BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012772
(456 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Cofactor Product Adohcy
pdb|3QWW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Methyltransferase Inhibitor
Sinefungin
Length = 433
Score = 131 bits (329), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 117/458 (25%), Positives = 206/458 (44%), Gaps = 73/458 (15%)
Query: 4 FHVSGEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKL 62
FHV G+++ S Y CV C+ CFA L KC C+ +YC CQK DW L
Sbjct: 27 FHV-GDLLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPL 85
Query: 63 HRLECQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVARIL 122
H+LEC + L +N PS T L ARIL
Sbjct: 86 HKLECSSMVVL-------------------------GENWNPSETV-------RLTARIL 113
Query: 123 FELIIWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDID-EKQLLLYAQIANLVNLI--- 178
+ I + + ++ L+ F + +D EK+ L+ + IA L
Sbjct: 114 AKQKIHPER-------TPSEKLLAV---REFESHLDKLDNEKKDLIQSDIAALHQFYSKY 163
Query: 179 LQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRL 238
L++P+ S + F+++ CN TI + EL LG+ ++P ++++NHSC PN ++ ++G L
Sbjct: 164 LEFPDHS--SLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTL 221
Query: 239 AVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLV--- 295
A VRAVQ + G D++ S I Y +D LRDS C++C
Sbjct: 222 AEVRAVQEIHPG-----DEVFTSYIDLLYPTED---RNDRLRDSYFFTCECRECTTKDKD 273
Query: 296 RSKEEIKKIASEVNILSKKTLA---------LTSCGNHQEVVSTYKMIEKLQKKLYHPF- 345
++K E++K++S + + + +++ ++ E Q+K+ F
Sbjct: 274 KAKVEVRKLSSPPQAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFE 333
Query: 346 --SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEW 403
+V ++ + + + + ++DW+ AL Y Q I Y + YP + + + G+L
Sbjct: 334 DSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYM 393
Query: 404 FLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 441
L + K++ +A+ I+ + HG + P++ E+ ++E
Sbjct: 394 GLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431
>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7D|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7F|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7J|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
Length = 433
Score = 121 bits (303), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 111/452 (24%), Positives = 200/452 (44%), Gaps = 68/452 (15%)
Query: 8 GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
G+++ S Y V + + C+ CF L KC C+ +YC CQK DW +H+LE
Sbjct: 30 GDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPMHKLE 89
Query: 67 CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVARILFELI 126
C +P + +N PS T L ARIL +
Sbjct: 90 C--------------SPMVVF-----------GENWNPSETV-------RLTARILAKQK 117
Query: 127 IWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDID-EKQLLLYAQIANLVNLILQWPEIS 185
I + + ++ L+ F + +D EK+ L+ + IA L + + E
Sbjct: 118 IHPER-------TPSEKLLAV---KEFESHLDKLDNEKKDLIQSDIAALHHFYSKHLEFP 167
Query: 186 INE-IAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAV 244
N+ + F+++ CN TI + EL LG+ ++P ++++NHSC PN ++ ++G LA VRAV
Sbjct: 168 DNDSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAV 227
Query: 245 QHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLV---RSKEEI 301
Q + G E + S I Y +D LRDS CQ+C ++K EI
Sbjct: 228 QEIKPGEE-----VFTSYIDLLYPTED---RNDRLRDSYFFTCECQECTTKDKDKAKVEI 279
Query: 302 KKIASEVNILSKKTLA---------LTSCGNHQEVVSTYKMIEKLQKKLYHPF---SVNL 349
+K++ + + + +++ ++ E Q+K+ F +V +
Sbjct: 280 RKLSDPPKAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYM 339
Query: 350 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTE 409
