Query 012771
Match_columns 456
No_of_seqs 312 out of 2067
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 15:55:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012771.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012771hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v5u_A Uncharacterized membran 100.0 6E-48 2.1E-52 386.6 29.2 294 103-444 6-303 (320)
2 3v5u_A Uncharacterized membran 99.8 1.5E-19 5.1E-24 180.9 17.4 142 298-445 4-146 (320)
3 2oar_A Large-conductance mecha 20.9 51 0.0017 29.3 2.5 31 356-386 32-69 (174)
4 3arc_L Photosystem II reaction 11.0 3.2E+02 0.011 17.6 3.6 28 195-222 7-34 (37)
5 3o7q_A L-fucose-proton symport 10.0 1E+03 0.035 22.2 9.5 44 297-340 25-68 (438)
6 1lgh_A LH II, B800/850, light 9.3 3.5E+02 0.012 19.3 3.8 24 406-429 27-50 (56)
7 2kdc_A Diacylglycerol kinase; 8.6 5.7E+02 0.02 20.9 5.5 49 83-133 36-84 (121)
8 3llb_A Uncharacterized protein 8.4 1.7E+02 0.0058 22.0 2.0 16 133-148 36-51 (83)
9 3lae_A UPF0053 protein HI0107; 8.3 1.6E+02 0.0055 22.0 1.9 16 133-148 36-51 (81)
10 3hzq_A Large-conductance mecha 8.3 6.3E+02 0.022 20.6 5.5 14 360-373 34-47 (114)
No 1
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=100.00 E-value=6e-48 Score=386.59 Aligned_cols=294 Identities=18% Similarity=0.195 Sum_probs=245.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--chhHHHHHHHhh-chhHHHHHHHHhhcCCceeeeecchhhHHHHHHHH
Q 012771 103 GWVFFLSLLGITPLAERLGYATEQLTFFTG--ATVGGLLNATFG-NATELIISIYALKSGMIRVVQLSLLGSILSNMLLV 179 (456)
Q Consensus 103 ~~vF~~~~laiipla~~l~~~~e~la~~~g--~~vgGll~at~G-n~pELivsi~Al~~g~~~iv~gsilGSil~nllLv 179 (456)
...|+.++++++++++++++++|++|+++| |.+.|++++++| |+||+++++.|..+|++|+++||++|||++|++++
T Consensus 6 ~~~l~~g~~~l~~~a~~lv~~~~~la~~lgis~~viGltiva~GTSlPEl~vsi~A~~~g~~diaiGnivGSni~nillv 85 (320)
T 3v5u_A 6 VGYFLLGLILLYYGSDWFVLGSERIARHFNVSNFVIGATVMAIGTSLPEILTSAYASYMHAPGISIGNAIGSCICNIGLV 85 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTBCHHHHHHTHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHcccHHHHHHHHHHhCCCCceeeeeecchHHHHHHHH
Confidence 456889999999999999999999999997 999999999999 69999999999999999999999999999999999
Q ss_pred HHHHHHhccceeecceeEeehhhhHHHHHHHHHHHHHHHHHHHHhhhccccccCccccccchhhHHHHHHHHHHHHHHHH
Q 012771 180 LGCAFFCGGLICCKKEQVFNKASAVVNSGLLLMAVMGLVFPAVLHYTHTEVHFGKSELALSRFSSCIMLVAYGAYLFFQL 259 (456)
Q Consensus 180 lG~~~l~gg~~~~~~~q~f~~~~a~~~s~lllla~~~lllp~~~~~~~~~~~~~~~~~~lSr~~siiLL~~Y~~yl~f~l 259 (456)
