BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012767
(456 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 480 bits (1236), Expect = e-136, Method: Compositional matrix adjust.
Identities = 243/380 (63%), Positives = 286/380 (75%), Gaps = 7/380 (1%)
Query: 1 MSAIVDMAGMDVLCCDKTGTLTLNKLTVDKNLIEIFAGGVDADTVVLMAARASQVENLDV 60
M+AI +MAGMDVLC DKTGTLTLNKL+VDKNL+E+F GV+ D V+L AA AS+VEN D
Sbjct: 314 MTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLVEVFCKGVEKDQVLLFAAMASRVENQDA 373
Query: 61 IDAAIVGMLADPKEARADIQEVHFLPFDPTGKRTALTYIDSEGKMHRVTKGSPEQILNLL 120
IDAA+VGMLADPKEARA I+EVHFLPF+P KRTALTYID G HRV+KG+PEQIL L
Sbjct: 374 IDAAMVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDGSGNWHRVSKGAPEQILELA 433
Query: 121 HNKSKIGRKVNAVINKFAERGLRSLAVAYQEVPEGSKESSGSPWQFIGLIPLFDPPIHDS 180
+ + +KV ++I+K+AERGLRSLAVA Q VPE +KES G+PW+F+GL+PLFDPP HDS
Sbjct: 434 KASNDLSKKVLSIIDKYAERGLRSLAVARQVVPEKTKESPGAPWEFVGLLPLFDPPRHDS 493
Query: 181 AETIRRALSLGLGVKMITGDQLAIAKETGRRLGMGTNMYPSSALSGQDRDESIVALPVDE 240
AETIRRAL+LG+ VKMITGDQLAI KETGRRLGMGTNMYPSSAL G +D ++ ++PV+E
Sbjct: 494 AETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGTHKDANLASIPVEE 553
Query: 241 LIEKADGFAGVFPEHKYEIVKHLQARNHICGMIGNGVNDAPALKKXXXXXXXXXXXXXXX 300
LIEKADGFAGVFPEHKYEIVK LQ R HI GM G+GVNDAPALKK
Sbjct: 554 LIEKADGFAGVFPEHKYEIVKKLQERKHIVGMTGDGVNDAPALKKADIGIAVADATDAAR 613
Query: 301 XXXXXVLTEPGLNVIITAVLISRAIFQRMRNYMVRGIDGLSSTEF-----IQVLELNFLF 355
VLTEPGL+VII+AVL SRAIFQRM+NY + + F + E +F
Sbjct: 614 GASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLIALIWEFDFSA 673
Query: 356 TLDTVIAILQ--TAFTSKKD 373
+ +IAIL T T KD
Sbjct: 674 FMVLIIAILNDGTIMTISKD 693
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 365 QTAFTSKKDFGKEERELLW 383
+TAFT KKD+GKEERE W
Sbjct: 857 KTAFTMKKDYGKEEREAQW 875
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 128/346 (36%), Positives = 187/346 (54%), Gaps = 21/346 (6%)
Query: 1 MSAIVDMAGMDVLCCDKTGTLTLNKLTVDKNLIEIFAGGVDADTVVLMAARAS--QVENL 58
+SAI +AG+++LC DKTGTLT NKL++ GVD + ++L A A+ + + +
Sbjct: 363 LSAIESLAGVEILCSDKTGTLTKNKLSLHDPYT---VAGVDPEDLMLTACLAASRKKKGI 419
Query: 59 DVIDAAIVGMLADPKEARADIQE---VHFLPFDPTGKRTALTYIDSEGKMHRVTKGSPEQ 115
D ID A + L A++ + + + F PFDP K+ +G+ KG+P
Sbjct: 420 DAIDKAFLKSLKYYPRAKSVLSKYKVLQFHPFDPVSKKVVAVVESPQGERITCVKGAPLF 479
Query: 116 ILNLLHNKSKIGRKVNAV----INKFAERGLRSLAVAYQEVPEGSKESSGSPWQFIGLIP 171
+L + I +V+ + +FA RG RSL VA K GS W+ +G++P
Sbjct: 480 VLKTVEEDHPIPEEVDQAYKNKVAEFATRGFRSLGVA-------RKRGEGS-WEILGIMP 531
Query: 172 LFDPPIHDSAETIRRALSLGLGVKMITGDQLAIAKETGRRLGMGTNMYPSSALSGQDRDE 231
DPP HD+ +T+ A +LGL +KM+TGD + IA+ET R+LG+GTN+Y + L +
Sbjct: 532 CMDPPRHDTYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGLGTNIYNAERLGLGGGGD 591
Query: 232 SIVALPVDELIEKADGFAGVFPEHKYEIVKHLQARNHICGMIGNGVNDAPALKKXXXXXX 291
+ V + +E ADGFA VFP+HKY +V+ LQ R ++ M G+GVNDAP+LKK
Sbjct: 592 -MPGSEVYDFVEAADGFAEVFPQHKYNVVEILQQRGYLVAMTGDGVNDAPSLKKADTGIA 650
Query: 292 XXXXXXXXXXXXXXVLTEPGLNVIITAVLISRAIFQRMRNYMVRGI 337
V PGL II A+ SR IF RM Y+V I
Sbjct: 651 VEGSSDAARSAADIVFLAPGLGAIIDALKTSRQIFHRMYAYVVYRI 696
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 119/252 (47%), Gaps = 33/252 (13%)
Query: 110 KGSPEQILNLLHNKSKIG-----------RKVNAVINKFA--ERGLRSLAVAYQEVPEGS 156
KG+PE +++ N ++G K+ +VI ++ LR LA+A ++ P
