Query 012768
Match_columns 456
No_of_seqs 260 out of 1817
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 06:06:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012768.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012768hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2016 NEDD8-activating compl 100.0 1E-103 3E-108 764.5 36.7 450 2-454 10-499 (523)
2 cd01493 APPBP1_RUB Ubiquitin a 100.0 4.2E-87 9.2E-92 679.5 36.6 339 2-340 3-381 (425)
3 KOG2012 Ubiquitin activating e 100.0 1E-60 2.3E-65 493.4 14.7 357 1-454 19-376 (1013)
4 TIGR01408 Ube1 ubiquitin-activ 100.0 9.5E-57 2.1E-61 496.8 20.6 354 1-454 6-366 (1008)
5 KOG2014 SMT3/SUMO-activating c 100.0 1.5E-50 3.2E-55 378.6 16.4 291 1-454 13-304 (331)
6 cd01491 Ube1_repeat1 Ubiquitin 100.0 1.4E-48 3.1E-53 377.4 12.9 156 1-162 1-156 (286)
7 cd01492 Aos1_SUMO Ubiquitin ac 100.0 1.1E-38 2.4E-43 295.4 14.9 152 1-155 3-154 (197)
8 cd01485 E1-1_like Ubiquitin ac 100.0 2.2E-38 4.7E-43 293.8 15.3 155 1-155 1-157 (198)
9 TIGR02356 adenyl_thiF thiazole 100.0 3.9E-36 8.4E-41 279.9 17.7 195 2-214 2-199 (202)
10 PRK05690 molybdopterin biosynt 100.0 1.4E-35 3E-40 283.8 16.9 198 2-217 13-213 (245)
11 PRK08223 hypothetical protein; 100.0 3.5E-35 7.6E-40 282.5 18.7 153 2-157 10-165 (287)
12 cd00757 ThiF_MoeB_HesA_family 100.0 1.5E-34 3.3E-39 274.5 17.8 154 2-157 2-157 (228)
13 PRK07411 hypothetical protein; 100.0 1.6E-34 3.4E-39 294.0 18.5 200 2-218 19-221 (390)
14 TIGR02355 moeB molybdopterin s 100.0 2.3E-34 5E-39 274.2 18.4 199 1-217 4-205 (240)
15 PRK05597 molybdopterin biosynt 100.0 1.1E-34 2.5E-39 291.8 16.7 200 2-218 9-211 (355)
16 PRK08328 hypothetical protein; 100.0 2.6E-34 5.7E-39 272.8 17.7 193 2-216 10-204 (231)
17 TIGR01408 Ube1 ubiquitin-activ 100.0 9.8E-33 2.1E-37 306.1 30.4 182 2-187 402-591 (1008)
18 PRK07878 molybdopterin biosynt 100.0 7.5E-34 1.6E-38 289.7 18.8 203 1-218 22-229 (392)
19 PRK05600 thiamine biosynthesis 100.0 1.4E-33 3E-38 284.4 17.6 203 2-218 22-227 (370)
20 PRK12475 thiamine/molybdopteri 100.0 2.4E-32 5.2E-37 272.6 18.1 198 2-217 5-206 (338)
21 PRK07688 thiamine/molybdopteri 100.0 2.8E-32 6.1E-37 272.1 17.1 197 2-217 5-206 (339)
22 cd01489 Uba2_SUMO Ubiquitin ac 100.0 3.3E-30 7.1E-35 252.5 26.6 138 21-159 1-138 (312)
23 cd01490 Ube1_repeat2 Ubiquitin 100.0 1.7E-29 3.6E-34 256.4 30.1 138 21-158 1-145 (435)
24 cd01484 E1-2_like Ubiquitin ac 100.0 5.4E-31 1.2E-35 248.9 15.9 161 21-181 1-164 (234)
25 PRK08762 molybdopterin biosynt 100.0 1.1E-30 2.5E-35 265.5 18.2 202 2-218 116-322 (376)
26 COG0476 ThiF Dinucleotide-util 100.0 3.8E-30 8.1E-35 248.5 18.9 202 1-217 10-214 (254)
27 cd01488 Uba3_RUB Ubiquitin act 100.0 4.1E-30 8.8E-35 249.2 15.9 158 21-181 1-171 (291)
28 PRK14852 hypothetical protein; 100.0 2.8E-30 6.1E-35 280.1 15.8 156 2-160 315-473 (989)
29 PRK15116 sulfur acceptor prote 100.0 3.9E-30 8.5E-35 246.8 12.9 140 2-144 13-154 (268)
30 PRK14851 hypothetical protein; 100.0 6.6E-30 1.4E-34 273.9 14.2 155 2-159 26-183 (679)
31 KOG2017 Molybdopterin synthase 100.0 4.6E-30 1E-34 244.5 9.9 197 2-216 47-247 (427)
32 PF00899 ThiF: ThiF family; I 100.0 7.6E-29 1.7E-33 216.5 13.8 134 18-153 1-134 (135)
33 PTZ00245 ubiquitin activating 100.0 7.3E-29 1.6E-33 229.8 11.5 115 1-124 8-122 (287)
34 PRK08644 thiamine biosynthesis 100.0 3.2E-28 7E-33 227.9 15.9 149 2-154 11-161 (212)
35 cd00755 YgdL_like Family of ac 100.0 4.3E-28 9.2E-33 229.0 14.1 135 9-146 1-137 (231)
36 cd01483 E1_enzyme_family Super 100.0 6.4E-28 1.4E-32 212.7 14.1 133 21-155 1-133 (143)
37 KOG2013 SMT3/SUMO-activating c 99.9 1.2E-27 2.5E-32 236.3 7.8 155 12-167 5-160 (603)
38 PRK07877 hypothetical protein; 99.9 2.2E-26 4.8E-31 247.3 13.6 144 2-152 90-235 (722)
39 COG1179 Dinucleotide-utilizing 99.9 2.2E-26 4.9E-31 211.3 10.6 142 2-146 13-156 (263)
40 KOG2015 NEDD8-activating compl 99.9 1.4E-25 2.9E-30 212.0 13.0 146 10-158 31-186 (422)
41 cd01486 Apg7 Apg7 is an E1-lik 99.9 3E-25 6.5E-30 213.6 13.1 136 21-157 1-153 (307)
42 TIGR01381 E1_like_apg7 E1-like 99.9 9.8E-25 2.1E-29 227.6 17.6 149 8-157 327-493 (664)
43 cd01487 E1_ThiF_like E1_ThiF_l 99.9 1.3E-24 2.8E-29 197.6 13.0 131 21-155 1-133 (174)
44 TIGR03603 cyclo_dehy_ocin bact 99.9 2E-24 4.2E-29 213.6 13.8 139 2-157 55-199 (318)
45 KOG2012 Ubiquitin activating e 99.9 1.1E-23 2.4E-28 219.4 17.2 158 2-159 413-577 (1013)
46 TIGR02354 thiF_fam2 thiamine b 99.9 5.4E-24 1.2E-28 197.4 12.8 142 7-153 9-152 (200)
47 PRK06153 hypothetical protein; 99.9 2.2E-22 4.8E-27 199.6 12.9 128 12-144 169-299 (393)
48 TIGR03736 PRTRC_ThiF PRTRC sys 99.9 4.7E-21 1E-25 181.5 12.6 132 17-155 9-153 (244)
49 KOG2018 Predicted dinucleotide 99.8 7.1E-20 1.5E-24 172.8 9.1 139 3-144 58-198 (430)
50 KOG2336 Molybdopterin biosynth 99.7 1.5E-16 3.3E-21 148.2 11.4 157 2-159 62-233 (422)
51 KOG2337 Ubiquitin activating E 99.5 7E-14 1.5E-18 140.2 7.7 145 12-157 333-495 (669)
52 TIGR03693 ocin_ThiF_like putat 99.2 2.3E-11 5E-16 126.8 9.6 127 10-153 120-251 (637)
53 COG4015 Predicted dinucleotide 98.7 9.2E-08 2E-12 83.1 9.0 123 19-150 18-146 (217)
54 PRK06718 precorrin-2 dehydroge 97.7 0.00042 9E-09 64.6 11.3 94 16-142 7-100 (202)
55 PF01488 Shikimate_DH: Shikima 97.6 0.00014 3E-09 63.3 6.0 77 16-121 9-85 (135)
56 PRK12549 shikimate 5-dehydroge 97.6 0.00024 5.2E-09 69.8 8.3 76 17-119 125-200 (284)
57 COG1748 LYS9 Saccharopine dehy 97.5 0.00029 6.4E-09 71.4 8.4 99 20-145 2-101 (389)
58 TIGR01470 cysG_Nterm siroheme 97.5 0.00084 1.8E-08 62.7 10.8 101 17-149 7-107 (205)
59 PRK06719 precorrin-2 dehydroge 97.2 0.0048 1E-07 55.1 11.3 89 16-140 10-98 (157)
60 PF13241 NAD_binding_7: Putati 97.1 0.0017 3.7E-08 53.6 7.4 88 16-142 4-91 (103)
61 PRK05562 precorrin-2 dehydroge 97.0 0.0077 1.7E-07 56.7 11.5 96 16-145 22-119 (223)
62 COG0569 TrkA K+ transport syst 96.6 0.019 4E-07 54.5 10.5 98 20-144 1-100 (225)
63 COG0373 HemA Glutamyl-tRNA red 96.4 0.0043 9.4E-08 63.4 5.5 74 16-121 175-248 (414)
64 TIGR01809 Shik-DH-AROM shikima 96.4 0.0076 1.7E-07 59.1 6.9 77 17-120 123-199 (282)
65 PRK12548 shikimate 5-dehydroge 96.4 0.013 2.8E-07 57.7 8.3 84 17-119 124-207 (289)
66 PRK04148 hypothetical protein; 96.4 0.02 4.2E-07 49.5 8.3 94 18-143 16-109 (134)
67 TIGR03882 cyclo_dehyd_2 bacter 96.3 0.023 5E-07 52.5 9.2 85 10-154 96-181 (193)
68 PRK14027 quinate/shikimate deh 96.3 0.011 2.5E-07 57.9 7.1 78 17-119 125-202 (283)
69 PF03435 Saccharop_dh: Sacchar 96.2 0.0098 2.1E-07 61.0 6.8 95 22-141 1-96 (386)
70 COG0169 AroE Shikimate 5-dehyd 96.2 0.017 3.8E-07 56.4 7.9 75 18-120 125-199 (283)
71 PF00056 Ldh_1_N: lactate/mala 96.2 0.012 2.7E-07 51.4 6.2 74 20-120 1-78 (141)
72 PRK10637 cysG siroheme synthas 96.1 0.046 9.9E-07 57.5 11.0 104 16-151 9-112 (457)
73 COG1648 CysG Siroheme synthase 95.9 0.031 6.7E-07 52.3 8.0 100 16-147 9-108 (210)
74 PRK00258 aroE shikimate 5-dehy 95.9 0.027 5.9E-07 55.1 7.8 74 17-120 121-194 (278)
75 PRK13940 glutamyl-tRNA reducta 95.9 0.013 2.8E-07 60.7 5.6 35 16-50 178-212 (414)
76 PRK12749 quinate/shikimate deh 95.8 0.035 7.6E-07 54.7 8.3 83 17-119 122-204 (288)
77 PRK00066 ldh L-lactate dehydro 95.6 0.036 7.9E-07 55.3 7.6 74 19-119 6-81 (315)
78 PF03446 NAD_binding_2: NAD bi 95.6 0.0063 1.4E-07 54.6 1.9 117 20-147 2-123 (163)
79 PF02254 TrkA_N: TrkA-N domain 95.6 0.069 1.5E-06 44.5 8.2 86 22-135 1-86 (116)
80 cd05291 HicDH_like L-2-hydroxy 95.6 0.027 5.8E-07 56.0 6.4 72 20-120 1-77 (306)
81 cd01065 NAD_bind_Shikimate_DH 95.5 0.026 5.6E-07 49.7 5.7 35 17-51 17-51 (155)
82 cd05290 LDH_3 A subgroup of L- 95.3 0.06 1.3E-06 53.5 7.9 70 21-119 1-76 (307)
83 cd05311 NAD_bind_2_malic_enz N 95.2 0.021 4.6E-07 54.1 4.2 37 16-52 22-60 (226)
84 TIGR01035 hemA glutamyl-tRNA r 95.1 0.046 1E-06 56.7 6.5 35 17-51 178-212 (417)
85 cd05213 NAD_bind_Glutamyl_tRNA 95.0 0.063 1.4E-06 53.5 7.0 35 17-51 176-210 (311)
86 PF03807 F420_oxidored: NADP o 95.0 0.051 1.1E-06 43.7 5.2 89 21-142 1-93 (96)
87 PRK14106 murD UDP-N-acetylmura 95.0 0.096 2.1E-06 54.8 8.6 36 17-53 3-38 (450)
88 PF01113 DapB_N: Dihydrodipico 94.9 0.15 3.3E-06 43.4 8.1 98 21-147 2-101 (124)
89 cd05293 LDH_1 A subgroup of L- 94.8 0.082 1.8E-06 52.7 7.4 73 19-119 3-79 (312)
90 PRK09496 trkA potassium transp 94.8 0.14 3.1E-06 53.4 9.5 98 17-140 229-326 (453)
91 PLN00203 glutamyl-tRNA reducta 94.8 0.051 1.1E-06 57.8 6.0 34 17-50 264-297 (519)
92 PRK09496 trkA potassium transp 94.7 0.2 4.4E-06 52.3 10.4 97 21-144 2-99 (453)
93 cd00300 LDH_like L-lactate deh 94.6 0.099 2.1E-06 51.8 7.4 71 22-120 1-75 (300)
94 PLN02602 lactate dehydrogenase 94.6 0.091 2E-06 53.1 7.0 72 20-119 38-113 (350)
95 COG1893 ApbA Ketopantoate redu 94.5 0.33 7.1E-06 48.3 10.6 29 20-49 1-29 (307)
96 PTZ00082 L-lactate dehydrogena 94.5 0.12 2.5E-06 51.8 7.4 35 17-51 4-38 (321)
97 PRK09599 6-phosphogluconate de 94.4 0.11 2.3E-06 51.5 7.0 118 21-147 2-123 (301)
98 PTZ00117 malate dehydrogenase; 94.3 0.095 2.1E-06 52.4 6.4 35 17-51 3-37 (319)
99 PRK01438 murD UDP-N-acetylmura 94.2 0.24 5.1E-06 52.4 9.5 35 17-52 14-48 (480)
100 cd01078 NAD_bind_H4MPT_DH NADP 94.1 0.16 3.5E-06 46.7 7.0 81 16-121 25-107 (194)
101 PF00070 Pyr_redox: Pyridine n 94.1 0.088 1.9E-06 41.0 4.5 58 21-92 1-58 (80)
102 PRK05708 2-dehydropantoate 2-r 94.0 0.33 7.2E-06 48.1 9.5 33 19-52 2-34 (305)
103 PLN02819 lysine-ketoglutarate 93.9 0.33 7.2E-06 55.6 10.2 97 18-142 568-678 (1042)
104 TIGR01759 MalateDH-SF1 malate 93.8 0.12 2.6E-06 51.7 6.0 31 20-50 4-41 (323)
105 PRK00811 spermidine synthase; 93.8 0.42 9.1E-06 46.9 9.7 76 18-118 76-157 (283)
106 PRK03562 glutathione-regulated 93.7 0.23 5E-06 54.3 8.5 90 19-136 400-489 (621)
107 PF01210 NAD_Gly3P_dh_N: NAD-d 93.6 0.03 6.5E-07 49.9 1.2 32 21-53 1-32 (157)
108 cd05191 NAD_bind_amino_acid_DH 93.6 0.12 2.5E-06 41.0 4.5 37 17-53 21-57 (86)
109 PRK07634 pyrroline-5-carboxyla 93.6 0.28 6E-06 46.8 8.0 26 18-43 3-28 (245)
110 TIGR02992 ectoine_eutC ectoine 93.3 0.24 5.3E-06 49.6 7.2 75 19-121 129-204 (326)
111 PTZ00142 6-phosphogluconate de 93.2 0.19 4.1E-06 53.0 6.5 123 20-147 2-130 (470)
112 PRK03659 glutathione-regulated 93.1 0.33 7.2E-06 52.9 8.5 89 19-136 400-489 (601)
113 PRK06522 2-dehydropantoate 2-r 93.0 0.56 1.2E-05 46.1 9.2 30 21-51 2-31 (304)
114 PRK11880 pyrroline-5-carboxyla 92.9 0.35 7.7E-06 46.7 7.7 31 20-50 3-35 (267)
115 TIGR00873 gnd 6-phosphoglucona 92.9 0.21 4.6E-06 52.5 6.4 121 21-147 1-127 (467)
116 PLN02350 phosphogluconate dehy 92.9 0.18 3.9E-06 53.3 5.8 123 20-147 7-136 (493)
117 PF13460 NAD_binding_10: NADH( 92.9 0.59 1.3E-05 42.0 8.6 97 22-149 1-103 (183)
118 PRK06130 3-hydroxybutyryl-CoA 92.8 0.58 1.3E-05 46.4 9.1 32 20-52 5-36 (311)
119 PF10727 Rossmann-like: Rossma 92.8 0.3 6.5E-06 41.9 6.0 71 17-121 8-78 (127)
120 PRK06141 ornithine cyclodeamin 92.7 0.29 6.3E-06 48.8 6.9 77 16-121 122-199 (314)
121 COG0039 Mdh Malate/lactate deh 92.7 0.18 4E-06 49.9 5.2 31 20-50 1-32 (313)
122 PRK07502 cyclohexadienyl dehyd 92.7 0.55 1.2E-05 46.5 8.8 33 19-51 6-39 (307)
123 PLN02206 UDP-glucuronate decar 92.6 0.76 1.6E-05 48.1 10.1 33 18-51 118-151 (442)
124 TIGR00872 gnd_rel 6-phosphoglu 92.6 0.22 4.7E-06 49.2 5.7 117 21-146 2-121 (298)
125 PRK07417 arogenate dehydrogena 92.5 0.5 1.1E-05 46.2 8.1 30 21-51 2-31 (279)
126 PRK00141 murD UDP-N-acetylmura 92.5 0.53 1.1E-05 49.7 8.8 38 13-51 9-46 (473)
127 PRK08618 ornithine cyclodeamin 92.4 0.37 8E-06 48.3 7.1 77 18-122 126-203 (325)
128 TIGR01915 npdG NADPH-dependent 92.3 1.7 3.7E-05 40.8 11.2 29 21-50 2-31 (219)
129 PRK12490 6-phosphogluconate de 92.3 0.34 7.3E-06 47.9 6.7 118 21-147 2-123 (299)
130 PRK01710 murD UDP-N-acetylmura 92.3 0.59 1.3E-05 49.2 8.8 37 15-52 10-46 (458)
131 cd05292 LDH_2 A subgroup of L- 92.3 0.41 8.8E-06 47.6 7.2 31 21-51 2-33 (308)
132 TIGR00507 aroE shikimate 5-deh 92.2 0.45 9.8E-06 46.3 7.2 32 18-50 116-147 (270)
133 PRK07340 ornithine cyclodeamin 92.0 0.52 1.1E-05 46.7 7.6 75 17-121 123-198 (304)
134 PRK12491 pyrroline-5-carboxyla 92.0 0.65 1.4E-05 45.3 8.1 32 19-50 2-36 (272)
135 PRK07680 late competence prote 91.9 0.64 1.4E-05 45.2 8.1 30 21-50 2-34 (273)
136 PRK07679 pyrroline-5-carboxyla 91.9 0.53 1.1E-05 46.0 7.5 25 19-43 3-27 (279)
137 PF01118 Semialdhyde_dh: Semia 91.9 1.7 3.6E-05 36.7 9.6 90 21-142 1-96 (121)
138 KOG4169 15-hydroxyprostaglandi 91.9 0.41 8.9E-06 44.9 6.1 60 17-97 3-63 (261)
139 PF04321 RmlD_sub_bind: RmlD s 91.8 0.22 4.9E-06 48.8 4.7 103 21-148 2-105 (286)
140 PRK06197 short chain dehydroge 91.8 0.4 8.7E-06 47.2 6.6 42 9-51 6-48 (306)
141 cd01338 MDH_choloroplast_like 91.8 0.24 5.1E-06 49.6 4.9 32 20-51 3-41 (322)
142 PRK00048 dihydrodipicolinate r 91.7 0.55 1.2E-05 45.4 7.2 91 20-147 2-94 (257)
143 PRK14619 NAD(P)H-dependent gly 91.7 0.5 1.1E-05 46.9 7.1 33 19-52 4-36 (308)
144 PRK10669 putative cation:proto 91.7 0.63 1.4E-05 50.2 8.4 34 19-53 417-450 (558)
145 cd05296 GH4_P_beta_glucosidase 91.6 0.51 1.1E-05 49.0 7.2 109 21-153 2-117 (419)
146 PRK11908 NAD-dependent epimera 91.5 1.1 2.4E-05 45.0 9.5 32 20-51 2-34 (347)
147 PF02826 2-Hacid_dh_C: D-isome 91.4 0.14 3E-06 46.6 2.5 41 13-54 30-70 (178)
148 PF05237 MoeZ_MoeB: MoeZ/MoeB 91.3 0.18 4E-06 39.8 2.8 24 431-454 23-46 (84)
149 cd00704 MDH Malate dehydrogena 91.3 0.19 4.1E-06 50.3 3.5 33 20-52 1-40 (323)
150 PRK09987 dTDP-4-dehydrorhamnos 91.2 0.68 1.5E-05 45.6 7.5 107 21-149 2-109 (299)
151 PLN00016 RNA-binding protein; 91.2 1.3 2.9E-05 45.1 9.8 116 15-150 48-171 (378)
152 PRK10537 voltage-gated potassi 91.1 0.71 1.5E-05 47.5 7.6 37 15-52 236-272 (393)
153 cd01337 MDH_glyoxysomal_mitoch 91.1 0.48 1E-05 47.1 6.2 32 21-52 2-35 (310)
154 PTZ00325 malate dehydrogenase; 91.1 0.43 9.4E-06 47.7 5.9 35 17-51 6-42 (321)
155 PRK05442 malate dehydrogenase; 91.1 0.3 6.5E-06 48.9 4.8 31 20-50 5-42 (326)
156 PF03949 Malic_M: Malic enzyme 91.0 0.34 7.4E-06 46.5 4.9 40 15-54 21-70 (255)
157 PRK00676 hemA glutamyl-tRNA re 90.9 0.29 6.3E-06 49.1 4.5 36 16-51 171-206 (338)
158 KOG0069 Glyoxylate/hydroxypyru 90.8 0.82 1.8E-05 45.7 7.5 33 15-48 158-190 (336)
159 PRK02006 murD UDP-N-acetylmura 90.8 0.85 1.8E-05 48.5 8.2 35 17-52 5-39 (498)
160 PRK12921 2-dehydropantoate 2-r 90.8 1.4 3E-05 43.3 9.3 30 21-51 2-31 (305)
161 PRK06476 pyrroline-5-carboxyla 90.8 1.4 3E-05 42.5 9.0 23 21-43 2-24 (258)
162 PRK12550 shikimate 5-dehydroge 90.8 0.34 7.5E-06 47.2 4.8 32 20-51 123-154 (272)
163 cd01080 NAD_bind_m-THF_DH_Cycl 90.7 0.34 7.5E-06 43.7 4.4 35 16-51 41-76 (168)
164 PRK02705 murD UDP-N-acetylmura 90.7 1.2 2.7E-05 46.6 9.3 33 20-53 1-33 (459)
165 PRK08291 ectoine utilization p 90.7 0.73 1.6E-05 46.2 7.2 75 19-121 132-207 (330)
166 TIGR01757 Malate-DH_plant mala 90.7 0.87 1.9E-05 46.6 7.7 75 20-119 45-128 (387)
167 cd01075 NAD_bind_Leu_Phe_Val_D 90.5 0.36 7.7E-06 44.9 4.4 36 16-52 25-60 (200)
168 TIGR01771 L-LDH-NAD L-lactate 90.5 0.41 8.9E-06 47.4 5.1 67 24-119 1-72 (299)
169 PRK08229 2-dehydropantoate 2-r 90.5 1.2 2.5E-05 44.8 8.5 32 20-52 3-34 (341)
170 cd01493 APPBP1_RUB Ubiquitin a 90.4 0.71 1.5E-05 48.0 6.9 88 367-454 288-403 (425)
171 PF02558 ApbA: Ketopantoate re 90.3 0.36 7.9E-06 42.2 4.2 28 22-50 1-28 (151)
172 PRK09880 L-idonate 5-dehydroge 90.3 2.3 5E-05 42.6 10.5 34 18-51 169-202 (343)
173 PLN02166 dTDP-glucose 4,6-dehy 90.2 2.1 4.5E-05 44.8 10.3 32 19-51 120-152 (436)
174 cd01339 LDH-like_MDH L-lactate 90.1 0.99 2.1E-05 44.6 7.4 31 22-52 1-31 (300)
175 PRK13304 L-aspartate dehydroge 90.0 1 2.3E-05 43.7 7.4 31 21-51 3-35 (265)
176 COG0771 MurD UDP-N-acetylmuram 90.0 0.93 2E-05 47.2 7.4 38 17-55 5-42 (448)
177 PRK00094 gpsA NAD(P)H-dependen 90.0 2.4 5.2E-05 42.0 10.3 31 21-52 3-33 (325)
178 PTZ00431 pyrroline carboxylate 90.0 1 2.2E-05 43.6 7.2 34 18-51 2-38 (260)
179 PLN02427 UDP-apiose/xylose syn 90.0 1.4 3.1E-05 44.9 8.8 37 15-51 10-47 (386)
180 PRK09330 cell division protein 89.8 2.3 4.9E-05 43.6 9.9 37 17-53 11-49 (384)
181 cd00762 NAD_bind_malic_enz NAD 89.8 0.27 5.9E-06 47.1 3.0 40 15-54 21-70 (254)
182 PRK03803 murD UDP-N-acetylmura 89.7 1.2 2.6E-05 46.5 8.2 32 19-51 6-37 (448)
183 PRK04308 murD UDP-N-acetylmura 89.7 1.4 3.1E-05 46.0 8.7 35 17-52 3-37 (445)
184 PRK06928 pyrroline-5-carboxyla 89.7 2 4.3E-05 41.9 9.2 31 21-51 3-36 (277)
185 PRK00045 hemA glutamyl-tRNA re 89.6 0.42 9.2E-06 49.7 4.6 35 17-51 180-214 (423)
186 TIGR00065 ftsZ cell division p 89.5 2.3 5E-05 43.0 9.6 41 13-53 11-53 (349)
187 cd00650 LDH_MDH_like NAD-depen 89.4 0.99 2.1E-05 43.7 6.7 30 22-51 1-34 (263)
188 TIGR02853 spore_dpaA dipicolin 89.3 0.46 1E-05 46.7 4.4 35 16-51 148-182 (287)
189 PRK04690 murD UDP-N-acetylmura 89.3 1.5 3.2E-05 46.3 8.5 36 17-53 6-41 (468)
190 PRK14982 acyl-ACP reductase; P 89.3 0.44 9.5E-06 47.9 4.3 36 16-51 152-189 (340)
191 COG0240 GpsA Glycerol-3-phosph 89.3 0.65 1.4E-05 46.2 5.4 32 20-52 2-33 (329)
192 PRK13403 ketol-acid reductoiso 89.3 0.48 1E-05 47.1 4.4 37 13-50 10-46 (335)
193 cd05211 NAD_bind_Glu_Leu_Phe_V 89.3 0.49 1.1E-05 44.6 4.3 38 16-53 20-57 (217)
194 cd05298 GH4_GlvA_pagL_like Gly 89.2 2 4.3E-05 44.9 9.1 107 21-153 2-116 (437)
195 PLN00106 malate dehydrogenase 89.2 0.7 1.5E-05 46.3 5.6 36 18-53 17-54 (323)
196 PRK12439 NAD(P)H-dependent gly 89.2 1.3 2.8E-05 44.6 7.7 29 20-50 8-36 (341)
197 PTZ00345 glycerol-3-phosphate 89.0 1 2.2E-05 45.9 6.6 34 17-50 9-48 (365)
198 PRK07531 bifunctional 3-hydrox 89.0 1.9 4.2E-05 45.8 9.1 32 20-52 5-36 (495)
199 PRK13018 cell division protein 88.9 3.6 7.7E-05 42.1 10.5 37 17-53 26-64 (378)
200 PRK06545 prephenate dehydrogen 88.9 1.9 4.2E-05 43.7 8.7 31 20-51 1-31 (359)
201 cd02201 FtsZ_type1 FtsZ is a G 88.9 3 6.4E-05 41.4 9.8 34 21-54 2-37 (304)
202 PF02719 Polysacc_synt_2: Poly 88.9 0.44 9.6E-06 46.8 3.8 35 22-56 1-36 (293)
203 cd05312 NAD_bind_1_malic_enz N 88.8 0.54 1.2E-05 45.8 4.3 40 15-54 21-70 (279)
204 PRK15059 tartronate semialdehy 88.8 1.9 4E-05 42.6 8.3 114 21-146 2-121 (292)
205 cd01076 NAD_bind_1_Glu_DH NAD( 88.8 1.6 3.5E-05 41.4 7.5 38 15-52 27-64 (227)
206 TIGR03376 glycerol3P_DH glycer 88.7 1.7 3.6E-05 43.9 8.0 31 21-51 1-38 (342)
207 COG2084 MmsB 3-hydroxyisobutyr 88.7 1 2.3E-05 44.1 6.3 118 20-147 1-124 (286)
208 cd05197 GH4_glycoside_hydrolas 88.6 3 6.4E-05 43.5 9.9 108 21-153 2-116 (425)
209 TIGR01373 soxB sarcosine oxida 88.6 0.46 9.9E-06 48.9 4.0 44 19-62 30-74 (407)
210 COG1063 Tdh Threonine dehydrog 88.3 3.1 6.7E-05 42.1 9.7 94 20-138 170-265 (350)
211 PRK05225 ketol-acid reductoiso 88.2 0.27 5.9E-06 50.9 2.0 43 4-46 17-63 (487)
212 PRK09242 tropinone reductase; 88.0 1.8 4E-05 41.1 7.5 34 16-50 6-40 (257)
213 PRK15469 ghrA bifunctional gly 88.0 0.39 8.5E-06 47.8 2.9 43 8-51 125-167 (312)
214 PRK08217 fabG 3-ketoacyl-(acyl 87.9 1.3 2.8E-05 41.8 6.4 33 17-50 3-36 (253)
215 KOG0024 Sorbitol dehydrogenase 87.8 3 6.4E-05 41.4 8.6 32 19-50 170-201 (354)
216 PLN02366 spermidine synthase 87.6 3.1 6.7E-05 41.4 9.0 34 18-53 91-125 (308)
217 COG1086 Predicted nucleoside-d 87.6 2.3 5.1E-05 45.2 8.4 64 12-94 243-307 (588)
218 PLN02240 UDP-glucose 4-epimera 87.6 4.4 9.6E-05 40.5 10.4 33 17-50 3-36 (352)
219 PLN02688 pyrroline-5-carboxyla 87.5 3.2 6.9E-05 40.0 8.9 29 21-49 2-33 (266)
220 PRK13302 putative L-aspartate 87.5 2.3 5.1E-05 41.4 7.9 33 18-50 5-39 (271)
221 PLN02928 oxidoreductase family 87.4 0.45 9.8E-06 48.1 3.0 42 9-51 149-190 (347)
222 PRK08125 bifunctional UDP-gluc 87.4 2.7 5.8E-05 46.4 9.2 40 12-51 308-348 (660)
223 PRK13301 putative L-aspartate 87.2 1.6 3.4E-05 42.3 6.4 108 20-139 3-117 (267)
224 PRK02472 murD UDP-N-acetylmura 87.2 2.3 4.9E-05 44.4 8.3 35 17-52 3-37 (447)
225 TIGR00417 speE spermidine synt 87.0 5 0.00011 38.9 10.0 32 19-52 73-105 (270)
226 PLN00141 Tic62-NAD(P)-related 87.0 2.9 6.3E-05 39.8 8.3 34 15-49 13-47 (251)
227 PRK15461 NADH-dependent gamma- 86.9 1.2 2.5E-05 44.1 5.5 33 20-53 2-34 (296)
228 PRK12367 short chain dehydroge 86.9 1.1 2.3E-05 42.9 5.1 40 12-52 7-47 (245)
229 PRK08655 prephenate dehydrogen 86.8 1.8 3.9E-05 45.3 7.1 30 21-51 2-32 (437)
230 PLN03209 translocon at the inn 86.8 4.8 0.00011 43.3 10.4 32 18-50 79-111 (576)
231 PRK01581 speE spermidine synth 86.8 3.9 8.5E-05 41.5 9.2 37 16-53 148-184 (374)
232 PRK12826 3-ketoacyl-(acyl-carr 86.7 0.91 2E-05 42.8 4.6 35 16-51 3-38 (251)
233 PLN02657 3,8-divinyl protochlo 86.7 4.9 0.00011 41.3 10.2 33 18-51 59-92 (390)
234 PRK08306 dipicolinate synthase 86.6 0.89 1.9E-05 44.9 4.5 35 17-52 150-184 (296)
235 PLN02572 UDP-sulfoquinovose sy 86.5 1.9 4.1E-05 45.2 7.1 35 16-51 44-79 (442)
236 PLN02520 bifunctional 3-dehydr 86.5 0.79 1.7E-05 49.1 4.4 34 17-51 377-410 (529)
237 TIGR00715 precor6x_red precorr 86.5 6.2 0.00013 38.1 10.1 92 20-142 1-98 (256)
238 COG1091 RfbD dTDP-4-dehydrorha 86.4 2.8 6E-05 41.0 7.7 98 21-144 2-100 (281)
239 PRK13243 glyoxylate reductase; 86.4 0.87 1.9E-05 45.8 4.4 36 15-51 146-181 (333)
240 TIGR01202 bchC 2-desacetyl-2-h 86.4 3.6 7.8E-05 40.6 8.8 34 18-51 144-177 (308)
241 PRK04663 murD UDP-N-acetylmura 86.4 2 4.3E-05 44.9 7.2 38 15-52 2-41 (438)
242 COG0665 DadA Glycine/D-amino a 86.3 0.99 2.2E-05 45.8 4.9 44 18-62 3-46 (387)
243 PRK06046 alanine dehydrogenase 86.3 3 6.5E-05 41.8 8.2 75 18-121 128-203 (326)
244 PRK06035 3-hydroxyacyl-CoA deh 86.2 0.96 2.1E-05 44.4 4.5 33 20-53 4-36 (291)
245 PRK05854 short chain dehydroge 86.2 2.4 5.1E-05 42.0 7.4 34 16-50 11-45 (313)
246 PRK11150 rfaD ADP-L-glycero-D- 86.1 4.1 8.8E-05 40.0 9.0 31 22-52 2-33 (308)
247 PRK11559 garR tartronate semia 86.1 1.1 2.4E-05 44.0 4.9 32 20-52 3-34 (296)
248 PRK08818 prephenate dehydrogen 86.0 1.9 4.2E-05 43.9 6.6 34 18-51 3-37 (370)
249 PRK06199 ornithine cyclodeamin 85.9 2.5 5.5E-05 43.2 7.6 76 19-121 155-233 (379)
250 PF01408 GFO_IDH_MocA: Oxidore 85.9 2.4 5.1E-05 35.2 6.2 87 21-140 2-90 (120)
251 PRK08213 gluconate 5-dehydroge 85.9 2.1 4.5E-05 40.8 6.6 34 16-50 9-43 (259)
252 PRK06436 glycerate dehydrogena 85.8 0.61 1.3E-05 46.3 2.9 43 9-52 112-154 (303)
253 PRK11259 solA N-methyltryptoph 85.8 0.91 2E-05 45.9 4.3 35 19-54 3-37 (376)
254 COG0421 SpeE Spermidine syntha 85.8 3.9 8.4E-05 40.1 8.4 29 20-51 78-108 (282)
255 COG1486 CelF Alpha-galactosida 85.7 1.5 3.3E-05 45.3 5.7 110 18-152 2-118 (442)
256 PRK05479 ketol-acid reductoiso 85.6 1 2.2E-05 45.1 4.3 36 14-50 12-47 (330)
257 PRK03806 murD UDP-N-acetylmura 85.6 3.7 7.9E-05 42.8 8.7 35 17-52 4-38 (438)
258 PF02737 3HCDH_N: 3-hydroxyacy 85.4 1 2.2E-05 41.1 3.9 32 21-53 1-32 (180)
259 PF01266 DAO: FAD dependent ox 85.4 1.1 2.4E-05 44.3 4.7 34 21-55 1-34 (358)
260 PRK12480 D-lactate dehydrogena 85.4 1.1 2.4E-05 45.0 4.5 37 15-52 142-178 (330)
261 COG0281 SfcA Malic enzyme [Ene 85.3 0.86 1.9E-05 46.6 3.6 40 15-54 195-236 (432)
262 PRK07530 3-hydroxybutyryl-CoA 85.3 1.1 2.4E-05 44.0 4.5 33 19-52 4-36 (292)
263 PRK12409 D-amino acid dehydrog 85.2 1.1 2.4E-05 46.1 4.6 33 20-53 2-34 (410)
264 PRK15076 alpha-galactosidase; 85.2 4.4 9.5E-05 42.3 9.0 108 20-154 2-121 (431)
265 PLN00112 malate dehydrogenase 85.1 2.5 5.3E-05 44.2 7.0 75 19-120 100-185 (444)
266 PRK05808 3-hydroxybutyryl-CoA 85.1 1.2 2.6E-05 43.5 4.6 32 20-52 4-35 (282)
267 COG1712 Predicted dinucleotide 85.1 2.9 6.3E-05 39.3 6.7 32 21-53 2-36 (255)
268 PF02134 UBACT: Repeat in ubiq 85.0 4.1 8.8E-05 30.7 6.4 57 396-454 9-65 (67)
269 PRK07063 short chain dehydroge 84.8 3 6.5E-05 39.7 7.2 34 16-50 4-38 (260)
270 TIGR01505 tartro_sem_red 2-hyd 84.8 1.4 3E-05 43.2 4.9 32 21-53 1-32 (291)
271 PRK07062 short chain dehydroge 84.8 3.7 8.1E-05 39.1 7.8 34 17-51 6-40 (265)
272 TIGR00518 alaDH alanine dehydr 84.7 1.2 2.6E-05 45.5 4.5 35 17-52 165-199 (370)
273 PRK09260 3-hydroxybutyryl-CoA 84.7 1.3 2.8E-05 43.5 4.6 33 20-53 2-34 (288)
274 TIGR01692 HIBADH 3-hydroxyisob 84.6 0.94 2E-05 44.4 3.6 112 24-146 1-118 (288)
275 PRK06223 malate dehydrogenase; 84.5 1.3 2.8E-05 43.8 4.6 32 20-51 3-34 (307)
276 COG1023 Gnd Predicted 6-phosph 84.5 3.5 7.7E-05 39.1 7.0 129 21-159 2-140 (300)
277 PRK05476 S-adenosyl-L-homocyst 84.4 1.2 2.6E-05 46.2 4.4 36 17-53 210-245 (425)
278 PRK07819 3-hydroxybutyryl-CoA 84.4 1.3 2.8E-05 43.5 4.5 33 20-53 6-38 (286)
279 PRK06249 2-dehydropantoate 2-r 84.4 1.3 2.8E-05 44.1 4.5 34 19-53 5-38 (313)
280 COG1064 AdhP Zn-dependent alco 84.4 7.1 0.00015 39.2 9.6 89 19-138 167-255 (339)
281 TIGR01214 rmlD dTDP-4-dehydror 84.4 3.7 8.1E-05 39.6 7.7 104 21-149 1-105 (287)
282 TIGR01377 soxA_mon sarcosine o 84.3 1.3 2.8E-05 44.9 4.5 33 21-54 2-34 (380)
283 PRK05335 tRNA (uracil-5-)-meth 84.1 1.3 2.9E-05 45.9 4.5 32 19-51 2-33 (436)
284 cd00401 AdoHcyase S-adenosyl-L 84.1 1.3 2.8E-05 45.8 4.5 35 17-52 200-234 (413)
285 PF01494 FAD_binding_3: FAD bi 84.1 1.2 2.5E-05 44.1 4.1 34 20-54 2-35 (356)
286 PRK08293 3-hydroxybutyryl-CoA 84.0 1.4 3.1E-05 43.1 4.6 32 20-52 4-35 (287)
287 PLN02545 3-hydroxybutyryl-CoA 83.9 1.4 3.1E-05 43.3 4.6 32 20-52 5-36 (295)
288 PRK06184 hypothetical protein; 83.9 1.3 2.8E-05 47.1 4.5 34 18-52 2-35 (502)
289 PRK00421 murC UDP-N-acetylmura 83.7 3.1 6.8E-05 43.7 7.3 34 18-52 6-40 (461)
290 cd08230 glucose_DH Glucose deh 83.6 6.5 0.00014 39.5 9.3 33 18-51 172-204 (355)
291 TIGR02469 CbiT precorrin-6Y C5 83.5 11 0.00024 31.0 9.3 31 19-50 20-50 (124)
292 PRK09126 hypothetical protein; 83.4 1.4 3E-05 45.0 4.3 36 18-54 2-37 (392)
293 TIGR00036 dapB dihydrodipicoli 83.3 3.2 6.9E-05 40.3 6.6 31 20-50 2-34 (266)
294 TIGR03364 HpnW_proposed FAD de 83.3 2 4.3E-05 43.4 5.4 34 21-55 2-35 (365)
295 TIGR01763 MalateDH_bact malate 83.3 1.6 3.4E-05 43.4 4.6 32 20-51 2-33 (305)
296 PRK00536 speE spermidine synth 83.3 4.5 9.7E-05 39.2 7.5 30 19-53 73-104 (262)
297 PRK13303 L-aspartate dehydroge 83.3 9.7 0.00021 36.9 10.0 22 20-41 2-23 (265)
298 TIGR00465 ilvC ketol-acid redu 83.1 1.2 2.7E-05 44.3 3.7 33 17-50 1-33 (314)
299 PRK00257 erythronate-4-phospha 83.0 1.5 3.2E-05 45.0 4.3 35 16-51 113-147 (381)
300 PRK07231 fabG 3-ketoacyl-(acyl 83.0 1.4 3.1E-05 41.5 4.0 34 17-51 3-37 (251)
301 PF10087 DUF2325: Uncharacteri 83.0 4.4 9.4E-05 32.8 6.3 73 73-148 10-87 (97)
302 cd05313 NAD_bind_2_Glu_DH NAD( 82.9 6.4 0.00014 38.0 8.4 36 16-51 35-70 (254)
303 PRK06129 3-hydroxyacyl-CoA deh 82.9 1.6 3.4E-05 43.3 4.4 32 21-53 4-35 (308)
304 PRK05866 short chain dehydroge 82.9 3.6 7.9E-05 40.3 7.0 34 16-50 37-71 (293)
305 PRK09310 aroDE bifunctional 3- 82.8 1.5 3.3E-05 46.3 4.5 33 17-50 330-362 (477)
306 PRK15438 erythronate-4-phospha 82.8 1.5 3.3E-05 44.8 4.3 35 16-51 113-147 (378)
307 PRK08264 short chain dehydroge 82.8 1.8 3.8E-05 40.6 4.6 35 17-51 4-39 (238)
308 PF13738 Pyr_redox_3: Pyridine 82.7 1.6 3.4E-05 39.9 4.0 30 23-52 1-30 (203)
309 PRK12779 putative bifunctional 82.6 5.3 0.00012 45.9 9.0 34 18-52 305-338 (944)
310 PRK15181 Vi polysaccharide bio 82.6 4.3 9.3E-05 40.8 7.6 36 16-52 12-48 (348)
311 PRK11873 arsM arsenite S-adeno 82.6 10 0.00022 36.6 9.9 33 18-51 77-110 (272)
312 PRK06185 hypothetical protein; 82.6 1.3 2.7E-05 45.5 3.7 35 18-53 5-39 (407)
313 COG0362 Gnd 6-phosphogluconate 82.6 4.4 9.6E-05 41.2 7.2 126 18-146 2-130 (473)
314 PRK08773 2-octaprenyl-3-methyl 82.6 1.5 3.2E-05 44.8 4.2 35 18-53 5-39 (392)
315 COG2227 UbiG 2-polyprenyl-3-me 82.5 1.7 3.6E-05 41.3 4.1 116 17-160 58-179 (243)
316 PRK08251 short chain dehydroge 82.5 5.1 0.00011 37.7 7.7 32 19-51 2-34 (248)
317 TIGR02371 ala_DH_arch alanine 82.3 6.1 0.00013 39.5 8.4 74 19-121 128-202 (325)
318 TIGR02028 ChlP geranylgeranyl 82.2 1.6 3.5E-05 45.0 4.3 31 21-52 2-32 (398)
319 TIGR01087 murD UDP-N-acetylmur 82.0 5.4 0.00012 41.4 8.2 31 21-52 1-31 (433)
320 PF02629 CoA_binding: CoA bind 82.0 8.6 0.00019 30.9 7.7 33 18-50 2-35 (96)
321 KOG1205 Predicted dehydrogenas 82.0 4.7 0.0001 39.5 7.1 40 10-49 3-43 (282)
322 PLN02172 flavin-containing mon 82.0 1.4 3E-05 46.4 3.8 37 15-52 6-42 (461)
323 PRK06139 short chain dehydroge 81.9 3.1 6.7E-05 41.7 6.1 35 16-51 4-39 (330)
324 PRK07494 2-octaprenyl-6-methox 81.9 1.6 3.5E-05 44.4 4.2 34 19-53 7-40 (388)
325 PRK07608 ubiquinone biosynthes 81.9 1.8 3.9E-05 44.0 4.5 35 19-54 5-39 (388)
326 cd01492 Aos1_SUMO Ubiquitin ac 81.8 1 2.2E-05 41.7 2.4 21 434-454 155-175 (197)
327 PRK07791 short chain dehydroge 81.8 3.4 7.3E-05 40.3 6.3 34 16-50 3-37 (286)
328 PRK07236 hypothetical protein; 81.8 1.8 3.9E-05 44.2 4.5 36 17-53 4-39 (386)
329 PRK07576 short chain dehydroge 81.8 1.4 3.1E-05 42.2 3.6 38 13-51 3-41 (264)
330 PTZ00318 NADH dehydrogenase-li 81.7 2.5 5.5E-05 43.9 5.6 37 16-53 7-43 (424)
331 PRK05472 redox-sensing transcr 81.7 6.4 0.00014 36.7 7.8 34 19-52 84-119 (213)
332 PTZ00188 adrenodoxin reductase 81.6 3.4 7.3E-05 43.7 6.4 36 18-54 38-74 (506)
333 PRK06270 homoserine dehydrogen 81.5 7.1 0.00015 39.4 8.6 22 20-41 3-24 (341)
334 TIGR03206 benzo_BadH 2-hydroxy 81.5 3.1 6.6E-05 39.2 5.7 33 17-50 1-34 (250)
335 PRK06523 short chain dehydroge 81.4 4.6 0.0001 38.3 7.0 37 16-53 6-43 (260)
336 cd08239 THR_DH_like L-threonin 81.4 11 0.00024 37.4 9.9 32 19-50 164-195 (339)
337 PRK09754 phenylpropionate diox 81.3 1.8 4E-05 44.4 4.4 36 18-53 2-38 (396)
338 PRK01747 mnmC bifunctional tRN 81.3 1.8 3.9E-05 47.8 4.5 33 20-53 261-293 (662)
339 PRK12939 short chain dehydroge 81.2 4 8.7E-05 38.3 6.4 33 17-50 5-38 (250)
340 PRK06398 aldose dehydrogenase; 81.1 4.4 9.5E-05 38.7 6.7 36 16-52 3-39 (258)
341 PRK00436 argC N-acetyl-gamma-g 81.1 6.9 0.00015 39.5 8.3 29 20-48 3-32 (343)
342 PRK06194 hypothetical protein; 81.1 1.5 3.3E-05 42.4 3.5 35 16-51 3-38 (287)
343 PRK11101 glpA sn-glycerol-3-ph 81.1 2.4 5.3E-05 45.6 5.4 36 19-55 6-41 (546)
344 PF01564 Spermine_synth: Sperm 81.0 2.6 5.7E-05 40.4 5.0 34 18-53 76-110 (246)
345 PRK05714 2-octaprenyl-3-methyl 80.9 1.8 3.9E-05 44.5 4.1 33 20-53 3-35 (405)
346 PF05368 NmrA: NmrA-like famil 80.9 13 0.00028 34.7 9.8 95 22-144 1-102 (233)
347 PLN02494 adenosylhomocysteinas 80.8 2.1 4.6E-05 44.8 4.5 36 17-53 252-287 (477)
348 COG1062 AdhC Zn-dependent alco 80.7 13 0.00029 37.2 9.7 98 19-146 186-288 (366)
349 PRK14192 bifunctional 5,10-met 80.7 2.1 4.6E-05 42.0 4.3 34 16-50 156-190 (283)
350 PRK08850 2-octaprenyl-6-methox 80.6 1.8 4E-05 44.4 4.1 33 19-52 4-36 (405)
351 PRK07478 short chain dehydroge 80.5 4.6 0.0001 38.2 6.6 33 17-50 4-37 (254)
352 TIGR02032 GG-red-SF geranylger 80.4 2.2 4.8E-05 41.1 4.4 33 21-54 2-34 (295)
353 PF13450 NAD_binding_8: NAD(P) 80.4 2.7 5.9E-05 31.6 3.9 28 24-52 1-28 (68)
354 PTZ00075 Adenosylhomocysteinas 80.4 2.2 4.8E-05 44.8 4.5 37 16-53 251-287 (476)
355 PRK08849 2-octaprenyl-3-methyl 80.3 2 4.3E-05 43.9 4.2 34 19-53 3-36 (384)
356 PRK00711 D-amino acid dehydrog 80.2 2.2 4.9E-05 43.8 4.6 32 21-53 2-33 (416)
357 PRK07066 3-hydroxybutyryl-CoA 80.2 2.3 5E-05 42.5 4.5 33 20-53 8-40 (321)
358 TIGR00137 gid_trmFO tRNA:m(5)U 80.2 2.2 4.9E-05 44.3 4.5 31 20-51 1-31 (433)
359 TIGR01292 TRX_reduct thioredox 80.1 2.4 5.2E-05 41.1 4.6 32 21-53 2-33 (300)
360 PF12847 Methyltransf_18: Meth 80.1 13 0.00027 30.2 8.3 77 19-119 2-78 (112)
361 CHL00194 ycf39 Ycf39; Provisio 80.1 8.5 0.00018 38.1 8.5 29 21-50 2-31 (317)
362 PRK08013 oxidoreductase; Provi 80.1 2 4.4E-05 44.1 4.2 34 19-53 3-36 (400)
363 PLN02653 GDP-mannose 4,6-dehyd 80.1 6 0.00013 39.4 7.5 34 17-51 4-38 (340)
364 PRK06487 glycerate dehydrogena 80.0 2.1 4.6E-05 42.7 4.1 36 15-51 144-179 (317)
365 PRK14618 NAD(P)H-dependent gly 80.0 2.3 5E-05 42.5 4.5 32 20-52 5-36 (328)
366 TIGR01772 MDH_euk_gproteo mala 79.9 2.2 4.8E-05 42.5 4.2 33 21-53 1-35 (312)
367 PLN02780 ketoreductase/ oxidor 79.9 6.2 0.00013 39.3 7.5 55 18-92 52-107 (320)
368 TIGR03329 Phn_aa_oxid putative 79.8 2.7 5.8E-05 44.2 5.1 44 19-62 24-68 (460)
369 PRK06932 glycerate dehydrogena 79.7 1.5 3.3E-05 43.7 3.0 35 15-50 143-177 (314)
370 PRK06198 short chain dehydroge 79.7 1.7 3.8E-05 41.2 3.4 36 16-51 3-39 (260)
371 PRK07792 fabG 3-ketoacyl-(acyl 79.6 5.9 0.00013 39.0 7.2 35 15-50 8-43 (306)
372 PF00106 adh_short: short chai 79.6 2.2 4.9E-05 37.4 3.8 33 20-52 1-34 (167)
373 PRK14620 NAD(P)H-dependent gly 79.6 2.4 5.1E-05 42.3 4.4 31 21-52 2-32 (326)
374 TIGR01850 argC N-acetyl-gamma- 79.6 9.8 0.00021 38.5 8.8 96 21-143 2-99 (346)
375 PRK07574 formate dehydrogenase 79.5 2.3 4.9E-05 43.7 4.3 36 15-51 188-223 (385)
376 PRK10309 galactitol-1-phosphat 79.5 15 0.00032 36.7 10.2 33 18-50 160-192 (347)
377 COG0686 Ald Alanine dehydrogen 79.5 3.8 8.3E-05 40.4 5.5 35 17-52 166-200 (371)
378 cd08281 liver_ADH_like1 Zinc-d 79.5 12 0.00026 37.9 9.6 32 19-50 192-223 (371)
379 PRK07666 fabG 3-ketoacyl-(acyl 79.4 2.1 4.6E-05 40.1 3.8 35 16-51 4-39 (239)
380 PTZ00079 NADP-specific glutama 79.3 9.2 0.0002 40.0 8.6 37 16-52 234-270 (454)
381 TIGR00936 ahcY adenosylhomocys 79.2 2.4 5.3E-05 43.7 4.3 36 17-53 193-228 (406)
382 PRK08163 salicylate hydroxylas 79.1 2.5 5.5E-05 43.1 4.5 34 19-53 4-37 (396)
383 PRK08374 homoserine dehydrogen 79.0 11 0.00023 38.1 8.8 21 20-40 3-23 (336)
384 PRK12862 malic enzyme; Reviewe 79.0 1.8 4E-05 48.2 3.7 40 15-54 189-230 (763)
385 PF00743 FMO-like: Flavin-bind 79.0 2.3 4.9E-05 45.7 4.2 32 19-51 1-32 (531)
386 TIGR01988 Ubi-OHases Ubiquinon 79.0 2.4 5.1E-05 42.9 4.3 33 21-54 1-33 (385)
387 PRK08057 cobalt-precorrin-6x r 78.9 21 0.00045 34.3 10.4 94 19-142 2-98 (248)
388 PRK07589 ornithine cyclodeamin 78.9 5.6 0.00012 40.2 6.8 74 19-121 129-203 (346)
389 PRK06753 hypothetical protein; 78.9 2.8 6E-05 42.4 4.7 32 21-53 2-33 (373)
390 COG1250 FadB 3-hydroxyacyl-CoA 78.9 4.2 9E-05 40.3 5.7 32 20-52 4-35 (307)
391 KOG0685 Flavin-containing amin 78.8 2.6 5.7E-05 43.8 4.4 40 12-51 14-53 (498)
392 PRK07856 short chain dehydroge 78.7 7.1 0.00015 36.9 7.3 36 17-53 4-40 (252)
393 COG0287 TyrA Prephenate dehydr 78.7 2.2 4.9E-05 41.7 3.8 27 19-45 3-29 (279)
394 PRK07364 2-octaprenyl-6-methox 78.6 2.6 5.6E-05 43.3 4.5 35 19-54 18-52 (415)
395 PLN02256 arogenate dehydrogena 78.6 2.6 5.7E-05 41.8 4.3 35 16-51 33-67 (304)
396 PRK08945 putative oxoacyl-(acy 78.5 3 6.5E-05 39.4 4.5 36 15-51 8-44 (247)
397 PRK11730 fadB multifunctional 78.4 4.3 9.4E-05 45.2 6.4 32 20-52 314-345 (715)
398 PRK14806 bifunctional cyclohex 78.4 8.1 0.00018 43.2 8.6 32 20-51 4-36 (735)
399 PRK08244 hypothetical protein; 78.4 2.6 5.7E-05 44.6 4.5 33 19-52 2-34 (493)
400 PLN03075 nicotianamine synthas 78.3 21 0.00046 35.2 10.4 112 18-154 123-244 (296)
401 PRK08265 short chain dehydroge 78.3 2.1 4.6E-05 40.9 3.5 34 16-50 3-37 (261)
402 PRK06847 hypothetical protein; 78.3 2.9 6.3E-05 42.2 4.7 34 19-53 4-37 (375)
403 PRK09414 glutamate dehydrogena 78.3 11 0.00024 39.4 8.8 36 16-51 229-264 (445)
404 TIGR02023 BchP-ChlP geranylger 78.2 2.8 6.1E-05 42.8 4.6 31 21-52 2-32 (388)
405 PRK06834 hypothetical protein; 78.2 2.7 5.9E-05 44.6 4.5 35 18-53 2-36 (488)
406 PRK12266 glpD glycerol-3-phosp 78.1 3.4 7.4E-05 44.1 5.3 43 19-62 6-48 (508)
407 PRK08410 2-hydroxyacid dehydro 78.1 2.7 5.8E-05 41.9 4.2 36 15-51 141-176 (311)
408 PRK06841 short chain dehydroge 78.1 3 6.5E-05 39.5 4.4 33 17-50 13-46 (255)
409 PRK08507 prephenate dehydrogen 78.1 3 6.4E-05 40.6 4.5 31 21-51 2-33 (275)
410 TIGR01984 UbiH 2-polyprenyl-6- 78.0 2.5 5.4E-05 42.9 4.1 32 21-53 1-33 (382)
411 PLN03139 formate dehydrogenase 77.9 2.6 5.6E-05 43.3 4.1 36 15-51 195-230 (386)
412 PRK07109 short chain dehydroge 77.9 5.6 0.00012 39.8 6.5 34 16-50 5-39 (334)
413 TIGR01758 MDH_euk_cyt malate d 77.9 2.7 5.8E-05 42.1 4.1 31 21-51 1-38 (324)
414 PLN02383 aspartate semialdehyd 77.9 12 0.00026 37.8 8.9 30 19-48 7-37 (344)
415 TIGR01790 carotene-cycl lycope 77.9 2.7 5.8E-05 42.8 4.3 30 22-52 2-31 (388)
416 TIGR01181 dTDP_gluc_dehyt dTDP 77.9 11 0.00023 36.7 8.4 31 21-51 1-33 (317)
417 PRK00517 prmA ribosomal protei 77.8 23 0.0005 33.8 10.5 34 18-53 119-152 (250)
418 PRK08300 acetaldehyde dehydrog 77.8 23 0.00049 35.1 10.5 98 18-143 3-101 (302)
419 PRK11728 hydroxyglutarate oxid 77.8 3 6.4E-05 42.7 4.6 33 20-53 3-37 (393)
420 TIGR01777 yfcH conserved hypot 77.8 14 0.00031 35.4 9.3 31 22-53 1-32 (292)
421 PRK14030 glutamate dehydrogena 77.7 15 0.00032 38.5 9.5 37 16-52 225-261 (445)
422 PF10100 DUF2338: Uncharacteri 77.7 18 0.00038 37.1 9.7 55 20-93 2-56 (429)
423 PRK14031 glutamate dehydrogena 77.7 9.2 0.0002 39.9 8.0 37 16-52 225-261 (444)
424 PRK07190 hypothetical protein; 77.5 3 6.6E-05 44.2 4.7 33 20-53 6-38 (487)
425 PRK05868 hypothetical protein; 77.4 3.2 6.9E-05 42.3 4.6 33 20-53 2-34 (372)
426 PLN02740 Alcohol dehydrogenase 77.4 16 0.00035 37.2 9.8 33 19-51 199-231 (381)
427 PLN02695 GDP-D-mannose-3',5'-e 77.4 8.6 0.00019 39.1 7.8 33 18-51 20-53 (370)
428 PLN02464 glycerol-3-phosphate 77.3 3.3 7.2E-05 45.4 5.0 41 20-61 72-112 (627)
429 PRK07523 gluconate 5-dehydroge 77.3 3.2 7E-05 39.3 4.4 35 16-51 7-42 (255)
430 COG0111 SerA Phosphoglycerate 77.3 1.9 4.1E-05 43.2 2.9 35 16-51 139-173 (324)
431 cd05297 GH4_alpha_glucosidase_ 77.3 9.7 0.00021 39.6 8.2 32 21-52 2-38 (423)
432 PRK06617 2-octaprenyl-6-methox 77.2 2.9 6.2E-05 42.5 4.3 33 20-53 2-34 (374)
433 PRK12861 malic enzyme; Reviewe 77.2 2.2 4.8E-05 47.4 3.5 40 15-54 185-226 (764)
434 PRK12828 short chain dehydroge 77.2 2.9 6.3E-05 38.9 4.0 35 16-51 4-39 (239)
435 PRK07232 bifunctional malic en 77.1 2.5 5.5E-05 47.0 4.0 39 15-53 181-221 (752)
436 PLN02968 Probable N-acetyl-gam 77.1 8.4 0.00018 39.5 7.5 33 18-50 37-70 (381)
437 PRK07045 putative monooxygenas 77.0 3.1 6.8E-05 42.4 4.5 34 19-53 5-38 (388)
438 PRK12829 short chain dehydroge 77.0 3.5 7.7E-05 39.1 4.6 36 14-50 6-42 (264)
439 PRK08226 short chain dehydroge 77.0 2.2 4.7E-05 40.7 3.2 34 16-50 3-37 (263)
440 PRK05732 2-octaprenyl-6-methox 77.0 2.6 5.6E-05 42.9 3.9 34 18-52 2-38 (395)
441 PF02571 CbiJ: Precorrin-6x re 77.0 20 0.00044 34.4 9.7 93 20-141 1-98 (249)
442 PRK12770 putative glutamate sy 76.9 3.3 7.1E-05 41.8 4.5 34 19-52 172-205 (352)
443 PRK07067 sorbitol dehydrogenas 76.9 3 6.6E-05 39.6 4.1 33 17-50 4-37 (257)
444 TIGR03589 PseB UDP-N-acetylglu 76.7 3.3 7.2E-05 41.2 4.5 36 17-52 2-39 (324)
445 PRK08703 short chain dehydroge 76.5 2.5 5.5E-05 39.6 3.4 34 16-50 3-37 (239)
446 PRK06823 ornithine cyclodeamin 76.5 8.1 0.00017 38.5 7.1 74 19-121 128-202 (315)
447 PF13454 NAD_binding_9: FAD-NA 76.5 3.1 6.6E-05 36.8 3.7 32 23-54 1-36 (156)
448 PRK04207 glyceraldehyde-3-phos 76.5 14 0.0003 37.4 8.8 36 108-144 75-110 (341)
449 PLN02896 cinnamyl-alcohol dehy 76.5 22 0.00047 35.6 10.4 33 18-51 9-42 (353)
450 PLN00093 geranylgeranyl diphos 76.4 3.2 7E-05 43.5 4.5 32 20-52 40-71 (450)
451 PRK08020 ubiF 2-octaprenyl-3-m 76.4 2.9 6.2E-05 42.6 4.0 33 20-53 6-38 (391)
452 KOG0409 Predicted dehydrogenas 76.3 7 0.00015 38.4 6.3 118 19-147 35-159 (327)
453 PRK12859 3-ketoacyl-(acyl-carr 76.3 2.4 5.3E-05 40.4 3.3 35 15-50 2-39 (256)
454 TIGR03366 HpnZ_proposed putati 76.2 18 0.00039 35.0 9.4 33 18-50 120-152 (280)
455 TIGR03466 HpnA hopanoid-associ 76.2 16 0.00035 35.7 9.3 31 21-52 2-33 (328)
456 PRK12823 benD 1,6-dihydroxycyc 76.1 3.5 7.7E-05 39.1 4.3 35 15-50 4-39 (260)
457 PRK06057 short chain dehydroge 76.0 3.5 7.6E-05 39.1 4.3 34 16-50 4-38 (255)
458 COG2072 TrkA Predicted flavopr 76.0 2.9 6.2E-05 43.8 3.9 32 17-49 173-204 (443)
459 TIGR01832 kduD 2-deoxy-D-gluco 75.9 3.6 7.8E-05 38.7 4.3 33 17-50 3-36 (248)
460 PRK07588 hypothetical protein; 75.9 3.7 7.9E-05 41.9 4.6 31 21-52 2-32 (391)
461 PLN03129 NADP-dependent malic 75.8 3.1 6.8E-05 44.5 4.1 39 15-53 317-366 (581)
462 TIGR03451 mycoS_dep_FDH mycoth 75.8 18 0.00038 36.4 9.6 33 19-51 177-209 (358)
463 PRK06500 short chain dehydroge 75.7 2.7 5.8E-05 39.5 3.4 34 16-50 3-37 (249)
464 PRK08605 D-lactate dehydrogena 75.7 3.2 7E-05 41.7 4.1 36 15-51 142-178 (332)
465 PRK08132 FAD-dependent oxidore 75.7 3.6 7.9E-05 44.2 4.7 35 18-53 22-56 (547)
466 TIGR01296 asd_B aspartate-semi 75.5 12 0.00026 37.7 8.1 28 21-48 1-29 (339)
467 TIGR00853 pts-lac PTS system, 75.4 16 0.00034 29.5 7.3 58 80-143 25-82 (95)
468 PF02056 Glyco_hydro_4: Family 75.4 6.5 0.00014 35.9 5.6 106 21-150 1-114 (183)
469 PRK00377 cbiT cobalt-precorrin 75.4 19 0.0004 33.1 8.8 79 18-119 40-119 (198)
470 PF08659 KR: KR domain; Inter 75.4 11 0.00024 34.0 7.2 30 21-50 2-32 (181)
471 PRK07774 short chain dehydroge 75.4 3.1 6.7E-05 39.2 3.7 34 16-50 3-37 (250)
472 PRK06567 putative bifunctional 75.4 3.8 8.3E-05 46.8 4.9 37 18-55 382-418 (1028)
473 PRK05786 fabG 3-ketoacyl-(acyl 75.4 3.7 8.1E-05 38.3 4.2 33 17-50 3-36 (238)
474 COG0345 ProC Pyrroline-5-carbo 75.3 16 0.00035 35.5 8.6 31 20-50 2-35 (266)
475 PLN02503 fatty acyl-CoA reduct 75.3 8.4 0.00018 42.0 7.3 41 10-50 110-153 (605)
476 PRK07333 2-octaprenyl-6-methox 75.2 3.2 6.9E-05 42.4 4.0 34 20-53 2-36 (403)
477 PRK11790 D-3-phosphoglycerate 75.2 3.5 7.6E-05 42.7 4.3 36 15-51 147-182 (409)
478 PRK11064 wecC UDP-N-acetyl-D-m 75.2 3.5 7.5E-05 42.8 4.2 34 19-53 3-36 (415)
479 PRK06996 hypothetical protein; 75.2 3.5 7.6E-05 42.3 4.3 35 19-53 11-48 (398)
480 PF02423 OCD_Mu_crystall: Orni 75.1 10 0.00023 37.7 7.5 74 19-121 128-202 (313)
481 PRK06183 mhpA 3-(3-hydroxyphen 75.1 3.9 8.4E-05 43.9 4.7 35 18-53 9-43 (538)
482 PRK07060 short chain dehydroge 75.0 4.1 9E-05 38.1 4.4 33 17-50 7-40 (245)
483 PRK13529 malate dehydrogenase; 74.9 3.4 7.3E-05 44.2 4.0 40 15-54 291-340 (563)
484 cd01336 MDH_cytoplasmic_cytoso 74.8 3.7 8.1E-05 41.1 4.2 32 20-51 3-41 (325)
485 PRK06949 short chain dehydroge 74.8 4.2 9E-05 38.5 4.4 33 17-50 7-40 (258)
486 PF07991 IlvN: Acetohydroxy ac 74.6 4.2 9.2E-05 36.3 4.0 32 17-49 2-33 (165)
487 PRK10157 putative oxidoreducta 74.6 3.8 8.3E-05 42.6 4.4 34 19-53 5-38 (428)
488 PLN02858 fructose-bisphosphate 74.5 4 8.7E-05 48.8 5.0 128 19-157 4-144 (1378)
489 PRK06701 short chain dehydroge 74.5 3.6 7.8E-05 40.2 4.0 36 14-50 41-77 (290)
490 KOG2774 NAD dependent epimeras 74.4 14 0.0003 35.1 7.5 136 18-179 43-182 (366)
491 PRK09754 phenylpropionate diox 74.4 6 0.00013 40.6 5.8 32 19-51 144-175 (396)
492 PTZ00317 NADP-dependent malic 74.3 4 8.7E-05 43.6 4.4 39 15-53 293-341 (559)
493 PRK08277 D-mannonate oxidoredu 74.3 4.3 9.3E-05 39.1 4.4 35 16-51 7-42 (278)
494 PRK04176 ribulose-1,5-biphosph 74.3 5.6 0.00012 38.4 5.2 36 16-52 22-57 (257)
495 smart00859 Semialdhyde_dh Semi 74.3 23 0.0005 29.5 8.4 30 21-50 1-32 (122)
496 PRK05876 short chain dehydroge 74.2 3.2 6.9E-05 40.2 3.5 33 17-50 4-37 (275)
497 PRK09072 short chain dehydroge 74.2 3.9 8.4E-05 39.0 4.1 34 17-51 3-37 (263)
498 PRK08294 phenol 2-monooxygenas 74.2 3.6 7.8E-05 45.2 4.3 34 18-52 31-65 (634)
499 PRK08243 4-hydroxybenzoate 3-m 74.1 4.3 9.4E-05 41.5 4.6 34 19-53 2-35 (392)
500 PRK06124 gluconate 5-dehydroge 74.0 4.3 9.2E-05 38.5 4.3 35 16-51 8-43 (256)
No 1
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-103 Score=764.52 Aligned_cols=450 Identities=56% Similarity=0.945 Sum_probs=434.2
Q ss_pred CcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHH
Q 012768 2 SMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAF 81 (456)
Q Consensus 2 y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~ 81 (456)
||||+|+||.+||..|..++||++|||++|||++||||++|||+||++|+..|+.+|++.|||+..+++|++||++.++.
