Query 012772
Match_columns 456
No_of_seqs 222 out of 2760
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 06:09:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012772.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012772hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2084 Predicted histone tail 99.8 1.6E-17 3.6E-22 171.8 24.9 390 3-449 32-473 (482)
2 KOG1840 Kinesin light chain [C 99.6 1.2E-14 2.7E-19 146.9 16.7 133 314-446 247-379 (508)
3 KOG1840 Kinesin light chain [C 99.6 3.1E-14 6.7E-19 144.0 18.1 132 314-445 205-336 (508)
4 PF13424 TPR_12: Tetratricopep 99.3 4.7E-12 1E-16 96.8 9.0 78 346-424 1-78 (78)
5 PF00856 SET: SET domain; Int 99.1 1.6E-10 3.6E-15 100.6 6.6 53 203-255 103-159 (162)
6 PF01753 zf-MYND: MYND finger; 99.0 1.9E-10 4.2E-15 73.9 1.0 37 30-67 1-37 (37)
7 CHL00033 ycf3 photosystem I as 98.9 3E-08 6.4E-13 87.7 14.0 126 309-440 36-161 (168)
8 smart00317 SET SET (Su(var)3-9 98.8 3.6E-09 7.9E-14 87.0 3.0 44 214-257 69-116 (116)
9 TIGR02795 tol_pal_ybgF tol-pal 98.7 2.2E-07 4.7E-12 76.4 12.7 115 309-438 3-117 (119)
10 PF13424 TPR_12: Tetratricopep 98.7 1.3E-07 2.9E-12 71.9 8.7 73 309-382 6-78 (78)
11 PRK15359 type III secretion sy 98.5 4.3E-06 9.3E-11 71.8 15.4 112 310-442 26-137 (144)
12 PF13374 TPR_10: Tetratricopep 98.5 2.1E-07 4.6E-12 61.4 4.9 42 391-432 1-42 (42)
13 PRK02603 photosystem I assembl 98.5 2.2E-06 4.7E-11 76.0 12.6 129 309-443 36-164 (172)
14 PRK15363 pathogenicity island 98.4 1.9E-05 4.1E-10 67.5 16.5 113 306-439 33-145 (157)
15 KOG4626 O-linked N-acetylgluco 98.4 1.7E-06 3.8E-11 87.1 11.7 111 313-447 325-435 (966)
16 KOG1839 Uncharacterized protei 98.4 1.2E-06 2.5E-11 95.6 10.1 126 317-443 941-1066(1236)
17 PF13374 TPR_10: Tetratricopep 98.4 5.7E-07 1.2E-11 59.3 4.8 42 349-390 1-42 (42)
18 PLN03088 SGT1, suppressor of 98.3 1.4E-05 3.1E-10 79.3 15.2 106 311-437 5-110 (356)
19 PRK10803 tol-pal system protei 98.3 1.6E-05 3.4E-10 75.2 14.4 107 319-440 154-260 (263)
20 KOG4626 O-linked N-acetylgluco 98.3 7.4E-06 1.6E-10 82.7 12.3 113 308-444 354-466 (966)
21 KOG2589 Histone tail methylase 98.3 4.2E-07 9E-12 85.6 3.2 75 197-275 175-254 (453)
22 KOG0553 TPR repeat-containing 98.3 8.5E-06 1.8E-10 75.9 11.5 118 308-449 81-198 (304)
23 TIGR02552 LcrH_SycD type III s 98.3 3.3E-05 7.1E-10 65.2 14.3 109 310-439 19-127 (135)
24 PF09986 DUF2225: Uncharacteri 98.2 2.8E-05 6.1E-10 71.1 14.0 136 285-422 47-195 (214)
25 TIGR03302 OM_YfiO outer membra 98.2 3.9E-05 8.5E-10 71.5 13.8 115 309-438 34-156 (235)
26 PF12895 Apc3: Anaphase-promot 98.2 1.1E-05 2.4E-10 62.3 8.2 83 321-418 2-84 (84)
27 PF14938 SNAP: Soluble NSF att 98.2 4.1E-05 8.9E-10 73.6 13.9 130 313-449 40-170 (282)
28 PF13414 TPR_11: TPR repeat; P 98.1 2.1E-05 4.6E-10 58.0 8.4 64 350-421 3-67 (69)
29 PRK10866 outer membrane biogen 98.1 0.00028 6.1E-09 66.1 16.9 126 311-448 35-175 (243)
30 PF13525 YfiO: Outer membrane 98.0 0.00059 1.3E-08 62.1 18.1 131 308-448 5-141 (203)
31 PF09976 TPR_21: Tetratricopep 98.0 0.00011 2.3E-09 63.2 12.2 93 313-419 53-145 (145)
32 TIGR02521 type_IV_pilW type IV 98.0 0.00011 2.5E-09 67.0 13.2 61 354-420 103-163 (234)
33 COG3063 PilF Tfp pilus assembl 98.0 8.7E-05 1.9E-09 66.8 11.3 94 310-419 37-130 (250)
34 PF12688 TPR_5: Tetratrico pep 97.9 0.00027 5.8E-09 58.3 12.8 100 311-420 4-103 (120)
35 PF13432 TPR_16: Tetratricopep 97.9 6.9E-05 1.5E-09 54.5 8.3 59 355-421 2-60 (65)
36 KOG1839 Uncharacterized protei 97.9 6E-05 1.3E-09 82.6 10.6 131 315-445 980-1110(1236)
37 TIGR02521 type_IV_pilW type IV 97.9 0.00049 1.1E-08 62.8 15.1 93 315-421 106-198 (234)
38 PF13512 TPR_18: Tetratricopep 97.8 0.00035 7.5E-09 58.8 12.0 88 310-407 12-99 (142)
39 KOG1080 Histone H3 (Lys4) meth 97.8 1.2E-05 2.7E-10 87.4 3.3 41 218-258 939-983 (1005)
40 KOG1710 MYND Zn-finger and ank 97.8 6.5E-06 1.4E-10 75.6 1.0 44 27-70 319-362 (396)
41 CHL00033 ycf3 photosystem I as 97.8 0.00012 2.5E-09 64.6 8.8 84 349-438 34-117 (168)
42 cd00189 TPR Tetratricopeptide 97.8 0.00013 2.8E-09 55.7 8.2 93 313-421 5-97 (100)
43 TIGR00990 3a0801s09 mitochondr 97.8 0.0003 6.4E-09 75.4 13.2 94 312-421 369-462 (615)
44 PRK11189 lipoprotein NlpI; Pro 97.8 0.0004 8.7E-09 67.2 12.9 94 312-421 68-161 (296)
45 COG1729 Uncharacterized protei 97.7 0.00032 7E-09 65.1 11.3 100 311-420 144-243 (262)
46 PF14938 SNAP: Soluble NSF att 97.7 0.00043 9.3E-09 66.5 12.5 105 314-422 80-185 (282)
47 TIGR03302 OM_YfiO outer membra 97.7 0.0011 2.4E-08 61.7 14.9 121 312-447 74-216 (235)
48 TIGR00990 3a0801s09 mitochondr 97.7 0.0004 8.7E-09 74.4 13.5 91 315-421 338-428 (615)
49 PF09976 TPR_21: Tetratricopep 97.7 0.0035 7.7E-08 53.6 16.6 100 308-417 11-110 (145)
50 PRK15179 Vi polysaccharide bio 97.7 0.00072 1.6E-08 72.5 14.2 91 314-420 92-182 (694)
51 PF13371 TPR_9: Tetratricopept 97.7 0.00024 5.3E-09 52.9 7.8 72 356-440 1-72 (73)
52 PLN03098 LPA1 LOW PSII ACCUMUL 97.7 0.00026 5.6E-09 70.4 9.9 73 344-421 69-141 (453)
53 PRK10370 formate-dependent nit 97.7 0.0017 3.8E-08 58.8 14.5 112 313-445 78-192 (198)
54 PRK09782 bacteriophage N4 rece 97.6 0.00071 1.5E-08 75.4 14.0 108 316-444 617-724 (987)
55 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.00039 8.4E-09 56.8 8.8 85 351-445 3-87 (119)
56 KOG4442 Clathrin coat binding 97.6 4.2E-05 9.1E-10 78.4 3.4 62 220-281 195-262 (729)
57 PRK11788 tetratricopeptide rep 97.6 0.001 2.2E-08 66.8 13.4 94 315-421 148-243 (389)
58 PRK11788 tetratricopeptide rep 97.6 0.001 2.2E-08 66.7 13.2 94 314-420 41-135 (389)
59 PRK15331 chaperone protein Sic 97.6 0.0026 5.7E-08 54.8 13.3 108 306-435 35-142 (165)
60 KOG0543 FKBP-type peptidyl-pro 97.5 0.003 6.6E-08 61.6 15.2 106 308-421 208-320 (397)
61 PRK02603 photosystem I assembl 97.5 0.0017 3.8E-08 57.3 12.8 72 345-421 30-101 (172)
62 PF03704 BTAD: Bacterial trans 97.5 0.004 8.6E-08 53.3 13.6 115 308-430 6-134 (146)
63 COG3063 PilF Tfp pilus assembl 97.5 0.00061 1.3E-08 61.4 8.5 96 314-423 75-170 (250)
64 KOG1173 Anaphase-promoting com 97.4 0.00068 1.5E-08 68.3 9.5 109 316-438 422-530 (611)
65 PRK15174 Vi polysaccharide exp 97.4 0.003 6.5E-08 68.1 15.0 115 312-445 288-402 (656)
