 200 (457)
++.++|+++++..++.++++++++++++.+..+++..+++.+++|+.+.+++.++|||+|++++++|++|+++|.+++.+
T Consensus 8 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~He~~H~~~~~~~~~N~~~g~l~~~~ 87 (285)
T cd03511 8 QLMQRSDAPGLLDTALWLGALAVSGILIAWTWGSWWALPAFLVYGVLYAALFARWHECVHGTAFATRWLNDAVGQIAGLM 87 (285)
T ss_pred HHhCCcchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHH
Confidence 46789999999999999988877665554343343334445678999999999999999999999999999999999899
Q ss_pred cccChhhHhHhhhccccCCCCCCCCCcccc-ccHHHHhhchhhhhhHHhhh-hhhHHHHHHHHHHhCCCCCccccCCCCC
Q 012763 201 ILVPYHGWRISHRTHHQNHGHVENDESWHP-LSEKIYRTLDSATRFLRFKI-PFPLLAYPFYLWSRSPGKTGSHFDPNSD 278 (457)
Q Consensus 201 ~g~p~~~wr~~H~~HH~~tn~~e~Dpd~~p-~~~~~y~~l~~~~r~~~~~~-~~~ll~~p~yl~~r~~~~~~~~f~~~~~ 278 (457)
++.|+..||..|+.||+++|++++|||... .++. +.+...... ..........++....+.. ... .+.
T Consensus 88 ~~~~~~~~~~~H~~HH~~~~~~~~Dpd~~~~~~~~-------~~~~~~~~~g~~~~~~~l~~~~~~~~~~~--~~~-~~~ 157 (285)
T cd03511 88 ILLPPDFFRWSHARHHRYTQIPGRDPELAVPRPPT-------LREYLLALSGLPYWWGKLRTVFRHAFGAV--SEA-EKP 157 (285)
T ss_pred hcCChHHHHHHHHHHhcCcCCCCCCCCCCCCCchH-------HHHHHHHHhChHHHHHHHHHHHHHHhccc--ccc-cCC
Confidence 999999999999999999999999999742 2211 111111000 0000000000110000000 000 111
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHhHhHHHHHHHHHHhhhhcccCCCCCCCCCCCCcccccccc
Q 012763 279 LFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGG 358 (457)
Q Consensus 279 ~f~~~er~~~~~s~l~~~~~~~~l~~l~~~~g~~~~l~~~llP~li~~~~l~~v~~l~H~g~~~~vp~~~~~ew~~~r~~ 358 (457)
.+.++++.+++.+..++++++++++++++..|++.++++|++|++++..++.+++++||.+.++. +++ .+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~wllP~l~~~~~~~~~~~~eH~~~~~~-----~~~---~~~- 228 (285)
T cd03511 158 FIPAEERPKVVREARAMLAVYAGLIALSLYLGSPLLVLVWGLPLLLGQPILRLFLLAEHGGCPED-----AND---LRN- 228 (285)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc-----cch---hhh-
Confidence 22234456666676666666666666666778888888999999998888889999999975321 111 111
Q ss_pred eEeeccccccccccccccCcccchhcCCCCCCCCHHHHHHHHhHHHHHh
Q 012763 359 LTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKY 407 (457)
Q Consensus 359 l~Tid~~~g~ln~l~~ninyHveHHLfP~IP~y~Lp~a~~~lkp~l~~~ 407 (457)
.+|+..+ +|++++++|+|||+|||+||+||+|+||++|+.+++.+++.
T Consensus 229 trs~~~~-~~~~~l~~n~nyH~eHHl~P~vP~y~Lp~~h~~L~~~~~~~ 276 (285)
T cd03511 229 TRTTLTN-PPLRFLYWNMPYHAEHHMYPSVPFHALPKLHELIKDDLPVP 276 (285)
T ss_pred hhhhhhh-HHHHHHHcCCchHHHHhcCCCCcHhHHHHHHHHHHHhCCCC
Confidence 2333222 57799999999999999999999999999999999988754
No 7
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=100.00 E-value=8.1e-38 Score=332.06 Aligned_cols=307 Identities=17% Similarity=0.199 Sum_probs=204.2
Q ss_pred HHHHHHHcc-ccccccCcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCcCCChh
Q 012763 111 LADIRAAIP-KHCWVKDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKL 189 (457)
Q Consensus 111 l~~ir~~ip-k~~f~~~~~~s~~~l~~~~~~i~~l~~~a~~~~~w~~~~l~~~~~G~~~~~l~vl~HD~~Hgs~~~~~~l 189 (457)
.+++|+.+. .++|++++.+....++..++++++++++.+...+++..++.++++|+.+.++++++|||+|+++++++++
T Consensus 189 y~~Lr~~~~~~G~fk~~~~~y~~~l~~~i~l~a~~~~~~~~~~~~~~~ll~a~llgl~~~q~g~l~HD~~H~s~~~~~~~ 268 (526)
T PLN03198 189 FRDLRALFLREQLFKSSKLYYVFKLLTNIAIFAASIAIICCSKSISAVLASACMMALCFQQCGWLSHDFLHNQVFETRWL 268 (526)
T ss_pred HHHHHHHHHhccccccCcceeHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCcHH
Confidence 557777754 5899999988777776665555555544433333333455566789999999999999999999999999
Q ss_pred HHHHHHHHH-hccccChhhHhHhhhccccCCCCCC-----CCCcccccc-----HHHHhhc--hhhhhhHHhhhh--hhH
Q 012763 190 NSVVGHLLH-SSILVPYHGWRISHRTHHQNHGHVE-----NDESWHPLS-----EKIYRTL--DSATRFLRFKIP--FPL 254 (457)
Q Consensus 190 N~~vG~l~~-~~~g~p~~~wr~~H~~HH~~tn~~e-----~Dpd~~p~~-----~~~y~~l--~~~~r~~~~~~~--~~l 254 (457)
|+++|.+++ .++|.|+.+||..|+.||.+||..+ +|||+...+ ++..+.. ..+.++.++..+ +++
T Consensus 269 n~~~g~~~~~~~~G~s~~~W~~~Hn~HH~~tN~~~~~~~~~DpDI~~~pl~~~~~~~~~~~~~~~~~~~~~yQh~~f~~l 348 (526)
T PLN03198 269 NEVVGYLIGNAVLGFSTGWWKEKHNLHHAAPNECDQLYQPIDEDIDTLPLIAWSKDILATVENKTFLRILQYQHLFFMAL 348 (526)
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHhccCCCCCCccCCCCCCCcCccceeEechhhhhcchhhhHHHHHhhhhHHHHHH
Confidence 999999976 5689999999999999999999987 799986543 1111110 011122122111 111
Q ss_pred H-HHHHHHHHhCCCCCccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHH-HHHHHhChhhHHHHHhHhHHHHHHHHHHh
Q 012763 255 L-AYPFYLWSRSPGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLV-GLSFVMGPMQLLKLYGLPYWIFVMWLDLV 332 (457)
Q Consensus 255 l-~~p~yl~~r~~~~~~~~f~~~~~~f~~~er~~~~~s~l~~~~~~~~l~-~l~~~~g~~~~l~~~llP~li~~~~l~~v 332 (457)
+ ...+.+...+. .+....+ ..+.++. ...+..++.+++.+ .+++..+.+..+.++++..++.++++.++
T Consensus 349 l~l~~~~~~~~s~-----~~~~~~~-~~~~~~~---~e~~~~l~~~~~~~~l~l~~~~~~~~l~~~~l~~~~~g~~l~~v 419 (526)
T PLN03198 349 LFFARGSWLFWSW-----RYTSTAK-LAPADRL---LEKGTILFHYFWFIGTACYLLPGWKPLVWMAVTELMCGMLLGFV 419 (526)
T ss_pred HHHHHHHHHHHHH-----HHHhccc-cchHHHH---HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh
Confidence 1 11111100000 0000000 0111221 12222222222222 22334555556777888888999999999
Q ss_pred hhhcccCCCCCCCCCCCCcccccccceE-eecccc-ccccccccccCcccchhcCCCCCCCCHHHHHHHHhHHHHHhhhc
Q 012763 333 TYLHHHGHEDKLPWYRGKEWSYLRGGLT-TLDRDY-GWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYRE 410 (457)
Q Consensus 333 ~~l~H~g~~~~vp~~~~~ew~~~r~~l~-Tid~~~-g~ln~l~~ninyHveHHLfP~IP~y~Lp~a~~~lkp~l~~~y~e 410 (457)
++++|.+.+ +... .+ +|.+.|+. |.|... .|++||++|+|||+||||||+||++|||+ ++|+++++|+|
T Consensus 420 F~lnH~~~~--v~~~-~~--dw~~~Qv~tT~n~~~~~~~~wf~GGLN~QiEHHLFP~iP~~~l~~----i~piVk~~C~k 490 (526)
T PLN03198 420 FVLSHNGME--VYNK-SK--EFVNAQIVSTRDIKANIFNDWFTGGLNRQIEHHLFPTMPRHNLNK----IAPQVEAFCIK 490 (526)
T ss_pred hhccccCCC--CCCC-Cc--CHHHHHHhcCcCcCCchHHHHhhcCCcccchhhcCCCCchhhHHH----HhHHHHHHHHH
Confidence 999999643 3322 22 56677774 444332 46799999999999999999999999999 79999999999
Q ss_pred CCCCCCCchhHHHHHHHHhhcc-EEEccCCc
Q 012763 411 PKKSGPIPFNLFGDLIRSMSKD-HYVSDNGD 440 (457)
Q Consensus 411 ~~~s~~lpy~~~~~l~~s~~~~-~~~~~~g~ 440 (457)
++ +||+.. ++++++++. .+|++.|+
T Consensus 491 ~G----lpY~~~-~~~~a~~~~l~~L~~vg~ 516 (526)
T PLN03198 491 HG----LVYEDV-SIAAGTCKVLKALKEVAE 516 (526)
T ss_pred cC----CCCCCC-CHHHHHHHHHHHHHHHHH
Confidence 99 999888 899999998 88888876
No 8
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=100.00 E-value=4e-37 Score=325.72 Aligned_cols=317 Identities=16% Similarity=0.167 Sum_probs=206.4
Q ss_pred HHHHHHHcc-ccccccCcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCcCCChh
Q 012763 111 LADIRAAIP-KHCWVKDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKL 189 (457)
Q Consensus 111 l~~ir~~ip-k~~f~~~~~~s~~~l~~~~~~i~~l~~~a~~~~~w~~~~l~~~~~G~~~~~l~vl~HD~~Hgs~~~~~~l 189 (457)
.+++|+.+. .++|+++++.....++..++++++.+++.++..+++...++++++|+.+.+++.++|||+|+++++++++
T Consensus 114 y~~L~~~v~~~g~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aillg~~~~~~g~l~HDa~H~~~~~~~~~ 193 (485)
T PLN03199 114 YRDLRAKLIMMGMFKSNKMFYAYKCLFNMAIWAAACALVFYSDRFAMHIASALLLGLFFQQCGWLAHDFLHHQVFKKRKH 193 (485)
T ss_pred HHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhCCchH
Confidence 457888886 4889999877766555555555555554444556656666777889999999899999999999999999
Q ss_pred HHHHHHHHH-hccccChhhHhHhhhccccCCCC-------CCCCCccccc-----cHHH---Hhhc-h--hhhhhHHhhh
Q 012763 190 NSVVGHLLH-SSILVPYHGWRISHRTHHQNHGH-------VENDESWHPL-----SEKI---YRTL-D--SATRFLRFKI 250 (457)
Q Consensus 190 N~~vG~l~~-~~~g~p~~~wr~~H~~HH~~tn~-------~e~Dpd~~p~-----~~~~---y~~l-~--~~~r~~~~~~ 250 (457)
|+++|.+++ +++|.|..+|+..|+.||++||. .++|||+... +++. ++.. . ......++..