+ + + + + ++DW+ AL Y Q I Y + YP + + + G+L L
Sbjct: 340 LHMMYQAMGVCLYMQDWEGALQYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEHKA 399
Query: 410 NAIKSMTEAVEILRITHGTNSPFMKELILKLE 441
K++ +A+ I+ + HG + P++ E+ ++E
Sbjct: 400 AGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431
>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam
pdb|3TG5|A Chain A, Structure Of Smyd2 In Complex With P53 And Sah
Length = 433
Score = 118 bits (296), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 111/454 (24%), Positives = 201/454 (44%), Gaps = 72/454 (15%)
Query: 8 GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
G+++ S Y V + + C+ CF L KC C+ +YC CQK DW +H+LE
Sbjct: 30 GDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPMHKLE 89
Query: 67 CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVARILFELI 126
C +P + +N PS T L ARIL +
Sbjct: 90 C--------------SPMVVF-----------GENWNPSETV-------RLTARILAKQK 117
Query: 127 IWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDID-EKQLLLYAQIANLVNLI---LQWP 182
I + + ++ L+ F + +D EK+ L+ + IA L + L +P
Sbjct: 118 IHPER-------TPSEKLLAV---KEFESHLDKLDNEKKDLIQSDIAALHHFYSKHLGFP 167
Query: 183 EISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVR 242
+ + + F+++ CN TI + EL LG+ ++P ++++NHSC PN ++ ++G LA VR
Sbjct: 168 DN--DSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVR 225
Query: 243 AVQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLV---RSKE 299
AVQ + G E + S I Y +D LRDS CQ+C ++K
Sbjct: 226 AVQEIKPGEE-----VFTSYIDLLYPTED---RNDRLRDSYFFTCECQECTTKDKDKAKV 277
Query: 300 EIKKIASEVNILSKKTLA---------LTSCGNHQEVVSTYKMIEKLQKKLYHPF---SV 347
EI+K++ + + + +++ ++ E Q+K+ F +V
Sbjct: 278 EIRKLSDPPKAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNV 337
Query: 348 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGD 407
++ + + + + ++DW+ AL Y Q I Y + YP + + + G+L L
Sbjct: 338 YMLHMMYQAMGVCLYMQDWEGALQYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEH 397
Query: 408 TENAIKSMTEAVEILRITHGTNSPFMKELILKLE 441
K++ +A+ I+ + HG + P++ E+ ++E
Sbjct: 398 KAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431
>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
pdb|3RIB|B Chain B, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
Length = 441
Score = 118 bits (296), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 111/454 (24%), Positives = 201/454 (44%), Gaps = 72/454 (15%)
Query: 8 GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
G+++ S Y V + + C+ CF L KC C+ +YC CQK DW +H+LE
Sbjct: 30 GDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPMHKLE 89
Query: 67 CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVARILFELI 126
C +P + +N PS T L ARIL +
Sbjct: 90 C--------------SPMVVF-----------GENWNPSETV-------RLTARILAKQK 117
Query: 127 IWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDID-EKQLLLYAQIANLVNLI---LQWP 182
I + + ++ L+ F + +D EK+ L+ + IA L + L +P
Sbjct: 118 IHPER-------TPSEKLLAV---KEFESHLDKLDNEKKDLIQSDIAALHHFYSKHLGFP 167
Query: 183 EISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVR 242
+ + + F+++ CN TI + EL LG+ ++P ++++NHSC PN ++ ++G LA VR
Sbjct: 168 DN--DSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVR 225
Query: 243 AVQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLV---RSKE 299
AVQ + G E + S I Y +D LRDS CQ+C ++K
Sbjct: 226 AVQEIKPGEE-----VFTSYIDLLYPTED---RNDRLRDSYFFTCECQECTTKDKDKAKV 277
Query: 300 EIKKIASEVNILSKKTLA---------LTSCGNHQEVVSTYKMIEKLQKKLYHPF---SV 347
EI+K++ + + + +++ ++ E Q+K+ F +V
Sbjct: 278 EIRKLSDPPKAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNV 337