+|+|+++++++. ++.+.++ ..+++++++. +++ +. .++ ++|++|++|+.+|+.|++|++
T Consensus 86 lG~~~li~p~~v---~~~~~~d-----~~~~l~~~~~-l~~--~~----------~~g-is~~~g~~Ll~~Y~~yl~~~~ 143 (320)
T 3v5u_A 86 LGLSAIISPIIV---DKNLQKN-----ILVYLLFVIF-AAV--IG----------IDG-FSWIDGVVLLILFIIYLRWTV 143 (320)
T ss_dssp HHHHHHHSCBCC---CHHHHHH-----HHHHHHHHHH-HHH--HT----------TTC-BCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccccc---cHHHHHH-----HHHHHHHHHH-HHH--HH----------Hcc-cHHHHHHHHHHHHHHHHHHHH
Confidence 999999999764 2223333 3334443322 222 11 124 999999999999999999999
Q ss_pred HhccccccCcccccccCCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhhhHhH
Q 012771 260 RGQTELYVPLSEDENQTGNDADHGGNHDDNEAPEISKWESLIWLAIMTAWISILSQYVVDAIEGASASWNIPISFISVIL 339 (456)
Q Consensus 260 ~th~~~f~~~~e~~~~~~~~~~~~~~~~~~e~~~~s~~~ai~~L~~~~~li~~~a~~lV~si~~i~~~~gis~~fiGlil 339 (456)
++|++. + | +++++++.+.++.+.+++++++++..+++++|++++.+++.+|+|+.++|+|+
T Consensus 144 ~~~~~~-----~------------~--~~~~~~~~~~~~~~~~l~~~l~~l~~~a~~lv~~~~~ia~~~gis~~~iGltl 204 (320)
T 3v5u_A 144 KNGSAE-----I------------E--ENNDKNNPSVVFSLVLLIIGLIGVLVGAELFVDGAKKIALALDISDKVIGFTL 204 (320)
T ss_dssp HHTBC--------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHT
T ss_pred Hhcccc-----c------------c--cccccccccHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHhCCchHHHHHHH
Confidence 988741 1 1 11122356778899999999999999999999999999999999999999999
Q ss_pred HHHhhchhHHHHHHHHHHhCCccchHHHhhhHHHHHHHHHHHHHHHHHhhcCCcccccchhHHHHHHHHHHHHHHHHHhC
Q 012771 340 LPIVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVIGWIMGRPMDLNFQLFETATLFITVIVVAFFLQE 419 (456)
Q Consensus 340 lpi~ts~pE~~~ai~~a~kg~~dlaig~~iGS~i~~~l~v~p~~vli~~~~g~~~~l~f~~~~~~~l~lsvll~~~~~~~ 419 (456)
+|++||+||+++++.+++||+.|+|+|+++|||+||.++++|+..++ .|++++ .+|...++...+++..+++|
T Consensus 205 va~gtslPE~~~sv~aa~~g~~~laig~iiGS~ifn~~~v~g~~~li-----~p~~~~--~~d~~~~l~~~~ll~~~~~~ 277 (320)
T 3v5u_A 205 VAFGTSLPELMVSLAAAKRNLGGMVLGNVIGSNIADIGGALAVGSLF-----MHLPAE--NVQMAVLVIMSLLLYLFAKY 277 (320)
T ss_dssp HHHHHTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTHHHHHHHH-----SCBCCC--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHcCCCcHHHHHHHhHHHHHHHHHHHHHHhh-----ccccch--HHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999998887 466654 66764443333333347789
Q ss_pred CccchHHHHHHHHHHHH-HHHHHhhc
Q 012771 420 GTSNYFKGLMLILCYLI-VAASFFVH 444 (456)
Q Consensus 420 g~~~~~~G~~Ll~~Y~i-~~~~~~~~ 444 (456)
||++|+||.+|+++|++ |....+..
