Query 012763
Match_columns 457
No_of_seqs 256 out of 1780
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 15:45:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012763.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012763hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bei_A Prothrombin; serine pro 36.8 11 0.00037 25.6 0.8 9 7-15 15-23 (44)
2 1etr_L Epsilon-thrombin; serin 31.3 15 0.00051 25.6 0.8 8 8-15 21-28 (49)
3 3b9f_L Prothrombin; michaelis 31.3 15 0.00051 25.6 0.8 8 8-15 21-28 (49)
4 3rm2_L Thrombin light chain; s 22.0 28 0.00097 22.7 0.8 8 8-15 8-15 (36)
5 2dae_A KIAA0733 protein; mitog 21.5 63 0.0021 24.4 2.7 15 375-389 8-25 (75)
6 3plv_C 66 kDa U4/U6.U5 small n 11.5 82 0.0028 18.0 0.9 9 8-16 13-21 (21)
7 3cqb_A Probable protease HTPX 5.6 1E+02 0.0035 24.6 -0.6 11 172-182 85-95 (107)
8 2q14_A Phosphohydrolase; BT420 5.0 2.3E+02 0.0078 28.5 1.4 15 171-185 91-105 (410)
9 2kp7_A Crossover junction endo 4.4 4.3E+02 0.015 20.3 2.3 19 394-412 68-86 (87)
10 3b4r_A Putative zinc metallopr 4.0 4E+02 0.014 24.1 2.2 12 173-184 51-62 (224)
No 1
>3bei_A Prothrombin; serine protease, acute phase, blood coagulation, cleavage on basic residues, disease mutation, gamma-carboxyglutamic ACI glycoprotein; HET: NAG; 1.55A {Homo sapiens} PDB: 1tq7_A* 3lu9_A* 3bef_A* 2pgq_A* 1z8j_A* 1z8i_A* 3hk3_A 2pv9_A* 3edx_A* 2pux_A 3hk6_A 3hki_A* 2ocv_A* 1avg_L 2a1d_A*
Probab=36.80 E-value=11 Score=25.63 Aligned_cols=9 Identities=56% Similarity=1.346 Sum_probs=7.0
Q ss_pred cccCCCCCC
Q 012763 7 SECGLKPLP 15 (457)
Q Consensus 7 ~~~~~~~~~ 15 (457)
.+||+|||=
T Consensus 15 ~dCG~RPlF 23 (44)
T 3bei_A 15 ADCGLRPLF 23 (44)
T ss_dssp TTTTCCTTT
T ss_pred cccccchhH
Confidence 359999984
No 2
>1etr_L Epsilon-thrombin; serine proteinase, hydrolase-hydrolase inhibitor complex; HET: MIT; 2.20A {Bos taurus} SCOP: b.47.1.2 PDB: 1bbr_L* 1ets_L* 1ett_L* 1hrt_L 1id5_L 1mkw_L 1mkx_L 1tbq_L 1tbr_L 1toc_A 1ucy_L* 1uvt_L* 1uvu_L* 1vit_L* 1ycp_L 2ody_A*
Probab=31.28 E-value=15 Score=25.59 Aligned_cols=8 Identities=63% Similarity=1.468 Sum_probs=6.6
Q ss_pred ccCCCCCC
Q 012763 8 ECGLKPLP 15 (457)
Q Consensus 8 ~~~~~~~~ 15 (457)
+||+|||=
T Consensus 21 dCG~RPlF 28 (49)
T 1etr_L 21 DCGLRPLF 28 (49)
T ss_dssp TTTCCTTT
T ss_pred ccccchhH
Confidence 49999985
No 3
>3b9f_L Prothrombin; michaelis complex, acute phase, blood coagulation, cleavage of basic residues, disease mutation; HET: NAG FUC SGN IDS; 1.60A {Homo sapiens} PDB: 1tb6_L* 2b5t_A* 1jou_A* 3gis_A 1jmo_L*
Probab=31.28 E-value=15 Score=25.59 Aligned_cols=8 Identities=63% Similarity=1.468 Sum_probs=6.6
Q ss_pred ccCCCCCC
Q 012763 8 ECGLKPLP 15 (457)
Q Consensus 8 ~~~~~~~~ 15 (457)
+||+|||=
T Consensus 21 dCG~RPlF 28 (49)
T 3b9f_L 21 DCGLRPLF 28 (49)
T ss_dssp TTTCCTTT
T ss_pred ccccchhH
Confidence 49999985
No 4
>3rm2_L Thrombin light chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_L* 1a3e_L* 1a46_L* 1a4w_L* 1a5g_L* 1a61_L* 1abi_L* 1abj_L* 1ad8_L* 1ae8_L* 1afe_L* 1a3b_L* 1ai8_L* 1aix_L* 1awf_L* 1awh_A* 1ay6_L* 1b5g_L* 1b7x_A 1ba8_A* ...