Query: 348 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGD 407
++ + + + + ++DW+ AL Y Q I Y + YP + + + G+L L
Sbjct: 338 YMLHMMYQAMGVCLYMQDWEGALQYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEH 397
Query: 408 TENAIKSMTEAVEILRITHGTNSPFMKELILKLE 441
K++ +A+ I+ + HG + P++ E+ ++E
Sbjct: 398 KAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 115/432 (26%), Positives = 187/432 (43%), Gaps = 65/432 (15%)
Query: 8 GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
GE++ +P S CD C L +CS C+V YC + CQK W H+ E
Sbjct: 27 GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRE 86
Query: 67 CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVARILFELI 126
C+ L KS P P + L+ R++F+L+
Sbjct: 87 CKCL--------KSCKPRYP-----------------PDSVR--------LLGRVVFKLM 113
Query: 127 IWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQ--IANLVNLILQWPEI 184
L Y+ + + +N L + +QL++ Q + + Q P
Sbjct: 114 DGAPSESEKLYSFYD---LESNINKLTEDRKEGL--RQLVMTFQHFMREEIQDASQLP-- 166
Query: 185 SINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAV 244
++ E F+K+ CN+ TICN+E++ +G GLYP IS++NHSC PN +VF G ++RAV
Sbjct: 167 PAFDLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAV 226
Query: 245 QHVPKGAEGQ--FDDI-----QESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRS 297
+ + G E + D+ + L C + C +D D T +
Sbjct: 227 RDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRCQTQDKDADMLTGDEQVWKEV 286
Query: 298 KEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTR--EK 355
+E +KKI E+ K L C Q ++S+ E+L +N+ Q + +
Sbjct: 287 QESLKKI-EELKAHWKWEQVLAMC---QAIISSNS--ERLP-------DINIYQLKVLDC 333
Query: 356 LIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSM 415
+ + L +EAL Y T+ Y+ +P HP+ G+Q GKL+ G A+K++
Sbjct: 334 AMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNL 393
Query: 416 TEAVEILRITHG 427
A +I+R+THG
Sbjct: 394 RLAFDIMRVTHG 405
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 115/432 (26%), Positives = 187/432 (43%), Gaps = 65/432 (15%)
Query: 8 GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
GE++ +P S CD C L +CS C+V YC + CQK W H+ E
Sbjct: 28 GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRE 87
Query: 67 CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVARILFELI 126
C+ L KS P P + L+ R++F+L+
Sbjct: 88 CKCL--------KSCKPRYP-----------------PDSVR--------LLGRVVFKLM 114
Query: 127 IWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQ--IANLVNLILQWPEI 184
L Y+ + + +N L + +QL++ Q + + Q P
Sbjct: 115 DGAPSESEKLYSFYD---LESNINKLTEDRKEGL--RQLVMTFQHFMREEIQDASQLP-- 167
Query: 185 SINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAV 244
++ E F+K+ CN+ TICN+E++ +G GLYP IS++NHSC PN +VF G ++RAV
Sbjct: 168 PAFDLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAV 227
Query: 245 QHVPKGAEGQ--FDDI-----QESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRS 297
+ + G E + D+ + L C + C +D D T +
Sbjct: 228 RDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRCQTQDKDADMLTGDEQVWKEV 287
Query: 298 KEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTR--EK 355
+E +KKI E+ K L C Q ++S+ E+L +N+ Q + +
Sbjct: 288 QESLKKI-EELKAHWKWEQVLAMC---QAIISSNS--ERLP-------DINIYQLKVLDC 334
Query: 356 LIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSM 415
+ + L +EAL Y T+ Y+ +P HP+ G+Q GKL+ G A+K++
Sbjct: 335 AMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNL 394
Query: 416 TEAVEILRITHG 427
A +I+R+THG
Sbjct: 395 RLAFDIMRVTHG 406
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 115/432 (26%), Positives = 187/432 (43%), Gaps = 65/432 (15%)
Query: 8 GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