66 TIGR02917 PEP_TPR_lipo putativ 97.4 0.0018 4E-08 71.6 13.0 103 311-421 25-154 (899)
67 PRK15174 Vi polysaccharide exp 97.4 0.0022 4.7E-08 69.1 13.1 93 313-421 251-347 (656)
68 PRK15179 Vi polysaccharide bio 97.3 0.0019 4.2E-08 69.3 12.2 96 312-423 124-219 (694)
69 PF13432 TPR_16: Tetratricopep 97.3 0.0017 3.7E-08 47.1 8.0 59 313-379 2-60 (65)
70 PRK04841 transcriptional regul 97.3 0.0046 1E-07 69.4 14.9 108 316-425 499-606 (903)
71 KOG4234 TPR repeat-containing 97.2 0.0063 1.4E-07 53.8 12.0 114 297-421 84-197 (271)
72 PRK09782 bacteriophage N4 rece 97.2 0.0033 7.3E-08 70.1 12.7 92 321-434 589-680 (987)
73 PF13414 TPR_11: TPR repeat; P 97.2 0.003 6.5E-08 46.3 8.3 62 310-379 5-67 (69)
74 PRK10803 tol-pal system protei 97.2 0.019 4.2E-07 54.3 15.6 85 352-446 144-229 (263)
75 PRK12370 invasion protein regu 97.1 0.0023 5E-08 67.6 10.1 84 322-421 318-401 (553)
76 KOG1130 Predicted G-alpha GTPa 97.1 0.0074 1.6E-07 58.8 12.4 102 319-424 206-307 (639)
77 PRK11447 cellulose synthase su 97.1 0.0076 1.6E-07 69.4 14.9 97 312-421 307-414 (1157)
78 cd05804 StaR_like StaR_like; a 97.1 0.0034 7.3E-08 62.1 10.7 92 317-420 123-214 (355)
79 COG4105 ComL DNA uptake lipopr 97.1 0.038 8.2E-07 51.1 16.3 127 310-448 36-167 (254)
80 PRK15359 type III secretion sy 97.1 0.0027 5.7E-08 54.4 8.2 67 354-433 28-94 (144)
81 PRK12370 invasion protein regu 97.1 0.0046 1E-07 65.3 11.6 92 314-421 344-435 (553)
82 PF14559 TPR_19: Tetratricopep 97.1 0.0015 3.3E-08 47.7 5.7 52 361-420 2-53 (68)
83 PRK11447 cellulose synthase su 97.0 0.0057 1.2E-07 70.4 12.9 94 315-421 276-380 (1157)
84 COG2940 Proteins containing SE 97.0 0.00044 9.4E-09 71.5 3.4 61 218-278 405-479 (480)
85 PF12688 TPR_5: Tetratrico pep 97.0 0.0066 1.4E-07 50.0 9.1 64 352-420 3-66 (120)
86 COG2956 Predicted N-acetylgluc 96.9 0.033 7.1E-07 53.0 14.2 127 309-447 108-262 (389)
87 TIGR02552 LcrH_SycD type III s 96.8 0.0054 1.2E-07 51.5 8.0 64 350-421 17-80 (135)
88 KOG1125 TPR repeat-containing 96.8 0.0024 5.2E-08 64.7 6.3 97 318-430 440-536 (579)
89 PRK04841 transcriptional regul 96.8 0.024 5.1E-07 63.7 15.1 110 313-425 536-645 (903)
90 KOG1126 DNA-binding cell divis 96.8 0.0013 2.8E-08 67.5 4.3 68 347-422 486-553 (638)
91 KOG1173 Anaphase-promoting com 96.7 0.0054 1.2E-07 62.0 8.2 101 344-449 411-511 (611)
92 TIGR02917 PEP_TPR_lipo putativ 96.7 0.025 5.3E-07 62.6 14.4 62 350-420 770-831 (899)
93 cd00189 TPR Tetratricopeptide 96.7 0.019 4.1E-07 43.3 9.4 62 352-421 2-63 (100)
94 PF13176 TPR_7: Tetratricopept 96.6 0.0046 1E-07 39.1 4.7 31 394-424 1-31 (36)
95 KOG1130 Predicted G-alpha GTPa 96.6 0.025 5.5E-07 55.3 11.6 111 319-433 246-356 (639)
96 KOG2376 Signal recognition par 96.6 0.039 8.4E-07 56.4 13.3 105 315-419 117-251 (652)
97 PRK10049 pgaA outer membrane p 96.6 0.018 3.9E-07 63.3 12.1 93 312-421 53-145 (765)
98 PF14559 TPR_19: Tetratricopep 96.6 0.0081 1.8E-07 43.8 6.4 52 319-378 2-53 (68)
99 PRK11189 lipoprotein NlpI; Pro 96.6 0.02 4.2E-07 55.4 10.8 66 348-421 62-127 (296)
100 PRK10049 pgaA outer membrane p 96.6 0.031 6.7E-07 61.5 13.5 97 317-422 319-423 (765)
101 PRK10370 formate-dependent nit 96.5 0.024 5.1E-07 51.4 10.3 93 321-434 52-147 (198)
102 PF12968 DUF3856: Domain of Un 96.5 0.2 4.3E-06 40.6 14.1 113 314-428 15-136 (144)
103 PF13429 TPR_15: Tetratricopep 96.4 0.012 2.7E-07 56.2 8.3 101 313-434 151-251 (280)
104 PF00515 TPR_1: Tetratricopept 96.4 0.0082 1.8E-07 37.1 4.7 31 392-422 1-31 (34)
105 TIGR00540 hemY_coli hemY prote 96.4 0.03 6.4E-07 56.9 11.4 90 322-424 313-402 (409)
106 PRK14574 hmsH outer membrane p 96.4 0.028 6E-07 61.7 11.6 60 354-421 106-165 (822)
107 KOG2002 TPR-containing nuclear 96.4 0.029 6.2E-07 60.4 11.0 99 312-422 274-372 (1018)
108 PF13824 zf-Mss51: Zinc-finger 96.4 0.0052 1.1E-07 42.3 3.7 45 30-74 2-49 (55)
109 PRK15363 pathogenicity island 96.3 0.014 3E-07 50.2 7.1 74 347-433 32-105 (157)
110 PF07719 TPR_2: Tetratricopept 96.3 0.0097 2.1E-07 36.7 4.7 31 392-422 1-31 (34)
111 KOG2376 Signal recognition par 96.3 0.13 2.7E-06 52.8 14.7 126 313-449 84-232 (652)
112 KOG1126 DNA-binding cell divis 96.3 0.0076 1.7E-07 62.1 6.2 86 320-421 433-518 (638)
113 PF13176 TPR_7: Tetratricopept 96.3 0.011 2.4E-07 37.3 4.8 31 352-382 1-31 (36)
114 KOG0547 Translocase of outer m 96.2 0.03 6.4E-07 56.0 9.5 102 315-425 469-570 (606)
115 PF08631 SPO22: Meiosis protei 96.2 0.074 1.6E-06 50.9 12.1 113 320-434 5-124 (278)
116 KOG1082 Histone H3 (Lys9) meth 96.1 0.0041 8.9E-08 61.9 3.4 39 220-258 274-320 (364)
117 PF12862 Apc5: Anaphase-promot 96.1 0.086 1.9E-06 41.4 10.3 83 360-444 8-91 (94)
118 KOG1585 Protein required for f 96.1 0.19 4E-06 46.2 13.3 106 315-425 38-143 (308)
119 KOG4555 TPR repeat-containing 96.1 0.31 6.7E-06 40.4 13.3 120 314-445 49-172 (175)
120 KOG0550 Molecular chaperone (D 96.1 0.086 1.9E-06 51.7 11.8 99 313-424 254-353 (486)
121 COG5010 TadD Flp pilus assembl 96.1 0.037 8.1E-07 51.0 8.9 87 318-420 110-196 (257)
122 KOG1155 Anaphase-promoting com 96.1 0.07 1.5E-06 53.1 11.3 85 320-420 376-460 (559)
123 COG2956 Predicted N-acetylgluc 96.0 0.063 1.4E-06 51.1 10.4 95 313-422 185-279 (389)
124 PF13181 TPR_8: Tetratricopept 96.0 0.017 3.6E-07 35.7 4.6 32 392-423 1-32 (34)
125 PLN03098 LPA1 LOW PSII ACCUMUL 96.0 0.033 7.2E-07 55.7 8.7 63 312-379 79-141 (453)
126 cd05804 StaR_like StaR_like; a 95.9 0.03 6.6E-07 55.3 8.5 74 342-423 106-179 (355)
127 COG4783 Putative Zn-dependent 95.9 0.12 2.6E-06 51.8 12.1 91 313-419 311-401 (484)
128 KOG2076 RNA polymerase III tra 95.9 0.13 2.9E-06 55.0 12.9 98 307-420 138-235 (895)
129 PF13429 TPR_15: Tetratricopep 95.8 0.023 5E-07 54.3 6.8 94 314-423 186-279 (280)
130 KOG1155 Anaphase-promoting com 95.8 0.21 4.5E-06 49.9 13.2 103 326-445 416-518 (559)
131 PRK10866 outer membrane biogen 95.8 0.14 3E-06 48.0 11.6 86 349-444 31-116 (243)
132 PF12895 Apc3: Anaphase-promot 95.7 0.017 3.7E-07 44.2 4.6 50 362-417 1-50 (84)
133 KOG2003 TPR repeat-containing 95.7 0.21 4.5E-06 49.5 12.7 54 363-424 503-556 (840)
134 PLN03088 SGT1, suppressor of 95.6 0.058 1.3E-06 53.6 9.0 60 354-421 6-65 (356)