Sbjct: 516 KGAPEGVIDRC-NYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKR 574
Query: 157 KE----------SSGSPWQFIGLIPLFDPPIHDSAETIRRALSLGLGVKMITGDQLAIAK 206
+E + F+G++ + DPP + +I+ G+ V MITGD A
Sbjct: 575 EEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAI 634
Query: 207 ETGRRLGM-GTNM-YPSSALSGQDRDESIVALPVDELIE---KADGFAGVFPEHKYEIVK 261
RR+G+ G N A +G++ D+ LP+ E E +A FA V P HK +IV+
Sbjct: 635 AICRRIGIFGENEEVADRAYTGREFDD----LPLAEQREACRRACCFARVEPSHKSKIVE 690
Query: 262 HLQARNHICGMIGNGVNDAPALKKXXXXXXXXXXXXXXXXXXXXVLTEPGLNVIITAVLI 321
+LQ+ + I M G+GVNDAPALKK VL + + I+ AV
Sbjct: 691 YLQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEE 750
Query: 322 SRAIFQRMRNYM 333
RAI+ M+ ++
Sbjct: 751 GRAIYNNMKQFI 762
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 1 MSAIVDMAGMDVLCCDKTGTLTLNKLTVDKNLI 33
+ ++ + V+C DKTGTLT N+++V K I
Sbjct: 337 LPSVETLGCTSVICSDKTGTLTTNQMSVCKMFI 369
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 119/252 (47%), Gaps = 33/252 (13%)
Query: 110 KGSPEQILNLLHNKSKIG-----------RKVNAVINKFA--ERGLRSLAVAYQEVPEGS 156
KG+PE +++ N ++G K+ +VI ++ LR LA+A ++ P
Sbjct: 515 KGAPEGVIDRC-NYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKR 573
Query: 157 KE----------SSGSPWQFIGLIPLFDPPIHDSAETIRRALSLGLGVKMITGDQLAIAK 206
+E + F+G++ + DPP + +I+ G+ V MITGD A
Sbjct: 574 EEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAI 633
Query: 207 ETGRRLGM-GTNM-YPSSALSGQDRDESIVALPVDELIE---KADGFAGVFPEHKYEIVK 261
RR+G+ G N A +G++ D+ LP+ E E +A FA V P HK +IV+
Sbjct: 634 AICRRIGIFGENEEVADRAYTGREFDD----LPLAEQREACRRACCFARVEPSHKSKIVE 689
Query: 262 HLQARNHICGMIGNGVNDAPALKKXXXXXXXXXXXXXXXXXXXXVLTEPGLNVIITAVLI 321
+LQ+ + I M G+GVNDAPALKK VL + + I+ AV
Sbjct: 690 YLQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEE 749
Query: 322 SRAIFQRMRNYM 333
RAI+ M+ ++
Sbjct: 750 GRAIYNNMKQFI 761
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 1 MSAIVDMAGMDVLCCDKTGTLTLNKLTVDKNLI 33
+ ++ + V+C DKTGTLT N+++V K I
Sbjct: 336 LPSVETLGCTSVICSDKTGTLTTNQMSVCKMFI 368
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 119/252 (47%), Gaps = 33/252 (13%)
Query: 110 KGSPEQILNLLHNKSKIG-----------RKVNAVINKFA--ERGLRSLAVAYQEVPEGS 156
KG+PE +++ N ++G K+ +VI ++ LR LA+A ++ P
Sbjct: 515 KGAPEGVIDRC-NYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKR 573
Query: 157 KE----------SSGSPWQFIGLIPLFDPPIHDSAETIRRALSLGLGVKMITGDQLAIAK 206
+E + F+G++ + DPP + +I+ G+ V MITGD A
Sbjct: 574 EEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAI 633
Query: 207 ETGRRLGM-GTNM-YPSSALSGQDRDESIVALPVDELIE---KADGFAGVFPEHKYEIVK 261
RR+G+ G N A +G++ D+ LP+ E E +A FA V P HK +IV+
Sbjct: 634 AICRRIGIFGENEEVADRAYTGREFDD----LPLAEQREACRRACCFARVEPSHKSKIVE 689
Query: 262 HLQARNHICGMIGNGVNDAPALKKXXXXXXXXXXXXXXXXXXXXVLTEPGLNVIITAVLI 321
+LQ+ + I M G+GVNDAPALKK VL + + I+ AV
Sbjct: 690 YLQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEE 749
Query: 322 SRAIFQRMRNYM 333
RAI+ M+ ++
Sbjct: 750 GRAIYNNMKQFI 761
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 119/252 (47%), Gaps = 33/252 (13%)
Query: 110 KGSPEQILNLLHNKSKIG-----------RKVNAVINKFA--ERGLRSLAVAYQEVPEGS 156
KG+PE +++ N ++G K+ +VI ++ LR LA+A ++ P
Sbjct: 514 KGAPEGVIDRC-NYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKR 572
Query: 157 KE----------SSGSPWQFIGLIPLFDPPIHDSAETIRRALSLGLGVKMITGDQLAIAK 206
+E + F+G++ + DPP + +I+ G+ V MITGD A