T Consensus 10 YDRQlRlwge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~GksrA~a~~e~ 89 (523)
T KOG2016|consen 10 YDRQLRLWGEEGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSIGKSRAEATLEF 89 (523)
T ss_pred HHHHHHHHHHHhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHHHHHHHhhchhHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCCceeE
Q 012768 82 LQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVV 161 (456)
Q Consensus 82 l~~lnp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~~~~ 161 (456)
|+++||.|..+.+.++|+.+...+++++++|++|+++..+.....++.++||.+++|++.+.++|+.|++++.+.+|+++
T Consensus 90 LqeLN~~V~~~~vee~p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~~~vpll~~rs~Gl~G~iRI~ikEH~ii 169 (523)
T KOG2016|consen 90 LQELNPSVSGSFVEESPDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILREANVPLLLTRSYGLAGTIRISIKEHTII 169 (523)
T ss_pred HHHhChhhhcCccccChhhhhhcCchhhheeeeeeccccchhhhhhhHHHHHhcCCceEEEeeecceEEEEEEeeecccc
Confidence 99999999999999999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCcccCCCcHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhcc
Q 012768 162 ESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTREEKREFKELLKSKMV 241 (456)
Q Consensus 162 ~~~~~~~~~dlrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~~~g~~p~~~~~~~~f~~~~~~~~~ 241 (456)
++|||+..+||||++|||+|.+|++++|++.|++..|+|+||+|+++|++++|.+.|.|+.|++.+|+.+|++++..++.
T Consensus 170 eshPD~~~~DLRL~nPwpeLi~~v~s~dLd~m~~a~~shiPyivll~K~l~~w~~~~n~~~p~t~~ekk~fkd~i~~~~~ 249 (523)
T KOG2016|consen 170 ESHPDNPLDDLRLDNPWPELIEYVDSTDLDVMDPAAHSHIPYIVLLVKYLEKWAKQHNGNLPSTYDEKKEFKDLIRSEMG 249 (523)
T ss_pred ccCCCCcccccccCCCcHHHHHHHhhcCccccchhhhcCCCcHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCCCCCHHHHHHHHhhccCCCCccHHHHHHHh--------cCCCCchHHHHHhhh-------------------------
Q 012768 242 AIDEDNYKEAIEASFKVFAPPGIKLALSKVLQ--------SADSSFFPFSIAIGR------------------------- 288 (456)
Q Consensus 242 ~~~~~nf~EA~~~~~~~~~~~~i~~~~~~~~~--------~~~~~fw~l~~~l~~------------------------- 288 (456)
..|++||+||+++++++|.++.||++++++++ .++..||++++|||.
T Consensus 250 ~~DeeNyeEA~~a~~~Af~~~~i~ssv~dil~d~~c~~~~~~s~~FWim~~aLk~Fv~~e~~g~lPL~GtlPDM~ssTe~ 329 (523)
T KOG2016|consen 250 KADEENYEEAIKAVNKAFAPTQIPSSVKDILHDDRCAQIGKDSSDFWIMAAALKEFVLKEEGGFLPLRGTLPDMTSSTEH 329 (523)
T ss_pred CCccccHHHHHHHHHHHhcccCCchhHHHHhcChHHHHhcCCCcHHHHHHHHHHHHHcccCCCccCCCCCCCccccCHHH
Confidence 99999999999999999999999999999997 346789999999997
Q ss_pred ------hH-HHHHhhHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcccceEeeccccccccCCCChhhHhhhhcccc
Q 012768 289 ------PW-IFAEADCLAIEQRVRNNLKKLGREPESISKATIKSFCRNARKLKVCRYRLLEDEFSNPSVPDIQKYLTDED 361 (456)
Q Consensus 289 ------iY-~ka~~D~~~~~~~~~~~l~~~g~~~~~i~~~~i~~f~~n~~~~~~i~~~sl~~~~~~p~~~~~~~~~~d~~ 361 (456)
+| .||+.|..+|..+++++++++|+++++|++..++.||+|+..+++++|+++++++. |+..+..++.++++
T Consensus 330 YI~Lq~iY~eKA~~D~~~v~~~v~~vlk~lgr~~~sIs~~~ik~fCkna~~lkv~r~~~~~eey~-~s~~~~~~~~~~e~ 408 (523)
T KOG2016|consen 330 YIRLQKIYHEKAEADALEVERRVQEVLKSLGRSPDSISDDVIKLFCKNAAKLKVCRGRTLAEEYE-KSITELIKYSSNEN 408 (523)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCccccCHHHHHHHHhhhhcceeeecchhhhhhc-ccchhhhhhccccc
Confidence 99 99999999999999999999999999999999999999999999999999999999 76666667777777
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhCCCcchhHHHHH
Q 012768 362 YSVAMGFYILLRAVDRFAANYNNYPGEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAAFI 441 (456)
Q Consensus 362 ~~~~~~~~~~~~al~~F~~~~gr~P~~~~~~~~~D~~~l~~~~~~i~~~~~~~~~~i~e~~v~e~~r~~~~~l~~vaa~~ 441 (456)
++..+.||+++||+++|..++|+||| +.+.+.|+..++.++..+++++++++..+.++.+.||||++++|+|.|+||+
T Consensus 409 ~~~~~~~~~~lRavdrfl~~~gk~pG--~~~v~~D~~~lks~a~~~lse~g~~~~~v~d~~i~E~cR~gaaElH~VsAfi 486 (523)
T KOG2016|consen 409 YSNEIGFYLLLRAVDRFLKEKGKYPG--EGPVEIDITKLKSIAASLLSELGLDGNAVTDDAIHEICRFGAAELHVVSAFI 486 (523)
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCC--CCccchhhHHHHHHHHHHHHHhccCcccCcHHHHHHHHhcCCchhHHHHHHH
Confidence 76788999999999999999999999 4677899999999999999999998888999999999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 012768 442 GGVASQEVIKVVF 454 (456)
Q Consensus 442 GGiaaQEvIK~i~ 454 (456)
||+||||+||+||
T Consensus 487 GGiaaQEvIKLiT 499 (523)
T KOG2016|consen 487 GGIAAQEVIKLIT 499 (523)
T ss_pred hhHHHHHHHHHHH
Confidence 9999999999997
No 2
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=100.00 E-value=4.2e-87 Score=679.49 Aligned_cols=339 Identities=51% Similarity=0.839 Sum_probs=323.4
Q ss_pred CcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHH
Q 012768 2 SMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAF 81 (456)
Q Consensus 2 y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~ 81 (456)
||||+||||.+||++|++++|||+|+||+|+|++|||+|+|||+|||+|++.|+.+||++|||++.+|+|++||++++++
T Consensus 3 YDRQlrLwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~ 82 (425)
T cd01493 3 YDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCEL 82 (425)
T ss_pred chHHHHHhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCCceeE
Q 012768 82 LQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVV 161 (456)
Q Consensus 82 l~~lnp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~~~~ 161 (456)
|+++||+|+++++.+.+..+...++++|++||+||+|.++...+..++++|+++++|+|++++.|++|++++++++|+++
T Consensus 83 L~eLNp~V~i~~~~e~~~~ll~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~iPlI~~~s~G~~G~v~v~~~~h~i~ 162 (425)
T cd01493 83 LQELNPDVNGSAVEESPEALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWSANIPLLYVRSYGLYGYIRIQLKEHTIV 162 (425)
T ss_pred HHHHCCCCEEEEEecccchhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEecccCEEEEEEEECCeEEE
Confidence 99999999999988777655544578899999999999998888899999999999999999999999999999999999
Q ss_pred ecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCcccCCCcHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhcc
Q 012768 162 ESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTREEKREFKELLKSKMV 241 (456)
Q Consensus 162 ~~~~~~~~~dlrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~~~g~~p~~~~~~~~f~~~~~~~~~ 241 (456)
++||++..+||||++|||||.+|++++|++.+++..|+|+||+++|++++++|+..|+|.+|+++++|.+|++++.++++
T Consensus 163 et~p~~~~~DLRL~~P~peL~~~~~~~dl~~ld~~~h~hvPy~viL~~~l~~w~~~~~g~~p~~~~ek~~f~~~i~~~~~ 242 (425)
T cd01493 163 ESHPDNALEDLRLDNPFPELREHADSIDLDDMDPAEHSHTPYIVILIKYLEKWRSAHNGQLPSTYKEKKEFRDLVRSLMR 242 (425)
T ss_pred ECCCCCCCcCcccCCCcHHHHHHHHhcCCccCChhhcCCCCHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 99999989999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred -CCCCCCHHHHHHHHhhccCCCCccHHHHHHHh--------cCCCCchHHHHHhhh------------------------
Q 012768 242 -AIDEDNYKEAIEASFKVFAPPGIKLALSKVLQ--------SADSSFFPFSIAIGR------------------------ 288 (456)
Q Consensus 242 -~~~~~nf~EA~~~~~~~~~~~~i~~~~~~~~~--------~~~~~fw~l~~~l~~------------------------ 288 (456)
..+++||+||+++++++++|+.||++++++|+ ..++.||++++|||.
T Consensus 243 ~~~~eeNf~EA~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~fwi~~~alk~F~~~~~g~lPl~G~lPDM~s~t~~ 322 (425)
T cd01493 243 SNEDEENFEEAIKAVNKALNRTKIPSSVEEIFNDDRCENLTSQSSSFWIMARALKEFVAEENGLLPLPGTLPDMTADTEK 322 (425)
T ss_pred cCCCccchHHHHHHHHHhhCCCCCcHHHHHHHhchhcccCCCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCCCccCHHH
Confidence 58899999999999999999999999999996 235779999999998
Q ss_pred ------hH-HHHHhhHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcccceEeeccc
Q 012768 289 ------PW-IFAEADCLAIEQRVRNNLKKLGREPESISKATIKSFCRNARKLKVCRYRL 340 (456)
Q Consensus 289 ------iY-~ka~~D~~~~~~~~~~~l~~~g~~~~~i~~~~i~~f~~n~~~~~~i~~~s 340 (456)
+| +||.+|+++|.++++++++++|++.++|++..++.||||++.++++++++
T Consensus 323 Yi~Lq~iY~~ka~~D~~~v~~~v~~~~~~~g~~~~~I~~~~i~~FCkna~~l~~i~~~~ 381 (425)
T cd01493 323 YIKLQNIYREKAEKDAAEVEKYVREILKSLGRSPDSISDKEIKLFCKNAAFLRVIRGRS 381 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhhHHhhhcccCCc
Confidence 88 99999999999999999999999999999999999999999999997754
No 3
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-60 Score=493.39 Aligned_cols=357 Identities=23% Similarity=0.374 Sum_probs=290.3
Q ss_pred CCcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHH
Q 012768 1 MSMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCA 80 (456)
Q Consensus 1 ~y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~ 80 (456)
+||||+++.|.++|+||..++|||.|++|+|.||||||+|+||+++||.|...+..+||+.||+++++|||++||++...
T Consensus 19 LYSRQLYVlG~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~E~DigknRA~as~~ 98 (1013)
T KOG2012|consen 19 LYSRQLYVLGHEAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLSEEDIGKNRAEASVE 98 (1013)
T ss_pred hhhhhhhhccHHHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeeeHHhcCCchHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCCcee
Q 012768 81 FLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTV 160 (456)
Q Consensus 81 ~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~~~ 160 (456)
+|++||++|.|.+++.. .+.+++++|++||.|+.+.....+|+++||+++|.||.+.+.|++|++|+|||++++
T Consensus 99 ~LaeLN~yV~V~v~t~~------~~~e~L~~FqvVVlt~~~le~q~~i~~fch~~~i~fi~ad~RGLfg~lFCDFG~eF~ 172 (1013)
T KOG2012|consen 99 KLAELNNYVPVVVLTGP------LTEEFLSDFQVVVLTDASLEEQLKINDFCHSHGIAFIAADTRGLFGQLFCDFGEEFT 172 (1013)
T ss_pred HHHHhhcceeeEEecCc------ccHHHHhCCcEEEEecCchHHHHHHHHHHHhcCeEEEEeccchhhhhhhccCCCceE
Confidence 99999999999987653 246789999999999999999999999999999999999999999999999999776
Q ss_pred EecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCcccCCCcHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhc
Q 012768 161 VESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTREEKREFKELLKSKM 240 (456)
Q Consensus 161 ~~~~~~~~~~dlrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~~~g~~p~~~~~~~~f~~~~~~~~ 240 (456)
+...... . | +..++.+|+-+ .|++|.++.-. -+...+|++++ |.++ +||
T Consensus 173 v~D~tGe---e-----P---~t~mI~~Is~d---------~pGvvT~ld~~--rH~lEdGd~V~-------FsEv--eGm 221 (1013)
T KOG2012|consen 173 VLDPTGE---E-----P---LTGMIASISQD---------NPGVVTCLDGA--RHGFEDGDLVT-------FSEV--EGM 221 (1013)
T ss_pred EeCCCCC---c-----c---hhhHHhhccCC---------CCceEEEecCc--cccCccCCEEE-------EEee--ccc
Confidence 5311110 0 1 12344444322 22222211100 11233454443 4455 788
Q ss_pred cCCCCCCHHHHHHHHhhccCCCCccHHHHHHHhcCCCCchHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhhCCCCCCCCH
Q 012768 241 VAIDEDNYKEAIEASFKVFAPPGIKLALSKVLQSADSSFFPFSIAIGRPWIFAEADCLAIEQRVRNNLKKLGREPESISK 320 (456)
Q Consensus 241 ~~~~~~nf~EA~~~~~~~~~~~~i~~~~~~~~~~~~~~fw~l~~~l~~iY~ka~~D~~~~~~~~~~~l~~~g~~~~~i~~ 320 (456)
.++|+.. +.++. ++++|++.+.|+. ++.+
T Consensus 222 ~eLN~~~-------P~kI~--------------------------v~~p~sf~Igdt~------------------~f~~ 250 (1013)
T KOG2012|consen 222 TELNDCK-------PRKIT--------------------------VLGPYSFSIGDTT------------------EFGE 250 (1013)
T ss_pred cccCCCC-------ceEEE--------------------------EecCceEEecccc------------------chhh
Confidence 8887642 23322 2334555555544 3445
Q ss_pred HHHHHHHHhcccceEeeccccccccCCCChhhHhhhhccc-cchhHHHHHHHHHHHHHHHHHcCCCCCCCCCCchhhHHH
Q 012768 321 ATIKSFCRNARKLKVCRYRLLEDEFSNPSVPDIQKYLTDE-DYSVAMGFYILLRAVDRFAANYNNYPGEFDGPMDEDISR 399 (456)
Q Consensus 321 ~~i~~f~~n~~~~~~i~~~sl~~~~~~p~~~~~~~~~~d~-~~~~~~~~~~~~~al~~F~~~~gr~P~~~~~~~~~D~~~ 399 (456)
|..+|.++++|.|+.++|+||++.+.+|. + ...|+ +++++..+|++|+||++|.++|||.|.+++ +.|+++
T Consensus 251 y~~GGi~tQVK~Pk~isfKsL~~~L~~P~---f--l~~df~k~~rp~~lH~af~AL~~F~~~~Gr~P~p~~---e~DA~~ 322 (1013)
T KOG2012|consen 251 YKKGGIFTQVKVPKTISFKSLREALKEPE---F--LISDFAKFDRPPQLHLAFQALHQFQEAHGRLPRPGN---EEDAEE 322 (1013)
T ss_pred hhcCceeEEeecCceEecccHHHhhcCCC---e--eeeccccccccHHHHHHHHHHHHHHHHhCCCCCCCC---hhhHHH
Confidence 55567899999999999999999999994 2 35576 678999999999999999999999999876 589999
Q ss_pred HHHHHHHHHhhcCCCCCCchHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhc
Q 012768 400 LKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAAFIGGVASQEVIKVVF 454 (456)
Q Consensus 400 l~~~~~~i~~~~~~~~~~i~e~~v~e~~r~~~~~l~~vaa~~GGiaaQEvIK~i~ 454 (456)
|.+++.++.+..+ ....++|++|++++..+.|.|.||+|++||+|||||+|+++
T Consensus 323 l~~l~~~i~~~~~-~~~~vde~Lir~~s~~a~g~L~pm~A~~GG~vaQEvlKa~s 376 (1013)
T KOG2012|consen 323 LVELARDISEGLG-LEEDVDEKLIRHFSFSARGDLNPMVAFFGGIVAQEVLKACS 376 (1013)
T ss_pred HHHHHHHhhhhcc-ccccchHHHHHHHHHhhccCcchHHHHHhhhhHHHHHHhhc
Confidence 9999999988766 34578999999999999999999999999999999999986
No 4
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=9.5e-57 Score=496.76 Aligned_cols=354 Identities=24% Similarity=0.352 Sum_probs=284.0
Q ss_pred CCcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHH
Q 012768 1 MSMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCA 80 (456)
Q Consensus 1 ~y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~ 80 (456)
+||||+|+||.++|++|++++|||+||||+|+|+||||+++|||+|||+|+|.|+.+||+||||++++|||++||+++++
T Consensus 6 lYsRQi~l~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~ 85 (1008)
T TIGR01408 6 LYSRQLYVLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVK 85 (1008)
T ss_pred hhhhHHHhcCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcC--CeEEEEeeccceeeEEeeeCCc
Q 012768 81 FLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREAN--VMLIFARSYGLTGFVRISVKEH 158 (456)
Q Consensus 81 ~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~--ip~i~~~~~G~~G~v~~~~~~~ 158 (456)
+|+++||+|+|++.+.. + +.+++++||+||+|.++...+..+|++||+++ +|||++++.|++|++|+|+++|
T Consensus 86 ~L~eLNp~V~V~~~~~~---l---~~e~l~~fdvVV~t~~~~~~~~~in~~cr~~~~~I~fI~~~~~G~~G~vf~D~g~~ 159 (1008)
T TIGR01408 86 KLAELNPYVHVSSSSVP---F---NEEFLDKFQCVVLTEMSLPLQKEINDFCHSQCPPIAFISADVRGLFGSLFCDFGDE 159 (1008)
T ss_pred HHHHHCCCceEEEeccc---C---CHHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCCeEEEEEeecceEEEEEecCCCc
Confidence 99999999999987643 2 34578999999999999999999999999999 9999999999999999999995
Q ss_pred -eeEecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCcccCCCcHHHHHHHHHHHH-HHhcCCCCCCCHHHHHHHHHHH
Q 012768 159 -TVVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEW-TNSHGGSLPSTREEKREFKELL 236 (456)
Q Consensus 159 -~~~~~~~~~~~~dlrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~-~~~~~g~~p~~~~~~~~f~~~~ 236 (456)
.+++..++... + ..+.++.- ..|++| .++++- +...+|+ ...|+++
T Consensus 160 f~~~d~~ge~p~---------~---~~i~~i~~---------~~~g~V---t~~~~~~h~l~~gd-------~V~f~ev- 207 (1008)
T TIGR01408 160 FEVLDTDGEEPK---------T---GFIASITQ---------ANPGIV---TCLENHRHKLETGD-------FVTFREV- 207 (1008)
T ss_pred eEEEeCCCCCCC---------c---cccccccc---------CCCceE---EeecCcccCCcCCC-------EEEEeec-
Confidence 56665433211 1 11111110 011222 111110 0112333 2356666
Q ss_pred HhhccCCCCCCHHHHHHHHhhc--cCCCCccHHHHHHHhcCCCCchHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhhCCC
Q 012768 237 KSKMVAIDEDNYKEAIEASFKV--FAPPGIKLALSKVLQSADSSFFPFSIAIGRPWIFAEADCLAIEQRVRNNLKKLGRE 314 (456)
Q Consensus 237 ~~~~~~~~~~nf~EA~~~~~~~--~~~~~i~~~~~~~~~~~~~~fw~l~~~l~~iY~ka~~D~~~~~~~~~~~l~~~g~~ 314 (456)
+||.++|+.. ++++ ..|. .|- +| +
T Consensus 208 -~gm~~lN~~~-------~~~i~~~~~~---------------~f~------------------------------i~-d 233 (1008)
T TIGR01408 208 -NGMTGLNDGS-------PRKITVISPY---------------SFS------------------------------IG-D 233 (1008)
T ss_pred -ccccccCCCC-------ceeEEecCCc---------------eEE------------------------------ec-c
Confidence 7888887642 1222 1111 111 11 2
Q ss_pred CCCCCHHHHHHHHHhcccceEeeccccccccCCCChhhHhhhhccc-cchhHHHHHHHHHHHHHHHHHcCCCCCCCCCCc
Q 012768 315 PESISKATIKSFCRNARKLKVCRYRLLEDEFSNPSVPDIQKYLTDE-DYSVAMGFYILLRAVDRFAANYNNYPGEFDGPM 393 (456)
Q Consensus 315 ~~~i~~~~i~~f~~n~~~~~~i~~~sl~~~~~~p~~~~~~~~~~d~-~~~~~~~~~~~~~al~~F~~~~gr~P~~~~~~~ 393 (456)
+..+++|..+|+++++|.++.++|+||++.+.+|.. .++|+ +++++..+|++|+|+.+|.++|||+|.+++
T Consensus 234 t~~~~~y~~gG~~~qvK~p~~~~Fksl~~~l~~p~~-----~~~d~~k~~r~~~lh~~~~aL~~f~~~~g~~P~~~~--- 305 (1008)
T TIGR01408 234 TTELGPYLHGGIATQVKTPKTVFFKSLREQLKDPKC-----LIVDFSKPERPPEIHTAFQALDQFQEKYSRKPNVGC--- 305 (1008)
T ss_pred ccccchhhcCceEEEEeccccccccCHHHHHcCCcc-----cccchhhcCCchhHHHHHHHHHHHHHHcCCCCCCCC---
Confidence 344667777899999999999999999999999832 34565 466788899999999999999999999754
Q ss_pred hhhHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhc
Q 012768 394 DEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAAFIGGVASQEVIKVVF 454 (456)
Q Consensus 394 ~~D~~~l~~~~~~i~~~~~~~~~~i~e~~v~e~~r~~~~~l~~vaa~~GGiaaQEvIK~i~ 454 (456)
++|++++.++++++.++.+...+.+++++++.+++++.++++||||++||++||||||+++
T Consensus 306 ~~d~~~~~~~a~~i~~~~~~~~~~lde~li~~~~~~~~geisPv~Ai~GGi~aQEViKais 366 (1008)
T TIGR01408 306 QQDAEELLKLATSISETLEEKVPDVDAKLVHWLSWTAQGFLSPMAAAVGGVVSQEVLKAVT 366 (1008)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHhccccccHHHHHhchHHHHHHHHHhc
Confidence 6899999999999998877666679999999999999999999999999999999999986
No 5
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-50 Score=378.59 Aligned_cols=291 Identities=29% Similarity=0.468 Sum_probs=232.1
Q ss_pred CCcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHH
Q 012768 1 MSMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCA 80 (456)
Q Consensus 1 ~y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~ 80 (456)
+|||||||||.++|++|+++||||+|.+|+|+|++|||+|+||+++|++|+..|++.|++.|||+..+++|++||++..+
T Consensus 13 lYDRQIRLWG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFli~~~~vg~~raeas~e 92 (331)
T KOG2014|consen 13 LYDRQIRLWGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFLISASSVGQTRAEASLE 92 (331)
T ss_pred HHHHHHHHccHHHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCceeEEchhhhchHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCCcee
Q 012768 81 FLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTV 160 (456)
Q Consensus 81 ~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~~~ 160 (456)
+++.+||.|++.+..+ ++.+.+.+||.+||+||.+..+.+.+..+|++||+++++|+.++++|++||.|+++.+|.+
T Consensus 93 rl~~LNPmV~v~~d~e---dl~ek~eeff~qFdlVV~~~~s~e~~~kvn~icrk~~i~F~a~d~~g~~Gy~F~dL~~h~y 169 (331)
T KOG2014|consen 93 RLQDLNPMVDVSVDKE---DLSEKDEEFFTQFDLVVATDQSREEKCKVNEICRKLNIAFYAGDCFGLCGYAFADLQEHKY 169 (331)
T ss_pred HHHhcCCceEEEechh---hhhhcchhhhhceeEEEEeccchhhhhhHHHHHHhcCceEEeccccceeeeeeeehhhhhh
Confidence 9999999999988665 4566678999999999999999999999999999999999999999999999999999987
Q ss_pred EecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCcccCCCcHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhc
Q 012768 161 VESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTREEKREFKELLKSKM 240 (456)
Q Consensus 161 ~~~~~~~~~~dlrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~~~g~~p~~~~~~~~f~~~~~~~~ 240 (456)
.+.+.... -|+..+ .
T Consensus 170 ~~~~~~~~-----------------------------------------------------~~~~~k------------~ 184 (331)
T KOG2014|consen 170 LEEKTKVA-----------------------------------------------------KVSQTK------------R 184 (331)
T ss_pred hhhccccc-----------------------------------------------------cccccc------------c
Confidence 64321110 000000 0
Q ss_pred cCCCCCCHHHHHHHHhhccCCCCccHHHHHHHhcCCCCchHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhhCCCCCCCCH
Q 012768 241 VAIDEDNYKEAIEASFKVFAPPGIKLALSKVLQSADSSFFPFSIAIGRPWIFAEADCLAIEQRVRNNLKKLGREPESISK 320 (456)
Q Consensus 241 ~~~~~~nf~EA~~~~~~~~~~~~i~~~~~~~~~~~~~~fw~l~~~l~~iY~ka~~D~~~~~~~~~~~l~~~g~~~~~i~~ 320 (456)
...++.. .-
T Consensus 185 ~k~~~~~------------------------------~~----------------------------------------- 193 (331)
T KOG2014|consen 185 AKVDETE------------------------------TE----------------------------------------- 193 (331)
T ss_pred eeeeecc------------------------------ce-----------------------------------------
Confidence 0000000 00
Q ss_pred HHHHHHHHhcccceEeeccccccccCCCCh-hhHhhhhccccchhHHHHHHHHHHHHHHHHHcCCCCCCCCCCchhhHHH
Q 012768 321 ATIKSFCRNARKLKVCRYRLLEDEFSNPSV-PDIQKYLTDEDYSVAMGFYILLRAVDRFAANYNNYPGEFDGPMDEDISR 399 (456)
Q Consensus 321 ~~i~~f~~n~~~~~~i~~~sl~~~~~~p~~-~~~~~~~~d~~~~~~~~~~~~~~al~~F~~~~gr~P~~~~~~~~~D~~~ 399 (456)
..-+.+.|+|+++.++.+.. ++.. ...+....|.+++++..|.+.+||.|| +-..+|.+.
T Consensus 194 ----------~vk~~~~~~~~~Eal~~~~~~k~k~------~~rr~~~~~~ll~v~l~f~~s~~r~pg---~~~~~d~er 254 (331)
T KOG2014|consen 194 ----------WVKRKVVFPSVKEALSVDWTKKEKR------KPRRTKKLYFLLPVLLKFRTSEGRDPG---ETSEEDLER 254 (331)
T ss_pred ----------ehhhhhcccCHHHHHhcccchhhhh------hhhccCcceehHHHHHHHHHhcCCCCc---cccHHHHHH
Confidence 01111234444444443321 1100 113345678899999999999999999 244789999
Q ss_pred HHHHHHHHHhhcCCCCCCchHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhc
Q 012768 400 LKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAAFIGGVASQEVIKVVF 454 (456)
Q Consensus 400 l~~~~~~i~~~~~~~~~~i~e~~v~e~~r~~~~~l~~vaa~~GGiaaQEvIK~i~ 454 (456)
+..|.++++... .-+++.+. +|..+.+.|++|+||++|||+||||||+|+
T Consensus 255 l~~I~~ell~s~----~i~pd~~~-~f~~~~~~ef~Pv~AvVGGivaQevIk~is 304 (331)
T KOG2014|consen 255 LLQIRNELLESE----TIIPDELL-EFLSLIFTEFAPVCAVVGGILAQEVIKAIS 304 (331)
T ss_pred HHHHHHhhcccc----ccCCchHH-HHHHhcccccCchhhhhhhHhHHHHHHHhh
Confidence 999999888632 23455666 899999999999999999999999999986
No 6
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=100.00 E-value=1.4e-48 Score=377.38 Aligned_cols=156 Identities=28% Similarity=0.385 Sum_probs=147.8
Q ss_pred CCcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHH
Q 012768 1 MSMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCA 80 (456)
Q Consensus 1 ~y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~ 80 (456)
+||||+++||.++|+||++++|+|+|+||+|+|+||||+++||++|||+|+|.++.+||+|||+++++|+|++||+++++
T Consensus 1 lYsRQl~~~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~ 80 (286)
T cd01491 1 LYSRQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQA 80 (286)
T ss_pred CcccceeccCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCCcee
Q 012768 81 FLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTV 160 (456)
Q Consensus 81 ~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~~~ 160 (456)
+|+++||+|++++.+.. + +.+++.+||+||+|+++...+..+|++|+++++|||.+++.|++|++|+|+++|+.
T Consensus 81 ~L~eLNp~V~V~~~~~~---~---~~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~~~G~~G~vf~dfg~~f~ 154 (286)
T cd01491 81 RLAELNPYVPVTVSTGP---L---TTDELLKFQVVVLTDASLEDQLKINEFCHSPGIKFISADTRGLFGSIFCDFGDEFT 154 (286)
T ss_pred HHHHHCCCCEEEEEecc---C---CHHHHhcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEeccccEEEEEecCCCeEE
Confidence 99999999999987653 1 34678899999999999999999999999999999999999999999999999776
Q ss_pred Ee
Q 012768 161 VE 162 (456)
Q Consensus 161 ~~ 162 (456)
+-
T Consensus 155 ~~ 156 (286)
T cd01491 155 VY 156 (286)
T ss_pred Ee
Confidence 54
No 7
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=100.00 E-value=1.1e-38 Score=295.39 Aligned_cols=152 Identities=34% Similarity=0.558 Sum_probs=142.8
Q ss_pred CCcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHH
Q 012768 1 MSMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCA 80 (456)
Q Consensus 1 ~y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~ 80 (456)
.||||+|+||.++|++|++++|+|+|+||+|+|++|||+++||++|+|+|+|.|+.+|++|||+++.+|+|++||+++++
T Consensus 3 ~Y~Rqi~l~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~ 82 (197)
T cd01492 3 LYDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLE 82 (197)
T ss_pred hhhHHHHHhCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeee
Q 012768 81 FLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISV 155 (456)
Q Consensus 81 ~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~ 155 (456)
+|+++||+++++...... .+.+.+++++||+||+|.++...+..++++|+++++|+|++++.|++|++++++
T Consensus 83 ~L~~lNp~v~i~~~~~~~---~~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~~d~ 154 (197)
T cd01492 83 RLRALNPRVKVSVDTDDI---SEKPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATGVHGLFGFVFADL 154 (197)
T ss_pred HHHHHCCCCEEEEEecCc---cccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecCCEEEEEEec
Confidence 999999999999876543 233456789999999999998999999999999999999999999999999875
No 8
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=100.00 E-value=2.2e-38 Score=293.77 Aligned_cols=155 Identities=37% Similarity=0.606 Sum_probs=143.6
Q ss_pred CCcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccc--cccCcchHHHH
Q 012768 1 MSMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDE--SCVGESKAKSV 78 (456)
Q Consensus 1 ~y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~--~dvG~~Ka~~~ 78 (456)
.||||+|+||.++|++|++++|+|+|+||+|+|++|||+++||++|+|+|+|.++.+|++|||++++ +|+|++||+++
T Consensus 1 ~y~Rqi~l~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~ 80 (198)
T cd01485 1 LYDRQIRLWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAAS 80 (198)
T ss_pred CccceeeccCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHH
Confidence 4999999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred HHHHHHhCCCCEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeee
Q 012768 79 CAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISV 155 (456)
Q Consensus 79 ~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~ 155 (456)
+++|+++||+++++++........+...+++++||+||+|.++...+..+|++|+++++|+|.+++.|++|++++++
T Consensus 81 ~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~~~~ 157 (198)
T cd01485 81 YEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCATYGLIGYAFFDF 157 (198)
T ss_pred HHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEEch
Confidence 99999999999999887654322223356789999999999998899999999999999999999999999999875
No 9
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=100.00 E-value=3.9e-36 Score=279.86 Aligned_cols=195 Identities=20% Similarity=0.269 Sum_probs=159.8
Q ss_pred Ccccccc--cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHH
Q 012768 2 SMSTLRI--WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVC 79 (456)
Q Consensus 2 y~RQlrl--wG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~ 79 (456)
||||+++ ||.++|++|++++|+|+|+||+|++++++|+++||++++++|+|.|+++||+|||+++++|+|++||++++
T Consensus 2 Y~Rqi~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~ 81 (202)
T TIGR02356 2 YARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAA 81 (202)
T ss_pred CcceecchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHH
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCEEEEEecChhhhhcCC-cCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCCc
Q 012768 80 AFLQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEH 158 (456)
Q Consensus 80 ~~l~~lnp~v~v~~~~~~~~~~~~~~-~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~ 158 (456)
++|+++||+++++.+..... +.+ .++++++|+||+|.++.+.+..++++|+++++|+|++++.|++|++++..++.
T Consensus 82 ~~l~~~np~v~i~~~~~~i~---~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~~g~~G~~~~~~p~~ 158 (202)
T TIGR02356 82 QRLRELNSDIQVTALKERVT---AENLELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAAVVGFGGQLMVFDPGG 158 (202)
T ss_pred HHHHHhCCCCEEEEehhcCC---HHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCeEEEEEEeCCC
Confidence 99999999999988765432 112 35688999999999999999999999999999999999999999999876531
Q ss_pred eeEecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCcccCCCcHHHHHHHHHHHH
Q 012768 159 TVVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEW 214 (456)
Q Consensus 159 ~~~~~~~~~~~~dlrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~ 214 (456)
...|+.|-||+..+...++ ......+.+|.++..+.+.+..
T Consensus 159 -----------~~~c~~c~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~a~e~~ 199 (202)
T TIGR02356 159 -----------EGPCLRCLFPDIADTGPSC----ATAGVIGPVVGVIGSLQALEAL 199 (202)
T ss_pred -----------CCCChhhcCCCCcccCCCC----ccCCccchHHHHHHHHHHHHHH
Confidence 1236666666521111111 1112344555566666665543
No 10
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=100.00 E-value=1.4e-35 Score=283.82 Aligned_cols=198 Identities=17% Similarity=0.203 Sum_probs=163.2
Q ss_pred Ccccccc--cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHH
Q 012768 2 SMSTLRI--WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVC 79 (456)
Q Consensus 2 y~RQlrl--wG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~ 79 (456)
|+||+++ ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++++|+|++||++++
T Consensus 13 Y~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~ 92 (245)
T PRK05690 13 YNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESAR 92 (245)
T ss_pred HHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHH
Confidence 8999988 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCEEEEEecChhhhhcCC-cCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCCc
Q 012768 80 AFLQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEH 158 (456)
Q Consensus 80 ~~l~~lnp~v~v~~~~~~~~~~~~~~-~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~ 158 (456)
++|+++||+++++.+.... .+.+ .++++++|+||+|.++...+..++++|+++++|+|++++.|+.|++.+..++.
T Consensus 93 ~~l~~lnp~v~i~~~~~~i---~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~v~~~~~~~ 169 (245)
T PRK05690 93 AALARINPHIAIETINARL---DDDELAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVSGAAIRMEGQVTVFTYQD 169 (245)
T ss_pred HHHHHHCCCCEEEEEeccC---CHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEeeeccCCceEEEEecCC
Confidence 9999999999999876543 2222 45788999999999999999999999999999999999999999998876431
Q ss_pred eeEecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCcccCCCcHHHHHHHHHHHHHHh
Q 012768 159 TVVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNS 217 (456)
Q Consensus 159 ~~~~~~~~~~~~dlrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~ 217 (456)
. ..|+.|.+|+..+- . .+......++.++.++..+.+.+..|-.
T Consensus 170 ~-----------~~c~~c~~~~~~~~--~--~~~~~~gv~~~~~~~~~~~~a~e~ik~l 213 (245)
T PRK05690 170 D-----------EPCYRCLSRLFGEN--A--LTCVEAGVMAPLVGVIGSLQAMEAIKLL 213 (245)
T ss_pred C-----------CceeeeccCCCCCC--C--CCcccCCccchHHHHHHHHHHHHHHHHH
Confidence 0 12444545533211 0 0111223456677778777777766643
No 11
>PRK08223 hypothetical protein; Validated
Probab=100.00 E-value=3.5e-35 Score=282.54 Aligned_cols=153 Identities=17% Similarity=0.168 Sum_probs=142.7
Q ss_pred CcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHH
Q 012768 2 SMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAF 81 (456)
Q Consensus 2 y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~ 81 (456)
|+||+.++|.++|++|++++|+|+||||+|++++++|+++|||+|+|+|+|.|+.+||+||++++.+|+|++||++++++
T Consensus 10 ysRq~~~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~ 89 (287)
T PRK08223 10 FCRNLGWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEM 89 (287)
T ss_pred HhhhhhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCEEEEEecChhhhhcCC-cCCCCCCcEEEEcCCCh--HHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCC
Q 012768 82 LQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVVATQLGE--EKMIKLDRICREANVMLIFARSYGLTGFVRISVKE 157 (456)
Q Consensus 82 l~~lnp~v~v~~~~~~~~~~~~~~-~~~~~~~dvVi~~~~~~--~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~ 157 (456)
|+++||+++|+++... +.+++ .++++++|+||++.|+. ..+..+|+.|+++++|+|++++.|+.|++.+..|+
T Consensus 90 l~~iNP~v~V~~~~~~---l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g~~gqv~v~~p~ 165 (287)
T PRK08223 90 VRDINPELEIRAFPEG---IGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLGMGTALLVFDPG 165 (287)
T ss_pred HHHHCCCCEEEEEecc---cCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccCCeEEEEEEcCC
Confidence 9999999999987653 44444 56788999999998874 78999999999999999999999999999988764
No 12
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=100.00 E-value=1.5e-34 Score=274.48 Aligned_cols=154 Identities=23% Similarity=0.358 Sum_probs=142.3
Q ss_pred Ccccccc--cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHH
Q 012768 2 SMSTLRI--WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVC 79 (456)
Q Consensus 2 y~RQlrl--wG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~ 79 (456)
||||+++ ||.++|++|++++|+|+||||+|+++|++|+++||++|+|+|+|.|+++||+|||+++++|+|++||++++
T Consensus 2 Y~Rq~~l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~ 81 (228)
T cd00757 2 YSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAA 81 (228)
T ss_pred cceeechhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHH
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCC
Q 012768 80 AFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKE 157 (456)
Q Consensus 80 ~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~ 157 (456)
++|+++||+++++.+...... ++..++++++|+||+|.++...+..++++|+++++|+|++++.|+.|++.+..|+
T Consensus 82 ~~l~~~np~~~i~~~~~~i~~--~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~~g~~g~v~~~~p~ 157 (228)
T cd00757 82 ERLRAINPDVEIEAYNERLDA--ENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAVLGFEGQVTVFIPG 157 (228)
T ss_pred HHHHHhCCCCEEEEecceeCH--HHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEECCC
Confidence 999999999999887654311 1124567889999999999999999999999999999999999999999887765
No 13
>PRK07411 hypothetical protein; Validated
Probab=100.00 E-value=1.6e-34 Score=294.04 Aligned_cols=200 Identities=21% Similarity=0.226 Sum_probs=168.4
Q ss_pred Ccccccc--cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHH
Q 012768 2 SMSTLRI--WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVC 79 (456)
Q Consensus 2 y~RQlrl--wG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~ 79 (456)
|+||+++ ||.++|++|++++|+|+||||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++.+|+|++||++++
T Consensus 19 y~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~ 98 (390)
T PRK07411 19 YSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAK 98 (390)
T ss_pred hhceechhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHH
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCEEEEEecChhhhhcCC-cCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCCc
Q 012768 80 AFLQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEH 158 (456)
Q Consensus 80 ~~l~~lnp~v~v~~~~~~~~~~~~~~-~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~ 158 (456)
++|+++||+++++++... +...+ .+++.++|+||+|.++...+..+|++|++.++|+|++++.|++|++.+..+..
T Consensus 99 ~~l~~~np~v~v~~~~~~---~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~g~~~v~~~~~ 175 (390)
T PRK07411 99 NRILEINPYCQVDLYETR---LSSENALDILAPYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRFEGQATVFNYEG 175 (390)
T ss_pred HHHHHHCCCCeEEEEecc---cCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEccCEEEEEEECCCC
Confidence 999999999999987753 22222 46788999999999999999999999999999999999999999998764321
Q ss_pred eeEecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCcccCCCcHHHHHHHHHHHHHHhc
Q 012768 159 TVVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSH 218 (456)
Q Consensus 159 ~~~~~~~~~~~~dlrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~~ 218 (456)
..|+.|-||+... ...+ .+.......+.+|.++..+++.+..|-..
T Consensus 176 ------------~~c~~c~~~~~~~-~~~~-~~c~~~gvlg~~~~~~g~~~a~eaik~l~ 221 (390)
T PRK07411 176 ------------GPNYRDLYPEPPP-PGMV-PSCAEGGVLGILPGIIGVIQATETIKIIL 221 (390)
T ss_pred ------------CCChHHhcCCCCC-cccC-CCCccCCcCcchHHHHHHHHHHHHHHHHc
Confidence 1355566664321 0100 11122345678889999999999887654
No 14
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=100.00 E-value=2.3e-34 Score=274.19 Aligned_cols=199 Identities=18% Similarity=0.211 Sum_probs=160.2
Q ss_pred CCcccccccC--HHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHH
Q 012768 1 MSMSTLRIWG--EQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSV 78 (456)
Q Consensus 1 ~y~RQlrlwG--~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~ 78 (456)
-||||+++|| .++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+||++++++|+|++||+++
T Consensus 4 ry~Rq~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a 83 (240)
T TIGR02355 4 RYNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESA 83 (240)
T ss_pred ceeeeeecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHH
Confidence 3999999975 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeee-CC
Q 012768 79 CAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISV-KE 157 (456)
Q Consensus 79 ~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~-~~ 157 (456)
+++|+++||+++++.+...... ++..++++++|+||+|.++...+..+|++|+++++|+|++++.|+.|++.+.. ++
T Consensus 84 ~~~l~~inp~v~i~~~~~~i~~--~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~v~~~~~~~ 161 (240)
T TIGR02355 84 KDALTQINPHIAINPINAKLDD--AELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAIRMEGQVSVFTYQD 161 (240)
T ss_pred HHHHHHHCCCcEEEEEeccCCH--HHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEeEEEEEecCC
Confidence 9999999999999987654321 11245788999999999999999999999999999999999999999987543 11
Q ss_pred ceeEecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCcccCCCcHHHHHHHHHHHHHHh
Q 012768 158 HTVVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNS 217 (456)
Q Consensus 158 ~~~~~~~~~~~~~dlrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~ 217 (456)
. ..|+.|.+|...+. .........++.++.++..+++.+..|-.
T Consensus 162 ~------------~~c~~C~~~~~~~~----~~~~~~~gv~~p~~~~~~~~~a~e~ik~l 205 (240)
T TIGR02355 162 G------------EPCYRCLSRLFGEN----ALSCVEAGVMAPVVGVVGSLQAMEAIKVL 205 (240)
T ss_pred C------------CCccccccccCCCC----CCCccccCccchHHHHHHHHHHHHHHHHH
Confidence 1 11333433221110 11112233466677788778887776643
No 15
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=1.1e-34 Score=291.75 Aligned_cols=200 Identities=19% Similarity=0.169 Sum_probs=166.0
Q ss_pred Ccccccc--cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHH
Q 012768 2 SMSTLRI--WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVC 79 (456)
Q Consensus 2 y~RQlrl--wG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~ 79 (456)
|+||+++ ||.++|++|++++|+|+||||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++++|+|++||++++
T Consensus 9 Y~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~ 88 (355)
T PRK05597 9 YRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAR 88 (355)
T ss_pred hhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHH
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCEEEEEecChhhhhcCC-cCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCCc
Q 012768 80 AFLQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEH 158 (456)
Q Consensus 80 ~~l~~lnp~v~v~~~~~~~~~~~~~~-~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~ 158 (456)
++|+++||+++++++.... ...+ .++++++|+||+|.++...+..+|+.|+++++|||++++.|+.|++.+..+++
T Consensus 89 ~~l~~~np~v~v~~~~~~i---~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~~g~~g~v~~~~~~~ 165 (355)
T PRK05597 89 EAMLALNPDVKVTVSVRRL---TWSNALDELRDADVILDGSDNFDTRHLASWAAARLGIPHVWASILGFDAQLSVFHAGH 165 (355)
T ss_pred HHHHHHCCCcEEEEEEeec---CHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCeEEEEEEcCCC
Confidence 9999999999999876543 2222 46788999999999999999999999999999999999999999999866442
Q ss_pred eeEecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCcccCCCcHHHHHHHHHHHHHHhc
Q 012768 159 TVVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSH 218 (456)
Q Consensus 159 ~~~~~~~~~~~~dlrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~~ 218 (456)
. .|+.|-||+...- +... ........+.+|.++..+++.|..|-..
T Consensus 166 ~------------~~~~~~~~~~~~~-~~~~-~c~~~gv~g~~~~~~g~~~a~e~ik~l~ 211 (355)
T PRK05597 166 G------------PIYEDLFPTPPPP-GSVP-SCSQAGVLGPVVGVVGSAMAMEALKLIT 211 (355)
T ss_pred C------------CCHHHhCCCCCCc-cCCC-CccccCcchhHHHHHHHHHHHHHHHHHh
Confidence 1 1334444432110 0000 1112334677888888888888877543
No 16
>PRK08328 hypothetical protein; Provisional
Probab=100.00 E-value=2.6e-34 Score=272.75 Aligned_cols=193 Identities=24% Similarity=0.257 Sum_probs=162.2
Q ss_pred CcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCc-chHHHHHH
Q 012768 2 SMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGE-SKAKSVCA 80 (456)
Q Consensus 2 y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~-~Ka~~~~~ 80 (456)
|+||+++||.++|++|++++|+|+||||+|++++++|+++|||+|+|+|+|.++.+||+||++++++|+|+ +|++++++
T Consensus 10 y~Rq~~~~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~ 89 (231)
T PRK08328 10 YDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKW 89 (231)
T ss_pred HhhHHHhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999 59999999
Q ss_pred HHHHhCCCCEEEEEecChhhhhcCC-cCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCCce
Q 012768 81 FLQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHT 159 (456)
Q Consensus 81 ~l~~lnp~v~v~~~~~~~~~~~~~~-~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~~ 159 (456)
+|+++||+++++.+... +.+.+ .++++++|+||+|.++...+..++++|+++++|+|++++.|++|++++..|+++
T Consensus 90 ~l~~~np~v~v~~~~~~---~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~~g~~G~v~~~~p~~~ 166 (231)
T PRK08328 90 KLERFNSDIKIETFVGR---LSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVEGTYGQVTTIVPGKT 166 (231)
T ss_pred HHHHhCCCCEEEEEecc---CCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeeccCEEEEEEECCCCC
Confidence 99999999999987643 22223 356889999999999999999999999999999999999999999998877643
Q ss_pred eEecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCcccCCCcHHHHHHHHHHHHHH
Q 012768 160 VVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTN 216 (456)
Q Consensus 160 ~~~~~~~~~~~dlrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~ 216 (456)
.|+.|.||+... ........+.+|.++..+.+.+..|-
T Consensus 167 ------------~c~~~~~~~~~~-------~~~~~~~~~~~~~ii~~~~a~e~~k~ 204 (231)
T PRK08328 167 ------------KRLREIFPKVKK-------KKGKFPILGATAGVIGSIQAMEVIKL 204 (231)
T ss_pred ------------CCHHHhCCCCCC-------ccccCCcCchHHHHHHHHHHHHHHHH
Confidence 134445553211 01112235667778877887776654
No 17
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=9.8e-33 Score=306.07 Aligned_cols=182 Identities=23% Similarity=0.358 Sum_probs=159.6
Q ss_pred CcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCC-----CcEEEEeCCcccccCCCccccccccccCcchHH
Q 012768 2 SMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGI-----GSITVIDGSKVEVGDLGNNFMLDESCVGESKAK 76 (456)
Q Consensus 2 y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv-----~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~ 76 (456)
|+||+++||.++|++|++++|+|+||||+|||++|||+++|| |+|+|+|.|.|+.+||+|||+++.+|||++||+
T Consensus 402 Ydrqi~l~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk~Ka~ 481 (1008)
T TIGR01408 402 YDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGKPKSY 481 (1008)
T ss_pred hHHHHHHcCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCcHHHH
Confidence 899999999999999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCEEEEEecChhhhhc--CCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEee
Q 012768 77 SVCAFLQELNDAVKAKFIEEYPEALIE--MNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRIS 154 (456)
Q Consensus 77 ~~~~~l~~lnp~v~v~~~~~~~~~~~~--~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~ 154 (456)
+++++++++||+++++++......-++ -+.++|+++|+||+|.|+..++..+++.|+.+++|+|.+++.|+.|++++.
T Consensus 482 vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~~~iPli~~gt~G~~G~v~v~ 561 (1008)
T TIGR01408 482 TAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLAFLKPLLESGTLGTKGNTQVV 561 (1008)
T ss_pred HHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCceeeEEEE
Confidence 999999999999999988765322111 124688999999999999999999999999999999999999999999999
Q ss_pred eCCce-eEecCCCCCCCCcccCCCCchhhhhhhc
Q 012768 155 VKEHT-VVESKPDHFLDDLRLNNPWPELRKFAET 187 (456)
Q Consensus 155 ~~~~~-~~~~~~~~~~~dlrl~~p~p~l~~~~~~ 187 (456)
.|+++ +.+++++. .+...|+..|..+-..