135 KOG1174 Anaphase-promoting com 95.6 0.19 4.1E-06 49.5 11.9 134 311-454 337-498 (564)
136 COG1729 Uncharacterized protei 95.6 0.092 2E-06 49.0 9.5 89 353-451 144-232 (262)
137 KOG4648 Uncharacterized conser 95.6 0.056 1.2E-06 51.7 8.1 95 311-421 100-194 (536)
138 KOG1941 Acetylcholine receptor 95.5 0.19 4.2E-06 48.6 11.4 119 321-443 135-255 (518)
139 KOG1083 Putative transcription 95.5 0.0076 1.6E-07 64.8 2.2 41 220-260 1252-1296(1306)
140 PF10579 Rapsyn_N: Rapsyn N-te 95.5 0.21 4.7E-06 37.3 9.1 70 309-383 7-76 (80)
141 KOG1141 Predicted histone meth 95.4 0.004 8.7E-08 65.1 0.1 60 219-278 1190-1261(1262)
142 KOG2076 RNA polymerase III tra 95.4 0.13 2.8E-06 55.1 10.8 91 311-416 417-507 (895)
143 PRK10747 putative protoheme IX 95.4 0.14 3.1E-06 51.7 11.1 98 315-420 160-291 (398)
144 PF13525 YfiO: Outer membrane 95.4 0.35 7.6E-06 43.9 12.6 86 350-445 5-90 (203)
145 COG2976 Uncharacterized protei 95.3 0.48 1E-05 42.1 12.3 97 312-422 93-189 (207)
146 KOG3060 Uncharacterized conser 95.3 0.17 3.7E-06 46.7 9.9 69 350-423 154-222 (289)
147 PRK10747 putative protoheme IX 95.2 0.17 3.7E-06 51.2 11.0 62 352-422 330-391 (398)
148 KOG0548 Molecular co-chaperone 95.1 0.45 9.7E-06 48.3 13.3 92 314-421 364-455 (539)
149 KOG4642 Chaperone-dependent E3 95.1 0.21 4.5E-06 45.7 9.9 92 317-424 19-110 (284)
150 PF13371 TPR_9: Tetratricopept 95.1 0.11 2.4E-06 38.2 7.0 63 317-392 4-66 (73)
151 TIGR00540 hemY_coli hemY prote 95.0 1.3 2.8E-05 44.9 16.8 21 356-376 124-144 (409)
152 PRK10153 DNA-binding transcrip 95.0 0.094 2E-06 54.7 8.5 68 350-431 420-487 (517)
153 PF00515 TPR_1: Tetratricopept 94.9 0.068 1.5E-06 32.9 4.6 29 351-379 2-30 (34)
154 KOG2003 TPR repeat-containing 94.9 0.25 5.4E-06 49.0 10.5 100 320-443 502-601 (840)
155 PF10516 SHNi-TPR: SHNi-TPR; 94.9 0.072 1.6E-06 34.0 4.6 37 351-387 2-38 (38)
156 KOG0553 TPR repeat-containing 94.9 0.069 1.5E-06 50.4 6.3 59 313-379 120-178 (304)
157 KOG1085 Predicted methyltransf 94.8 0.023 5E-07 52.5 3.1 40 219-258 334-377 (392)
158 PF12862 Apc5: Anaphase-promot 94.8 0.45 9.8E-06 37.3 10.2 81 320-402 10-91 (94)
159 PF10300 DUF3808: Protein of u 94.8 0.82 1.8E-05 47.2 14.7 123 312-445 271-400 (468)
160 COG3071 HemY Uncharacterized e 94.8 0.55 1.2E-05 46.0 12.3 70 342-423 323-392 (400)
161 KOG0547 Translocase of outer m 94.7 0.23 4.9E-06 49.9 9.8 122 307-445 114-236 (606)
162 PLN03081 pentatricopeptide (PP 94.7 0.48 1E-05 51.7 13.4 91 351-449 495-603 (697)
163 PLN03158 methionine aminopepti 94.6 0.024 5.3E-07 56.7 3.0 38 26-64 8-52 (396)
164 KOG0548 Molecular co-chaperone 94.6 0.35 7.5E-06 49.1 10.8 128 312-448 261-406 (539)
165 KOG0545 Aryl-hydrocarbon recep 94.6 2.1 4.6E-05 39.5 14.7 106 308-421 178-293 (329)
166 PF10602 RPN7: 26S proteasome 94.5 0.39 8.5E-06 42.6 10.1 105 311-422 39-143 (177)
167 PF07719 TPR_2: Tetratricopept 94.3 0.11 2.5E-06 31.7 4.6 29 351-379 2-30 (34)
168 KOG1129 TPR repeat-containing 94.3 0.083 1.8E-06 50.4 5.5 87 321-423 303-389 (478)
169 KOG2002 TPR-containing nuclear 94.3 0.75 1.6E-05 49.9 13.1 122 312-446 456-579 (1018)
170 PF03704 BTAD: Bacterial trans 94.3 0.74 1.6E-05 39.0 11.2 78 310-395 64-142 (146)
171 PF08631 SPO22: Meiosis protei 94.2 0.32 7E-06 46.5 9.5 77 361-437 4-83 (278)
172 KOG1125 TPR repeat-containing 94.1 0.096 2.1E-06 53.4 5.9 76 322-405 478-557 (579)
173 KOG0508 Ankyrin repeat protein 94.0 0.07 1.5E-06 53.0 4.4 72 333-404 320-391 (615)
174 KOG0508 Ankyrin repeat protein 93.9 0.11 2.3E-06 51.8 5.6 78 372-449 317-394 (615)
175 KOG1128 Uncharacterized conser 93.8 0.49 1.1E-05 49.8 10.4 120 287-422 459-583 (777)
176 PF09295 ChAPs: ChAPs (Chs5p-A 93.8 0.52 1.1E-05 47.3 10.5 83 318-416 210-292 (395)
177 PF13181 TPR_8: Tetratricopept 93.6 0.19 4.1E-06 30.8 4.6 30 351-380 2-31 (34)
178 PRK15331 chaperone protein Sic 93.6 0.67 1.5E-05 40.1 9.4 77 344-428 31-107 (165)
179 COG5010 TadD Flp pilus assembl 93.6 0.97 2.1E-05 41.9 10.9 62 354-423 104-165 (257)
180 PF13428 TPR_14: Tetratricopep 93.6 0.15 3.3E-06 33.6 4.3 36 394-434 3-38 (44)
181 PF10516 SHNi-TPR: SHNi-TPR; 93.5 0.21 4.5E-06 31.9 4.6 37 393-429 2-38 (38)
182 PRK14720 transcript cleavage f 93.5 0.5 1.1E-05 52.0 10.3 64 352-424 118-181 (906)
183 KOG0624 dsRNA-activated protei 93.4 1.6 3.4E-05 42.3 12.2 114 311-445 41-154 (504)
184 KOG1941 Acetylcholine receptor 93.4 0.88 1.9E-05 44.2 10.6 101 323-425 177-279 (518)
185 COG3118 Thioredoxin domain-con 93.3 5.6 0.00012 37.8 15.5 123 309-442 135-301 (304)
186 PRK14574 hmsH outer membrane p 93.2 1.8 3.9E-05 47.8 14.3 98 316-421 375-479 (822)
187 PF04733 Coatomer_E: Coatomer 93.2 2.1 4.5E-05 41.2 13.2 101 323-444 182-283 (290)
188 PF13428 TPR_14: Tetratricopep 93.1 0.17 3.7E-06 33.3 4.0 28 351-378 2-29 (44)
189 COG4783 Putative Zn-dependent 93.1 2 4.4E-05 43.3 13.0 108 317-444 349-473 (484)
190 PLN03218 maturation of RBCL 1; 93.0 1.2 2.7E-05 50.6 12.9 90 316-417 515-604 (1060)
191 PF04438 zf-HIT: HIT zinc fing 93.0 0.038 8.1E-07 33.3 0.6 28 28-57 3-30 (30)
192 PLN03218 maturation of RBCL 1; 93.0 1.8 4E-05 49.2 14.3 53 318-377 589-641 (1060)
193 PLN03077 Protein ECB2; Provisi 93.0 1.9 4.2E-05 48.2 14.6 127 317-449 598-766 (857)
194 smart00101 14_3_3 14-3-3 homol 93.0 3.6 7.9E-05 38.3 13.9 57 366-422 144-201 (244)
195 KOG2857 Predicted MYND Zn-fing 92.9 0.039 8.6E-07 45.4 0.7 40 27-71 5-46 (157)
196 PF00244 14-3-3: 14-3-3 protei 92.8 4.2 9.1E-05 37.8 14.1 82 366-447 142-225 (236)
197 PF04184 ST7: ST7 protein; In 92.6 0.95 2.1E-05 45.9 10.0 89 323-417 215-320 (539)
198 KOG1586 Protein required for f 92.4 2.8 6E-05 38.5 11.7 95 320-419 85-181 (288)
199 PF04781 DUF627: Protein of un 92.3 2.6 5.7E-05 33.9 10.3 102 314-421 2-107 (111)
200 KOG0550 Molecular chaperone (D 92.3 0.96 2.1E-05 44.7 9.4 96 319-423 214-318 (486)
201 PRK14720 transcript cleavage f 92.2 0.91 2E-05 50.1 10.2 103 316-433 39-152 (906)
202 PF13174 TPR_6: Tetratricopept 92.2 0.23 5E-06 30.0 3.5 28 394-421 2-29 (33)
203 PF09295 ChAPs: ChAPs (Chs5p-A 92.1 1.5 3.3E-05 44.0 10.9 100 321-447 182-281 (395)
204 KOG1585 Protein required for f 92.1 1.7 3.8E-05 40.0 10.1 101 313-417 115-215 (308)