Sbjct: 573 EEMVLDDSTKFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAI 632
Query: 207 ETGRRLGM-GTNM-YPSSALSGQDRDESIVALPVDELIE---KADGFAGVFPEHKYEIVK 261
RR+G+ G N A +G++ D+ LP+ E E +A FA V P HK +IV+
Sbjct: 633 AICRRIGIFGENEDVADRAYTGREFDD----LPLAEQREACRRACCFARVEPTHKSKIVE 688
Query: 262 HLQARNHICGMIGNGVNDAPALKKXXXXXXXXXXXXXXXXXXXXVLTEPGLNVIITAVLI 321
+LQ+ + I M G+GVNDAPALKK VL + + I+ AV
Sbjct: 689 YLQSFDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEE 748
Query: 322 SRAIFQRMRNYM 333
RAI+ M+ ++
Sbjct: 749 GRAIYNNMKQFI 760
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 1 MSAIVDMAGMDVLCCDKTGTLTLNKLTVDKNLI 33
+ ++ + V+C DKTGTLT N+++V K I
Sbjct: 336 LPSVETLGCTSVICSDKTGTLTTNQMSVCKMFI 368
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 90/367 (24%), Positives = 153/367 (41%), Gaps = 82/367 (22%)
Query: 1 MSAIVDMAGMDVLCCDKTGTLTLNKLTV-----DKNLIEIFA----GGVDADT------- 44
+ A+ + +C DKTGTLT N++TV D + E GV D
Sbjct: 336 LEAVETLGSTSTICSDKTGTLTQNRMTVAHMWSDNQIHEADTTENQSGVSFDKTSATWLA 395
Query: 45 ---VVLMAARA---SQVENLDVIDAAIVG-------------MLADPKEARADIQEVHFL 85
+ + RA + ENL ++ A+ G KE R ++ +
Sbjct: 396 LSRIAGLCNRAVFQANQENLPILKRAVAGDASESALLKCIELCCGSVKEMRERYTKIVEI 455
Query: 86 PFDPTGKRTALTYID---SEGKMHRVTKGSPEQILN-----LLHNKSK-IGRKV-NAVIN 135
PF+ T K + + +E + V KG+PE+IL+ L+H K + + ++ +A N
Sbjct: 456 PFNSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSILIHGKEQPLDEELKDAFQN 515
Query: 136 KFAERG--------LRSLAVAYQEVPEGSK---ESSGSPWQ---FIGLIPLFDPPIHDSA 181
+ E G L + ++ PEG + + P F+GLI + DPP
Sbjct: 516 AYLELGGLGERVLGFCHLFLPDEQFPEGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVP 575
Query: 182 ETIRRALSLGLGVKMITGDQLAIAKETGRRLGMGTN------------MYPSSALSGQDR 229
+ + + S G+ V M+TGD AK + +G+ + P S ++ +D
Sbjct: 576 DAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDA 635
Query: 230 DESIV---------ALPVDELIEKADG--FAGVFPEHKYEIVKHLQARNHICGMIGNGVN 278
+V + +D++++ FA P+ K IV+ Q + I + G+GVN
Sbjct: 636 KACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVN 695
Query: 279 DAPALKK 285
D+PA KK
Sbjct: 696 DSPASKK 702
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 89/367 (24%), Positives = 152/367 (41%), Gaps = 82/367 (22%)
Query: 1 MSAIVDMAGMDVLCCDKTGTLTLNKLTV-----DKNLIEIFA----GGVDADT------- 44
+ A+ + +C KTGTLT N++TV D + E GV D
Sbjct: 330 LEAVETLGSTSTICSXKTGTLTQNRMTVAHMWSDNQIHEADTTENQSGVSFDKTSATWLA 389
Query: 45 ---VVLMAARA---SQVENLDVIDAAIVG-------------MLADPKEARADIQEVHFL 85
+ + RA + ENL ++ A+ G KE R ++ +
Sbjct: 390 LSRIAGLCNRAVFQANQENLPILKRAVAGDASESALLKCIELCCGSVKEMRERYTKIVEI 449
Query: 86 PFDPTGKRTALTYID---SEGKMHRVTKGSPEQILN-----LLHNKSK-IGRKV-NAVIN 135
PF+ T K + + +E + V KG+PE+IL+ L+H K + + ++ +A N
Sbjct: 450 PFNSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSILIHGKEQPLDEELKDAFQN 509
Query: 136 KFAERG--------LRSLAVAYQEVPEGSK---ESSGSPWQ---FIGLIPLFDPPIHDSA 181
+ E G L + ++ PEG + + P F+GLI + DPP
Sbjct: 510 AYLELGGLGERVLGFCHLFLPDEQFPEGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVP 569
Query: 182 ETIRRALSLGLGVKMITGDQLAIAKETGRRLGMGTN------------MYPSSALSGQDR 229
+ + + S G+ V M+TGD AK + +G+ + P S ++ +D
Sbjct: 570 DAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDA 629
Query: 230 DESIV---------ALPVDELIEKADG--FAGVFPEHKYEIVKHLQARNHICGMIGNGVN 278
+V + +D++++ FA P+ K IV+ Q + I + G+GVN