T Consensus 562 ip~~te~y~~~~d~----~~~~~P~Ctl~~~P~~ 591 (1008)
T TIGR01408 562 VPHLTESYGSSRDP----PEKEIPFCTLKSFPAA 591 (1008)
T ss_pred eCCCcCCCCCCCCC----CCCCCCcccccCCCCC
Confidence 99854 55555542 2345566666665444
No 18
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=100.00 E-value=7.5e-34 Score=289.66 Aligned_cols=203 Identities=21% Similarity=0.219 Sum_probs=166.4
Q ss_pred CCcccccc--cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHH
Q 012768 1 MSMSTLRI--WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSV 78 (456)
Q Consensus 1 ~y~RQlrl--wG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~ 78 (456)
.|+||+++ ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+|||+++++|+|++||+++
T Consensus 22 ry~Rq~~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a 101 (392)
T PRK07878 22 RYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSA 101 (392)
T ss_pred HhhheechhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHH
Confidence 39999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCEEEEEecChhhhhcCC-cCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCC
Q 012768 79 CAFLQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKE 157 (456)
Q Consensus 79 ~~~l~~lnp~v~v~~~~~~~~~~~~~~-~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~ 157 (456)
+++|+++||+++++++.... ...+ .++++++|+||+|.++...+..+|++|+++++|||++++.|++|++++..++
T Consensus 102 ~~~l~~~np~v~i~~~~~~i---~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~G~v~~~~~~ 178 (392)
T PRK07878 102 RDSIVEINPLVNVRLHEFRL---DPSNAVELFSQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSIYRFEGQASVFWED 178 (392)
T ss_pred HHHHHHhCCCcEEEEEeccC---ChhHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEEecC
Confidence 99999999999998876533 2222 4678899999999999999999999999999999999999999999976532
Q ss_pred ceeEecCCCCCCCCcccCCCCchhhh--hhhcccCCCCCCcccCCCcHHHHHHHHHHHHHHhc
Q 012768 158 HTVVESKPDHFLDDLRLNNPWPELRK--FAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSH 218 (456)
Q Consensus 158 ~~~~~~~~~~~~~dlrl~~p~p~l~~--~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~~ 218 (456)
+ |+.+.+ |+.|-||+... ...+++ .....+.+|.++..+++.+..|...
T Consensus 179 ~------~~~~~~--c~~c~~~~~~~~~~~~~~~----~~gv~g~~~~~~g~~~a~e~ik~l~ 229 (392)
T PRK07878 179 A------PDGLGL--NYRDLYPEPPPPGMVPSCA----EGGVLGVLCASIGSIMGTEAIKLIT 229 (392)
T ss_pred C------CCCCCC--eeeeecCCCCCccCCCCCc----cCCccchHHHHHHHHHHHHHHHHHh
Confidence 1 111122 33444443211 111221 2334677889999999988887543
No 19
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=100.00 E-value=1.4e-33 Score=284.43 Aligned_cols=203 Identities=18% Similarity=0.271 Sum_probs=168.0
Q ss_pred Ccccccc--cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHH
Q 012768 2 SMSTLRI--WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVC 79 (456)
Q Consensus 2 y~RQlrl--wG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~ 79 (456)
|+||+++ ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++||+|||+++++|+|++||++++
T Consensus 22 y~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~ 101 (370)
T PRK05600 22 TARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAA 101 (370)
T ss_pred hhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHH
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCEEEEEecChhhhhcCC-cCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCCc
Q 012768 80 AFLQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEH 158 (456)
Q Consensus 80 ~~l~~lnp~v~v~~~~~~~~~~~~~~-~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~ 158 (456)
++|+++||+++++.+... +.+.+ .++++++|+||+|.++...+..+|++|+++++|+|++++.|+.|++.+..++-
T Consensus 102 ~~l~~~np~v~i~~~~~~---i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~~g~~G~v~v~~~~~ 178 (370)
T PRK05600 102 ERLKEIQPDIRVNALRER---LTAENAVELLNGVDLVLDGSDSFATKFLVADAAEITGTPLVWGTVLRFHGELAVFNSGP 178 (370)
T ss_pred HHHHHHCCCCeeEEeeee---cCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCEEEEEEEecCC
Confidence 999999999999887643 22223 45788999999999999999999999999999999999999999998764320
Q ss_pred eeEecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCcccCCCcHHHHHHHHHHHHHHhc
Q 012768 159 TVVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSH 218 (456)
Q Consensus 159 ~~~~~~~~~~~~dlrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~~ 218 (456)
. ....|+.|-||+..+. +.. .+.......+.+|.++..+.+.+..|...
T Consensus 179 -------~--~~~~~~~~l~~~~~~~-~~~-~~c~~~gvlg~~~~~ig~~~a~eaik~l~ 227 (370)
T PRK05600 179 -------D--HRGVGLRDLFPEQPSG-DSI-PDCATAGVLGATTAVIGALMATEAIKFLT 227 (370)
T ss_pred -------C--CCCCCcHhhCCCCCcc-ccC-CCCccCCcchhHHHHHHHHHHHHHHHHHh
Confidence 0 0124666777754221 000 01112234677888888888888877543
No 20
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=100.00 E-value=2.4e-32 Score=272.56 Aligned_cols=198 Identities=18% Similarity=0.221 Sum_probs=161.5
Q ss_pred Ccccccc--cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccC--cchHHH
Q 012768 2 SMSTLRI--WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVG--ESKAKS 77 (456)
Q Consensus 2 y~RQlrl--wG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG--~~Ka~~ 77 (456)
||||+++ ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+||++++++|+| ++||++
T Consensus 5 Y~Rq~~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~a 84 (338)
T PRK12475 5 YSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIA 84 (338)
T ss_pred hhhhhchhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHH
Confidence 9999998 899999999999999999999999999999999999999999999999999999999999985 899999
Q ss_pred HHHHHHHhCCCCEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCC
Q 012768 78 VCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKE 157 (456)
Q Consensus 78 ~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~ 157 (456)
++++|+++||+++++++...... +...++++++|+||++.++...+..+|++|+++++|+|++++.|++|++++..|+
T Consensus 85 a~~~l~~inp~v~i~~~~~~~~~--~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~~~g~~G~~~~~~P~ 162 (338)
T PRK12475 85 AKEHLRKINSEVEIVPVVTDVTV--EELEELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGGCVGSYGVTYTIIPG 162 (338)
T ss_pred HHHHHHHHCCCcEEEEEeccCCH--HHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEEEEEEECCC
Confidence 99999999999999887653211 1124567899999999999999999999999999999999999999999887765
Q ss_pred ceeEecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCcccCCCcHHHHHHHHHHHHHHh
Q 012768 158 HTVVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNS 217 (456)
Q Consensus 158 ~~~~~~~~~~~~~dlrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~ 217 (456)
.+ .|+.|-+|.+..-...+| .....+.++.++..+++.+..|-.
T Consensus 163 ~t------------pC~~Cl~~~~p~~~~~c~----~~Gvl~p~v~~iaslqa~EalK~L 206 (338)
T PRK12475 163 KT------------PCLRCLMEHVPVGGATCD----TAGIIQPAVQIVVAYQVTEALKIL 206 (338)
T ss_pred CC------------CCHHHhcCCCCCCCCCCc----cCCcCchHHHHHHHHHHHHHHHHH
Confidence 21 255555554321111112 222344555677777777766643
No 21
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=100.00 E-value=2.8e-32 Score=272.12 Aligned_cols=197 Identities=18% Similarity=0.199 Sum_probs=161.7
Q ss_pred Ccccccc--cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccC--cchHHH
Q 012768 2 SMSTLRI--WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVG--ESKAKS 77 (456)
Q Consensus 2 y~RQlrl--wG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG--~~Ka~~ 77 (456)
||||+++ ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+||++++++|+| ++|+++
T Consensus 5 Y~Rq~~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~a 84 (339)
T PRK07688 5 YSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVA 84 (339)
T ss_pred hhhhhchhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHH
Confidence 9999998 999999999999999999999999999999999999999999999999999999999999995 599999
Q ss_pred HHHHHHHhCCCCEEEEEecChhhhhcCC-cCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeC
Q 012768 78 VCAFLQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVK 156 (456)
Q Consensus 78 ~~~~l~~lnp~v~v~~~~~~~~~~~~~~-~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~ 156 (456)
++++|+++||+++++.+.... .+.+ .++++++|+||+|.++...+..+|++|+++++|+|++++.|++|++++..|
T Consensus 85 a~~~l~~inp~v~v~~~~~~~---~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~~g~~G~~~~~~p 161 (339)
T PRK07688 85 AKKRLEEINSDVRVEAIVQDV---TAEELEELVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGACVGSYGLSYTIIP 161 (339)
T ss_pred HHHHHHHHCCCcEEEEEeccC---CHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeeeeeeeEEEEECC
Confidence 999999999999998876532 2222 456889999999999999999999999999999999999999999887654
Q ss_pred CceeEecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCcccCCCcHHHHHHHHHHHHHHh
Q 012768 157 EHTVVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNS 217 (456)
Q Consensus 157 ~~~~~~~~~~~~~~dlrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~ 217 (456)
+. ..|+.|-||++..-...+ .+....+.+|.++..+++.+..|-.
T Consensus 162 ~~------------~pC~~Cl~~~~~~~~~~c----~~~gv~~p~~~~i~~~~a~ealk~l 206 (339)
T PRK07688 162 GK------------TPCLRCLLQSIPLGGATC----DTAGIISPAVQIVASYQVTEALKLL 206 (339)
T ss_pred CC------------CCCeEeecCCCCCCCCCC----ccCCcccHHHHHHHHHHHHHHHHHH
Confidence 41 124444444332211111 1223355677788888888777643
No 22
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=99.97 E-value=3.3e-30 Score=252.50 Aligned_cols=138 Identities=30% Similarity=0.448 Sum_probs=127.3
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChhh
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEA 100 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~~ 100 (456)
+|+|+|+||+|+|++|||+++|||+|+|+|+|.++.+||+|||+++++|+|++||++++++++++||+++++++......
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999987654322
Q ss_pred hhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCCce
Q 012768 101 LIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHT 159 (456)
Q Consensus 101 ~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~~ 159 (456)
. ..+.+++++||+||++.++.+.+..+|++|+.+++|||.+++.|++|++++++|+++
T Consensus 81 ~-~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~~G~v~vi~p~~t 138 (312)
T cd01489 81 P-DFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGFLGQVQVIKKGKT 138 (312)
T ss_pred c-cchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCcceeEEEEEcCCCC
Confidence 1 123578999999999999999999999999999999999999999999999999855
No 23
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=99.97 E-value=1.7e-29 Score=256.38 Aligned_cols=138 Identities=25% Similarity=0.378 Sum_probs=127.0
Q ss_pred cEEEEcCChhHHHHHHHHHHcCC-----CcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEe
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGI-----GSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE 95 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv-----~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~ 95 (456)
+|+|||+||+|||++|||+++|| |+|+|+|.|.|+.+||+|||+++++|||++||+++++.++++||+++++++.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~ 80 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ 80 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999987
Q ss_pred cChhhhhc--CCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCCc
Q 012768 96 EYPEALIE--MNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEH 158 (456)
Q Consensus 96 ~~~~~~~~--~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~ 158 (456)
......++ -+.++++++|+||.|.|+...|..+++.|+.+++|+|.+++.|+.|++.+..|++
T Consensus 81 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G~~G~v~v~iP~~ 145 (435)
T cd01490 81 NRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGTKGNTQVVIPHL 145 (435)
T ss_pred cccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecccceeEEEEEeCCC
Confidence 64432111 1257889999999999999999999999999999999999999999999999874
No 24
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=99.97 E-value=5.4e-31 Score=248.93 Aligned_cols=161 Identities=23% Similarity=0.275 Sum_probs=136.1
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChhh
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEA 100 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~~ 100 (456)
+|+|+|+||+|||++|+|+++|+|+|+++|.|.|+.+||+|||+++++|+|++||++++++++++||+++++.+......
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~ 80 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP 80 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999987765422
Q ss_pred hhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCCc-eeEecCCCC--CCCCcccCCC
Q 012768 101 LIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEH-TVVESKPDH--FLDDLRLNNP 177 (456)
Q Consensus 101 ~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~-~~~~~~~~~--~~~dlrl~~p 177 (456)
....+.+++++||+||++.|+...+..+|+.|+.+++|+|.+++.|+.|++++..|++ .+.+..++. .....|....
T Consensus 81 ~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~~G~~G~v~vi~p~~t~c~~C~~~~~~~~~p~Cti~~ 160 (234)
T cd01484 81 EQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEGFKGNAQVILPGMTECIECTLYPPQKNFPMCTIAS 160 (234)
T ss_pred hhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcccCCceEEEEEcCCCCCCcccCCCCCCCCCCccccCC
Confidence 1222356889999999999999999999999999999999999999999999998874 344433221 1223455555
Q ss_pred Cchh
Q 012768 178 WPEL 181 (456)
Q Consensus 178 ~p~l 181 (456)
+|.+
T Consensus 161 ~P~~ 164 (234)
T cd01484 161 MPRL 164 (234)
T ss_pred CCCC
Confidence 5544
No 25
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.97 E-value=1.1e-30 Score=265.53 Aligned_cols=202 Identities=22% Similarity=0.275 Sum_probs=165.2
Q ss_pred Ccccccc--cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHH
Q 012768 2 SMSTLRI--WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVC 79 (456)
Q Consensus 2 y~RQlrl--wG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~ 79 (456)
|+||+++ ||.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+.+||+||++++++|+|++||++++
T Consensus 116 y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~ 195 (376)
T PRK08762 116 YSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAA 195 (376)
T ss_pred HHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHH
Confidence 8999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCEEEEEecChhhhhcCC-cCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCCc
Q 012768 80 AFLQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEH 158 (456)
Q Consensus 80 ~~l~~lnp~v~v~~~~~~~~~~~~~~-~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~ 158 (456)
++|+++||+++++.+..... +.+ .++++++|+||+|+++...+..+|++|+++++|+|++++.|+.|++.+..|+.
T Consensus 196 ~~l~~~np~v~v~~~~~~~~---~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~g~~g~v~~~~p~~ 272 (376)
T PRK08762 196 QRLAALNPDVQVEAVQERVT---SDNVEALLQDVDVVVDGADNFPTRYLLNDACVKLGKPLVYGAVFRFEGQVSVFDAGR 272 (376)
T ss_pred HHHHHHCCCCEEEEEeccCC---hHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEEeCCC
Confidence 99999999999887664322 112 34578999999999999999999999999999999999999999999877652
Q ss_pred eeEecCCCCCCCCcccCCCCchhhh--hhhcccCCCCCCcccCCCcHHHHHHHHHHHHHHhc
Q 012768 159 TVVESKPDHFLDDLRLNNPWPELRK--FAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSH 218 (456)
Q Consensus 159 ~~~~~~~~~~~~dlrl~~p~p~l~~--~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~~ 218 (456)
. | ....|+.|-||+... ....++ .....+.+|.++..+.+.+..|-..
T Consensus 273 ~-----~---~~~~c~~c~~~~~~~~~~~~~~~----~~gv~g~~~~~~~~~~a~e~~k~l~ 322 (376)
T PRK08762 273 Q-----R---GQAPCYRCLFPEPPPPELAPSCA----EAGVLGVLPGVIGLLQATEAIKLLL 322 (376)
T ss_pred C-----C---CCCCCHhhcCCCCCCcccCCCCc----cCCcchhhHHHHHHHHHHHHHHHHh
Confidence 1 0 113356666654321 111111 1223566778888888887776443
No 26
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=99.97 E-value=3.8e-30 Score=248.50 Aligned_cols=202 Identities=23% Similarity=0.273 Sum_probs=162.4
Q ss_pred CCcccccccCHH--HHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHH
Q 012768 1 MSMSTLRIWGEQ--GQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSV 78 (456)
Q Consensus 1 ~y~RQlrlwG~~--~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~ 78 (456)
.||||+++|+.. +|++|+.++|+|+|+||+|++++++|+++|||+++|+|+|+|+.+||+||++++++|+|++|++++
T Consensus 10 ry~Rqi~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~dig~~Ka~~a 89 (254)
T COG0476 10 RYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADVGKPKAEVA 89 (254)
T ss_pred hhcceeeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeecccccCCcHHHHH
Confidence 399999997655 599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCEEEEEecChhhhhcCC-cCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCC
Q 012768 79 CAFLQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKE 157 (456)
Q Consensus 79 ~~~l~~lnp~v~v~~~~~~~~~~~~~~-~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~ 157 (456)
++.++++||.+++..+... +...+ .+++.++|+|+++.++...+..+|+.|+++++|++++++.|++|+++++.++
T Consensus 90 ~~~l~~ln~~v~v~~~~~~---l~~~~~~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~~pli~~~~~~~~g~~~~~~~~ 166 (254)
T COG0476 90 AKALRKLNPLVEVVAYLER---LDEENAEELIAQFDVVLDCTDNFETRYLINDACVKLGIPLVHGGAIGFEGQVTVIIPG 166 (254)
T ss_pred HHHHHHhCCCCeEEEeecc---cChhhHHHHhccCCEEEECCCCHHHHHHHHHHHHHhCCCeEeeeeccceEEEEEEecC
Confidence 9999999999999987764 33334 4778899999999999999999999999999999999999999999999877
Q ss_pred ceeEecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCcccCCCcHHHHHHHHHHHHHHh
Q 012768 158 HTVVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNS 217 (456)
Q Consensus 158 ~~~~~~~~~~~~~dlrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~ 217 (456)
. +..|+.|-+|+...-. ..+..-.+......++..+..+.+++..+..
T Consensus 167 ~-----------~~~c~~~~~~~~~~~~-~~~~~c~~~gv~~~~~~~~~~~~~~~~~k~~ 214 (254)
T COG0476 167 D-----------KTPCYRCLFPEKPPPG-LVPTSCDEAGVLGPLVGVVGSLQALEAIKLL 214 (254)
T ss_pred C-----------CCCcccccCCCCCCcc-ccccccccCCccccccchhhhHHHHHHHHHh
Confidence 3 1234444444443210 0000011222334455566666666655543
No 27
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=99.97 E-value=4.1e-30 Score=249.21 Aligned_cols=158 Identities=23% Similarity=0.323 Sum_probs=133.9
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChhh
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEA 100 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~~ 100 (456)
+|+|+|+||+|||++|||+++|||+|+|+|.|.|+.+||+|||+++.+|+|++||++++++|+++||+++++++...
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~--- 77 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGK--- 77 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecc---
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999887653
Q ss_pred hhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHc--------CCeEEEEeeccceeeEEeeeCCce-----eEecCCCC
Q 012768 101 LIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREA--------NVMLIFARSYGLTGFVRISVKEHT-----VVESKPDH 167 (456)
Q Consensus 101 ~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~--------~ip~i~~~~~G~~G~v~~~~~~~~-----~~~~~~~~ 167 (456)
+.+.+.+++++||+||++.|+.+.|..+|+.|.+. ++|+|.+++.|+.|++++..|+++ ..+.+|+.
T Consensus 78 i~~~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi~P~~t~C~~C~~d~~p~~ 157 (291)
T cd01488 78 IQDKDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHARVILPGITACIECSLDLFPPQ 157 (291)
T ss_pred cCchhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEEEEEEcCCCCCccccCCCCCCCC
Confidence 33345688999999999999999999999987554 599999999999999999998854 23444444
Q ss_pred CCCCcccCCCCchh
Q 012768 168 FLDDLRLNNPWPEL 181 (456)
Q Consensus 168 ~~~dlrl~~p~p~l 181 (456)
...-+|-..-+|..
T Consensus 158 ~~~p~Cti~~~P~~ 171 (291)
T cd01488 158 VTFPLCTIANTPRL 171 (291)
T ss_pred CCCCcccccCCCCC
Confidence 33334444444443
No 28
>PRK14852 hypothetical protein; Provisional
Probab=99.97 E-value=2.8e-30 Score=280.15 Aligned_cols=156 Identities=17% Similarity=0.136 Sum_probs=142.5
Q ss_pred CcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHH
Q 012768 2 SMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAF 81 (456)
Q Consensus 2 y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~ 81 (456)
|+||+++||.++|++|++++|+|+||||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++.+|||++||++++++
T Consensus 315 y~Rqi~lig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~ 394 (989)
T PRK14852 315 FSRNLGLVDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTER 394 (989)
T ss_pred hhchHhhcCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCEEEEEecChhhhhcCC-cCCCCCCcEEEEcCCC--hHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCCc
Q 012768 82 LQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVVATQLG--EEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEH 158 (456)
Q Consensus 82 l~~lnp~v~v~~~~~~~~~~~~~~-~~~~~~~dvVi~~~~~--~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~ 158 (456)
++++||+++|+++... +.+++ .++++++|+||+|.|+ ...+..+++.|++++||+|++++.|+.|++++..++.
T Consensus 395 l~~INP~v~I~~~~~~---I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~~g~v~v~~p~~ 471 (989)
T PRK14852 395 ALSVNPFLDIRSFPEG---VAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGYSCALLVFMPGG 471 (989)
T ss_pred HHHHCCCCeEEEEecC---CCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccccCeeEEEEcCCC
Confidence 9999999999998653 33333 5788999999998876 4567788889999999999999999999999988664
Q ss_pred ee
Q 012768 159 TV 160 (456)
Q Consensus 159 ~~ 160 (456)
.+
T Consensus 472 ~~ 473 (989)
T PRK14852 472 MN 473 (989)
T ss_pred CC
Confidence 43
No 29
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=99.97 E-value=3.9e-30 Score=246.80 Aligned_cols=140 Identities=22% Similarity=0.377 Sum_probs=127.0
Q ss_pred CcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHH
Q 012768 2 SMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAF 81 (456)
Q Consensus 2 y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~ 81 (456)
|+||.+|||.++|++|++++|+|+|+||+|+++|++|+++|||+|||+|.|.++.+|++||+++..+++|++|+++++++
T Consensus 13 f~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~r 92 (268)
T PRK15116 13 FGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAER 92 (268)
T ss_pred HhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCEEEEEecChhhhhcCC-cCCC-CCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEee
Q 012768 82 LQELNDAVKAKFIEEYPEALIEMN-PPFF-SQFTLVVATQLGEEKMIKLDRICREANVMLIFARS 144 (456)
Q Consensus 82 l~~lnp~v~v~~~~~~~~~~~~~~-~~~~-~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~ 144 (456)
+.++||+++++.+... +...+ .+++ .+||+||+|.++...+..|+++|+++++|+|.++.
T Consensus 93 l~~INP~~~V~~i~~~---i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gG 154 (268)
T PRK15116 93 IRQINPECRVTVVDDF---ITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGG 154 (268)
T ss_pred HHhHCCCcEEEEEecc---cChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 9999999999887542 22222 2334 47999999999988899999999999999998743
No 30
>PRK14851 hypothetical protein; Provisional
Probab=99.96 E-value=6.6e-30 Score=273.95 Aligned_cols=155 Identities=17% Similarity=0.165 Sum_probs=143.2
Q ss_pred CcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHH
Q 012768 2 SMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAF 81 (456)
Q Consensus 2 y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~ 81 (456)
|+||+++||.++|++|++++|+|+||||+|++++++|+++|||+|+|+|+|.|+.+||+||++++.+|+|++|+++++++
T Consensus 26 y~R~~~l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~ 105 (679)
T PRK14851 26 FSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQ 105 (679)
T ss_pred hhhhHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCEEEEEecChhhhhcCC-cCCCCCCcEEEEcCCC--hHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCCc
Q 012768 82 LQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVVATQLG--EEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEH 158 (456)
Q Consensus 82 l~~lnp~v~v~~~~~~~~~~~~~~-~~~~~~~dvVi~~~~~--~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~ 158 (456)
++++||+++|+++... +.+++ .++++++|+||+|.|+ ...+..+++.|++++||+|++++.|+.|++++..++.
T Consensus 106 l~~inP~~~I~~~~~~---i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~~~~~p~~ 182 (679)
T PRK14851 106 ALSINPFLEITPFPAG---INADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGYSSAMLVFTPQG 182 (679)
T ss_pred HHHhCCCCeEEEEecC---CChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeecccccceEEEEcCCC
Confidence 9999999999987754 33334 5678999999988886 4568899999999999999999999999999988764
Q ss_pred e
Q 012768 159 T 159 (456)
Q Consensus 159 ~ 159 (456)
.
T Consensus 183 ~ 183 (679)
T PRK14851 183 M 183 (679)
T ss_pred C
Confidence 3
No 31
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.96 E-value=4.6e-30 Score=244.47 Aligned_cols=197 Identities=21% Similarity=0.252 Sum_probs=169.1
Q ss_pred Ccccccc--cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHH
Q 012768 2 SMSTLRI--WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVC 79 (456)
Q Consensus 2 y~RQlrl--wG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~ 79 (456)
||||+-+ +|.+||.+|++++||||||||+||-++..|+.+|||++-|||.|+|+.+||.||.+++++.+|+.||++++
T Consensus 47 YsRQlilpe~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVlh~ea~vg~~Ka~sA~ 126 (427)
T KOG2017|consen 47 YSRQLILPEFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVLHTEARVGMHKAESAA 126 (427)
T ss_pred hhheeeccccccccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHhhhhhhhhhHHHHHHH
Confidence 8999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCEEEEEecChhhhhcCC-cCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeee-CC
Q 012768 80 AFLQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISV-KE 157 (456)
Q Consensus 80 ~~l~~lnp~v~v~~~~~~~~~~~~~~-~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~-~~ 157 (456)
..++++||.|+|..+.+ .+...| .+.+++||+|++|+|+..+|+.+++.|...++|+|.++..++-|++.+.- .+
T Consensus 127 ~~lr~lNs~v~v~~y~~---~L~~sNa~~Ii~~YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgSaLr~EGQLtvYny~~ 203 (427)
T KOG2017|consen 127 AFLRRLNSHVEVQTYNE---FLSSSNAFDIIKQYDVVLDCTDNVPTRYLISDVCVLLGKPLVSGSALRWEGQLTVYNYNN 203 (427)
T ss_pred HHHHhcCCCceeeechh---hccchhHHHHhhccceEEEcCCCccchhhhhhHHHHcCCcccccccccccceeEEeecCC
Confidence 99999999999887654 455455 57789999999999999999999999999999999999999999997753 22
Q ss_pred ceeEecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCcccCCCcHHHHHHHHHHHHHH
Q 012768 158 HTVVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTN 216 (456)
Q Consensus 158 ~~~~~~~~~~~~~dlrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~ 216 (456)
+|..|-.-|-|...+-+.++ .+.-..+.+++++..++++|..|.
T Consensus 204 -----------GPCYRClFP~Ppp~~~vt~C----~dgGVlGpv~GviG~mQALE~iKl 247 (427)
T KOG2017|consen 204 -----------GPCYRCLFPNPPPPEAVTNC----ADGGVLGPVTGVIGCMQALETIKL 247 (427)
T ss_pred -----------CceeeecCCCCcChHHhccc----ccCceeecchhhhhHHHHHHHHHH
Confidence 33333333333333344443 344557888999999999998875
No 32
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.96 E-value=7.6e-29 Score=216.46 Aligned_cols=134 Identities=31% Similarity=0.447 Sum_probs=118.7
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecC
Q 012768 18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY 97 (456)
Q Consensus 18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~ 97 (456)
++++|+|+|+|++|++++++|+++|+++|+|+|+|.|+++|++||++++.+|+|++|+++++++|+++||+++++.+...
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred hhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEe
Q 012768 98 PEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRI 153 (456)
Q Consensus 98 ~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~ 153 (456)
... +...++++++|+||+|.++.+.+..++++|+++++|+|.+++.|++|++++
T Consensus 81 ~~~--~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~~G~~~~ 134 (135)
T PF00899_consen 81 IDE--ENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAGVNGFYGQVVM 134 (135)
T ss_dssp CSH--HHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEETTEEEEEE
T ss_pred ccc--ccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEE
Confidence 411 112355679999999999999999999999999999999999999999965
No 33
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=99.96 E-value=7.3e-29 Score=229.79 Aligned_cols=115 Identities=27% Similarity=0.348 Sum_probs=104.7
Q ss_pred CCcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHH
Q 012768 1 MSMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCA 80 (456)
Q Consensus 1 ~y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~ 80 (456)
.||||+|+||.+||+||++++|+|+|+||+|+|++|||+++|||+|+|+|+|.|+.+||+|||++++ ++|++||+++++
T Consensus 8 RYsRQIrLwG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~-dvGk~KAeaAa~ 86 (287)
T PTZ00245 8 RYDRQIRLWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQG-EAGGTRGARALG 86 (287)
T ss_pred HHhHHHHHhCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhcccccccc-ccCCcHHHHHHH
Confidence 3999999999999999999999999999999999999999999999999999999999999999997 689999999999
Q ss_pred HHHHhCCCCEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHH
Q 012768 81 FLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEK 124 (456)
Q Consensus 81 ~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~ 124 (456)
+|+++||+|+++.+... +.. -++|++||+++.+.+.
T Consensus 87 ~L~eLNP~V~V~~i~~r---ld~-----~n~fqvvV~~~~~le~ 122 (287)
T PTZ00245 87 ALQRLNPHVSVYDAVTK---LDG-----SSGTRVTMAAVITEED 122 (287)
T ss_pred HHHHHCCCcEEEEcccc---cCC-----cCCceEEEEEcccHHH
Confidence 99999999999887542 211 3489999999887554
No 34
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=99.96 E-value=3.2e-28 Score=227.85 Aligned_cols=149 Identities=22% Similarity=0.186 Sum_probs=132.3
Q ss_pred CcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHH
Q 012768 2 SMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAF 81 (456)
Q Consensus 2 y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~ 81 (456)
+.++.+.||.++|++|++++|+|+|+||+|++++++|+++||++|+|+|.|.|+.+||+||+++ .+|+|++|+++++++
T Consensus 11 ~~~~~~~~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-~~dvG~~Ka~~a~~~ 89 (212)
T PRK08644 11 EAMLASRHTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQIGMPKVEALKEN 89 (212)
T ss_pred HHHHHhhcCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEee-hhhCCChHHHHHHHH
Confidence 4566777999999999999999999999999999999999999999999999999999999865 789999999999999
Q ss_pred HHHhCCCCEEEEEecChhhhhcCC-cCCCCCCcEEEEcCCChHHHHHHHHHHHHc-CCeEEEEeeccceeeEEee
Q 012768 82 LQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVVATQLGEEKMIKLDRICREA-NVMLIFARSYGLTGFVRIS 154 (456)
Q Consensus 82 l~~lnp~v~v~~~~~~~~~~~~~~-~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~-~ip~i~~~~~G~~G~v~~~ 154 (456)
|+++||+++++.+..... +.+ .++++++|+||.|.++...+..+++.|+++ ++|+|.+...|.+|++...
T Consensus 90 l~~lnp~v~v~~~~~~i~---~~~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~~~~~~~~~~~ 161 (212)
T PRK08644 90 LLEINPFVEIEAHNEKID---EDNIEELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAASGMAGYGDSNSI 161 (212)
T ss_pred HHHHCCCCEEEEEeeecC---HHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeehhhccCCceEE
Confidence 999999999988775432 223 367889999999999999999999999999 9999999777777766543
No 35
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.95 E-value=4.3e-28 Score=228.97 Aligned_cols=135 Identities=24% Similarity=0.356 Sum_probs=121.9
Q ss_pred cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCC
Q 012768 9 WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDA 88 (456)
Q Consensus 9 wG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~ 88 (456)
||.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+++|++||+++..+++|++|+++++++|+++||+
T Consensus 1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~ 80 (231)
T cd00755 1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPE 80 (231)
T ss_pred CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEecChhhhhcCC-cCCC-CCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeecc
Q 012768 89 VKAKFIEEYPEALIEMN-PPFF-SQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYG 146 (456)
Q Consensus 89 v~v~~~~~~~~~~~~~~-~~~~-~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G 146 (456)
++++.+.... .+.+ .+++ .+||+||+|.++...+..|+++|+++++|+|.+...|
T Consensus 81 ~~V~~~~~~i---~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g 137 (231)
T cd00755 81 CEVDAVEEFL---TPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAG 137 (231)
T ss_pred cEEEEeeeec---CHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 9999876532 2222 2333 4699999999999999999999999999999986555
No 36
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.95 E-value=6.4e-28 Score=212.71 Aligned_cols=133 Identities=29% Similarity=0.377 Sum_probs=122.1
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChhh
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEA 100 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~~ 100 (456)
+|+|+|+||+|++++++|+++|+++|+|+|+|.++++|++||++++.+|+|++|+++++++++++||+++++.+......
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999987654322
Q ss_pred hhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeee
Q 012768 101 LIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISV 155 (456)
Q Consensus 101 ~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~ 155 (456)
. ...++++++|+||+|.++...+..++++|+++++|+|.+++.|+.|+++++.
T Consensus 81 ~--~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g~~g~~~~~~ 133 (143)
T cd01483 81 D--NLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLGLGGDIQVID 133 (143)
T ss_pred h--hHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCCcEEEEEEEE
Confidence 1 1146688999999999999999999999999999999999999999999876
No 37
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.2e-27 Score=236.28 Aligned_cols=155 Identities=26% Similarity=0.411 Sum_probs=139.1
Q ss_pred HHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEE
Q 012768 12 QGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKA 91 (456)
Q Consensus 12 ~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v 91 (456)
+-++++..+|||||||||+|||++|||++.|+++|+|||-|+++.+||+|||||+.++||++||.++++..+++||.+++
T Consensus 5 ~~~eai~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l 84 (603)
T KOG2013|consen 5 EKHEAIKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKL 84 (603)
T ss_pred HHHHHhccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCce
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCC-ceeEecCCCC
Q 012768 92 KFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKE-HTVVESKPDH 167 (456)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~-~~~~~~~~~~ 167 (456)
..+..+.... .-+.+|+++||+|+.+.++.++|..+|++|...++|+|.+|+.|+.||+.+...+ ..+.+.+|..
T Consensus 85 ~~yhanI~e~-~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~vPLIesGt~Gf~GQv~~ii~GkTECyeC~pK~ 160 (603)
T KOG2013|consen 85 VPYHANIKEP-KFNVEFFRQFDIVLNALDNLAARRYVNRMCLAASVPLIESGTGGFLGQVQVIIKGKTECYECIPKP 160 (603)
T ss_pred EeccccccCc-chHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCceecCcccccceEEEEecCCcceecccCCC
Confidence 8876643221 1245778899999999999999999999999999999999999999999998876 6666655543
No 38
>PRK07877 hypothetical protein; Provisional
Probab=99.94 E-value=2.2e-26 Score=247.27 Aligned_cols=144 Identities=17% Similarity=0.198 Sum_probs=132.0
Q ss_pred CcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCCccccccccccCcchHHHHHH
Q 012768 2 SMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGI-GSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCA 80 (456)
Q Consensus 2 y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv-~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~ 80 (456)
|+||+.+||.++|++|++++|+|+|+| +|+.+|.+|+++|| |+|+|+|+|.|+.+||+|| +++..|+|++||+++++
T Consensus 90 ~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq-~~~~~diG~~Kv~~a~~ 167 (722)
T PRK07877 90 LDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRV-PAGVFDLGVNKAVVAAR 167 (722)
T ss_pred hhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccc-cCChhhcccHHHHHHHH
Confidence 899999999999999999999999996 99999999999996 9999999999999999998 68999999999999999
Q ss_pred HHHHhCCCCEEEEEecChhhhhcCC-cCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEE
Q 012768 81 FLQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVR 152 (456)
Q Consensus 81 ~l~~lnp~v~v~~~~~~~~~~~~~~-~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~ 152 (456)
+|+++||+++|+++.... ++.+ .++++++|+||+|.|+...+..+|+.|.++++|+|+++..+ |.+.
T Consensus 168 ~l~~inp~i~v~~~~~~i---~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~~~--g~~~ 235 (722)
T PRK07877 168 RIAELDPYLPVEVFTDGL---TEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVLMATSDR--GLLD 235 (722)
T ss_pred HHHHHCCCCEEEEEeccC---CHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCC--CCcC
Confidence 999999999999987643 3333 56788999999999999999999999999999999987544 7774
No 39
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=99.93 E-value=2.2e-26 Score=211.31 Aligned_cols=142 Identities=24% Similarity=0.364 Sum_probs=128.1
Q ss_pred CcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHH
Q 012768 2 SMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAF 81 (456)
Q Consensus 2 y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~ 81 (456)
|+|--||+|.++.++|++++|+|+|+||+|+.++..|+|+|||+|+|+|.|.|+.+|+|||.-....++|++|+++++++
T Consensus 13 f~~~~~l~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~er 92 (263)
T COG1179 13 FGGIARLYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKER 92 (263)
T ss_pred hhhHHHHcChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHH
Confidence 56778999999999999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred HHHhCCCCEEEEEecChhhhhcCC-cCCC-CCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeecc
Q 012768 82 LQELNDAVKAKFIEEYPEALIEMN-PPFF-SQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYG 146 (456)
Q Consensus 82 l~~lnp~v~v~~~~~~~~~~~~~~-~~~~-~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G 146 (456)
++++||+++|+.++. .+++++ .+++ .+||+||+|.|+......|..+|+++++|+|.++..|
T Consensus 93 i~~InP~c~V~~~~~---f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag 156 (263)
T COG1179 93 IKQINPECEVTAIND---FITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAG 156 (263)
T ss_pred HHhhCCCceEeehHh---hhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeecccc
Confidence 999999999998764 344444 3444 4799999999999999999999999999999875433
No 40
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.4e-25 Score=212.03 Aligned_cols=146 Identities=22% Similarity=0.354 Sum_probs=133.8
Q ss_pred CHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCC
Q 012768 10 GEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAV 89 (456)
Q Consensus 10 G~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v 89 (456)
+.|..+.|.+++|||+|+||+|||++|||+++|++.+.++|-|+++.+||+|||+|++.|+|++||+++++++....|..
T Consensus 31 ~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~ 110 (422)
T KOG2015|consen 31 SEENLEFLQDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGC 110 (422)
T ss_pred CHHHHHHHhhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCCc
Confidence 67888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHH---cC-------CeEEEEeeccceeeEEeeeCCc
Q 012768 90 KAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICRE---AN-------VMLIFARSYGLTGFVRISVKEH 158 (456)
Q Consensus 90 ~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~---~~-------ip~i~~~~~G~~G~v~~~~~~~ 158 (456)
.|..... ++.+...+|+++|++||+..|+...|.+||.+..+ .+ ||+|++++.|+.|++++..|+.
T Consensus 111 ~v~~h~~---kIqd~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~KG~arvI~Pg~ 186 (422)
T KOG2015|consen 111 VVVPHRQ---KIQDKPISFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGFKGHARVIYPGI 186 (422)
T ss_pred EEeeeec---chhcCCHHHHhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCcccccceeEEEecCc
Confidence 9777554 45555788999999999999999999999986543 22 6999999999999999999995
No 41
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=99.92 E-value=3e-25 Score=213.62 Aligned_cols=136 Identities=17% Similarity=0.160 Sum_probs=119.9
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccc--cCcchHHHHHHHHHHhCCCCEEEEEecCh
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESC--VGESKAKSVCAFLQELNDAVKAKFIEEYP 98 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~d--vG~~Ka~~~~~~l~~lnp~v~v~~~~~~~ 98 (456)
+|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+||++++.+| +|++||++++++|+++||+|+++.+....
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 6999999999999999999999999999999999999999999999999 99999999999999999999998775321
Q ss_pred ------h---h-----hhc-CCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCC
Q 012768 99 ------E---A-----LIE-MNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKE 157 (456)
Q Consensus 99 ------~---~-----~~~-~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~ 157 (456)
. . ... ...++++++|+|+++.|+.+.|..++.+|..+++|+|. ...|+.|++....+-
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~-aalGfdg~lvmrhg~ 153 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAAKNKLVIN-AALGFDSYLVMRHGA 153 (307)
T ss_pred cccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEE-EEeccceEEEEEeCC
Confidence 0 0 000 01356789999999999999999999999999999998 578999999997653
No 42
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=99.92 E-value=9.8e-25 Score=227.63 Aligned_cols=149 Identities=17% Similarity=0.175 Sum_probs=130.4
Q ss_pred ccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCcccccccccc---CcchHHHHHHHHHH
Q 012768 8 IWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCV---GESKAKSVCAFLQE 84 (456)
Q Consensus 8 lwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dv---G~~Ka~~~~~~l~~ 84 (456)
+...-+.++|++++|+|+||||+||.+|++|+++|||+|||+|+|.|+.+||+||++++.+|+ |++||++++++|++
T Consensus 327 llP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~ 406 (664)
T TIGR01381 327 LHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKR 406 (664)
T ss_pred cCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHH
Confidence 334455689999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hCCCCEEEEEecCh---h-hhhc----------CC-cCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeecccee
Q 012768 85 LNDAVKAKFIEEYP---E-ALIE----------MN-PPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTG 149 (456)
Q Consensus 85 lnp~v~v~~~~~~~---~-~~~~----------~~-~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G 149 (456)
+||+|+++.+.... . .+.+ .+ .++++++|+|+++.|+.+.|..++.+|..+++|+|++. .|+.|
T Consensus 407 InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c~~~~kplI~aA-lGfdg 485 (664)
T TIGR01381 407 IFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPTVLCSRHKKIAISAA-LGFDS 485 (664)
T ss_pred HCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEE-eccce
Confidence 99999998765431 0 0111 01 34678999999999999999999999999999999984 89999
Q ss_pred eEEeeeCC
Q 012768 150 FVRISVKE 157 (456)
Q Consensus 150 ~v~~~~~~ 157 (456)
++.+..|-
T Consensus 486 ~lvmrhG~ 493 (664)
T TIGR01381 486 YVVMRHGI 493 (664)
T ss_pred EEEEEecc
Confidence 99998654
No 43
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.92 E-value=1.3e-24 Score=197.57 Aligned_cols=131 Identities=24% Similarity=0.226 Sum_probs=115.9
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChhh
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEA 100 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~~ 100 (456)
+|+|+|+||+|++++++|+++|+++++|+|.|.|+.+|++||++. .+|+|++|+++++++|+++||+++++.+.....
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~-~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~- 78 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYF-LSQIGEPKVEALKENLREINPFVKIEAINIKID- 78 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhccccc-HhhCCChHHHHHHHHHHHHCCCCEEEEEEeecC-
Confidence 699999999999999999999999999999999999999999854 689999999999999999999999988765432
Q ss_pred hhcCC-cCCCCCCcEEEEcCCChHHHHHHHHHHHHc-CCeEEEEeeccceeeEEeee
Q 012768 101 LIEMN-PPFFSQFTLVVATQLGEEKMIKLDRICREA-NVMLIFARSYGLTGFVRISV 155 (456)
Q Consensus 101 ~~~~~-~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~-~ip~i~~~~~G~~G~v~~~~ 155 (456)
..+ .++++++|+||.|.++...+..+++.|.++ ++|||++...|.+|++.+..
T Consensus 79 --~~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~~~~~~~~~~~~~ 133 (174)
T cd01487 79 --ENNLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCASGMAGFGDSNNIK 133 (174)
T ss_pred --hhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEehhhccCCeEEEE
Confidence 222 467889999999999989888788777776 99999999999999887654
No 44
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=99.91 E-value=2e-24 Score=213.63 Aligned_cols=139 Identities=14% Similarity=0.169 Sum_probs=127.7
Q ss_pred Ccccccc---cC-HHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHH
Q 012768 2 SMSTLRI---WG-EQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKS 77 (456)
Q Consensus 2 y~RQlrl---wG-~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~ 77 (456)
|+||+.+ || .++|++|++++|+ |||+|+.++..|+. |||+++|+|+|.|+.+||+ ++++++|+|++|+++
T Consensus 55 y~r~l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~--~L~~~~diG~~K~~~ 128 (318)
T TIGR03603 55 IIDNLTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEI--DLYSKEFILKKDIRD 128 (318)
T ss_pred HHHHhcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHH--HHhChhhcCcHHHHH
Confidence 7899999 67 5589999999999 99999999999999 9999999999999999999 899999999999999
Q ss_pred HHHHHHHhCCCCEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHH--HHHHHHHcCCeEEEEeeccceeeEEeee
Q 012768 78 VCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIK--LDRICREANVMLIFARSYGLTGFVRISV 155 (456)
Q Consensus 78 ~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~--l~~~~~~~~ip~i~~~~~G~~G~v~~~~ 155 (456)
++++|.++||.++++... +.++++|+||+|.|+...+.. +|++|.++++|||+++..|+.|++...+
T Consensus 129 a~~~L~~lnp~v~i~~~~-----------~li~~~DlVid~tDn~~~r~L~~iN~ac~~~~~PlV~gav~g~~Gqv~~~~ 197 (318)
T TIGR03603 129 LTSNLDALELTKNVDELK-----------DLLKDYNYIIICTEHSNISLLRGLNKLSKETKKPNTIAFIDGPFVFITCTL 197 (318)
T ss_pred HHHHHHHhCCCCEEeeHH-----------HHhCCCCEEEECCCCccHhHHHHHHHHHHHHCCCEEEEEEccCEEEEEEEe
Confidence 999999999999987532 346789999999999887755 9999999999999999999999999877
Q ss_pred CC
Q 012768 156 KE 157 (456)
Q Consensus 156 ~~ 157 (456)
|+
T Consensus 198 P~ 199 (318)
T TIGR03603 198 PP 199 (318)
T ss_pred CC
Confidence 64
No 45
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.1e-23 Score=219.44 Aligned_cols=158 Identities=25% Similarity=0.329 Sum_probs=145.4
Q ss_pred CcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCC-----CcEEEEeCCcccccCCCccccccccccCcchHH
Q 012768 2 SMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGI-----GSITVIDGSKVEVGDLGNNFMLDESCVGESKAK 76 (456)
Q Consensus 2 y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv-----~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~ 76 (456)
||-|++++|..-|+||.+.++.+||+|++|||.+||++++|+ |.|++.|.|.++.+||+|||++++.|||++|++
T Consensus 413 YD~qiavfG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQFLFR~~dVgk~KSe 492 (1013)
T KOG2012|consen 413 YDGQIAVFGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQFLFRPWDVGKPKSE 492 (1013)
T ss_pred cccchhhhchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhccccceeeccccccCchHHH
Confidence 889999999999999999999999999999999999999999 469999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCEEEEEecChhhhhcC--CcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEee
Q 012768 77 SVCAFLQELNDAVKAKFIEEYPEALIEM--NPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRIS 154 (456)
Q Consensus 77 ~~~~~l~~lnp~v~v~~~~~~~~~~~~~--~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~ 154 (456)
+++.....+||++++.+.......-++. +.+||.+.|+|..+.|+..+|..+.+.|.-+.+|++.+++.|..|.+.+.
T Consensus 493 ~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv~~~kPLLESGTlGTKGntQVv 572 (1013)
T KOG2012|consen 493 VAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYVDRRCVYYRKPLLESGTLGTKGNTQVV 572 (1013)
T ss_pred HHHHHHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchhhhhhhhhhhhhhccchhhccCcCCccceeEE
Confidence 9999999999999988876544333332 46889999999999999999999999999999999999999999999998
Q ss_pred eCCce
Q 012768 155 VKEHT 159 (456)
Q Consensus 155 ~~~~~ 159 (456)
.|-++
T Consensus 573 vPhlT 577 (1013)
T KOG2012|consen 573 VPHLT 577 (1013)
T ss_pred ecccc
Confidence 88643
No 46
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=99.91 E-value=5.4e-24 Score=197.43 Aligned_cols=142 Identities=25% Similarity=0.287 Sum_probs=118.5
Q ss_pred cccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhC
Q 012768 7 RIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELN 86 (456)
Q Consensus 7 rlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~ln 86 (456)
+-.|.++|++|++++|+|+|+||+|+++|++|+++||++++|+|.|.|+++||+||++ ..+++|++|+++++++|+++|
T Consensus 9 ~~~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~-~~~~iG~~Ka~~~~~~l~~in 87 (200)
T TIGR02354 9 ARHTPKIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQY-KASQVGEPKTEALKENISEIN 87 (200)
T ss_pred HhcCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccC-ChhhCCCHHHHHHHHHHHHHC
Confidence 4479999999999999999999999999999999999999999999999999999964 668999999999999999999
Q ss_pred CCCEEEEEecChhhhhcCC-cCCCCCCcEEEEcCCChHHHHHHH-HHHHHcCCeEEEEeeccceeeEEe
Q 012768 87 DAVKAKFIEEYPEALIEMN-PPFFSQFTLVVATQLGEEKMIKLD-RICREANVMLIFARSYGLTGFVRI 153 (456)
Q Consensus 87 p~v~v~~~~~~~~~~~~~~-~~~~~~~dvVi~~~~~~~~~~~l~-~~~~~~~ip~i~~~~~G~~G~v~~ 153 (456)
|+++++.+.... .+.+ .+++.++|+||.|.++...+..++ ..++.++.+++.+ ..|+.|+.+.
T Consensus 88 p~~~i~~~~~~i---~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~-~~g~~g~~~~ 152 (200)
T TIGR02354 88 PYTEIEAYDEKI---TEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIA-ASGLAGYDDA 152 (200)
T ss_pred CCCEEEEeeeeC---CHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEE-EeccccCCCC
Confidence 999998876533 2223 456889999999988888877755 4555555544444 3677777643
No 47
>PRK06153 hypothetical protein; Provisional
Probab=99.88 E-value=2.2e-22 Score=199.59 Aligned_cols=128 Identities=16% Similarity=0.066 Sum_probs=113.5
Q ss_pred HHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccc-cccccccCc--chHHHHHHHHHHhCCC
Q 012768 12 QGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNF-MLDESCVGE--SKAKSVCAFLQELNDA 88 (456)
Q Consensus 12 ~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f-~~~~~dvG~--~Ka~~~~~~l~~lnp~ 88 (456)
+.|++|++++|+||||||+|+.++..|+++||++|+|+|+|.|+.+||+||+ +++.+|+|+ +||+++++++.++||.
T Consensus 169 ~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~ 248 (393)
T PRK06153 169 ALSAKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRG 248 (393)
T ss_pred HHHHHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCe
Confidence 5699999999999999999999999999999999999999999999999998 568999999 9999999999999986
Q ss_pred CEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEee
Q 012768 89 VKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARS 144 (456)
Q Consensus 89 v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~ 144 (456)
+. ++.. .+.+.+.+.+.++|+||+|.|+...+..++++|.++++|||++++
T Consensus 249 I~--~~~~---~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~ 299 (393)
T PRK06153 249 IV--PHPE---YIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGM 299 (393)
T ss_pred EE--EEee---cCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeee
Confidence 54 3332 233233446789999999999999999999999999999999875
No 48
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.85 E-value=4.7e-21 Score=181.53 Aligned_cols=132 Identities=19% Similarity=0.179 Sum_probs=113.7
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCC-----C-----cEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhC
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGI-----G-----SITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELN 86 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv-----~-----~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~ln 86 (456)
-+.++|+|||+||+||+++++|+++|+ | +++|+|+|.|+++||+|| ++.++|||++||+++++++...|
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQ-lf~~~dVG~~Ka~v~~~ri~~~~ 87 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQ-AFYPADVGQNKAIVLVNRLNQAM 87 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcc-cCChhHCCcHHHHHHHHHHHhcc
Confidence 368899999999999999999999973 4 899999999999999999 56678999999999999999888
Q ss_pred CCCEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHH---cCCeEEEEeeccceeeEEeee
Q 012768 87 DAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICRE---ANVMLIFARSYGLTGFVRISV 155 (456)
Q Consensus 87 p~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~---~~ip~i~~~~~G~~G~v~~~~ 155 (456)
.++++++..... + ..++.++|+||.|.|+...|..|++.|.+ .++||+.+++.+.-|++.+-.
T Consensus 88 -~~~i~a~~~~~~---~--~~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn~~~~gqv~~g~ 153 (244)
T TIGR03736 88 -GTDWTAHPERVE---R--SSTLHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGNRADDGQVILGQ 153 (244)
T ss_pred -CceEEEEEeeeC---c--hhhhcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccCCCCCCcEEEEe
Confidence 788777654322 1 23356899999999999999999999988 248999999999999998843
No 49
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=7.1e-20 Score=172.80 Aligned_cols=139 Identities=16% Similarity=0.210 Sum_probs=123.5
Q ss_pred cccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHH
Q 012768 3 MSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFL 82 (456)
Q Consensus 3 ~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l 82 (456)
.|...++|.+||+||+++-|+||||||+|+.++-.|+|+|+++|.|+|+|.|+.+.|+||...+..|||.||+.++++++
T Consensus 58 arN~aFfGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~ 137 (430)
T KOG2018|consen 58 ARNYAFFGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHF 137 (430)
T ss_pred HhHHhhhhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHH
Confidence 36678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCEEEEEecChhhhhcCC-cCC-CCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEee
Q 012768 83 QELNDAVKAKFIEEYPEALIEMN-PPF-FSQFTLVVATQLGEEKMIKLDRICREANVMLIFARS 144 (456)
Q Consensus 83 ~~lnp~v~v~~~~~~~~~~~~~~-~~~-~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~ 144 (456)
+++.|++++.+.... .+.++ .++ +.+-|+|++|.|+......|-++|..+++++|.+..
T Consensus 138 skiaPw~eIdar~~l---~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~G 198 (430)
T KOG2018|consen 138 SKIAPWCEIDARNML---WTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISSTG 198 (430)
T ss_pred HhhCccceecHHHhh---cCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEeccC
Confidence 999999998875532 22223 233 346899999999999999999999999999987643
No 50
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=99.69 E-value=1.5e-16 Score=148.19 Aligned_cols=157 Identities=20% Similarity=0.270 Sum_probs=129.9
Q ss_pred Ccccccc--cC-HHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHH
Q 012768 2 SMSTLRI--WG-EQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSV 78 (456)
Q Consensus 2 y~RQlrl--wG-~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~ 78 (456)
|||-+.| +| ...-+|++...|.|+|.||+|+-+|..|.|.|||++.|+|.|.|+..|.+|- ||++...|.+|++++
T Consensus 62 YSRLMALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRL-Ff~P~QaGlsKv~AA 140 (422)
T KOG2336|consen 62 YSRLMALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRL-FFQPDQAGLSKVDAA 140 (422)
T ss_pred HHHHHHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhccccc-ccCcccccchHHHHH
Confidence 6666655 45 3456899999999999999999999999999999999999999999999997 678889999999999
Q ss_pred HHHHHHhCCCCEEEEEecChhh------hhc--CCcCC--CCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeec--c
Q 012768 79 CAFLQELNDAVKAKFIEEYPEA------LIE--MNPPF--FSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSY--G 146 (456)
Q Consensus 79 ~~~l~~lnp~v~v~~~~~~~~~------~~~--~~~~~--~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~--G 146 (456)
...|.++||+|.+++.+-+... +.+ .+-.+ =+..|+|+.|.++.++|..+|..|-..+.-|+..++. .
T Consensus 141 ~~TL~~iNPDV~iE~hn~NITTvenFd~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACNE~~q~WmESGVSEnA 220 (422)
T KOG2336|consen 141 VQTLAEINPDVVIEVHNYNITTVENFDTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACNELNQTWMESGVSENA 220 (422)
T ss_pred HHHHHhcCCCeEEEEeecceeeehhHHHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHHHhhhHHHHccCcccc
Confidence 9999999999998876543211 111 11112 2358999999999999999999999999888887664 6
Q ss_pred ceeeEEeeeCCce
Q 012768 147 LTGFVRISVKEHT 159 (456)
Q Consensus 147 ~~G~v~~~~~~~~ 159 (456)
..|++.+..|+.+
T Consensus 221 VSGHIQ~i~PGet 233 (422)
T KOG2336|consen 221 VSGHIQLIVPGET 233 (422)
T ss_pred ccceeEEecCCcc
Confidence 7899999888733
No 51
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=99.47 E-value=7e-14 Score=140.24 Aligned_cols=145 Identities=17% Similarity=0.200 Sum_probs=117.9
Q ss_pred HHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCcccccccccc---CcchHHHHHHHHHHhCCC
Q 012768 12 QGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCV---GESKAKSVCAFLQELNDA 88 (456)
Q Consensus 12 ~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dv---G~~Ka~~~~~~l~~lnp~ 88 (456)
-..+++.+.++|++|+|.+||.||+||+-.||++||++|..+|..+|-.||.+++-+|. |++||++++++|++++|.
T Consensus 333 LnLd~is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~IfP~ 412 (669)
T KOG2337|consen 333 LNLDIISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKEIFPS 412 (669)
T ss_pred cchhhhhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHHhCcc
Confidence 34578999999999999999999999999999999999999999999999999998886 599999999999999998
Q ss_pred CEEEEEecC---hh-hhhc-----------CCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEe
Q 012768 89 VKAKFIEEY---PE-ALIE-----------MNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRI 153 (456)
Q Consensus 89 v~v~~~~~~---~~-~~~~-----------~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~ 153 (456)
++-+-+... |. .+.+ .-..++++.|+|+..+|+.+.|..-.-+|..+++-.|.+ ..||..|+..
T Consensus 413 m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESRWLPtll~a~~~KivINa-ALGFDsylVM 491 (669)
T KOG2337|consen 413 MEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESRWLPTLLAAAKNKIVINA-ALGFDSYLVM 491 (669)
T ss_pred ccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhhhhHHHHHhhhcceEeee-ecccceeEEE
Confidence 864432210 00 0110 013457889999999999888877666777777766665 6899999998
Q ss_pred eeCC
Q 012768 154 SVKE 157 (456)
Q Consensus 154 ~~~~ 157 (456)
..|.
T Consensus 492 RHG~ 495 (669)
T KOG2337|consen 492 RHGT 495 (669)
T ss_pred ecCC
Confidence 8765
No 52
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.24 E-value=2.3e-11 Score=126.82 Aligned_cols=127 Identities=17% Similarity=0.144 Sum_probs=101.2
Q ss_pred CHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCC
Q 012768 10 GEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAV 89 (456)
Q Consensus 10 G~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v 89 (456)
|.+.-++.++++|+|+|.||+|+.++.+|+.+|+++|..+|.|.+ .+|++| ||+. ++.+++ .||.+
T Consensus 120 ~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR--------IgEl-~e~A~~----~n~~v 185 (637)
T TIGR03693 120 GALKFELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR--------IHEL-AEIAEE----TDDAL 185 (637)
T ss_pred chhhhhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH--------HHHH-HHHHHH----hCCCC
Confidence 445666779999999999999999999999999999999999999 999998 6765 554443 99999
Q ss_pred EEEEEecChhhhhcCCcCCCCCCcEEEEcCC--ChHHHHHHHHHHHHcC---CeEEEEeeccceeeEEe
Q 012768 90 KAKFIEEYPEALIEMNPPFFSQFTLVVATQL--GEEKMIKLDRICREAN---VMLIFARSYGLTGFVRI 153 (456)
Q Consensus 90 ~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~--~~~~~~~l~~~~~~~~---ip~i~~~~~G~~G~v~~ 153 (456)
.++.++.. ....-.+.++++|+||+..+ ......++|..|.+.+ +|++.++..++.|-+|.
T Consensus 186 ~v~~i~~~---~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~~G~~~liGPlft 251 (637)
T TIGR03693 186 LVQEIDFA---EDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAICLKQVGLAGPVFQ 251 (637)
T ss_pred ceEeccCC---cchhHHHhhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEEcccceeecceEC
Confidence 99887641 11112466889999997655 3456889999999999 67777777777777666
No 53
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=98.69 E-value=9.2e-08 Score=83.07 Aligned_cols=123 Identities=24% Similarity=0.320 Sum_probs=94.1
Q ss_pred cCcEEEEcCChhHHHHHHHHH---HcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEe
Q 012768 19 KASVCLLNCGPTGSETLKNLV---LGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE 95 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLv---l~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~ 95 (456)
+..|.++|||-+|.-++-+|. +-|+.+|.++|.+.|++.|+-- ..-...+|.+|++-++ +|....+.=+|+.