T Consensus 278 ~~i~~~eG~~ll~~Y~~~y~~~~~~~ 303 (320)
T 3v5u_A 278 SKIGRWQGILFLALYIIAIASLRMGG 303 (320)
T ss_dssp SCBSHHHHHHHHHHHHHHHHHSCSSC
T ss_pred CcCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999 99887653
No 2
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=99.82 E-value=1.5e-19 Score=180.85 Aligned_cols=142 Identities=16% Similarity=0.190 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhhhHhHHHHhhchhHHHHHHHHHHhCCccchHHHhhhHHHHHHH
Q 012771 298 ESLIWLAIMTAWISILSQYVVDAIEGASASWNIPISFISVILLPIVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISM 377 (456)
Q Consensus 298 ~ai~~L~~~~~li~~~a~~lV~si~~i~~~~gis~~fiGlillpi~ts~pE~~~ai~~a~kg~~dlaig~~iGS~i~~~l 377 (456)
..+.+++++++++..++++++++.+.+++++|+|+.++|+|++|+|||+||+++++.++++|+.|+++||++|||++|++
T Consensus 4 ~~~~~l~~g~~~l~~~a~~lv~~~~~la~~lgis~~viGltiva~GTSlPEl~vsi~A~~~g~~diaiGnivGSni~nil 83 (320)
T 3v5u_A 4 LGVGYFLLGLILLYYGSDWFVLGSERIARHFNVSNFVIGATVMAIGTSLPEILTSAYASYMHAPGISIGNAIGSCICNIG 83 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTBCHHHHHHTHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHcccHHHHHHHHHHhCCCCceeeeeecchHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcccccch-hHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHhhcc
Q 012771 378 FGIPFCVVIGWIMGRPMDLNFQ-LFETATLFITVIVVAFFLQEGTSNYFKGLMLILCYLIVAASFFVHE 445 (456)
Q Consensus 378 ~v~p~~vli~~~~g~~~~l~f~-~~~~~~l~lsvll~~~~~~~g~~~~~~G~~Ll~~Y~i~~~~~~~~~ 445 (456)
+++|++.+++ |+..+.. ..+...++++.++...+..|| .+|++|.+|+++|++|..+.+...
T Consensus 84 lvlG~~~li~-----p~~v~~~~~~d~~~~l~~~~~l~~~~~~g-is~~~g~~Ll~~Y~~yl~~~~~~~ 146 (320)
T 3v5u_A 84 LVLGLSAIIS-----PIIVDKNLQKNILVYLLFVIFAAVIGIDG-FSWIDGVVLLILFIIYLRWTVKNG 146 (320)
T ss_dssp THHHHHHHHS-----CBCCCHHHHHHHHHHHHHHHHHHHHTTTC-BCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHc-----cccccHHHHHHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999884 4443222 234444444444444556788 999999999999999999887654
No 3
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=20.90 E-value=51 Score=29.29 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=20.5
Q ss_pred HHhCC-ccchHHHhhhHHHH---HHH---HHHHHHHHH
Q 012771 356 AMKDK-LDISLGVAIGSSTQ---ISM---FGIPFCVVI 386 (456)
Q Consensus 356 a~kg~-~dlaig~~iGS~i~---~~l---~v~p~~vli 386 (456)
+.||+ +|+|+|++||++.. +.+ ++.|++.++
T Consensus 32 i~RGNViDLAVgVIIGaAF~~IVtSlV~dIImPlIgl~ 69 (174)
T 2oar_A 32 LARGNIVDLAVAVVIGTAFTALVTKFTDSIITPLINRI 69 (174)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 45554 69999999999752 222 467775544
No 4
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=10.97 E-value=3.2e+02 Score=17.64 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=16.6
Q ss_pred eeEeehhhhHHHHHHHHHHHHHHHHHHH
Q 012771 195 EQVFNKASAVVNSGLLLMAVMGLVFPAV 222 (456)
Q Consensus 195 ~q~f~~~~a~~~s~lllla~~~lllp~~ 222 (456)
+|......++.+-+++++.+++.+++..