T Consensus 194 N~~~g~~~g~l~~G~S~~wW~~~Hn~HH~~tN~~~~~~~~~~~DPDI~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (485)
T PLN03199 194 GDLGGIFWGDLMQGFSMQWWKNKHNGHHAVPNLHCSSADAQDGDPDIDTMPLLAWSLKQAQSFREINADGKDSGFVKFAI 273 (485)
T ss_pred HHHHHHHHHHhccCCChHHHHHHHhhhhcCcCcCccccCCCCCCCCCCCCceeeecHHHhhhHhhhhhhccccchhhHHH
Confidence 999998876 56899999999999999999997 4789998522 2111 1111 0 0001111111
Q ss_pred hhh-HHHHHHHHHH------hC----CCCCccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHH-HHH--hChhhHHH
Q 012763 251 PFP-LLAYPFYLWS------RS----PGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGL-SFV--MGPMQLLK 316 (457)
Q Consensus 251 ~~~-ll~~p~yl~~------r~----~~~~~~~f~~~~~~f~~~er~~~~~s~l~~~~~~~~l~~l-~~~--~g~~~~l~ 316 (457)
.++ ++.+|++.+. .+ ............+ ..+++........++.++.+++.+.+ ++. .+++..+.
T Consensus 274 ~~Qh~~~~p~l~l~~l~w~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~~~lp~~~~~~~~~~~l~ 352 (485)
T PLN03199 274 KFQAFFYFPILLLARISWLNESFKCAFGLGAASENAALE-LEAKGLQYPLLEKAGILLHYAWMFTLSSGFGRFSFAYSAF 352 (485)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc-cccchhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 111 1122222111 10 0000000000000 11111122223323333332222222 222 45556677
Q ss_pred HHhHhHHHHHHHHHHhhhhcccCCCCCCCCCCCCcccccccceE-eeccc------cccccccccccCcccchhcCCCCC
Q 012763 317 LYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLT-TLDRD------YGWFNNIHHDIGTHVIHHLFPQIP 389 (457)
Q Consensus 317 ~~llP~li~~~~l~~v~~l~H~g~~~~vp~~~~~ew~~~r~~l~-Tid~~------~g~ln~l~~ninyHveHHLfP~IP 389 (457)
++++..++.++++.+++.++|.+++ ++. +++.-++.+.|+. |.|.. ..|++||+|++|||+||||||+||
T Consensus 353 ~~~~~~~~~g~~l~~~f~l~H~~~~--~~~-~~~~~d~~~~Qv~TT~n~~~~~~~~s~~~~wf~GGLN~QIEHHLFP~mp 429 (485)
T PLN03199 353 YFFTATASCGFFLAIVFGLGHNGMA--TYD-ADARPDFWKLQVTTTRNIIGGHGFPQAFVDWFCGGLQYQVDHHLFPMLP 429 (485)
T ss_pred HHHHHHHHHhhHheEEEecCCcccc--ccC-CCCCccHHHHHHHhccCccCCCCCcchHHHHHhccchhhhhhhcCCCCc
Confidence 8888888999999999999999643 222 1222245577774 55543 137799999999999999999999
Q ss_pred CCCHHHHHHHHhHHHHHhhhcCCCCCCCchhHHHHHHHHhhcc-EEEccCCc
Q 012763 390 HYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKD-HYVSDNGD 440 (457)
Q Consensus 390 ~y~Lp~a~~~lkp~l~~~y~e~~~s~~lpy~~~~~l~~s~~~~-~~~~~~g~ 440 (457)
++|||+ ++|+++++|+|++ +||+..+ ++++++++ .++++.|+
T Consensus 430 ~~~y~~----i~piVk~~C~k~g----lpY~~~~-~~~a~~~~~~~L~~vg~ 472 (485)
T PLN03199 430 RHNIAK----CHALVESFCKEWG----VKYHEAD-LVDGTMEVLHHLGKVAD 472 (485)
T ss_pred hhhHHh----hhHHHHHHHHHhC----CCccccC-HHHHHHHHHHHHHHHHH
Confidence 999999 7999999999999 9999886 99999988 88888773
No 9
>PF11960 DUF3474: Domain of unknown function (DUF3474); InterPro: IPR021863 This presumed domain is functionally uncharacterised. This domain is found in bacteria and eukaryotes. This domain is typically between 126 to 140 amino acids in length. This domain is found associated with PF00487 from PFAM. ; GO: 0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water, 0055114 oxidation-reduction process
Probab=100.00 E-value=1.4e-37 Score=266.65 Aligned_cols=131 Identities=73% Similarity=1.202 Sum_probs=105.6
Q ss_pred CccccccccCCCCCCCCCCCCCCCC----CCCcccccCCccccc-cCCCCCcccCCCCCCCCcceeEeccccccccCCCc
Q 012763 1 MASWVLSECGLKPLPHIFPRPRTGI----NPSKARFLHSKKSIT-DLKLPSVKCSGDFSRDRNWGLKVSAPLRVAPLEGE 75 (457)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (457)
||+||||||||||||++|++||+++ +++++++.++++... ++. ...+.+.++|+|++|||+|+++.+++||
T Consensus 1 MAswVLSECGlrPLp~iy~~pr~~~~s~~~~~~~r~~~~~~~~~~~~~----~~~~~~~~~r~w~l~VsaP~~~~~~~~e 76 (136)
T PF11960_consen 1 MASWVLSECGLRPLPRIYPRPRTGFISSTNPSKLRFLPSSKSVNLDSS----SPSSSGFRRRNWALNVSAPLRVPSVEEE 76 (136)
T ss_pred CcceeecccCCCcCccccCCCCCcccccCCCCccccCCcccccccccc----ccccccccccCcceeeeccCcccccccc
Confidence 9999999999999999999999997 356777776654422 222 1234567889999999999999999877
Q ss_pred hhhhhhccccCcCCCCCCccccCCCCCCCCCCCCCHHHHHHHccccccccCcchhHHHHHHHHHHHHHHHH
Q 012763 76 DEEERINGVNGIGNNKGVEEEEGSEFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYVVRDVVVVFGLAA 146 (457)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ir~~ipk~~f~~~~~~s~~~l~~~~~~i~~l~~ 146 (457)
+++ +.+. .++++.+|||++||||||+|||++||+|||++|+||+++|+++|+++++++++
T Consensus 77 -~~~----~~~~------~~~~~~~fdp~apPPFtL~dIraAIPkHCf~k~~~rS~sYv~rDv~iv~gLAA 136 (136)
T PF11960_consen 77 -EEE----VSSN------KEEEEEEFDPGAPPPFTLADIRAAIPKHCFVKSPWRSMSYVVRDVAIVFGLAA 136 (136)
T ss_pred -hhh----cccc------ccccccccCCCCCCCcCHHHHHhhcChhhcCCChHHHHHHHHHHHHHHHHhcC
Confidence 332 1111 13345679999999999999999999999999999999999999999988763
No 10
>cd03506 Delta6-FADS-like The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; an
Probab=100.00 E-value=2.3e-34 Score=272.76 Aligned_cols=198 Identities=18% Similarity=0.204 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCcCCChhHHHHHHHHHhccccChhhHhHhhhccccCCCCCCCCCccccccHHHHhhc
Q 012763 160 YWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYRTL 239 (457)
Q Consensus 160 ~~~~~G~~~~~l~vl~HD~~Hgs~~~~~~lN~~vG~l~~~~~g~p~~~wr~~H~~HH~~tn~~e~Dpd~~p~~~~~y~~l 239 (457)
+++++|+.+.+++.++|||+|+++++++++|+++|.+++.++|.|+..||..|+.||++||+.++|||+.+.+...+..