T Consensus 18 rGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiih--rr~Ga~~GEyKv~Fi~-rl~~~~f~r~V~a-- 92 (217)
T COG4015 18 RGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIH--RRLGAKVGEYKVDFIK-RLGRVHFGRRVEA-- 92 (217)
T ss_pred CceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHH--HHhCCCcchhHHHHHH-HhCcCCCCceeec--
Confidence 456999999999999999997 7899999999999999999862 2334568999997663 4444555556555
Q ss_pred cChhhhhcCCcCCCCCCcEEEEc---CCChHHHHHHHHHHHHcCCeEEEEeeccceee
Q 012768 96 EYPEALIEMNPPFFSQFTLVVAT---QLGEEKMIKLDRICREANVMLIFARSYGLTGF 150 (456)
Q Consensus 96 ~~~~~~~~~~~~~~~~~dvVi~~---~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~ 150 (456)
.++.++.+|...+.+ |+|+.| .+..+....|.++|++.++.-| ++.|.||+
T Consensus 93 -~pE~it~dNlhll~g-DVvvi~IAGGdT~PvTaaii~ya~~rG~~Ti--sT~GVFGi 146 (217)
T COG4015 93 -FPENITKDNLHLLKG-DVVVICIAGGDTIPVTAAIINYAKERGIKTI--STNGVFGI 146 (217)
T ss_pred -ccccccccchhhhcC-CEEEEEecCCCcchhHHHHHHHHHHcCceEe--ecCceeec
Confidence 455666677777766 777654 3566778899999999998655 66788885
No 54
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.69 E-value=0.00042 Score=64.60 Aligned_cols=94 Identities=17% Similarity=0.179 Sum_probs=63.7
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEe
Q 012768 16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE 95 (456)
Q Consensus 16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~ 95 (456)
.|++.+|+|||.|.+|...++.|...| .++|+++++. . +.+.++.+.-.+....
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~~------~-------------------~~l~~l~~~~~i~~~~ 60 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPEL------T-------------------ENLVKLVEEGKIRWKQ 60 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCC------C-------------------HHHHHHHhCCCEEEEe
Confidence 478899999999999999999999999 6899996431 1 1222222222223222
Q ss_pred cChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEE
Q 012768 96 EYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFA 142 (456)
Q Consensus 96 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~ 142 (456)
. .+ ....+.++|+||+++++.+.-..+.+.|. .++++-.+
T Consensus 61 ~---~~---~~~~l~~adlViaaT~d~elN~~i~~~a~-~~~lvn~~ 100 (202)
T PRK06718 61 K---EF---EPSDIVDAFLVIAATNDPRVNEQVKEDLP-ENALFNVI 100 (202)
T ss_pred c---CC---ChhhcCCceEEEEcCCCHHHHHHHHHHHH-hCCcEEEC
Confidence 1 11 23346789999998888787788888994 46654444
No 55
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.58 E-value=0.00014 Score=63.28 Aligned_cols=77 Identities=16% Similarity=0.226 Sum_probs=55.1
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEe
Q 012768 16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE 95 (456)
Q Consensus 16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~ 95 (456)
.+++++|+|+|+||.|..+++.|...|++++++++ |+ ..|++.+++.+ +...+....
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~n----------Rt---------~~ra~~l~~~~----~~~~~~~~~ 65 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVN----------RT---------PERAEALAEEF----GGVNIEAIP 65 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEE----------SS---------HHHHHHHHHHH----TGCSEEEEE
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEE----------CC---------HHHHHHHHHHc----Cccccceee
Confidence 68999999999999999999999999999999986 22 23666666655 444444433
Q ss_pred cChhhhhcCCcCCCCCCcEEEEcCCC
Q 012768 96 EYPEALIEMNPPFFSQFTLVVATQLG 121 (456)
Q Consensus 96 ~~~~~~~~~~~~~~~~~dvVi~~~~~ 121 (456)
.. ++ .+.+.++|+||.|+..
T Consensus 66 ~~--~~----~~~~~~~DivI~aT~~ 85 (135)
T PF01488_consen 66 LE--DL----EEALQEADIVINATPS 85 (135)
T ss_dssp GG--GH----CHHHHTESEEEE-SST
T ss_pred HH--HH----HHHHhhCCeEEEecCC
Confidence 21 11 1345689999977644
No 56
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.57 E-value=0.00024 Score=69.78 Aligned_cols=76 Identities=18% Similarity=0.192 Sum_probs=58.3
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE 96 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~ 96 (456)
++.++|+|+|+||+|..++..|+..|+++++|+|.+ ..|++.+++.+.+.++.+.+....
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~-------------------~~ka~~la~~l~~~~~~~~~~~~~- 184 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD-------------------PARAAALADELNARFPAARATAGS- 184 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC-------------------HHHHHHHHHHHHhhCCCeEEEecc-
Confidence 556789999999999999999999999999999854 258888888888777765443221
Q ss_pred ChhhhhcCCcCCCCCCcEEEEcC
Q 012768 97 YPEALIEMNPPFFSQFTLVVATQ 119 (456)
Q Consensus 97 ~~~~~~~~~~~~~~~~dvVi~~~ 119 (456)
.+ .+.+.++|+||.|+
T Consensus 185 ---~~----~~~~~~aDiVInaT 200 (284)
T PRK12549 185 ---DL----AAALAAADGLVHAT 200 (284)
T ss_pred ---ch----HhhhCCCCEEEECC
Confidence 11 12346789999775
No 57
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.53 E-value=0.00029 Score=71.40 Aligned_cols=99 Identities=22% Similarity=0.331 Sum_probs=67.3
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhC-CCCEEEEEecCh
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELN-DAVKAKFIEEYP 98 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~ln-p~v~v~~~~~~~ 98 (456)
.+|+|+|+|++|+.+|.+|+..|.+.|++.|... ..++++.+.. +.++...++...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~-----------------------~~~~~i~~~~~~~v~~~~vD~~d 58 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK-----------------------EKCARIAELIGGKVEALQVDAAD 58 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH-----------------------HHHHHHHhhccccceeEEecccC
Confidence 5899999999999999999999999999998322 1223333332 233333333221
Q ss_pred hhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeec
Q 012768 99 EALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSY 145 (456)
Q Consensus 99 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~ 145 (456)
. +...+.++++|+||.+..+.- -..+.+.|.+.++++++....
T Consensus 59 --~-~al~~li~~~d~VIn~~p~~~-~~~i~ka~i~~gv~yvDts~~ 101 (389)
T COG1748 59 --V-DALVALIKDFDLVINAAPPFV-DLTILKACIKTGVDYVDTSYY 101 (389)
T ss_pred --h-HHHHHHHhcCCEEEEeCCchh-hHHHHHHHHHhCCCEEEcccC
Confidence 1 011356788999998876543 347888999999998877543
No 58
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.52 E-value=0.00084 Score=62.68 Aligned_cols=101 Identities=18% Similarity=0.188 Sum_probs=70.0
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE 96 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~ 96 (456)
|++.+|+|||.|.+|..-++.|...|. ++|+++++.- ..+ +.+.+. -+++.+..
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~---------------------~~l-~~l~~~---~~i~~~~~ 60 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELE---------------------SEL-TLLAEQ---GGITWLAR 60 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCC---------------------HHH-HHHHHc---CCEEEEeC
Confidence 778899999999999999999999996 7999986431 001 112221 13444333
Q ss_pred ChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeecccee
Q 012768 97 YPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTG 149 (456)
Q Consensus 97 ~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G 149 (456)
.. ..+.+.++++||++++..+....+...|++.++++-.++.-....
T Consensus 61 ~~------~~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~ 107 (205)
T TIGR01470 61 CF------DADILEGAFLVIAATDDEELNRRVAHAARARGVPVNVVDDPELCS 107 (205)
T ss_pred CC------CHHHhCCcEEEEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe
Confidence 21 123467899999888776777789999999999976555444433
No 59
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.20 E-value=0.0048 Score=55.07 Aligned_cols=89 Identities=12% Similarity=0.140 Sum_probs=61.7
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEe
Q 012768 16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE 95 (456)
Q Consensus 16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~ 95 (456)
.|++.+|+|+|.|.+|...++.|...|. .+++++++.. +.+.++ +.+. ...
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~~~-------------------------~~l~~l-~~i~--~~~ 60 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPEIC-------------------------KEMKEL-PYIT--WKQ 60 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCccC-------------------------HHHHhc-cCcE--EEe
Confidence 5789999999999999999999999997 6889865432 112222 1222 211
Q ss_pred cChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEE
Q 012768 96 EYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLI 140 (456)
Q Consensus 96 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i 140 (456)
..+ .+..+.++|+||+++++.+.-..+...|++. .++-
T Consensus 61 ---~~~---~~~dl~~a~lViaaT~d~e~N~~i~~~a~~~-~~vn 98 (157)
T PRK06719 61 ---KTF---SNDDIKDAHLIYAATNQHAVNMMVKQAAHDF-QWVN 98 (157)
T ss_pred ---ccc---ChhcCCCceEEEECCCCHHHHHHHHHHHHHC-CcEE
Confidence 112 2334678999999988877777888888774 4433
No 60
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.15 E-value=0.0017 Score=53.63 Aligned_cols=88 Identities=17% Similarity=0.193 Sum_probs=62.1
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEe
Q 012768 16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE 95 (456)
Q Consensus 16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~ 95 (456)
.|++.+|+|||.|.+|..-++.|..+| .++|++.++. +.. + ..++.. .
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~-~~~-------------------------~---~~i~~~--~ 51 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI-EFS-------------------------E---GLIQLI--R 51 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE-HHH-------------------------H---TSCEEE--E
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch-hhh-------------------------h---hHHHHH--h
Confidence 478999999999999999999999999 6899998664 000 0 223322 1
Q ss_pred cChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEE
Q 012768 96 EYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFA 142 (456)
Q Consensus 96 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~ 142 (456)
.. + .+.+.++++|++++++......+.+.|++.++|+-.+
T Consensus 52 ~~---~----~~~l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 52 RE---F----EEDLDGADLVFAATDDPELNEAIYADARARGILVNVV 91 (103)
T ss_dssp SS--------GGGCTTESEEEE-SS-HHHHHHHHHHHHHTTSEEEET
T ss_pred hh---H----HHHHhhheEEEecCCCHHHHHHHHHHHhhCCEEEEEC
Confidence 11 1 1346789999999888888889999999999985544
No 61
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=97.04 E-value=0.0077 Score=56.75 Aligned_cols=96 Identities=17% Similarity=0.209 Sum_probs=68.3
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHh--CCCCEEEE
Q 012768 16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQEL--NDAVKAKF 93 (456)
Q Consensus 16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~l--np~v~v~~ 93 (456)
.+++.+|+|||.|.+|..=++.|..+|. ++|++-++.. ..+.++ ++.++ +
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA-~VtVVap~i~-------------------------~el~~l~~~~~i~--~ 73 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGC-YVYILSKKFS-------------------------KEFLDLKKYGNLK--L 73 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCCC-------------------------HHHHHHHhCCCEE--E
Confidence 4568899999999999999999999994 5999865531 111112 23333 3
Q ss_pred EecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeec
Q 012768 94 IEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSY 145 (456)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~ 145 (456)
+... + .++.+.++++||+++++...-..+...|+..++++..+..-
T Consensus 74 ~~r~---~---~~~dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~p 119 (223)
T PRK05562 74 IKGN---Y---DKEFIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDCSDY 119 (223)
T ss_pred EeCC---C---ChHHhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEcCCc
Confidence 3321 1 23346789999999888888889999999999987766443
No 62
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.58 E-value=0.019 Score=54.47 Aligned_cols=98 Identities=18% Similarity=0.202 Sum_probs=58.6
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec-Ch
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE-YP 98 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~-~~ 98 (456)
.+++|+|+|-+|..+|++|+..|-. ++++|.|.- + +.+.+.+- ..+.+...+. ++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~-Vv~Id~d~~-------------------~---~~~~~~~~-~~~~~v~gd~t~~ 56 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHN-VVLIDRDEE-------------------R---VEEFLADE-LDTHVVIGDATDE 56 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCc-eEEEEcCHH-------------------H---HHHHhhhh-cceEEEEecCCCH
Confidence 3789999999999999999999976 666664431 1 11212211 1222222222 22
Q ss_pred hhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHH-cCCeEEEEee
Q 012768 99 EALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICRE-ANVMLIFARS 144 (456)
Q Consensus 99 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~-~~ip~i~~~~ 144 (456)
..+. ..-+.++|++|+++.+...-..+...+.+ +++|-+.+..
T Consensus 57 ~~L~---~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~ 100 (225)
T COG0569 57 DVLE---EAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARA 100 (225)
T ss_pred HHHH---hcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEe
Confidence 2221 12356899999777665554555555544 7999887754
No 63
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.44 E-value=0.0043 Score=63.41 Aligned_cols=74 Identities=19% Similarity=0.267 Sum_probs=54.5
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEe
Q 012768 16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE 95 (456)
Q Consensus 16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~ 95 (456)
.|..++|+|||+|-+|.-+|++|...|++.|+|. ||+ ..||+.+++.+. .++...+
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~Ia----------NRT---------~erA~~La~~~~-----~~~~~l~ 230 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIA----------NRT---------LERAEELAKKLG-----AEAVALE 230 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEE----------cCC---------HHHHHHHHHHhC-----CeeecHH
Confidence 3788999999999999999999999999999997 343 246776666665 2222211
Q ss_pred cChhhhhcCCcCCCCCCcEEEEcCCC
Q 012768 96 EYPEALIEMNPPFFSQFTLVVATQLG 121 (456)
Q Consensus 96 ~~~~~~~~~~~~~~~~~dvVi~~~~~ 121 (456)
+..+++.++|+||.++..
T Consensus 231 --------el~~~l~~~DvVissTsa 248 (414)
T COG0373 231 --------ELLEALAEADVVISSTSA 248 (414)
T ss_pred --------HHHHhhhhCCEEEEecCC
Confidence 123567799999976644
No 64
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.41 E-value=0.0076 Score=59.15 Aligned_cols=77 Identities=17% Similarity=0.139 Sum_probs=51.9
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE 96 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~ 96 (456)
++.++|+|+|+||.|..++..|...|+++++|++.+ ..|++.+++.+.... . +.....
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt-------------------~~ka~~La~~~~~~~-~--~~~~~~ 180 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN-------------------PDKLSRLVDLGVQVG-V--ITRLEG 180 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC-------------------HHHHHHHHHHhhhcC-c--ceeccc
Confidence 457789999999999999999999999999999632 137777776654321 1 111110
Q ss_pred ChhhhhcCCcCCCCCCcEEEEcCC
Q 012768 97 YPEALIEMNPPFFSQFTLVVATQL 120 (456)
Q Consensus 97 ~~~~~~~~~~~~~~~~dvVi~~~~ 120 (456)
...+ ...+.++|+||.|+.
T Consensus 181 -~~~~----~~~~~~~DiVInaTp 199 (282)
T TIGR01809 181 -DSGG----LAIEKAAEVLVSTVP 199 (282)
T ss_pred -hhhh----hhcccCCCEEEECCC
Confidence 0111 123457999997764
No 65
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.38 E-value=0.013 Score=57.72 Aligned_cols=84 Identities=10% Similarity=0.084 Sum_probs=54.0
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE 96 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~ 96 (456)
+++++|+|+|+||+|..++..|+..|++++++++.+.- ...|++.+++.+.+..+.+.+...+.
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~----------------~~~~a~~l~~~l~~~~~~~~~~~~d~ 187 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD----------------FYERAEQTAEKIKQEVPECIVNVYDL 187 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch----------------HHHHHHHHHHHHhhcCCCceeEEech
Confidence 45678999999999999999999999999999873210 01366666666665555544433221
Q ss_pred ChhhhhcCCcCCCCCCcEEEEcC
Q 012768 97 YPEALIEMNPPFFSQFTLVVATQ 119 (456)
Q Consensus 97 ~~~~~~~~~~~~~~~~dvVi~~~ 119 (456)
. .. +.-.+.+..+|+||.|+
T Consensus 188 ~--~~-~~~~~~~~~~DilINaT 207 (289)
T PRK12548 188 N--DT-EKLKAEIASSDILVNAT 207 (289)
T ss_pred h--hh-hHHHhhhccCCEEEEeC
Confidence 1 00 00012344668888654
No 66
>PRK04148 hypothetical protein; Provisional
Probab=96.37 E-value=0.02 Score=49.52 Aligned_cols=94 Identities=17% Similarity=0.208 Sum_probs=67.4
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecC
Q 012768 18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY 97 (456)
Q Consensus 18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~ 97 (456)
++.+|++||+| .|..+|..|...|. .++.+|-+. ..++ ..++. .+. ++..
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~-------------------~aV~----~a~~~--~~~--~v~d- 65 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINE-------------------KAVE----KAKKL--GLN--AFVD- 65 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCH-------------------HHHH----HHHHh--CCe--EEEC-
Confidence 34679999999 99999999999996 688888322 1222 22222 122 2221
Q ss_pred hhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEe
Q 012768 98 PEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFAR 143 (456)
Q Consensus 98 ~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~ 143 (456)
++.+-+.++.+++|+|.....+.+....+-+++++.+.+++..-
T Consensus 66 --Dlf~p~~~~y~~a~liysirpp~el~~~~~~la~~~~~~~~i~~ 109 (134)
T PRK04148 66 --DLFNPNLEIYKNAKLIYSIRPPRDLQPFILELAKKINVPLIIKP 109 (134)
T ss_pred --cCCCCCHHHHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 23334556678999999999998888899999999999987654
No 67
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=96.33 E-value=0.023 Score=52.52 Aligned_cols=85 Identities=14% Similarity=0.223 Sum_probs=68.6
Q ss_pred CHHHHHHHhcCcEEEEcCChhHHH-HHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCC
Q 012768 10 GEQGQAALEKASVCLLNCGPTGSE-TLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDA 88 (456)
Q Consensus 10 G~~~q~~L~~~~VlIiG~gglG~e-iaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~ 88 (456)
+.+.+++|++++|.|+|.|+.|+. ++..|..+||+.+.
T Consensus 96 ~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~----------------------------------------- 134 (193)
T TIGR03882 96 PAAALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAP----------------------------------------- 134 (193)
T ss_pred HHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccC-----------------------------------------
Confidence 356789999999999999999988 99999999998654
Q ss_pred CEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEee
Q 012768 89 VKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRIS 154 (456)
Q Consensus 89 v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~ 154 (456)
. . .+.++|++.+........+|+...+.+.||+.+...|..+.+--.
T Consensus 135 ------~-~------------a~l~vVl~~Dyl~p~L~~~n~~~l~~~~~~l~v~~~~~~~~~gp~ 181 (193)
T TIGR03882 135 ------S-E------------ADLTVVLTDDYLDPELAAINQRALAAGRPWLLVKPGGVQPWIGPL 181 (193)
T ss_pred ------C-C------------CCEEEEEeCCCCChHHHHHHHHHHHcCCceEEEEeCCceEEECCe
Confidence 0 0 024567666766677889999999999999999998888776553
No 68
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=96.25 E-value=0.011 Score=57.91 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=52.6
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE 96 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~ 96 (456)
++.++|+|+|+||.|..++-.|+..|+++++|+|.+. .|++.+++.+.+..+...+....
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~-------------------~ka~~La~~~~~~~~~~~~~~~~- 184 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT-------------------SRAQALADVINNAVGREAVVGVD- 184 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH-------------------HHHHHHHHHHhhccCcceEEecC-
Confidence 4567899999999999999999999999999997432 37877777765444432222211
Q ss_pred ChhhhhcCCcCCCCCCcEEEEcC
Q 012768 97 YPEALIEMNPPFFSQFTLVVATQ 119 (456)
Q Consensus 97 ~~~~~~~~~~~~~~~~dvVi~~~ 119 (456)
...+ .+.+..+|+||.|+
T Consensus 185 -~~~~----~~~~~~~divINaT 202 (283)
T PRK14027 185 -ARGI----EDVIAAADGVVNAT 202 (283)
T ss_pred -HhHH----HHHHhhcCEEEEcC
Confidence 1010 11234688888665
No 69
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.23 E-value=0.0098 Score=60.99 Aligned_cols=95 Identities=23% Similarity=0.208 Sum_probs=60.2
Q ss_pred EEEEcCChhHHHHHHHHHHcCCC-cEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChhh
Q 012768 22 VCLLNCGPTGSETLKNLVLGGIG-SITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEA 100 (456)
Q Consensus 22 VlIiG~gglG~eiaknLvl~Gv~-~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~~ 100 (456)
|+|+|+|.+|+.+++.|+..+-. ++++.|.+. .|++.+++.+ ....++....+.. +
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~-------------------~~~~~~~~~~--~~~~~~~~~~d~~--~ 57 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNP-------------------EKAERLAEKL--LGDRVEAVQVDVN--D 57 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSH-------------------HHHHHHHT----TTTTEEEEE--TT--T
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCH-------------------HHHHHHHhhc--cccceeEEEEecC--C
Confidence 78999999999999999999855 899987332 2343333332 3334444433322 1
Q ss_pred hhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEE
Q 012768 101 LIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIF 141 (456)
Q Consensus 101 ~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~ 141 (456)
..+ -.++++++|+||.|..+. ....+.+.|.+.++++++
T Consensus 58 ~~~-l~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD 96 (386)
T PF03435_consen 58 PES-LAELLRGCDVVINCAGPF-FGEPVARACIEAGVHYVD 96 (386)
T ss_dssp HHH-HHHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEE
T ss_pred HHH-HHHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCeec
Confidence 110 134578899999887665 566889999999999887
No 70
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.19 E-value=0.017 Score=56.43 Aligned_cols=75 Identities=20% Similarity=0.281 Sum_probs=54.1
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecC
Q 012768 18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY 97 (456)
Q Consensus 18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~ 97 (456)
+..+|+|+|+||.+..++..|...|+.+|+|++.+ ..|++.+++.+.+..+.+......
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt-------------------~~ra~~La~~~~~~~~~~~~~~~~-- 183 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNRT-------------------RERAEELADLFGELGAAVEAAALA-- 183 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhccccccccccc--
Confidence 35889999999999999999999999999998522 257888888888877633322111
Q ss_pred hhhhhcCCcCCCCCCcEEEEcCC
Q 012768 98 PEALIEMNPPFFSQFTLVVATQL 120 (456)
Q Consensus 98 ~~~~~~~~~~~~~~~dvVi~~~~ 120 (456)
..+...++|+||.|+.
T Consensus 184 -------~~~~~~~~dliINaTp 199 (283)
T COG0169 184 -------DLEGLEEADLLINATP 199 (283)
T ss_pred -------ccccccccCEEEECCC
Confidence 0111116899997653
No 71
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.18 E-value=0.012 Score=51.45 Aligned_cols=74 Identities=22% Similarity=0.239 Sum_probs=51.5
Q ss_pred CcEEEEcC-ChhHHHHHHHHHHcCCCc-EEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCC--EEEEEe
Q 012768 20 ASVCLLNC-GPTGSETLKNLVLGGIGS-ITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAV--KAKFIE 95 (456)
Q Consensus 20 ~~VlIiG~-gglG~eiaknLvl~Gv~~-itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v--~v~~~~ 95 (456)
.||+|+|+ |.+|+.+|-.|+..|+.+ +.|+|.+ ..|++..+.-|....+.. .+....
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~-------------------~~~~~g~a~Dl~~~~~~~~~~~~i~~ 61 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN-------------------EDKAEGEALDLSHASAPLPSPVRITS 61 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS-------------------HHHHHHHHHHHHHHHHGSTEEEEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccC-------------------cccceeeehhhhhhhhhccccccccc
Confidence 37999999 999999999999999966 9999832 235666555565543322 322222
Q ss_pred cChhhhhcCCcCCCCCCcEEEEcCC
Q 012768 96 EYPEALIEMNPPFFSQFTLVVATQL 120 (456)
Q Consensus 96 ~~~~~~~~~~~~~~~~~dvVi~~~~ 120 (456)
...+.+++.|+||.+..
T Consensus 62 --------~~~~~~~~aDivvitag 78 (141)
T PF00056_consen 62 --------GDYEALKDADIVVITAG 78 (141)
T ss_dssp --------SSGGGGTTESEEEETTS
T ss_pred --------ccccccccccEEEEecc
Confidence 13345779999998753
No 72
>PRK10637 cysG siroheme synthase; Provisional
Probab=96.08 E-value=0.046 Score=57.48 Aligned_cols=104 Identities=13% Similarity=0.154 Sum_probs=71.6
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEe
Q 012768 16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE 95 (456)
Q Consensus 16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~ 95 (456)
.|++.+|+|||.|.++..=++.|..+|. ++|++-++.- ..+.++-..-+++.+.
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga-~v~visp~~~-------------------------~~~~~l~~~~~i~~~~ 62 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGA-RLTVNALAFI-------------------------PQFTAWADAGMLTLVE 62 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCCC-------------------------HHHHHHHhCCCEEEEe
Confidence 5789999999999999999999999996 6898854321 1122222222333333
Q ss_pred cChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeE
Q 012768 96 EYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFV 151 (456)
Q Consensus 96 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v 151 (456)
.. + ..+.+.++++||+++++.+.-..+.+.|+..++++-.++.-....++
T Consensus 63 ~~---~---~~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~~lvN~~d~~~~~~f~ 112 (457)
T PRK10637 63 GP---F---DESLLDTCWLAIAATDDDAVNQRVSEAAEARRIFCNVVDAPKAASFI 112 (457)
T ss_pred CC---C---ChHHhCCCEEEEECCCCHHHhHHHHHHHHHcCcEEEECCCcccCeEE
Confidence 22 1 23346789999999888888889999999999986666544433333
No 73
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.94 E-value=0.031 Score=52.31 Aligned_cols=100 Identities=22% Similarity=0.269 Sum_probs=67.8
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEe
Q 012768 16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE 95 (456)
Q Consensus 16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~ 95 (456)
.|.+++|+|||.|.+|..=++.|..+|.. ++++-++. ++ .+ ..+.+-++ +..+.
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga~-v~Vvs~~~-~~--------------------el-~~~~~~~~---i~~~~ 62 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGAD-VTVVSPEF-EP--------------------EL-KALIEEGK---IKWIE 62 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCCE-EEEEcCCc-cH--------------------HH-HHHHHhcC---cchhh
Confidence 47789999999999999999999999985 77765433 11 11 11222222 22222
Q ss_pred cChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccc
Q 012768 96 EYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGL 147 (456)
Q Consensus 96 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~ 147 (456)
. .+ ..+.+.++++||.++++...-..+...|+++++|+-.++--.+
T Consensus 63 ~---~~---~~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~D~p~~ 108 (210)
T COG1648 63 R---EF---DAEDLDDAFLVIAATDDEELNERIAKAARERRILVNVVDDPEL 108 (210)
T ss_pred c---cc---ChhhhcCceEEEEeCCCHHHHHHHHHHHHHhCCceeccCCccc
Confidence 1 11 2334556889998888888888999999999998666654443
No 74
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=95.89 E-value=0.027 Score=55.13 Aligned_cols=74 Identities=15% Similarity=0.299 Sum_probs=51.5
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE 96 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~ 96 (456)
+.+++|+|+|+||+|..+++.|...|+.++++++.+ ..|++.+++.+....+ +.+ ..
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~-------------------~~~a~~l~~~~~~~~~-~~~---~~ 177 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRT-------------------VERAEELAKLFGALGK-AEL---DL 177 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhccc-eee---cc
Confidence 567899999999999999999999999999999732 1356666665543321 221 10
Q ss_pred ChhhhhcCCcCCCCCCcEEEEcCC
Q 012768 97 YPEALIEMNPPFFSQFTLVVATQL 120 (456)
Q Consensus 97 ~~~~~~~~~~~~~~~~dvVi~~~~ 120 (456)
...+.+.++|+||.|+.
T Consensus 178 -------~~~~~~~~~DivInaTp 194 (278)
T PRK00258 178 -------ELQEELADFDLIINATS 194 (278)
T ss_pred -------cchhccccCCEEEECCc
Confidence 01234568999997763
No 75
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=95.87 E-value=0.013 Score=60.66 Aligned_cols=35 Identities=14% Similarity=0.278 Sum_probs=32.5
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768 16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD 50 (456)
.+.+.+|+|+|+|+.|..++++|...|+.+|+++.
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~n 212 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLAN 212 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEC
Confidence 36788999999999999999999999999999984
No 76
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.83 E-value=0.035 Score=54.66 Aligned_cols=83 Identities=11% Similarity=0.102 Sum_probs=52.7
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE 96 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~ 96 (456)
+++++|+|+|+||.+..++-.|+..|+++++|++.+. -...|++.+++.+....+ ..+.....
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~----------------~~~~ka~~la~~~~~~~~-~~~~~~~~ 184 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD----------------EFFDKALAFAQRVNENTD-CVVTVTDL 184 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc----------------cHHHHHHHHHHHhhhccC-ceEEEech
Confidence 4667999999999999999999999999999997321 013477777776654322 22222211
Q ss_pred ChhhhhcCCcCCCCCCcEEEEcC
Q 012768 97 YPEALIEMNPPFFSQFTLVVATQ 119 (456)
Q Consensus 97 ~~~~~~~~~~~~~~~~dvVi~~~ 119 (456)
. .. ..-.+.+.++|+||.|+
T Consensus 185 ~--~~-~~l~~~~~~aDivINaT 204 (288)
T PRK12749 185 A--DQ-QAFAEALASADILTNGT 204 (288)
T ss_pred h--hh-hhhhhhcccCCEEEECC
Confidence 0 00 00011245789998765
No 77
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.63 E-value=0.036 Score=55.25 Aligned_cols=74 Identities=26% Similarity=0.225 Sum_probs=51.6
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCC-EEEEEec
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIG-SITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAV-KAKFIEE 96 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~-~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v-~v~~~~~ 96 (456)
..+|.|+|+|.+|+.+|-.|+..|+. .+.|+|- ...|++..+.-|....|.. .+.....
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~-------------------~~~~~~g~~~Dl~~~~~~~~~~~i~~~ 66 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDI-------------------NKEKAEGDAMDLSHAVPFTSPTKIYAG 66 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CCchhHHHHHHHHhhccccCCeEEEeC
Confidence 46999999999999999999999996 6999982 2345666666666665432 2222111
Q ss_pred ChhhhhcCCcCCCCCCcEEEEcC
Q 012768 97 YPEALIEMNPPFFSQFTLVVATQ 119 (456)
Q Consensus 97 ~~~~~~~~~~~~~~~~dvVi~~~ 119 (456)
+.+.++++|+||.+.
T Consensus 67 --------~~~~~~~adivIita 81 (315)
T PRK00066 67 --------DYSDCKDADLVVITA 81 (315)
T ss_pred --------CHHHhCCCCEEEEec
Confidence 223367999999764
No 78
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=95.61 E-value=0.0063 Score=54.58 Aligned_cols=117 Identities=20% Similarity=0.190 Sum_probs=65.2
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecCh-
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP- 98 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~- 98 (456)
.+|.+||+|..|+.+|+||..+|.. ++++|.+.-....+.. .|-..++...+..++. ++-+..+....
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~-v~~~d~~~~~~~~~~~--------~g~~~~~s~~e~~~~~--dvvi~~v~~~~~ 70 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYE-VTVYDRSPEKAEALAE--------AGAEVADSPAEAAEQA--DVVILCVPDDDA 70 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTE-EEEEESSHHHHHHHHH--------TTEEEESSHHHHHHHB--SEEEE-SSSHHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCe-EEeeccchhhhhhhHH--------hhhhhhhhhhhHhhcc--cceEeecccchh
Confidence 4799999999999999999999985 8888844311111111 1111122222333322 34333332211
Q ss_pred -hhhhcC-C-cCCCCCCcEEEE-cCCChHHHHHHHHHHHHcCCeEEEEeeccc
Q 012768 99 -EALIEM-N-PPFFSQFTLVVA-TQLGEEKMIKLDRICREANVMLIFARSYGL 147 (456)
Q Consensus 99 -~~~~~~-~-~~~~~~~dvVi~-~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~ 147 (456)
..+... + ...+..=+++|+ ++.+......+.+.+...++.++.+...|.
T Consensus 71 v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg 123 (163)
T PF03446_consen 71 VEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGG 123 (163)
T ss_dssp HHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESH
T ss_pred hhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecc
Confidence 111111 1 122344567775 456677788999999999999999988774
No 79
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.61 E-value=0.069 Score=44.51 Aligned_cols=86 Identities=22% Similarity=0.236 Sum_probs=52.8
Q ss_pred EEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChhhh
Q 012768 22 VCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEAL 101 (456)
Q Consensus 22 VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~~~ 101 (456)
|+|+|+|.+|.++++.|...| -.++++|.+.- + .+.+.+.. +. ++..++...
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~d~~-------------------~----~~~~~~~~--~~--~i~gd~~~~ 52 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDRDPE-------------------R----VEELREEG--VE--VIYGDATDP 52 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT-SEEEEEESSHH-------------------H----HHHHHHTT--SE--EEES-TTSH
T ss_pred eEEEcCCHHHHHHHHHHHhCC-CEEEEEECCcH-------------------H----HHHHHhcc--cc--cccccchhh
Confidence 689999999999999999944 67999986541 1 13333332 33 233332211
Q ss_pred hcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHc
Q 012768 102 IEMNPPFFSQFTLVVATQLGEEKMIKLDRICREA 135 (456)
Q Consensus 102 ~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~ 135 (456)
......-+.+++.|+++.++......+...+++.
T Consensus 53 ~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~ 86 (116)
T PF02254_consen 53 EVLERAGIEKADAVVILTDDDEENLLIALLAREL 86 (116)
T ss_dssp HHHHHTTGGCESEEEEESSSHHHHHHHHHHHHHH
T ss_pred hHHhhcCccccCEEEEccCCHHHHHHHHHHHHHH
Confidence 1001123558888888877767667777777773
No 80
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=95.56 E-value=0.027 Score=56.00 Aligned_cols=72 Identities=28% Similarity=0.267 Sum_probs=49.3
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCC----CCEEEEE
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIG-SITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELND----AVKAKFI 94 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~-~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp----~v~v~~~ 94 (456)
.+|.|+|+|++|+.+|..|+..|+. +++++|.+ ..|++..+..|....+ .+.+..
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~-------------------~~~~~~~a~dL~~~~~~~~~~~~i~~- 60 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDIN-------------------EEKAEGEALDLEDALAFLPSPVKIKA- 60 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------cchhhHhHhhHHHHhhccCCCeEEEc-
Confidence 3799999999999999999999996 89999842 2355555565555432 223221
Q ss_pred ecChhhhhcCCcCCCCCCcEEEEcCC
Q 012768 95 EEYPEALIEMNPPFFSQFTLVVATQL 120 (456)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~dvVi~~~~ 120 (456)
. +.+.+.++|+||.|..
T Consensus 61 -~--------~~~~l~~aDIVIitag 77 (306)
T cd05291 61 -G--------DYSDCKDADIVVITAG 77 (306)
T ss_pred -C--------CHHHhCCCCEEEEccC
Confidence 1 1122568999997653
No 81
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.55 E-value=0.026 Score=49.71 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=31.2
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
++..+|+|+|+|++|..+++.|...|...++++|.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r 51 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNR 51 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcC
Confidence 45789999999999999999999998778898873
No 82
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.31 E-value=0.06 Score=53.51 Aligned_cols=70 Identities=19% Similarity=0.234 Sum_probs=48.8
Q ss_pred cEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCC-----CCEEEEE
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGI-GSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELND-----AVKAKFI 94 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv-~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp-----~v~v~~~ 94 (456)
+|.|||+|.+|+.+|-.|+..|+ +.+.|+|- .+.|++..+.-|....+ .+++..
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di-------------------~~~~a~g~a~DL~~~~~~~~~~~~~i~~- 60 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV-------------------NEGVAEGEALDFHHATALTYSTNTKIRA- 60 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CcchhhHHHHHHHhhhccCCCCCEEEEE-
Confidence 68999999999999999999999 56999982 23455555555555433 233332
Q ss_pred ecChhhhhcCCcCCCCCCcEEEEcC
Q 012768 95 EEYPEALIEMNPPFFSQFTLVVATQ 119 (456)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~dvVi~~~ 119 (456)
. +.+.++++|+||.|.
T Consensus 61 -~--------~y~~~~~aDivvita 76 (307)
T cd05290 61 -G--------DYDDCADADIIVITA 76 (307)
T ss_pred -C--------CHHHhCCCCEEEECC
Confidence 1 123467899999764
No 83
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.21 E-value=0.021 Score=54.10 Aligned_cols=37 Identities=22% Similarity=0.432 Sum_probs=34.8
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHcCCC--cEEEEeCC
Q 012768 16 ALEKASVCLLNCGPTGSETLKNLVLGGIG--SITVIDGS 52 (456)
Q Consensus 16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~--~itlvD~d 52 (456)
.+++.+|+|+|+|+.|..+++.|...|++ +|+++|.+
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 47888999999999999999999999999 99999976
No 84
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=95.06 E-value=0.046 Score=56.73 Aligned_cols=35 Identities=26% Similarity=0.457 Sum_probs=32.7
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
+.+.+|+|+|+|.+|..+++.|...|+.+++++|.
T Consensus 178 l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~r 212 (417)
T TIGR01035 178 LKGKKALLIGAGEMGELVAKHLLRKGVGKILIANR 212 (417)
T ss_pred ccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeC
Confidence 67799999999999999999999999999999874
No 85
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=94.99 E-value=0.063 Score=53.46 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=32.5
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
+...+|+|+|+|.+|..++++|...|+..++++|.
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r 210 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANR 210 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 57899999999999999999999999999999974
No 86
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=94.97 E-value=0.051 Score=43.73 Aligned_cols=89 Identities=20% Similarity=0.192 Sum_probs=50.0
Q ss_pred cEEEEcCChhHHHHHHHHHHcCC--CcEEEE-eCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecC
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGI--GSITVI-DGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY 97 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv--~~itlv-D~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~ 97 (456)
+|.|||+|.+|..+++.|+..|+ .++.++ +.+. .|+ +.+.+..+ +.+... .
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~-------------------~~~----~~~~~~~~-~~~~~~--~ 54 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSP-------------------EKA----AELAKEYG-VQATAD--D 54 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSH-------------------HHH----HHHHHHCT-TEEESE--E
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcH-------------------HHH----HHHHHhhc-cccccC--C
Confidence 68999999999999999999995 334433 3111 122 33333433 222211 1
Q ss_pred hhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHH-HHHcCCeEEEE
Q 012768 98 PEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRI-CREANVMLIFA 142 (456)
Q Consensus 98 ~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~-~~~~~ip~i~~ 142 (456)
+.+.++..|+||.|..+......+.++ ....+.-+|+.
T Consensus 55 -------~~~~~~~advvilav~p~~~~~v~~~i~~~~~~~~vis~ 93 (96)
T PF03807_consen 55 -------NEEAAQEADVVILAVKPQQLPEVLSEIPHLLKGKLVISI 93 (96)
T ss_dssp -------HHHHHHHTSEEEE-S-GGGHHHHHHHHHHHHTTSEEEEE
T ss_pred -------hHHhhccCCEEEEEECHHHHHHHHHHHhhccCCCEEEEe
Confidence 122344689999998876655555555 23344555543
No 87
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.95 E-value=0.096 Score=54.80 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=32.1
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
|++++|+|+|.|++|..+|+.|+..|. .++++|.+.
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~ 38 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKE 38 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 678999999999999999999999997 699998543
No 88
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=94.86 E-value=0.15 Score=43.42 Aligned_cols=98 Identities=12% Similarity=0.146 Sum_probs=56.6
Q ss_pred cEEEEcC-ChhHHHHHHHHHH-cCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecCh
Q 012768 21 SVCLLNC-GPTGSETLKNLVL-GGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP 98 (456)
Q Consensus 21 ~VlIiG~-gglG~eiaknLvl-~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~ 98 (456)
||.|+|+ |-.|.++++.+.. .|+.=.-.+|... ++. -..|+| +.+..-...+.+. .+.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~---~~~------~g~d~g--------~~~~~~~~~~~v~---~~l 61 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP---SAK------VGKDVG--------ELAGIGPLGVPVT---DDL 61 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT---STT------TTSBCH--------HHCTSST-SSBEB---S-H
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC---ccc------ccchhh--------hhhCcCCcccccc---hhH
Confidence 7999999 9999999999998 7776566666443 000 012232 1111111122211 122
Q ss_pred hhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccc
Q 012768 99 EALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGL 147 (456)
Q Consensus 99 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~ 147 (456)
.+.+..+|+||+.+ ..+......++|.++++|+|.+ +.|+
T Consensus 62 -------~~~~~~~DVvIDfT-~p~~~~~~~~~~~~~g~~~ViG-TTG~ 101 (124)
T PF01113_consen 62 -------EELLEEADVVIDFT-NPDAVYDNLEYALKHGVPLVIG-TTGF 101 (124)
T ss_dssp -------HHHTTH-SEEEEES--HHHHHHHHHHHHHHT-EEEEE--SSS
T ss_pred -------HHhcccCCEEEEcC-ChHHhHHHHHHHHhCCCCEEEE-CCCC
Confidence 22345689999887 4466677788999999997654 5554
No 89
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.85 E-value=0.082 Score=52.67 Aligned_cols=73 Identities=18% Similarity=0.221 Sum_probs=50.1
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCC---EEEEE
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIG-SITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAV---KAKFI 94 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~-~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v---~v~~~ 94 (456)
..+|.|||+|.+|+.+|-.|+..|+. .+.|+|- .+.|++..+.-|+...|.. ++...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~-------------------~~~~~~g~a~Dl~~~~~~~~~~~v~~~ 63 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDV-------------------VEDKLKGEAMDLQHGSAFLKNPKIEAD 63 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CccHHHHHHHHHHHhhccCCCCEEEEC
Confidence 46899999999999999999999996 5999983 2235555555566554422 33221
Q ss_pred ecChhhhhcCCcCCCCCCcEEEEcC
Q 012768 95 EEYPEALIEMNPPFFSQFTLVVATQ 119 (456)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~dvVi~~~ 119 (456)
. +.+.++++|+||.|.
T Consensus 64 -~--------dy~~~~~adivvita 79 (312)
T cd05293 64 -K--------DYSVTANSKVVIVTA 79 (312)
T ss_pred -C--------CHHHhCCCCEEEECC
Confidence 1 223367899999754
No 90
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.81 E-value=0.14 Score=53.43 Aligned_cols=98 Identities=13% Similarity=0.055 Sum_probs=58.8
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE 96 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~ 96 (456)
+...+|+|+|+|.+|..+++.|...|.. ++++|.+.= +. +.+.+..+.+.+ +..
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~-v~vid~~~~-------------------~~----~~~~~~~~~~~~--i~g 282 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYS-VKLIERDPE-------------------RA----EELAEELPNTLV--LHG 282 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCe-EEEEECCHH-------------------HH----HHHHHHCCCCeE--EEC
Confidence 4468899999999999999999998884 788874431 11 233333333432 222
Q ss_pred ChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEE
Q 012768 97 YPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLI 140 (456)
Q Consensus 97 ~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i 140 (456)
++..........+.+++.||++..+......+...|+..+.+-+
T Consensus 283 d~~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~i 326 (453)
T PRK09496 283 DGTDQELLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAKKV 326 (453)
T ss_pred CCCCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCCCeE
Confidence 22111000122356889988776554554555666777765433
No 91
>PLN00203 glutamyl-tRNA reductase
Probab=94.79 E-value=0.051 Score=57.81 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=31.8
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD 50 (456)
|...+|+|||+|.+|..++++|...|+.++++++
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~n 297 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVN 297 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEe
Confidence 5579999999999999999999999999999986
No 92
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.72 E-value=0.2 Score=52.30 Aligned_cols=97 Identities=18% Similarity=0.165 Sum_probs=55.9
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChhh
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEA 100 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~~ 100 (456)
+|+|+|+|.+|..+++.|...|. .++++|.+.- ++ +.+++ ...+++ +..+...
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~-~v~vid~~~~-------------------~~----~~~~~-~~~~~~--~~gd~~~ 54 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENN-DVTVIDTDEE-------------------RL----RRLQD-RLDVRT--VVGNGSS 54 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-cEEEEECCHH-------------------HH----HHHHh-hcCEEE--EEeCCCC
Confidence 79999999999999999999997 5788874331 11 22222 112332 2222111
Q ss_pred hhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHc-CCeEEEEee
Q 012768 101 LIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREA-NVMLIFARS 144 (456)
Q Consensus 101 ~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~-~ip~i~~~~ 144 (456)
........+.++|.||++..+...-..+...++.. +.+-+.+.+
T Consensus 55 ~~~l~~~~~~~a~~vi~~~~~~~~n~~~~~~~r~~~~~~~ii~~~ 99 (453)
T PRK09496 55 PDVLREAGAEDADLLIAVTDSDETNMVACQIAKSLFGAPTTIARV 99 (453)
T ss_pred HHHHHHcCCCcCCEEEEecCChHHHHHHHHHHHHhcCCCeEEEEE
Confidence 00001122568898888766555555566667775 555444443
No 93
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=94.64 E-value=0.099 Score=51.78 Aligned_cols=71 Identities=18% Similarity=0.147 Sum_probs=50.0
Q ss_pred EEEEcCChhHHHHHHHHHHcCCC-cEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCC---CEEEEEecC
Q 012768 22 VCLLNCGPTGSETLKNLVLGGIG-SITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDA---VKAKFIEEY 97 (456)
Q Consensus 22 VlIiG~gglG~eiaknLvl~Gv~-~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~---v~v~~~~~~ 97 (456)
|.|||+|.+|+.+|-.|+..|+. .++++|. -+.|++..+..|....+. +++...
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~-------------------~~~~~~g~~~DL~~~~~~~~~~~i~~~--- 58 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDV-------------------NEEKAKGDALDLSHASAFLATGTIVRG--- 58 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CccHHHHHHHhHHHhccccCCCeEEEC---
Confidence 57999999999999999999984 5999983 234666677777776553 232211
Q ss_pred hhhhhcCCcCCCCCCcEEEEcCC
Q 012768 98 PEALIEMNPPFFSQFTLVVATQL 120 (456)
Q Consensus 98 ~~~~~~~~~~~~~~~dvVi~~~~ 120 (456)
.+.+.+.++|+||.|..
T Consensus 59 ------~~~~~l~~aDiVIitag 75 (300)
T cd00300 59 ------GDYADAADADIVVITAG 75 (300)
T ss_pred ------CCHHHhCCCCEEEEcCC
Confidence 11234678999997653
No 94
>PLN02602 lactate dehydrogenase
Probab=94.56 E-value=0.091 Score=53.12 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=49.5
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCC---CCEEEEEe
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIG-SITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELND---AVKAKFIE 95 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~-~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp---~v~v~~~~ 95 (456)
.+|.|||+|.+|+.+|-.|+..|+. .+.|+|- .+.|++..+.-|+...| .+++....
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi-------------------~~~~~~g~a~DL~~~~~~~~~~~i~~~~ 98 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDV-------------------NPDKLRGEMLDLQHAAAFLPRTKILAST 98 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC-------------------CCchhhHHHHHHHhhhhcCCCCEEEeCC
Confidence 6999999999999999999999995 6999983 22355555555555433 23332211
Q ss_pred cChhhhhcCCcCCCCCCcEEEEcC
Q 012768 96 EYPEALIEMNPPFFSQFTLVVATQ 119 (456)
Q Consensus 96 ~~~~~~~~~~~~~~~~~dvVi~~~ 119 (456)
+.+.++++|+||.|.
T Consensus 99 ---------dy~~~~daDiVVitA 113 (350)
T PLN02602 99 ---------DYAVTAGSDLCIVTA 113 (350)
T ss_pred ---------CHHHhCCCCEEEECC
Confidence 223367899999774
No 95
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=94.47 E-value=0.33 Score=48.27 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=26.2
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEE
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVI 49 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlv 49 (456)
.+|+|+|+|++|+..+-.|.++| ..++++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~ 29 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLL 29 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEE
Confidence 37999999999999999999999 767775
No 96
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=94.47 E-value=0.12 Score=51.82 Aligned_cols=35 Identities=20% Similarity=0.434 Sum_probs=31.5
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
++..+|.|||+|.+|+.+|..++..|+..+.|+|-
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi 38 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDI 38 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeC
Confidence 45679999999999999999999999877999984
No 97
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=94.41 E-value=0.11 Score=51.50 Aligned_cols=118 Identities=18% Similarity=0.216 Sum_probs=68.4
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHh-CCCCEEEEEecC--
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQEL-NDAVKAKFIEEY-- 97 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~l-np~v~v~~~~~~-- 97 (456)
+|.|||+|..|+.++++|...|. .++++|.+.-....+. +.|..-+....+..... ++++-+..+...
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~--------~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~ 72 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEALA--------EEGATGADSLEELVAKLPAPRVVWLMVPAGEI 72 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHH--------HCCCeecCCHHHHHhhcCCCCEEEEEecCCcH
Confidence 69999999999999999999996 5888886542211110 11211111222233332 355555544332
Q ss_pred hhhhhcCCcCCCCCCcEEEEc-CCChHHHHHHHHHHHHcCCeEEEEeeccc
Q 012768 98 PEALIEMNPPFFSQFTLVVAT-QLGEEKMIKLDRICREANVMLIFARSYGL 147 (456)
Q Consensus 98 ~~~~~~~~~~~~~~~dvVi~~-~~~~~~~~~l~~~~~~~~ip~i~~~~~G~ 147 (456)
...+.+.-...+..-++||.+ +.+......+.+.+.+.++.++.+.+.|.
T Consensus 73 ~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~ 123 (301)
T PRK09599 73 TDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGG 123 (301)
T ss_pred HHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcC
Confidence 111111112234444677755 34445566778889999999998877664
No 98
>PTZ00117 malate dehydrogenase; Provisional
Probab=94.29 E-value=0.095 Score=52.38 Aligned_cols=35 Identities=14% Similarity=0.393 Sum_probs=31.8
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
.++.+|.|||+|.+|..++-.|+..|+..+.|+|-
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di 37 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDV 37 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEEC
Confidence 35679999999999999999999999888999994
No 99
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.20 E-value=0.24 Score=52.39 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=31.1
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
++..+|+|+|.|++|.++|..|...|.. ++++|..
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~-V~~~d~~ 48 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGAR-VTVVDDG 48 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCC
Confidence 5677999999999999999999999984 9999854
No 100
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=94.07 E-value=0.16 Score=46.70 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=51.9
Q ss_pred HHhcCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEE
Q 012768 16 ALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFI 94 (456)
Q Consensus 16 ~L~~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~ 94 (456)
.+++++|+|+|. |++|..+++.|+..| .++++++.+ ..|++.+++.+.+.. .+.+...
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~R~-------------------~~~~~~l~~~l~~~~-~~~~~~~ 83 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGRD-------------------LERAQKAADSLRARF-GEGVGAV 83 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCC-------------------HHHHHHHHHHHHhhc-CCcEEEe
Confidence 467789999995 999999999999998 488888532 135665666554332 2333333
Q ss_pred ecC-hhhhhcCCcCCCCCCcEEEEcCCC
Q 012768 95 EEY-PEALIEMNPPFFSQFTLVVATQLG 121 (456)
Q Consensus 95 ~~~-~~~~~~~~~~~~~~~dvVi~~~~~ 121 (456)
+.. .+. ..+.+.++|+||.++..
T Consensus 84 ~~~~~~~----~~~~~~~~diVi~at~~ 107 (194)
T cd01078 84 ETSDDAA----RAAAIKGADVVFAAGAA 107 (194)
T ss_pred eCCCHHH----HHHHHhcCCEEEECCCC
Confidence 211 111 12345688999977643
No 101
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.06 E-value=0.088 Score=40.96 Aligned_cols=58 Identities=24% Similarity=0.310 Sum_probs=40.0
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEE
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAK 92 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~ 92 (456)
||+|+|.|.+|+|+|..|...|. ++|+++...- +. ...+..-++.+.+.+++. .|++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~---------~~--~~~~~~~~~~~~~~l~~~--gV~v~ 58 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDR---------LL--PGFDPDAAKILEEYLRKR--GVEVH 58 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSS---------SS--TTSSHHHHHHHHHHHHHT--TEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccch---------hh--hhcCHHHHHHHHHHHHHC--CCEEE
Confidence 68999999999999999999995 7899874332 11 122333445566677766 34443
No 102
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=93.96 E-value=0.33 Score=48.14 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=28.9
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
..+|+|+|+|++|+-++-.|.++|. .+++++..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence 3579999999999999999999995 69998753
No 103
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=93.85 E-value=0.33 Score=55.63 Aligned_cols=97 Identities=19% Similarity=0.173 Sum_probs=55.7
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHcC-CC------------cEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHH
Q 012768 18 EKASVCLLNCGPTGSETLKNLVLGG-IG------------SITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQE 84 (456)
Q Consensus 18 ~~~~VlIiG~gglG~eiaknLvl~G-v~------------~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~ 84 (456)
+.++|+|+|+|.+|..+++.|+..+ +. .+++.|.+ ..+++.+++.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~-------------------~~~a~~la~~--- 625 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLY-------------------LKDAKETVEG--- 625 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCC-------------------HHHHHHHHHh---
Confidence 4679999999999999999998753 22 14444422 2234333332
Q ss_pred hCCCCEEEEEe-cChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEE
Q 012768 85 LNDAVKAKFIE-EYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFA 142 (456)
Q Consensus 85 lnp~v~v~~~~-~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~ 142 (456)
.|.++....+ .+.+.+ ..++++.|+||.+..+ ..-..+.+.|.+.++.+++.
T Consensus 626 -~~~~~~v~lDv~D~e~L----~~~v~~~DaVIsalP~-~~H~~VAkaAieaGkHvv~e 678 (1042)
T PLN02819 626 -IENAEAVQLDVSDSESL----LKYVSQVDVVISLLPA-SCHAVVAKACIELKKHLVTA 678 (1042)
T ss_pred -cCCCceEEeecCCHHHH----HHhhcCCCEEEECCCc-hhhHHHHHHHHHcCCCEEEC
Confidence 2443322221 122222 2334578888877654 23356667777777776654
No 104
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=93.80 E-value=0.12 Score=51.68 Aligned_cols=31 Identities=19% Similarity=0.330 Sum_probs=28.0
Q ss_pred CcEEEEcC-ChhHHHHHHHHHHcCCC------cEEEEe
Q 012768 20 ASVCLLNC-GPTGSETLKNLVLGGIG------SITVID 50 (456)
Q Consensus 20 ~~VlIiG~-gglG~eiaknLvl~Gv~------~itlvD 50 (456)
.+|.|+|+ |.+|+.+|-.|+..|+- .+.|+|
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~D 41 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLD 41 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEe
Confidence 58999998 99999999999999985 588887
No 105
>PRK00811 spermidine synthase; Provisional
Probab=93.78 E-value=0.42 Score=46.92 Aligned_cols=76 Identities=13% Similarity=0.236 Sum_probs=44.0
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHh------CCCCEE
Q 012768 18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQEL------NDAVKA 91 (456)
Q Consensus 18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~l------np~v~v 91 (456)
...+||++|+|+ |.-....|-..++.+++.+|-|. .-++.+++.+.++ +|.++
T Consensus 76 ~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~-------------------~vv~~a~~~~~~~~~~~~~d~rv~- 134 (283)
T PRK00811 76 NPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDE-------------------RVVEVCRKYLPEIAGGAYDDPRVE- 134 (283)
T ss_pred CCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCH-------------------HHHHHHHHHhHHhccccccCCceE-
Confidence 357899999875 33333334456899999998544 2344555666554 34444
Q ss_pred EEEecChhhhhcCCcCCCCCCcEEEEc
Q 012768 92 KFIEEYPEALIEMNPPFFSQFTLVVAT 118 (456)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~dvVi~~ 118 (456)
.+..+........ -..||+||+.
T Consensus 135 -v~~~Da~~~l~~~---~~~yDvIi~D 157 (283)
T PRK00811 135 -LVIGDGIKFVAET---ENSFDVIIVD 157 (283)
T ss_pred -EEECchHHHHhhC---CCcccEEEEC
Confidence 4444433332221 1379999963
No 106
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=93.72 E-value=0.23 Score=54.26 Aligned_cols=90 Identities=14% Similarity=0.203 Sum_probs=58.8
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecCh
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP 98 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~ 98 (456)
+.+|+|+|+|.+|..+++.|...|+ .++++|.|.- +++ .+++. ..++-.-+...
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~-------------------~v~----~~~~~--g~~v~~GDat~ 453 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPD-------------------HIE----TLRKF--GMKVFYGDATR 453 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHH-------------------HHH----HHHhc--CCeEEEEeCCC
Confidence 4799999999999999999999998 4899996652 222 22222 23332222211
Q ss_pred hhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcC
Q 012768 99 EALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREAN 136 (456)
Q Consensus 99 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ 136 (456)
.++. ...-+.++++||++.++.+....+...++++.
T Consensus 454 ~~~L--~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~~ 489 (621)
T PRK03562 454 MDLL--ESAGAAKAEVLINAIDDPQTSLQLVELVKEHF 489 (621)
T ss_pred HHHH--HhcCCCcCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence 1111 12235588999988877677777777777764
No 107
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=93.64 E-value=0.03 Score=49.88 Aligned_cols=32 Identities=16% Similarity=0.272 Sum_probs=28.4
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
+|.|+|+|..|+.+|..|+..| .+++|+..+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccH
Confidence 6899999999999999999999 6788886543
No 108
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=93.61 E-value=0.12 Score=41.03 Aligned_cols=37 Identities=24% Similarity=0.290 Sum_probs=33.9
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
+..++++|+|+|..|.-++..|...|...++++|.|.