205 KOG1586 Protein required for f 92.0 9.8 0.00021 35.0 15.5 120 323-450 49-170 (288)
206 KOG3617 WD40 and TPR repeat-co 92.0 0.86 1.9E-05 48.7 9.2 79 314-418 806-884 (1416)
207 PF06552 TOM20_plant: Plant sp 91.8 6 0.00013 34.9 12.8 103 348-451 23-137 (186)
208 KOG3081 Vesicle coat complex C 91.8 2.1 4.5E-05 40.0 10.4 68 375-443 191-271 (299)
209 PF09986 DUF2225: Uncharacteri 91.5 1.1 2.3E-05 41.1 8.4 68 363-431 90-157 (214)
210 COG4235 Cytochrome c biogenesi 91.4 5 0.00011 38.2 12.8 116 314-449 162-280 (287)
211 KOG1129 TPR repeat-containing 91.2 0.59 1.3E-05 44.8 6.5 96 318-421 334-458 (478)
212 KOG0624 dsRNA-activated protei 91.2 10 0.00022 36.9 14.6 118 305-443 152-269 (504)
213 PF14561 TPR_20: Tetratricopep 91.0 1.4 3E-05 34.2 7.5 56 346-402 18-89 (90)
214 KOG1174 Anaphase-promoting com 90.9 1.7 3.7E-05 43.0 9.5 68 345-421 433-500 (564)
215 smart00028 TPR Tetratricopepti 90.9 0.31 6.6E-06 28.2 3.0 29 393-421 2-30 (34)
216 PF13512 TPR_18: Tetratricopep 90.4 1.5 3.3E-05 37.1 7.7 49 312-365 51-99 (142)
217 KOG1156 N-terminal acetyltrans 90.4 2 4.3E-05 44.8 9.9 117 311-451 10-126 (700)
218 KOG4555 TPR repeat-containing 90.4 1.3 2.8E-05 36.8 6.9 60 355-422 48-107 (175)
219 PF13174 TPR_6: Tetratricopept 90.4 0.42 9.1E-06 28.7 3.3 28 352-379 2-29 (33)
220 PF12569 NARP1: NMDA receptor- 90.3 1.1 2.4E-05 46.7 8.2 64 349-420 193-256 (517)
221 PF04733 Coatomer_E: Coatomer 90.2 3.5 7.7E-05 39.6 11.1 85 318-420 141-229 (290)
222 PF13431 TPR_17: Tetratricopep 90.1 0.22 4.8E-06 30.9 1.9 27 387-413 8-34 (34)
223 PF04910 Tcf25: Transcriptiona 90.0 5.5 0.00012 39.6 12.5 82 297-378 25-131 (360)
224 PF13431 TPR_17: Tetratricopep 89.8 0.49 1.1E-05 29.3 3.2 25 347-371 10-34 (34)
225 PF07721 TPR_4: Tetratricopept 89.3 0.47 1E-05 27.3 2.7 25 393-417 2-26 (26)
226 PLN03077 Protein ECB2; Provisi 89.1 4.2 9.1E-05 45.5 12.3 90 316-418 562-651 (857)
227 KOG4162 Predicted calmodulin-b 89.0 4 8.6E-05 43.5 10.9 79 342-430 473-551 (799)
228 PLN03081 pentatricopeptide (PP 88.9 2.7 5.9E-05 45.8 10.4 24 395-418 363-386 (697)
229 PF12569 NARP1: NMDA receptor- 88.7 9.9 0.00022 39.7 13.8 104 315-426 201-339 (517)
230 PF09670 Cas_Cas02710: CRISPR- 88.7 14 0.0003 37.0 14.5 112 313-430 136-283 (379)
231 KOG3612 PHD Zn-finger protein 88.3 0.11 2.4E-06 52.4 -0.7 42 26-71 526-568 (588)
232 COG4700 Uncharacterized protei 88.2 7.3 0.00016 34.6 10.3 95 313-421 94-189 (251)
233 KOG3785 Uncharacterized conser 88.2 4.6 9.9E-05 39.3 9.9 86 318-418 32-117 (557)
234 COG4700 Uncharacterized protei 88.0 2.5 5.5E-05 37.4 7.4 68 348-422 87-154 (251)
235 TIGR03504 FimV_Cterm FimV C-te 87.9 1.4 3.1E-05 29.1 4.6 25 396-420 3-27 (44)
236 COG2909 MalT ATP-dependent tra 87.7 18 0.00039 39.5 14.9 105 313-425 420-530 (894)
237 PRK10153 DNA-binding transcrip 87.7 6.7 0.00015 41.0 11.9 86 323-422 357-450 (517)
238 KOG2796 Uncharacterized conser 87.6 4.7 0.0001 37.7 9.2 115 319-449 223-337 (366)
239 COG2976 Uncharacterized protei 87.4 12 0.00027 33.4 11.4 70 342-417 82-151 (207)
240 PF10602 RPN7: 26S proteasome 87.4 11 0.00025 33.2 11.6 71 349-424 35-105 (177)
241 PF14561 TPR_20: Tetratricopep 87.2 3.4 7.5E-05 32.0 7.2 55 388-443 18-88 (90)
242 KOG4234 TPR repeat-containing 87.2 3.2 6.8E-05 37.2 7.6 64 355-421 100-163 (271)
243 PRK00418 DNA gyrase inhibitor; 87.1 0.37 8E-06 34.2 1.5 21 39-59 6-36 (62)
244 KOG2041 WD40 repeat protein [G 86.3 15 0.00033 39.0 13.0 28 347-374 793-820 (1189)
245 PF11817 Foie-gras_1: Foie gra 86.3 14 0.00029 34.6 12.1 66 349-416 177-242 (247)
246 PF09311 Rab5-bind: Rabaptin-l 85.7 2.3 5.1E-05 37.7 6.3 51 383-433 131-181 (181)
247 PRK11906 transcriptional regul 85.6 5.2 0.00011 40.5 9.3 68 342-420 333-400 (458)
248 COG3947 Response regulator con 85.6 5.9 0.00013 37.6 8.9 74 350-431 279-352 (361)
249 PLN02789 farnesyltranstransfer 85.5 9.4 0.0002 37.3 11.0 94 320-421 49-171 (320)
250 PF04184 ST7: ST7 protein; In 85.2 14 0.00031 37.8 11.9 89 323-421 183-288 (539)
251 cd02681 MIT_calpain7_1 MIT: do 85.1 10 0.00022 28.4 8.4 53 391-443 5-60 (76)
252 PF07721 TPR_4: Tetratricopept 85.0 1.6 3.4E-05 25.1 3.3 24 352-375 3-26 (26)
253 PF12968 DUF3856: Domain of Un 84.8 16 0.00036 29.9 9.9 83 350-433 7-95 (144)
254 PF00244 14-3-3: 14-3-3 protei 84.7 4 8.6E-05 38.0 7.6 57 325-381 143-200 (236)
255 PRK01343 zinc-binding protein; 84.7 0.65 1.4E-05 32.4 1.7 13 47-59 23-35 (57)
256 KOG4162 Predicted calmodulin-b 84.0 6.6 0.00014 42.0 9.4 88 318-421 694-783 (799)
257 KOG1308 Hsp70-interacting prot 83.8 1.3 2.7E-05 42.9 3.8 96 309-420 115-210 (377)
258 KOG1127 TPR repeat-containing 83.7 9.6 0.00021 42.1 10.6 105 313-426 601-705 (1238)
259 smart00028 TPR Tetratricopepti 83.5 2.1 4.5E-05 24.4 3.6 29 351-379 2-30 (34)
260 PRK10941 hypothetical protein; 83.3 18 0.00038 34.4 11.4 85 349-446 180-264 (269)
261 PF07754 DUF1610: Domain of un 83.1 1.1 2.3E-05 25.4 1.8 24 271-294 1-24 (24)
262 COG0457 NrfG FOG: TPR repeat [ 82.9 11 0.00023 32.8 9.7 95 318-424 140-234 (291)
263 COG3024 Uncharacterized protei 82.8 0.66 1.4E-05 32.8 1.1 11 49-59 27-37 (65)
264 KOG1156 N-terminal acetyltrans 82.6 22 0.00048 37.4 12.3 100 320-437 87-186 (700)
265 PF11817 Foie-gras_1: Foie gra 82.1 14 0.00031 34.5 10.3 74 370-447 158-231 (247)
266 PLN02789 farnesyltranstransfer 81.9 15 0.00033 35.8 10.8 49 350-406 142-190 (320)
267 KOG0543 FKBP-type peptidyl-pro 81.8 4.7 0.0001 39.9 7.0 66 355-420 213-285 (397)
268 TIGR03504 FimV_Cterm FimV C-te 81.8 2 4.4E-05 28.4 3.1 26 353-378 2-27 (44)
269 KOG0495 HAT repeat protein [RN 81.7 16 0.00035 38.6 10.9 58 357-423 625-682 (913)
270 PF14853 Fis1_TPR_C: Fis1 C-te 81.7 3.1 6.7E-05 28.7 4.2 43 394-441 3-45 (53)
271 PF09889 DUF2116: Uncharacteri 81.3 1.3 2.9E-05 31.2 2.3 30 27-63 3-32 (59)
272 PF09311 Rab5-bind: Rabaptin-l 81.2 4.2 9.1E-05 36.1 6.0 47 345-391 135-181 (181)
273 KOG3785 Uncharacterized conser 81.2 13 0.00029 36.2 9.6 115 318-450 67-201 (557)
274 PF03884 DUF329: Domain of unk 80.9 0.74 1.6E-05 32.2 0.9 12 48-59 21-32 (57)
275 KOG1079 Transcriptional repres 80.8 1.2 2.6E-05 46.4 2.7 38 220-257 667-708 (739)