Sbjct: 630 KACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVN 689
Query: 279 DAPALKK 285
D+PA KK
Sbjct: 690 DSPASKK 696
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 90/372 (24%), Positives = 149/372 (40%), Gaps = 92/372 (24%)
Query: 1 MSAIVDMAGMDVLCCDKTGTLTLNKLTV-----DKNLIE--------------------- 34
+ A+ + +C DKTGTLT N++TV D + E
Sbjct: 366 LEAVETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQIHEADTTENQSGAAFDKTSATWSA 425
Query: 35 -----------IFAGGVDADTVVL--MAARASQVENLDVIDAAIVGMLADPKEARADIQE 81
+F G D ++ +A AS+ L I+ G + ++ I E
Sbjct: 426 LSRIAALCNRAVFQAGQDNVPILKRSVAGDASESALLKCIELC-CGSVQGMRDRNPKIVE 484
Query: 82 VHFLPFDPTGKRTALTYID---SEGKMHRVTKGSPEQILN----LLHNKSKIGRKVN--- 131
+ PF+ T K + + SE + V KG+PE+IL+ +L N ++ K +
Sbjct: 485 I---PFNSTNKYQLSIHENEKSSESRYLLVMKGAPERILDRCSTILLNGAEEPLKEDMKE 541
Query: 132 AVINKFAERG---LRSLAVAYQEVPEGSKESSGSPWQ------------FIGLIPLFDPP 176
A N + E G R L + +PE K + G P+ F+GL+ + DPP
Sbjct: 542 AFQNAYLELGGLGERVLGFCHFALPE-DKYNEGYPFDADEPNFPTTDLCFVGLMAMIDPP 600
Query: 177 IHDSAETIRRALSLGLGVKMITGDQLAIAKETGRRLGMGTN------------MYPSSAL 224
+ + + S G+ V M+TGD AK + +G+ + P +
Sbjct: 601 RAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETIEDIAARLNIPIGQV 660
Query: 225 SGQDRDESIV---------ALPVDELIEKADG--FAGVFPEHKYEIVKHLQARNHICGMI 273
+ +D +V +D+++ FA P+ K IV+ Q + I +
Sbjct: 661 NPRDAKACVVHGSDLKDLSTEVLDDILHYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVT 720
Query: 274 GNGVNDAPALKK 285
G+GVND+PALKK
Sbjct: 721 GDGVNDSPALKK 732
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 87/375 (23%), Positives = 136/375 (36%), Gaps = 98/375 (26%)
Query: 1 MSAIVDMAGMDVLCCDKTGTLTLNKLTVDKNLIEIFAGGVDADT---------------- 44
+ A+ + V+C DKTGTLT N++TV + D
Sbjct: 371 LEAVETLGSTSVICSDKTGTLTQNRMTVSHLWFDNHIHSADTTEDQSGQTFDQSSETWRA 430
Query: 45 ---VVLMAARASQVENLDVIDAAIVGMLADPKEA----------------RADIQEVHFL 85
V+ + RA+ D + ++ D E R +V +
Sbjct: 431 LCRVLTLCNRAAFKSGQDAVPVPKRIVIGDASETALLKFSELTLGNAMGYRERFPKVCEI 490
Query: 86 PFDPTGK--RTALTYIDSEGKMH-RVTKGSPEQILNLLHNKSKIGRKV------------ 130
PF+ T K + T D H V KG+PE++L + G+++
Sbjct: 491 PFNSTNKFQLSIHTLEDPRDPRHVLVMKGAPERVLERCSSILIKGQELPLDEQWREAFQT 550
Query: 131 -NAVINKFAER--GLRSLAVAYQEVPEGSK---ESSGSP---WQFIGLIPLFDPPIHDSA 181
+ ER G L ++ ++ P G E+ P F GL+ + DPP
Sbjct: 551 AYLSLGGLGERVLGFCQLYLSEKDYPPGYAFDVEAMNFPTSGLSFAGLVSMIDPPRATVP 610
Query: 182 ETIRRALSLGLGVKMITGDQLAIAKETGRRLGMGTNMYPSSALSGQDRDESIVA---LPV 238
+ + + + G+ V M+TGD AK +G+ + G + E I A +PV
Sbjct: 611 DAVLKCRTAGIRVIMVTGDHPITAKAIAASVGIISE--------GSETVEDIAARLRVPV 662
Query: 239 D-----------------------ELIEKADG-----FAGVFPEHKYEIVKHLQARNHIC 270
D EL+E FA P+ K IV+ Q I
Sbjct: 663 DQVNRKDARACVINGMQLKDMDPSELVEALRTHPEMVFARTSPQQKLVIVESCQRLGAIV 722
Query: 271 GMIGNGVNDAPALKK 285
+ G+GVND+PALKK
Sbjct: 723 AVTGDGVNDSPALKK 737
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 62/149 (41%), Gaps = 39/149 (26%)
Query: 142 LRSLAVAYQEVPEGSKESSGSPWQFI-------GLIPLFDPPIHDSAETIRRALSLGLGV 194
+R L + E E K+ G FI G+I L D +S E I + ++G+
Sbjct: 105 IRELGIKTDESVEKLKQQ-GKTVVFILKNGEVSGVIALADRIRPESREAISKLKAIGIKC 163
Query: 195 KMITGDQLAIAKETGRRLGMGTNMYPSSALSGQDRDESIVALPVDELIEKADGFAGVFPE 254
M+TGD +AK LG+ D FA V P
Sbjct: 164 MMLTGDNRFVAKWVAEELGLD------------------------------DYFAEVLPH 193
Query: 255 HKYEIVKHLQARNHICGMIGNGVNDAPAL 283