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~rdi 57 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDRDI 57 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 7789999999999999999999999989999998743
No 109
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.60 E-value=0.28 Score=46.75 Aligned_cols=26 Identities=12% Similarity=0.249 Sum_probs=23.2
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHcCC
Q 012768 18 EKASVCLLNCGPTGSETLKNLVLGGI 43 (456)
Q Consensus 18 ~~~~VlIiG~gglG~eiaknLvl~Gv 43 (456)
+..+|.|||+|.+|..+++.|...|.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~ 28 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSK 28 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCC
Confidence 35689999999999999999998874
No 110
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=93.25 E-value=0.24 Score=49.63 Aligned_cols=75 Identities=19% Similarity=0.236 Sum_probs=52.7
Q ss_pred cCcEEEEcCChhHHHHHHHHH-HcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecC
Q 012768 19 KASVCLLNCGPTGSETLKNLV-LGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY 97 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLv-l~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~ 97 (456)
.++|+|+|+|+.|...++.|. ..|+.++++++.+ ..|++..++.+.+..+ +++...+ +
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~-------------------~~~a~~~a~~~~~~~g-~~v~~~~-~ 187 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARD-------------------SAKAEALALQLSSLLG-IDVTAAT-D 187 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCC-------------------HHHHHHHHHHHHhhcC-ceEEEeC-C
Confidence 468999999999999999997 5799999998632 2477777777764332 4443322 1
Q ss_pred hhhhhcCCcCCCCCCcEEEEcCCC
Q 012768 98 PEALIEMNPPFFSQFTLVVATQLG 121 (456)
Q Consensus 98 ~~~~~~~~~~~~~~~dvVi~~~~~ 121 (456)
. .+.+.++|+||.|+.+
T Consensus 188 ~-------~~av~~aDiVvtaT~s 204 (326)
T TIGR02992 188 P-------RAAMSGADIIVTTTPS 204 (326)
T ss_pred H-------HHHhccCCEEEEecCC
Confidence 1 2235689999977654
No 111
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=93.21 E-value=0.19 Score=52.96 Aligned_cols=123 Identities=11% Similarity=0.111 Sum_probs=71.5
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcc--hHHHHHHHHHHh-CCCCEEEEEec
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGES--KAKSVCAFLQEL-NDAVKAKFIEE 96 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~--Ka~~~~~~l~~l-np~v~v~~~~~ 96 (456)
++|.|||+|..|+.+|.||+..|. .++++|.+.-....+... ...-|.. -+....+.++.+ .|++-+..+..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l~~~----~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~ 76 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEFVKK----AKEGNTRVKGYHTLEELVNSLKKPRKVILLIKA 76 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHh----hhhcCCcceecCCHHHHHhcCCCCCEEEEEeCC
Confidence 579999999999999999999998 599998654332211110 0000100 112233444433 35544433221
Q ss_pred C--hhhhhcCCcCCCCCCcEEEEcC-CChHHHHHHHHHHHHcCCeEEEEeeccc
Q 012768 97 Y--PEALIEMNPPFFSQFTLVVATQ-LGEEKMIKLDRICREANVMLIFARSYGL 147 (456)
Q Consensus 97 ~--~~~~~~~~~~~~~~~dvVi~~~-~~~~~~~~l~~~~~~~~ip~i~~~~~G~ 147 (456)
. ...+.+.....+..=|+||++. .......+....+.+.++.|+.+.+.|-
T Consensus 77 ~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG 130 (470)
T PTZ00142 77 GEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGG 130 (470)
T ss_pred hHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCC
Confidence 1 1112111233455668888665 3445555666788889999999988774
No 112
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=93.11 E-value=0.33 Score=52.87 Aligned_cols=89 Identities=18% Similarity=0.229 Sum_probs=58.4
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec-C
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE-Y 97 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~-~ 97 (456)
+.+|+|+|.|.+|..+++.|...|+. ++++|.|.- +++ .+++. ...+-.-+. +
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~-vvvID~d~~-------------------~v~----~~~~~--g~~v~~GDat~ 453 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMR-ITVLERDIS-------------------AVN----LMRKY--GYKVYYGDATQ 453 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCC-EEEEECCHH-------------------HHH----HHHhC--CCeEEEeeCCC
Confidence 46999999999999999999999994 899996651 222 22322 222222111 1
Q ss_pred hhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcC
Q 012768 98 PEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREAN 136 (456)
Q Consensus 98 ~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ 136 (456)
++.+ ...-+.++++||++.++......+-..+++++
T Consensus 454 ~~~L---~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~ 489 (601)
T PRK03659 454 LELL---RAAGAEKAEAIVITCNEPEDTMKIVELCQQHF 489 (601)
T ss_pred HHHH---HhcCCccCCEEEEEeCCHHHHHHHHHHHHHHC
Confidence 1111 12235689999988877777667777788764
No 113
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=92.96 E-value=0.56 Score=46.08 Aligned_cols=30 Identities=20% Similarity=0.354 Sum_probs=27.5
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
+|+|+|+|++|+.++..|+.+|. .++++|.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r 31 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVAR 31 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEEC
Confidence 69999999999999999999994 6999885
No 114
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.95 E-value=0.35 Score=46.73 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=26.2
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCC--CcEEEEe
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGI--GSITVID 50 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv--~~itlvD 50 (456)
.+|.|||+|.+|..++..|...|. ..++++|
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~ 35 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSD 35 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEc
Confidence 479999999999999999999984 3566665
No 115
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=92.90 E-value=0.21 Score=52.51 Aligned_cols=121 Identities=12% Similarity=0.150 Sum_probs=69.5
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccC--cchHHHHHHHHHHh-CCCCEEEEEecC
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVG--ESKAKSVCAFLQEL-NDAVKAKFIEEY 97 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG--~~Ka~~~~~~l~~l-np~v~v~~~~~~ 97 (456)
.|.+||+|..|..+|.||+..|. +++++|.+.-....+...+ ..| -.-+....+..+.+ .|++-+..+...
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~-~V~v~drt~~~~~~l~~~~-----~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~ 74 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF-TVSVYNRTPEKTDEFLAEH-----AKGKKIVGAYSIEEFVQSLERPRKIMLMVKAG 74 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHhhc-----cCCCCceecCCHHHHHhhcCCCCEEEEECCCc
Confidence 48899999999999999999998 5888886543322222110 001 00111122333333 355544443321
Q ss_pred --hhhhhcCCcCCCCCCcEEEEcCC-ChHHHHHHHHHHHHcCCeEEEEeeccc
Q 012768 98 --PEALIEMNPPFFSQFTLVVATQL-GEEKMIKLDRICREANVMLIFARSYGL 147 (456)
Q Consensus 98 --~~~~~~~~~~~~~~~dvVi~~~~-~~~~~~~l~~~~~~~~ip~i~~~~~G~ 147 (456)
...+.+.-...+..=++||++.. ......+..+.+.+.++.|+.+.+.|-
T Consensus 75 ~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG 127 (467)
T TIGR00873 75 APVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGG 127 (467)
T ss_pred HHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCC
Confidence 11222111234555688887653 444444556678888999999988773
No 116
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=92.88 E-value=0.18 Score=53.34 Aligned_cols=123 Identities=11% Similarity=0.085 Sum_probs=73.3
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcc---hHHHHHHHHHHh-CCCCEEEEEe
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGES---KAKSVCAFLQEL-NDAVKAKFIE 95 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~---Ka~~~~~~l~~l-np~v~v~~~~ 95 (456)
++|.+||+|..|..+|+||+..|. .++++|.+.-....+... ....|.. -+....+..+.+ .|++-+..+.
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~-~V~V~NRt~~k~~~l~~~----~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~ 81 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVER----AKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVK 81 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCC-eEEEECCCHHHHHHHHHh----hhhcCCcccccCCCHHHHHhcCCCCCEEEEECC
Confidence 579999999999999999999997 588888543221111100 0000211 122233333333 3666555543
Q ss_pred cCh--hhhhcCCcCCCCCCcEEEEcC-CChHHHHHHHHHHHHcCCeEEEEeeccc
Q 012768 96 EYP--EALIEMNPPFFSQFTLVVATQ-LGEEKMIKLDRICREANVMLIFARSYGL 147 (456)
Q Consensus 96 ~~~--~~~~~~~~~~~~~~dvVi~~~-~~~~~~~~l~~~~~~~~ip~i~~~~~G~ 147 (456)
... +.+.+.-...+..=|+||++. .+......+.+.+.+.++.|+.+.+.|.
T Consensus 82 ~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG 136 (493)
T PLN02350 82 AGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGG 136 (493)
T ss_pred CcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCC
Confidence 221 111111123355567888664 4456677788899999999999988764
No 117
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=92.87 E-value=0.59 Score=41.99 Aligned_cols=97 Identities=15% Similarity=0.131 Sum_probs=58.6
Q ss_pred EEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChhh
Q 012768 22 VCLLNC-GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEA 100 (456)
Q Consensus 22 VlIiG~-gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~~ 100 (456)
|+|+|+ |.+|..+++.|+..| .+++.+= |+ ..|.+. .+.+++...+. .+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~----------R~---------~~~~~~--------~~~~~~~~~d~--~d 50 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALV----------RS---------PSKAED--------SPGVEIIQGDL--FD 50 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEE----------SS---------GGGHHH--------CTTEEEEESCT--TC
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEe----------cC---------chhccc--------ccccccceeee--hh
Confidence 799996 889999999999999 5666642 21 112221 56666544332 11
Q ss_pred hhcCCcCCCCCCcEEEEcCCC----hHHHHHHHHHHHHcCCe-EEEEeecccee
Q 012768 101 LIEMNPPFFSQFTLVVATQLG----EEKMIKLDRICREANVM-LIFARSYGLTG 149 (456)
Q Consensus 101 ~~~~~~~~~~~~dvVi~~~~~----~~~~~~l~~~~~~~~ip-~i~~~~~G~~G 149 (456)
.. .-...+.++|.||.+..+ ......+-+.|.+.+++ ++..++.|.++
T Consensus 51 ~~-~~~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~~~~~~ 103 (183)
T PF13460_consen 51 PD-SVKAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVYLSSAGVYR 103 (183)
T ss_dssp HH-HHHHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEEEEEEETTGTT
T ss_pred hh-hhhhhhhhcchhhhhhhhhcccccccccccccccccccccceeeeccccCC
Confidence 10 012335689999977532 33355667788888874 45555555443
No 118
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.77 E-value=0.58 Score=46.38 Aligned_cols=32 Identities=19% Similarity=0.373 Sum_probs=28.4
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
.+|.|||+|.+|+.++..|+..|. .++++|.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 479999999999999999999997 68888843
No 119
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=92.77 E-value=0.3 Score=41.90 Aligned_cols=71 Identities=11% Similarity=0.100 Sum_probs=38.9
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE 96 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~ 96 (456)
=.+.+|.|||+|-+|..+++.|..+|.. +.-+- .|....++++..+-+...+..
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~-v~~v~----------------------srs~~sa~~a~~~~~~~~~~~--- 61 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGHE-VVGVY----------------------SRSPASAERAAAFIGAGAILD--- 61 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTSE-EEEES----------------------SCHH-HHHHHHC--TT--------
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCCe-EEEEE----------------------eCCcccccccccccccccccc---
Confidence 3467899999999999999999999963 43331 122334455555555443211
Q ss_pred ChhhhhcCCcCCCCCCcEEEEcCCC
Q 012768 97 YPEALIEMNPPFFSQFTLVVATQLG 121 (456)
Q Consensus 97 ~~~~~~~~~~~~~~~~dvVi~~~~~ 121 (456)
..+.+..+|+++.+..+
T Consensus 62 --------~~~~~~~aDlv~iavpD 78 (127)
T PF10727_consen 62 --------LEEILRDADLVFIAVPD 78 (127)
T ss_dssp --------TTGGGCC-SEEEE-S-C
T ss_pred --------cccccccCCEEEEEech
Confidence 12345689999987644
No 120
>PRK06141 ornithine cyclodeaminase; Validated
Probab=92.73 E-value=0.29 Score=48.78 Aligned_cols=77 Identities=14% Similarity=0.105 Sum_probs=52.3
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHH-cCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEE
Q 012768 16 ALEKASVCLLNCGPTGSETLKNLVL-GGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFI 94 (456)
Q Consensus 16 ~L~~~~VlIiG~gglG~eiaknLvl-~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~ 94 (456)
+....+|+|+|+|+.|..+++.+.+ .|+.++++++.+ ..|++..++.+.+... .+...
T Consensus 122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs-------------------~~~a~~~a~~~~~~g~--~~~~~ 180 (314)
T PRK06141 122 RKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRD-------------------PAKAEALAAELRAQGF--DAEVV 180 (314)
T ss_pred CCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcCC--ceEEe
Confidence 3456899999999999999987665 688999998622 3477777777765422 23322
Q ss_pred ecChhhhhcCCcCCCCCCcEEEEcCCC
Q 012768 95 EEYPEALIEMNPPFFSQFTLVVATQLG 121 (456)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~dvVi~~~~~ 121 (456)
. .+ .+.+.++|+||+++.+
T Consensus 181 ~-~~-------~~av~~aDIVi~aT~s 199 (314)
T PRK06141 181 T-DL-------EAAVRQADIISCATLS 199 (314)
T ss_pred C-CH-------HHHHhcCCEEEEeeCC
Confidence 1 11 2235689999876654
No 121
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=92.68 E-value=0.18 Score=49.88 Aligned_cols=31 Identities=32% Similarity=0.570 Sum_probs=29.5
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCC-cEEEEe
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIG-SITVID 50 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~-~itlvD 50 (456)
.+|.|+|+|.+|+.+|-.|+.-+++ .+.|+|
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiD 32 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLID 32 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEE
Confidence 3799999999999999999999999 999998
No 122
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=92.67 E-value=0.55 Score=46.51 Aligned_cols=33 Identities=27% Similarity=0.333 Sum_probs=29.0
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeC
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGI-GSITVIDG 51 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv-~~itlvD~ 51 (456)
..+|+|||+|.+|..+++.|...|. .+++++|.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr 39 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADR 39 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 3689999999999999999999997 47888874
No 123
>PLN02206 UDP-glucuronate decarboxylase
Probab=92.64 E-value=0.76 Score=48.12 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=27.2
Q ss_pred hcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 18 EKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 18 ~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
+..+|+|.| .|-+|+.+++.|...|.. ++.+|.
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~-V~~ld~ 151 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGDS-VIVVDN 151 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcCE-EEEEeC
Confidence 457899999 577999999999999964 666663
No 124
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=92.55 E-value=0.22 Score=49.24 Aligned_cols=117 Identities=15% Similarity=0.183 Sum_probs=62.0
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHh-CCCCEEEEEecCh-
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQEL-NDAVKAKFIEEYP- 98 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~l-np~v~v~~~~~~~- 98 (456)
+|.|||+|..|+.++.+|+..|. .++++|.+.-....+... |...+....+....+ .+++-+..+....
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~ 72 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKED--------RTTGVANLRELSQRLSAPRVVWVMVPHGIV 72 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc--------CCcccCCHHHHHhhcCCCCEEEEEcCchHH
Confidence 69999999999999999999995 577887654222111110 111111111111111 2444443332211
Q ss_pred hhhhcCCcCCCCCCcEEEEcCC-ChHHHHHHHHHHHHcCCeEEEEeecc
Q 012768 99 EALIEMNPPFFSQFTLVVATQL-GEEKMIKLDRICREANVMLIFARSYG 146 (456)
Q Consensus 99 ~~~~~~~~~~~~~~dvVi~~~~-~~~~~~~l~~~~~~~~ip~i~~~~~G 146 (456)
..+.+.-...+..=++||.+.. .......+...+...++.++.+.+.|
T Consensus 73 ~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsG 121 (298)
T TIGR00872 73 DAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSG 121 (298)
T ss_pred HHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCC
Confidence 1111111123433467776543 33445556667778888888887765
No 125
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=92.52 E-value=0.5 Score=46.18 Aligned_cols=30 Identities=13% Similarity=0.134 Sum_probs=27.1
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
+|.|||+|.+|..+++.|...|. .++++|.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~ 31 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSR 31 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEEC
Confidence 69999999999999999999996 5888874
No 126
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.47 E-value=0.53 Score=49.73 Aligned_cols=38 Identities=18% Similarity=0.151 Sum_probs=32.9
Q ss_pred HHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 13 GQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 13 ~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
....++.++|+|+|+|+.|..+++.|...|. .+++.|.
T Consensus 9 ~~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~ 46 (473)
T PRK00141 9 ALPQELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADD 46 (473)
T ss_pred hcccccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECC
Confidence 3345667899999999999999999999998 7888884
No 127
>PRK08618 ornithine cyclodeaminase; Validated
Probab=92.42 E-value=0.37 Score=48.30 Aligned_cols=77 Identities=13% Similarity=0.235 Sum_probs=52.4
Q ss_pred hcCcEEEEcCChhHHHHHHHHH-HcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768 18 EKASVCLLNCGPTGSETLKNLV-LGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE 96 (456)
Q Consensus 18 ~~~~VlIiG~gglG~eiaknLv-l~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~ 96 (456)
...+|+|+|+|+.|...+..+. ..|+++++++|.+ ..|++..++.+++..+ +++....
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~~~~~~~~~~-~~~~~~~- 184 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT-------------------FEKAYAFAQEIQSKFN-TEIYVVN- 184 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC-------------------HHHHHHHHHHHHHhcC-CcEEEeC-
Confidence 4578999999999998888775 5799999999633 2467777777765332 3333322
Q ss_pred ChhhhhcCCcCCCCCCcEEEEcCCCh
Q 012768 97 YPEALIEMNPPFFSQFTLVVATQLGE 122 (456)
Q Consensus 97 ~~~~~~~~~~~~~~~~dvVi~~~~~~ 122 (456)
+. .+.+.++|+||.|+.+.
T Consensus 185 ~~-------~~~~~~aDiVi~aT~s~ 203 (325)
T PRK08618 185 SA-------DEAIEEADIIVTVTNAK 203 (325)
T ss_pred CH-------HHHHhcCCEEEEccCCC
Confidence 11 22346789999877554
No 128
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=92.34 E-value=1.7 Score=40.77 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=25.6
Q ss_pred cEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768 21 SVCLLN-CGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 21 ~VlIiG-~gglG~eiaknLvl~Gv~~itlvD 50 (456)
+|.||| +|.+|+.+++.|+..| .+++++|
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~ 31 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGS 31 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEE
Confidence 699997 8999999999999999 5677775
No 129
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=92.33 E-value=0.34 Score=47.92 Aligned_cols=118 Identities=15% Similarity=0.130 Sum_probs=63.9
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHh-CCCCEEEEEecC--
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQEL-NDAVKAKFIEEY-- 97 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~l-np~v~v~~~~~~-- 97 (456)
+|.+||+|.+|..++++|...|. .++++|.+.-....+ .+.|...+....+..++. ++++-+..+...
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~~~~~~~~--------~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~ 72 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVNQEAVDVA--------GKLGITARHSLEELVSKLEAPRTIWVMVPAGEV 72 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHH--------HHCCCeecCCHHHHHHhCCCCCEEEEEecCchH
Confidence 69999999999999999999996 588888653211111 011221111122222222 234444443322
Q ss_pred hhhhhcCCcCCCCCCcEEEEc-CCChHHHHHHHHHHHHcCCeEEEEeeccc
Q 012768 98 PEALIEMNPPFFSQFTLVVAT-QLGEEKMIKLDRICREANVMLIFARSYGL 147 (456)
Q Consensus 98 ~~~~~~~~~~~~~~~dvVi~~-~~~~~~~~~l~~~~~~~~ip~i~~~~~G~ 147 (456)
...+.+.-...+..=.+||.+ +.+......+.+.+...++.++.+...|.
T Consensus 73 ~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~ 123 (299)
T PRK12490 73 TESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGG 123 (299)
T ss_pred HHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCC
Confidence 111111111223333567755 34445566677777788888888766654
No 130
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.29 E-value=0.59 Score=49.15 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=32.2
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 15 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
.-+..++|+|+|.|..|..+|+.|...|. .+++.|..
T Consensus 10 ~~~~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~ 46 (458)
T PRK01710 10 KFIKNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKK 46 (458)
T ss_pred hhhcCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCC
Confidence 34667899999999999999999999997 68898854
No 131
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.27 E-value=0.41 Score=47.61 Aligned_cols=31 Identities=32% Similarity=0.515 Sum_probs=28.6
Q ss_pred cEEEEcCChhHHHHHHHHHHcCC-CcEEEEeC
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGI-GSITVIDG 51 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv-~~itlvD~ 51 (456)
+|.|||+|.+|+.+|-.|+..|+ ..+.++|.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~ 33 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDI 33 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 69999999999999999999996 67999984
No 132
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=92.15 E-value=0.45 Score=46.28 Aligned_cols=32 Identities=9% Similarity=0.222 Sum_probs=28.9
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768 18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD 50 (456)
..++|+|+|+||+|..++..|...|. +++++|
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~ 147 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADC-NVIIAN 147 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEe
Confidence 36789999999999999999999996 888886
No 133
>PRK07340 ornithine cyclodeaminase; Validated
Probab=92.01 E-value=0.52 Score=46.75 Aligned_cols=75 Identities=16% Similarity=0.170 Sum_probs=53.2
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHH-cCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEe
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVL-GGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE 95 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl-~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~ 95 (456)
....+|+|+|+|+.|...++.+.. .|+.++.++|.+ ..|++..++.+++.+. .+. .
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~a~~~~~~~~--~~~-~- 179 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT-------------------AASAAAFCAHARALGP--TAE-P- 179 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcCC--eeE-E-
Confidence 356889999999999999999964 688999998733 3477778777765432 222 1
Q ss_pred cChhhhhcCCcCCCCCCcEEEEcCCC
Q 012768 96 EYPEALIEMNPPFFSQFTLVVATQLG 121 (456)
Q Consensus 96 ~~~~~~~~~~~~~~~~~dvVi~~~~~ 121 (456)
... .+.+.++|+||.|+.+
T Consensus 180 ~~~-------~~av~~aDiVitaT~s 198 (304)
T PRK07340 180 LDG-------EAIPEAVDLVVTATTS 198 (304)
T ss_pred CCH-------HHHhhcCCEEEEccCC
Confidence 111 2235689999987765
No 134
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=91.96 E-value=0.65 Score=45.30 Aligned_cols=32 Identities=19% Similarity=0.445 Sum_probs=26.6
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCC---CcEEEEe
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGI---GSITVID 50 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv---~~itlvD 50 (456)
+.+|.+||+|-+|..++++|...|. .+++++|
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~ 36 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSD 36 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEEC
Confidence 4579999999999999999999985 3466655
No 135
>PRK07680 late competence protein ComER; Validated
Probab=91.95 E-value=0.64 Score=45.23 Aligned_cols=30 Identities=13% Similarity=0.417 Sum_probs=25.9
Q ss_pred cEEEEcCChhHHHHHHHHHHcCC---CcEEEEe
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGI---GSITVID 50 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv---~~itlvD 50 (456)
+|.|||+|.+|+.++..|...|. ..++++|
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~ 34 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITN 34 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEEC
Confidence 58999999999999999999985 4567765
No 136
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=91.94 E-value=0.53 Score=45.99 Aligned_cols=25 Identities=12% Similarity=0.337 Sum_probs=22.8
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCC
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGI 43 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv 43 (456)
..+|.+||+|..|..++++|...|+
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~ 27 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANV 27 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC
Confidence 4589999999999999999999983
No 137
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=91.89 E-value=1.7 Score=36.70 Aligned_cols=90 Identities=18% Similarity=0.182 Sum_probs=50.3
Q ss_pred cEEEEc-CChhHHHHHHHHHHcCCCc-EEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCC----CCEEEEE
Q 012768 21 SVCLLN-CGPTGSETLKNLVLGGIGS-ITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELND----AVKAKFI 94 (456)
Q Consensus 21 ~VlIiG-~gglG~eiaknLvl~Gv~~-itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp----~v~v~~~ 94 (456)
||.|+| .|-+|.++++.|...---. +.++.... ..|++ +.+..| .-.+...
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~---------------~~g~~--------~~~~~~~~~~~~~~~~~ 57 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR---------------SAGKP--------LSEVFPHPKGFEDLSVE 57 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT---------------TTTSB--------HHHTTGGGTTTEEEBEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc---------------ccCCe--------eehhccccccccceeEe
Confidence 699999 7889999999998732222 22222111 13432 222332 2222222
Q ss_pred ecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEE
Q 012768 95 EEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFA 142 (456)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~ 142 (456)
+. +.+.+.+.|+|+.|..+... ..+...+.+.++++|+.
T Consensus 58 ~~--------~~~~~~~~Dvvf~a~~~~~~-~~~~~~~~~~g~~ViD~ 96 (121)
T PF01118_consen 58 DA--------DPEELSDVDVVFLALPHGAS-KELAPKLLKAGIKVIDL 96 (121)
T ss_dssp ET--------SGHHHTTESEEEE-SCHHHH-HHHHHHHHHTTSEEEES
T ss_pred ec--------chhHhhcCCEEEecCchhHH-HHHHHHHhhCCcEEEeC
Confidence 21 22335789999999876444 44555557888876654
No 138
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=91.86 E-value=0.41 Score=44.95 Aligned_cols=60 Identities=27% Similarity=0.313 Sum_probs=47.1
Q ss_pred HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEe
Q 012768 17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE 95 (456)
Q Consensus 17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~ 95 (456)
+..++++++| +||+|-+++|.|...|++.+.+.|... | -.+...|++.||.+++..+.
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~E----n-----------------~~a~akL~ai~p~~~v~F~~ 61 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEE----N-----------------PEAIAKLQAINPSVSVIFIK 61 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhh----C-----------------HHHHHHHhccCCCceEEEEE
Confidence 4578899986 999999999999999999888876211 1 12346899999999988765
Q ss_pred cC
Q 012768 96 EY 97 (456)
Q Consensus 96 ~~ 97 (456)
-+
T Consensus 62 ~D 63 (261)
T KOG4169|consen 62 CD 63 (261)
T ss_pred ec
Confidence 43
No 139
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=91.82 E-value=0.22 Score=48.83 Aligned_cols=103 Identities=18% Similarity=0.187 Sum_probs=59.4
Q ss_pred cEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChh
Q 012768 21 SVCLLN-CGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPE 99 (456)
Q Consensus 21 ~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~ 99 (456)
||||+| .|-+|+.+++.|...|..-+. ++.. ++.-...+.+.+.+.+..|++-++.......
T Consensus 2 riLI~GasG~lG~~l~~~l~~~~~~v~~-~~r~----------------~~dl~d~~~~~~~~~~~~pd~Vin~aa~~~~ 64 (286)
T PF04321_consen 2 RILITGASGFLGSALARALKERGYEVIA-TSRS----------------DLDLTDPEAVAKLLEAFKPDVVINCAAYTNV 64 (286)
T ss_dssp EEEEETTTSHHHHHHHHHHTTTSEEEEE-ESTT----------------CS-TTSHHHHHHHHHHH--SEEEE------H
T ss_pred EEEEECCCCHHHHHHHHHHhhCCCEEEE-eCch----------------hcCCCCHHHHHHHHHHhCCCeEeccceeecH
Confidence 799999 577999999999987754333 3333 1222345677788888889887765322111
Q ss_pred hhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccce
Q 012768 100 ALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLT 148 (456)
Q Consensus 100 ~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~ 148 (456)
+..+.+++. +...+......|.+.|...++++|+.++..+|
T Consensus 65 ~~ce~~p~~--------a~~iN~~~~~~la~~~~~~~~~li~~STd~VF 105 (286)
T PF04321_consen 65 DACEKNPEE--------AYAINVDATKNLAEACKERGARLIHISTDYVF 105 (286)
T ss_dssp HHHHHSHHH--------HHHHHTHHHHHHHHHHHHCT-EEEEEEEGGGS
T ss_pred HhhhhChhh--------hHHHhhHHHHHHHHHHHHcCCcEEEeeccEEE
Confidence 111111110 00012234467888999999999999887655
No 140
>PRK06197 short chain dehydrogenase; Provisional
Probab=91.81 E-value=0.4 Score=47.24 Aligned_cols=42 Identities=14% Similarity=0.151 Sum_probs=34.4
Q ss_pred cCHHHHHHHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 9 WGEQGQAALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 9 wG~~~q~~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
|+......+++++|+|.| .||+|.++++.|+..|. ++++++.
T Consensus 6 ~~~~~~~~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r 48 (306)
T PRK06197 6 WTAADIPDQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVR 48 (306)
T ss_pred CCccccccCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence 666556678888999998 58999999999999997 5667653
No 141
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.80 E-value=0.24 Score=49.63 Aligned_cols=32 Identities=16% Similarity=0.245 Sum_probs=28.7
Q ss_pred CcEEEEcC-ChhHHHHHHHHHHcCCC------cEEEEeC
Q 012768 20 ASVCLLNC-GPTGSETLKNLVLGGIG------SITVIDG 51 (456)
Q Consensus 20 ~~VlIiG~-gglG~eiaknLvl~Gv~------~itlvD~ 51 (456)
.+|.|+|+ |.+|+.+|-.|+..|+- .+.|+|-
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di 41 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLEL 41 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEec
Confidence 58999999 99999999999999985 4999983
No 142
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=91.72 E-value=0.55 Score=45.39 Aligned_cols=91 Identities=11% Similarity=0.145 Sum_probs=54.1
Q ss_pred CcEEEEcC-ChhHHHHHHHHHH-cCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecC
Q 012768 20 ASVCLLNC-GPTGSETLKNLVL-GGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY 97 (456)
Q Consensus 20 ~~VlIiG~-gglG~eiaknLvl-~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~ 97 (456)
-+|.|+|+ |.+|..+++.+.. .++.-..++|.+.-.. .. . . ...+. .. .+
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~---~~-------------------~-~--~~~i~--~~-~d 53 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPL---VG-------------------Q-G--ALGVA--IT-DD 53 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc---cc-------------------c-C--CCCcc--cc-CC
Confidence 37999999 9999999998875 4555555566442110 00 0 0 00111 11 11
Q ss_pred hhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccc
Q 012768 98 PEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGL 147 (456)
Q Consensus 98 ~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~ 147 (456)
. .+.+.++|+||.++.+ .....+...|.++++|++.+ +.|+
T Consensus 54 l-------~~ll~~~DvVid~t~p-~~~~~~~~~al~~G~~vvig-ttG~ 94 (257)
T PRK00048 54 L-------EAVLADADVLIDFTTP-EATLENLEFALEHGKPLVIG-TTGF 94 (257)
T ss_pred H-------HHhccCCCEEEECCCH-HHHHHHHHHHHHcCCCEEEE-CCCC
Confidence 1 1223468899877744 44467788899999998854 5554
No 143
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.69 E-value=0.5 Score=46.88 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=29.1
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
..+|.|+|+|.+|+.++++|...|. .++++|.+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 3579999999999999999999996 68888854
No 144
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=91.67 E-value=0.63 Score=50.22 Aligned_cols=34 Identities=29% Similarity=0.411 Sum_probs=30.2
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
+.||+|+|+|.+|..+++.|...|. .++++|.|.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~ 450 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSR 450 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCC-CEEEEECCH
Confidence 4799999999999999999999997 489998654
No 145
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=91.62 E-value=0.51 Score=49.01 Aligned_cols=109 Identities=15% Similarity=0.164 Sum_probs=70.6
Q ss_pred cEEEEcCChhHH-HHHHHHHH----cCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEe
Q 012768 21 SVCLLNCGPTGS-ETLKNLVL----GGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE 95 (456)
Q Consensus 21 ~VlIiG~gglG~-eiaknLvl----~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~ 95 (456)
+|.|||+|++-+ ++.+.|+. .+++.|+|+|-|. +..|.. =...+.+...+.++.++++...
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~~rl~~------------v~~~~~~~~~~~~~~~~v~~t~ 67 (419)
T cd05296 2 KLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE--EEKLEI------------VGALAKRMVKKAGLPIKVHLTT 67 (419)
T ss_pred EEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCCh--HHHHHH------------HHHHHHHHHHhhCCCeEEEEeC
Confidence 799999999855 77888776 5789999999553 222211 1223445666777777777644
Q ss_pred cChhhhhcCCcCCCCCCcEEEEcC--CChHHHHHHHHHHHHcCCeEEEEeeccceeeEEe
Q 012768 96 EYPEALIEMNPPFFSQFTLVVATQ--LGEEKMIKLDRICREANVMLIFARSYGLTGFVRI 153 (456)
Q Consensus 96 ~~~~~~~~~~~~~~~~~dvVi~~~--~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~ 153 (456)
.. .+-+.+.|+||.+. ...+.+..-.++..++|+ +-..+.|..|..+.
T Consensus 68 d~--------~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi--~gqET~G~GG~~~a 117 (419)
T cd05296 68 DR--------REALEGADFVFTQIRVGGLEARALDERIPLKHGV--IGQETTGAGGFAKA 117 (419)
T ss_pred CH--------HHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCC--ccccCCCcchHHHh
Confidence 21 23466889999764 233445455567777776 34788888885544
No 146
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=91.48 E-value=1.1 Score=44.95 Aligned_cols=32 Identities=19% Similarity=0.122 Sum_probs=25.3
Q ss_pred CcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 20 ASVCLLNC-GPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 20 ~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
.+|+|.|+ |-+|+.+++.|...|=-+++.+|.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r 34 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDM 34 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeC
Confidence 36999996 779999999999864236777763
No 147
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=91.40 E-value=0.14 Score=46.61 Aligned_cols=41 Identities=20% Similarity=0.232 Sum_probs=34.0
Q ss_pred HHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 012768 13 GQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV 54 (456)
Q Consensus 13 ~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v 54 (456)
....|.+++|.|+|+|.+|.++|+-|...|. ++..+|...-
T Consensus 30 ~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~ 70 (178)
T PF02826_consen 30 PGRELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPK 70 (178)
T ss_dssp TBS-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCH
T ss_pred CccccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCC
Confidence 3457899999999999999999999999999 7888885543
No 148
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=91.32 E-value=0.18 Score=39.84 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=20.7
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhc
Q 012768 431 AAELHAVAAFIGGVASQEVIKVVF 454 (456)
Q Consensus 431 ~~~l~~vaa~~GGiaaQEvIK~i~ 454 (456)
.|-|.|+++++|.+.|+|+||+|+
T Consensus 23 ~GVlg~~~giigslqA~eaik~l~ 46 (84)
T PF05237_consen 23 AGVLGPVVGIIGSLQANEAIKLLL 46 (84)
T ss_dssp S-B-HHHHHHHHHHHHHHHHHHHC
T ss_pred cccccchHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999986
No 149
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.25 E-value=0.19 Score=50.33 Aligned_cols=33 Identities=18% Similarity=0.234 Sum_probs=29.3
Q ss_pred CcEEEEcC-ChhHHHHHHHHHHcCCCc------EEEEeCC
Q 012768 20 ASVCLLNC-GPTGSETLKNLVLGGIGS------ITVIDGS 52 (456)
Q Consensus 20 ~~VlIiG~-gglG~eiaknLvl~Gv~~------itlvD~d 52 (456)
.+|+|+|+ |.+|+.++..|+..|+-. +.|+|-.
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~ 40 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIP 40 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecC
Confidence 37999998 999999999999999876 9999853
No 150
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=91.24 E-value=0.68 Score=45.58 Aligned_cols=107 Identities=13% Similarity=0.129 Sum_probs=60.4
Q ss_pred cEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChh
Q 012768 21 SVCLLNC-GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPE 99 (456)
Q Consensus 21 ~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~ 99 (456)
+|||.|+ |-+|+.+++.|...| +++.+|.... + ...|+- ..+.+.+.+.+..|++-++.......
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~~~~~--------~--~~~Dl~--d~~~~~~~~~~~~~D~Vih~Aa~~~~ 67 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG--NLIALDVHST--------D--YCGDFS--NPEGVAETVRKIRPDVIVNAAAHTAV 67 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC--CEEEeccccc--------c--ccCCCC--CHHHHHHHHHhcCCCEEEECCccCCc
Confidence 6999995 779999999999888 5887775321 0 112332 23445556666667665543211000
Q ss_pred hhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeecccee
Q 012768 100 ALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTG 149 (456)
Q Consensus 100 ~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G 149 (456)
...+.+++ . ....+......+.+.|+..++++|+.++...||
T Consensus 68 ~~~~~~~~------~--~~~~N~~~~~~l~~aa~~~g~~~v~~Ss~~Vy~ 109 (299)
T PRK09987 68 DKAESEPE------F--AQLLNATSVEAIAKAANEVGAWVVHYSTDYVFP 109 (299)
T ss_pred chhhcCHH------H--HHHHHHHHHHHHHHHHHHcCCeEEEEccceEEC
Confidence 00000000 0 000122234567789999999999888766654
No 151
>PLN00016 RNA-binding protein; Provisional
Probab=91.17 E-value=1.3 Score=45.08 Aligned_cols=116 Identities=20% Similarity=0.219 Sum_probs=66.8
Q ss_pred HHHhcCcEEEE----cC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHh-CCC
Q 012768 15 AALEKASVCLL----NC-GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQEL-NDA 88 (456)
Q Consensus 15 ~~L~~~~VlIi----G~-gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~l-np~ 88 (456)
......+|+|+ |+ |-+|+.+++.|+..|. .+++++.+.-....+.. .+ -..+.++ .+.
T Consensus 48 ~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~~~~~~~----------~~-----~~~~~~l~~~~ 111 (378)
T PLN00016 48 AAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEPSQKMKK----------EP-----FSRFSELSSAG 111 (378)
T ss_pred cccccceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcchhhhcc----------Cc-----hhhhhHhhhcC
Confidence 34556789999 85 7799999999999995 68887754321110000 00 0111122 122
Q ss_pred CEEEEEecChhhhhcCCcCCCCCCcEEEEcCC-ChHHHHHHHHHHHHcCC-eEEEEeeccceee
Q 012768 89 VKAKFIEEYPEALIEMNPPFFSQFTLVVATQL-GEEKMIKLDRICREANV-MLIFARSYGLTGF 150 (456)
Q Consensus 89 v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~-~~~~~~~l~~~~~~~~i-p~i~~~~~G~~G~ 150 (456)
+++ +..+..++.. .. ...++|+||.+.. .......+-+.|++.++ .+|.+++.|.+|.
T Consensus 112 v~~--v~~D~~d~~~-~~-~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS~~vyg~ 171 (378)
T PLN00016 112 VKT--VWGDPADVKS-KV-AGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSSAGVYKK 171 (378)
T ss_pred ceE--EEecHHHHHh-hh-ccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEccHhhcCC
Confidence 332 2223322111 00 1237899996643 34445667788988887 6888888887764
No 152
>PRK10537 voltage-gated potassium channel; Provisional
Probab=91.13 E-value=0.71 Score=47.52 Aligned_cols=37 Identities=22% Similarity=0.162 Sum_probs=31.3
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 15 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
...++.||+|+|.|.+|.++++.|...|. .++++|.|
T Consensus 236 ~~~~k~HvII~G~g~lg~~v~~~L~~~g~-~vvVId~d 272 (393)
T PRK10537 236 HMHRKDHFIICGHSPLAINTYLGLRQRGQ-AVTVIVPL 272 (393)
T ss_pred hcccCCeEEEECCChHHHHHHHHHHHCCC-CEEEEECc
Confidence 33456889999999999999999998886 68888865
No 153
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.10 E-value=0.48 Score=47.12 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=28.8
Q ss_pred cEEEEcC-ChhHHHHHHHHHHcCC-CcEEEEeCC
Q 012768 21 SVCLLNC-GPTGSETLKNLVLGGI-GSITVIDGS 52 (456)
Q Consensus 21 ~VlIiG~-gglG~eiaknLvl~Gv-~~itlvD~d 52 (456)
+|.|||+ |.+|+.+|-.|+..|+ ..+.|+|-.
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~ 35 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV 35 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 7999999 9999999999999998 579999954
No 154
>PTZ00325 malate dehydrogenase; Provisional
Probab=91.08 E-value=0.43 Score=47.66 Aligned_cols=35 Identities=20% Similarity=0.137 Sum_probs=30.2
Q ss_pred HhcCcEEEEcC-ChhHHHHHHHHHHcCCC-cEEEEeC
Q 012768 17 LEKASVCLLNC-GPTGSETLKNLVLGGIG-SITVIDG 51 (456)
Q Consensus 17 L~~~~VlIiG~-gglG~eiaknLvl~Gv~-~itlvD~ 51 (456)
++-.+|.|+|+ |.+|+.++-.|+..|.. .+.|+|-
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di 42 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI 42 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence 45569999998 99999999999987775 6999985
No 155
>PRK05442 malate dehydrogenase; Provisional
Probab=91.06 E-value=0.3 Score=48.95 Aligned_cols=31 Identities=16% Similarity=0.319 Sum_probs=28.1
Q ss_pred CcEEEEcC-ChhHHHHHHHHHHcCCC------cEEEEe
Q 012768 20 ASVCLLNC-GPTGSETLKNLVLGGIG------SITVID 50 (456)
Q Consensus 20 ~~VlIiG~-gglG~eiaknLvl~Gv~------~itlvD 50 (456)
.+|.|+|+ |.+|+.+|-.|+..|+- .+.|+|
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiD 42 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLE 42 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEe
Confidence 58999998 99999999999998885 599998
No 156
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=91.02 E-value=0.34 Score=46.54 Aligned_cols=40 Identities=20% Similarity=0.394 Sum_probs=33.9
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHc----CC------CcEEEEeCCcc
Q 012768 15 AALEKASVCLLNCGPTGSETLKNLVLG----GI------GSITVIDGSKV 54 (456)
Q Consensus 15 ~~L~~~~VlIiG~gglG~eiaknLvl~----Gv------~~itlvD~d~v 54 (456)
++|++.+|+++|+|+.|.-|++.|+.+ |+ ++|.++|..-+
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gl 70 (255)
T PF03949_consen 21 KKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGL 70 (255)
T ss_dssp S-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEE
T ss_pred CCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccce
Confidence 359999999999999999999999999 99 89999997643
No 157
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=90.94 E-value=0.29 Score=49.08 Aligned_cols=36 Identities=19% Similarity=0.168 Sum_probs=33.2
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
.|.+++|+|||+|-+|..++++|...|++++++...
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nR 206 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSR 206 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcC
Confidence 478899999999999999999999999999999853
No 158
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=90.85 E-value=0.82 Score=45.70 Aligned_cols=33 Identities=30% Similarity=0.261 Sum_probs=28.3
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEE
Q 012768 15 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITV 48 (456)
Q Consensus 15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itl 48 (456)
..++.++|.|+|+|.+|..+|+.|.-.| ..|.-
T Consensus 158 ~~~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y 190 (336)
T KOG0069|consen 158 YDLEGKTVGILGLGRIGKAIAKRLKPFG-CVILY 190 (336)
T ss_pred ccccCCEEEEecCcHHHHHHHHhhhhcc-ceeee
Confidence 4688999999999999999999999977 44443
No 159
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.83 E-value=0.85 Score=48.49 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=30.6
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
+++.+|+|+|.|+.|..+|+.|...|. +++..|..
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~ 39 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGA-RLRVADTR 39 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCC-EEEEEcCC
Confidence 456789999999999999999999997 58888843
No 160
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=90.81 E-value=1.4 Score=43.35 Aligned_cols=30 Identities=17% Similarity=0.303 Sum_probs=26.9
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
+|+|+|+|++|+.++..|+..|. .+++++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence 69999999999999999999985 5888874
No 161
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=90.80 E-value=1.4 Score=42.50 Aligned_cols=23 Identities=9% Similarity=0.226 Sum_probs=21.6
Q ss_pred cEEEEcCChhHHHHHHHHHHcCC
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGI 43 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv 43 (456)
+|.|||+|.+|..+++.|...|.
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~ 24 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPA 24 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCC
Confidence 69999999999999999999885
No 162
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=90.78 E-value=0.34 Score=47.24 Aligned_cols=32 Identities=19% Similarity=0.163 Sum_probs=30.1
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
.+|+|+|+||.+..++-.|...|+++++|++.
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR 154 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVAR 154 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 58999999999999999999999999999973
No 163
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=90.71 E-value=0.34 Score=43.66 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=30.9
Q ss_pred HHhcCcEEEEcCChh-HHHHHHHHHHcCCCcEEEEeC
Q 012768 16 ALEKASVCLLNCGPT-GSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 16 ~L~~~~VlIiG~ggl-G~eiaknLvl~Gv~~itlvD~ 51 (456)
.|.+++|+|+|.|.. |..++++|...|+ ++++++.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r 76 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS 76 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC
Confidence 478899999999985 8889999999999 6998873
No 164
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.70 E-value=1.2 Score=46.57 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=29.0
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
++|+|+|.|+.|..+|+.|...|. .+++.|...
T Consensus 1 ~~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~~ 33 (459)
T PRK02705 1 AIAHVIGLGRSGIAAARLLKAQGW-EVVVSDRND 33 (459)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC-EEEEECCCC
Confidence 479999999999999999999997 688888543
No 165
>PRK08291 ectoine utilization protein EutC; Validated
Probab=90.67 E-value=0.73 Score=46.24 Aligned_cols=75 Identities=16% Similarity=0.163 Sum_probs=50.9
Q ss_pred cCcEEEEcCChhHHHHHHHHHH-cCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecC
Q 012768 19 KASVCLLNCGPTGSETLKNLVL-GGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY 97 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl-~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~ 97 (456)
..+|+|+|+|+.|...+..|.. .|+..+++++.+ ..|++..++.+++.. .+++.... +
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~-------------------~~~a~~l~~~~~~~~-g~~v~~~~-d 190 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARD-------------------AAKAEAYAADLRAEL-GIPVTVAR-D 190 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHhhcc-CceEEEeC-C
Confidence 4689999999999999999985 688999998632 236777777665432 24433322 1
Q ss_pred hhhhhcCCcCCCCCCcEEEEcCCC
Q 012768 98 PEALIEMNPPFFSQFTLVVATQLG 121 (456)
Q Consensus 98 ~~~~~~~~~~~~~~~dvVi~~~~~ 121 (456)
. .+.+.++|+||.++.+
T Consensus 191 ~-------~~al~~aDiVi~aT~s 207 (330)
T PRK08291 191 V-------HEAVAGADIIVTTTPS 207 (330)
T ss_pred H-------HHHHccCCEEEEeeCC
Confidence 1 2235578999977644
No 166
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=90.65 E-value=0.87 Score=46.63 Aligned_cols=75 Identities=11% Similarity=0.076 Sum_probs=49.9
Q ss_pred CcEEEEcC-ChhHHHHHHHHHHcCCCc------EEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhC-CCC-E
Q 012768 20 ASVCLLNC-GPTGSETLKNLVLGGIGS------ITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELN-DAV-K 90 (456)
Q Consensus 20 ~~VlIiG~-gglG~eiaknLvl~Gv~~------itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~ln-p~v-~ 90 (456)
.+|.|+|+ |.+|+.+|-.|+..|+-. ++|+|-| +.+.|++..+.-|.... |.. .
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD-----------------~~~~~a~g~a~DL~d~a~~~~~~ 107 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSE-----------------RSKEALEGVAMELEDSLYPLLRE 107 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccC-----------------ccchhhhHHHHHHHHhhhhhcCc
Confidence 48999999 999999999999999965 5666532 33456666665555544 432 2
Q ss_pred EEEEecChhhhhcCCcCCCCCCcEEEEcC
Q 012768 91 AKFIEEYPEALIEMNPPFFSQFTLVVATQ 119 (456)
Q Consensus 91 v~~~~~~~~~~~~~~~~~~~~~dvVi~~~ 119 (456)
+.+.. .+.+.+++.|+||.+.
T Consensus 108 v~i~~--------~~y~~~kdaDIVVitA 128 (387)
T TIGR01757 108 VSIGI--------DPYEVFEDADWALLIG 128 (387)
T ss_pred eEEec--------CCHHHhCCCCEEEECC
Confidence 22111 1234477999999764
No 167
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=90.51 E-value=0.36 Score=44.86 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=31.5
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
.|+.++|+|+|+|.+|..++++|...|. ++++.|.+
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~ 60 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN 60 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 4778999999999999999999999997 67787743
No 168
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=90.47 E-value=0.41 Score=47.37 Aligned_cols=67 Identities=28% Similarity=0.281 Sum_probs=45.3
Q ss_pred EEcCChhHHHHHHHHHHcCCC-cEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCC----CCEEEEEecCh
Q 012768 24 LLNCGPTGSETLKNLVLGGIG-SITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELND----AVKAKFIEEYP 98 (456)
Q Consensus 24 IiG~gglG~eiaknLvl~Gv~-~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp----~v~v~~~~~~~ 98 (456)
|||+|.+|+.+|-.|+..|+. .+.|+|- .+.|++..+.-|+...+ .+++.. .
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di-------------------~~~~~~g~a~Dl~~~~~~~~~~~~i~~--~-- 57 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDI-------------------NKDKAEGEAMDLQHAASFLPTPKKIRS--G-- 57 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CCChhhHHHHHHHHhhcccCCCeEEec--C--
Confidence 689999999999999999985 5999983 22345555555555432 333331 1
Q ss_pred hhhhcCCcCCCCCCcEEEEcC
Q 012768 99 EALIEMNPPFFSQFTLVVATQ 119 (456)
Q Consensus 99 ~~~~~~~~~~~~~~dvVi~~~ 119 (456)
+.+.++++|+||.+.
T Consensus 58 ------~~~~~~daDivVita 72 (299)
T TIGR01771 58 ------DYSDCKDADLVVITA 72 (299)
T ss_pred ------CHHHHCCCCEEEECC
Confidence 223477899999764
No 169
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=90.45 E-value=1.2 Score=44.78 Aligned_cols=32 Identities=28% Similarity=0.508 Sum_probs=28.4
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
.+|+|+|+|.+|+.+|..|..+|. +++++|.+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCC-cEEEEecH
Confidence 479999999999999999999995 68888853
No 170
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=90.35 E-value=0.71 Score=47.96 Aligned_cols=88 Identities=27% Similarity=0.499 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHH-cCCCCCCCC-------------------CCchhhHHHHHHHHHHHHhhcCCCCCCchHHHHHHH
Q 012768 367 GFYILLRAVDRFAAN-YNNYPGEFD-------------------GPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEM 426 (456)
Q Consensus 367 ~~~~~~~al~~F~~~-~gr~P~~~~-------------------~~~~~D~~~l~~~~~~i~~~~~~~~~~i~e~~v~e~ 426 (456)
..+++.+|+.+|.++ +|..|-+.. .....|..++..++.+++++.|.+.+.|+++.|+.|
T Consensus 288 ~fwi~~~alk~F~~~~~g~lPl~G~lPDM~s~t~~Yi~Lq~iY~~ka~~D~~~v~~~v~~~~~~~g~~~~~I~~~~i~~F 367 (425)
T cd01493 288 SFWIMARALKEFVAEENGLLPLPGTLPDMTADTEKYIKLQNIYREKAEKDAAEVEKYVREILKSLGRSPDSISDKEIKLF 367 (425)
T ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 467789999999988 998885431 113468899999999999998987789999999999
Q ss_pred HHhC--------CCcchhHHHHHHHHHHHHHHHHhc
Q 012768 427 CRFG--------AAELHAVAAFIGGVASQEVIKVVF 454 (456)
Q Consensus 427 ~r~~--------~~~l~~vaa~~GGiaaQEvIK~i~ 454 (456)
|+.+ ..--||+|||+||+|||||||+||
T Consensus 368 Ckna~~l~~i~~~~~~~~~~~~~gg~~aqE~iK~~t 403 (425)
T cd01493 368 CKNAAFLRVIRGRSLEHNISAFMGGIAAQEVIKLIT 403 (425)
T ss_pred HhhHHhhhcccCCcccchHHHHHhHHHHHHHHHHHh
Confidence 9875 222399999999999999999997
No 171
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=90.33 E-value=0.36 Score=42.16 Aligned_cols=28 Identities=21% Similarity=0.426 Sum_probs=25.2
Q ss_pred EEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768 22 VCLLNCGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 22 VlIiG~gglG~eiaknLvl~Gv~~itlvD 50 (456)
|+|+|+|++|+.+|-.|..+|.. +++++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~-V~l~~ 28 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHD-VTLVS 28 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred CEEECcCHHHHHHHHHHHHCCCc-eEEEE
Confidence 78999999999999999997776 88876
No 172
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=90.29 E-value=2.3 Score=42.59 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=29.9
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
...+|+|.|+|++|..++.-+...|.+++.++|.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~ 202 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADV 202 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeC
Confidence 4678999999999999999888999988888763
No 173
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=90.24 E-value=2.1 Score=44.78 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=26.7
Q ss_pred cCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 19 KASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 19 ~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
..+|+|.| .|-+|+.+++.|...|. +++.+|.
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G~-~V~~ldr 152 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRGD-EVIVIDN 152 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeC
Confidence 45799999 57799999999999986 5777774
No 174
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=90.06 E-value=0.99 Score=44.62 Aligned_cols=31 Identities=19% Similarity=0.453 Sum_probs=28.1
Q ss_pred EEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 22 VCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 22 VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
|.|||+|.+|+-+|-.|+..|...++++|.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 6799999999999999999987799999965
No 175
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=90.03 E-value=1 Score=43.67 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=24.0
Q ss_pred cEEEEcCChhHHHHHHHHHHcC--CCcEEEEeC
Q 012768 21 SVCLLNCGPTGSETLKNLVLGG--IGSITVIDG 51 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~G--v~~itlvD~ 51 (456)
+|.|||+|.+|..+++.|...+ +.-+.++|.
T Consensus 3 rIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~ 35 (265)
T PRK13304 3 KIGIVGCGAIASLITKAILSGRINAELYAFYDR 35 (265)
T ss_pred EEEEECccHHHHHHHHHHHcCCCCeEEEEEECC
Confidence 7999999999999999998764 333445553
No 176
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=90.02 E-value=0.93 Score=47.24 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=32.9
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCccc
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVE 55 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~ 55 (456)
+.+.+|+|+|+|..|..+++.|...| ..+++.|.....
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G-~~v~v~D~~~~~ 42 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLG-AEVTVSDDRPAP 42 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCC-CeEEEEcCCCCc
Confidence 44899999999999999999999999 569999865543
No 177
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=90.00 E-value=2.4 Score=42.00 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=27.7
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
+|.|+|+|.+|+.++.+|...|.. ++++|.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~-V~~~~r~ 33 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHD-VTLWARD 33 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCE-EEEEECC
Confidence 699999999999999999999974 8888754
No 178
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=89.97 E-value=1 Score=43.61 Aligned_cols=34 Identities=21% Similarity=0.183 Sum_probs=27.3
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHcCC---CcEEEEeC
Q 012768 18 EKASVCLLNCGPTGSETLKNLVLGGI---GSITVIDG 51 (456)
Q Consensus 18 ~~~~VlIiG~gglG~eiaknLvl~Gv---~~itlvD~ 51 (456)
.+.+|.|||+|.+|+.+++.|...|. .++.+.|.
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~ 38 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTP 38 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECC
Confidence 34689999999999999999999884 23666553
No 179
>PLN02427 UDP-apiose/xylose synthase
Probab=89.95 E-value=1.4 Score=44.92 Aligned_cols=37 Identities=16% Similarity=0.338 Sum_probs=29.5
Q ss_pred HHHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 15 AALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 15 ~~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
++++..+|+|.| +|-+|+.+++.|+..|--+++.+|.
T Consensus 10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 356777899999 5779999999999985346777774
No 180
>PRK09330 cell division protein FtsZ; Validated
Probab=89.82 E-value=2.3 Score=43.55 Aligned_cols=37 Identities=14% Similarity=0.297 Sum_probs=30.2
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCCc--EEEEeCCc
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIGS--ITVIDGSK 53 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~--itlvD~d~ 53 (456)
....+|.|||+||-|+.++.+|+..|+.. +..++.|.
T Consensus 11 ~~~~~IkViGvGG~G~Nav~~m~~~~~~~v~fia~NTD~ 49 (384)
T PRK09330 11 NQGAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTDA 49 (384)
T ss_pred ccCCeEEEEEECCcHHHHHHHHHHcCCCCceEEEEeCcH
Confidence 44678999999999999999999999874 45556554
No 181
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=89.76 E-value=0.27 Score=47.12 Aligned_cols=40 Identities=13% Similarity=0.138 Sum_probs=36.2
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHcCCC----------cEEEEeCCcc
Q 012768 15 AALEKASVCLLNCGPTGSETLKNLVLGGIG----------SITVIDGSKV 54 (456)
Q Consensus 15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~----------~itlvD~d~v 54 (456)
++|++.+|+++|+|+.|.-+++.|+.+|++ +|.++|..-+
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gl 70 (254)
T cd00762 21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGL 70 (254)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCe
Confidence 468899999999999999999999999997 9999997643
No 182
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.74 E-value=1.2 Score=46.54 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=28.4
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
...|+|+|.|+.|..+|+-|...|. +++..|.
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~-~v~~~D~ 37 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGI-PFAVMDS 37 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCC-eEEEEeC
Confidence 4679999999999999999999997 5888884
No 183
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.72 E-value=1.4 Score=45.96 Aligned_cols=35 Identities=17% Similarity=0.316 Sum_probs=30.4
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
+.+.+|+|+|.|+.|..+|+.|...|. .+++.|..
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~~ 37 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGA-EVAAYDAE 37 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 456799999999999999999999997 58888843
No 184
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=89.70 E-value=2 Score=41.94 Aligned_cols=31 Identities=10% Similarity=0.210 Sum_probs=26.4
Q ss_pred cEEEEcCChhHHHHHHHHHHcCC---CcEEEEeC
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGI---GSITVIDG 51 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv---~~itlvD~ 51 (456)
+|.|||+|.+|..+++.|...|. .++.++|.
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r 36 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSS 36 (277)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeC
Confidence 69999999999999999999983 46777653
No 185
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=89.58 E-value=0.42 Score=49.72 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=32.5
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
+.+.+|+|+|+|++|..+++.|...|+.+++++|.
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r 214 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANR 214 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeC
Confidence 67789999999999999999999999999999874
No 186
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=89.45 E-value=2.3 Score=43.03 Aligned_cols=41 Identities=17% Similarity=0.326 Sum_probs=32.7
Q ss_pred HHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEE--EEeCCc
Q 012768 13 GQAALEKASVCLLNCGPTGSETLKNLVLGGIGSIT--VIDGSK 53 (456)
Q Consensus 13 ~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~it--lvD~d~ 53 (456)
.++--.+.+|.|||+||-|+.++.+|.+.|+..+. .+|.|.
T Consensus 11 ~~~~~~~~~i~viGvGg~G~n~v~~l~~~~~~~~~~iainTD~ 53 (349)
T TIGR00065 11 LIQPSNKAKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDA 53 (349)
T ss_pred hcCcccCCeEEEEEeCCcHHHHHHHHHHcCCCceEEEEEECCH
Confidence 33444567999999999999999999999987554 477765
No 187
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=89.37 E-value=0.99 Score=43.68 Aligned_cols=30 Identities=17% Similarity=0.292 Sum_probs=26.4
Q ss_pred EEEEcC-ChhHHHHHHHHHHcC--C-CcEEEEeC
Q 012768 22 VCLLNC-GPTGSETLKNLVLGG--I-GSITVIDG 51 (456)
Q Consensus 22 VlIiG~-gglG~eiaknLvl~G--v-~~itlvD~ 51 (456)
|.|||+ |.+|..++..|+..| . .+++|+|.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~ 34 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDI 34 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeC
Confidence 689999 889999999999998 4 67999984
No 188
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=89.33 E-value=0.46 Score=46.75 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=31.5
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
.|..++|+|+|+|++|..+|+.|...|. +++++|.
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R 182 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGAR 182 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeC
Confidence 4678999999999999999999999997 7888874
No 189
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.32 E-value=1.5 Score=46.33 Aligned_cols=36 Identities=19% Similarity=0.111 Sum_probs=31.3
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
+++++|+|+|+|-.|..+++-|...|.. +++.|.+.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~-v~~~d~~~ 41 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPA-QALTLFCN 41 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCE-EEEEcCCC
Confidence 5678999999999999999999999997 77777543
No 190
>PRK14982 acyl-ACP reductase; Provisional
Probab=89.32 E-value=0.44 Score=47.92 Aligned_cols=36 Identities=25% Similarity=0.422 Sum_probs=31.4
Q ss_pred HHhcCcEEEEcC-ChhHHHHHHHHHH-cCCCcEEEEeC
Q 012768 16 ALEKASVCLLNC-GPTGSETLKNLVL-GGIGSITVIDG 51 (456)
Q Consensus 16 ~L~~~~VlIiG~-gglG~eiaknLvl-~Gv~~itlvD~ 51 (456)
.|++++|+|+|+ |.+|+++++.|.. .|+.++++++.
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R 189 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVAR 189 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcC
Confidence 477899999998 7899999999985 58999999863
No 191
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=89.29 E-value=0.65 Score=46.17 Aligned_cols=32 Identities=16% Similarity=0.302 Sum_probs=27.9
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
.+|.|+|+|+-|+.+|+-|+..| ..++++..+
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng-~~V~lw~r~ 33 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNG-HEVRLWGRD 33 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcC-CeeEEEecC
Confidence 58999999999999999999999 667777544
No 192
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=89.29 E-value=0.48 Score=47.14 Aligned_cols=37 Identities=22% Similarity=0.332 Sum_probs=32.6
Q ss_pred HHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768 13 GQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 13 ~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD 50 (456)
....|++++|.|||+|.+|..+|+||..+|+ ++++.|
T Consensus 10 ~~~~LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~ 46 (335)
T PRK13403 10 NVELLQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGV 46 (335)
T ss_pred ChhhhCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEE
Confidence 3468999999999999999999999999999 466665
No 193
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=89.25 E-value=0.49 Score=44.55 Aligned_cols=38 Identities=26% Similarity=0.253 Sum_probs=34.6
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
.|+..+|+|.|.|.+|..+|+.|...|.+-+.+.|.+-
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 57889999999999999999999999999999998543
No 194
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=89.19 E-value=2 Score=44.87 Aligned_cols=107 Identities=17% Similarity=0.149 Sum_probs=69.7
Q ss_pred cEEEEcCChh-HHHHHHHHHH----cCCCcEEEEeCCcccccCCCccccccccccCcchHH-HHHHHHHHhCCCCEEEEE
Q 012768 21 SVCLLNCGPT-GSETLKNLVL----GGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAK-SVCAFLQELNDAVKAKFI 94 (456)
Q Consensus 21 ~VlIiG~ggl-G~eiaknLvl----~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~-~~~~~l~~lnp~v~v~~~ 94 (456)
||.|||+|+. +-++++.|+. .+++.|+|+|-|. ..+. .+. .+.+..++.++.++++..