T Consensus 3 ~ai~~g~~~~~~~~~~Hd~~H~~~~~~~~~n~~~g~~~~~~~g~s~~~w~~~H~~HH~~tn~~~~Dpd~~~~~~~~~~~- 81 (204)
T cd03506 3 LAILLGLFWAQGGFLAHDAGHGQVFKNRWLNKLLGLTVGNLLGASAGWWKNKHNVHHAYTNILGHDPDIDTLPLLARSE- 81 (204)
T ss_pred HHHHHHHHHHHHHHHHHhccCccccCCchHHHHHHHHHHhccCCCHHHHHHHHhhhcCcCCCCCCCCCCCcCceEEecc-
Confidence 4456788888889999999999999999999999999999999999999999999999999999999986533211100
Q ss_pred hhhhhhHHhhhhhhHHHHHHHHHHhCCCCCccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHh
Q 012763 240 DSATRFLRFKIPFPLLAYPFYLWSRSPGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYG 319 (457)
Q Consensus 240 ~~~~r~~~~~~~~~ll~~p~yl~~r~~~~~~~~f~~~~~~f~~~er~~~~~s~l~~~~~~~~l~~l~~~~g~~~~l~~~l 319 (457)
+. . ...+..+.......+ ++.. +.... +.+|+
T Consensus 82 ----~~---------------~-----------------~~~~~~~~~~~~q~~----~~~~---~~~~~-----~~~~~ 113 (204)
T cd03506 82 ----PA---------------F-----------------GKDQKKRFLHRYQHF----YFFP---LLALL-----LLAFL 113 (204)
T ss_pred ----cc---------------c-----------------ccchHHHHHHHHHHH----HHHH---HHHHH-----HHHHH
Confidence 00 0 000000111111110 0000 00001 66899
Q ss_pred HhHHHHHHHHHHhhhhcccCCCCCCCCC-CCCcccccccceE-eecccc-ccccccccccCcccchhcCCCCCCCCHHHH
Q 012763 320 LPYWIFVMWLDLVTYLHHHGHEDKLPWY-RGKEWSYLRGGLT-TLDRDY-GWFNNIHHDIGTHVIHHLFPQIPHYHLIEA 396 (457)
Q Consensus 320 lP~li~~~~l~~v~~l~H~g~~~~vp~~-~~~ew~~~r~~l~-Tid~~~-g~ln~l~~ninyHveHHLfP~IP~y~Lp~a 396 (457)
+|.++.+.++.++++++|... + ++++ +++++++.+.|+. |+|... .|++|+++|+|||+||||||+||+++||+
T Consensus 114 ~~~~~~~~~l~~~~~~~H~~~-~-~~~~~~~~~~~w~~~q~~tt~~~~~~~~~~~l~ggln~qieHHLfP~ip~~~l~~- 190 (204)
T cd03506 114 VVQLAGGLWLAVVFQLNHFGM-P-VEDPPGESKNDWLERQVLTTRNITGSPFLDWLHGGLNYQIEHHLFPTMPRHNYPK- 190 (204)
T ss_pred HHHHHHhhhhheEeecccccc-c-ccCCCCCcccCHHHHHHhCcccCCCCCHHHHHhcchhhHHHHhcCCCchhhhHHH-
Confidence 999999999999999999963 3 5553 4567788888774 666544 57899999999999999999999999999
Q ss_pred HHHHhHHHHHhhhcCC
Q 012763 397 TEAARPVLGKYYREPK 412 (457)
Q Consensus 397 ~~~lkp~l~~~y~e~~ 412 (457)
+.+++++.|+|++
T Consensus 191 ---~~~~v~~~~~~~g 203 (204)
T cd03506 191 ---VAPLVRELCKKHG 203 (204)
T ss_pred ---HHHHHHHHHHHhC
Confidence 5667777777765
No 11
>cd03514 CrtR_beta-carotene-hydroxylase Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae. Carotenoids are important natural pigments; zeaxanthin and lutein are the only dietary carotenoids that accumulate in the macular region of the retina and lens. It is proposed that these carotenoids protect ocular tissues against photooxidative damage. CrtR does not show overall amino acid sequence similarity to the beta-carotene hydroxylases similar to CrtZ, an astaxanthin biosynthetic beta-carotene hydroxylase. However, CrtR does show sequence similarity to the green alga, Haematococcus pluvialis, beta-carotene ketolase (CrtW), which converts beta-carotene to canthaxanthin. Sequences of the CrtR_beta-carotene-hydroxylase domain family, as well as, the CrtW_beta-carotene-ketolase domain family appear to be structurally related
Probab=100.00 E-value=2.7e-33 Score=265.96 Aligned_cols=185 Identities=25% Similarity=0.357 Sum_probs=138.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccccCCCcCCChhHHHHHHHHHhccccChhhHhHhhhccccCCCCCCCCCccccc
Q 012763 152 NNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPL 231 (457)
Q Consensus 152 ~~w~~~~l~~~~~G~~~~~l~vl~HD~~Hgs~~~~~~lN~~vG~l~~~~~g~p~~~wr~~H~~HH~~tn~~e~Dpd~~p~ 231 (457)
..|+..++++++.|+.+.++++++|||+|++++++|++|+++|.+++.+++.|+..||..|+.||+++|+.++|||+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~Hda~H~~~~~~~~~N~~~g~~~~~~~~~~~~~w~~~H~~HH~~~~~~~~DpD~~-- 96 (207)
T cd03514 19 ISYLPLWVCFILNTLSLHLAGTVIHDASHKAASRNRWINELIGHVSAFFLGFPFPVFRRVHMQHHAHTNDPEKDPDHF-- 96 (207)
T ss_pred HccchHHHHHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCcCcCCcCccHH--
Confidence 345555666677888889999999999999999999999999999998999999999999999999999999999963
Q ss_pred cHHHHhhchhhhhhHHhhhhhhHHHHHHHHHHhCCCCCccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCh
Q 012763 232 SEKIYRTLDSATRFLRFKIPFPLLAYPFYLWSRSPGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGP 311 (457)
Q Consensus 232 ~~~~y~~l~~~~r~~~~~~~~~ll~~p~yl~~r~~~~~~~~f~~~~~~f~~~er~~~~~s~l~~~~~~~~l~~l~~~~g~ 311 (457)
.. .. . .. ..++++ ++....+..+.
T Consensus 97 ----~~------~~--------------~---------------------------~~--~~~~~~---~~~~~~~~~~~ 120 (207)
T cd03514 97 ----LL------EW--------------L---------------------------VA--RSLFIT---LLVIAILFGFL 120 (207)
T ss_pred ----HH------HH--------------H---------------------------HH--HHHHHH---HHHHHHHHHHH
Confidence 00 00 0 00 001111 11111122345
Q ss_pred hhHHHHHhHhHHHHHHHHHH-hhhhcccCCCCCCCCCCCCcccccccceEeeccccccccccccccCcccchhcCCCCCC
Q 012763 312 MQLLKLYGLPYWIFVMWLDL-VTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPH 390 (457)
Q Consensus 312 ~~~l~~~llP~li~~~~l~~-v~~l~H~g~~~~vp~~~~~ew~~~r~~l~Tid~~~g~ln~l~~ninyHveHHLfP~IP~ 390 (457)
+..+++|++|.++.+.++.+ .++++|.+.++ +++|+..+. ....+++++++|+|||+|||+||+||+
T Consensus 121 ~~~~l~~~iP~l~~~~~l~~~~~~~~H~~~~~------~~~~~~~~~------~~~~l~~~l~~~~nyH~~HHL~P~IP~ 188 (207)
T cd03514 121 WELLNLWFLPALIVGTYLALFFDWLPHHPFEE------TQRWDNSRV------YPSKLLNPLIMGQNYHLVHHLWPSIPW 188 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeeCccCCCC------ccchhhhhc------ccchhHheeecCCchhHHHhCCCCCch
Confidence 56788999999999999885 66888885432 234433211 111355999999999999999999999
Q ss_pred CCHHHHHHHHhHHHHH
Q 012763 391 YHLIEATEAARPVLGK 406 (457)
Q Consensus 391 y~Lp~a~~~lkp~l~~ 406 (457)
||||++++++|+++++
T Consensus 189 y~Lp~a~~~~~~~~~~ 204 (207)
T cd03514 189 YRYPEAYYANKPLLDA 204 (207)
T ss_pred hhhHHHHHHhHHHHhh
Confidence 9999999999988764
No 12
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=99.97 E-value=1.3e-30 Score=258.60 Aligned_cols=249 Identities=20% Similarity=0.248 Sum_probs=152.0
Q ss_pred ccccccCcchhHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHhhhcccccCCCcCCChhHHHHHHHHH
Q 012763 120 KHCWVKDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVVW-PLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLH 198 (457)
Q Consensus 120 k~~f~~~~~~s~~~l~~~~~~i~~l~~~a~~~~~w~~~-~l~~~~~G~~~~~l~vl~HD~~Hgs~~~~~~lN~~vG~l~~ 198 (457)
|++|++|++.....++..++.++++.++ ...+|+.. ++++++.|+++.++++++|||+|+++|+++++|+++|.+++
T Consensus 9 ~~L~~~~~~~~~~~~~~v~~~~~~~~~l--~~~sw~~~ll~a~vi~~~~~~~l~~l~Hd~~H~~~f~~~~~N~~~g~~~~ 86 (289)
T cd03508 9 KKLFGPDPLTKWVVLGVVLLQIITAYLL--RDSSWWKILLVAYFFGGTINHSLFLAIHEISHNLAFGKPLWNRLFGIFAN 86 (289)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCChHHHHHHHHHHH
Confidence 4788999988777766666555443322 23345544 44555667777899999999999999999999999999988
Q ss_pred hccccChh-hHhHhhhccccCCCCCCCCCccccccH-HHHhhchhhhhhHHhhhhhhHHHHHHHHHHhCCCCCccccCCC
Q 012763 199 SSILVPYH-GWRISHRTHHQNHGHVENDESWHPLSE-KIYRTLDSATRFLRFKIPFPLLAYPFYLWSRSPGKTGSHFDPN 276 (457)
Q Consensus 199 ~~~g~p~~-~wr~~H~~HH~~tn~~e~Dpd~~p~~~-~~y~~l~~~~r~~~~~~~~~ll~~p~yl~~r~~~~~~~~f~~~ 276 (457)
.++|.|+. .||..|+.||+++|+.+.|||+.+..+ +.++.. ..+ .+....++++...|.... .
T Consensus 87 ~~~g~p~~~~~r~~H~~HH~~~n~~~~DpDi~~~~~~~l~~~~--~g~------~~~~~~~~~~~~~rp~~~---~---- 151 (289)
T cd03508 87 LPIGVPYSISFKKYHLEHHRYLGEDGLDTDIPTEFEGKLFSTV--LGK------AIWVTLQPFFYALRPLFV---R---- 151 (289)
T ss_pred HHhcCChhhHHHHHHHHhccCCCCCCCCCCcchHHHHHHHhCc--hHH------HHHHHHHHHHHHhccccc---C----
Confidence 99999998 599999999999999899999875221 222211 111 011112333333332111 0
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHhHhHHHHHHHHHHhhhhcccCCCCCCCCCCCCcccccc
Q 012763 277 SDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLR 356 (457)
Q Consensus 277 ~~~f~~~er~~~~~s~l~~~~~~~~l~~l~~~~g~~~~l~~~llP~li~~~~l~~v~~l~H~g~~~~vp~~~~~ew~~~r 356 (457)
.++..+.. +.+.+..+++. +++.+.+|++.++ |+++.+..+..+ |- ..++...|+|+...