GE++ +P S CD C L +CS C+V YC + CQK W H+ E
Sbjct: 29 GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRE 88
Query: 67 CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVARILFELI 126
C+ L KS P P + L+ R++F+L+
Sbjct: 89 CKCL--------KSCKPRYP-----------------PDSVR--------LLGRVVFKLM 115
Query: 127 IWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQ--IANLVNLILQWPEI 184
L Y+ + + +N L + +QL++ Q + + Q P
Sbjct: 116 DGAPSESEKLYSFYD---LESNINKLTEDKKEGL--RQLVMTFQHFMREEIQDASQLP-- 168
Query: 185 SINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAV 244
++ E F+K+ CN+ TICN+E++ +G GLYP IS++NHSC PN +VF G ++RAV
Sbjct: 169 PAFDLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAV 228
Query: 245 QHVPKGAEGQ--FDDI-----QESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRS 297
+ + G E + D+ + L C + C +D D T +
Sbjct: 229 RDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRCQTQDKDADMLTGDEQVWKEV 288
Query: 298 KEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTR--EK 355
+E +KKI E+ K L C Q ++S+ E+L +N+ Q + +
Sbjct: 289 QESLKKI-EELKAHWKWEQVLAMC---QAIISSNS--ERLP-------DINIYQLKVLDC 335
Query: 356 LIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSM 415
+ + L +EAL Y T+ Y+ +P HP+ G+Q GKL+ G A+K++
Sbjct: 336 AMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNL 395
Query: 416 TEAVEILRITHG 427
A +I+R+THG
Sbjct: 396 RLAFDIMRVTHG 407
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 115/432 (26%), Positives = 187/432 (43%), Gaps = 65/432 (15%)
Query: 8 GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
GE++ +P S CD C L +CS C+V YC + CQK W H+ E
Sbjct: 27 GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRE 86
Query: 67 CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVARILFELI 126
C+ L KS P P + L+ R++F+L+
Sbjct: 87 CKCL--------KSCKPRYP-----------------PDSVR--------LLGRVVFKLM 113
Query: 127 IWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQ--IANLVNLILQWPEI 184
L Y+ + + +N L + +QL++ Q + + Q P
Sbjct: 114 DGAPSESEKLYSFYD---LESNINKLTEDRKEGL--RQLVMTFQHFMREEIQDASQLP-- 166
Query: 185 SINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAV 244
++ E F+K+ CN+ TICN+E++ +G GLYP IS++NHSC PN +VF G ++RAV
Sbjct: 167 PAFDLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAV 226
Query: 245 QHVPKGAEGQ--FDDI-----QESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRS 297
+ + G E + D+ + L C + C +D D T +
Sbjct: 227 RDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRCQTQDKDADMLTGDEQVWKEV 286
Query: 298 KEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTR--EK 355
+E +KKI E+ K L C Q ++S+ E+L +N+ Q + +
Sbjct: 287 QESLKKI-EELKAHWKWEQVLAMC---QAIISSNS--ERLP-------DINIYQLKVLDC 333
Query: 356 LIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSM 415
+ + L +EAL Y T+ Y+ +P HP+ G+Q GKL+ G A+K++
Sbjct: 334 AMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNL 393
Query: 416 TEAVEILRITHG 427
A +I+R+THG
Sbjct: 394 RLAFDIMRVTHG 405
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 115 bits (287), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 116/432 (26%), Positives = 188/432 (43%), Gaps = 65/432 (15%)
Query: 8 GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
GE++ +P S CD C L +CS C+V YC + CQK W H+ E
Sbjct: 63 GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRE 122
Query: 67 CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVARILFELI 126
C+ L KS P D+V L+ R++F+L+
Sbjct: 123 CKCL--------KSCKPRYPP------------DSV-------------RLLGRVVFKLM 149
Query: 127 IWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQ--IANLVNLILQWPEI 184
L Y+ + + +N L + +QL++ Q + + Q P