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~---~rl~-------------~v~~l~~~~~~~~g~~~~v~~T 65 (437)
T cd05298 2 KIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDA---ERQE-------------KVAEAVKILFKENYPEIKFVYT 65 (437)
T ss_pred eEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCH---HHHH-------------HHHHHHHHHHHhhCCCeEEEEE
Confidence 7999999996 3367777763 4678999999443 2111 122 233445556767777764
Q ss_pred ecChhhhhcCCcCCCCCCcEEEEcC--CChHHHHHHHHHHHHcCCeEEEEeeccceeeEEe
Q 012768 95 EEYPEALIEMNPPFFSQFTLVVATQ--LGEEKMIKLDRICREANVMLIFARSYGLTGFVRI 153 (456)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~dvVi~~~--~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~ 153 (456)
... .+-++++|.||.+. ...+.+..=-+++.++|+ +...+.|..|..+.
T Consensus 66 tdr--------~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi--~gqET~G~GG~~~a 116 (437)
T cd05298 66 TDP--------EEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGV--VGQETCGPGGFAYG 116 (437)
T ss_pred CCH--------HHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCc--ceecCccHHHHHHH
Confidence 321 33477899999764 334556555678999996 66688888885544
No 195
>PLN00106 malate dehydrogenase
Probab=89.18 E-value=0.7 Score=46.26 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=30.9
Q ss_pred hcCcEEEEcC-ChhHHHHHHHHHHcCCC-cEEEEeCCc
Q 012768 18 EKASVCLLNC-GPTGSETLKNLVLGGIG-SITVIDGSK 53 (456)
Q Consensus 18 ~~~~VlIiG~-gglG~eiaknLvl~Gv~-~itlvD~d~ 53 (456)
...+|+|+|+ |.+|+.++-.|+..|+. .+.|+|-+.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~ 54 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN 54 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 3568999998 99999999999988884 699999544
No 196
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.17 E-value=1.3 Score=44.63 Aligned_cols=29 Identities=17% Similarity=0.116 Sum_probs=25.4
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD 50 (456)
.+|+|+|+|..|+.++..|+..| .++++.
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g--~v~l~~ 36 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG--PTLQWV 36 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--CEEEEe
Confidence 57999999999999999999998 466664
No 197
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.02 E-value=1 Score=45.94 Aligned_cols=34 Identities=15% Similarity=0.075 Sum_probs=28.1
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCC------CcEEEEe
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGI------GSITVID 50 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv------~~itlvD 50 (456)
-+..+|+|+|+|+-|+.+|..|+..|. ..++++.
T Consensus 9 ~~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~ 48 (365)
T PTZ00345 9 CGPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWV 48 (365)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEE
Confidence 345689999999999999999999884 4567764
No 198
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=89.01 E-value=1.9 Score=45.81 Aligned_cols=32 Identities=22% Similarity=0.373 Sum_probs=28.9
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
.+|.|||+|.+|+.+|.+|+.+|. .++++|.+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~ 36 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPH 36 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence 379999999999999999999998 68999864
No 199
>PRK13018 cell division protein FtsZ; Provisional
Probab=88.92 E-value=3.6 Score=42.07 Aligned_cols=37 Identities=22% Similarity=0.461 Sum_probs=31.4
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCC--cEEEEeCCc
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIG--SITVIDGSK 53 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~--~itlvD~d~ 53 (456)
..+.+|.|||+||-|+.++.+|...|+. .+..++.|.
T Consensus 26 ~~~~~I~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~ 64 (378)
T PRK13018 26 FGNPKIVVVGCGGAGNNTINRLYEIGIEGAETIAINTDA 64 (378)
T ss_pred cCCCeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCH
Confidence 4568999999999999999999999987 456677766
No 200
>PRK06545 prephenate dehydrogenase; Validated
Probab=88.91 E-value=1.9 Score=43.74 Aligned_cols=31 Identities=16% Similarity=0.231 Sum_probs=27.0
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
.+|+|||+|.+|..+++.|...|. .++++|.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~-~v~i~~~ 31 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGP-DVFIIGY 31 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCC-CeEEEEe
Confidence 369999999999999999999997 5677764
No 201
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=88.87 E-value=3 Score=41.38 Aligned_cols=34 Identities=9% Similarity=0.321 Sum_probs=28.6
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCc--EEEEeCCcc
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGIGS--ITVIDGSKV 54 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv~~--itlvD~d~v 54 (456)
+|.|||+||-|+.++..|.+.|+.. +..+|.|.-
T Consensus 2 ~i~viGvGg~G~n~v~~l~~~~~~~~~~~a~ntD~~ 37 (304)
T cd02201 2 KIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDAQ 37 (304)
T ss_pred eEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHH
Confidence 6899999999999999999999864 455676653
No 202
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=88.86 E-value=0.44 Score=46.76 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=28.5
Q ss_pred EEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccc
Q 012768 22 VCLLN-CGPTGSETLKNLVLGGIGSITVIDGSKVEV 56 (456)
Q Consensus 22 VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d~v~~ 56 (456)
|||-| +|++|+|+++.|+..|++++.++|.+--..
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l 36 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKL 36 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHH
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHH
Confidence 68887 677999999999999999999999665433
No 203
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=88.81 E-value=0.54 Score=45.79 Aligned_cols=40 Identities=20% Similarity=0.371 Sum_probs=35.8
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHc----CC------CcEEEEeCCcc
Q 012768 15 AALEKASVCLLNCGPTGSETLKNLVLG----GI------GSITVIDGSKV 54 (456)
Q Consensus 15 ~~L~~~~VlIiG~gglG~eiaknLvl~----Gv------~~itlvD~d~v 54 (456)
.+|++.+|+++|+|+.|.-|++.|+.+ |+ ++|.++|.+-+
T Consensus 21 ~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gl 70 (279)
T cd05312 21 KPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGL 70 (279)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCe
Confidence 468899999999999999999999988 99 79999997643
No 204
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=88.81 E-value=1.9 Score=42.55 Aligned_cols=114 Identities=14% Similarity=0.160 Sum_probs=64.6
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecCh--
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP-- 98 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~-- 98 (456)
+|.+||+|-.|..++.+|+..|. .++++|.+.- .. . +. ..|...+....+..+ ..++-+..+....
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~-~v~v~~~~~~-~~----~-~~---~~g~~~~~s~~~~~~--~advVi~~v~~~~~v 69 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGH-QLHVTTIGPV-AD----E-LL---SLGAVSVETARQVTE--ASDIIFIMVPDTPQV 69 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-eEEEEeCCHh-HH----H-HH---HcCCeecCCHHHHHh--cCCEEEEeCCChHHH
Confidence 59999999999999999999996 6788875431 11 1 11 123222222222221 3344444443221
Q ss_pred hhhhcCC---cCCCCCCcEEEE-cCCChHHHHHHHHHHHHcCCeEEEEeecc
Q 012768 99 EALIEMN---PPFFSQFTLVVA-TQLGEEKMIKLDRICREANVMLIFARSYG 146 (456)
Q Consensus 99 ~~~~~~~---~~~~~~~dvVi~-~~~~~~~~~~l~~~~~~~~ip~i~~~~~G 146 (456)
..+.... ......=.+||. ++.+......+.+.+..+++.|+.+-..|
T Consensus 70 ~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsG 121 (292)
T PRK15059 70 EEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSG 121 (292)
T ss_pred HHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCC
Confidence 1111110 111223346664 44556667788888999999888876554
No 205
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=88.80 E-value=1.6 Score=41.36 Aligned_cols=38 Identities=26% Similarity=0.332 Sum_probs=33.3
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 15 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
..|+..+|+|.|.|.+|..+++.|...|.+=+.+.|..
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~ 64 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSD 64 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 34789999999999999999999999998877688753
No 206
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=88.75 E-value=1.7 Score=43.95 Aligned_cols=31 Identities=16% Similarity=0.113 Sum_probs=26.4
Q ss_pred cEEEEcCChhHHHHHHHHHHcCC-------CcEEEEeC
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGI-------GSITVIDG 51 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv-------~~itlvD~ 51 (456)
+|.|+|+|+.|+.+|..|+..|. .+++++..
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~ 38 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVF 38 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEe
Confidence 68999999999999999999883 56777753
No 207
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=88.68 E-value=1 Score=44.05 Aligned_cols=118 Identities=17% Similarity=0.177 Sum_probs=67.1
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecCh-
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP- 98 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~- 98 (456)
.+|.+||+|..|.-+|+||+.+|. .++++|.+.-....+-+ ..|-.-+...++... .-++-+..+...+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~-~v~v~~r~~~ka~~~~~-------~~Ga~~a~s~~eaa~--~aDvVitmv~~~~~ 70 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGH-EVTVYNRTPEKAAELLA-------AAGATVAASPAEAAA--EADVVITMLPDDAA 70 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCC-EEEEEeCChhhhhHHHH-------HcCCcccCCHHHHHH--hCCEEEEecCCHHH
Confidence 479999999999999999999994 57887754322111110 112212222222222 1234444433221
Q ss_pred -hhhhcC-C--cCCCCCCcEEEE-cCCChHHHHHHHHHHHHcCCeEEEEeeccc
Q 012768 99 -EALIEM-N--PPFFSQFTLVVA-TQLGEEKMIKLDRICREANVMLIFARSYGL 147 (456)
Q Consensus 99 -~~~~~~-~--~~~~~~~dvVi~-~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~ 147 (456)
..+.-. + .+..++=.++|+ ++.+......+.+.....+..++++-+.|-
T Consensus 71 V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg 124 (286)
T COG2084 71 VRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGG 124 (286)
T ss_pred HHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCC
Confidence 111111 1 122334456664 456667788899999999999998877664
No 208
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=88.60 E-value=3 Score=43.45 Aligned_cols=108 Identities=16% Similarity=0.119 Sum_probs=70.2
Q ss_pred cEEEEcCChh-HHHHHHHHH----HcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEe
Q 012768 21 SVCLLNCGPT-GSETLKNLV----LGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE 95 (456)
Q Consensus 21 ~VlIiG~ggl-G~eiaknLv----l~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~ 95 (456)
+|.|||.|++ +-++++.|+ ...++.|+|+|-|. ..+.. =...+.+..++.++.++++...
T Consensus 2 KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~---~Rl~~------------v~~l~~~~~~~~g~~~~v~~tt 66 (425)
T cd05197 2 KIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDE---ERLDI------------ILTIAKRYVEEVGADIKFEKTM 66 (425)
T ss_pred EEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCH---HHHHH------------HHHHHHHHHHhhCCCeEEEEeC
Confidence 7999999996 447778877 35579999999443 11110 1123445556677788777644
Q ss_pred cChhhhhcCCcCCCCCCcEEEEcC--CChHHHHHHHHHHHHcCCeEEEEeeccceeeEEe
Q 012768 96 EYPEALIEMNPPFFSQFTLVVATQ--LGEEKMIKLDRICREANVMLIFARSYGLTGFVRI 153 (456)
Q Consensus 96 ~~~~~~~~~~~~~~~~~dvVi~~~--~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~ 153 (456)
.. .+-++++|.||.+. ...+.+..=-++..++|+ +-..+.|..|..+-
T Consensus 67 D~--------~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~--~gqeT~G~GG~~~a 116 (425)
T cd05197 67 DL--------EDAIIDADFVINQFRVGGLTYREKDEQIPLKYGV--IGQETVGPGGTFSG 116 (425)
T ss_pred CH--------HHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCc--ccccccCcchhhhh
Confidence 21 23477899999764 344455555568888886 44788888886554
No 209
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=88.57 E-value=0.46 Score=48.90 Aligned_cols=44 Identities=25% Similarity=0.355 Sum_probs=36.2
Q ss_pred cCcEEEEcCChhHHHHHHHHHHc-CCCcEEEEeCCcccccCCCcc
Q 012768 19 KASVCLLNCGPTGSETLKNLVLG-GIGSITVIDGSKVEVGDLGNN 62 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~-Gv~~itlvD~d~v~~~nl~r~ 62 (456)
...|+|||.|-+|+.+|..|++. |..+++|+|.+.+.....+++
T Consensus 30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~gas~~~ 74 (407)
T TIGR01373 30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRN 74 (407)
T ss_pred cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCcccccc
Confidence 45799999999999999999985 887899999887655444444
No 210
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=88.27 E-value=3.1 Score=42.09 Aligned_cols=94 Identities=15% Similarity=0.106 Sum_probs=57.7
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec-C-
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE-Y- 97 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~-~- 97 (456)
.+|+|+|+|++|.-.+..+-+.|.+.+.++|.+. .|.+.+++ ....-.+..... .
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~-------------------~Rl~~A~~----~~g~~~~~~~~~~~~ 226 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP-------------------ERLELAKE----AGGADVVVNPSEDDA 226 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH-------------------HHHHHHHH----hCCCeEeecCccccH
Confidence 3799999999999999999999999999998433 23333322 111111111000 0
Q ss_pred hhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCe
Q 012768 98 PEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVM 138 (456)
Q Consensus 98 ~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip 138 (456)
...+.+.. -=.++|+||.|..+........++++..+.-
T Consensus 227 ~~~~~~~t--~g~g~D~vie~~G~~~~~~~ai~~~r~gG~v 265 (350)
T COG1063 227 GAEILELT--GGRGADVVIEAVGSPPALDQALEALRPGGTV 265 (350)
T ss_pred HHHHHHHh--CCCCCCEEEECCCCHHHHHHHHHHhcCCCEE
Confidence 00010000 0136999998888766677777788777764
No 211
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=88.24 E-value=0.27 Score=50.87 Aligned_cols=43 Identities=16% Similarity=0.286 Sum_probs=37.7
Q ss_pred ccccccCHHHH----HHHhcCcEEEEcCChhHHHHHHHHHHcCCCcE
Q 012768 4 STLRIWGEQGQ----AALEKASVCLLNCGPTGSETLKNLVLGGIGSI 46 (456)
Q Consensus 4 RQlrlwG~~~q----~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~i 46 (456)
+|.|+|+.+.. ..|++++|+|||+|+.|..-|-||--+|+..+
T Consensus 17 ~~~r~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVv 63 (487)
T PRK05225 17 GKCRFMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDIS 63 (487)
T ss_pred ccceecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCccccceeE
Confidence 46789998766 78999999999999999999999999999543
No 212
>PRK09242 tropinone reductase; Provisional
Probab=88.02 E-value=1.8 Score=41.11 Aligned_cols=34 Identities=9% Similarity=0.187 Sum_probs=28.8
Q ss_pred HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768 16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD 50 (456)
+|++++++|.| .|++|.++++.|+..|. ++++++
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~ 40 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVA 40 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEe
Confidence 36678999998 58999999999999997 577776
No 213
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=87.99 E-value=0.39 Score=47.83 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=34.4
Q ss_pred ccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 8 IWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 8 lwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
-|.......+..++|.|+|+|.+|.++|+.|...|+ ++..+|.
T Consensus 125 ~w~~~~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~ 167 (312)
T PRK15469 125 HWQPLPEYHREDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSR 167 (312)
T ss_pred CcCCCCCCCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence 365333346888999999999999999999999998 4667764
No 214
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.92 E-value=1.3 Score=41.76 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=28.8
Q ss_pred HhcCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEe
Q 012768 17 LEKASVCLLNC-GPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 17 L~~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD 50 (456)
|++.+++|.|+ |++|..+++.|...|. +++++|
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~ 36 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALID 36 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEe
Confidence 56789999996 9999999999999997 577776
No 215
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.75 E-value=3 Score=41.35 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=30.2
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD 50 (456)
.++|||+|+|++|--...-+-..|.+++.++|
T Consensus 170 Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d 201 (354)
T KOG0024|consen 170 GSKVLVLGAGPIGLLTGLVAKAMGASDVVITD 201 (354)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCcEEEee
Confidence 58999999999999999999999999999998
No 216
>PLN02366 spermidine synthase
Probab=87.63 E-value=3.1 Score=41.38 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=23.2
Q ss_pred hcCcEEEEcCChhHHHHHHHHHH-cCCCcEEEEeCCc
Q 012768 18 EKASVCLLNCGPTGSETLKNLVL-GGIGSITVIDGSK 53 (456)
Q Consensus 18 ~~~~VlIiG~gglG~eiaknLvl-~Gv~~itlvD~d~ 53 (456)
...+||++|+|+-| +++.+++ .++.+++++|-|.
T Consensus 91 ~pkrVLiIGgG~G~--~~rellk~~~v~~V~~VEiD~ 125 (308)
T PLN02366 91 NPKKVLVVGGGDGG--VLREIARHSSVEQIDICEIDK 125 (308)
T ss_pred CCCeEEEEcCCccH--HHHHHHhCCCCCeEEEEECCH
Confidence 35789999987522 2334444 5789999998554
No 217
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=87.60 E-value=2.3 Score=45.15 Aligned_cols=64 Identities=20% Similarity=0.149 Sum_probs=47.5
Q ss_pred HHHHHHhcCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCE
Q 012768 12 QGQAALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVK 90 (456)
Q Consensus 12 ~~q~~L~~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~ 90 (456)
.-+.-+.+++|+|-|+ |++|+|+++.++..++++|.++|.|-. +-..+...|++..|..+
T Consensus 243 ~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~-------------------~~~~i~~el~~~~~~~~ 303 (588)
T COG1086 243 LIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEY-------------------KLYLIDMELREKFPELK 303 (588)
T ss_pred HHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchH-------------------HHHHHHHHHHhhCCCcc
Confidence 3456789999999986 558999999999999999999986553 34444455666655555
Q ss_pred EEEE
Q 012768 91 AKFI 94 (456)
Q Consensus 91 v~~~ 94 (456)
+..+
T Consensus 304 ~~~~ 307 (588)
T COG1086 304 LRFY 307 (588)
T ss_pred eEEE
Confidence 4443
No 218
>PLN02240 UDP-glucose 4-epimerase
Probab=87.57 E-value=4.4 Score=40.46 Aligned_cols=33 Identities=33% Similarity=0.519 Sum_probs=28.2
Q ss_pred HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768 17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD 50 (456)
|++++|+|.| .|.+|..+++.|+..|. +++++|
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~ 36 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVID 36 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEe
Confidence 4568999998 58899999999999995 688876
No 219
>PLN02688 pyrroline-5-carboxylate reductase
Probab=87.49 E-value=3.2 Score=40.02 Aligned_cols=29 Identities=21% Similarity=0.409 Sum_probs=24.5
Q ss_pred cEEEEcCChhHHHHHHHHHHcCC---CcEEEE
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGI---GSITVI 49 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv---~~itlv 49 (456)
+|.+||+|.+|+.++++|...|. ..++++
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~ 33 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTA 33 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEE
Confidence 69999999999999999999985 245554
No 220
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=87.46 E-value=2.3 Score=41.40 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=24.8
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHc--CCCcEEEEe
Q 012768 18 EKASVCLLNCGPTGSETLKNLVLG--GIGSITVID 50 (456)
Q Consensus 18 ~~~~VlIiG~gglG~eiaknLvl~--Gv~~itlvD 50 (456)
+..+|.|||+|.+|..++++|... |+.-..++|
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~d 39 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAV 39 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 457899999999999999999863 443223444
No 221
>PLN02928 oxidoreductase family protein
Probab=87.41 E-value=0.45 Score=48.12 Aligned_cols=42 Identities=26% Similarity=0.265 Sum_probs=34.4
Q ss_pred cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 9 WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 9 wG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
|+...-..|..++|.|+|+|.+|.++|+.|.-.|. +++.+|.
T Consensus 149 w~~~~~~~l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr 190 (347)
T PLN02928 149 LGEPIGDTLFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRR 190 (347)
T ss_pred cccccccCCCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECC
Confidence 54322235899999999999999999999999998 6888875
No 222
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=87.36 E-value=2.7 Score=46.43 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=30.6
Q ss_pred HHHHHHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 12 QGQAALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 12 ~~q~~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
.+...-++.+|+|.| +|-+|+.+++.|...|=-+++.+|.
T Consensus 308 ~~~~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r 348 (660)
T PRK08125 308 PACSAKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDI 348 (660)
T ss_pred chhhhhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeC
Confidence 344556778899999 5779999999999864346777774
No 223
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=87.24 E-value=1.6 Score=42.27 Aligned_cols=108 Identities=8% Similarity=0.084 Sum_probs=58.9
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEE---EeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITV---IDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE 96 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itl---vD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~ 96 (456)
.||.|||||.+|..+++.|..-+...+.+ .|.+.-....+ .+..++-.-.+.|....|++-+++-
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~----------~~~~~~~~~l~~ll~~~~DlVVE~A-- 70 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPAL----------AGRVALLDGLPGLLAWRPDLVVEAA-- 70 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHh----------hccCcccCCHHHHhhcCCCEEEECC--
Confidence 58999999999999999986544433433 33221000011 0111111112333345677666542
Q ss_pred ChhhhhcCCcCCCC-CCcEEEEcC---CChHHHHHHHHHHHHcCCeE
Q 012768 97 YPEALIEMNPPFFS-QFTLVVATQ---LGEEKMIKLDRICREANVML 139 (456)
Q Consensus 97 ~~~~~~~~~~~~~~-~~dvVi~~~---~~~~~~~~l~~~~~~~~ip~ 139 (456)
.+..+.+-.+..++ +.|+++.+. .+......+.+.|++.+..+
T Consensus 71 ~~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i 117 (267)
T PRK13301 71 GQQAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARI 117 (267)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEE
Confidence 23333222234454 789998653 34456778888888877543
No 224
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.23 E-value=2.3 Score=44.39 Aligned_cols=35 Identities=29% Similarity=0.328 Sum_probs=30.4
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
+++++|+|+|.|++|..+|+.|...|. .+++.|.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~ 37 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGK 37 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 457889999999999999999999997 58888744
No 225
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=87.05 E-value=5 Score=38.95 Aligned_cols=32 Identities=19% Similarity=0.360 Sum_probs=21.6
Q ss_pred cCcEEEEcCChhHHHHHHHHHHc-CCCcEEEEeCC
Q 012768 19 KASVCLLNCGPTGSETLKNLVLG-GIGSITVIDGS 52 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~-Gv~~itlvD~d 52 (456)
..+||++|+|. |. +++.++.. ++.+++++|-|
T Consensus 73 p~~VL~iG~G~-G~-~~~~ll~~~~~~~v~~veid 105 (270)
T TIGR00417 73 PKHVLVIGGGD-GG-VLREVLKHKSVEKATLVDID 105 (270)
T ss_pred CCEEEEEcCCc-hH-HHHHHHhCCCcceEEEEeCC
Confidence 46999999976 33 33444444 48889999854
No 226
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=87.01 E-value=2.9 Score=39.80 Aligned_cols=34 Identities=18% Similarity=0.362 Sum_probs=27.0
Q ss_pred HHHhcCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEE
Q 012768 15 AALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVI 49 (456)
Q Consensus 15 ~~L~~~~VlIiG~-gglG~eiaknLvl~Gv~~itlv 49 (456)
+.....+|+|+|+ |.+|..+++.|+..|.. ++.+
T Consensus 13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~~-V~~~ 47 (251)
T PLN00141 13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGFA-VKAG 47 (251)
T ss_pred ccccCCeEEEECCCcHHHHHHHHHHHhCCCE-EEEE
Confidence 3455789999995 88999999999998864 5443
No 227
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=86.90 E-value=1.2 Score=44.06 Aligned_cols=33 Identities=27% Similarity=0.437 Sum_probs=28.9
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
.+|.|||+|..|..++.+|+..|. .++++|.+.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~~ 34 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGH-QLQVFDVNP 34 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence 379999999999999999999996 688888653
No 228
>PRK12367 short chain dehydrogenase; Provisional
Probab=86.87 E-value=1.1 Score=42.92 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=33.8
Q ss_pred HHHHHHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 12 QGQAALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 12 ~~q~~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
-.|.+|+.++++|.| .||+|.++++.|+..|. ++.+++.+
T Consensus 7 ~~~~~l~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~ 47 (245)
T PRK12367 7 MAQSTWQGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHS 47 (245)
T ss_pred hhHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 368899999999998 57899999999999997 56766643
No 229
>PRK08655 prephenate dehydrogenase; Provisional
Probab=86.85 E-value=1.8 Score=45.30 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=26.4
Q ss_pred cEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 21 SVCLLN-CGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 21 ~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
+|+|+| +|++|..+++.|...|. .++++|.
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r 32 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGR 32 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 699997 89999999999999996 5788774
No 230
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=86.84 E-value=4.8 Score=43.33 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=25.5
Q ss_pred hcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768 18 EKASVCLLN-CGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 18 ~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD 50 (456)
....|+|.| .|++|..+++.|+..|. ++++++
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~ 111 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGV 111 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEe
Confidence 455688888 58999999999999996 466554
No 231
>PRK01581 speE spermidine synthase; Validated
Probab=86.82 E-value=3.9 Score=41.48 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=25.7
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
.....+||++|+| .|..+..-|-..++.++++||-|.
T Consensus 148 h~~PkrVLIIGgG-dG~tlrelLk~~~v~~It~VEIDp 184 (374)
T PRK01581 148 VIDPKRVLILGGG-DGLALREVLKYETVLHVDLVDLDG 184 (374)
T ss_pred CCCCCEEEEECCC-HHHHHHHHHhcCCCCeEEEEeCCH
Confidence 3456799999975 555444444445789999999554
No 232
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=86.75 E-value=0.91 Score=42.75 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=29.0
Q ss_pred HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
.+++++|+|.| .|++|..+++.|...|. ++++++.
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r 38 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDI 38 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence 35678899998 68899999999999997 5777653
No 233
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=86.72 E-value=4.9 Score=41.28 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=26.6
Q ss_pred hcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 18 EKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 18 ~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
+..+|+|.| .|.+|..+++.|...|. ++++++.
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R 92 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAR 92 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEe
Confidence 345899998 58899999999999996 4666653
No 234
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=86.58 E-value=0.89 Score=44.91 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=31.7
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
+..++|+|+|.|++|..+++.|...|. +++++|..
T Consensus 150 l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~ 184 (296)
T PRK08306 150 IHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARK 184 (296)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 468999999999999999999999997 89998744
No 235
>PLN02572 UDP-sulfoquinovose synthase
Probab=86.49 E-value=1.9 Score=45.16 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=30.2
Q ss_pred HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
++++.+|+|.| +|.+|+.+++.|+..|. .++++|.
T Consensus 44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G~-~V~~~d~ 79 (442)
T PLN02572 44 SSKKKKVMVIGGDGYCGWATALHLSKRGY-EVAIVDN 79 (442)
T ss_pred cccCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEec
Confidence 56778899998 68899999999999996 5888884
No 236
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=86.48 E-value=0.79 Score=49.11 Aligned_cols=34 Identities=12% Similarity=0.193 Sum_probs=30.7
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
+++++|+|+|+||+|..+++.|+..|+ ++++++.
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR 410 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANR 410 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcC
Confidence 567889999999999999999999999 8999863
No 237
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=86.47 E-value=6.2 Score=38.11 Aligned_cols=92 Identities=14% Similarity=0.225 Sum_probs=54.2
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCcccccc----ccccCcchHHHHHHHHHHhCCCCEEEEEe
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLD----ESCVGESKAKSVCAFLQELNDAVKAKFIE 95 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~----~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~ 95 (456)
.+|+|+|+.+-|..+++.|...|..-+..+= ++.+...+.. .--.|....+.+++.+++
T Consensus 1 m~ILvlGGT~egr~la~~L~~~g~~v~~s~~------t~~~~~~~~~~g~~~v~~g~l~~~~l~~~l~~----------- 63 (256)
T TIGR00715 1 MTVLLMGGTVDSRAIAKGLIAQGIEILVTVT------TSEGKHLYPIHQALTVHTGALDPQELREFLKR----------- 63 (256)
T ss_pred CeEEEEechHHHHHHHHHHHhCCCeEEEEEc------cCCccccccccCCceEEECCCCHHHHHHHHHh-----------
Confidence 3799999988899999999999854333321 1111111100 000122222222222221
Q ss_pred cChhhhhcCCcCCCCCCcEEEEcCCChHH--HHHHHHHHHHcCCeEEEE
Q 012768 96 EYPEALIEMNPPFFSQFTLVVATQLGEEK--MIKLDRICREANVMLIFA 142 (456)
Q Consensus 96 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~--~~~l~~~~~~~~ip~i~~ 142 (456)
.+.|+||+++.+... ...+.+.|.+.++|++-.
T Consensus 64 --------------~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 64 --------------HSIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred --------------cCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 157899999888765 456778999999997754
No 238
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=86.41 E-value=2.8 Score=40.98 Aligned_cols=98 Identities=16% Similarity=0.212 Sum_probs=58.8
Q ss_pred cEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChh
Q 012768 21 SVCLLNC-GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPE 99 (456)
Q Consensus 21 ~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~ 99 (456)
+|||.|. |-||.++.+.|. +-..++-.|...++ -.-.+.+.+.+++..|++-|++-.-...
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~~D----------------itd~~~v~~~i~~~~PDvVIn~AAyt~v 63 (281)
T COG1091 2 KILITGANGQLGTELRRALP--GEFEVIATDRAELD----------------ITDPDAVLEVIRETRPDVVINAAAYTAV 63 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC--CCceEEeccCcccc----------------ccChHHHHHHHHhhCCCEEEECcccccc
Confidence 4999995 559999999988 44445555543322 2244667789999999998775321100
Q ss_pred hhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEee
Q 012768 100 ALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARS 144 (456)
Q Consensus 100 ~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~ 144 (456)
+-.+.+++ ... .-+......+.+.|++.|.++|+.++
T Consensus 64 D~aE~~~e------~A~--~vNa~~~~~lA~aa~~~ga~lVhiST 100 (281)
T COG1091 64 DKAESEPE------LAF--AVNATGAENLARAAAEVGARLVHIST 100 (281)
T ss_pred ccccCCHH------HHH--HhHHHHHHHHHHHHHHhCCeEEEeec
Confidence 00001100 000 01223345677899999999998875
No 239
>PRK13243 glyoxylate reductase; Reviewed
Probab=86.40 E-value=0.87 Score=45.81 Aligned_cols=36 Identities=11% Similarity=0.126 Sum_probs=31.9
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 15 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
..|..++|.|+|+|.+|..+|+.|...|. ++..+|.
T Consensus 146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~ 181 (333)
T PRK13243 146 YDVYGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSR 181 (333)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence 35899999999999999999999999997 5777774
No 240
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=86.39 E-value=3.6 Score=40.58 Aligned_cols=34 Identities=12% Similarity=0.048 Sum_probs=28.9
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
+..+|+|+|+|++|..++.-+...|...+.++|.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~ 177 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET 177 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence 4568999999999999998888889988877763
No 241
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.38 E-value=2 Score=44.89 Aligned_cols=38 Identities=24% Similarity=0.232 Sum_probs=31.3
Q ss_pred HHHhc-CcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCC
Q 012768 15 AALEK-ASVCLLNCGPTGSETLKNLVLGGI-GSITVIDGS 52 (456)
Q Consensus 15 ~~L~~-~~VlIiG~gglG~eiaknLvl~Gv-~~itlvD~d 52 (456)
.++.+ .+|+|+|.|+.|...+..|...|- -.+++.|..
T Consensus 2 ~~~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~ 41 (438)
T PRK04663 2 DRWQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTR 41 (438)
T ss_pred CcccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 35556 789999999999999999999965 568888843
No 242
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=86.35 E-value=0.99 Score=45.76 Aligned_cols=44 Identities=25% Similarity=0.365 Sum_probs=37.2
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCcc
Q 012768 18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNN 62 (456)
Q Consensus 18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~ 62 (456)
.+.+|+|||.|-+|..+|-.|++.|. +++++|.+.+...+-+++
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~~~~g~s~~~ 46 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEAGGGAAGRN 46 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCccCCcchhcc
Confidence 46789999999999999999999999 999999888755444443
No 243
>PRK06046 alanine dehydrogenase; Validated
Probab=86.34 E-value=3 Score=41.76 Aligned_cols=75 Identities=17% Similarity=0.205 Sum_probs=50.4
Q ss_pred hcCcEEEEcCChhHHHHHHHHH-HcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768 18 EKASVCLLNCGPTGSETLKNLV-LGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE 96 (456)
Q Consensus 18 ~~~~VlIiG~gglG~eiaknLv-l~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~ 96 (456)
...+|.|+|+|+.|...+.+|. ..++..+.++|.+. .+++.+++.+.+..+ +.+....
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~-------------------~~~~~~~~~~~~~~~-~~v~~~~- 186 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTK-------------------SSAEKFVERMSSVVG-CDVTVAE- 186 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCH-------------------HHHHHHHHHHHhhcC-ceEEEeC-
Confidence 3578999999999999999997 56899999987332 466666666654333 3443332
Q ss_pred ChhhhhcCCcCCCCCCcEEEEcCCC
Q 012768 97 YPEALIEMNPPFFSQFTLVVATQLG 121 (456)
Q Consensus 97 ~~~~~~~~~~~~~~~~dvVi~~~~~ 121 (456)
+.+ +.+. .|+|++|+.+
T Consensus 187 ~~~-------~~l~-aDiVv~aTps 203 (326)
T PRK06046 187 DIE-------EACD-CDILVTTTPS 203 (326)
T ss_pred CHH-------HHhh-CCEEEEecCC
Confidence 211 2233 8999977754
No 244
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=86.25 E-value=0.96 Score=44.44 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=29.5
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
.+|.|+|+|..|+.+|..|+..|. .++++|.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 579999999999999999999998 699998543
No 245
>PRK05854 short chain dehydrogenase; Provisional
Probab=86.24 E-value=2.4 Score=42.05 Aligned_cols=34 Identities=12% Similarity=0.129 Sum_probs=28.3
Q ss_pred HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768 16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD 50 (456)
.|++++++|.| .+|+|.++++.|+..|. ++.+++
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~ 45 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPV 45 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEe
Confidence 46778899998 68899999999999996 577665
No 246
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=86.12 E-value=4.1 Score=39.96 Aligned_cols=31 Identities=32% Similarity=0.413 Sum_probs=26.9
Q ss_pred EEEEc-CChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 22 VCLLN-CGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 22 VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
|+|.| +|-+|+++++.|...|...+.++|..
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~ 33 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNL 33 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecCC
Confidence 78888 68899999999999998778888854
No 247
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=86.11 E-value=1.1 Score=44.00 Aligned_cols=32 Identities=31% Similarity=0.426 Sum_probs=27.9
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
.+|.|||+|.+|..++++|+..|. .++++|.+
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 479999999999999999999996 47788754
No 248
>PRK08818 prephenate dehydrogenase; Provisional
Probab=85.99 E-value=1.9 Score=43.94 Aligned_cols=34 Identities=15% Similarity=0.019 Sum_probs=27.7
Q ss_pred hcCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 18 EKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 18 ~~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
.+-+|+|||+ |.+|..+++.|-...-..++.+|.
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~ 37 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDP 37 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 4678999999 999999999998653345777775
No 249
>PRK06199 ornithine cyclodeaminase; Validated
Probab=85.94 E-value=2.5 Score=43.25 Aligned_cols=76 Identities=17% Similarity=0.251 Sum_probs=54.8
Q ss_pred cCcEEEEcCChhHHHHHHHHHH--cCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCC-EEEEEe
Q 012768 19 KASVCLLNCGPTGSETLKNLVL--GGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAV-KAKFIE 95 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl--~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v-~v~~~~ 95 (456)
.+++.|+|+|.-+..-++.+.. .++.++.++|.+ ..|+++.++.+.+..+.+ ++.+.+
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~-------------------~~~a~~f~~~~~~~~~~~~~v~~~~ 215 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRG-------------------QKSLDSFATWVAETYPQITNVEVVD 215 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCC-------------------HHHHHHHHHHHHHhcCCCceEEEeC
Confidence 4789999999999999988865 469999998733 357888888888776544 455432
Q ss_pred cChhhhhcCCcCCCCCCcEEEEcCCC
Q 012768 96 EYPEALIEMNPPFFSQFTLVVATQLG 121 (456)
Q Consensus 96 ~~~~~~~~~~~~~~~~~dvVi~~~~~ 121 (456)
+. .+.+.++|+|++|+.+
T Consensus 216 -s~-------~eav~~ADIVvtaT~s 233 (379)
T PRK06199 216 -SI-------EEVVRGSDIVTYCNSG 233 (379)
T ss_pred -CH-------HHHHcCCCEEEEccCC
Confidence 22 2335689999976643
No 250
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=85.89 E-value=2.4 Score=35.22 Aligned_cols=87 Identities=16% Similarity=0.246 Sum_probs=50.3
Q ss_pred cEEEEcCChhHHHHHHHHHHcC--CCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecCh
Q 012768 21 SVCLLNCGPTGSETLKNLVLGG--IGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP 98 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~G--v~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~ 98 (456)
+|.|||+|..|...+..+...+ +.-..++|.+. .+++.++ +.. .+. ..+ +.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~-------------------~~~~~~~----~~~-~~~--~~~-~~ 54 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDP-------------------ERAEAFA----EKY-GIP--VYT-DL 54 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSH-------------------HHHHHHH----HHT-TSE--EES-SH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCH-------------------HHHHHHH----HHh-ccc--chh-HH
Confidence 7899999999999999998873 32233555322 2333332 222 222 222 22
Q ss_pred hhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEE
Q 012768 99 EALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLI 140 (456)
Q Consensus 99 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i 140 (456)
+.+.+. .+.|+|+.++.+ .....+...|.+.|++++
T Consensus 55 ~~ll~~-----~~~D~V~I~tp~-~~h~~~~~~~l~~g~~v~ 90 (120)
T PF01408_consen 55 EELLAD-----EDVDAVIIATPP-SSHAEIAKKALEAGKHVL 90 (120)
T ss_dssp HHHHHH-----TTESEEEEESSG-GGHHHHHHHHHHTTSEEE
T ss_pred HHHHHh-----hcCCEEEEecCC-cchHHHHHHHHHcCCEEE
Confidence 233211 167888877765 345566667777887643
No 251
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=85.85 E-value=2.1 Score=40.80 Aligned_cols=34 Identities=12% Similarity=0.117 Sum_probs=29.3
Q ss_pred HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768 16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD 50 (456)
++++++|+|.| .|++|..+++.|+..|. ++++++
T Consensus 9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~ 43 (259)
T PRK08213 9 DLSGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSA 43 (259)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEe
Confidence 46788999998 68999999999999998 577765
No 252
>PRK06436 glycerate dehydrogenase; Provisional
Probab=85.81 E-value=0.61 Score=46.26 Aligned_cols=43 Identities=19% Similarity=0.156 Sum_probs=34.6
Q ss_pred cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 9 WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 9 wG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
|.......|..++|.|+|+|.+|.++|+.|...|+ ++..+|..
T Consensus 112 w~~~~~~~L~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r~ 154 (303)
T PRK06436 112 FKQSPTKLLYNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTRS 154 (303)
T ss_pred CCCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCC
Confidence 54333457999999999999999999998877787 57777753
No 253
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=85.77 E-value=0.91 Score=45.91 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=31.2
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV 54 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v 54 (456)
...|+|||.|-+|+.+|..|++.|. +++|+|.+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCC-eEEEEecccC
Confidence 4579999999999999999999996 6999997654
No 254
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=85.77 E-value=3.9 Score=40.12 Aligned_cols=29 Identities=31% Similarity=0.393 Sum_probs=20.9
Q ss_pred CcEEEEcC--ChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 20 ASVCLLNC--GPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 20 ~~VlIiG~--gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
.+|||||. ||+.-|++|.+ .+.++++||-
T Consensus 78 k~VLiiGgGdG~tlRevlkh~---~ve~i~~VEI 108 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHL---PVERITMVEI 108 (282)
T ss_pred CeEEEECCCccHHHHHHHhcC---CcceEEEEEc
Confidence 49999984 55556666654 4889999873
No 255
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=85.67 E-value=1.5 Score=45.26 Aligned_cols=110 Identities=16% Similarity=0.119 Sum_probs=66.8
Q ss_pred hcCcEEEEcCChhHH-HHHHHHH----HcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEE
Q 012768 18 EKASVCLLNCGPTGS-ETLKNLV----LGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAK 92 (456)
Q Consensus 18 ~~~~VlIiG~gglG~-eiaknLv----l~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~ 92 (456)
++-+|.+||.|+++. +.+..++ ...+..|.|+|-|. +.+. -=...+.+.+++.++.++++
T Consensus 2 ~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~---~r~~------------~i~~~~~~~v~~~g~~~kv~ 66 (442)
T COG1486 2 KKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDE---ERLK------------IIAILAKKLVEEAGAPVKVE 66 (442)
T ss_pred CcceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCH---HHHH------------HHHHHHHHHHHhhCCCeEEE
Confidence 456899999999864 3333332 44667889988322 1111 01225557778888888887
Q ss_pred EEecChhhhhcCCcCCCCCCcEEEEcCC--ChHHHHHHHHHHHHcCCeEEEEeeccceeeEE
Q 012768 93 FIEEYPEALIEMNPPFFSQFTLVVATQL--GEEKMIKLDRICREANVMLIFARSYGLTGFVR 152 (456)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~dvVi~~~~--~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~ 152 (456)
.... . .+.++++|.|+.+-. ..+.+..=-++..++|+ +-..+.|..|+++
T Consensus 67 ~ttd-~-------~eAl~gAdfVi~~~rvG~l~~r~~De~IplkyG~--~gqET~G~GGi~~ 118 (442)
T COG1486 67 ATTD-R-------REALEGADFVITQIRVGGLEAREKDERIPLKHGL--YGQETNGPGGIFY 118 (442)
T ss_pred EecC-H-------HHHhcCCCEEEEEEeeCCcccchhhhccchhhCc--cccccccccHHHh
Confidence 6542 1 234778999997643 33344444456666665 4477788777643
No 256
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=85.56 E-value=1 Score=45.13 Aligned_cols=36 Identities=19% Similarity=0.284 Sum_probs=30.8
Q ss_pred HHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768 14 QAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 14 q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD 50 (456)
...|++++|.|||+|..|..+|++|..+|+ ++.+.+
T Consensus 12 ~~~L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~ 47 (330)
T PRK05479 12 LSLIKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGL 47 (330)
T ss_pred hhhhCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEE
Confidence 356889999999999999999999999998 455544
No 257
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.55 E-value=3.7 Score=42.79 Aligned_cols=35 Identities=23% Similarity=0.375 Sum_probs=30.3
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
+.+++|+|+|.|+.|..+++-|...|. +++..|..
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~-~v~~~D~~ 38 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGV-TPRVIDTR 38 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 456789999999999999999999997 68888854
No 258
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=85.45 E-value=1 Score=41.06 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=26.8
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
+|.|+|+|..|.-+|-.+++.|. +++++|.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECCh
Confidence 68999999999999999999996 599999644
No 259
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=85.39 E-value=1.1 Score=44.33 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=31.0
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCccc
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVE 55 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~ 55 (456)
.|+|||.|-+|+.+|..|++.|. +++|+|.+.+.
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~-~V~l~e~~~~~ 34 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGH-SVTLLERGDIG 34 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTS-EEEEEESSSTT
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-eEEEEeecccc
Confidence 48999999999999999999999 89999988553
No 260
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=85.38 E-value=1.1 Score=45.00 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=32.3
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 15 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
..|+..+|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~ 178 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAY 178 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence 46899999999999999999999999987 57888743
No 261
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=85.30 E-value=0.86 Score=46.57 Aligned_cols=40 Identities=23% Similarity=0.381 Sum_probs=36.5
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHcCCC--cEEEEeCCcc
Q 012768 15 AALEKASVCLLNCGPTGSETLKNLVLGGIG--SITVIDGSKV 54 (456)
Q Consensus 15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~--~itlvD~d~v 54 (456)
++|+..+|++.|+|+.|..+++.|+..|+. +|.++|..-+
T Consensus 195 k~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~ 236 (432)
T COG0281 195 KKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGL 236 (432)
T ss_pred CCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCc
Confidence 478999999999999999999999999998 9999996543
No 262
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.30 E-value=1.1 Score=43.99 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=29.2
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
-.+|.|||+|..|..+|.+|+..|. .++++|.+
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~ 36 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVS 36 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 3689999999999999999999997 58888844
No 263
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=85.21 E-value=1.1 Score=46.05 Aligned_cols=33 Identities=27% Similarity=0.453 Sum_probs=30.4
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
++|+|||.|-+|+.+|..|++.|. +++++|.+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 589999999999999999999996 699999875
No 264
>PRK15076 alpha-galactosidase; Provisional
Probab=85.18 E-value=4.4 Score=42.28 Aligned_cols=108 Identities=12% Similarity=0.168 Sum_probs=61.6
Q ss_pred CcEEEEcCChhHHHHHH--HHH-HcCC--CcEEEEeCCcccccCCCccccccccccCcchHH---H-HHHHHHHhCCCCE
Q 012768 20 ASVCLLNCGPTGSETLK--NLV-LGGI--GSITVIDGSKVEVGDLGNNFMLDESCVGESKAK---S-VCAFLQELNDAVK 90 (456)
Q Consensus 20 ~~VlIiG~gglG~eiak--nLv-l~Gv--~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~---~-~~~~l~~lnp~v~ 90 (456)
.+|.|||+|++|...+- .++ ..+. ..++|+|-+. .|++ + +.+.+..+.+.++
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~-------------------er~~~~~~l~~~~~~~~~~~~~ 62 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDP-------------------ERLEESEIVARKLAESLGASAK 62 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCH-------------------HHHHHHHHHHHHHHHhcCCCeE
Confidence 47999999998855544 665 2333 3799998432 1222 2 3334444555566
Q ss_pred EEEEecChhhhhcCCcCCCCCCcEEEEcCCC--hHHHHHHH-HHHHHcCCeEEEEeeccceeeEEee
Q 012768 91 AKFIEEYPEALIEMNPPFFSQFTLVVATQLG--EEKMIKLD-RICREANVMLIFARSYGLTGFVRIS 154 (456)
Q Consensus 91 v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~--~~~~~~l~-~~~~~~~ip~i~~~~~G~~G~v~~~ 154 (456)
++.... . .+.++++|+||.+... ........ ++..++|+--=...+.|..|..+..
T Consensus 63 i~~ttD-~-------~eal~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~ 121 (431)
T PRK15076 63 ITATTD-R-------REALQGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRAL 121 (431)
T ss_pred EEEECC-H-------HHHhCCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhh
Confidence 654321 1 2335689999977543 23232233 4777888752223677777765553
No 265
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=85.10 E-value=2.5 Score=44.16 Aligned_cols=75 Identities=12% Similarity=0.054 Sum_probs=48.3
Q ss_pred cCcEEEEcC-ChhHHHHHHHHHHc-------CCC-cEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhC-CC
Q 012768 19 KASVCLLNC-GPTGSETLKNLVLG-------GIG-SITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELN-DA 88 (456)
Q Consensus 19 ~~~VlIiG~-gglG~eiaknLvl~-------Gv~-~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~ln-p~ 88 (456)
-.+|.|+|+ |.+|+.+|-.|+.. |+. ++.++| +.+.|++..+.-|+.-. |.
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD-------------------~~~~~a~G~amDL~daa~~~ 160 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSE-------------------RSKQALEGVAMELEDSLYPL 160 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEc-------------------CCcchhHHHHHHHHHhhhhh
Confidence 358999999 99999999999988 553 466665 33345655555555543 32
Q ss_pred C-EEEEEecChhhhhcCCcCCCCCCcEEEEcCC
Q 012768 89 V-KAKFIEEYPEALIEMNPPFFSQFTLVVATQL 120 (456)
Q Consensus 89 v-~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~ 120 (456)
. ++.+.. .+.+.+++.|+||.+..
T Consensus 161 ~~~v~i~~--------~~ye~~kdaDiVVitAG 185 (444)
T PLN00112 161 LREVSIGI--------DPYEVFQDAEWALLIGA 185 (444)
T ss_pred cCceEEec--------CCHHHhCcCCEEEECCC
Confidence 2 222111 12345779999997743
No 266
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.09 E-value=1.2 Score=43.51 Aligned_cols=32 Identities=16% Similarity=0.359 Sum_probs=29.0
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
.+|+|||+|-+|+.+|..|+..|. .++++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCC
Confidence 479999999999999999999998 79999854
No 267
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=85.06 E-value=2.9 Score=39.28 Aligned_cols=32 Identities=25% Similarity=0.461 Sum_probs=22.8
Q ss_pred cEEEEcCChhHHHHHHHHHHcC---CCcEEEEeCCc
Q 012768 21 SVCLLNCGPTGSETLKNLVLGG---IGSITVIDGSK 53 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~G---v~~itlvD~d~ 53 (456)
+|.|||||++|..+++-+ +-| +.-+.+.|.+.
T Consensus 2 ~vgiVGcGaIG~~l~e~v-~~~~~~~e~v~v~D~~~ 36 (255)
T COG1712 2 KVGIVGCGAIGKFLLELV-RDGRVDFELVAVYDRDE 36 (255)
T ss_pred eEEEEeccHHHHHHHHHH-hcCCcceeEEEEecCCH
Confidence 689999999999998754 544 44455555433
No 268
>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....
Probab=85.04 E-value=4.1 Score=30.68 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhc
Q 012768 396 DISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAAFIGGVASQEVIKVVF 454 (456)
Q Consensus 396 D~~~l~~~~~~i~~~~~~~~~~i~e~~v~e~~r~~~~~l~~vaa~~GGiaaQEvIK~i~ 454 (456)
..+-+...++--...++++ ..+...+++++..---.+.|..|++.|++..|++|++.
T Consensus 9 h~~fI~a~anLrA~~f~I~--~~~~~~~~~i~~~iIP~~~~t~~iva~~~~~e~~k~~~ 65 (67)
T PF02134_consen 9 HLDFIYAAANLRAQNFGIP--PLDREEIKKIAGNIIPAFAPTNAIVAGIAVNELYKLLQ 65 (67)
T ss_dssp HHHHHHHHHHHHHHHTT-----S-HHHHHHHHTTEE-B-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCC--cccHHHHHHHhcCcCCCcCCchhHHHHHHHHHHHHHHh
Confidence 3444444444444555554 24556666666222335778888999999999999874
No 269
>PRK07063 short chain dehydrogenase; Provisional
Probab=84.82 E-value=3 Score=39.68 Aligned_cols=34 Identities=12% Similarity=0.206 Sum_probs=28.9
Q ss_pred HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768 16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD 50 (456)
+|.+++|+|.| .||+|.++++.|+..|.. +.++|
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~-vv~~~ 38 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGAA-VALAD 38 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEe
Confidence 46788999998 578999999999999974 77765
No 270
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=84.76 E-value=1.4 Score=43.21 Aligned_cols=32 Identities=25% Similarity=0.263 Sum_probs=28.0
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
+|.|||+|.+|+.++.+|...|. .++++|.+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence 58999999999999999999996 688887543
No 271
>PRK07062 short chain dehydrogenase; Provisional
Probab=84.76 E-value=3.7 Score=39.14 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=28.4
Q ss_pred HhcCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 17 LEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 17 L~~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
|+++.++|.|+ ||+|.++++.|+..|.. +.+++.
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~~-V~~~~r 40 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGAS-VAICGR 40 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeC
Confidence 56788999985 78999999999999985 777653
No 272
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=84.73 E-value=1.2 Score=45.53 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=31.5
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
+...+|+|+|+|.+|..+++.|...|+ +++++|.+
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~ 199 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN 199 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence 567889999999999999999999999 59999853
No 273
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.72 E-value=1.3 Score=43.48 Aligned_cols=33 Identities=15% Similarity=0.313 Sum_probs=29.1
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
++|.|||+|.+|..+|.+|+..|. .++++|.+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCH
Confidence 479999999999999999999996 589998553
No 274
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=84.60 E-value=0.94 Score=44.44 Aligned_cols=112 Identities=16% Similarity=0.165 Sum_probs=61.0
Q ss_pred EEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecCh--hhh
Q 012768 24 LLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP--EAL 101 (456)
Q Consensus 24 IiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~--~~~ 101 (456)
+||+|..|..++++|...|. +++++|.+.-....+.. .|...+....+.++ +.++-+..+.... ..+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~--------~g~~~~~s~~~~~~--~advVil~vp~~~~~~~v 69 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGH-PVRVFDLFPDAVEEAVA--------AGAQAAASPAEAAE--GADRVITMLPAGQHVISV 69 (288)
T ss_pred CCcccHhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHH--------cCCeecCCHHHHHh--cCCEEEEeCCChHHHHHH
Confidence 58999999999999999996 68888865322211111 12211212222222 2344444433211 111
Q ss_pred h---cCCcCCCCCCcEEEEc-CCChHHHHHHHHHHHHcCCeEEEEeecc
Q 012768 102 I---EMNPPFFSQFTLVVAT-QLGEEKMIKLDRICREANVMLIFARSYG 146 (456)
Q Consensus 102 ~---~~~~~~~~~~dvVi~~-~~~~~~~~~l~~~~~~~~ip~i~~~~~G 146 (456)
. ..-...+..-.+||.+ +.+......+.+.+.+.++.++.+-..|
T Consensus 70 ~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~G 118 (288)
T TIGR01692 70 YSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSG 118 (288)
T ss_pred HcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCC
Confidence 1 0011223333466644 4455566778888888888888875544
No 275
>PRK06223 malate dehydrogenase; Reviewed
Probab=84.55 E-value=1.3 Score=43.84 Aligned_cols=32 Identities=19% Similarity=0.418 Sum_probs=29.5
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
.+|.|+|+|.+|+-+|..++..|.+.+.++|.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence 48999999999999999999998769999985
No 276
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=84.53 E-value=3.5 Score=39.12 Aligned_cols=129 Identities=16% Similarity=0.270 Sum_probs=78.9
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChh-
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPE- 99 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~- 99 (456)
++-+||+|-.|..++++|...|.. ++.+|-+.-....+.. -|..-+..+.+.+.+|.+- ++.++-....
T Consensus 2 ~iGmiGLGrMG~n~v~rl~~~ghd-vV~yD~n~~av~~~~~--------~ga~~a~sl~el~~~L~~p-r~vWlMvPag~ 71 (300)
T COG1023 2 QIGMIGLGRMGANLVRRLLDGGHD-VVGYDVNQTAVEELKD--------EGATGAASLDELVAKLSAP-RIVWLMVPAGD 71 (300)
T ss_pred cceeeccchhhHHHHHHHHhCCCe-EEEEcCCHHHHHHHHh--------cCCccccCHHHHHHhcCCC-cEEEEEccCCC
Confidence 567899999999999999999975 6666754433332222 2333344455666666543 3333221111
Q ss_pred ---hhhcCCcCCCCCCcEEEEcC-CChHHHHHHHHHHHHcCCeEEEEeeccc-----eeeEEeeeCCce
Q 012768 100 ---ALIEMNPPFFSQFTLVVATQ-LGEEKMIKLDRICREANVMLIFARSYGL-----TGFVRISVKEHT 159 (456)
Q Consensus 100 ---~~~~~~~~~~~~~dvVi~~~-~~~~~~~~l~~~~~~~~ip~i~~~~~G~-----~G~v~~~~~~~~ 159 (456)
.+.++-...++.=|+||... .+.+...+-.+.....++-|+.+++.|- .|+.+..-+.+.
T Consensus 72 it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~~lMiGG~~~ 140 (300)
T COG1023 72 ITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGYCLMIGGDEE 140 (300)
T ss_pred chHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCceEEecCcHH
Confidence 12222245677889999764 4455555556677889999999988764 345555444433
No 277
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=84.45 E-value=1.2 Score=46.24 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=32.1
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
+...+|+|+|+|.+|..+|+.|...|+ +++++|.+.
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp 245 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDP 245 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCc
Confidence 578899999999999999999999999 699988544
No 278
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.45 E-value=1.3 Score=43.50 Aligned_cols=33 Identities=15% Similarity=0.335 Sum_probs=29.4
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
.+|.|||+|..|+-+|.+++++|. .++++|.+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCH
Confidence 489999999999999999999997 599998543
No 279
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=84.44 E-value=1.3 Score=44.08 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=29.4
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
+.+|+|+|+|++|+-+|..|..+| ..++++..+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAG-FDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCC
Confidence 458999999999999999999999 5688887543
No 280
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=84.40 E-value=7.1 Score=39.23 Aligned_cols=89 Identities=15% Similarity=0.110 Sum_probs=54.9
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecCh
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP 98 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~ 98 (456)
..+|+|+|+||+|.-.++....+| -+++.+| .+..|.+.+ ++|--+.-+...+.+
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~-------------------~~~~K~e~a----~~lGAd~~i~~~~~~- 221 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMG-AEVIAIT-------------------RSEEKLELA----KKLGADHVINSSDSD- 221 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC-CeEEEEe-------------------CChHHHHHH----HHhCCcEEEEcCCch-
Confidence 578999999999999999999899 7888887 334455433 344434433322111
Q ss_pred hhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCe
Q 012768 99 EALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVM 138 (456)
Q Consensus 99 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip 138 (456)
.. + ..-..+|+|+.|.. .......-+.++..+.-
T Consensus 222 -~~-~---~~~~~~d~ii~tv~-~~~~~~~l~~l~~~G~~ 255 (339)
T COG1064 222 -AL-E---AVKEIADAIIDTVG-PATLEPSLKALRRGGTL 255 (339)
T ss_pred -hh-H---HhHhhCcEEEECCC-hhhHHHHHHHHhcCCEE
Confidence 11 1 11112999998887 45554555555555543
No 281
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=84.39 E-value=3.7 Score=39.64 Aligned_cols=104 Identities=11% Similarity=0.082 Sum_probs=55.8
Q ss_pred cEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChh
Q 012768 21 SVCLLN-CGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPE 99 (456)
Q Consensus 21 ~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~ 99 (456)
+|+|+| .|.+|+.+++.|...|- ++++++.. ..|+. ..+.+.+.+...+|++-++......
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~-~v~~~~r~--------------~~d~~--~~~~~~~~~~~~~~d~vi~~a~~~~- 62 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR-VVVALTSS--------------QLDLT--DPEALERLLRAIRPDAVVNTAAYTD- 62 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC-EEEEeCCc--------------ccCCC--CHHHHHHHHHhCCCCEEEECCcccc-
Confidence 589999 58899999999999985 57777643 11221 2344555566555555443221100
Q ss_pred hhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeecccee
Q 012768 100 ALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTG 149 (456)
Q Consensus 100 ~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G 149 (456)
... .....+... ..+......+.+.|++.+..+|..++...||
T Consensus 63 ----~~~-~~~~~~~~~--~~n~~~~~~l~~~~~~~~~~~v~~Ss~~vy~ 105 (287)
T TIGR01214 63 ----VDG-AESDPEKAF--AVNALAPQNLARAAARHGARLVHISTDYVFD 105 (287)
T ss_pred ----ccc-cccCHHHHH--HHHHHHHHHHHHHHHHcCCeEEEEeeeeeec
Confidence 000 000000000 0112224455667777777888887755444
No 282
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=84.32 E-value=1.3 Score=44.93 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=29.7
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV 54 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v 54 (456)
.|+|||.|-+|+.+|..|++.|. +++|+|....
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~-~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGK-KTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence 58999999999999999999996 6999998544
No 283
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=84.13 E-value=1.3 Score=45.91 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=28.9
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
..+|+|||.|-+|+++|-.|++.|+. ++|+|.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~-V~LiE~ 33 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVP-VELYEM 33 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCc-EEEEEc
Confidence 35899999999999999999999975 899984
No 284
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=84.13 E-value=1.3 Score=45.80 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=31.1
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
+...+|+|+|+|.+|..+++.+...|. +++++|.+
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d 234 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVD 234 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 467899999999999999999999999 68888744
No 285
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=84.07 E-value=1.2 Score=44.15 Aligned_cols=34 Identities=26% Similarity=0.470 Sum_probs=28.2
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV 54 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v 54 (456)
..|+|||+|..|+.+|..|.+.|+. ++|+|....