T Consensus 7 ~q~VELNRTSLy~GLLlifvlavlFssy 34 (37)
T 3arc_L 7 RQPVELNRTSLYLGLLLILVLALLFSSY 34 (37)
T ss_dssp CCCBCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcceechhhHHHHHHHHHHHHHHhhhh
Confidence 3434444455666777777777666543
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=9.96 E-value=1e+03 Score=22.16 Aligned_cols=44 Identities=5% Similarity=-0.073 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhhhHhHH
Q 012771 297 WESLIWLAIMTAWISILSQYVVDAIEGASASWNIPISFISVILL 340 (456)
Q Consensus 297 ~~ai~~L~~~~~li~~~a~~lV~si~~i~~~~gis~~fiGlill 340 (456)
+..+..+.....+..............+.+.+|++..-+|++..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~ 68 (438)
T 3o7q_A 25 IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQS 68 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33333333333333333344445566788899999999988654
No 6
>1lgh_A LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=9.26 E-value=3.5e+02 Score=19.28 Aligned_cols=24 Identities=17% Similarity=0.054 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhCCccchHHHHH
Q 012771 406 LFITVIVVAFFLQEGTSNYFKGLM 429 (456)
Q Consensus 406 l~lsvll~~~~~~~g~~~~~~G~~ 429 (456)
..+++++-..++...+.||++|.-
T Consensus 27 ~vlAllIH~~lLs~~~fnWl~g~a 50 (56)
T 1lgh_A 27 TVVAIAVHAAVLAAPGFNWIALGA 50 (56)
T ss_dssp HHHHHHHHHHHHHSGGGCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcchhcchh
Confidence 344555555567888899999864
No 7
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK, cell inner membrane, cell membrane, membrane, phospholipid biosynthesis; NMR {Escherichia coli}
Probab=8.58 E-value=5.7e+02 Score=20.91 Aligned_cols=49 Identities=16% Similarity=0.059 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012771 83 NLLMPFGPLAIMVHNLTGHKGWVFFLSLLGITPLAERLGYATEQLTFFTGA 133 (456)
Q Consensus 83 n~Ll~~vP~~~~~~~~~~~~~~vF~~~~laiipla~~l~~~~e~la~~~g~ 133 (456)
-...+.+|+++.++... .-|.+.+..+.++-.+|.+-.+.|.+.++.++
T Consensus 36 ~~~~~~i~~~~~l~~s~--~e~~~li~~i~lVl~~EllNTAIE~vvD~v~~ 84 (121)
T 2kdc_A 36 VAVLLAVVIACWLDVDA--ITRVLLISSVMLVMIVEILNSAIEAVVDRIGS 84 (121)
T ss_dssp HHHHHHHHHHHHCCCCC--SHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34445555555443322 24566666777888899999999999988863
No 8
>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0
Probab=8.39 E-value=1.7e+02 Score=22.00 Aligned_cols=16 Identities=44% Similarity=0.812 Sum_probs=14.5
Q ss_pred chhHHHHHHHhhchhH
Q 012771 133 ATVGGLLNATFGNATE 148 (456)
Q Consensus 133 ~~vgGll~at~Gn~pE 148 (456)
+|+||++..-+|..|+
T Consensus 36 ~Tl~G~i~~~lg~iP~ 51 (83)
T 3llb_A 36 DTVGGLVMSAFGHLPK 51 (83)
T ss_dssp SBHHHHHHHHHSSCCC
T ss_pred cCHHHHHHHHhCcCCC
Confidence 6999999999998886
No 9
>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*
Probab=8.32 E-value=1.6e+02 Score=22.01 Aligned_cols=16 Identities=19% Similarity=0.347 Sum_probs=14.5
Q ss_pred chhHHHHHHHhhchhH
Q 012771 133 ATVGGLLNATFGNATE 148 (456)
Q Consensus 133 ~~vgGll~at~Gn~pE 148 (456)
+|+||++..-+|..|+
T Consensus 36 ~Tl~G~i~~~lg~iP~ 51 (81)
T 3lae_A 36 RTFNGLILEHLEEIPD 51 (81)
T ss_dssp SBHHHHHHHHCSSCCC
T ss_pred ccHHHHHHHHhCCCCC
Confidence 6999999999998886
No 10
>3hzq_A Large-conductance mechanosensitive channel; intermediate state mechanosensitive channel osmoregulation, cell membrane, ION transport; 3.82A {Staphylococcus aureus subsp}
Probab=8.32 E-value=6.3e+02 Score=20.62 Aligned_cols=14 Identities=29% Similarity=0.638 Sum_probs=11.9
Q ss_pred CccchHHHhhhHHH
Q 012771 360 KLDISLGVAIGSST 373 (456)
Q Consensus 360 ~~dlaig~~iGS~i 373 (456)
-+|+|+|.++|++.
T Consensus 34 ViDLAVgVIIG~AF 47 (114)
T 3hzq_A 34 VLDLAIAVVMGAAF 47 (114)
T ss_dssp THHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 46999999999975
Done!