T Consensus 152 ---~~~~~~~~-~~n~~~~~~~~---~~l~~~~G~~~~l--yll~~~~~~~~~-------~p----~~g~~i~Eh~~~~~ 211 (289)
T cd03508 152 ---PKPPTRLE-VINIVVQITFD---YLIYYFFGWKSLA--YLLLGSFLGGGL-------HP----LAGHFISEHYVFTG 211 (289)
T ss_pred ---CCcchhHH-HHHHHHHHHHH---HHHHHHhCcHHHH--HHHHHHHHHHhh-------cc----cccccccccccccc
Confidence 01112222 23333222222 2234566776543 444444333210 11 12222234444332
Q ss_pred cceEeeccccccccccccccCcccchhcCCCCCCCCHHHHHHHHhHHHHHhhhc
Q 012763 357 GGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYRE 410 (457)
Q Consensus 357 ~~l~Tid~~~g~ln~l~~ninyHveHHLfP~IP~y~Lp~a~~~lkp~l~~~y~e 410 (457)
....|.+ .|+|+|++++|+|||.|||+||+||+|+||++++. .+++|.+
T Consensus 212 ~~~~t~S-~y~~~~~~~~n~~yH~~HH~~p~iP~~~Lp~~~~~----~~~~~~~ 260 (289)
T cd03508 212 KGQETYS-YYGPLNLLTFNVGYHNEHHDFPYIPGTRLPKLRKI----APEFYDN 260 (289)
T ss_pred cCcCCcc-chHHHHHHhhccChHHHhcCCCCCCcccHHHHHHH----CHHHHhC
Confidence 2122322 23889999999999999999999999999998776 4555655
No 13
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=99.97 E-value=5.9e-30 Score=254.17 Aligned_cols=221 Identities=21% Similarity=0.240 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCcCCChhHHHHHHHHHhccccChhhHhHhhhccccCCC--CCCCCCccccccHHHHh
Q 012763 160 YWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHG--HVENDESWHPLSEKIYR 237 (457)
Q Consensus 160 ~~~~~G~~~~~l~vl~HD~~Hgs~~~~~~lN~~vG~l~~~~~g~p~~~wr~~H~~HH~~tn--~~e~Dpd~~p~~~~~y~ 237 (457)
+.+++|......++++|||+|+++||+|++|+++|.++ ..++.|+..||.+|+.||+++| ++++|||....+.++++
T Consensus 30 ~~~~~~~~~~~~~~l~Hd~~Hg~~~~~~~~N~~~g~~~-~~l~~p~~~wr~~H~~HH~~~nl~~~~~Dpd~~~~~~~~~~ 108 (288)
T cd03509 30 ATLLLIPLAALHSSLQHELLHGHPTRSRWVNEALGYPP-LALWYPYTRYRDTHLAHHRDEDLTDPGDDPESNYLSPEQWA 108 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCcccChHHHHHHHHHH-HHHhcCHHHHHHHHHHHcCCCCCCCCCCCCccceecHHHHh
Confidence 44556777777789999999999999999999999885 4556899999999999999999 44689998877777888
Q ss_pred hchhhhhhHH-h-hhhhhH-HHHHHHH---HHhCCCCCccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCh
Q 012763 238 TLDSATRFLR-F-KIPFPL-LAYPFYL---WSRSPGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGP 311 (457)
Q Consensus 238 ~l~~~~r~~~-~-~~~~~l-l~~p~yl---~~r~~~~~~~~f~~~~~~f~~~er~~~~~s~l~~~~~~~~l~~l~~~~g~ 311 (457)
++..+++... . ..+... +..|.+. ..+... ..+.++++.....-....+..+++++.+....|+
T Consensus 109 ~~~~~~r~~~~~~~~~~~~~l~gp~l~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (288)
T cd03509 109 RLPRWQRALLRANNTLLGRLILGPPLGLIAFARDEF----------RALRAGDRAALRAWLLHAALLAPLLAWLQLSAGI 178 (288)
T ss_pred hCcHHHHHHHHHhhcchhHHhhhhHHHHHHHHHHHH----------HHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 7766554431 1 111111 1113221 111110 0112223222211110001111111122222232
Q ss_pred hhHHHHHhHhHHHHHH-HHHHhhhhcccCCCCCCCCCCCCcccccccceEeeccccccccccccccCcccchhcCCCCCC
Q 012763 312 MQLLKLYGLPYWIFVM-WLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPH 390 (457)
Q Consensus 312 ~~~l~~~llP~li~~~-~l~~v~~l~H~g~~~~vp~~~~~ew~~~r~~l~Tid~~~g~ln~l~~ninyHveHHLfP~IP~ 390 (457)
. .++|++|.+..+. ...+.++.||.+.++ + + ....+++.+ ++++++++|+|||+|||++|+||+
T Consensus 179 -~-~~~~~l~~~~la~~~~~~~~~~Eh~~~~~--~--~--------~rs~~~~~~-~~~~~l~~ninyH~~HH~~P~vP~ 243 (288)
T cd03509 179 -P-WWAYLLAVYYPALSLAKIRTFLEHRAHER--P--R--------GRTVINEAG-GPLRLLFLNNNLHVVHHDLPTLPW 243 (288)
T ss_pred -H-HHHHHHHHHHHHHHHHhhchHhhccCCCC--c--c--------CCceeeeCc-HHHHHHHhcCCchHhhcCCCCCCc
Confidence 2 2233455544443 345667888885321 1 1 111122322 467999999999999999999999
Q ss_pred CCHHHHHHHHhHHHHH
Q 012763 391 YHLIEATEAARPVLGK 406 (457)
Q Consensus 391 y~Lp~a~~~lkp~l~~ 406 (457)
|+||++|+++++.+.+
T Consensus 244 y~Lp~~h~~~~~~~~~ 259 (288)
T cd03509 244 YDLPRLYRARRDAYLR 259 (288)
T ss_pred ccHHHHHHHhHHHHhh
Confidence 9999999998888554
No 14
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=99.97 E-value=1e-30 Score=250.21 Aligned_cols=243 Identities=28% Similarity=0.439 Sum_probs=147.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCcCCChhHHHHHHHHHhccccChhhHhHhhhccccCCCCCCCCCccccccH
Q 012763 154 WVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSE 233 (457)
Q Consensus 154 w~~~~l~~~~~G~~~~~l~vl~HD~~Hgs~~~~~~lN~~vG~l~~~~~g~p~~~wr~~H~~HH~~tn~~e~Dpd~~p~~~ 233 (457)
|+.+++++++.|..+.+++.++|||+|+++++++++|+++|.+++.+++.|+..||..|+.||+++|++++|||..+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~H~~~H~~~~~~~~~n~~l~~~~~~~~~~~~~~wr~~H~~HH~~~~~~~~Dpd~~~~~~ 82 (257)
T PF00487_consen 3 WWWWLLALLLLGLSFARLFGLAHDAGHGAFFRSRWLNDLLGRLLGLPIGGPYSSWRISHNRHHHYTNNPDRDPDSWTRRL 82 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccChHHHHHHHHHHHHhcCCHhHhheeeeccccccCCccccCccchhhh
Confidence 44455666677888889999999999999999999999999999999999999999999999999999888999764311
Q ss_pred HHHhhchhhhhhHHhhhhhh--HHHHHHHHHHhCCCCCccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCh
Q 012763 234 KIYRTLDSATRFLRFKIPFP--LLAYPFYLWSRSPGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGP 311 (457)
Q Consensus 234 ~~y~~l~~~~r~~~~~~~~~--ll~~p~yl~~r~~~~~~~~f~~~~~~f~~~er~~~~~s~l~~~~~~~~l~~l~~~~g~ 311 (457)
..++.........++...+. .+....+......... ........+.......+.. +.++++++.....++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 154 (257)
T PF00487_consen 83 PPHQPWRPLFSYRRFLFRFLLSLFFPIWYFIFFFRKRR-------MRRRRKRPRRYLILAALLL-ALLLALLAALFFFSP 154 (257)
T ss_pred hhhhhhhhhhhhhhccccccccccccchhhhhhccccc-------cccccccchhHHHHHHHhh-hhhhhhhhhhccccc
Confidence 11111111111111111110 0000001100000000 0000001011112222222 222222222344555
Q ss_pred hhHHHHHhHhHHHHHHHHHHhhhhcccCCCCCCCCCCCCcccccccceE-eecc-ccccccccccccCcccchhcCCCCC
Q 012763 312 MQLLKLYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLT-TLDR-DYGWFNNIHHDIGTHVIHHLFPQIP 389 (457)
Q Consensus 312 ~~~l~~~llP~li~~~~l~~v~~l~H~g~~~~vp~~~~~ew~~~r~~l~-Tid~-~~g~ln~l~~ninyHveHHLfP~IP 389 (457)
+..+++|++|.++...++..+++++|.+.+. .+ ..+..++...++. +.+. ...+++++++|+|||+|||+||+||
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~HHl~P~vp 231 (257)
T PF00487_consen 155 WWALLLFLLPFLIGSFFLAFVTYLEHYGLDP-DD--NEDTRDFYYRQLPGSSNVHNSWWLNWLTGGLNYHIEHHLFPGVP 231 (257)
T ss_pred ccchhHHHHHHhHHHHHHHHhhHHhhhcccc-cc--cccccceecccccccccccCchhhhccccCCCChHHhCCCCCcC
Confidence 6778889999999888888999999997532 11 1122233333432 2222 2257799999999999999999999
Q ss_pred CCCHHHHHHHHhHHHHHh
Q 012763 390 HYHLIEATEAARPVLGKY 407 (457)
Q Consensus 390 ~y~Lp~a~~~lkp~l~~~ 407 (457)
+++||++++.+++.++++
T Consensus 232 ~~~l~~~~~~~~~~~~~~ 249 (257)
T PF00487_consen 232 WYNLPEAHPILKEVCPEY 249 (257)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999766655555443
No 15
>cd03510 Rhizobitoxine-FADS-like This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins. Dihydrorhizobitoxine desaturase is reported to be involved in the final step of rhizobitoxine biosynthesis. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=99.97 E-value=8.1e-31 Score=242.63 Aligned_cols=169 Identities=28% Similarity=0.437 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCcCCChhHHHHHHHH-HhccccChhhHhHhhhcc
Q 012763 137 DVVVVFGLAAAAAYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLL-HSSILVPYHGWRISHRTH 215 (457)
Q Consensus 137 ~~~~i~~l~~~a~~~~~w~~~~l~~~~~G~~~~~l~vl~HD~~Hgs~~~~~~lN~~vG~l~-~~~~g~p~~~wr~~H~~H 215 (457)
||++|+++++++.+.++|++++++++++|.++.++++++|||+|++++|++++|+++|.++ +.+++.|+..||..|+.|
T Consensus 1 ~w~~i~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~Hea~H~~l~~~~~~N~~~g~~~~~~p~~~~~~~~r~~H~~H 80 (175)
T cd03510 1 DWLVIAAAVALALAWPNWLAYLLAVLLIGARQRALAILMHDAAHGLLFRNRRLNDFLGNWLAAVPIFQSLAAYRRSHLKH 80 (175)
T ss_pred ChHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHhhhhCCHHHHHHHHHHH
Confidence 3566777777777788898888888899999999999999999999999999999999765 578999999999999999
Q ss_pred ccCCCCCCCCCccccccHHHHhhchhhhhhHHhhhhhhHHHHHHHHHHhCCCCCccccCCCCCCCCchhhHHHHHHHHHH
Q 012763 216 HQNHGHVENDESWHPLSEKIYRTLDSATRFLRFKIPFPLLAYPFYLWSRSPGKTGSHFDPNSDLFVPSERKDVITSTVCW 295 (457)
Q Consensus 216 H~~tn~~e~Dpd~~p~~~~~y~~l~~~~r~~~~~~~~~ll~~p~yl~~r~~~~~~~~f~~~~~~f~~~er~~~~~s~l~~ 295 (457)
|+++|+ ++|||..