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~-v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGID-VTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCE-EEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccc-cccchhccc
Confidence 4799999999999999999999987 889886543
No 286
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.96 E-value=1.4 Score=43.12 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=28.7
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
.+|.|+|+|..|+.+|..|+..|. .++++|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence 579999999999999999999997 59999844
No 287
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=83.94 E-value=1.4 Score=43.28 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=28.6
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
++|.|||+|-+|+.+|.+|+.+|. .++++|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence 579999999999999999999995 68888854
No 288
>PRK06184 hypothetical protein; Provisional
Probab=83.92 E-value=1.3 Score=47.12 Aligned_cols=34 Identities=24% Similarity=0.454 Sum_probs=30.6
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
+...|+|||+|..|..+|-.|.+.|+. ++|+|..
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~-v~viE~~ 35 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVS-FRLIEKA 35 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEeCC
Confidence 457899999999999999999999995 9999864
No 289
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=83.72 E-value=3.1 Score=43.68 Aligned_cols=34 Identities=15% Similarity=0.120 Sum_probs=28.9
Q ss_pred hcCcEEEEcCChhHHH-HHHHHHHcCCCcEEEEeCC
Q 012768 18 EKASVCLLNCGPTGSE-TLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 18 ~~~~VlIiG~gglG~e-iaknLvl~Gv~~itlvD~d 52 (456)
+..+|+|+|+|+.|.. +|+.|...|.. +++.|..
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~-V~~~D~~ 40 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYK-VSGSDLK 40 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCe-EEEECCC
Confidence 4568999999999999 79999999986 7777743
No 290
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=83.58 E-value=6.5 Score=39.46 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=28.6
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
...+|+|+|+|++|..++..+-..|+ +++.++.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~ 204 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNR 204 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEec
Confidence 56899999999999999999889999 5777764
No 291
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=83.46 E-value=11 Score=30.99 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=21.2
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD 50 (456)
..+|+-+|||. |.-....+-..+-++++-+|
T Consensus 20 ~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD 50 (124)
T TIGR02469 20 GDVLWDIGAGS-GSITIEAARLVPNGRVYAIE 50 (124)
T ss_pred CCEEEEeCCCC-CHHHHHHHHHCCCceEEEEc
Confidence 56899999965 55544444444447888888
No 292
>PRK09126 hypothetical protein; Provisional
Probab=83.40 E-value=1.4 Score=44.99 Aligned_cols=36 Identities=19% Similarity=0.468 Sum_probs=31.4
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 012768 18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV 54 (456)
Q Consensus 18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v 54 (456)
.+..|+|||+|..|+.+|..|.+.|+. ++|+|....
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~-v~v~E~~~~ 37 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLK-VTLIERQPL 37 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCc-EEEEeCCCc
Confidence 357899999999999999999999985 899986553
No 293
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=83.33 E-value=3.2 Score=40.32 Aligned_cols=31 Identities=19% Similarity=0.395 Sum_probs=25.8
Q ss_pred CcEEEEc-CChhHHHHHHHHHH-cCCCcEEEEe
Q 012768 20 ASVCLLN-CGPTGSETLKNLVL-GGIGSITVID 50 (456)
Q Consensus 20 ~~VlIiG-~gglG~eiaknLvl-~Gv~~itlvD 50 (456)
-+|.|+| +|..|..+++.+.. .++.=+-++|
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d 34 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFE 34 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence 3799999 59999999999985 6777667777
No 294
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=83.31 E-value=2 Score=43.38 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=30.6
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCccc
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVE 55 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~ 55 (456)
.|+|||.|-+|+.+|..|+..|. +++|+|.+.+.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~-~V~vle~~~~~ 35 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGL-SVTVIERSSRA 35 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCC
Confidence 69999999999999999999996 59999987654
No 295
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=83.31 E-value=1.6 Score=43.37 Aligned_cols=32 Identities=16% Similarity=0.305 Sum_probs=29.7
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
.+|.|||+|-+|+-+|-.|+..|.+.++++|.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 48999999999999999999999878999995
No 296
>PRK00536 speE spermidine synthase; Provisional
Probab=83.29 E-value=4.5 Score=39.20 Aligned_cols=30 Identities=7% Similarity=0.078 Sum_probs=23.4
Q ss_pred cCcEEEEcC--ChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 19 KASVCLLNC--GPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 19 ~~~VlIiG~--gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
-++|||+|. ||+.-|++|.= .++++||-|.
T Consensus 73 pk~VLIiGGGDGg~~REvLkh~-----~~v~mVeID~ 104 (262)
T PRK00536 73 LKEVLIVDGFDLELAHQLFKYD-----THVDFVQADE 104 (262)
T ss_pred CCeEEEEcCCchHHHHHHHCcC-----CeeEEEECCH
Confidence 479999985 67778888882 3999998654
No 297
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=83.26 E-value=9.7 Score=36.90 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.9
Q ss_pred CcEEEEcCChhHHHHHHHHHHc
Q 012768 20 ASVCLLNCGPTGSETLKNLVLG 41 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~ 41 (456)
.||.|+|||.+|..+++.|...
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~ 23 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHD 23 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhC
Confidence 3799999999999999999875
No 298
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=83.13 E-value=1.2 Score=44.32 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=27.9
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD 50 (456)
|++++|.|||+|..|..++++|..+|+. +++.+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~-Viv~~ 33 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLN-VIVGL 33 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCe-EEEEE
Confidence 4678999999999999999999999984 44433
No 299
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=83.04 E-value=1.5 Score=45.01 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=31.5
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
.|..++|.|||+|.+|..+++.|...|+. +..+|+
T Consensus 113 ~l~gktvGIIG~G~IG~~va~~l~a~G~~-V~~~Dp 147 (381)
T PRK00257 113 DLAERTYGVVGAGHVGGRLVRVLRGLGWK-VLVCDP 147 (381)
T ss_pred CcCcCEEEEECCCHHHHHHHHHHHHCCCE-EEEECC
Confidence 58899999999999999999999999994 677775
No 300
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.03 E-value=1.4 Score=41.45 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=29.3
Q ss_pred HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
+++++|+|.| .|++|.++++.|+..|.. +++++.
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r 37 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDR 37 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeC
Confidence 5678999999 588999999999999986 888763
No 301
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=83.02 E-value=4.4 Score=32.76 Aligned_cols=73 Identities=15% Similarity=0.210 Sum_probs=45.1
Q ss_pred chHHHHHHHHHHhCCCCEEEEEecChhhhhcC---CcCCCCCCcEEEEcCC--ChHHHHHHHHHHHHcCCeEEEEeeccc
Q 012768 73 SKAKSVCAFLQELNDAVKAKFIEEYPEALIEM---NPPFFSQFTLVVATQL--GEEKMIKLDRICREANVMLIFARSYGL 147 (456)
Q Consensus 73 ~Ka~~~~~~l~~lnp~v~v~~~~~~~~~~~~~---~~~~~~~~dvVi~~~~--~~~~~~~l~~~~~~~~ip~i~~~~~G~ 147 (456)
.+....++.+++.+- +...+ ......... -+..+.+.|+||+.++ +-.....+-+.|.++++|++.+.+.|.
T Consensus 10 ~~~~~~~~~~~~~G~--~~~~h-g~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~ 86 (97)
T PF10087_consen 10 DRERRYKRILEKYGG--KLIHH-GRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGV 86 (97)
T ss_pred ccHHHHHHHHHHcCC--EEEEE-ecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCH
Confidence 455566677777554 33333 111111111 1345678899986543 445678889999999999999987665
Q ss_pred e
Q 012768 148 T 148 (456)
Q Consensus 148 ~ 148 (456)
.
T Consensus 87 ~ 87 (97)
T PF10087_consen 87 S 87 (97)
T ss_pred H
Confidence 3
No 302
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=82.93 E-value=6.4 Score=37.96 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=32.2
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
.|+.++|.|.|.|.+|+.+|+.|...|.+=+.+-|.
T Consensus 35 ~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~ 70 (254)
T cd05313 35 TLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDS 70 (254)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 477899999999999999999999999877778874
No 303
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=82.92 E-value=1.6 Score=43.34 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=28.9
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
+|.|+|+|..|+.+|.+|+..|. +++++|.+.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGH-EVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCC-eeEEEeCCH
Confidence 69999999999999999999997 699998653
No 304
>PRK05866 short chain dehydrogenase; Provisional
Probab=82.86 E-value=3.6 Score=40.29 Aligned_cols=34 Identities=12% Similarity=0.249 Sum_probs=28.4
Q ss_pred HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768 16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD 50 (456)
.+.+.+|+|.| .||+|.++++.|+..|. ++.+++
T Consensus 37 ~~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~ 71 (293)
T PRK05866 37 DLTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVA 71 (293)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEE
Confidence 45678899998 58999999999999996 577765
No 305
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=82.84 E-value=1.5 Score=46.34 Aligned_cols=33 Identities=15% Similarity=0.364 Sum_probs=30.1
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD 50 (456)
+++++|+|+|+||+|..+++.|+..|+ +++++|
T Consensus 330 ~~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~ 362 (477)
T PRK09310 330 LNNQHVAIVGAGGAAKAIATTLARAGA-ELLIFN 362 (477)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEe
Confidence 567899999999999999999999998 888876
No 306
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=82.84 E-value=1.5 Score=44.80 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=31.4
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
.|..++|.|||+|.+|+.+|+.|...|+. +..+|+
T Consensus 113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~~-V~~~dp 147 (378)
T PRK15438 113 SLHDRTVGIVGVGNVGRRLQARLEALGIK-TLLCDP 147 (378)
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECC
Confidence 58899999999999999999999999985 667775
No 307
>PRK08264 short chain dehydrogenase; Validated
Probab=82.80 E-value=1.8 Score=40.58 Aligned_cols=35 Identities=11% Similarity=0.158 Sum_probs=30.5
Q ss_pred HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
+.+++|+|.| .|++|.++++.|+..|..++++++.
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r 39 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAAR 39 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEec
Confidence 5678899998 5899999999999999977888864
No 308
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=82.71 E-value=1.6 Score=39.89 Aligned_cols=30 Identities=23% Similarity=0.567 Sum_probs=23.2
Q ss_pred EEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 23 CLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 23 lIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
+|||+|..|-.+|..|...|+..++|+|..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~ 30 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERN 30 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESS
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCC
Confidence 699999999999999999999889999954
No 309
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=82.65 E-value=5.3 Score=45.94 Aligned_cols=34 Identities=24% Similarity=0.441 Sum_probs=30.9
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
..++|+|||+|+.|...|..|++.|. ++|++|..
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~-~VtVfE~~ 338 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGF-PVTVFEAF 338 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEeeC
Confidence 47899999999999999999999998 59999854
No 310
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=82.63 E-value=4.3 Score=40.79 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=29.9
Q ss_pred HHhcCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 16 ALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 16 ~L~~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
+++.++|+|.|+ |=+|+.+++.|...|. +++.+|..
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~ 48 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNF 48 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 566789999994 7799999999999985 67788743
No 311
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=82.61 E-value=10 Score=36.63 Aligned_cols=33 Identities=21% Similarity=0.188 Sum_probs=23.1
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeC
Q 012768 18 EKASVCLLNCGPTGSETLKNLVLGGI-GSITVIDG 51 (456)
Q Consensus 18 ~~~~VlIiG~gglG~eiaknLvl~Gv-~~itlvD~ 51 (456)
...+|+.+|||+ |..+.....+.|. ++++.+|.
T Consensus 77 ~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~ 110 (272)
T PRK11873 77 PGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDM 110 (272)
T ss_pred CCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECC
Confidence 467999999988 7655544444565 36888873
No 312
>PRK06185 hypothetical protein; Provisional
Probab=82.59 E-value=1.3 Score=45.53 Aligned_cols=35 Identities=26% Similarity=0.495 Sum_probs=31.3
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
.+..|+|||.|.+|..+|..|++.|+ +++|+|...
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~-~v~liE~~~ 39 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGV-DVTVLEKHA 39 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence 45789999999999999999999998 599999763
No 313
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=82.58 E-value=4.4 Score=41.23 Aligned_cols=126 Identities=14% Similarity=0.180 Sum_probs=72.7
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec-
Q 012768 18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE- 96 (456)
Q Consensus 18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~- 96 (456)
.++.|-|||++-.|+.+|.|++.-|.. +.+++.+.-....+-.+.--..+-+|..-.+.....|+. |..-+--+..
T Consensus 2 ~~~~iGviGLaVMG~NLaLNi~~~G~~-VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~--PRkI~lMVkAG 78 (473)
T COG0362 2 MKADIGVIGLAVMGSNLALNIADHGYT-VAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEK--PRKILLMVKAG 78 (473)
T ss_pred CccceeeEehhhhhHHHHHHHHhcCce-EEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcC--CceEEEEEecC
Confidence 357899999999999999999999986 777765443222211111001112333344444444433 4322222221
Q ss_pred Ch-hhhhcCCcCCCCCCcEEEEcC-CChHHHHHHHHHHHHcCCeEEEEeecc
Q 012768 97 YP-EALIEMNPPFFSQFTLVVATQ-LGEEKMIKLDRICREANVMLIFARSYG 146 (456)
Q Consensus 97 ~~-~~~~~~~~~~~~~~dvVi~~~-~~~~~~~~l~~~~~~~~ip~i~~~~~G 146 (456)
.| +...+.-..++.+=|+||+.. .......+-++...+.++-||-+++.|
T Consensus 79 ~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSG 130 (473)
T COG0362 79 TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSG 130 (473)
T ss_pred CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccc
Confidence 11 222222345678889999764 334444455667788899999887765
No 314
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=82.57 E-value=1.5 Score=44.83 Aligned_cols=35 Identities=14% Similarity=0.416 Sum_probs=31.3
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
....|+|||+|..|..+|-.|++.|+. ++|+|...
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~-v~liE~~~ 39 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLS-VALVEGRE 39 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCE-EEEEeCCC
Confidence 346899999999999999999999996 99999764
No 315
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=82.52 E-value=1.7 Score=41.30 Aligned_cols=116 Identities=18% Similarity=0.214 Sum_probs=64.0
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE 96 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~ 96 (456)
|...+||=|||||- -++.-|++.| .++|-+|. ++.-.+.++.+-.+ ..+.++....
T Consensus 58 l~g~~vLDvGCGgG--~Lse~mAr~G-a~VtgiD~-------------------se~~I~~Ak~ha~e--~gv~i~y~~~ 113 (243)
T COG2227 58 LPGLRVLDVGCGGG--ILSEPLARLG-ASVTGIDA-------------------SEKPIEVAKLHALE--SGVNIDYRQA 113 (243)
T ss_pred CCCCeEEEecCCcc--HhhHHHHHCC-CeeEEecC-------------------ChHHHHHHHHhhhh--ccccccchhh
Confidence 78899999999853 7889999999 77888872 22222233222222 2334433333
Q ss_pred ChhhhhcCCcCCCCCCcEEEEcC------CChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCCcee
Q 012768 97 YPEALIEMNPPFFSQFTLVVATQ------LGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTV 160 (456)
Q Consensus 97 ~~~~~~~~~~~~~~~~dvVi~~~------~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~~~ 160 (456)
..+++.... .+||+|+|.. ++........++++-.|+-|+..-..-+..+....++.+++
T Consensus 114 ~~edl~~~~----~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~v 179 (243)
T COG2227 114 TVEDLASAG----GQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYV 179 (243)
T ss_pred hHHHHHhcC----CCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHH
Confidence 333332211 5899999752 22223444455555555555555444444444444444444
No 316
>PRK08251 short chain dehydrogenase; Provisional
Probab=82.46 E-value=5.1 Score=37.65 Aligned_cols=32 Identities=6% Similarity=0.207 Sum_probs=26.9
Q ss_pred cCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 19 KASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 19 ~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
+++|+|.| .|++|..+++.|+..|. ++++++.
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r 34 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCAR 34 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeC
Confidence 46789998 78999999999999995 6777764
No 317
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=82.25 E-value=6.1 Score=39.54 Aligned_cols=74 Identities=12% Similarity=0.117 Sum_probs=48.9
Q ss_pred cCcEEEEcCChhHHHHHHHHHH-cCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecC
Q 012768 19 KASVCLLNCGPTGSETLKNLVL-GGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY 97 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl-~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~ 97 (456)
..++.|||+|..|...++.|.. ..+.++.++| ....|++..++.+++.. +++.... +
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~-------------------r~~~~~~~~~~~~~~~g--~~v~~~~-~ 185 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYC-------------------RTPSTREKFALRASDYE--VPVRAAT-D 185 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEC-------------------CCHHHHHHHHHHHHhhC--CcEEEeC-C
Confidence 4789999999999987777643 4567777776 23457777777776543 3333332 2
Q ss_pred hhhhhcCCcCCCCCCcEEEEcCCC
Q 012768 98 PEALIEMNPPFFSQFTLVVATQLG 121 (456)
Q Consensus 98 ~~~~~~~~~~~~~~~dvVi~~~~~ 121 (456)
+ .+.+++.|+|+.|+.+
T Consensus 186 ~-------~eav~~aDiVitaT~s 202 (325)
T TIGR02371 186 P-------REAVEGCDILVTTTPS 202 (325)
T ss_pred H-------HHHhccCCEEEEecCC
Confidence 2 2335689999977644
No 318
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=82.21 E-value=1.6 Score=44.95 Aligned_cols=31 Identities=23% Similarity=0.487 Sum_probs=28.4
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
+|+|||+|+.|+.+|..|++.|+. ++++|..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~-V~llE~~ 32 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQ-TFLLERK 32 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCc-EEEEecC
Confidence 699999999999999999999985 8899864
No 319
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=82.03 E-value=5.4 Score=41.45 Aligned_cols=31 Identities=29% Similarity=0.370 Sum_probs=27.2
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
+|+|+|+|+.|..+|+.|...|. .++..|..
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~-~V~~sD~~ 31 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGA-EVTVTDLK 31 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCC-EEEEEeCC
Confidence 58999999999999999999998 58887743
No 320
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=82.03 E-value=8.6 Score=30.91 Aligned_cols=33 Identities=30% Similarity=0.575 Sum_probs=26.3
Q ss_pred hcCcEEEEcCChhHHHHHHH-HHHcCCCcEEEEe
Q 012768 18 EKASVCLLNCGPTGSETLKN-LVLGGIGSITVID 50 (456)
Q Consensus 18 ~~~~VlIiG~gglG~eiakn-Lvl~Gv~~itlvD 50 (456)
++.+|+|+|+|++|..++.+ ....|.+-..++|
T Consensus 2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~d 35 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFD 35 (96)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEEE
T ss_pred CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEE
Confidence 35789999999999988743 3467888788888
No 321
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.01 E-value=4.7 Score=39.45 Aligned_cols=40 Identities=18% Similarity=0.121 Sum_probs=33.9
Q ss_pred CHHHHHHHhcCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEE
Q 012768 10 GEQGQAALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVI 49 (456)
Q Consensus 10 G~~~q~~L~~~~VlIiG~-gglG~eiaknLvl~Gv~~itlv 49 (456)
+...++++.++.|+|-|+ .|+|-++|+.|+..|.+-+.++
T Consensus 3 ~~~~~e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lva 43 (282)
T KOG1205|consen 3 GNLFMERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVA 43 (282)
T ss_pred ccccHHHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEee
Confidence 445678999999999995 7899999999999999866554
No 322
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=81.98 E-value=1.4 Score=46.42 Aligned_cols=37 Identities=16% Similarity=0.364 Sum_probs=32.0
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 15 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
......+|+|||+|..|...|+.|.+.|. ++++++..
T Consensus 6 ~~~~~~~VaIIGAG~aGL~aA~~l~~~G~-~v~vfE~~ 42 (461)
T PLN02172 6 NPINSQHVAVIGAGAAGLVAARELRREGH-TVVVFERE 42 (461)
T ss_pred cCCCCCCEEEECCcHHHHHHHHHHHhcCC-eEEEEecC
Confidence 34567899999999999999999999997 68888753
No 323
>PRK06139 short chain dehydrogenase; Provisional
Probab=81.93 E-value=3.1 Score=41.72 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=29.4
Q ss_pred HHhcCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 16 ALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 16 ~L~~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
.+.+++|+|.|+ ||+|.++++.|+..|.. +.+++.
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~~-Vvl~~R 39 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGAR-LVLAAR 39 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence 467789999995 89999999999999974 777763
No 324
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=81.90 E-value=1.6 Score=44.43 Aligned_cols=34 Identities=18% Similarity=0.406 Sum_probs=30.4
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
...|+|||+|..|+.+|..|.+.|+ +++|+|...
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~-~v~liE~~~ 40 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGA-SVALVAPEP 40 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCC-eEEEEeCCC
Confidence 4579999999999999999999997 599999764
No 325
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=81.89 E-value=1.8 Score=43.99 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=31.0
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV 54 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v 54 (456)
...|+|||.|..|..+|..|.+.|+ +++++|.+..
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~-~v~v~E~~~~ 39 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGL-RVALLAPRAP 39 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCC-eEEEEecCCC
Confidence 3579999999999999999999998 6999997654
No 326
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=81.83 E-value=1 Score=41.70 Aligned_cols=21 Identities=43% Similarity=0.695 Sum_probs=20.3
Q ss_pred chhHHHHHHHHHHHHHHHHhc
Q 012768 434 LHAVAAFIGGVASQEVIKVVF 454 (456)
Q Consensus 434 l~~vaa~~GGiaaQEvIK~i~ 454 (456)
+.|+++++|++.+||++|+++
T Consensus 155 ~~p~~~~~~~~~~~e~~k~~~ 175 (197)
T cd01492 155 LAPVAAVVGGILAQDVINALS 175 (197)
T ss_pred cccHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999986
No 327
>PRK07791 short chain dehydrogenase; Provisional
Probab=81.81 E-value=3.4 Score=40.31 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=28.4
Q ss_pred HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768 16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD 50 (456)
.++++.++|.| .+|+|.++++.|+..|.. +.++|
T Consensus 3 ~l~~k~~lITGas~GIG~aia~~la~~G~~-vii~~ 37 (286)
T PRK07791 3 LLDGRVVIVTGAGGGIGRAHALAFAAEGAR-VVVND 37 (286)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEee
Confidence 46778899998 689999999999999974 66665
No 328
>PRK07236 hypothetical protein; Provisional
Probab=81.78 E-value=1.8 Score=44.18 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=31.8
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
++..+|+|||+|..|..+|..|.+.|+. ++|+|...
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~-v~v~E~~~ 39 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWD-VDVFERSP 39 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCC-EEEEecCC
Confidence 4568899999999999999999999985 89998653
No 329
>PRK07576 short chain dehydrogenase; Provisional
Probab=81.77 E-value=1.4 Score=42.24 Aligned_cols=38 Identities=8% Similarity=0.100 Sum_probs=31.7
Q ss_pred HHHHHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 13 GQAALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 13 ~q~~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
++.++.+.+|+|.| .|++|.++++.|+..|.. +.++|.
T Consensus 3 ~~~~~~~k~ilItGasggIG~~la~~l~~~G~~-V~~~~r 41 (264)
T PRK07576 3 TMFDFAGKNVVVVGGTSGINLGIAQAFARAGAN-VAVASR 41 (264)
T ss_pred ccccCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence 45568889999998 489999999999999975 777764
No 330
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=81.70 E-value=2.5 Score=43.86 Aligned_cols=37 Identities=32% Similarity=0.376 Sum_probs=30.6
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
+....+|+|||.|-.|..+|+.|...++ .|||||+..
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~~~~~-~ItlI~~~~ 43 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLDPKKY-NITVISPRN 43 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhCcCCC-eEEEEcCCC
Confidence 5677899999999999999999965554 599998654
No 331
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=81.69 E-value=6.4 Score=36.73 Aligned_cols=34 Identities=21% Similarity=0.226 Sum_probs=26.3
Q ss_pred cCcEEEEcCChhHHHHHHHHH--HcCCCcEEEEeCC
Q 012768 19 KASVCLLNCGPTGSETLKNLV--LGGIGSITVIDGS 52 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLv--l~Gv~~itlvD~d 52 (456)
..+|+|+|+|.+|..+++.+. ..|+.-+-++|.+
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d 119 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVD 119 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECC
Confidence 458999999999999998643 4566666677754
No 332
>PTZ00188 adrenodoxin reductase; Provisional
Probab=81.61 E-value=3.4 Score=43.72 Aligned_cols=36 Identities=14% Similarity=0.273 Sum_probs=29.4
Q ss_pred hcCcEEEEcCChhHHHHHHHHH-HcCCCcEEEEeCCcc
Q 012768 18 EKASVCLLNCGPTGSETLKNLV-LGGIGSITVIDGSKV 54 (456)
Q Consensus 18 ~~~~VlIiG~gglG~eiaknLv-l~Gv~~itlvD~d~v 54 (456)
+..+|+|||.|+.|.++|..|. ..|+ +++|+|....
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~-~VtlfEk~p~ 74 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERV-KVDIFEKLPN 74 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCC-eEEEEecCCC
Confidence 4578999999999999999875 5676 4999986554
No 333
>PRK06270 homoserine dehydrogenase; Provisional
Probab=81.55 E-value=7.1 Score=39.36 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=19.8
Q ss_pred CcEEEEcCChhHHHHHHHHHHc
Q 012768 20 ASVCLLNCGPTGSETLKNLVLG 41 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~ 41 (456)
-+|.|+|+|.+|..+++.|...
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHh
Confidence 4899999999999999999754
No 334
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=81.53 E-value=3.1 Score=39.16 Aligned_cols=33 Identities=21% Similarity=0.378 Sum_probs=27.4
Q ss_pred HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768 17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD 50 (456)
|++++|+|.| .|++|..+++.|+..|. ++.++|
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~ 34 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFD 34 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEec
Confidence 4578899998 68899999999999987 466665
No 335
>PRK06523 short chain dehydrogenase; Provisional
Probab=81.44 E-value=4.6 Score=38.33 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=31.1
Q ss_pred HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
++++.+|+|.| .|++|.++++.|+..|.. +.+++.+.
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~r~~ 43 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGAR-VVTTARSR 43 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCCE-EEEEeCCh
Confidence 46788999998 589999999999999984 88887653
No 336
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=81.36 E-value=11 Score=37.39 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=28.4
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD 50 (456)
..+|+|.|+|++|..++.-+-..|.++++.+|
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~ 195 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARALGAEDVIGVD 195 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEC
Confidence 67999999999999999999899998777775
No 337
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=81.31 E-value=1.8 Score=44.40 Aligned_cols=36 Identities=11% Similarity=0.350 Sum_probs=32.0
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCc
Q 012768 18 EKASVCLLNCGPTGSETLKNLVLGGI-GSITVIDGSK 53 (456)
Q Consensus 18 ~~~~VlIiG~gglG~eiaknLvl~Gv-~~itlvD~d~ 53 (456)
++.+|+|||.|..|..+|..|.+.|. +.||++|.+.
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~ 38 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDER 38 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCC
Confidence 56789999999999999999999997 4799998764
No 338
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=81.28 E-value=1.8 Score=47.77 Aligned_cols=33 Identities=15% Similarity=0.299 Sum_probs=30.3
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
..|+|||.|-+|+.+|..|++.|. +++|+|.+.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~-~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGW-QVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 589999999999999999999998 599999874
No 339
>PRK12939 short chain dehydrogenase; Provisional
Probab=81.15 E-value=4 Score=38.31 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=27.4
Q ss_pred HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768 17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD 50 (456)
+++++|+|.| .|++|..+++.|+..|.. +.+++
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~-v~~~~ 38 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGAT-VAFND 38 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCCE-EEEEe
Confidence 5678999998 589999999999999974 55554
No 340
>PRK06398 aldose dehydrogenase; Validated
Probab=81.11 E-value=4.4 Score=38.69 Aligned_cols=36 Identities=14% Similarity=0.161 Sum_probs=30.1
Q ss_pred HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
.|+.++|+|.| .||+|.++++.|+..|. ++++++.+
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~ 39 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIK 39 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCC
Confidence 46778999998 57999999999999997 57777754
No 341
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=81.10 E-value=6.9 Score=39.50 Aligned_cols=29 Identities=28% Similarity=0.269 Sum_probs=22.1
Q ss_pred CcEEEEcC-ChhHHHHHHHHHHcCCCcEEE
Q 012768 20 ASVCLLNC-GPTGSETLKNLVLGGIGSITV 48 (456)
Q Consensus 20 ~~VlIiG~-gglG~eiaknLvl~Gv~~itl 48 (456)
.+|+|+|+ |.+|.++++.|....--+++.
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~ 32 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVA 32 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEE
Confidence 58999997 778999999998763334433
No 342
>PRK06194 hypothetical protein; Provisional
Probab=81.08 E-value=1.5 Score=42.42 Aligned_cols=35 Identities=9% Similarity=0.039 Sum_probs=29.1
Q ss_pred HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
.+++.+|+|.| .|++|.++++.|+..|. +++++|.
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r 38 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGM-KLVLADV 38 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeC
Confidence 35567899998 68999999999999997 5788763
No 343
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=81.08 E-value=2.4 Score=45.61 Aligned_cols=36 Identities=17% Similarity=0.437 Sum_probs=31.7
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCccc
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVE 55 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~ 55 (456)
...|+|||.|.+|+-+|..|++.|. +++|+|...+.
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~-~V~LlEk~d~~ 41 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGL-RCILVERHDIA 41 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCC-eEEEEECCCCC
Confidence 4679999999999999999999998 69999976543
No 344
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=80.96 E-value=2.6 Score=40.39 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=21.0
Q ss_pred hcCcEEEEcCChhHHHHHHHHH-HcCCCcEEEEeCCc
Q 012768 18 EKASVCLLNCGPTGSETLKNLV-LGGIGSITVIDGSK 53 (456)
Q Consensus 18 ~~~~VlIiG~gglG~eiaknLv-l~Gv~~itlvD~d~ 53 (456)
+..+|||+|.|+- +- ++.|. ..++.++++||-|.
T Consensus 76 ~p~~VLiiGgG~G-~~-~~ell~~~~~~~i~~VEiD~ 110 (246)
T PF01564_consen 76 NPKRVLIIGGGDG-GT-ARELLKHPPVESITVVEIDP 110 (246)
T ss_dssp ST-EEEEEESTTS-HH-HHHHTTSTT-SEEEEEES-H
T ss_pred CcCceEEEcCCCh-hh-hhhhhhcCCcceEEEEecCh
Confidence 5789999996553 32 34444 44589999998544
No 345
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=80.92 E-value=1.8 Score=44.47 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=29.9
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
..|+|||+|..|..+|-.|.+.|+ +++|+|...
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~-~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGL-EVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCC-EEEEEcCCC
Confidence 579999999999999999999997 589999765
No 346
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=80.91 E-value=13 Score=34.71 Aligned_cols=95 Identities=17% Similarity=0.213 Sum_probs=55.9
Q ss_pred EEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecC-hh
Q 012768 22 VCLLNC-GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY-PE 99 (456)
Q Consensus 22 VlIiG~-gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~-~~ 99 (456)
|+|+|+ |.+|..++..|...|.. ++.+= |. + .....+.|+.. .+++-..+.. ++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~-V~~l~----------R~----------~-~~~~~~~l~~~--g~~vv~~d~~~~~ 56 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFS-VRALV----------RD----------P-SSDRAQQLQAL--GAEVVEADYDDPE 56 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGC-EEEEE----------SS----------S-HHHHHHHHHHT--TTEEEES-TT-HH
T ss_pred CEEECCccHHHHHHHHHHHhCCCC-cEEEE----------ec----------c-chhhhhhhhcc--cceEeecccCCHH
Confidence 789995 88999999999997754 44431 11 0 11223444443 4554322221 11
Q ss_pred hhhcCCcCCCCCCcEEEEcCC---C--hHHHHHHHHHHHHcCCeEEEEee
Q 012768 100 ALIEMNPPFFSQFTLVVATQL---G--EEKMIKLDRICREANVMLIFARS 144 (456)
Q Consensus 100 ~~~~~~~~~~~~~dvVi~~~~---~--~~~~~~l~~~~~~~~ip~i~~~~ 144 (456)
.+ ...+++.|.|+++.. + ......+.+.|.+.+++.+.-.+
T Consensus 57 ~l----~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss 102 (233)
T PF05368_consen 57 SL----VAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSS 102 (233)
T ss_dssp HH----HHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESE
T ss_pred HH----HHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEE
Confidence 11 234789999987654 2 33466788899999988665433
No 347
>PLN02494 adenosylhomocysteinase
Probab=80.78 E-value=2.1 Score=44.85 Aligned_cols=36 Identities=11% Similarity=0.191 Sum_probs=31.9
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
+..++|+|+|+|.+|..+|+.+...|. +++++|.+.
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp 287 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDP 287 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 578899999999999999999999999 588887554
No 348
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=80.66 E-value=13 Score=37.16 Aligned_cols=98 Identities=15% Similarity=0.151 Sum_probs=60.3
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccc----cccccCcchHHHHHHHHHHhCCCCEEEEE
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML----DESCVGESKAKSVCAFLQELNDAVKAKFI 94 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~----~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~ 94 (456)
..+|.|+|+||+|-.+..-+..+|.++|.-+|-..- .-.+.+.|-. +..+.+ -+.+.+.+
T Consensus 186 G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~-Kl~~A~~fGAT~~vn~~~~~-----~vv~~i~~---------- 249 (366)
T COG1062 186 GDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPE-KLELAKKFGATHFVNPKEVD-----DVVEAIVE---------- 249 (366)
T ss_pred CCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHH-HHHHHHhcCCceeecchhhh-----hHHHHHHH----------
Confidence 568999999999999999999999999999984321 1112222111 111111 01111211
Q ss_pred ecChhhhhcCCcCCCC-CCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeecc
Q 012768 95 EEYPEALIEMNPPFFS-QFTLVVATQLGEEKMIKLDRICREANVMLIFARSYG 146 (456)
Q Consensus 95 ~~~~~~~~~~~~~~~~-~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G 146 (456)
... ..|.+|.|..+......--+.|++.+.- +..+..+
T Consensus 250 -------------~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~-v~iGv~~ 288 (366)
T COG1062 250 -------------LTDGGADYAFECVGNVEVMRQALEATHRGGTS-VIIGVAG 288 (366)
T ss_pred -------------hcCCCCCEEEEccCCHHHHHHHHHHHhcCCeE-EEEecCC
Confidence 122 6788898888877776667777776654 3343333
No 349
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.65 E-value=2.1 Score=41.97 Aligned_cols=34 Identities=12% Similarity=0.167 Sum_probs=31.3
Q ss_pred HHhcCcEEEEcCCh-hHHHHHHHHHHcCCCcEEEEe
Q 012768 16 ALEKASVCLLNCGP-TGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 16 ~L~~~~VlIiG~gg-lG~eiaknLvl~Gv~~itlvD 50 (456)
.++.++|+|+|.|+ +|..++..|...|. .+|+++
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~ 190 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICH 190 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEe
Confidence 36788999999999 99999999999999 899986
No 350
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=80.59 E-value=1.8 Score=44.44 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=29.9
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
...|+|||+|..|..+|-.|.+.|+. ++|+|..
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~-v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLR-IAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCE-EEEEcCC
Confidence 46899999999999999999999985 8999864
No 351
>PRK07478 short chain dehydrogenase; Provisional
Probab=80.48 E-value=4.6 Score=38.21 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=27.8
Q ss_pred HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768 17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD 50 (456)
+++++++|.| .||+|.++++.|+..|. ++.+++
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~ 37 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGA 37 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEe
Confidence 5677899998 57899999999999998 477765
No 352
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=80.43 E-value=2.2 Score=41.12 Aligned_cols=33 Identities=18% Similarity=0.458 Sum_probs=29.6
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV 54 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v 54 (456)
.|+|||+|..|..+|..|.+.|+ +++++|.+..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~-~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGL-RVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence 58999999999999999999999 5999987653
No 353
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=80.37 E-value=2.7 Score=31.58 Aligned_cols=28 Identities=21% Similarity=0.395 Sum_probs=24.8
Q ss_pred EEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 24 LLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 24 IiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
|||+|..|...|..|.+.|. +++|+|..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~-~v~v~E~~ 28 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGY-RVTVFEKN 28 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTS-EEEEEESS
T ss_pred CEeeCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 79999999999999999999 89999854
No 354
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=80.36 E-value=2.2 Score=44.77 Aligned_cols=37 Identities=16% Similarity=0.173 Sum_probs=32.6
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
.|..++|+|+|+|.+|..+|+.|...|. +++++|.+.
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp 287 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDP 287 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 4789999999999999999999999998 588886553
No 355
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=80.29 E-value=2 Score=43.87 Aligned_cols=34 Identities=26% Similarity=0.452 Sum_probs=30.2
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
...|+|||.|..|..+|-.|.+.|+ +++|+|...
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~-~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGR-SVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCC-cEEEEcCCC
Confidence 3589999999999999999999997 699999653
No 356
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=80.22 E-value=2.2 Score=43.78 Aligned_cols=32 Identities=31% Similarity=0.402 Sum_probs=29.4
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
+|+|||.|-+|+.+|..|+..|. +++|+|.+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~-~V~vle~~~ 33 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGH-EVTVIDRQP 33 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence 69999999999999999999996 699999874
No 357
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.21 E-value=2.3 Score=42.49 Aligned_cols=33 Identities=15% Similarity=0.271 Sum_probs=29.2
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
++|.|||+|.+|+.+|.+++.+|.. ++++|.+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~-V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLD-VVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCe-EEEEeCCH
Confidence 5799999999999999999999975 88998543
No 358
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=80.20 E-value=2.2 Score=44.32 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=28.0
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
.+|+|||+|-.|+|+|..|++.|+ +++|++.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~-~V~LiE~ 31 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGV-PVILYEM 31 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC-cEEEEec
Confidence 479999999999999999999997 5888874
No 359
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=80.14 E-value=2.4 Score=41.09 Aligned_cols=32 Identities=19% Similarity=0.397 Sum_probs=29.0
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
+|+|||+|..|.+.|..|.+.|.. ++|+|...
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~-v~lie~~~ 33 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLK-TLIIEGME 33 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCC-EEEEeccC
Confidence 699999999999999999999985 99999654
No 360
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=80.07 E-value=13 Score=30.15 Aligned_cols=77 Identities=19% Similarity=0.233 Sum_probs=44.4
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecCh
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP 98 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~ 98 (456)
+.+|+-+|||. |......+-+..-.+++-+|.+. .-.+.+.++..+....-+++.+..+.
T Consensus 2 ~~~vLDlGcG~-G~~~~~l~~~~~~~~v~gvD~s~-------------------~~~~~a~~~~~~~~~~~~i~~~~~d~ 61 (112)
T PF12847_consen 2 GGRVLDLGCGT-GRLSIALARLFPGARVVGVDISP-------------------EMLEIARERAAEEGLSDRITFVQGDA 61 (112)
T ss_dssp TCEEEEETTTT-SHHHHHHHHHHTTSEEEEEESSH-------------------HHHHHHHHHHHHTTTTTTEEEEESCC
T ss_pred CCEEEEEcCcC-CHHHHHHHhcCCCCEEEEEeCCH-------------------HHHHHHHHHHHhcCCCCCeEEEECcc
Confidence 57899999864 44433333344445599998432 13344556664444445555555443
Q ss_pred hhhhcCCcCCCCCCcEEEEcC
Q 012768 99 EALIEMNPPFFSQFTLVVATQ 119 (456)
Q Consensus 99 ~~~~~~~~~~~~~~dvVi~~~ 119 (456)
.. ..+...+||+|++..
T Consensus 62 -~~---~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 62 -EF---DPDFLEPFDLVICSG 78 (112)
T ss_dssp -HG---GTTTSSCEEEEEECS
T ss_pred -cc---CcccCCCCCEEEECC
Confidence 11 233455799999766
No 361
>CHL00194 ycf39 Ycf39; Provisional
Probab=80.07 E-value=8.5 Score=38.06 Aligned_cols=29 Identities=14% Similarity=0.355 Sum_probs=24.6
Q ss_pred cEEEEcC-ChhHHHHHHHHHHcCCCcEEEEe
Q 012768 21 SVCLLNC-GPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 21 ~VlIiG~-gglG~eiaknLvl~Gv~~itlvD 50 (456)
+|+|.|+ |-+|+.+++.|...|. +++.++
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~ 31 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLV 31 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC-eEEEEE
Confidence 6999995 7799999999999996 477665
No 362
>PRK08013 oxidoreductase; Provisional
Probab=80.06 E-value=2 Score=44.09 Aligned_cols=34 Identities=18% Similarity=0.255 Sum_probs=30.5
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
+..|+|||+|..|..+|-.|.+.|++ ++|+|...
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~-v~viE~~~ 36 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLR-VAVLEQRV 36 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCE-EEEEeCCC
Confidence 46899999999999999999999985 89999654
No 363
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=80.05 E-value=6 Score=39.43 Aligned_cols=34 Identities=18% Similarity=0.129 Sum_probs=27.9
Q ss_pred HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
+++.+|+|.| .|.+|+++++.|...|.. ++++|.
T Consensus 4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~~-V~~~~r 38 (340)
T PLN02653 4 PPRKVALITGITGQDGSYLTEFLLSKGYE-VHGIIR 38 (340)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCCE-EEEEec
Confidence 3567899999 588999999999999974 666664
No 364
>PRK06487 glycerate dehydrogenase; Provisional
Probab=79.99 E-value=2.1 Score=42.72 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=31.0
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 15 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
..|..++|.|+|+|.+|.++|+-|.-.|. ++..+|.
T Consensus 144 ~~l~gktvgIiG~G~IG~~vA~~l~~fgm-~V~~~~~ 179 (317)
T PRK06487 144 VELEGKTLGLLGHGELGGAVARLAEAFGM-RVLIGQL 179 (317)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECC
Confidence 36999999999999999999999998888 4666664
No 365
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=79.97 E-value=2.3 Score=42.48 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=27.9
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
.+|.|+|+|..|+.++.+|+..|. .++++|.+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGV-PVRLWARR 36 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 379999999999999999999995 48888753
No 366
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=79.91 E-value=2.2 Score=42.47 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=29.0
Q ss_pred cEEEEcC-ChhHHHHHHHHHHcCC-CcEEEEeCCc
Q 012768 21 SVCLLNC-GPTGSETLKNLVLGGI-GSITVIDGSK 53 (456)
Q Consensus 21 ~VlIiG~-gglG~eiaknLvl~Gv-~~itlvD~d~ 53 (456)
+|.|+|+ |.+|+.+|-.|+..|+ ..+.|+|-..
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~ 35 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG 35 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 6899999 9999999999999998 5699998543
No 367
>PLN02780 ketoreductase/ oxidoreductase
Probab=79.91 E-value=6.2 Score=39.31 Aligned_cols=55 Identities=15% Similarity=0.132 Sum_probs=39.1
Q ss_pred hcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEE
Q 012768 18 EKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAK 92 (456)
Q Consensus 18 ~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~ 92 (456)
.++.|+|.| .||+|.++|+.|+..|. ++.+++.+ ..+.+.+++.+++..+.+++.
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~-------------------~~~l~~~~~~l~~~~~~~~~~ 107 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARN-------------------PDKLKDVSDSIQSKYSKTQIK 107 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECC-------------------HHHHHHHHHHHHHHCCCcEEE
Confidence 467889998 57899999999999998 58887632 124555666666655544443
No 368
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=79.82 E-value=2.7 Score=44.15 Aligned_cols=44 Identities=25% Similarity=0.302 Sum_probs=35.1
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCCcc
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGI-GSITVIDGSKVEVGDLGNN 62 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv-~~itlvD~d~v~~~nl~r~ 62 (456)
...|+|||.|-+|..+|..|++.+- .+++|+|.+.+...--+||
T Consensus 24 ~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~g~GaSgrn 68 (460)
T TIGR03329 24 QADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCGAGASGRN 68 (460)
T ss_pred eeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcccccccccc
Confidence 3679999999999999999999832 4799999887754444444
No 369
>PRK06932 glycerate dehydrogenase; Provisional
Probab=79.68 E-value=1.5 Score=43.67 Aligned_cols=35 Identities=11% Similarity=0.161 Sum_probs=30.4
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768 15 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD 50 (456)
..|..++|.|+|.|.+|.++|+-|.-.|+. +..+|
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~fg~~-V~~~~ 177 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQALGMK-VLYAE 177 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhcCCCE-EEEEC
Confidence 469999999999999999999999988884 55555
No 370
>PRK06198 short chain dehydrogenase; Provisional
Probab=79.65 E-value=1.7 Score=41.23 Aligned_cols=36 Identities=8% Similarity=0.149 Sum_probs=31.1
Q ss_pred HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
.+++++|+|.| .|++|..+++.|+..|...+.+++.
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r 39 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGR 39 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcC
Confidence 36778899998 5889999999999999987888864
No 371
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.62 E-value=5.9 Score=39.02 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=29.0
Q ss_pred HHHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768 15 AALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 15 ~~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD 50 (456)
..|++++++|.| .||+|.++++.|+..|. ++.++|
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~ 43 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGA-TVVVND 43 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEec
Confidence 357788899998 57899999999999998 466665
No 372
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=79.62 E-value=2.2 Score=37.36 Aligned_cols=33 Identities=15% Similarity=0.200 Sum_probs=28.6
Q ss_pred CcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 20 ASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 20 ~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
+.|+|.| .+|+|.++++.|+..|-.++.+++..
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~ 34 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRS 34 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec
Confidence 3688888 78999999999999999999988644
No 373
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=79.57 E-value=2.4 Score=42.34 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=27.1
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
+|.|+|+|++|+.++..|...| ..+++++.+
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g-~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKK-ISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCC-CeEEEEecC
Confidence 5999999999999999999999 457888753
No 374
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=79.55 E-value=9.8 Score=38.45 Aligned_cols=96 Identities=18% Similarity=0.175 Sum_probs=50.7
Q ss_pred cEEEEcC-ChhHHHHHHHHHHcCCCcEE-EEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecCh
Q 012768 21 SVCLLNC-GPTGSETLKNLVLGGIGSIT-VIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP 98 (456)
Q Consensus 21 ~VlIiG~-gglG~eiaknLvl~Gv~~it-lvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~ 98 (456)
+|.|+|+ |.+|.++++.|...-.-+++ +++.+. ..|+. +.+..|.+.... ....
T Consensus 2 kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~---------------sagk~--------~~~~~~~l~~~~-~~~~ 57 (346)
T TIGR01850 2 KVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE---------------SAGKP--------VSEVHPHLRGLV-DLNL 57 (346)
T ss_pred EEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch---------------hcCCC--------hHHhCccccccC-Ccee
Confidence 7999998 78999999999865333344 545331 12221 222233222100 0000
Q ss_pred hhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEe
Q 012768 99 EALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFAR 143 (456)
Q Consensus 99 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~ 143 (456)
... +..++..+.|+|++|..+... ..+...+.+.++.+|+.+
T Consensus 58 ~~~--~~~~~~~~~DvVf~alP~~~s-~~~~~~~~~~G~~VIDlS 99 (346)
T TIGR01850 58 EPI--DEEEIAEDADVVFLALPHGVS-AELAPELLAAGVKVIDLS 99 (346)
T ss_pred ecC--CHHHhhcCCCEEEECCCchHH-HHHHHHHHhCCCEEEeCC
Confidence 000 011223478999998866444 344444556777777653
No 375
>PRK07574 formate dehydrogenase; Provisional
Probab=79.54 E-value=2.3 Score=43.65 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=31.6
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 15 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
..|..++|.|+|+|.+|..+|+.|...|+ ++..+|.
T Consensus 188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr 223 (385)
T PRK07574 188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDR 223 (385)
T ss_pred eecCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECC
Confidence 45899999999999999999999999998 4777764
No 376
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=79.54 E-value=15 Score=36.65 Aligned_cols=33 Identities=30% Similarity=0.411 Sum_probs=28.5
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768 18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD 50 (456)
...+|+|.|+|++|..++.-+...|+..++.+|
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~ 192 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAID 192 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEC
Confidence 357999999999999999999999998777765
No 377
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=79.47 E-value=3.8 Score=40.39 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=30.4
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
...++|.|+|-|-+|.+.||..+..|.. +||+|-.
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~-Vtild~n 200 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGAD-VTILDLN 200 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCe-eEEEecC
Confidence 5678999999999999999999988875 8998843
No 378
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=79.46 E-value=12 Score=37.85 Aligned_cols=32 Identities=25% Similarity=0.405 Sum_probs=28.0
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD 50 (456)
..+|+|.|+|++|..++.-+-..|++++..+|
T Consensus 192 g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~ 223 (371)
T cd08281 192 GQSVAVVGLGGVGLSALLGAVAAGASQVVAVD 223 (371)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcEEEEc
Confidence 46899999999999998888889998888776
No 379
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.36 E-value=2.1 Score=40.10 Aligned_cols=35 Identities=11% Similarity=0.206 Sum_probs=29.5
Q ss_pred HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
.+++.+|+|.| .|++|..+++.|+..|. ++.+++.
T Consensus 4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r 39 (239)
T PRK07666 4 SLQGKNALITGAGRGIGRAVAIALAKEGV-NVGLLAR 39 (239)
T ss_pred cCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 45678899998 67899999999999998 7888763
No 380
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=79.33 E-value=9.2 Score=39.96 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=33.6
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
.|+.++|.|-|.|-+|..+|+.|...|.+=+++-|.+
T Consensus 234 ~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~ 270 (454)
T PTZ00079 234 SLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSD 270 (454)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 3778999999999999999999999999988888855
No 381
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=79.21 E-value=2.4 Score=43.72 Aligned_cols=36 Identities=14% Similarity=0.094 Sum_probs=31.7
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
+...+|+|+|+|.+|.-+|+.+...|. +++++|.|.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp 228 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDP 228 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCCh
Confidence 578899999999999999999999998 488887544
No 382
>PRK08163 salicylate hydroxylase; Provisional
Probab=79.08 E-value=2.5 Score=43.09 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=30.5
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
..+|+|||+|..|..+|..|.+.|+. ++|+|...
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~-v~v~Er~~ 37 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIK-VKLLEQAA 37 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCc-EEEEeeCc
Confidence 46899999999999999999999994 99998654
No 383
>PRK08374 homoserine dehydrogenase; Provisional
Probab=79.04 E-value=11 Score=38.09 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=19.2
Q ss_pred CcEEEEcCChhHHHHHHHHHH
Q 012768 20 ASVCLLNCGPTGSETLKNLVL 40 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl 40 (456)
-+|.|+|+|.+|+.+++.|..
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~ 23 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAE 23 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHH
Confidence 589999999999999999876
No 384
>PRK12862 malic enzyme; Reviewed
Probab=79.02 E-value=1.8 Score=48.23 Aligned_cols=40 Identities=25% Similarity=0.243 Sum_probs=35.9
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHcCCC--cEEEEeCCcc
Q 012768 15 AALEKASVCLLNCGPTGSETLKNLVLGGIG--SITVIDGSKV 54 (456)
Q Consensus 15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~--~itlvD~d~v 54 (456)
++|++.+|++.|+|+.|.-+++.|+..|+. +|.++|..-+
T Consensus 189 ~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~ 230 (763)
T PRK12862 189 KDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGV 230 (763)
T ss_pred CChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCe
Confidence 478899999999999999999999999995 9999996543
No 385
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=79.00 E-value=2.3 Score=45.67 Aligned_cols=32 Identities=28% Similarity=0.574 Sum_probs=24.4
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
+++|+|||+|..|-..+|+|...|+ .+++++.
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~-~~~~fE~ 32 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGL-EVTCFEK 32 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT--EEEEEES
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-CCeEEec
Confidence 4799999999999999999999999 4778773
No 386
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=78.99 E-value=2.4 Score=42.89 Aligned_cols=33 Identities=18% Similarity=0.373 Sum_probs=29.5
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV 54 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v 54 (456)
.|+|||+|..|..+|..|.+.|+ +++|+|....
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~-~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGL-KIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCC-EEEEEeCCCc
Confidence 38999999999999999999998 6899987654
No 387
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=78.92 E-value=21 Score=34.33 Aligned_cols=94 Identities=16% Similarity=0.228 Sum_probs=58.3
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcc-hHHHHHHHHHHhCCCCEEEEEecC
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGES-KAKSVCAFLQELNDAVKAKFIEEY 97 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~-Ka~~~~~~l~~lnp~v~v~~~~~~ 97 (456)
..+|+|+|-.+=|-.+++.|...|+.-+.-+-.+.=... + .-..-.+|.- -.+.+.+.+++
T Consensus 2 ~~~IlvlgGT~egr~la~~L~~~g~~v~~Svat~~g~~~----~-~~~~v~~G~l~~~~~l~~~l~~------------- 63 (248)
T PRK08057 2 MPRILLLGGTSEARALARALAAAGVDIVLSLAGRTGGPA----D-LPGPVRVGGFGGAEGLAAYLRE------------- 63 (248)
T ss_pred CceEEEEechHHHHHHHHHHHhCCCeEEEEEccCCCCcc----c-CCceEEECCCCCHHHHHHHHHH-------------
Confidence 367999999999999999999998754433321110000 0 0001112333 33334333321
Q ss_pred hhhhhcCCcCCCCCCcEEEEcCCChHH--HHHHHHHHHHcCCeEEEE
Q 012768 98 PEALIEMNPPFFSQFTLVVATQLGEEK--MIKLDRICREANVMLIFA 142 (456)
Q Consensus 98 ~~~~~~~~~~~~~~~dvVi~~~~~~~~--~~~l~~~~~~~~ip~i~~ 142 (456)
.++++||+++.+... ...+.+.|.+.++|++-.
T Consensus 64 ------------~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~ 98 (248)
T PRK08057 64 ------------EGIDLVIDATHPYAAQISANAAAACRALGIPYLRL 98 (248)
T ss_pred ------------CCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEE
Confidence 167899999998765 456778999999997743
No 388
>PRK07589 ornithine cyclodeaminase; Validated
Probab=78.90 E-value=5.6 Score=40.24 Aligned_cols=74 Identities=11% Similarity=0.095 Sum_probs=50.3
Q ss_pred cCcEEEEcCChhHHHHHHHHH-HcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecC
Q 012768 19 KASVCLLNCGPTGSETLKNLV-LGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY 97 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLv-l~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~ 97 (456)
..+++|+|+|..+..-++.+. .-.+.++.+++. ...|+++.++.+++ +.+++...+ +
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r-------------------~~~~a~~~~~~~~~--~~~~v~~~~-~ 186 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDI-------------------DPAATAKLARNLAG--PGLRIVACR-S 186 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeC-------------------CHHHHHHHHHHHHh--cCCcEEEeC-C
Confidence 477999999999987776554 447888888852 23477777777776 345555432 2
Q ss_pred hhhhhcCCcCCCCCCcEEEEcCCC
Q 012768 98 PEALIEMNPPFFSQFTLVVATQLG 121 (456)
Q Consensus 98 ~~~~~~~~~~~~~~~dvVi~~~~~ 121 (456)
+ .+.+.+.|+|++++.+
T Consensus 187 ~-------~~av~~ADIIvtaT~S 203 (346)
T PRK07589 187 V-------AEAVEGADIITTVTAD 203 (346)
T ss_pred H-------HHHHhcCCEEEEecCC
Confidence 2 2335689999987754
No 389
>PRK06753 hypothetical protein; Provisional
Probab=78.89 E-value=2.8 Score=42.40 Aligned_cols=32 Identities=16% Similarity=0.284 Sum_probs=29.0
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
+|+|||+|..|..+|..|.+.|+. ++|++.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~-v~v~E~~~ 33 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHE-VKVFEKNE 33 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCc-EEEEecCC
Confidence 799999999999999999999996 89988554
No 390
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=78.87 E-value=4.2 Score=40.34 Aligned_cols=32 Identities=22% Similarity=0.355 Sum_probs=28.0
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
.+|.|||+|-.|+-||..++.+|. .+++.|..
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~-~V~l~D~~ 35 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGY-DVVLKDIS 35 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCC-ceEEEeCC
Confidence 689999999999999999999665 58898854
No 391
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=78.77 E-value=2.6 Score=43.78 Aligned_cols=40 Identities=18% Similarity=0.367 Sum_probs=36.0
Q ss_pred HHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 12 QGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 12 ~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
.+.++.++++|+|||+|..|-..|..|.-.|+..++|+..
T Consensus 14 ~~~~~~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa 53 (498)
T KOG0685|consen 14 SGLKARGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEA 53 (498)
T ss_pred hhhhccCCceEEEECCchHHHHHHHHHHHhCCceEEEEEe
Confidence 4667788899999999999999999999999999999864
No 392
>PRK07856 short chain dehydrogenase; Provisional
Probab=78.74 E-value=7.1 Score=36.90 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=30.2
Q ss_pred HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
+++++++|.| .|++|.++++.|+..|. +++++|.+.
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~ 40 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRA 40 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCh
Confidence 5678899998 57899999999999998 577877543
No 393
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=78.69 E-value=2.2 Score=41.71 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=24.8
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCc
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGS 45 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~ 45 (456)
..+|+|+|+|.+|..+++.|-..|...
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v 29 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVV 29 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeE
Confidence 468999999999999999999999974
No 394
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=78.60 E-value=2.6 Score=43.30 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=30.9
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV 54 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v 54 (456)
..+|+|||+|..|..+|-.|.+.|+ +++|+|....
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~ 52 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGL-RIALIEAQPA 52 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCC-EEEEEecCCc
Confidence 4679999999999999999999998 4999997653
No 395
>PLN02256 arogenate dehydrogenase
Probab=78.60 E-value=2.6 Score=41.77 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=29.7
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
+.+..+|.|||+|.+|..+++.|...|. .++.+|.
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~ 67 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSR 67 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEEC
Confidence 4566789999999999999999999885 6777774
No 396
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=78.48 E-value=3 Score=39.35 Aligned_cols=36 Identities=11% Similarity=0.169 Sum_probs=30.5
Q ss_pred HHHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 15 AALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 15 ~~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
..+++.+|+|.| .|++|..+++.|+..|. ++.++|.
T Consensus 8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r 44 (247)
T PRK08945 8 DLLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGR 44 (247)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeC
Confidence 457788999998 67899999999999997 7777764
No 397
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=78.42 E-value=4.3 Score=45.24 Aligned_cols=32 Identities=16% Similarity=0.226 Sum_probs=29.1
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
.+|.|||+|..|+-||-.++++|. .++++|.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~ 345 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDIN 345 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCC
Confidence 579999999999999999999997 69999944
No 398
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=78.39 E-value=8.1 Score=43.17 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=28.1
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeC
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGI-GSITVIDG 51 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv-~~itlvD~ 51 (456)
.+|.|||+|.+|..+++.|...|. .+++++|.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~ 36 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDR 36 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 579999999999999999999996 45888874
No 399
>PRK08244 hypothetical protein; Provisional
Probab=78.38 E-value=2.6 Score=44.61 Aligned_cols=33 Identities=30% Similarity=0.476 Sum_probs=29.5
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
...|+|||+|..|..+|..|.+.|+ +++|+|..
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~-~v~viEr~ 34 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGV-KTCVIERL 34 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 3679999999999999999999999 48999854
No 400
>PLN03075 nicotianamine synthase; Provisional
Probab=78.31 E-value=21 Score=35.21 Aligned_cols=112 Identities=12% Similarity=0.135 Sum_probs=58.3
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHH---HhCCCCEEEE
Q 012768 18 EKASVCLLNCGPTGSETLKNLVLGGI-GSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQ---ELNDAVKAKF 93 (456)
Q Consensus 18 ~~~~VlIiG~gglG~eiaknLvl~Gv-~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~---~lnp~v~v~~ 93 (456)
...+|+-||||++|-..+-.+...+. ++++=+|.+.- ..+.+++.+. .+.+.++...