Sbjct: 150 DGAPSESEKLYSFYD---LESNINKLTEDRKEGL--RQLVMTFQHFMREEIQDASQLP-- 202
Query: 185 SINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAV 244
++ E F+K+ CN+ TICN+E++ +G GLYP IS++NHSC PN +VF G ++RAV
Sbjct: 203 PAFDLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAV 262
Query: 245 QHVPKGAEGQ--FDDI-----QESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRS 297
+ + G E + D+ + L C + C +D D T +
Sbjct: 263 RDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRCQTQDKDADMLTGDEQVWKEV 322
Query: 298 KEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTR--EK 355
+E +KKI E+ K L C Q ++S+ E+L +N+ Q + +
Sbjct: 323 QESLKKI-EELKAHWKWEQVLAMC---QAIISSNS--ERLP-------DINIYQLKVLDC 369
Query: 356 LIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSM 415
+ + L +EAL Y T+ Y+ +P HP+ G+Q GKL+ G A+K++
Sbjct: 370 AMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNL 429
Query: 416 TEAVEILRITHG 427
A +I+R+THG
Sbjct: 430 RLAFDIMRVTHG 441
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 118/249 (47%), Gaps = 22/249 (8%)
Query: 188 EIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHV 247
++ E F+K+ CN+ TICN+E + +G GLYP IS++NHSC PN +VF G ++RAV+ +
Sbjct: 171 DLFEAFAKVICNSFTICNAEXQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDI 230
Query: 248 PKGAE---GQFDDIQES----AILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEE 300
G E D + S L C + C +D D T + +E
Sbjct: 231 EVGEELTICYLDXLXTSEERRKQLRDQYCFECDCFRCQTQDKDADXLTGDEQVWKEVQES 290
Query: 301 IKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTR--EKLIK 358
+KKI E+ K L C Q ++S+ E+L +N+ Q + +
Sbjct: 291 LKKI-EELKAHWKWEQVLAXC---QAIISSNS--ERLP-------DINIYQLKVLDCAXD 337
Query: 359 ILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEA 418
+ L +EAL Y T Y+ +P HP+ G+Q GKL+ G A K++ A
Sbjct: 338 ACINLGLLEEALFYGTRTXEPYRIFFPGSHPVRGVQVXKVGKLQLHQGXFPQAXKNLRLA 397
Query: 419 VEILRITHG 427
+I R+THG
Sbjct: 398 FDIXRVTHG 406
>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone
Methyltransferase Smyd1
Length = 490
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 102/462 (22%), Positives = 188/462 (40%), Gaps = 85/462 (18%)
Query: 7 SGEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRL 65
+ +VI ++ Y V +S C CF L +C C+ YC CQK W H+
Sbjct: 29 AADVIFAERAYSAVVFDSLINFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKN 88
Query: 66 ECQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVARILFEL 125
EC + + K P N+N+ L ARI++
Sbjct: 89 ECAAIKKYGK------VP---------------NENI-------------RLAARIMWR- 113
Query: 126 IIWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQIANLVNLILQWP--- 182
+ GL + + V + FG++ ++K+L + ++ + WP
Sbjct: 114 -VEREGTGLTEGCLVSVDDLQNHVEH-FGEE----EQKELRV-----DVDTFLQYWPPQS 162
Query: 183 -EISINEIAENFSKLACNAHTICNSE-LRPLGTGLYPVISIINHSCLPNAVLVFE-GRLA 239
+ S+ I+ F + CN T+ + L+ +G G++P + ++NH C PN ++F G
Sbjct: 163 QQFSMQYISHIFGVINCNGFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHE 222
Query: 240 VVRAVQHVPKGAE----GQFDDIQESAI-------LEGYRCKDDGCSGFLLRDSDDKGFT 288
V+++ H E G+ + +E + L R + L+ +
Sbjct: 223 AVKSMFHTQMRIELRALGKISEGEELTVSYIDFLHLSEERRRQ-------LKKQYYFDCS 275
Query: 289 CQQC--GL-----VRSKEEIK---KIASEVNILSKKTL----ALTSCGNHQEVVSTYKMI 334
C+ C GL + +KE+ K ++ E+ SK TL S G + EVV +
Sbjct: 276 CEHCQKGLKDDLFLAAKEDPKPSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCREC 335
Query: 335 EKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 394
+ Q+ ++ ++ +++ ++L L+ ++EA Y + + Y ++Y + LG+
Sbjct: 336 LEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395
Query: 395 YYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKEL 436