276 PF14853 Fis1_TPR_C: Fis1 C-te 80.7 4 8.6E-05 28.2 4.4 28 352-379 3-30 (53)
277 KOG1127 TPR repeat-containing 80.7 14 0.0003 41.0 10.4 100 310-425 4-107 (1238)
278 KOG4317 Predicted Zn-finger pr 80.7 0.61 1.3E-05 43.9 0.5 38 26-68 6-43 (383)
279 TIGR02710 CRISPR-associated pr 80.1 68 0.0015 32.1 15.2 106 316-424 138-278 (380)
280 KOG2561 Adaptor protein NUB1, 79.9 15 0.00033 36.8 9.7 112 309-424 164-299 (568)
281 cd02682 MIT_AAA_Arch MIT: doma 79.3 24 0.00051 26.3 8.5 59 391-449 5-65 (75)
282 cd02679 MIT_spastin MIT: domai 79.0 21 0.00045 26.9 8.2 60 391-450 7-75 (79)
283 KOG4340 Uncharacterized conser 79.0 9.2 0.0002 36.5 7.6 64 349-420 143-206 (459)
284 KOG4563 Cell cycle-regulated h 79.0 6.4 0.00014 38.4 6.7 59 354-412 45-103 (400)
285 PF10345 Cohesin_load: Cohesin 78.8 76 0.0016 34.0 15.7 100 320-424 72-171 (608)
286 PF01535 PPR: PPR repeat; Int 78.6 3.3 7.2E-05 24.1 3.2 27 352-378 2-28 (31)
287 KOG4648 Uncharacterized conser 78.5 11 0.00023 36.7 7.9 45 355-400 102-146 (536)
288 KOG3364 Membrane protein invol 78.3 27 0.00058 29.4 9.2 86 349-443 31-117 (149)
289 KOG2581 26S proteasome regulat 78.0 24 0.00052 35.1 10.3 76 339-420 198-275 (493)
290 KOG1337 N-methyltransferase [G 77.9 2.3 5E-05 44.0 3.8 82 187-268 200-291 (472)
291 COG3947 Response regulator con 77.2 21 0.00045 34.0 9.3 72 309-388 280-351 (361)
292 PF10255 Paf67: RNA polymerase 76.8 11 0.00024 37.8 8.1 73 354-426 126-198 (404)
293 COG4105 ComL DNA uptake lipopr 76.7 66 0.0014 30.1 15.1 106 312-423 75-198 (254)
294 KOG3616 Selective LIM binding 76.0 21 0.00046 38.2 9.9 80 337-418 813-908 (1636)
295 COG2909 MalT ATP-dependent tra 75.9 87 0.0019 34.5 14.6 107 318-432 468-575 (894)
296 smart00101 14_3_3 14-3-3 homol 75.8 11 0.00024 35.2 7.2 55 325-379 145-200 (244)
297 PRK00398 rpoP DNA-directed RNA 75.7 2 4.4E-05 28.6 1.8 27 270-296 5-31 (46)
298 KOG1464 COP9 signalosome, subu 75.7 22 0.00047 33.5 8.9 84 351-437 146-233 (440)
299 KOG1338 Uncharacterized conser 75.5 4.1 8.9E-05 40.0 4.4 72 183-254 173-255 (466)
300 cd02679 MIT_spastin MIT: domai 75.3 19 0.00042 27.1 7.1 62 307-379 7-68 (79)
301 KOG3783 Uncharacterized conser 75.0 12 0.00026 38.5 7.7 65 356-421 455-520 (546)
302 cd02683 MIT_1 MIT: domain cont 74.7 26 0.00056 26.2 7.7 57 391-447 5-63 (77)
303 cd02684 MIT_2 MIT: domain cont 74.1 34 0.00073 25.5 8.6 59 390-448 4-64 (75)
304 PF04212 MIT: MIT (microtubule 74.1 25 0.00055 25.4 7.5 39 391-429 4-42 (69)
305 cd02681 MIT_calpain7_1 MIT: do 73.7 30 0.00065 25.9 7.8 32 309-340 7-38 (76)
306 PF09613 HrpB1_HrpK: Bacterial 73.7 52 0.0011 28.5 10.3 59 310-376 12-70 (160)
307 COG3071 HemY Uncharacterized e 73.6 18 0.00039 35.8 8.2 67 354-420 267-356 (400)
308 KOG4340 Uncharacterized conser 73.5 17 0.00037 34.7 7.8 79 322-416 24-102 (459)
309 COG0457 NrfG FOG: TPR repeat [ 73.5 30 0.00064 29.8 9.5 90 320-424 179-268 (291)
310 KOG3362 Predicted BBOX Zn-fing 73.2 1.6 3.5E-05 36.3 0.9 32 24-57 115-146 (156)
311 KOG2471 TPR repeat-containing 73.1 8.5 0.00018 39.1 6.0 106 318-424 250-367 (696)
312 KOG0551 Hsp90 co-chaperone CNS 73.0 96 0.0021 30.3 12.7 93 312-417 85-178 (390)
313 PF14949 ARF7EP_C: ARF7 effect 73.0 2.2 4.8E-05 33.8 1.6 26 39-65 74-100 (103)
314 PF06552 TOM20_plant: Plant sp 72.7 68 0.0015 28.4 11.0 58 325-383 45-106 (186)
315 PF10952 DUF2753: Protein of u 72.3 50 0.0011 27.2 9.1 79 354-433 5-90 (140)
316 KOG0376 Serine-threonine phosp 72.2 4.6 0.0001 40.8 4.0 92 313-420 9-100 (476)
317 PLN03144 Carbon catabolite rep 72.1 2.3 5E-05 45.0 2.0 27 39-65 74-107 (606)
318 TIGR00756 PPR pentatricopeptid 72.0 7.7 0.00017 23.0 3.7 27 352-378 2-28 (35)
319 PF11207 DUF2989: Protein of u 71.9 31 0.00066 31.1 8.7 64 343-411 134-197 (203)
320 PF09297 zf-NADH-PPase: NADH p 71.5 2.8 6.1E-05 25.5 1.5 24 271-294 6-29 (32)
321 PF10952 DUF2753: Protein of u 71.5 57 0.0012 26.9 10.2 72 315-386 8-86 (140)
322 COG3629 DnrI DNA-binding trans 71.0 52 0.0011 31.4 10.6 76 308-391 153-228 (280)
323 PF13453 zf-TFIIB: Transcripti 70.6 3.3 7.2E-05 26.8 1.8 37 270-306 1-40 (41)
324 COG3629 DnrI DNA-binding trans 70.4 46 0.001 31.7 10.1 80 350-437 153-232 (280)
325 PF12854 PPR_1: PPR repeat 69.8 9 0.0002 23.5 3.6 27 350-376 7-33 (34)
326 PF13041 PPR_2: PPR repeat fam 69.8 10 0.00022 25.3 4.3 27 351-377 4-30 (50)
327 PF13812 PPR_3: Pentatricopept 69.8 8.7 0.00019 22.9 3.6 28 351-378 2-29 (34)
328 PF15015 NYD-SP12_N: Spermatog 69.7 1.3E+02 0.0028 30.4 13.5 125 310-443 178-312 (569)
329 cd02678 MIT_VPS4 MIT: domain c 69.6 37 0.00081 25.1 7.6 36 307-342 5-40 (75)
330 PRK11906 transcriptional regul 69.6 28 0.00061 35.4 8.9 91 325-433 275-374 (458)
331 KOG2300 Uncharacterized conser 69.6 93 0.002 32.0 12.2 70 360-433 455-524 (629)
332 COG4235 Cytochrome c biogenesi 68.7 24 0.00053 33.6 7.8 67 346-420 152-221 (287)
333 COG5159 RPN6 26S proteasome re 68.6 95 0.0021 29.7 11.4 56 313-372 8-67 (421)
334 KOG3060 Uncharacterized conser 68.3 79 0.0017 29.7 10.7 61 312-380 158-221 (289)
335 PF02259 FAT: FAT domain; Int 67.9 76 0.0016 30.8 11.8 90 331-424 125-217 (352)
336 KOG4814 Uncharacterized conser 67.7 59 0.0013 34.5 10.7 102 313-424 359-460 (872)
337 PF04053 Coatomer_WDAD: Coatom 67.5 9.9 0.00021 38.9 5.4 78 351-428 348-443 (443)
338 KOG2300 Uncharacterized conser 67.3 71 0.0015 32.8 10.9 95 319-417 456-552 (629)
339 PF12855 Ecl1: Life-span regul 67.1 2.8 6.1E-05 27.5 0.9 30 28-61 7-36 (43)
340 smart00745 MIT Microtubule Int 66.3 50 0.0011 24.3 8.3 38 390-427 6-43 (77)
341 TIGR01010 BexC_CtrB_KpsE polys 66.1 1.2E+02 0.0025 30.1 12.7 82 362-450 178-261 (362)
342 PF04810 zf-Sec23_Sec24: Sec23 65.8 4.1 8.8E-05 26.3 1.5 26 270-295 4-33 (40)
343 PF02259 FAT: FAT domain; Int 65.4 1.4E+02 0.0029 29.0 15.1 112 310-425 148-291 (352)
344 KOG1128 Uncharacterized conser 63.5 33 0.00072 36.7 8.3 57 363-432 498-554 (777)
345 cd02682 MIT_AAA_Arch MIT: doma 63.5 60 0.0013 24.2 7.6 35 308-342 6-40 (75)
346 PF04910 Tcf25: Transcriptiona 63.4 62 0.0014 32.2 10.1 40 346-385 36-75 (360)
347 KOG0495 HAT repeat protein [RN 63.1 53 0.0011 35.0 9.4 19 355-373 690-708 (913)