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~-------------------ai~~Ar~~~~~~~gL~~rV~F~~ 183 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPS-------------------ANDVARRLVSSDPDLSKRMFFHT 183 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHH-------------------HHHHHHHHhhhccCccCCcEEEE
Confidence 78999999999886655444444333 46777774331 2222333332 2334555554
Q ss_pred EecChhhhhcCCcCCCCCCcEEEEcC----CChHHHHHHHHHHHHc--CCeEEEEeeccceeeEEee
Q 012768 94 IEEYPEALIEMNPPFFSQFTLVVATQ----LGEEKMIKLDRICREA--NVMLIFARSYGLTGFVRIS 154 (456)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~dvVi~~~----~~~~~~~~l~~~~~~~--~ip~i~~~~~G~~G~v~~~ 154 (456)
.+. ... .....+||+|++.. +.......+..+.+.. |-.++.....|..+.++-.
T Consensus 184 ~Da--~~~----~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~ 244 (296)
T PLN03075 184 ADV--MDV----TESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPV 244 (296)
T ss_pred Cch--hhc----ccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCC
Confidence 322 111 12256899999653 1122233344444332 2234545468888866653
No 401
>PRK08265 short chain dehydrogenase; Provisional
Probab=78.29 E-value=2.1 Score=40.94 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=29.2
Q ss_pred HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768 16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD 50 (456)
.+++++++|.| .|++|.++++.|+..|. +++++|
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~ 37 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGA-RVAIVD 37 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEe
Confidence 46678999998 58999999999999998 677776
No 402
>PRK06847 hypothetical protein; Provisional
Probab=78.26 E-value=2.9 Score=42.24 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=30.0
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
..+|+|||.|..|..+|..|.+.|+. ++|+|...
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~-v~v~E~~~ 37 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIA-VDLVEIDP 37 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCC-EEEEecCC
Confidence 45799999999999999999999985 89988653
No 403
>PRK09414 glutamate dehydrogenase; Provisional
Probab=78.25 E-value=11 Score=39.43 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=31.5
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
.|+..+|.|.|.|.+|+.+|+.|...|.+=+.+-|.
T Consensus 229 ~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs 264 (445)
T PRK09414 229 SFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDS 264 (445)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcC
Confidence 378899999999999999999999999876666673
No 404
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=78.24 E-value=2.8 Score=42.84 Aligned_cols=31 Identities=23% Similarity=0.541 Sum_probs=28.3
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
.|+|||+|+.|+..|..|++.|.. ++++|..
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~-V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIE-TILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCc-EEEEECC
Confidence 599999999999999999999975 8899875
No 405
>PRK06834 hypothetical protein; Provisional
Probab=78.16 E-value=2.7 Score=44.58 Aligned_cols=35 Identities=23% Similarity=0.482 Sum_probs=30.8
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
....|+|||+|.+|..+|-.|.+.|+. ++|+|...
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~-v~vlEr~~ 36 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVD-VAIVERRP 36 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCc-EEEEecCC
Confidence 357899999999999999999999985 88988654
No 406
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=78.12 E-value=3.4 Score=44.06 Aligned_cols=43 Identities=7% Similarity=0.195 Sum_probs=34.6
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCcc
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNN 62 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~ 62 (456)
...|+|||.|.+|+-+|..|++.|.+ ++|+|...+....-+++
T Consensus 6 ~~DVvIIGGGi~G~~~A~~la~rGl~-V~LvEk~d~~~GtS~~s 48 (508)
T PRK12266 6 TYDLLVIGGGINGAGIARDAAGRGLS-VLLCEQDDLASATSSAS 48 (508)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCe-EEEEecCCCCCCccccc
Confidence 46799999999999999999999996 99999765544333444
No 407
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=78.11 E-value=2.7 Score=41.86 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=31.6
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 15 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
..|..++|.|+|.|.+|.++|+-+.-.|. ++..+|.
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm-~V~~~d~ 176 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGA-KVVYYST 176 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhcCC-EEEEECC
Confidence 46999999999999999999999988887 4777775
No 408
>PRK06841 short chain dehydrogenase; Provisional
Probab=78.10 E-value=3 Score=39.46 Aligned_cols=33 Identities=12% Similarity=0.230 Sum_probs=28.4
Q ss_pred HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768 17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD 50 (456)
+.+++|+|.| .|++|.++++.|+..|. ++.+++
T Consensus 13 ~~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~ 46 (255)
T PRK06841 13 LSGKVAVVTGGASGIGHAIAELFAAKGA-RVALLD 46 (255)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEe
Confidence 5678999999 58999999999999997 477765
No 409
>PRK08507 prephenate dehydrogenase; Validated
Probab=78.09 E-value=3 Score=40.58 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=26.6
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCC-cEEEEeC
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGIG-SITVIDG 51 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv~-~itlvD~ 51 (456)
+|.|||+|.+|..+++.|...|.. .++.+|.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~ 33 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDH 33 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 699999999999999999999973 5666663
No 410
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=78.03 E-value=2.5 Score=42.86 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=28.7
Q ss_pred cEEEEcCChhHHHHHHHHHHcC-CCcEEEEeCCc
Q 012768 21 SVCLLNCGPTGSETLKNLVLGG-IGSITVIDGSK 53 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~G-v~~itlvD~d~ 53 (456)
.|+|||+|..|+.+|..|.+.| + +++|+|...
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~-~v~v~E~~~ 33 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKI-KIALIEANS 33 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCc-eEEEEeCCC
Confidence 3899999999999999999999 8 589998664
No 411
>PLN03139 formate dehydrogenase; Provisional
Probab=77.93 E-value=2.6 Score=43.26 Aligned_cols=36 Identities=22% Similarity=0.164 Sum_probs=31.7
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 15 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
..|..++|.|||+|.+|..+|+.|...|+. +..+|.
T Consensus 195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~-V~~~d~ 230 (386)
T PLN03139 195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCN-LLYHDR 230 (386)
T ss_pred cCCCCCEEEEEeecHHHHHHHHHHHHCCCE-EEEECC
Confidence 469999999999999999999999999985 666764
No 412
>PRK07109 short chain dehydrogenase; Provisional
Probab=77.93 E-value=5.6 Score=39.84 Aligned_cols=34 Identities=12% Similarity=0.300 Sum_probs=28.7
Q ss_pred HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768 16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD 50 (456)
.+.+++|+|.| .||+|.++++.|+..|. ++++++
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~ 39 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGA-KVVLLA 39 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEE
Confidence 46678899998 58999999999999997 577776
No 413
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=77.91 E-value=2.7 Score=42.14 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=28.2
Q ss_pred cEEEEcC-ChhHHHHHHHHHHcCCC------cEEEEeC
Q 012768 21 SVCLLNC-GPTGSETLKNLVLGGIG------SITVIDG 51 (456)
Q Consensus 21 ~VlIiG~-gglG~eiaknLvl~Gv~------~itlvD~ 51 (456)
||+|+|+ |.+|+.++-.|+..|+- .+.|+|-
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~ 38 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDI 38 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEec
Confidence 6999999 99999999999999996 4999984
No 414
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=77.89 E-value=12 Score=37.76 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=22.8
Q ss_pred cCcEEEEcC-ChhHHHHHHHHHHcCCCcEEE
Q 012768 19 KASVCLLNC-GPTGSETLKNLVLGGIGSITV 48 (456)
Q Consensus 19 ~~~VlIiG~-gglG~eiaknLvl~Gv~~itl 48 (456)
..+|.|+|+ |.+|.|+++-|...+.-.+.|
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l 37 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSL 37 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCcceE
Confidence 468999995 668999999999855543333
No 415
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=77.89 E-value=2.7 Score=42.81 Aligned_cols=30 Identities=20% Similarity=0.455 Sum_probs=27.7
Q ss_pred EEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 22 VCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 22 VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
|+|||+|..|..+|..|.+.|. +++|+|..
T Consensus 2 viIiGaG~AGl~~A~~la~~g~-~v~liE~~ 31 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELARPGL-RVQLIEPH 31 (388)
T ss_pred EEEECCCHHHHHHHHHHHhCCC-eEEEEccC
Confidence 8999999999999999999998 69999964
No 416
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=77.89 E-value=11 Score=36.74 Aligned_cols=31 Identities=16% Similarity=0.275 Sum_probs=25.3
Q ss_pred cEEEEc-CChhHHHHHHHHHHcCC-CcEEEEeC
Q 012768 21 SVCLLN-CGPTGSETLKNLVLGGI-GSITVIDG 51 (456)
Q Consensus 21 ~VlIiG-~gglG~eiaknLvl~Gv-~~itlvD~ 51 (456)
+|+|.| .|.+|..+++.|...|- .+++++|.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~ 33 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK 33 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence 589998 58899999999999874 46777763
No 417
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=77.85 E-value=23 Score=33.82 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=26.3
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
...+|+-+|||. |. ++..+.+.|.++++-+|.+.
T Consensus 119 ~~~~VLDiGcGs-G~-l~i~~~~~g~~~v~giDis~ 152 (250)
T PRK00517 119 PGKTVLDVGCGS-GI-LAIAAAKLGAKKVLAVDIDP 152 (250)
T ss_pred CCCEEEEeCCcH-HH-HHHHHHHcCCCeEEEEECCH
Confidence 678999999987 64 44467788988899898553
No 418
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=77.83 E-value=23 Score=35.10 Aligned_cols=98 Identities=17% Similarity=0.222 Sum_probs=54.1
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHc-CCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768 18 EKASVCLLNCGPTGSETLKNLVLG-GIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE 96 (456)
Q Consensus 18 ~~~~VlIiG~gglG~eiaknLvl~-Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~ 96 (456)
++-+|.|||+|.+|...+..|.+. ++.=..++|.|.- .+.. .+-+++ .+... ..
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~e------------------s~gl---a~A~~~--Gi~~~--~~ 57 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPE------------------SDGL---ARARRL--GVATS--AE 57 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChh------------------hHHH---HHHHHc--CCCcc--cC
Confidence 457899999999999988887764 2322223432210 0010 111122 12211 11
Q ss_pred ChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEe
Q 012768 97 YPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFAR 143 (456)
Q Consensus 97 ~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~ 143 (456)
..+.+.+ ...|.+.|+|+.++.+ .........+.+.|+.+|+-.
T Consensus 58 ~ie~LL~--~~~~~dIDiVf~AT~a-~~H~e~a~~a~eaGk~VID~s 101 (302)
T PRK08300 58 GIDGLLA--MPEFDDIDIVFDATSA-GAHVRHAAKLREAGIRAIDLT 101 (302)
T ss_pred CHHHHHh--CcCCCCCCEEEECCCH-HHHHHHHHHHHHcCCeEEECC
Confidence 2233322 1235679999988765 345566777888888777643
No 419
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=77.82 E-value=3 Score=42.73 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=29.7
Q ss_pred CcEEEEcCChhHHHHHHHHHHc--CCCcEEEEeCCc
Q 012768 20 ASVCLLNCGPTGSETLKNLVLG--GIGSITVIDGSK 53 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~--Gv~~itlvD~d~ 53 (456)
..|+|||+|.+|+.+|..|++. |. +++|+|...
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~-~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGA-RIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCC-eEEEEeCCC
Confidence 6799999999999999999998 75 799999764
No 420
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=77.81 E-value=14 Score=35.39 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=25.3
Q ss_pred EEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 22 VCLLN-CGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 22 VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
|+|.| +|-+|+.+++.|...|. +++.++.+.
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~ 32 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGH-EVTILTRSP 32 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCC-EEEEEeCCC
Confidence 67888 57799999999999995 587777544
No 421
>PRK14030 glutamate dehydrogenase; Provisional
Probab=77.74 E-value=15 Score=38.46 Aligned_cols=37 Identities=11% Similarity=0.106 Sum_probs=32.8
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
.|+.++|.|-|.|.+|+.+|+.|...|.+=+++-|.+
T Consensus 225 ~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~ 261 (445)
T PRK14030 225 DIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPD 261 (445)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 3778999999999999999999999999888876643
No 422
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=77.71 E-value=18 Score=37.11 Aligned_cols=55 Identities=11% Similarity=0.180 Sum_probs=40.7
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEE
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKF 93 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~ 93 (456)
.+|||+|.|+++..+|-++-..|-+++-++-... .|++...+.|++-.-.+++.+
T Consensus 2 ~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S-------------------~rSq~f~~aL~~~~~~~~v~v 56 (429)
T PF10100_consen 2 GNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRES-------------------VRSQRFFEALARSDGLFEVSV 56 (429)
T ss_pred CceEEEcCCHHHHHHHHHHHhccCceeeeecCcc-------------------hhHHHHHHHHHhCCCEEEEee
Confidence 5899999999999999999999999998874211 356666666665444445443
No 423
>PRK14031 glutamate dehydrogenase; Provisional
Probab=77.66 E-value=9.2 Score=39.94 Aligned_cols=37 Identities=16% Similarity=0.142 Sum_probs=33.2
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
.|+.++|+|.|.|-+|+..|+.|...|.+=+++-|.+
T Consensus 225 ~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~ 261 (444)
T PRK14031 225 DLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSD 261 (444)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 4789999999999999999999999999988877733
No 424
>PRK07190 hypothetical protein; Provisional
Probab=77.54 E-value=3 Score=44.22 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=29.8
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
..|+|||+|++|.-+|-.|.+.|+. ++|+|...
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~-V~llEr~~ 38 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLN-TVIVDKSD 38 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCC-EEEEeCCC
Confidence 5799999999999999999999996 89998654
No 425
>PRK05868 hypothetical protein; Validated
Probab=77.43 E-value=3.2 Score=42.27 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=29.7
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
.+|+|+|.|..|..+|..|.+.|+. ++|+|...
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~-v~viE~~~ 34 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYS-VTMVERHP 34 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Confidence 3799999999999999999999986 99999653
No 426
>PLN02740 Alcohol dehydrogenase-like
Probab=77.42 E-value=16 Score=37.15 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=28.9
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
..+|+|+|+|++|..++.-+...|+.+++.+|.
T Consensus 199 g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~ 231 (381)
T PLN02740 199 GSSVAIFGLGAVGLAVAEGARARGASKIIGVDI 231 (381)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcC
Confidence 568999999999999999888999988888864
No 427
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=77.38 E-value=8.6 Score=39.10 Aligned_cols=33 Identities=27% Similarity=0.346 Sum_probs=27.8
Q ss_pred hcCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 18 EKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 18 ~~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
++.+|+|.|. |-+|+.+++.|...|. .++.+|.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~-~V~~v~r 53 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGH-YIIASDW 53 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCC-EEEEEEe
Confidence 4578999995 8899999999999985 6888874
No 428
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=77.34 E-value=3.3 Score=45.42 Aligned_cols=41 Identities=15% Similarity=0.304 Sum_probs=33.8
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCc
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGN 61 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r 61 (456)
..|+|||.|.+|+.+|..|++.|.+ ++|+|.+.+...--++
T Consensus 72 ~DVvVIGGGi~Ga~~A~~lA~rGl~-V~LvE~~d~a~GtSsr 112 (627)
T PLN02464 72 LDVLVVGGGATGAGVALDAATRGLR-VGLVEREDFSSGTSSR 112 (627)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCE-EEEEeccccCCCcccc
Confidence 5699999999999999999999995 9999987654443333
No 429
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=77.32 E-value=3.2 Score=39.32 Aligned_cols=35 Identities=11% Similarity=0.112 Sum_probs=29.4
Q ss_pred HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
.+++++|+|.| .|++|..+++.|+..|. ++.++|.
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r 42 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGR 42 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeC
Confidence 36788999998 58999999999999997 5777653
No 430
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=77.30 E-value=1.9 Score=43.19 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=31.4
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
.|..++|.|||+|.+|+.+|+-|...|++ +..+|+
T Consensus 139 el~gkTvGIiG~G~IG~~va~~l~afgm~-v~~~d~ 173 (324)
T COG0111 139 ELAGKTVGIIGLGRIGRAVAKRLKAFGMK-VIGYDP 173 (324)
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCCe-EEEECC
Confidence 67899999999999999999999999997 666674
No 431
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=77.29 E-value=9.7 Score=39.65 Aligned_cols=32 Identities=13% Similarity=0.247 Sum_probs=22.4
Q ss_pred cEEEEcCChhHHHHHH--HHHHc-CC--CcEEEEeCC
Q 012768 21 SVCLLNCGPTGSETLK--NLVLG-GI--GSITVIDGS 52 (456)
Q Consensus 21 ~VlIiG~gglG~eiak--nLvl~-Gv--~~itlvD~d 52 (456)
+|.|||+|++|...+- .++.. +. ..++|+|.+
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did 38 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDID 38 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCC
Confidence 6999999999887554 45422 22 479999843
No 432
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=77.24 E-value=2.9 Score=42.54 Aligned_cols=33 Identities=24% Similarity=0.490 Sum_probs=29.6
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
..|+|||+|..|..+|..|.+.|+ +++|+|...
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~-~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGI-KTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCC-eEEEecCCC
Confidence 369999999999999999999998 599999654
No 433
>PRK12861 malic enzyme; Reviewed
Probab=77.23 E-value=2.2 Score=47.44 Aligned_cols=40 Identities=25% Similarity=0.232 Sum_probs=36.1
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHcCCC--cEEEEeCCcc
Q 012768 15 AALEKASVCLLNCGPTGSETLKNLVLGGIG--SITVIDGSKV 54 (456)
Q Consensus 15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~--~itlvD~d~v 54 (456)
++|++.+|++.|+|+.|.-+++.|+..|+. +|.++|..-+
T Consensus 185 k~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gl 226 (764)
T PRK12861 185 KSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGV 226 (764)
T ss_pred CChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCe
Confidence 578899999999999999999999999997 8999996543
No 434
>PRK12828 short chain dehydrogenase; Provisional
Probab=77.20 E-value=2.9 Score=38.86 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=29.7
Q ss_pred HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
++++++|+|.| .|++|..+++.|+..|.. +.++|.
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~-v~~~~r 39 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGAR-VALIGR 39 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCe-EEEEeC
Confidence 46678999998 588999999999999975 777764
No 435
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=77.14 E-value=2.5 Score=46.95 Aligned_cols=39 Identities=23% Similarity=0.298 Sum_probs=35.6
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHcCCC--cEEEEeCCc
Q 012768 15 AALEKASVCLLNCGPTGSETLKNLVLGGIG--SITVIDGSK 53 (456)
Q Consensus 15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~--~itlvD~d~ 53 (456)
++|++.+|++.|+|+.|.-+++.|+..|+. +|.++|..-
T Consensus 181 ~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G 221 (752)
T PRK07232 181 KKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKG 221 (752)
T ss_pred CChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCC
Confidence 478899999999999999999999999995 999999654
No 436
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=77.10 E-value=8.4 Score=39.52 Aligned_cols=33 Identities=33% Similarity=0.322 Sum_probs=26.7
Q ss_pred hcCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEe
Q 012768 18 EKASVCLLNC-GPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 18 ~~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD 50 (456)
+..+|+|+|+ |.+|.|+++.|......+++.+-
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~ 70 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMT 70 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEE
Confidence 4558999996 66999999999988666777764
No 437
>PRK07045 putative monooxygenase; Reviewed
Probab=77.04 E-value=3.1 Score=42.36 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=30.2
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
..+|+|||+|..|...|-.|.+.|+ +++|+|...
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~-~v~v~E~~~ 38 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGH-SVTVVERAA 38 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCC-cEEEEeCCC
Confidence 3579999999999999999999999 489998655
No 438
>PRK12829 short chain dehydrogenase; Provisional
Probab=77.02 E-value=3.5 Score=39.10 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=31.0
Q ss_pred HHHHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768 14 QAALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 14 q~~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD 50 (456)
...+++.+|+|.| .|++|..+++.|+..|.. +++++
T Consensus 6 ~~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~-V~~~~ 42 (264)
T PRK12829 6 LKPLDGLRVLVTGGASGIGRAIAEAFAEAGAR-VHVCD 42 (264)
T ss_pred hhccCCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEe
Confidence 4458889999998 588999999999999985 77776
No 439
>PRK08226 short chain dehydrogenase; Provisional
Probab=77.01 E-value=2.2 Score=40.68 Aligned_cols=34 Identities=12% Similarity=0.200 Sum_probs=29.2
Q ss_pred HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768 16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD 50 (456)
++.+++++|.| .|++|..+++.|+..|.. +++++
T Consensus 3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~-Vv~~~ 37 (263)
T PRK08226 3 KLTGKTALITGALQGIGEGIARVFARHGAN-LILLD 37 (263)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEec
Confidence 46788999998 788999999999999975 77775
No 440
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=77.00 E-value=2.6 Score=42.93 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=30.4
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHc---CCCcEEEEeCC
Q 012768 18 EKASVCLLNCGPTGSETLKNLVLG---GIGSITVIDGS 52 (456)
Q Consensus 18 ~~~~VlIiG~gglG~eiaknLvl~---Gv~~itlvD~d 52 (456)
+...|+|||+|..|..+|-.|.+. |+. ++|+|..
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~-v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLP-VALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCE-EEEEeCC
Confidence 457899999999999999999998 985 9999975
No 441
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=77.00 E-value=20 Score=34.42 Aligned_cols=93 Identities=16% Similarity=0.211 Sum_probs=56.5
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec-Ch
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE-YP 98 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~-~~ 98 (456)
.+|+|+|-.+=|-++++.|...|. +.+ . | ..+++. +.+....+.+.+..-.- ..
T Consensus 1 m~ILvlgGTtE~r~la~~L~~~g~--v~~-s---v-~t~~g~------------------~~~~~~~~~~~v~~G~lg~~ 55 (249)
T PF02571_consen 1 MKILVLGGTTEGRKLAERLAEAGY--VIV-S---V-ATSYGG------------------ELLKPELPGLEVRVGRLGDE 55 (249)
T ss_pred CEEEEEechHHHHHHHHHHHhcCC--EEE-E---E-EhhhhH------------------hhhccccCCceEEECCCCCH
Confidence 479999999999999999999998 222 1 1 111111 11112223333332111 11
Q ss_pred hhhhcCCcCCC--CCCcEEEEcCCChHH--HHHHHHHHHHcCCeEEE
Q 012768 99 EALIEMNPPFF--SQFTLVVATQLGEEK--MIKLDRICREANVMLIF 141 (456)
Q Consensus 99 ~~~~~~~~~~~--~~~dvVi~~~~~~~~--~~~l~~~~~~~~ip~i~ 141 (456)
+.+ .+++ .++++||+++.+... ...+.+.|++.++|++-
T Consensus 56 ~~l----~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR 98 (249)
T PF02571_consen 56 EGL----AEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLR 98 (249)
T ss_pred HHH----HHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEE
Confidence 111 1233 278899999999775 44677899999999774
No 442
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=76.89 E-value=3.3 Score=41.79 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=31.0
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
..+|+|+|.|.+|.|+|..|...|+.++++++..
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~ 205 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR 205 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence 5799999999999999999999999999999753
No 443
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=76.87 E-value=3 Score=39.58 Aligned_cols=33 Identities=15% Similarity=0.258 Sum_probs=28.1
Q ss_pred HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768 17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD 50 (456)
+.+.+|+|.| .|++|.++++.|+..|.. +.++|
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~~-v~~~~ 37 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGAR-VVIAD 37 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEc
Confidence 5678899998 589999999999999974 66765
No 444
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=76.65 E-value=3.3 Score=41.21 Aligned_cols=36 Identities=14% Similarity=0.211 Sum_probs=29.1
Q ss_pred HhcCcEEEEc-CChhHHHHHHHHHHcC-CCcEEEEeCC
Q 012768 17 LEKASVCLLN-CGPTGSETLKNLVLGG-IGSITVIDGS 52 (456)
Q Consensus 17 L~~~~VlIiG-~gglG~eiaknLvl~G-v~~itlvD~d 52 (456)
+++.+|+|.| .|++|+.+++.|+..| ..+++++|.+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~ 39 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRD 39 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 3567899998 5889999999999987 4578888743
No 445
>PRK08703 short chain dehydrogenase; Provisional
Probab=76.52 E-value=2.5 Score=39.63 Aligned_cols=34 Identities=12% Similarity=0.287 Sum_probs=28.5
Q ss_pred HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768 16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD 50 (456)
-|++++|+|.| .|++|.++++.|...|. ++++++
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~ 37 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGA-TVILVA 37 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEe
Confidence 35678999998 58899999999999997 477765
No 446
>PRK06823 ornithine cyclodeaminase; Validated
Probab=76.51 E-value=8.1 Score=38.54 Aligned_cols=74 Identities=14% Similarity=0.104 Sum_probs=49.9
Q ss_pred cCcEEEEcCChhHHHHHHHHH-HcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecC
Q 012768 19 KASVCLLNCGPTGSETLKNLV-LGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY 97 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLv-l~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~ 97 (456)
.+++.|+|+|..+-.-++.+. ...+.++.++|. ...|+++.++.+++.. +.+...+ +
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r-------------------~~~~a~~~~~~~~~~~--~~v~~~~-~ 185 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGR-------------------SETALEEYRQYAQALG--FAVNTTL-D 185 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECC-------------------CHHHHHHHHHHHHhcC--CcEEEEC-C
Confidence 478999999999988877765 346788888752 2357777777776543 3444332 1
Q ss_pred hhhhhcCCcCCCCCCcEEEEcCCC
Q 012768 98 PEALIEMNPPFFSQFTLVVATQLG 121 (456)
Q Consensus 98 ~~~~~~~~~~~~~~~dvVi~~~~~ 121 (456)
..+.+.+.|+|++++.+
T Consensus 186 -------~~~av~~ADIV~taT~s 202 (315)
T PRK06823 186 -------AAEVAHAANLIVTTTPS 202 (315)
T ss_pred -------HHHHhcCCCEEEEecCC
Confidence 12345689999977654
No 447
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=76.50 E-value=3.1 Score=36.76 Aligned_cols=32 Identities=31% Similarity=0.441 Sum_probs=27.6
Q ss_pred EEEcCChhHHHHHHHHHHcC----CCcEEEEeCCcc
Q 012768 23 CLLNCGPTGSETLKNLVLGG----IGSITVIDGSKV 54 (456)
Q Consensus 23 lIiG~gglG~eiaknLvl~G----v~~itlvD~d~v 54 (456)
.|||+|..|..+++.|++.. .-+|+|+|+...
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 48999999999999999985 678999987443
No 448
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=76.50 E-value=14 Score=37.36 Aligned_cols=36 Identities=22% Similarity=0.276 Sum_probs=25.4
Q ss_pred CCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEee
Q 012768 108 FFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARS 144 (456)
Q Consensus 108 ~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~ 144 (456)
.+.+.|+|+.++.+. ........+.+.|+++|..+.
T Consensus 75 l~~~vDVVIdaT~~~-~~~e~a~~~~~aGk~VI~~~~ 110 (341)
T PRK04207 75 LLEKADIVVDATPGG-VGAKNKELYEKAGVKAIFQGG 110 (341)
T ss_pred hhccCCEEEECCCch-hhHHHHHHHHHCCCEEEEcCC
Confidence 346799999887664 344555677888888887654
No 449
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=76.48 E-value=22 Score=35.65 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=26.4
Q ss_pred hcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 18 EKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 18 ~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
.+.+|+|.| +|.+|+.+++.|+..|.. +++++.
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~~-V~~~~r 42 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGYT-VHATLR 42 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence 356899999 578999999999999864 555543
No 450
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=76.45 E-value=3.2 Score=43.53 Aligned_cols=32 Identities=28% Similarity=0.514 Sum_probs=28.9
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
..|+|||+|+.|+..|..|++.|+. ++|+|..
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G~~-VlllEr~ 71 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGGIE-TFLIERK 71 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCc-EEEEecC
Confidence 4699999999999999999999985 8888865
No 451
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=76.36 E-value=2.9 Score=42.63 Aligned_cols=33 Identities=15% Similarity=0.369 Sum_probs=29.8
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
..|+|||.|..|+.+|..|++.|++ ++|+|...
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~~-V~liE~~~ 38 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGFS-VAVLEHAA 38 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCCE-EEEEcCCC
Confidence 5799999999999999999999984 99999754
No 452
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=76.33 E-value=7 Score=38.39 Aligned_cols=118 Identities=16% Similarity=0.226 Sum_probs=64.7
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecCh
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP 98 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~ 98 (456)
..+|-.||+|-.|+.+++||+.+|-+ +|++|.+.-....+ .+-|..-++.-++..+ ..+|-+..+....
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~G~k-VtV~dr~~~k~~~f--------~~~Ga~v~~sPaeVae--~sDvvitmv~~~~ 103 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKAGYK-VTVYDRTKDKCKEF--------QEAGARVANSPAEVAE--DSDVVITMVPNPK 103 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHcCCE-EEEEeCcHHHHHHH--------HHhchhhhCCHHHHHh--hcCEEEEEcCChH
Confidence 68899999999999999999999986 89988332111111 0112111111111111 2344444443221
Q ss_pred h--hhhcCCcCCCC-----CCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccc
Q 012768 99 E--ALIEMNPPFFS-----QFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGL 147 (456)
Q Consensus 99 ~--~~~~~~~~~~~-----~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~ 147 (456)
. ++.....-.++ +...|-.++.+......|.+.....+..+|.+-+.|-
T Consensus 104 ~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg 159 (327)
T KOG0409|consen 104 DVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGG 159 (327)
T ss_pred hhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCC
Confidence 1 11111111122 1222334455556778899988888888888876653
No 453
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.33 E-value=2.4 Score=40.38 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=29.5
Q ss_pred HHHhcCcEEEEcCC---hhHHHHHHHHHHcCCCcEEEEe
Q 012768 15 AALEKASVCLLNCG---PTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 15 ~~L~~~~VlIiG~g---glG~eiaknLvl~Gv~~itlvD 50 (456)
.+|++++|+|.|++ |+|.++|+.|+..|.. +.+.+
T Consensus 2 ~~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~-vi~~~ 39 (256)
T PRK12859 2 NQLKNKVAVVTGVSRLDGIGAAICKELAEAGAD-IFFTY 39 (256)
T ss_pred CCcCCcEEEEECCCCCCChHHHHHHHHHHCCCe-EEEEe
Confidence 46888999999985 8999999999999984 66654
No 454
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=76.25 E-value=18 Score=34.96 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=28.9
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768 18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD 50 (456)
...+|+|+|+|++|..++.-+...|+.+++.+|
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~ 152 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAAD 152 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEC
Confidence 467899999999999999888889998788776
No 455
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=76.18 E-value=16 Score=35.69 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=26.6
Q ss_pred cEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 21 SVCLLN-CGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 21 ~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
+|+|.| +|.+|..+++.|+..|. +++.+|..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~-~V~~~~r~ 33 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGE-EVRVLVRP 33 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCC-EEEEEEec
Confidence 689998 58899999999999995 68888754
No 456
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=76.06 E-value=3.5 Score=39.15 Aligned_cols=35 Identities=11% Similarity=0.174 Sum_probs=29.3
Q ss_pred HHHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768 15 AALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 15 ~~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD 50 (456)
.+|+.++|+|.| .|++|.++++.|+..|. +++++|
T Consensus 4 ~~~~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~ 39 (260)
T PRK12823 4 QRFAGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVD 39 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEe
Confidence 347778899998 58899999999999997 477766
No 457
>PRK06057 short chain dehydrogenase; Provisional
Probab=76.04 E-value=3.5 Score=39.13 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=28.8
Q ss_pred HHhcCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEe
Q 012768 16 ALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 16 ~L~~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD 50 (456)
+|.+.+|+|+|+ |++|..+++.|+..|. +++++|
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~ 38 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGA-TVVVGD 38 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEe
Confidence 467889999995 8999999999999996 467765
No 458
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=75.96 E-value=2.9 Score=43.82 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=0.0
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEE
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVI 49 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlv 49 (456)
++.++|+|||.|..|..++-.|...| +++|+.
T Consensus 173 ~~GKrV~VIG~GaSA~di~~~l~~~g-a~vt~~ 204 (443)
T COG2072 173 LRGKRVLVIGAGASAVDIAPELAEVG-ASVTLS 204 (443)
T ss_pred cCCCeEEEECCCccHHHHHHHHHhcC-CeeEEE
No 459
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=75.91 E-value=3.6 Score=38.72 Aligned_cols=33 Identities=18% Similarity=0.124 Sum_probs=28.3
Q ss_pred HhcCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEe
Q 012768 17 LEKASVCLLNC-GPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 17 L~~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD 50 (456)
|++++|+|.|+ |++|..+++.|+..|. ++.+++
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~ 36 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAG 36 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEc
Confidence 56789999995 7899999999999997 577765
No 460
>PRK07588 hypothetical protein; Provisional
Probab=75.90 E-value=3.7 Score=41.92 Aligned_cols=31 Identities=23% Similarity=0.183 Sum_probs=28.8
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
+|+|||.|..|..+|..|.+.|+. +++++..
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~-v~v~E~~ 32 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHE-PTLIERA 32 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCc-eEEEeCC
Confidence 799999999999999999999986 9999865
No 461
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=75.81 E-value=3.1 Score=44.54 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=34.6
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHH-----cCC------CcEEEEeCCc
Q 012768 15 AALEKASVCLLNCGPTGSETLKNLVL-----GGI------GSITVIDGSK 53 (456)
Q Consensus 15 ~~L~~~~VlIiG~gglG~eiaknLvl-----~Gv------~~itlvD~d~ 53 (456)
++|++.+|+++|+|+.|.-||+.|+. .|+ ++|.++|.+-
T Consensus 317 ~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~G 366 (581)
T PLN03129 317 GDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKG 366 (581)
T ss_pred CchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCC
Confidence 47889999999999999999999988 488 7999999764
No 462
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=75.79 E-value=18 Score=36.38 Aligned_cols=33 Identities=27% Similarity=0.538 Sum_probs=28.5
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
..+|+|.|+|++|..++.-.-..|+.+++.+|.
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~ 209 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDI 209 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 578999999999999988888889987887763
No 463
>PRK06500 short chain dehydrogenase; Provisional
Probab=75.75 E-value=2.7 Score=39.53 Aligned_cols=34 Identities=15% Similarity=0.294 Sum_probs=28.3
Q ss_pred HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768 16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD 50 (456)
++.+++|+|.| .|++|..+++.|+..|. ++.+++
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~ 37 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAEGA-RVAITG 37 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEec
Confidence 45678999998 58899999999999997 466654
No 464
>PRK08605 D-lactate dehydrogenase; Validated
Probab=75.74 E-value=3.2 Score=41.66 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=28.4
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHH-cCCCcEEEEeC
Q 012768 15 AALEKASVCLLNCGPTGSETLKNLVL-GGIGSITVIDG 51 (456)
Q Consensus 15 ~~L~~~~VlIiG~gglG~eiaknLvl-~Gv~~itlvD~ 51 (456)
..|+.++|.|||+|.+|..+|+.|.. .|+ .+..+|.
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~-~V~~~d~ 178 (332)
T PRK08605 142 RSIKDLKVAVIGTGRIGLAVAKIFAKGYGS-DVVAYDP 178 (332)
T ss_pred ceeCCCEEEEECCCHHHHHHHHHHHhcCCC-EEEEECC
Confidence 35899999999999999999999953 344 4555653
No 465
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=75.68 E-value=3.6 Score=44.20 Aligned_cols=35 Identities=20% Similarity=0.473 Sum_probs=30.5
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
....|+|||+|..|..+|..|.+.|+. ++|+|...
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~-v~viE~~~ 56 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVP-VVLLDDDD 56 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCc-EEEEeCCC
Confidence 456899999999999999999999995 88888553
No 466
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=75.47 E-value=12 Score=37.73 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=22.0
Q ss_pred cEEEEc-CChhHHHHHHHHHHcCCCcEEE
Q 012768 21 SVCLLN-CGPTGSETLKNLVLGGIGSITV 48 (456)
Q Consensus 21 ~VlIiG-~gglG~eiaknLvl~Gv~~itl 48 (456)
+|+|+| .|.+|.++++.|...|...+.+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l 29 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKL 29 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhE
Confidence 689999 5779999999998866554444
No 467
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=75.44 E-value=16 Score=29.53 Aligned_cols=58 Identities=10% Similarity=-0.051 Sum_probs=36.9
Q ss_pred HHHHHhCCCCEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEe
Q 012768 80 AFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFAR 143 (456)
Q Consensus 80 ~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~ 143 (456)
+.+++.+=.+++..... ..+. +...++|+|+.+..-......+.+.+...++|+....
T Consensus 25 ~~~~~~gi~~~v~a~~~--~~~~----~~~~~~Dvill~pqi~~~~~~i~~~~~~~~ipv~~I~ 82 (95)
T TIGR00853 25 KAAEEYGVPVKIAAGSY--GAAG----EKLDDADVVLLAPQVAYMLPDLKKETDKKGIPVEVIN 82 (95)
T ss_pred HHHHHCCCcEEEEEecH--HHHH----hhcCCCCEEEECchHHHHHHHHHHHhhhcCCCEEEeC
Confidence 55555555556555432 2221 2245789999887665567778888888899976653
No 468
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=75.44 E-value=6.5 Score=35.94 Aligned_cols=106 Identities=13% Similarity=0.091 Sum_probs=57.7
Q ss_pred cEEEEcCChhH-HHHHHHHHH----cCCCcEEEEeCCcccccCCCccccccccccCcchHH-HHHHHHHHhCCCCEEEEE
Q 012768 21 SVCLLNCGPTG-SETLKNLVL----GGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAK-SVCAFLQELNDAVKAKFI 94 (456)
Q Consensus 21 ~VlIiG~gglG-~eiaknLvl----~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~-~~~~~l~~lnp~v~v~~~ 94 (456)
||.|||+|++- ...+..++. .+.+.|+|+|-|. +-|. .+. .+.+..++.++.++++..
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~---~RL~-------------~~~~~~~~~~~~~~~~~~v~~t 64 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDE---ERLE-------------IVERLARRMVEEAGADLKVEAT 64 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCH---HHHH-------------HHHHHHHHHHHHCTTSSEEEEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCH---HHHH-------------HHHHHHHHHHHhcCCCeEEEEe
Confidence 68999999864 334444442 2446899998443 1111 122 233456667888888765
Q ss_pred ecChhhhhcCCcCCCCCCcEEEEcCCChH--HHHHHHHHHHHcCCeEEEEeeccceee
Q 012768 95 EEYPEALIEMNPPFFSQFTLVVATQLGEE--KMIKLDRICREANVMLIFARSYGLTGF 150 (456)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~dvVi~~~~~~~--~~~~l~~~~~~~~ip~i~~~~~G~~G~ 150 (456)
... .+-++++|+||.+..... .+..=.+++.++|+.-....+.|..|.
T Consensus 65 td~--------~eAl~gADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~ 114 (183)
T PF02056_consen 65 TDR--------REALEGADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGF 114 (183)
T ss_dssp SSH--------HHHHTTESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHH
T ss_pred CCH--------HHHhCCCCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHH
Confidence 432 223568999998764322 233223466777775444555565553
No 469
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=75.40 E-value=19 Score=33.06 Aligned_cols=79 Identities=14% Similarity=0.213 Sum_probs=40.9
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHcC-CCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768 18 EKASVCLLNCGPTGSETLKNLVLGG-IGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE 96 (456)
Q Consensus 18 ~~~~VlIiG~gglG~eiaknLvl~G-v~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~ 96 (456)
...+|+-+|||. |.-.+..+-+.| -++++-+|.+. ...+.++++++..+-.-.+..+..
T Consensus 40 ~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~-------------------~~~~~a~~n~~~~g~~~~v~~~~~ 99 (198)
T PRK00377 40 KGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDE-------------------KAINLTRRNAEKFGVLNNIVLIKG 99 (198)
T ss_pred CcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCH-------------------HHHHHHHHHHHHhCCCCCeEEEEe
Confidence 457899999976 544333333333 36888888332 244555566665541112333333
Q ss_pred ChhhhhcCCcCCCCCCcEEEEcC
Q 012768 97 YPEALIEMNPPFFSQFTLVVATQ 119 (456)
Q Consensus 97 ~~~~~~~~~~~~~~~~dvVi~~~ 119 (456)
+...... ..-..||.|++..
T Consensus 100 d~~~~l~---~~~~~~D~V~~~~ 119 (198)
T PRK00377 100 EAPEILF---TINEKFDRIFIGG 119 (198)
T ss_pred chhhhHh---hcCCCCCEEEECC
Confidence 3222111 1113699999754
No 470
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=75.40 E-value=11 Score=34.05 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=26.0
Q ss_pred cEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768 21 SVCLLN-CGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 21 ~VlIiG-~gglG~eiaknLvl~Gv~~itlvD 50 (456)
.++|.| .|++|..+++.|+..|..+|.++-
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~ 32 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLG 32 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEE
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEec
Confidence 578886 999999999999999999999874
No 471
>PRK07774 short chain dehydrogenase; Provisional
Probab=75.38 E-value=3.1 Score=39.18 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=28.4
Q ss_pred HHhcCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEe
Q 012768 16 ALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 16 ~L~~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD 50 (456)
.+++++|+|.|+ |++|..+++.|+..|. ++.++|
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~ 37 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGA-SVVVAD 37 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEe
Confidence 356788999995 9999999999999996 577765
No 472
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=75.37 E-value=3.8 Score=46.76 Aligned_cols=37 Identities=27% Similarity=0.417 Sum_probs=32.8
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCccc
Q 012768 18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVE 55 (456)
Q Consensus 18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~ 55 (456)
...+|+|||+|+.|-++|..|++.|.. +|++|...++
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~-Vtv~E~~~i~ 418 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHN-VTAIDGLKIT 418 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCe-EEEEcccccc
Confidence 577999999999999999999999975 9999976554
No 473
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.36 E-value=3.7 Score=38.29 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=27.9
Q ss_pred HhcCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEe
Q 012768 17 LEKASVCLLNC-GPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 17 L~~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD 50 (456)
|++++|+|.|+ |++|..+++.|...|. ++.+++
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~ 36 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINS 36 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEe
Confidence 56789999985 7799999999999998 566665
No 474
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=75.35 E-value=16 Score=35.46 Aligned_cols=31 Identities=23% Similarity=0.428 Sum_probs=26.4
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCC---CcEEEEe
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGI---GSITVID 50 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv---~~itlvD 50 (456)
.+|.+||+|..|..++.-|...|. .+|.+.|
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~ 35 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTN 35 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeC
Confidence 479999999999999999999994 4566654
No 475
>PLN02503 fatty acyl-CoA reductase 2
Probab=75.29 E-value=8.4 Score=41.98 Aligned_cols=41 Identities=12% Similarity=0.152 Sum_probs=33.0
Q ss_pred CHHHHHHHhcCcEEEEcC-ChhHHHHHHHHHHc--CCCcEEEEe
Q 012768 10 GEQGQAALEKASVCLLNC-GPTGSETLKNLVLG--GIGSITVID 50 (456)
Q Consensus 10 G~~~q~~L~~~~VlIiG~-gglG~eiaknLvl~--Gv~~itlvD 50 (456)
|..-++-+++++|+|-|+ |-+|..+++.|++. .+++|.++.
T Consensus 110 ~~~I~~f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~Lv 153 (605)
T PLN02503 110 GIGIAEFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLI 153 (605)
T ss_pred CcchhhhhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 344567889999999996 66999999999975 467888864
No 476
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=75.23 E-value=3.2 Score=42.42 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=29.2
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCCc
Q 012768 20 ASVCLLNCGPTGSETLKNLVLGGIG-SITVIDGSK 53 (456)
Q Consensus 20 ~~VlIiG~gglG~eiaknLvl~Gv~-~itlvD~d~ 53 (456)
..|+|||+|..|..+|-.|.+.|.+ +++|+|...
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~ 36 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAP 36 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence 4699999999999999999999743 689999654
No 477
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=75.22 E-value=3.5 Score=42.70 Aligned_cols=36 Identities=11% Similarity=0.103 Sum_probs=31.9
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 15 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
..|..++|.|+|+|.+|..+|+.+.-.|. ++..+|.
T Consensus 147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm-~V~~~d~ 182 (409)
T PRK11790 147 FEVRGKTLGIVGYGHIGTQLSVLAESLGM-RVYFYDI 182 (409)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECC
Confidence 46999999999999999999999999998 5777774
No 478
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=75.21 E-value=3.5 Score=42.83 Aligned_cols=34 Identities=12% Similarity=0.133 Sum_probs=29.7
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
-.+|.|||+|-+|..+|.+|+..|. +++.+|.+.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~ 36 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQ 36 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCH
Confidence 3689999999999999999999994 688888644
No 479
>PRK06996 hypothetical protein; Provisional
Probab=75.16 E-value=3.5 Score=42.30 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=30.6
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCC---CcEEEEeCCc
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGI---GSITVIDGSK 53 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv---~~itlvD~d~ 53 (456)
...|+|||+|..|..+|-.|.+.|+ -+++|+|...
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 3579999999999999999999996 3699999764
No 480
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=75.14 E-value=10 Score=37.68 Aligned_cols=74 Identities=16% Similarity=0.205 Sum_probs=46.1
Q ss_pred cCcEEEEcCChhHHHHHHHHHH-cCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecC
Q 012768 19 KASVCLLNCGPTGSETLKNLVL-GGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY 97 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl-~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~ 97 (456)
..++.|+|+|.-|..-++.+.. .+++++.++|.+ ..+++..++.+++ . .+.+.... +
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~-------------------~~~~~~~~~~~~~-~-~~~v~~~~-~ 185 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRS-------------------PERAEAFAARLRD-L-GVPVVAVD-S 185 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SS-------------------HHHHHHHHHHHHC-C-CTCEEEES-S
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccC-------------------hhHHHHHHHhhcc-c-cccceecc-c
Confidence 3579999999999888887753 569999999722 3478888888888 3 66666553 2
Q ss_pred hhhhhcCCcCCCCCCcEEEEcCCC
Q 012768 98 PEALIEMNPPFFSQFTLVVATQLG 121 (456)
Q Consensus 98 ~~~~~~~~~~~~~~~dvVi~~~~~ 121 (456)
++ +.+++.|+||.|+.+
T Consensus 186 ~~-------~av~~aDii~taT~s 202 (313)
T PF02423_consen 186 AE-------EAVRGADIIVTATPS 202 (313)
T ss_dssp HH-------HHHTTSSEEEE----
T ss_pred hh-------hhcccCCEEEEccCC
Confidence 22 235689999977654
No 481
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=75.07 E-value=3.9 Score=43.91 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=30.6
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
....|+|||+|..|..+|..|.+.|+ +++|+|...
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~-~v~v~Er~~ 43 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGV-RVLVLERWP 43 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence 45789999999999999999999998 588888653
No 482
>PRK07060 short chain dehydrogenase; Provisional
Probab=75.02 E-value=4.1 Score=38.13 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=28.7
Q ss_pred HhcCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEe
Q 012768 17 LEKASVCLLNC-GPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 17 L~~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD 50 (456)
+++.+++|.|+ |++|..+++.|+..|. ++.+++
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~ 40 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRGA-RVVAAA 40 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEe
Confidence 56789999996 7999999999999997 577776
No 483
>PRK13529 malate dehydrogenase; Provisional
Probab=74.95 E-value=3.4 Score=44.16 Aligned_cols=40 Identities=18% Similarity=0.400 Sum_probs=35.1
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHH----cCC------CcEEEEeCCcc
Q 012768 15 AALEKASVCLLNCGPTGSETLKNLVL----GGI------GSITVIDGSKV 54 (456)
Q Consensus 15 ~~L~~~~VlIiG~gglG~eiaknLvl----~Gv------~~itlvD~d~v 54 (456)
.+|++.+|+++|+|+.|.-||+.|+. .|+ ++|.++|.+-+
T Consensus 291 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GL 340 (563)
T PRK13529 291 EPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGL 340 (563)
T ss_pred CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCe
Confidence 47889999999999999999999987 699 69999997643
No 484
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=74.76 E-value=3.7 Score=41.12 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=28.5
Q ss_pred CcEEEEcC-ChhHHHHHHHHHHcCCC------cEEEEeC
Q 012768 20 ASVCLLNC-GPTGSETLKNLVLGGIG------SITVIDG 51 (456)
Q Consensus 20 ~~VlIiG~-gglG~eiaknLvl~Gv~------~itlvD~ 51 (456)
.+|+|+|+ |.+|+.++..|+..|+- .+.++|-
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~ 41 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDI 41 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEc
Confidence 47999998 99999999999998875 7999985
No 485
>PRK06949 short chain dehydrogenase; Provisional
Probab=74.76 E-value=4.2 Score=38.51 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=28.3
Q ss_pred HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768 17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD 50 (456)
+.+.+|+|.| .|++|..+++.|+..|. ++++++
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~ 40 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLAS 40 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe
Confidence 5678999998 58999999999999998 477665
No 486
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=74.63 E-value=4.2 Score=36.30 Aligned_cols=32 Identities=22% Similarity=0.390 Sum_probs=26.8
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEE
Q 012768 17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVI 49 (456)
Q Consensus 17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlv 49 (456)
|++++|.|+|.|+-|-..|.||--+|+ ++++-
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~-~V~Vg 33 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGV-NVIVG 33 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC--EEEEE
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCC-CEEEE
Confidence 688999999999999999999999999 45554
No 487
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=74.62 E-value=3.8 Score=42.61 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=30.0
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
...|+|||+|+.|+.+|..|++.|. +++|+|...
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~-~V~llEr~~ 38 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGA-QVLVIERGN 38 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCC-eEEEEEcCC
Confidence 3689999999999999999999998 588888543
No 488
>PLN02858 fructose-bisphosphate aldolase
Probab=74.54 E-value=4 Score=48.79 Aligned_cols=128 Identities=12% Similarity=0.102 Sum_probs=74.4
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecCh
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP 98 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~ 98 (456)
..+|.+||+|..|..+|+||+..|. .++++|.+.-....+. +.|-..+...++..+ +.++-+..+....
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~-~v~v~dr~~~~~~~l~--------~~Ga~~~~s~~e~a~--~advVi~~l~~~~ 72 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGF-KVQAFEISTPLMEKFC--------ELGGHRCDSPAEAAK--DAAALVVVLSHPD 72 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHH--------HcCCeecCCHHHHHh--cCCEEEEEcCChH
Confidence 5689999999999999999999995 4788874422111111 123222322222222 2233333332110
Q ss_pred --hhhhc--CC-cCCCCCCcEEEE-cCCChHHHHHHHHHHHHcC--CeEEEEeeccc-----eeeEEeeeCC
Q 012768 99 --EALIE--MN-PPFFSQFTLVVA-TQLGEEKMIKLDRICREAN--VMLIFARSYGL-----TGFVRISVKE 157 (456)
Q Consensus 99 --~~~~~--~~-~~~~~~~dvVi~-~~~~~~~~~~l~~~~~~~~--ip~i~~~~~G~-----~G~v~~~~~~ 157 (456)
..+.. .. ...+..=.+||. ++.+......+.+.+.+.+ +.|+.+-+.|. .|.+.+..++
T Consensus 73 ~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG 144 (1378)
T PLN02858 73 QVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASG 144 (1378)
T ss_pred HHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcC
Confidence 11110 00 111223356664 4566677888999999999 88999988875 4777776665
No 489
>PRK06701 short chain dehydrogenase; Provisional
Probab=74.52 E-value=3.6 Score=40.23 Aligned_cols=36 Identities=11% Similarity=0.114 Sum_probs=29.9
Q ss_pred HHHHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768 14 QAALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 14 q~~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD 50 (456)
...+++++|+|.| .|++|..+++.|+..|.. +++++
T Consensus 41 ~~~~~~k~iLItGasggIG~~la~~l~~~G~~-V~l~~ 77 (290)
T PRK06701 41 SGKLKGKVALITGGDSGIGRAVAVLFAKEGAD-IAIVY 77 (290)
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEe
Confidence 3567788999998 588999999999999974 66664
No 490
>KOG2774 consensus NAD dependent epimerase [General function prediction only]
Probab=74.43 E-value=14 Score=35.06 Aligned_cols=136 Identities=13% Similarity=0.138 Sum_probs=72.6
Q ss_pred hcCcEEEEc-CChhHHHHHHHHH-HcCCCcEEEEeCCcccccCC--CccccccccccCcchHHHHHHHHHHhCCCCEEEE
Q 012768 18 EKASVCLLN-CGPTGSETLKNLV-LGGIGSITVIDGSKVEVGDL--GNNFMLDESCVGESKAKSVCAFLQELNDAVKAKF 93 (456)
Q Consensus 18 ~~~~VlIiG-~gglG~eiaknLv-l~Gv~~itlvD~d~v~~~nl--~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~ 93 (456)
+.-+|+|-| +|-+|.++|+-|- +-|-.++.+- |.+.+.+- ....++- .|+=.. +.|+++--+-++.+
T Consensus 43 ~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILS--DI~KPp~~V~~~GPyIy-~DILD~------K~L~eIVVn~RIdW 113 (366)
T KOG2774|consen 43 KAPRVLITGSLGQLGRGLASLLRYMYGSECVILS--DIVKPPANVTDVGPYIY-LDILDQ------KSLEEIVVNKRIDW 113 (366)
T ss_pred CCCeEEEecchHHHhHHHHHHHHHHhCCccEehh--hccCCchhhcccCCchh-hhhhcc------ccHHHhhcccccce
Confidence 456899997 7999999998764 3455555554 45554422 1121211 122111 23444432333332
Q ss_pred EecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCCceeEecCCCCCCCCcc
Q 012768 94 IEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLR 173 (456)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~~~~~~~~~~~~~dlr 173 (456)
.- +...+.. .+...++=++-.-+......+-+.+.+++..++.-++.|.+|- +.|.+..||++
T Consensus 114 L~-HfSALLS----AvGE~NVpLA~~VNI~GvHNil~vAa~~kL~iFVPSTIGAFGP------------tSPRNPTPdlt 176 (366)
T KOG2774|consen 114 LV-HFSALLS----AVGETNVPLALQVNIRGVHNILQVAAKHKLKVFVPSTIGAFGP------------TSPRNPTPDLT 176 (366)
T ss_pred ee-eHHHHHH----HhcccCCceeeeecchhhhHHHHHHHHcCeeEeecccccccCC------------CCCCCCCCCee
Confidence 22 1111111 1112223233333444556677888899998888888898882 22445568888
Q ss_pred cCCCCc
Q 012768 174 LNNPWP 179 (456)
Q Consensus 174 l~~p~p 179 (456)
+.+|-.
T Consensus 177 IQRPRT 182 (366)
T KOG2774|consen 177 IQRPRT 182 (366)
T ss_pred eecCce
Confidence 888754
No 491
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=74.40 E-value=6 Score=40.57 Aligned_cols=32 Identities=25% Similarity=0.308 Sum_probs=28.8
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
..+|+|+|.|.+|.|+|..|...|. ++|+++.
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~-~Vtlv~~ 175 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRC-KVTVIEL 175 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEec
Confidence 4789999999999999999999998 5999874
No 492
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=74.34 E-value=4 Score=43.56 Aligned_cols=39 Identities=15% Similarity=0.296 Sum_probs=34.7
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHH----HcCC------CcEEEEeCCc
Q 012768 15 AALEKASVCLLNCGPTGSETLKNLV----LGGI------GSITVIDGSK 53 (456)
Q Consensus 15 ~~L~~~~VlIiG~gglG~eiaknLv----l~Gv------~~itlvD~d~ 53 (456)
.+|++.+|+++|+|+.|.-||+.|+ ..|+ ++|.++|.+-
T Consensus 293 ~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~G 341 (559)
T PTZ00317 293 VPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKG 341 (559)
T ss_pred CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCC
Confidence 4688999999999999999999988 4899 8999999764
No 493
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=74.30 E-value=4.3 Score=39.09 Aligned_cols=35 Identities=20% Similarity=0.365 Sum_probs=29.3
Q ss_pred HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
.+++.+++|.| .|++|.++++.|+..|. ++.++|.
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r 42 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGA-KVAILDR 42 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 36678899998 58999999999999998 5777763
No 494
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=74.30 E-value=5.6 Score=38.37 Aligned_cols=36 Identities=19% Similarity=0.416 Sum_probs=30.6
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768 16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 52 (456)
Q Consensus 16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d 52 (456)
......|+|||+|+.|...|..|+..|.+ ++|+|..
T Consensus 22 ~~~~~DVvIVGgGpAGl~AA~~la~~G~~-V~liEk~ 57 (257)
T PRK04176 22 DYLEVDVAIVGAGPSGLTAAYYLAKAGLK-VAVFERK 57 (257)
T ss_pred HhccCCEEEECccHHHHHHHHHHHhCCCe-EEEEecC
Confidence 34457899999999999999999999985 8888754
No 495
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=74.25 E-value=23 Score=29.51 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=21.7
Q ss_pred cEEEEcC-ChhHHHHHHHHHHc-CCCcEEEEe
Q 012768 21 SVCLLNC-GPTGSETLKNLVLG-GIGSITVID 50 (456)
Q Consensus 21 ~VlIiG~-gglG~eiaknLvl~-Gv~~itlvD 50 (456)
+|.|+|+ |-+|..+++.|... ++.-..+++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~ 32 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAA 32 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEe
Confidence 5899996 66888999999984 665333333
No 496
>PRK05876 short chain dehydrogenase; Provisional
Probab=74.24 E-value=3.2 Score=40.21 Aligned_cols=33 Identities=12% Similarity=0.136 Sum_probs=28.1
Q ss_pred HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768 17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID 50 (456)
Q Consensus 17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD 50 (456)
+.+++|+|.| .||+|.++++.|+..|.. +.++|
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~-Vv~~~ 37 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGAR-VVLGD 37 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEe
Confidence 5677899998 789999999999999984 77765
No 497
>PRK09072 short chain dehydrogenase; Provisional
Probab=74.21 E-value=3.9 Score=39.02 Aligned_cols=34 Identities=21% Similarity=0.338 Sum_probs=28.8
Q ss_pred HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
|++.+|+|.| .|++|.++++.|+..|. ++++++.
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r 37 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGR 37 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEC
Confidence 4677899998 68899999999999996 4888763
No 498
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=74.16 E-value=3.6 Score=45.18 Aligned_cols=34 Identities=21% Similarity=0.494 Sum_probs=30.0
Q ss_pred hcCcEEEEcCChhHHHHHHHHHH-cCCCcEEEEeCC
Q 012768 18 EKASVCLLNCGPTGSETLKNLVL-GGIGSITVIDGS 52 (456)
Q Consensus 18 ~~~~VlIiG~gglG~eiaknLvl-~Gv~~itlvD~d 52 (456)
+...|+|||+|+.|..+|-.|++ +|+. ++|+|..
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~-v~IiE~~ 65 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDIT-TRIVERK 65 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCc-EEEEEcC
Confidence 46789999999999999999999 6986 8888854
No 499
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=74.12 E-value=4.3 Score=41.49 Aligned_cols=34 Identities=26% Similarity=0.456 Sum_probs=30.4
Q ss_pred cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768 19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 53 (456)
Q Consensus 19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~ 53 (456)
..+|+|||+|..|..+|..|.+.|+. ++|+|...
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~-v~v~E~~~ 35 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGID-SVVLERRS 35 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCC-EEEEEcCC
Confidence 46799999999999999999999996 88888665
No 500
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=74.03 E-value=4.3 Score=38.47 Aligned_cols=35 Identities=17% Similarity=0.137 Sum_probs=29.9
Q ss_pred HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768 16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG 51 (456)
Q Consensus 16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~ 51 (456)
.++.++|+|.| .|++|..+++.|+..|. ++++++.
T Consensus 8 ~~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r 43 (256)
T PRK06124 8 SLAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGR 43 (256)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeC
Confidence 36788999998 58899999999999997 6888764
Done!