T Consensus 81 H~~~~~-~~Dpd~~------------------------------------------------------------------ 93 (175)
T cd03510 81 HRHLGT-EDDPDLA------------------------------------------------------------------ 93 (175)
T ss_pred hCccCC-CCCCcHH------------------------------------------------------------------
Confidence 999999 8999841
Q ss_pred HHHHHHHHHHHHHhChhhHHHHHhHhHHHHHHHH-HHhhhhcccCCCCCCCCCCCCcccccccceEeecccccccc-ccc
Q 012763 296 TAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWL-DLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFN-NIH 373 (457)
Q Consensus 296 ~~~~~~l~~l~~~~g~~~~l~~~llP~li~~~~l-~~v~~l~H~g~~~~vp~~~~~ew~~~r~~l~Tid~~~g~ln-~l~ 373 (457)
.++++|++|+++....+ .+.+..+|.+.++. ++.. ..+.+|+. .+|++ +|.
T Consensus 94 -----------------~~~~~W~~P~~~~~~~~~~~~~~~eH~~~~~~-----~~~~---~~~tr~~~--~~~~~r~l~ 146 (175)
T cd03510 94 -----------------LYLLLWLVPLLTVFPLIGRIREIAEHAGVPAD-----EDPD---ARNTRTTF--GGWIERLLF 146 (175)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC-----Ccch---hhcCcccc--ccHHHHHHH
Confidence 23456777777766544 45567799875431 1110 01223332 25664 554
Q ss_pred --cccCcccchhcCCCCCCCCHHHHHHH
Q 012763 374 --HDIGTHVIHHLFPQIPHYHLIEATEA 399 (457)
Q Consensus 374 --~ninyHveHHLfP~IP~y~Lp~a~~~ 399 (457)
.|+|||.|||+||+||+|+||++|+.
T Consensus 147 ~p~~~~YH~eHHl~P~vP~~~Lp~~h~~ 174 (175)
T cd03510 147 APHNINYHLEHHLFPAVPFYNLPKAHRI 174 (175)
T ss_pred cccCCcHHHHHhCCcCCchhhHHHHHHh
Confidence 59999999999999999999999875
No 16
>PLN02579 sphingolipid delta-4 desaturase
Probab=99.97 E-value=2.5e-29 Score=252.42 Aligned_cols=266 Identities=20% Similarity=0.229 Sum_probs=152.3
Q ss_pred CCCCCCCCCC-HHHHHHHcc--ccccccCcchhHHHHHHHHHHHHHHHHHHHH--hhhHHHHHH-HHHHHHHHHHHHHhh
Q 012763 101 FDPGAPPPFK-LADIRAAIP--KHCWVKDPWKSMSYVVRDVVVVFGLAAAAAY--LNNWVVWPL-YWAAQGTMFWALFVL 174 (457)
Q Consensus 101 ~~~~~~~~~~-l~~ir~~ip--k~~f~~~~~~s~~~l~~~~~~i~~l~~~a~~--~~~w~~~~l-~~~~~G~~~~~l~vl 174 (457)
+...++|.-+ .++|.++.| ++++..|+.....-++.. ++..+++++ ..+|+.+++ ++++.|+...+++++
T Consensus 16 w~~~~~~h~~rr~~il~~ype~~~l~~~d~~~~~k~~~~v----~~~~~~~~l~~~~~w~~~l~~a~~~~g~~~~~lf~~ 91 (323)
T PLN02579 16 WSYTDEPHASRRREILSKYPQIKELFGPDPWAFPKIAAVV----LLQLCTATLLHDAGWPKILLVAYFFGGFLNHNLFLA 91 (323)
T ss_pred ECCchhhHHHHHHHHHHhchHhhcccCCCchHHHHHHHHH----HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444323 346666667 367766665433222111 111122222 245665555 455677777888999
Q ss_pred hcccccCCCcCCChhHHHHHHHHHhccccChh-hHhHhhhccccCCCCCCCCCccccccHHHHhhchhhhhhHHhhhhhh
Q 012763 175 GHDCGHGSFSNDHKLNSVVGHLLHSSILVPYH-GWRISHRTHHQNHGHVENDESWHPLSEKIYRTLDSATRFLRFKIPFP 253 (457)
Q Consensus 175 ~HD~~Hgs~~~~~~lN~~vG~l~~~~~g~p~~-~wr~~H~~HH~~tn~~e~Dpd~~p~~~~~y~~l~~~~r~~~~~~~~~ 253 (457)
+|||+|+++|+++++|+++|.++++++|.|+. +||..|+.||+++|..+.|||+... .+++-. +..+. ..+.
T Consensus 92 ~HD~~Hg~~f~~~~~N~~lg~~~~l~~g~~~~~~~~~~H~~HH~~~n~~~~D~Di~t~--~E~~l~---~~~~~--~~~~ 164 (323)
T PLN02579 92 IHELSHNLAFKTPVYNRWLGIFANLPIGIPMSVTFQKYHLEHHRFQGVDGIDMDIPSQ--GEARLV---RNTLS--KIVW 164 (323)
T ss_pred HHHhhHhhhcCCHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHccCCCCCCCCCCCCch--hhHHHH---HHHHH--HHHH
Confidence 99999999999999999999999889999997 7999999999999998999997532 222211 11110 0011
Q ss_pred HHHHHHHHHHhCCCCCccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHhHhHHHHHHHHHHhh
Q 012763 254 LLAYPFYLWSRSPGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVT 333 (457)
Q Consensus 254 ll~~p~yl~~r~~~~~~~~f~~~~~~f~~~er~~~~~s~l~~~~~~~~l~~l~~~~g~~~~l~~~llP~li~~~~l~~v~ 333 (457)
.+..++++..| +.. +.+ .+..+.. +++.++.+ ++.+++.+..|+..++ +.+++. .++..+.
T Consensus 165 ~~~~~~f~~~r-p~~----~~~-----~~~~~~~-~in~~~~~---~~~~~l~~~~G~~~ll-yl~~~~-~~~~~lh--- 225 (323)
T PLN02579 165 VFLQLFFYALR-PLF----VNP-----KPPGLWE-FINLLTQI---AFDAALVYFAGWKSLA-YLILST-FLGGGLH--- 225 (323)
T ss_pred HHHHHHHHHhh-HHh----hcc-----CCchHHH-HHHHHHHH---HHHHHHHHHHCHHHHH-HHHHHH-HHhcccc---
Confidence 12234433333 110 110 1112222 23333322 2223345556776644 222222 2221111
Q ss_pred hhcccCCCCCCCCCCCCcccccccceEeeccccccccccccccCcccchhcCCCCCCCCHHHHHHHHhHHHHHhhhc
Q 012763 334 YLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYRE 410 (457)
Q Consensus 334 ~l~H~g~~~~vp~~~~~ew~~~r~~l~Tid~~~g~ln~l~~ninyHveHHLfP~IP~y~Lp~a~~~lkp~l~~~y~e 410 (457)
+..++..++.|...+.+- |.. -||++|++++|+|||.|||+||.||+|+||+ ++++.+++|+.
T Consensus 226 --------p~~g~~~~ehy~~~~~~e-tys-yyg~ln~l~~NigYH~eHH~fP~IP~~~Lp~----l~~~~pe~y~~ 288 (323)
T PLN02579 226 --------PMAGHFISEHYVFNPGQE-TYS-YYGPLNLLTWNVGYHNEHHDFPRIPGSKLHK----VKEIAPEYYDN 288 (323)
T ss_pred --------cccceeeccceeccCCCC-cee-ehhHHHHHhhcccccHhhcCCCCCchhhHHH----HHHhCHHHHhC
Confidence 111211122222222221 321 2489999999999999999999999999999 56678888875
No 17
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. Th
Probab=99.96 E-value=8.1e-29 Score=237.10 Aligned_cols=189 Identities=22% Similarity=0.311 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccCCCc-CCChhHHHHHHHHH-hccccChhhHhHhhhccccCCCCCCCCCccccccHH
Q 012763 157 WPLYWAAQGTMFWALFVLGHDCGHGSFS-NDHKLNSVVGHLLH-SSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEK 234 (457)
Q Consensus 157 ~~l~~~~~G~~~~~l~vl~HD~~Hgs~~-~~~~lN~~vG~l~~-~~~g~p~~~wr~~H~~HH~~tn~~e~Dpd~~p~~~~ 234 (457)
.++.++++|+.+.++++++|||+|++++ +++++|+++|.+++ ++.+.|+..||..|+.||+++|++ +|||+.+.++.