348 cd02677 MIT_SNX15 MIT: domain 62.9 42 0.00091 25.0 6.7 53 390-442 4-58 (75)
349 KOG2422 Uncharacterized conser 62.7 1.8E+02 0.0038 30.7 13.0 71 308-378 284-370 (665)
350 cd02683 MIT_1 MIT: domain cont 62.6 51 0.0011 24.6 7.1 34 309-342 7-40 (77)
351 PF10579 Rapsyn_N: Rapsyn N-te 62.6 41 0.00088 25.4 6.4 59 362-425 18-76 (80)
352 KOG2908 26S proteasome regulat 61.9 1.7E+02 0.0036 28.8 14.1 78 351-430 76-153 (380)
353 cd02678 MIT_VPS4 MIT: domain c 61.6 63 0.0014 23.9 8.5 54 391-444 5-60 (75)
354 KOG1070 rRNA processing protei 61.6 1.4E+02 0.0031 34.8 12.9 72 351-433 1531-1602(1710)
355 KOG2047 mRNA splicing factor [ 61.3 71 0.0015 34.0 10.0 98 320-424 181-280 (835)
356 KOG2053 Mitochondrial inherita 61.0 66 0.0014 35.4 10.1 27 394-420 79-105 (932)
357 PF10373 EST1_DNA_bind: Est1 D 60.9 15 0.00031 34.7 5.0 44 369-420 1-44 (278)
358 cd02684 MIT_2 MIT: domain cont 60.7 66 0.0014 23.9 7.4 43 308-350 6-49 (75)
359 KOG3617 WD40 and TPR repeat-co 60.7 62 0.0014 35.4 9.6 96 319-424 837-944 (1416)
360 PF13281 DUF4071: Domain of un 60.2 1.2E+02 0.0026 30.3 11.2 98 339-447 130-230 (374)
361 PF12854 PPR_1: PPR repeat 60.0 20 0.00044 21.9 3.8 26 392-417 7-32 (34)
362 cd02680 MIT_calpain7_2 MIT: do 59.9 40 0.00087 25.1 6.0 47 391-440 5-52 (75)
363 COG4649 Uncharacterized protei 59.7 33 0.00072 30.2 6.3 73 317-398 141-213 (221)
364 cd03572 ENTH_epsin_related ENT 59.5 70 0.0015 26.4 7.9 72 381-453 8-93 (122)
365 KOG2796 Uncharacterized conser 59.2 1.6E+02 0.0035 27.9 12.9 63 350-419 177-239 (366)
366 KOG1081 Transcription factor N 59.0 4.1 8.9E-05 41.8 0.8 51 210-260 362-417 (463)
367 PF07720 TPR_3: Tetratricopept 58.1 29 0.00064 21.7 4.3 23 394-416 3-25 (36)
368 COG1997 RPL43A Ribosomal prote 58.0 6.8 0.00015 29.8 1.6 26 271-296 38-63 (89)
369 cd02656 MIT MIT: domain contai 58.0 72 0.0016 23.4 7.8 35 308-342 6-40 (75)
370 KOG2738 Putative methionine am 57.9 5.5 0.00012 37.7 1.4 37 28-65 7-50 (369)
371 PF08189 Meleagrin: Meleagrin/ 57.9 2 4.4E-05 26.6 -0.9 20 44-63 5-25 (39)
372 KOG4563 Cell cycle-regulated h 57.6 39 0.00085 33.2 7.0 61 306-366 39-99 (400)
373 PF04212 MIT: MIT (microtubule 57.4 34 0.00074 24.7 5.4 34 308-341 5-38 (69)
374 smart00661 RPOL9 RNA polymeras 57.1 8.4 0.00018 26.1 1.9 25 271-295 3-29 (52)
375 KOG0276 Vesicle coat complex C 56.7 1.2E+02 0.0027 32.0 10.7 86 353-440 669-772 (794)
376 KOG2053 Mitochondrial inherita 56.3 1.3E+02 0.0028 33.3 11.2 62 316-389 51-112 (932)
377 PRK00420 hypothetical protein; 56.3 40 0.00088 27.3 5.9 29 268-297 23-51 (112)
378 COG1996 RPC10 DNA-directed RNA 56.3 5.7 0.00012 26.8 0.9 26 271-296 9-34 (49)
379 PF10345 Cohesin_load: Cohesin 56.1 1.2E+02 0.0026 32.5 11.4 78 344-424 53-131 (608)
380 KOG2610 Uncharacterized conser 55.9 87 0.0019 30.7 8.9 112 317-444 112-226 (491)
381 PF10300 DUF3808: Protein of u 55.8 58 0.0012 33.7 8.6 63 354-420 271-333 (468)
382 KOG1464 COP9 signalosome, subu 54.4 52 0.0011 31.1 7.0 74 349-425 190-264 (440)
383 KOG0686 COP9 signalosome, subu 54.1 73 0.0016 31.9 8.3 61 313-378 155-215 (466)
384 KOG3081 Vesicle coat complex C 53.8 2E+02 0.0044 27.3 15.1 101 323-443 188-288 (299)
385 smart00745 MIT Microtubule Int 53.0 90 0.0019 22.9 7.8 36 307-342 7-42 (77)
386 KOG2047 mRNA splicing factor [ 52.9 1.2E+02 0.0026 32.4 10.0 96 322-425 491-612 (835)
387 PRK05685 fliS flagellar protei 52.8 1.3E+02 0.0029 25.0 10.2 90 297-386 23-127 (132)
388 PRK11519 tyrosine kinase; Prov 52.6 3E+02 0.0064 30.3 13.9 33 417-449 325-357 (719)
389 KOG1497 COP9 signalosome, subu 52.4 2.3E+02 0.0051 27.6 13.4 75 347-425 100-177 (399)
390 PF12753 Nro1: Nuclear pore co 52.2 38 0.00083 33.7 6.2 69 367-440 335-403 (404)
391 KOG2709 Uncharacterized conser 51.8 42 0.00092 33.5 6.3 59 392-450 22-91 (560)
392 KOG1920 IkappaB kinase complex 50.9 45 0.00098 37.8 7.0 83 362-444 920-1013(1265)
393 PRK06266 transcription initiat 49.5 11 0.00024 33.4 1.9 30 267-298 118-148 (178)
394 PF10255 Paf67: RNA polymerase 49.3 47 0.001 33.4 6.5 63 321-383 135-197 (404)
395 PRK13184 pknD serine/threonine 49.2 1.4E+02 0.003 33.7 10.7 102 322-441 489-596 (932)
396 COG3118 Thioredoxin domain-con 49.0 66 0.0014 30.8 7.0 56 345-401 231-302 (304)
397 COG1998 RPS31 Ribosomal protei 48.8 13 0.00028 25.0 1.6 26 270-295 21-46 (51)
398 TIGR00373 conserved hypothetic 48.6 7 0.00015 33.9 0.5 30 267-298 110-140 (158)
399 COG5600 Transcription-associat 48.6 1.2E+02 0.0026 30.1 8.7 67 350-420 177-248 (413)
400 PF10013 DUF2256: Uncharacteri 48.5 5.9 0.00013 25.7 0.0 31 27-57 8-40 (42)
401 cd02656 MIT MIT: domain contai 48.0 1.1E+02 0.0023 22.4 8.2 38 391-428 5-42 (75)
402 PRK00432 30S ribosomal protein 47.7 14 0.0003 25.2 1.7 24 270-295 22-46 (50)
403 PF07282 OrfB_Zn_ribbon: Putat 47.5 15 0.00032 26.7 2.0 31 271-301 31-61 (69)
404 COG3898 Uncharacterized membra 47.4 1.7E+02 0.0038 29.3 9.7 93 317-425 129-221 (531)
405 PRK15180 Vi polysaccharide bio 47.2 2.8E+02 0.0061 28.6 11.3 49 392-444 776-824 (831)
406 KOG0546 HSP90 co-chaperone CPR 47.0 17 0.00037 35.5 2.9 100 314-421 228-338 (372)
407 PF10938 YfdX: YfdX protein; 46.5 66 0.0014 27.7 6.2 109 313-423 7-148 (155)
408 PF13240 zinc_ribbon_2: zinc-r 45.7 14 0.00031 20.6 1.3 21 271-295 2-22 (23)
409 KOG4814 Uncharacterized conser 44.4 2.7E+02 0.0059 29.8 11.0 104 343-447 749-863 (872)
410 PRK11827 hypothetical protein; 44.1 18 0.00039 25.7 1.9 26 271-296 11-36 (60)
411 KOG2471 TPR repeat-containing 43.9 3.9E+02 0.0085 27.7 12.0 36 389-424 616-651 (696)
412 KOG2610 Uncharacterized conser 43.5 93 0.002 30.5 7.1 86 320-417 187-272 (491)
413 PF05053 Menin: Menin; InterP 43.0 4.3E+02 0.0093 27.9 13.0 61 367-430 296-357 (618)
414 PF13248 zf-ribbon_3: zinc-rib 42.4 17 0.00037 20.9 1.3 21 271-295 5-25 (26)
415 COG1447 CelC Phosphotransferas 41.9 1.8E+02 0.0039 23.2 7.6 51 399-449 26-100 (105)
416 KOG0545 Aryl-hydrocarbon recep 41.7 1.9E+02 0.0041 27.2 8.4 64 351-414 179-252 (329)
417 PRK05978 hypothetical protein; 41.5 13 0.00028 31.7 1.0 38 262-299 27-65 (148)
418 PF08969 USP8_dimer: USP8 dime 41.4 33 0.00071 27.8 3.4 76 349-426 37-112 (115)
419 cd02680 MIT_calpain7_2 MIT: do 41.4 1.5E+02 0.0032 22.1 6.8 32 309-340 7-38 (75)