Probab=21.97 E-value=28 Score=22.74 Aligned_cols=8 Identities=63% Similarity=1.468 Sum_probs=6.6
Q ss_pred ccCCCCCC
Q 012763 8 ECGLKPLP 15 (457)
Q Consensus 8 ~~~~~~~~ 15 (457)
.||++|+-
T Consensus 8 ~CG~rPlf 15 (36)
T 3rm2_L 8 DCGLRPLF 15 (36)
T ss_dssp TTTCCTTT
T ss_pred ccccCchh
Confidence 59999986
No 5
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.45 E-value=63 Score=24.42 Aligned_cols=15 Identities=47% Similarity=1.057 Sum_probs=11.1
Q ss_pred ccCcccchhc---CCCCC
Q 012763 375 DIGTHVIHHL---FPQIP 389 (457)
Q Consensus 375 ninyHveHHL---fP~IP 389 (457)
.+++|+-|+| ||.||
T Consensus 8 q~d~qvfheLkQrFPEvP 25 (75)
T 2dae_A 8 QIDFQVLHDLRQKFPEVP 25 (75)
T ss_dssp CCCHHHHHHHHHHSSSSC
T ss_pred chHHHHHHHHHHhcccCc
Confidence 3567888887 78887
No 6
>3plv_C 66 kDa U4/U6.U5 small nuclear ribonucleoprotein C; ubiquitin-like, peptide binding protein; 1.90A {Saccharomyces cerevisiae}
Probab=11.48 E-value=82 Score=18.04 Aligned_cols=9 Identities=44% Similarity=0.722 Sum_probs=7.0
Q ss_pred ccCCCCCCC.....
Q 012763 8 ECGLKPLPH..... 16 (457)
Q Consensus 8 ~~~~~~~~~..... 16 (457)
+-||+|+|+
T Consensus 13 ~lGLkplp~..... 21 (21)
T 3plv_C 13 SLGLKLIPPxxxxx 26 (26)
T ss_dssp HTTCCCCCC.....
T ss_pred HcCCCCCCC.....
Confidence 369999983
No 7
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=5.65 E-value=1e+02 Score=24.60 Aligned_cols=11 Identities=36% Similarity=0.525 Sum_probs=8.7
Q ss_pred HhhhcccccCC
Q 012763 172 FVLGHDCGHGS 182 (457)
Q Consensus 172 ~vl~HD~~Hgs 182 (457)
++++||.+|..
T Consensus 85 aVlaHElgH~~ 95 (107)
T 3cqb_A 85 AVLAHEVSHIA 95 (107)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 47899999964
No 8
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=5.03 E-value=2.3e+02 Score=28.50 Aligned_cols=15 Identities=53% Similarity=0.862 Sum_probs=11.6
Q ss_pred HHhhhcccccCCCcC
Q 012763 171 LFVLGHDCGHGSFSN 185 (457)
Q Consensus 171 l~vl~HD~~Hgs~~~ 185 (457)
+..|.||.||+.|+.
T Consensus 91 ~AaLlHDiGh~PfsH 105 (410)
T 2q14_A 91 AAILLHDIGHGPFSH 105 (410)
T ss_dssp HHHHHTTTTCCTTHH
T ss_pred HHHHHhccCCCcccc
Confidence 346789999998864
No 9
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=4.41 E-value=4.3e+02 Score=20.28 Aligned_cols=19 Identities=5% Similarity=-0.172 Sum_probs=15.6
Q ss_pred HHHHHHHhHHHHHhhhcCC
Q 012763 394 IEATEAARPVLGKYYREPK 412 (457)
Q Consensus 394 p~a~~~lkp~l~~~y~e~~ 412 (457)
++.-+.|...+.+||+|.+
T Consensus 68 ~ki~~~L~e~L~~~c~eng 86 (87)
T 2kp7_A 68 DRLCRMLDEKLKQHLASGG 86 (87)
T ss_dssp HHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 6777778899999998865
No 10
>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}
Probab=4.05 E-value=4e+02 Score=24.10 Aligned_cols=12 Identities=33% Similarity=0.564 Sum_probs=9.2
Q ss_pred hhhcccccCCCc
Q 012763 173 VLGHDCGHGSFS 184 (457)
Q Consensus 173 vl~HD~~Hgs~~ 184 (457)
++.||.+|.-..
T Consensus 51 v~~HElgH~~~A 62 (224)
T 3b4r_A 51 VVLHELGHSYVA 62 (224)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 678999997543
Done!