T Consensus 32 ~~~~~~~~g~l~~glfi~~HDa~Hg~~~~~~~~~N~~iG~~~~~l~~g~~~~~~~~~H~~HH~~~~~~-~DpD~~~~~~~ 110 (225)
T cd03513 32 IAAVVLLQTFLHTGLFIIAHDAMHGSLAPGNPRLNRAIGRLCLFLYAGFSYDRLLRKHHLHHRHPGTA-KDPDFHKGNPS 110 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHcCCCCCC-CCCCCCCCCCC
Confidence 3345566899999999999999999999 79999999999985 678999999999999999999996 99998764320
Q ss_pred HHhhchhhhhhHHhhhhhhHHHHHHHHHHhCCCCCccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhChhhH
Q 012763 235 IYRTLDSATRFLRFKIPFPLLAYPFYLWSRSPGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQL 314 (457)
Q Consensus 235 ~y~~l~~~~r~~~~~~~~~ll~~p~yl~~r~~~~~~~~f~~~~~~f~~~er~~~~~s~l~~~~~~~~l~~l~~~~g~~~~ 314 (457)
+..+++.. +.+. + + ...+++.-.+++ .++ ......+...+
T Consensus 111 ---------~~~~wy~~----------f~~~-------y------~---~~~qli~l~ivw----~~~-l~~~~~~~~~~ 150 (225)
T cd03513 111 ---------GFLPWYLH----------FMSN-------Y------F---GWRQLAILAAVW----LLL-LGLGSAPLANL 150 (225)
T ss_pred ---------ChHHHHHH----------HHHh-------H------h---HHHHHHHHHHHH----HHH-HHHHcccHHHH
Confidence 00111000 0000 0 0 011111111111 111 11112356678
Q ss_pred HHHHhHhHHHHHHHHHHh-hhhcccCCCCCCCCCCCCcccccccceEeecccccccccc-ccccCcccchhcCCCCCCCC
Q 012763 315 LKLYGLPYWIFVMWLDLV-TYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNI-HHDIGTHVIHHLFPQIPHYH 392 (457)
Q Consensus 315 l~~~llP~li~~~~l~~v-~~l~H~g~~~~vp~~~~~ew~~~r~~l~Tid~~~g~ln~l-~~ninyHveHHLfP~IP~y~ 392 (457)
+++|++|.++.++++.++ |++.|.. .+.|..+. + +.+|++. .+|++++ +.++|||.|||+||+||||+
T Consensus 151 ~~~~~~P~l~~~~~l~~f~T~lpH~~--~~~~~~~~------~-~a~~~~~-~~~~~~l~c~~fgyH~eHH~fP~~Pw~~ 220 (225)
T cd03513 151 LLFWALPLILSSLQLFYFGTWLPHRP--GRGGFADR------H-RARSSRL-SPVLSFLTCYHFGYHHEHHLSPSTPWWR 220 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCC--CCCCCCCc------c-cceecCc-cHHHHHHHHHhcCcchhhccCCCCCccc
Confidence 999999999999999887 8999973 33343221 1 1224321 2678886 48899999999999999999
Q ss_pred HHHH
Q 012763 393 LIEA 396 (457)
Q Consensus 393 Lp~a 396 (457)
||++
T Consensus 221 Lp~~ 224 (225)
T cd03513 221 LPEL 224 (225)
T ss_pred Cccc
Confidence 9985
No 18
>KOG4232 consensus Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase [Lipid transport and metabolism]
Probab=99.94 E-value=8.6e-27 Score=234.43 Aligned_cols=302 Identities=15% Similarity=0.160 Sum_probs=169.2
Q ss_pred HHHHHHHccc-cccccCcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCcCCChh
Q 012763 111 LADIRAAIPK-HCWVKDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKL 189 (457)
Q Consensus 111 l~~ir~~ipk-~~f~~~~~~s~~~l~~~~~~i~~l~~~a~~~~~w~~~~l~~~~~G~~~~~l~vl~HD~~Hgs~~~~~~l 189 (457)
-+++|+.+++ ++++.++...+...+.+++..++.+.+.+ ...++.+++.|+.+++.++++||.||.+.+|++++
T Consensus 101 f~klr~~~~~~gl~~~~~~ffl~~~l~~i~~~~~a~~~i~-----~~~l~~a~Ll~~a~~Qs~~l~Hd~gH~~i~~~~~w 175 (430)
T KOG4232|consen 101 FRKLREKLEDMGLMDLNKTFFLHLLLLIILYLVLAWLLIY-----LLSLISAVLLGLAWAQSGWLQHDYGHLSIFKNSKW 175 (430)
T ss_pred HHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcccccccccccccH
Confidence 4577777774 66666665555444444433322222221 11456777889999999999999999999999999
Q ss_pred HHHHHHHHH-hccccChhhHhHhhhccccCCCCCCCCCccccccH---HHHhh--chhhhhhHH-hh---hhhhHHHHHH
Q 012763 190 NSVVGHLLH-SSILVPYHGWRISHRTHHQNHGHVENDESWHPLSE---KIYRT--LDSATRFLR-FK---IPFPLLAYPF 259 (457)
Q Consensus 190 N~~vG~l~~-~~~g~p~~~wr~~H~~HH~~tn~~e~Dpd~~p~~~---~~y~~--l~~~~r~~~-~~---~~~~ll~~p~ 259 (457)
|+++..+.+ ...|.|..+|+..|+.||.++|..++|||+...+. ..... .++.++... +. ..+...+.|+
T Consensus 176 N~~~~~fv~n~L~G~sa~WW~~~H~~HHa~pN~~~~DpDi~~~P~fl~g~~~~~~~~k~krk~~~~~~qh~yf~~~~~p~ 255 (430)
T KOG4232|consen 176 NHLAQKFVGNHLKGFSAAWWKSHHNQHHAAPNSLDKDPDIDFEPAFLLGDPNSHEYGKKKRKYTPYPEQHLYFFLIGPPF 255 (430)
T ss_pred HHHHHHHHhhhcccccHHHHHHHHhhhhccCccCCCCccccccchhhhCCCchhhhcccceeEeecccceEEEEeccchH
Confidence 999999887 47899999999999999999999999999753221 00000 000111100 00 0011111122
Q ss_pred HHHHhCCCCCccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHhHhH----HHHHHHHHHhh-h
Q 012763 260 YLWSRSPGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPY----WIFVMWLDLVT-Y 334 (457)
Q Consensus 260 yl~~r~~~~~~~~f~~~~~~f~~~er~~~~~s~l~~~~~~~~l~~l~~~~g~~~~l~~~llP~----li~~~~l~~v~-~ 334 (457)
+..+-.. ....-+......+.+.++..-...-++.+...+ +.+..+..+|. +.++.|...++ .
T Consensus 256 l~~~~~~-~~~~~~~~~~~~w~Dl~~~~~~~~~~~i~~~~~-----------~~~~~~~~L~~w~~r~~~~~~s~~v~l~ 323 (430)
T KOG4232|consen 256 LRLMWFQ-QSIIFVQTNLLLWYDLYWPDRFYLRAFIYLHWG-----------WGLLLLSCLPNWPIRFLFSSWSFWVTLT 323 (430)
T ss_pred HHHHHHH-HHHHHHHhHHHHHHHhhhhhhHHHhhHHHhcch-----------hhhHHHHhccCchHHHHHHHHHHHHHHh
Confidence 1110000 000000000000000011000000000000111 11111222222 22344444444 6
Q ss_pred hcccCCCCCCCCCCCCcccccccce-Eeecccc-ccccccccccCcccchhcCCCCCCCCHHHHHHHHhHHHHHhhhcCC
Q 012763 335 LHHHGHEDKLPWYRGKEWSYLRGGL-TTLDRDY-GWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPK 412 (457)
Q Consensus 335 l~H~g~~~~vp~~~~~ew~~~r~~l-~Tid~~~-g~ln~l~~ninyHveHHLfP~IP~y~Lp~a~~~lkp~l~~~y~e~~ 412 (457)
++|+. .++....+...+|...|+ +|+|+.. .|++||.+++|+|+||||||+||++||++ +.|.+++.|+|++
T Consensus 324 ~nH~~--~~i~~~~~i~~dw~~~Q~~tT~n~~~~~f~dwl~ghln~qieHHLFPtmpr~nL~~----v~P~Vke~c~k~~ 397 (430)
T KOG4232|consen 324 MNHID--PEIYHEGDIRRDWFSLQLATTINVGPSKFSDWLSGHLNFQIEHHLFPTMPRHNLNK----VAPLVKELCKKHG 397 (430)
T ss_pred hhccc--hhhccCCcchhhHHHHHHhhccccCchhHHHHHHhhhhhhHHhhcCCCCCccchHH----HHHHHHHHHHHcC
Confidence 78883 223222221133444455 3676543 58899999999999999999999999999 7999999999999
Q ss_pred CCCCCchhHHHHHHHHhhcc-EEEccCCc
Q 012763 413 KSGPIPFNLFGDLIRSMSKD-HYVSDNGD 440 (457)
Q Consensus 413 ~s~~lpy~~~~~l~~s~~~~-~~~~~~g~ 440 (457)
+||... .+++++... +-++++++
T Consensus 398 ----l~y~~~-~~~~~~~~~~~~lr~~~n 421 (430)
T KOG4232|consen 398 ----LPYREK-PHFEALGDIIQQLRNSAN 421 (430)
T ss_pred ----Cccccc-hHHHHHHHHHHHhhhccc
Confidence 898544 777776654 44455554
No 19
>KOG2987 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=99.82 E-value=1.4e-19 Score=170.62 Aligned_cols=266 Identities=21% Similarity=0.349 Sum_probs=156.2
Q ss_pred CCCCCCCCCCC-HHHHHHHcc--ccccccCcchhHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHH--HHHHHHHHHHHHh
Q 012763 100 EFDPGAPPPFK-LADIRAAIP--KHCWVKDPWKSMSYVVRDVVVVFGLAAAAAYLN-NWVVWPLY--WAAQGTMFWALFV 173 (457)
Q Consensus 100 ~~~~~~~~~~~-l~~ir~~ip--k~~f~~~~~~s~~~l~~~~~~i~~l~~~a~~~~-~w~~~~l~--~~~~G~~~~~l~v 173 (457)
++...++|..+ .++|.++-| |.+|..||+.-+.-+...++-+.+++ ..-+ .| .|.+. -++-|++-..++.
T Consensus 11 ~W~yTeePHasRR~eIL~kyPeIk~Lfg~dp~~kwvv~~~Vi~Q~~~~~---ll~dl~W-~~il~~AYf~gg~iNhsl~L 86 (324)
T KOG2987|consen 11 EWVYTEEPHASRRKEILAKYPEIKSLFGPDPNLKWVVLGMVILQILAAY---LLRDLDW-KWILFIAYFFGGFINHSLTL 86 (324)
T ss_pred eEEecCCcchhHHHHHHHhChHHHHHhCCCcchHHHHHHHHHHHHHHHH---HHhcccH-HHHHHHHHHhhhhhchhHHH
Confidence 47778888885 669999999 68999999876533332222222111 1222 34 33332 2345666688888
Q ss_pred hhcccccCCCcCC--ChhHHHHHHHHHhccccChh-hHhHhhhccccCCCCCCCCCccccccHH-HHhhchhhhhhHHhh
Q 012763 174 LGHDCGHGSFSND--HKLNSVVGHLLHSSILVPYH-GWRISHRTHHQNHGHVENDESWHPLSEK-IYRTLDSATRFLRFK 249 (457)
Q Consensus 174 l~HD~~Hgs~~~~--~~lN~~vG~l~~~~~g~p~~-~wr~~H~~HH~~tn~~e~Dpd~~p~~~~-~y~~l~~~~r~~~~~ 249 (457)
..||-+|...|.+ +-.|+++|.++.+|+|+|+. +.+..|..||++.+..+-|-|.....+. .+.. ...|.+ .