G W G E + +A IL +THG + P K+L
Sbjct: 396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDL 437
>pdb|2D8Q|A Chain A, Solution Structure Of The Mynd Domain Of The Human Zinc
Finger Mynd Domain-Containing Protein 10
Length = 70
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 29 RCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEK 77
RC C A ++ K+CS CQ WYC CQ W+ H C + ++ D+ K
Sbjct: 17 RCAYCSAEAS-KRCSRCQNEWYCCRECQVKHWEKHGKTCVLAAQGDRAK 64
>pdb|2DAN|A Chain A, The Solution Structure Of The Mynd Domain
(Leu384-Cys430) Of Human Zinc Finger Mynd Domain
Containing Protein 10
Length = 60
Score = 37.7 bits (86), Expect = 0.013, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 29 RCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
RC C A ++ K+CS CQ WYC CQ W+ H C
Sbjct: 17 RCAYCSAEAS-KRCSRCQNEWYCCRECQVKHWEKHGKTC 54
>pdb|2DJ8|A Chain A, Solution Structure Of Zf-Mynd Domain Of Protein Cbfa2ti
(Protein Mtg8)
Length = 60
Score = 34.3 bits (77), Expect = 0.15, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 40 KKCSACQVVWYCGSNCQKLDWKLHRLEC 67
+ CS C YCGS CQ DW+ H C
Sbjct: 27 ETCSGCNTARYCGSFCQHKDWEKHHHIC 54
>pdb|2JW6|A Chain A, Solution Structure Of The Deaf1 Mynd Domain
Length = 52
Score = 33.9 bits (76), Expect = 0.22, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 39 LKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
+ +C+ C V YC + CQ+ DWK H+ C
Sbjct: 20 MSECTGCHKVNYCSTFCQRKDWKDHQHIC 48
>pdb|4A24|A Chain A, Structural And Functional Analysis Of The Deaf-1 And
Bs69 Mynd Domains
Length = 47
Score = 33.5 bits (75), Expect = 0.25, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 39 LKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
+ +C+ C V YC + CQ+ DWK H+ C
Sbjct: 15 MSECTGCHKVNYCSTFCQRKDWKDHQHIC 43
>pdb|3VMN|A Chain A, Crystal Structure Of Dextranase From Streptococcus Mutans
pdb|3VMO|A Chain A, Crystal Structure Of Dextranase From Streptococcus Mutans
In Complex With Isomaltotriose
pdb|3VMP|A Chain A, Crystal Structure Of Dextranase From Streptococcus Mutans
In Complex With 4,5-Epoxypentyl Alpha-D-Glucopyranoside
Length = 643
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
Query: 155 KDMSDIDEKQLL--LYAQIANLVNLILQWPEISINEI-AENFSKLACNAHTICNSELRPL 211
KD DI +L +YA+ N + L +++N++ EN SKLA + + +EL P
Sbjct: 301 KDSRDIAHSFMLSDVYAEFLNKMKEKLPQYYLTLNDVNGENISKLANSKQDVIYNELWPF 360
Query: 212 GT---GLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDD 257
GT G P S + + V G+ +V A PK FDD
Sbjct: 361 GTSALGNRPQESYGDLKARVDQVRQATGKSLIVGAYMEEPK-----FDD 404
>pdb|3S8P|A Chain A, Crystal Structure Of The Set Domain Of Human
Histone-Lysine N- Methyltransferase Suv420h1 In Complex
With S-Adenosyl-L-Methionine
pdb|3S8P|B Chain B, Crystal Structure Of The Set Domain Of Human
Histone-Lysine N- Methyltransferase Suv420h1 In Complex
With S-Adenosyl-L-Methionine
Length = 273
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 220 SIINHSCLPNAVLVFEGR-LAVVRAVQHVPKGAE-------GQFDDIQESAILEGYRCKD 271
+ INH C PN V GR A V+A++ + G E G F + E E Y C+
Sbjct: 207 AFINHDCRPNCKFVSTGRDTACVKALRDIEPGEEISCYYGDGFFGENNE--FCECYTCER 264
Query: 272 DGCSGFLLR 280
G F R
Sbjct: 265 RGTGAFKSR 273
>pdb|2OD1|A Chain A, Solution Structure Of The Mynd Domain From Human
Aml1-Eto
Length = 60
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 16 PYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
P PN+ SS S C C ++ + CS C YCGS CQ DW+ H C
Sbjct: 3 PNSGSPNSDSSES-CWNCGRKAS-ETCSGCNTARYCGSFCQHKDWEKHHHIC 52
>pdb|2ODD|A Chain A, Solution Structure Of The Mynd Domain From Aml1-Eto
Complexed With Smrt, A Corepressor
Length = 64