K E VK +Q + ++ M+G+GVNDAPAL
Sbjct: 194 EKAEKVKEVQ-QKYVTAMVGDGVNDAPAL 221
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 51/116 (43%), Gaps = 31/116 (26%)
Query: 168 GLIPLFDPPIHDSAETIRRALSLGLGVKMITGDQLAIAKETGRRLGMGTNMYPSSALSGQ 227
G+I L D +S E I + ++G+ M+TGD +AK LG+
Sbjct: 137 GVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLD------------ 184
Query: 228 DRDESIVALPVDELIEKADGFAGVFPEHKYEIVKHLQARNHICGMIGNGVNDAPAL 283
D FA V P K E VK +Q + ++ M+G+GVNDAPAL
Sbjct: 185 ------------------DYFAEVLPHEKAEKVKEVQ-QKYVTAMVGDGVNDAPAL 221
>pdb|2O98|P Chain P, Structure Of The 14-3-3 H+-Atpase Plant Complex
pdb|2O98|Q Chain Q, Structure Of The 14-3-3 H+-Atpase Plant Complex
Length = 52
Score = 48.5 bits (114), Expect = 8e-06, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 405 SSYGELSWMXXXXXXXXXXXXXXXXHTLKGHVESLIRLKGLDIDAIQQSYSV 456
+++ EL+ + HTLKGHVES+++LKGLDI+ IQQSY +
Sbjct: 1 TNFNELNQLAEEAKRRAEIARQRELHTLKGHVESVVKLKGLDIETIQQSYDI 52
>pdb|3M50|P Chain P, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY
EPIBESTAT
pdb|3M51|P Chain P, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY
PYRROLIDO
pdb|4DX0|P Chain P, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY A
PYRAZOLE Derivative
Length = 31
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 25/27 (92%)
Query: 430 HTLKGHVESLIRLKGLDIDAIQQSYSV 456
HTLKGHVE++++LKGLDI+ IQQSY +
Sbjct: 5 HTLKGHVEAVVKLKGLDIETIQQSYDI 31
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 31/163 (19%)
Query: 168 GLIPLFDPPIHDSAETIRRALSLGLGVKMITGDQLAIAKETGRRLGMGTNMYPSSALSGQ 227
G+I + D + ++ +G+ V MITGD A+ R L +
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL------------- 202
Query: 228 DRDESIVALPVDELIEKADGFAGVFPEHKYEIVKHLQARNHICGMIGNGVNDAPALKKXX 287
+L+ A V P K E VK LQA+ + +G+G+NDAPAL +
Sbjct: 203 ------------DLV-----IAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQAD 244
Query: 288 XXXXXXXXXXXXXXXXXXVLTEPGLNVIITAVLISRAIFQRMR 330
VL L ++ A+ +SR +++
Sbjct: 245 LGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 31/163 (19%)
Query: 168 GLIPLFDPPIHDSAETIRRALSLGLGVKMITGDQLAIAKETGRRLGMGTNMYPSSALSGQ 227
G+I + D + ++ +G+ V MITGD A+ R L +
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL------------- 202
Query: 228 DRDESIVALPVDELIEKADGFAGVFPEHKYEIVKHLQARNHICGMIGNGVNDAPALKKXX 287
+L+ A V P K E VK LQA+ + +G+G+NDAPAL +
Sbjct: 203 ------------DLV-----IAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQAD 244
Query: 288 XXXXXXXXXXXXXXXXXXVLTEPGLNVIITAVLISRAIFQRMR 330
VL L ++ A+ +SR +++
Sbjct: 245 LGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 62/164 (37%), Gaps = 31/164 (18%)
Query: 168 GLIPLFDPPIHDSAETIRRALSLGLGVKMITGDQLAIAKETGRRLGMGTNMYPSSALSGQ 227
G+I + D + ++ +G+ V MITGD A+ R L +
Sbjct: 528 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL------------- 574
Query: 228 DRDESIVALPVDELIEKADGFAGVFPEHKYEIVKHLQARNHICGMIGNGVNDAPALKKXX 287
D +I A V P K E VK LQA+ + +G+G+NDAPAL +
Sbjct: 575 -----------DLVI------AEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQAD 616
Query: 288 XXXXXXXXXXXXXXXXXXVLTEPGLNVIITAVLISRAIFQRMRN 331
VL L ++ A+ +SR +++
Sbjct: 617 LGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQ 660
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 48/119 (40%), Gaps = 30/119 (25%)
Query: 167 IGLIPLFDPPIHDSAETIRRALSLGLGVKMITGDQLAIAKETGRRLGMGTNMYPSSALSG 226