T Consensus 87 AIHeiSHN~aFg~~rpl~NR~~g~fANLPigvP~siSFkkYHleHHry~G~DgiDtDvPT~~Ea~~f~t--~~~K~i--w 162 (324)
T KOG2987|consen 87 AIHEISHNLAFGTNRPLYNRIFGFFANLPIGVPMSISFKKYHLEHHRYLGVDGIDTDVPTRFEAWLFDT--AFGKLI--W 162 (324)
T ss_pred HHHHhhhhhhcccCchHHHHHHHHhhcCcccCceeeeehhhhhHHhHhcCCccccCCCCchhheehhhh--hhHHHH--H
Confidence 8999999999987 77999999999999999995 8999999999999998999997543321 1211 122221 1
Q ss_pred hhhhHHHHHHHHHHhCCCCCccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHhHhHHHHHHHH
Q 012763 250 IPFPLLAYPFYLWSRSPGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWL 329 (457)
Q Consensus 250 ~~~~ll~~p~yl~~r~~~~~~~~f~~~~~~f~~~er~~~~~s~l~~~~~~~~l~~l~~~~g~~~~l~~~llP~li~~~~l 329 (457)
..++ |++...|-. -..|. +-.+.++ ++++..+.+= +.+...+||..++ +++.+.++
T Consensus 163 ~~lQ----pfFY~fRPl-----~i~pk-----p~t~me~-iN~iiQ~~fd---~li~~f~G~ksl~------Yll~~s~l 218 (324)
T KOG2987|consen 163 VTLQ----PFFYAFRPL-----FIYPK-----PPTDMEF-INTIIQLSFD---LLIVYFFGWKSLA------YLLASSFL 218 (324)
T ss_pred HHHH----HHHHhhhhh-----eecCC-----CchHHHH-HHHHHHHHHH---HHHHHHHhHHHHH------HHHHHHHH
Confidence 1111 221111210 00111 1112222 2322222221 1223446665432 22222222
Q ss_pred HHhhhhcccCCCCCCCCCCCCcccccccceEeeccccccccccccccCcccchhcCCCCCCCCHHHHHHHHhHHHHHhhh
Q 012763 330 DLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYR 409 (457)
Q Consensus 330 ~~v~~l~H~g~~~~vp~~~~~ew~~~r~~l~Tid~~~g~ln~l~~ninyHveHHLfP~IP~y~Lp~a~~~lkp~l~~~y~ 409 (457)
+.- + | +..-+.-+|.+.+.+++ +|.. -||.+|+++.|.|||+|||-||.||.++||+ ++++-+|||.
T Consensus 219 g~g--L-H----P~aGHFisEHY~f~k~~-ETyS-YYGplN~~tfNvGYH~EHHDFP~Ipg~~Lp~----Vr~iApEyYd 285 (324)
T KOG2987|consen 219 GMG--L-H----PIAGHFISEHYMFKKGQ-ETYS-YYGPLNLLTFNVGYHVEHHDFPYIPGSRLPK----VREIAPEYYD 285 (324)
T ss_pred cCC--C-C----cccchhhHhhhhhcCCc-ccee-eecceeeEEEecccccccccCCCCCccccHH----HHHhhHHHhc
Confidence 211 0 1 10011112222333333 2442 2599999999999999999999999999999 6888889997
Q ss_pred c
Q 012763 410 E 410 (457)
Q Consensus 410 e 410 (457)
.
T Consensus 286 ~ 286 (324)
T KOG2987|consen 286 N 286 (324)
T ss_pred C
Confidence 5
No 20
>cd03512 Alkane-hydroxylase Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases. The alk genes in Pseudomonas oleovorans encode conversion of alkanes to acyl CoA. The alkane omega-hydroxylase (AlkB) system is responsible for the initial oxidation of inactivated alkanes. It is a three-component system comprising a soluble NADH-rubredoxin reductase (AlkT), a soluble rubredoxin (AlkG), and the integral membrane oxygenase (AlkB). AlkB utilizes the oxygen rebound mechanism to hydroxylate alkanes. This mechanism involves homolytic cleavage of the C-H bond by an electrophilic metal-oxo intermediate to generate a substrate-based radical. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. The active
Probab=99.82 E-value=1.5e-20 Score=189.03 Aligned_cols=243 Identities=23% Similarity=0.261 Sum_probs=141.0
Q ss_pred hHHHHHHHHHHHHHHHHHH-HhhhcccccCCCcCCChhHHHHHHHHHhccccChhhHhHhhh-ccccCCCCCCCCCcccc
Q 012763 153 NWVVWPLYWAAQGTMFWAL-FVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHR-THHQNHGHVENDESWHP 230 (457)
Q Consensus 153 ~w~~~~l~~~~~G~~~~~l-~vl~HD~~Hgs~~~~~~lN~~vG~l~~~~~g~p~~~wr~~H~-~HH~~tn~~e~Dpd~~p 230 (457)
+|+..+.+++..|+...++ ...+||++| |++++|+++|.++..+.+ +..|+..|+ .||+++++ ++|||...
T Consensus 68 ~~~~~~~~~~~~G~~~g~i~~~~aHel~H----r~~~lnr~lg~~~~~~~~--~~~~~~~H~~~HH~~v~t-p~DP~tar 140 (314)
T cd03512 68 SALEKVGLILSLGLLSGVIGINTAHELIH----RRSRLERWLGKLLLASLL--YGHFAIEHVRGHHRYVAT-PEDPATAR 140 (314)
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHhccC----CCChHHHHHHHHHHHHhc--ccceeeeecccCCCCCCC-CCCccccc
Confidence 4555555556677766545 478888888 679999999999876554 445999998 89999998 79999764
Q ss_pred ccHHHHhhchhhhhhHHhhhhhhHHHHHHHHHHhCCCCCccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 012763 231 LSEKIYRTLDSATRFLRFKIPFPLLAYPFYLWSRSPGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMG 310 (457)
Q Consensus 231 ~~~~~y~~l~~~~r~~~~~~~~~ll~~p~yl~~r~~~~~~~~f~~~~~~f~~~er~~~~~s~l~~~~~~~~l~~l~~~~g 310 (457)
..+..|+-+. |.. ...+ .-+|-.- -.|.. +.+. +.+ .-+.+++...+ +.++++++++..+
T Consensus 141 ~ge~~y~f~~---r~~--~g~~-~~aw~~e-~~rl~-~~g~------~~~--~~~n~~l~~~~----~~~a~~~~~~~~~ 200 (314)
T cd03512 141 RGESFYRFLP---RAL--VGSF-RSAWKLE-KKRLR-RKGR------SPW--SPRNEVLRYLA----LAVALLALAAALG 200 (314)
T ss_pred cCccHHHHHH---HHH--HHHH-HHHHHHH-HHHHH-hcCC------CCC--ccchHHHHHHH----HHHHHHHHHHHHH
Confidence 4443443110 000 0000 0011000 00100 0010 000 11222222222 2233334444455
Q ss_pred hhhHHHHHhHhHHHHHHHHHHhhhhcccCCCCCCCCCCCCcccccccceEeeccccccccccccccCcccchhcCCCCCC
Q 012763 311 PMQLLKLYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPH 390 (457)
Q Consensus 311 ~~~~l~~~llP~li~~~~l~~v~~l~H~g~~~~vp~~~~~ew~~~r~~l~Tid~~~g~ln~l~~ninyHveHHLfP~IP~ 390 (457)
.+..+.++++|.++....+..++|+||.|+..+ ...++ .++..+.+ -+-+.+....|++..|+++|.+||.+|++|+
T Consensus 201 g~~~l~~~l~~~~~g~~~l~~~nY~EHyGL~r~-~~~~g-r~e~~~~~-hSWNs~~~~~n~l~~nl~rHsdHH~~p~~~y 277 (314)
T cd03512 201 GLAGLLFLLIQAFYAKSLLELVNYIEHYGLLRK-KLANG-RYEPVGPR-HSWNSNHIVSNLLLFNLQRHSDHHAHPTRPY 277 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-cCCCC-ccccCCCc-cCcCcCcHHHHHHHHhcchhhhhccCCCCch
Confidence 566778889999888888899999999997432 11111 11111100 0222222345889999999999999999999
Q ss_pred CCHHHHHHHHhHHHHHhhhcCCCCCCCchhHHHHHHHHhhcc
Q 012763 391 YHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKD 432 (457)
Q Consensus 391 y~Lp~a~~~lkp~l~~~y~e~~~s~~lpy~~~~~l~~s~~~~ 432 (457)
+.|+...++ |.++.-|--. +-..++|.+|+.+++.
T Consensus 278 ~~L~~~~~~--p~lP~~y~~m-----~~~al~P~lw~~~m~~ 312 (314)
T cd03512 278 QALRPFPEA--PQLPSGYPVM-----ALLALIPPLWRRVMDP 312 (314)
T ss_pred hhccCCccC--CCCCccHHHH-----HHHHHhhHHHHHhhcc
Confidence 999986553 5555444222 1234678888887654
No 21
>cd01060 Membrane-FADS-like The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the exception of archaea. Membrane FADSs are non-heme, iron-containing, oxygen-dependent enzymes involved in regioselective introduction of double bonds in fatty acyl aliphatic chains. They play an important role in the maintenance of the proper structure and functioning of biological membranes. Alkane hydroxylases are bacterial, integral-membrane di-iron enzymes that share a requirement for iron and oxygen for activity similar to that of membrane FADSs, and are involved in the initial oxidation of inactivated alkanes. Beta-carotene ketolase and beta-carotene hydroxylase are carotenoid biosynthetic enzymes for astaxanthin and zeaxanthin, respectively. This superfamily domain has extensive hydrophobic regions that would
Probab=99.70 E-value=2.1e-17 Score=142.85 Aligned_cols=59 Identities=37% Similarity=0.535 Sum_probs=55.8
Q ss_pred HHHhhhcccccCCCcCCChhHHHHHHHHHhccccChhhHhHhhhccccCCCCCCCCCcc
Q 012763 170 ALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESW 228 (457)
Q Consensus 170 ~l~vl~HD~~Hgs~~~~~~lN~~vG~l~~~~~g~p~~~wr~~H~~HH~~tn~~e~Dpd~ 228 (457)
++..++|||+|+++++++++|++++.+++.+++.|+..|+..|+.||+++++.++|||.