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 42 CSACQVVWYCGSNCQKLDWKLHRLEC 67
CS C YCGS CQ DW+ H C
Sbjct: 31 CSGCNTARYCGSFCQHKDWEKHHHIC 56
>pdb|2R2F|A Chain A, Ribonucleotide Reductase R2f Protein From Salmonella
Typhimurium (Oxidized)
pdb|2R2F|B Chain B, Ribonucleotide Reductase R2f Protein From Salmonella
Typhimurium (Oxidized)
pdb|1R2F|A Chain A, Ribonucleotide Reductase R2f Protein From Salmonella
Typhimurium
pdb|1R2F|B Chain B, Ribonucleotide Reductase R2f Protein From Salmonella
Typhimurium
pdb|2BQ1|I Chain I, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
Salmonella Typhimurium
pdb|2BQ1|J Chain J, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
Salmonella Typhimurium
Length = 319
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 128 WFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDID 161
W N LC++ NK+LM LF +M+D++
Sbjct: 246 WVNDVKAFLCYNANKALMNLGYEALFPPEMADVN 279
>pdb|2VU9|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype A
Binding Domain In Complex With Gt1b
pdb|2VUA|A Chain A, Crystal Structure Of The Botulinum Neurotoxin Serotype A
Binding Domain
Length = 444
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 155 KDMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGT 213
+D +I ++ + Y+Q+ N+ + I +W ++I N SK+ N I + LG
Sbjct: 135 QDTQEIKQRVVFKYSQMINISDYINRWIFVTITNNRLNNSKIYINGRLIDQKPISNLGN 193
>pdb|3BTA|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype A
pdb|2NYY|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Cr1
pdb|2NZ9|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Ar2
pdb|2NZ9|B Chain B, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Ar2
Length = 1295
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 155 KDMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGT 213
+D +I ++ + Y+Q+ N+ + I +W ++I N SK+ N I + LG
Sbjct: 987 QDTQEIKQRVVFKYSQMINISDYINRWIFVTITNNRLNNSKIYINGRLIDQKPISNLGN 1045
>pdb|3V0C|A Chain A, 4.3 Angstrom Crystal Structure Of An Inactive BontA
(E224qR363AY366F)
Length = 1312
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 155 KDMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGT 213
+D +I ++ + Y+Q+ N+ + I +W ++I N SK+ N I + LG
Sbjct: 988 QDTQEIKQRVVFKYSQMINISDYINRWIFVTITNNRLNNSKIYINGRLIDQKPISNLGN 1046
>pdb|3V0A|A Chain A, 2.7 Angstrom Crystal Structure Of BontAI IN COMPLEX WITH
NTNHA
pdb|3V0B|A Chain A, 3.9 Angstrom Crystal Structure Of BontAI IN COMPLEX WITH
NTNHA
Length = 1296
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 155 KDMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGT 213
+D +I ++ + Y+Q+ N+ + I +W ++I N SK+ N I + LG
Sbjct: 988 QDTQEIKQRVVFKYSQMINISDYINRWIFVTITNNRLNNSKIYINGRLIDQKPISNLGN 1046
>pdb|3FUO|A Chain A, The Crystal Structure Of Receptor Binding Domain Of
Botulinum Neurotoxin Serotype A
Length = 426
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 155 KDMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGT 213
+D +I ++ + Y+Q+ N+ + I +W ++I N SK+ N I + LG
Sbjct: 118 QDTQEIKQRVVFKYSQMINISDYINRWIFVTITNNRLNNSKIYINGRLIDQKPISNLGN 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,531,129
Number of Sequences: 62578
Number of extensions: 483496
Number of successful extensions: 1020
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 973
Number of HSP's gapped (non-prelim): 38
length of query: 456
length of database: 14,973,337
effective HSP length: 102
effective length of query: 354
effective length of database: 8,590,381
effective search space: 3040994874
effective search space used: 3040994874
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)