420 PF03604 DNA_RNApol_7kD: DNA d 41.1 18 0.00038 22.1 1.3 24 271-295 3-26 (32)
421 COG1516 FliS Flagellin-specifi 40.5 2.2E+02 0.0047 23.8 10.2 86 302-387 25-124 (132)
422 PF11207 DUF2989: Protein of u 40.3 2.8E+02 0.0061 25.1 11.7 68 376-448 125-192 (203)
423 smart00659 RPOLCX RNA polymera 40.3 21 0.00046 23.5 1.7 25 271-296 5-29 (44)
424 PF07079 DUF1347: Protein of u 40.1 1.7E+02 0.0036 30.0 8.5 60 307-375 461-520 (549)
425 PF10867 DUF2664: Protein of u 39.4 57 0.0012 25.1 4.1 33 417-449 8-42 (89)
426 PRK09841 cryptic autophosphory 39.4 5E+02 0.011 28.6 13.1 31 420-450 328-358 (726)
427 KOG3824 Huntingtin interacting 39.4 83 0.0018 30.4 6.0 56 358-421 124-179 (472)
428 COG1571 Predicted DNA-binding 38.6 19 0.00041 36.2 1.8 31 270-301 352-382 (421)
429 PF07840 FadR_C: FadR C-termin 38.4 2.7E+02 0.0058 24.3 9.6 57 384-443 83-147 (164)
430 PF08271 TF_Zn_Ribbon: TFIIB z 38.2 17 0.00036 23.7 1.0 28 270-297 2-30 (43)
431 PF04190 DUF410: Protein of un 38.0 3.5E+02 0.0075 25.4 12.9 100 311-416 13-114 (260)
432 PF11781 RRN7: RNA polymerase 37.0 20 0.00044 22.5 1.1 25 271-296 11-35 (36)
433 TIGR02561 HrpB1_HrpK type III 36.9 2.7E+02 0.0059 23.9 12.5 51 319-377 21-71 (153)
434 PF12760 Zn_Tnp_IS1595: Transp 36.5 21 0.00045 23.6 1.2 28 265-294 17-45 (46)
435 cd09034 BRO1_Alix_like Protein 36.4 4.2E+02 0.0091 25.9 11.9 38 388-425 247-284 (345)
436 PF14803 Nudix_N_2: Nudix N-te 36.4 25 0.00054 21.8 1.4 24 271-294 3-30 (34)
437 cd02677 MIT_SNX15 MIT: domain 35.7 1.8E+02 0.004 21.5 7.2 35 308-342 6-40 (75)
438 PF09577 Spore_YpjB: Sporulati 35.5 3.7E+02 0.0079 24.9 15.1 92 307-398 4-103 (232)
439 PF10571 UPF0547: Uncharacteri 35.4 30 0.00065 20.0 1.6 20 29-48 2-23 (26)
440 COG2715 SpmA Uncharacterized m 35.4 3.1E+02 0.0068 24.2 10.3 76 350-430 48-126 (206)
441 PF04423 Rad50_zn_hook: Rad50 35.4 61 0.0013 22.2 3.5 25 288-312 22-46 (54)
442 PF14276 DUF4363: Domain of un 35.4 2.4E+02 0.0052 22.8 8.7 74 357-430 35-115 (121)
443 PF02150 RNA_POL_M_15KD: RNA p 35.2 14 0.00031 23.0 0.2 25 271-295 4-29 (35)
444 PF13281 DUF4071: Domain of un 35.1 1.6E+02 0.0035 29.4 7.6 94 318-422 151-256 (374)
445 TIGR00208 fliS flagellar biosy 35.1 2.5E+02 0.0055 23.0 10.4 83 302-384 25-121 (124)
446 KOG2114 Vacuolar assembly/sort 34.8 3E+02 0.0064 30.5 9.8 24 312-335 372-395 (933)
447 KOG0551 Hsp90 co-chaperone CNS 34.4 2.4E+02 0.0051 27.7 8.2 111 303-420 37-147 (390)
448 PF03194 LUC7: LUC7 N_terminus 33.7 1.2E+02 0.0026 28.5 6.3 41 298-338 122-162 (254)
449 PF05030 SSXT: SSXT protein (N 33.5 1.9E+02 0.004 21.0 6.3 40 294-333 4-43 (65)
450 PF13041 PPR_2: PPR repeat fam 32.9 1E+02 0.0022 20.3 4.3 27 393-419 4-30 (50)
451 PF08772 NOB1_Zn_bind: Nin one 32.9 21 0.00046 26.4 0.9 21 27-47 9-32 (73)
452 KOG3364 Membrane protein invol 32.8 2.6E+02 0.0056 23.7 7.2 67 309-379 33-100 (149)
453 PRK14890 putative Zn-ribbon RN 32.8 36 0.00078 24.0 1.9 24 271-294 10-33 (59)
454 PF05843 Suf: Suppressor of fo 32.7 3.7E+02 0.0079 25.5 9.6 88 322-422 50-137 (280)
455 COG1096 Predicted RNA-binding 32.5 25 0.00054 31.1 1.4 26 268-295 149-174 (188)
456 PF07975 C1_4: TFIIH C1-like d 32.5 21 0.00045 24.5 0.7 27 29-57 1-37 (51)
457 COG1379 PHP family phosphoeste 32.4 20 0.00044 34.4 0.9 30 268-297 246-276 (403)
458 KOG4322 Anaphase-promoting com 32.1 5.6E+02 0.012 26.1 11.6 117 305-425 270-386 (482)
459 COG1675 TFA1 Transcription ini 31.9 29 0.00062 30.6 1.7 30 266-297 113-143 (176)
460 PF05843 Suf: Suppressor of fo 31.6 3.7E+02 0.0079 25.5 9.4 82 324-421 17-99 (280)
461 KOG1915 Cell cycle control pro 31.4 2.8E+02 0.0061 28.7 8.5 67 358-425 74-140 (677)
462 COG4068 Uncharacterized protei 31.4 23 0.00049 24.7 0.7 24 27-57 8-31 (64)
463 KOG2061 Uncharacterized MYND Z 31.1 18 0.0004 35.3 0.4 48 27-75 136-184 (362)
464 PF07079 DUF1347: Protein of u 31.0 4.9E+02 0.011 26.8 10.1 113 315-430 86-213 (549)
465 PRK05685 fliS flagellar protei 30.6 2.7E+02 0.0058 23.2 7.3 46 357-402 42-88 (132)
466 PF08792 A2L_zn_ribbon: A2L zi 30.4 34 0.00073 21.0 1.3 25 271-295 6-30 (33)
467 smart00154 ZnF_AN1 AN1-like Zi 30.1 34 0.00074 21.9 1.4 23 30-53 1-25 (39)
468 COG1198 PriA Primosomal protei 29.8 2.2E+02 0.0047 31.3 8.1 167 266-436 442-683 (730)
469 KOG1538 Uncharacterized conser 29.8 2.6E+02 0.0056 30.0 8.2 47 362-419 785-831 (1081)
470 KOG4850 Uncharacterized conser 29.6 25 0.00053 30.0 0.8 25 28-58 143-167 (190)
471 PHA00626 hypothetical protein 29.4 59 0.0013 22.6 2.5 32 270-301 2-38 (59)
472 KOG2858 Uncharacterized conser 29.4 22 0.00047 34.5 0.6 33 25-58 15-47 (390)
473 COG4976 Predicted methyltransf 29.2 96 0.0021 28.7 4.5 54 360-421 5-58 (287)
474 PF07163 Pex26: Pex26 protein; 29.0 4.8E+02 0.01 25.0 9.1 102 313-415 40-181 (309)
475 TIGR01716 RGG_Cterm transcript 28.9 4.2E+02 0.0092 23.7 11.7 77 346-425 124-201 (220)
476 KOG4507 Uncharacterized conser 28.7 2.9E+02 0.0062 29.4 8.2 101 321-441 620-720 (886)
477 COG4649 Uncharacterized protei 28.5 4.3E+02 0.0092 23.6 11.7 95 315-420 101-195 (221)
478 KOG3824 Huntingtin interacting 28.3 1.6E+02 0.0034 28.6 5.9 59 312-378 120-178 (472)
479 KOG0796 Spliceosome subunit [R 28.3 5.6E+02 0.012 24.9 12.6 41 298-338 121-161 (319)
480 PF09538 FYDLN_acid: Protein o 28.3 43 0.00092 27.0 2.0 23 26-48 8-35 (108)
481 KOG2807 RNA polymerase II tran 28.2 27 0.00058 33.5 0.9 42 15-58 317-362 (378)
482 KOG2709 Uncharacterized conser 28.1 1.7E+02 0.0036 29.5 6.2 68 355-424 27-97 (560)
483 smart00671 SEL1 Sel1-like repe 28.1 1.1E+02 0.0024 18.0 3.6 27 394-420 3-33 (36)
484 cd07625 BAR_Vps17p The Bin/Amp 27.9 4.9E+02 0.011 24.1 9.8 24 345-368 70-93 (230)
485 PF09862 DUF2089: Protein of u 27.8 65 0.0014 26.1 2.9 24 271-298 1-24 (113)
486 KOG1538 Uncharacterized conser 27.5 1.6E+02 0.0034 31.5 6.2 26 354-379 808-833 (1081)
487 PF09416 UPF1_Zn_bind: RNA hel 27.3 20 0.00044 30.6 -0.0 29 29-58 2-32 (152)
488 PF08311 Mad3_BUB1_I: Mad3/BUB 27.2 3.5E+02 0.0076 22.2 9.5 86 322-419 40-126 (126)
489 PF12921 ATP13: Mitochondrial 27.2 3.1E+02 0.0068 22.6 7.1 86 351-438 3-96 (126)
490 PF07295 DUF1451: Protein of u 27.1 39 0.00084 28.8 1.6 25 26-50 111-141 (146)