+ L+ + DP + ETI G+ + M+TGD A+ LG
Sbjct: 546 VALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLG------------- 592
Query: 227 QDRDESIVALPVDELIEKADGFAGVFPEHKYEIVKHLQARNHICGMIGNGVNDAPALKK 285
I+K A + PE K IV L+ + I M G+GVNDAPAL K
Sbjct: 593 ---------------IKKV--VAEIMPEDKSRIVSELKDKGLIVAMAGDGVNDAPALAK 634
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 62/164 (37%), Gaps = 31/164 (18%)
Query: 168 GLIPLFDPPIHDSAETIRRALSLGLGVKMITGDQLAIAKETGRRLGMGTNMYPSSALSGQ 227
G+I + D + ++ +G+ V MITGD A+ R L +
Sbjct: 450 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL------------- 496
Query: 228 DRDESIVALPVDELIEKADGFAGVFPEHKYEIVKHLQARNHICGMIGNGVNDAPALKKXX 287
D +I A V P K E VK LQA+ + +G+G+NDAPAL +
Sbjct: 497 -----------DLVI------AEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQAD 538
Query: 288 XXXXXXXXXXXXXXXXXXVLTEPGLNVIITAVLISRAIFQRMRN 331
VL L ++ A+ +SR +++
Sbjct: 539 LGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQ 582
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 248 FAGVFPEHKYEIVKHLQARNHICGMIGNGVNDAPALKKXXXXXXXXXXXXXXXXXXXXVL 307
A V P K E VK LQA+ + +G+G+NDAPAL + VL
Sbjct: 186 IAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQADLGIAVGSGSDVAVESGDIVL 244
Query: 308 TEPGLNVIITAVLISR 323
L ++ A+ +SR
Sbjct: 245 IRDDLRDVVAAIQLSR 260
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 248 FAGVFPEHKYEIVKHLQARNHICGMIGNGVNDAPAL 283
A V P K E VK LQA+ + +G+G+NDAPAL
Sbjct: 65 IAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPAL 99
>pdb|3GWI|A Chain A, Crystal Structure Of Mg-Atpase Nucleotide Binding Domain
Length = 170
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Query: 80 QEVHFLPFDPTGKRTALTYIDSEGKMHRVTKGSPEQILNLL----HNKSKIG------RK 129
Q++ +PFD +R ++ ++ V KG+ ++ILN+ HN + RK
Sbjct: 57 QKIDEIPFDFERRRMSVVVAENTEHHQLVCKGALQEILNVCSQVRHNGEIVPLDDIMLRK 116
Query: 130 VNAVINKFAERGLRSLAVAYQEVP 153
+ V + +GLR +AVA + +P
Sbjct: 117 IKRVTDTLNRQGLRVVAVATKYLP 140
>pdb|1XAG|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAH|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+
And Nad+
pdb|1XAH|B Chain B, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+
And Nad+
pdb|1XAI|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAI|B Chain B, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAJ|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAJ|B Chain B, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAL|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-dehydroquinate Synthase (dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate (soak)
pdb|1XAL|B Chain B, Crystal Structure Of Staphlyococcus Aureus
3-dehydroquinate Synthase (dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate (soak)
Length = 354
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Query: 126 IGRKVNAVINKFAERGLRSL---------AV-AYQEVPEGSKESSGSPWQFIGLIPLFDP 175
I K++ V+ E+G+R AV Y ++P G G +QFI LFD
Sbjct: 218 IETKLDIVVADEKEQGVRKFLNLGHTFGHAVEYYHKIPHGHAVMVGIIYQFIVANALFDS 277
Query: 176 PIHDSAETIRRALSLGLGVKMIT 198
HD + I+ + LG + MIT
Sbjct: 278 K-HDISHYIQYLIQLGYPLDMIT 299
>pdb|1MO7|A Chain A, Atpase
pdb|1MO8|A Chain A, Atpase
Length = 213
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 69/153 (45%), Gaps = 28/153 (18%)
Query: 48 MAARASQVENLDVIDAAIVGMLADPKEARADIQEVHFLPFDPTGKRTALTYID---SEGK 104