T Consensus 14 ~~~~~~H~~~H~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~H~~HH~~~~~~~~D~~~ 72 (122)
T cd01060 14 GLTVLAHELGHRSFFRSRWLNRLLGALLGLALGGSYGWWRRSHRRHHRYTNTPGKDPDS 72 (122)
T ss_pred HHHHHHHHHhhhhhhccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCcCCCCCCCcc
Confidence 67789999999999999999999999999999999999999999999999997799984
No 22
>COG1398 OLE1 Fatty-acid desaturase [Lipid metabolism]
Probab=98.40 E-value=1.4e-05 Score=77.57 Aligned_cols=51 Identities=24% Similarity=0.317 Sum_probs=41.6
Q ss_pred hccc-ccCCCcCCChhHHHHHHHHHhccccChhhHhHhhhccccCCCCCCCCC
Q 012763 175 GHDC-GHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDE 226 (457)
Q Consensus 175 ~HD~-~Hgs~~~~~~lN~~vG~l~~~~~g~p~~~wr~~H~~HH~~tn~~e~Dp 226 (457)
-|-| +|+++.-.+++.-++.....+....|...|-..|+.||+++ +.+.||
T Consensus 66 ~HRl~sHRa~~~~k~Le~~la~~g~l~~~G~~~~W~~~HR~HHr~t-DTd~DP 117 (289)
T COG1398 66 LHRLWSHRAFKAHKWLEYVLAFWGALTTQGPAIEWVGIHRKHHRKT-DTDQDP 117 (289)
T ss_pred hhhhhhhhhcccchHHHHHHHHHHHhhcCCCceeHHHHHHHhhccc-CCCCCC
Confidence 4655 78888888888877777766677788899999999999999 447777
No 23
>PLN02220 delta-9 acyl-lipid desaturase
Probab=98.17 E-value=3.3e-05 Score=77.31 Aligned_cols=51 Identities=24% Similarity=0.210 Sum_probs=38.5
Q ss_pred hcc-cccCCCcCCChhHHHHHHHHHhccccChhhHhHhhhccccCCCCCCCCC
Q 012763 175 GHD-CGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDE 226 (457)
Q Consensus 175 ~HD-~~Hgs~~~~~~lN~~vG~l~~~~~g~p~~~wr~~H~~HH~~tn~~e~Dp 226 (457)
.|= .+|+++--++++..++..+..+....+...|-..|+.||+++.+ ++||
T Consensus 76 yHRl~sHrsfka~~~l~~~la~~g~~a~Qgs~~~Wv~~HR~HH~~sDt-~~DP 127 (299)
T PLN02220 76 YHRNLAHRSFKLPKWLEYPFAYSALFALQGDPIDWVSTHRFHHQFTDS-DRDP 127 (299)
T ss_pred HHHHHHhhcCcCcHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC-CCCc
Confidence 343 47888887888876666665555556778999999999999966 6676
No 24
>KOG1600 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=97.19 E-value=0.0052 Score=61.21 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=36.9
Q ss_pred cccCCCcCCChhHHHHHHHHHhccccChhhHhHhhhccccCCCCCCCCCc
Q 012763 178 CGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDES 227 (457)
Q Consensus 178 ~~Hgs~~~~~~lN~~vG~l~~~~~g~p~~~wr~~H~~HH~~tn~~e~Dpd 227 (457)
=+|.++.-++++.-++...-.+.+--+...|-..|+.||++|.+ ++||-
T Consensus 91 wsHRSyKa~kpLr~fla~~~~~A~Qg~~~~WvrdHR~HHk~tdT-D~DPh 139 (321)
T KOG1600|consen 91 WSHRSYKAPKPLRYFLAYCNTLAFQGDIIDWVRDHRVHHKFTDT-DADPH 139 (321)
T ss_pred cccccccCCccHHHHHHHHHHHhccCChhHHHhhhhhhcccccc-CCCCC
Confidence 47888888888877776665544434455899999999999977 78873
No 25
>cd03505 Delta9-FADS-like The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide range of bacteria. These enzymes play essential roles in fatty acid metabolism and the regulation of cell membrane fluidity. Acyl-CoA desaturases are the enzymes involved in the CoA-bound desaturation of fatty acids. Mammalian stearoyl-CoA delta-9 desaturase is a key enzyme in the biosynthesis of monounsaturated fatty acids, and in yeast, the delta-9 acyl-CoA desaturase (OLE1) reaction accounts for all de nova unsaturated fatty acid production in Saccharomyces cerevisiae. These non-heme, iron-containing, ER membrane-bound enzymes are part of a three-component enzyme system involving cytochrome b5, cytochrome b5 reductase, and the delta-9 fatty acid desaturase. This complex catalyzes the NADH- and oxygen-dependent i
Probab=97.05 E-value=0.0042 Score=57.73 Aligned_cols=48 Identities=23% Similarity=0.253 Sum_probs=39.6
Q ss_pred cccCCCcCCChhHHHHHHHHHhccccChhhHhHhhhccccCCCCCCCCC
Q 012763 178 CGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDE 226 (457)
Q Consensus 178 ~~Hgs~~~~~~lN~~vG~l~~~~~g~p~~~wr~~H~~HH~~tn~~e~Dp 226 (457)
..|+++.-++++..++..+..+....+...|...|+.||+++.+ ++||
T Consensus 27 ~aHrsfk~~~~l~~~l~~~g~~a~qgs~~~W~~~HR~HH~~sDt-~~DP 74 (178)
T cd03505 27 WAHRSFKAPKPLRIFLAILGSLAGQGSPLWWVADHRLHHRYSDT-DGDP 74 (178)
T ss_pred HhhccCcCcHHHHHHHHHHHHHHcCcCHHHHHHHHHHhhcccCC-CCCC
Confidence 36899988888888777776666677888999999999999976 5676
No 26
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=65.78 E-value=17 Score=34.99 Aligned_cols=58 Identities=12% Similarity=0.101 Sum_probs=35.0
Q ss_pred CHHHHHHHccccccccCcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 012763 110 KLADIRAAIPKHCWVKDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVVWPLYWAAQGTMF 168 (457)
Q Consensus 110 ~l~~ir~~ipk~~f~~~~~~s~~~l~~~~~~i~~l~~~a~~~~~w~~~~l~~~~~G~~~ 168 (457)
++++|+++.- ---+.|++-.++.+...++.+++.+++.+.+++||.|.+..++.|+..
T Consensus 9 ~~~Qi~q~y~-~trk~dp~l~~~ml~a~l~~~~v~v~ig~l~~~~~~~~i~gi~~g~l~ 66 (224)
T PF13829_consen 9 RRKQIWQAYK-MTRKEDPKLPWLMLGAFLGPIAVFVLIGLLFGSWWYWLIIGILLGLLA 66 (224)
T ss_pred HHHHHHHHHH-HHHHHCcchHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 4667777664 223446666665555555555555556666778877776666666543
No 27
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. Th
Probab=49.84 E-value=1.4e+02 Score=28.80 Aligned_cols=12 Identities=25% Similarity=0.365 Sum_probs=10.1
Q ss_pred hhhccccCCCCC
Q 012763 211 SHRTHHQNHGHV 222 (457)
Q Consensus 211 ~H~~HH~~tn~~ 222 (457)
.|+.||.++..+
T Consensus 206 yH~eHH~fP~~P 217 (225)
T cd03513 206 YHHEHHLSPSTP 217 (225)
T ss_pred cchhhccCCCCC
Confidence 699999998763
No 28
>PF09396 Thrombin_light: Thrombin light chain; InterPro: IPR018992 Thrombin is a Na+-activated, allosteric serine protease that functions in blood homeostasis, inflammation and wound healing []. Thrombin (or coagulation factor II) is an enzyme that cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, and (in complex with thrombomodulin) protein C []. Sodium binding is the major driving force behind the procoagulant, prothrombotic and signaling functions of the enzyme, but is dispensable for cleavage of the anticoagulant protein C []. Prothrombin is activated on the surface of a phospholipid membrane where factor Xa removes the activation peptide and cleaves the remaining part into light and heavy chains. This domain corresponds to the light chain of thrombin. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis, 0007596 blood coagulation, 0005576 extracellular region; PDB: 3HKI_D 2OCV_A 3EDX_A 3HK6_C 2PV9_A 2PUX_A 3HK3_A 1HRT_L 1TOC_G 1ETT_L ....
Probab=45.14 E-value=9.2 Score=27.58 Aligned_cols=9 Identities=56% Similarity=1.346 Sum_probs=5.2
Q ss_pred cccCCCCCC
Q 012763 7 SECGLKPLP 15 (457)
Q Consensus 7 ~~~~~~~~~ 15 (457)
.+||+|||=
T Consensus 20 adCG~RPlF 28 (49)
T PF09396_consen 20 ADCGLRPLF 28 (49)
T ss_dssp TTTT--TTT
T ss_pred cccCcchhh
Confidence 359999984
No 29
>PLN02505 omega-6 fatty acid desaturase
Probab=25.14 E-value=1.5e+02 Score=30.96 Aligned_cols=34 Identities=12% Similarity=0.096 Sum_probs=25.3
Q ss_pred HHHHHHHHhhhcccccCCCcCCChhHHHHHHHHH
Q 012763 165 GTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLH 198 (457)
Q Consensus 165 G~~~~~l~vl~HD~~Hgs~~~~~~lN~~vG~l~~ 198 (457)
+..+..++.++|-.-.-...+...+|-.-|.+.+
T Consensus 263 ~~wlv~itylqHt~~~ip~~~~~~W~~~rgAl~t 296 (381)
T PLN02505 263 NAFLVLITYLQHTHPALPHYDSSEWDWLRGALAT 296 (381)
T ss_pred HHHHHHHHHHhccCCCCCccCCCCcChhhcccee
Confidence 3444455688998877778888888988887754
No 30
>PLN02434 fatty acid hydroxylase
Probab=21.43 E-value=3.6e+02 Score=26.31 Aligned_cols=12 Identities=25% Similarity=0.437 Sum_probs=8.8
Q ss_pred HhhhccccCCCC
Q 012763 210 ISHRTHHQNHGH 221 (457)
Q Consensus 210 ~~H~~HH~~tn~ 221 (457)
..|..||.++++
T Consensus 121 llHg~HH~~P~D 132 (237)
T PLN02434 121 LLHGCHHKHPMD 132 (237)
T ss_pred HHHHHhhcCCCC
Confidence 358899987644
Done!