+A AS+ L I+ G + + +E I E+ PF+ T K + + SE K
Sbjct: 65 VAGDASESALLKCIEVC-CGSVMEMREKYTKIVEI---PFNSTNKYQLSIHKNPNASEPK 120
Query: 105 MHRVTKGSPEQILN-----LLHNKSK-IGRKV-NAVINKFAERG--------LRSLAVAY 149
V KG+PE+IL+ LLH K + + ++ +A N + E G L +
Sbjct: 121 HLLVMKGAPERILDRCSSILLHGKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLLLPD 180
Query: 150 QEVPEGSK---ESSGSPWQ---FIGLIPLFDPP 176
++ PEG + + P F+GLI + DPP
Sbjct: 181 EQFPEGFQFDTDEVNFPVDNLCFVGLISMIDPP 213
>pdb|1EY3|A Chain A, Structure Of Enoyl-Coa Hydratase Complexed With The
Substrate Dac-Coa
pdb|1EY3|B Chain B, Structure Of Enoyl-Coa Hydratase Complexed With The
Substrate Dac-Coa
pdb|1EY3|C Chain C, Structure Of Enoyl-Coa Hydratase Complexed With The
Substrate Dac-Coa
pdb|1EY3|D Chain D, Structure Of Enoyl-Coa Hydratase Complexed With The
Substrate Dac-Coa
pdb|1EY3|E Chain E, Structure Of Enoyl-Coa Hydratase Complexed With The
Substrate Dac-Coa
pdb|1EY3|F Chain F, Structure Of Enoyl-Coa Hydratase Complexed With The
Substrate Dac-Coa
Length = 258
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 124 SKIGRKVNAVINKFAERGLRSLAVAYQEVPEGSKESSGSPWQFIGLIPLFDPPIHDSAET 183
++I + V A +N +A G LA+ + G K G P +G IP +
Sbjct: 92 TRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPG-----AGGTQR 146
Query: 184 IRRALSLGLGVKMI-TGDQLAIAKETGRRLGMGTNMYPSSAL 224
+ RA+ L ++M+ TGD+ I+ + ++ G+ + ++P L
Sbjct: 147 LTRAVGKSLAMEMVLTGDR--ISAQDAKQAGLVSKIFPVETL 186
>pdb|1DUB|A Chain A, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5
pdb|1DUB|B Chain B, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5
pdb|1DUB|C Chain C, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5
pdb|1DUB|D Chain D, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5
pdb|1DUB|E Chain E, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5
pdb|1DUB|F Chain F, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5
pdb|2DUB|A Chain A, Enoyl-Coa Hydratase Complexed With Octanoyl-Coa
pdb|2DUB|B Chain B, Enoyl-Coa Hydratase Complexed With Octanoyl-Coa
pdb|2DUB|C Chain C, Enoyl-Coa Hydratase Complexed With Octanoyl-Coa
pdb|2DUB|D Chain D, Enoyl-Coa Hydratase Complexed With Octanoyl-Coa
pdb|2DUB|E Chain E, Enoyl-Coa Hydratase Complexed With Octanoyl-Coa
pdb|2DUB|F Chain F, Enoyl-Coa Hydratase Complexed With Octanoyl-Coa
Length = 261
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 124 SKIGRKVNAVINKFAERGLRSLAVAYQEVPEGSKESSGSPWQFIGLIPLFDPPIHDSAET 183
++I + V A +N +A G LA+ + G K G P +G IP +
Sbjct: 95 TRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPG-----AGGTQR 149
Query: 184 IRRALSLGLGVKMI-TGDQLAIAKETGRRLGMGTNMYPSSAL 224
+ RA+ L ++M+ TGD+ I+ + ++ G+ + ++P L
Sbjct: 150 LTRAVGKSLAMEMVLTGDR--ISAQDAKQAGLVSKIFPVETL 189
>pdb|1MJ3|A Chain A, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In
Complex With Hexadienoyl-Coa
pdb|1MJ3|B Chain B, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In
Complex With Hexadienoyl-Coa
pdb|1MJ3|C Chain C, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In
Complex With Hexadienoyl-Coa
pdb|1MJ3|D Chain D, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In
Complex With Hexadienoyl-Coa
pdb|1MJ3|E Chain E, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In
Complex With Hexadienoyl-Coa
pdb|1MJ3|F Chain F, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In
Complex With Hexadienoyl-Coa
Length = 260
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 124 SKIGRKVNAVINKFAERGLRSLAVAYQEVPEGSKESSGSPWQFIGLIPLFDPPIHDSAET 183
++I + V A +N +A G LA+ + G K G P +G IP +
Sbjct: 94 TRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPG-----AGGTQR 148
Query: 184 IRRALSLGLGVKMI-TGDQLAIAKETGRRLGMGTNMYPSSAL 224
+ RA+ L ++M+ TGD+ I+ + ++ G+ + ++P L
Sbjct: 149 LTRAVGKSLAMEMVLTGDR--ISAQDAKQAGLVSKIFPVETL 188
>pdb|3GDE|A Chain A, The Closed Conformation Of Atp-Dependent Dna Ligase From
Archaeoglobus Fulgidus
Length = 558
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 124 SKIGRKVNAVINKFAERGLRSLAVAYQEVPEGSKESSGSPWQFIGLIPLFDPPIHDSAET 183
S+ G+KV I K+ VAYQE+ + K SG +F + L D D A+T
Sbjct: 489 SQQGKKVE-FIPKYV------FEVAYQEIQKSPKYESGYALRFPRFVRLRDDKDVDEADT 541
Query: 184 IRRALSL 190
I R +L
Sbjct: 542 IERVENL 548
>pdb|3ZBD|A Chain A, Structure Of Tgev Nsp1
pdb|3ZBD|B Chain B, Structure Of Tgev Nsp1
Length = 113
Score = 30.0 bits (66), Expect = 2.7, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 224 LSGQDRDESIVALPVDELIEKA-----DGFAG-VF-PEHKYEIVKHLQARNHICGMIGNG 276
L +D ++ +LP+ +++++ +GF G VF PE+ ++V + +++ G++GNG
Sbjct: 17 LVNEDYQVNVPSLPIRDVLQEIKYCYRNGFEGYVFVPEYCRDLVDCDRKDHYVIGVLGNG 76
Query: 277 VND 279
V+D
Sbjct: 77 VSD 79
>pdb|1BXC|A Chain A, Xylose Isomerase From Thermus Caldophilus
pdb|1BXC|B Chain B, Xylose Isomerase From Thermus Caldophilus
pdb|1BXC|C Chain C, Xylose Isomerase From Thermus Caldophilus
pdb|1BXC|D Chain D, Xylose Isomerase From Thermus Caldophilus
Length = 387
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 142 LRSLAVAYQEVPEGSKESSGSPWQFIGLIPLFDPPIHDSAETIRRALSLGLGVKMITG-- 199
L+ A A++E PE + + + +PL DP H+ AE ++RA L L K G
Sbjct: 312 LKERAEAFREDPEVKELLAAYYQEDPAALPLMDPYSHEKAEALKRA-ELPLEAKRHRGYA 370
Query: 200 ----DQLAIAKETGRR 211
DQLA+ G R
Sbjct: 371 LERLDQLAVEYLLGVR 386
>pdb|1WR8|A Chain A, Crystal Structure Of Hypothetical Protein Ph1421 From
Pyrococcus Horikoshii.
pdb|1WR8|B Chain B, Crystal Structure Of Hypothetical Protein Ph1421 From
Pyrococcus Horikoshii
Length = 231
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 168 GLIPLFDPPIHDSA-ETIRRALSLGLGVKMITGDQLAIAK 206
G I + IH+ A E IRRA SLG+ + ++TG+ + A+
Sbjct: 12 GTITYPNRMIHEKALEAIRRAESLGIPIMLVTGNTVQFAE 51
>pdb|1E19|A Chain A, Structure Of The Carbamate Kinase-Like Carbamoyl Phosphate
Synthetase From The Hyperthermophilic Archaeon
Pyrococcus Furiosus Bound To Adp
pdb|1E19|B Chain B, Structure Of The Carbamate Kinase-Like Carbamoyl Phosphate
Synthetase From The Hyperthermophilic Archaeon
Pyrococcus Furiosus Bound To Adp
Length = 314
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 157 KESSGSPWQFIGLIPLFDPPIHDSAETIRRALSLGL 192
KE SG W+ + +P DP H AETI++ + G+
Sbjct: 154 KEDSGRGWRRV--VPSPDPKGHVEAETIKKLVERGV 187
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,652,343
Number of Sequences: 62578
Number of extensions: 449124
Number of successful extensions: 1642
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1585
Number of HSP's gapped (non-prelim): 56
length of query: 456
length of database: 14,973,337
effective HSP length: 102
effective length of query: 354
effective length of database: 8,590,381
effective search space: 3040994874
effective search space used: 3040994874
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)