491 TIGR01053 LSD1 zinc finger dom 26.7 58 0.0012 19.7 1.9 24 271-294 4-27 (31)
492 PF01780 Ribosomal_L37ae: Ribo 26.6 18 0.00038 28.0 -0.5 30 265-296 34-63 (90)
493 COG2888 Predicted Zn-ribbon RN 26.5 39 0.00084 23.8 1.2 33 27-59 9-48 (61)
494 KOG4236 Serine/threonine prote 26.4 33 0.00072 35.6 1.3 54 3-58 120-190 (888)
495 KOG3783 Uncharacterized conser 26.2 7.8E+02 0.017 25.8 11.1 124 313-443 272-396 (546)
496 cd09247 BRO1_Alix_like_2 Prote 25.8 5.3E+02 0.012 25.4 9.7 39 388-426 249-287 (346)
497 KOG2908 26S proteasome regulat 25.7 6.6E+02 0.014 24.8 14.5 98 322-425 89-187 (380)
498 PF01927 Mut7-C: Mut7-C RNAse 25.6 38 0.00083 28.8 1.4 26 270-295 93-133 (147)
499 PRK14562 haloacid dehalogenase 25.5 5E+02 0.011 23.4 15.8 141 301-449 23-181 (204)
500 PF04570 DUF581: Protein of un 25.4 46 0.00099 23.5 1.4 33 27-59 16-50 (58)
No 1
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=99.79 E-value=1.6e-17 Score=171.84 Aligned_cols=390 Identities=21% Similarity=0.267 Sum_probs=237.2
Q ss_pred CCCCCCCeEEEeCCceeecCCCCCCccCcCcCCCCCCccCcCCCCcccccHHhhhhcHHHhHHhchhhHhchhhhccCCC
Q 012772 3 SFHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSVT 82 (456)
Q Consensus 3 ~~i~~G~vil~e~P~~~~~~~~~~~~~C~~C~~~~~~~~C~~C~~v~yCs~~C~~~~~~~H~~EC~~l~~l~~~~~~~~~ 82 (456)
.+|++|++|+.|.|++.+|.. ..|..|+.. ....|..|....+|++.++...|..|+++|.. ........ +.
T Consensus 32 ~~i~~g~~i~~e~p~~~~p~~----~~~~~c~~~-~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~ 103 (482)
T KOG2084|consen 32 QAIEAGEVILEEEPLVVGPAS----KSCSRCLGC-SCDHCRRCLEAIECNKCQQRGWALCGKFACSA-DLAKLECE--PL 103 (482)
T ss_pred cccCCCceEEecCcceeeecc----cCCcccccc-chhhhhcCCccHhhhhhhccCccccchhhcch-hhcccccc--ch
Confidence 589999999999999999997 445555544 55679999999999876666666688888877 33221110 00
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCCcchHH--HHHHHhhhHHHHHHhhhcccchhhhcccCCcchhhhhcccCCCCCcc
Q 012772 83 PSIRLMLKLYLRRKLQNDNVIPSTTTDNYSL--VEALVARILFELIIWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDI 160 (456)
Q Consensus 83 ~~~~l~~R~l~~~~~~~~~~~~~~~~~~~~~--~~~L~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (456)
.......++........ ..+..+.. +..+....+ ..+ ....
T Consensus 104 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~------~~~-------------------------~~~~ 146 (482)
T KOG2084|consen 104 KLVGAPEECLALSSLHE------ESREAIVLLSLLEECSLSA------EKP-------------------------RLRL 146 (482)
T ss_pred hhccchHHHHHhhcCCc------cccchHHHHHHHHHhhhhc------ccc-------------------------cHhH
Confidence 00000111111111100 01111110 001111000 000 0000
Q ss_pred cHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHhhHhccccccccCCCC----cceeeeccccccccCCCcCCCeeEEeC
Q 012772 161 DEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELR----PLGTGLYPVISIINHSCLPNAVLVFEG 236 (456)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~N~~~i~~~~~~----~~g~glyp~~sl~NHSC~PN~~~~f~~ 236 (456)
......... ..............+.+..++..+..|++.+.+.... .+|.|+||..+++||||.||+...|++
T Consensus 147 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~hsC~pn~~~~~~~ 223 (482)
T KOG2084|consen 147 DLSYLEHGA---TEDDQSHLLLVLAADCISKLFPSLLCNSITNASSLRVPEPLFLGRGLFPGSSLFNHSCFPNISVIFDG 223 (482)
T ss_pred HHhhHHHHh---hHHhhccccchhHHHHHHHHHHHHHHhhhhhhhhhhccccccceeeecccchhcccCCCCCeEEEECC
Confidence 000000000 0000000000112234445555666666666665433 599999999999999999999999999
Q ss_pred CEEEEEEecCCCCCC-ccc--CCh------hhHHHhhCC--ccccCCCCCCCcc--------------------cCC---
Q 012772 237 RLAVVRAVQHVPKGA-EGQ--FDD------IQESAILEG--YRCKDDGCSGFLL--------------------RDS--- 282 (456)
Q Consensus 237 ~~~~vra~~~I~~Ge-e~~--~~~------~r~~~l~~~--f~C~C~~C~~~~~--------------------~~~--- 282 (456)
....+++...+.+++ +++ |.+ .|+..|... |.|.|++|.++-. +..
T Consensus 224 ~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~r~~~l~~~~~f~c~c~rc~d~~~~~~~~~~~~c~~~~~~~~~~~~~~~~ 303 (482)
T KOG2084|consen 224 RGLALLVPAGIDAGEEELTISYTDPLLSTASRQKQLRQSKLFSCQCPRCLDPTELGTFLSSLRCENCTCGGLLGTSFLDK 303 (482)
T ss_pred ceeEEEeecccCCCCCEEEEeecccccCHHHHHHHHhhccceeeecCCCCCCCccccchhhhhhcCCCCCCccCCCcccc
Confidence 999999999998887 543 443 266666543 8999999985311 011
Q ss_pred CCCCeeeccCCCcCCHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHH
Q 012772 283 DDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME 362 (456)
Q Consensus 283 ~~~~~~C~~C~~~~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~ 362 (456)
....|.|..|.......++.......... .+.. .+. ....+.+........+++|.........+..++..
T Consensus 304 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~----~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~il~~ 374 (482)
T KOG2084|consen 304 EDLQWPCTECALVRLKAYVVESREELQNE--LLDA---FSD----LLIEELLLLRQESLELPNDFEVLLLKLHLLFILGS 374 (482)
T ss_pred cCCCccccccccchhHHHHHHHHHHHHhh--cccc---CCh----hhhHHHHHHHHHhhhCcchHHHHHHHHHHHHHHHH
Confidence 12479999998876666555544333221 0011 111 11122333344456777776655555444444332
Q ss_pred ----------ccCHHHHHHHH--HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772 363 ----------LEDWKEALAYC--QLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS 430 (456)
Q Consensus 363 ----------~g~~~~A~~~~--~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h 430 (456)
.+.+..+..++ ...+.+++.+.|+.++..+...+.++.....+++...+++.......++....+.++
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (482)
T KOG2084|consen 375 LLGAFLSCSPNAELERLLNLFECRELLKALRDVKPGEEPLIAYLDYELGKLARELREKVLAEDALKDCKCIMCLARAEDL 454 (482)
T ss_pred HHhhhhccchhhHHHHHHHhhhhhHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHh
Confidence 34566777776 999999999999999999999999999999988888999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHh
Q 012772 431 PFMKELILKLEEAQAEASY 449 (456)
Q Consensus 431 ~~~~~~~~~l~~~~~e~~~ 449 (456)
.........+...+....+
T Consensus 455 ~~~~~~~~~~~~~~~~~~~ 473 (482)
T KOG2084|consen 455 DKLSEEEQELEEERSEEGP 473 (482)
T ss_pred hhhhHHHHHHhhhhhhhhh
Confidence 9888888887777766555
No 2
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.61 E-value=1.2e-14 Score=146.88 Aligned_cols=133 Identities=18% Similarity=0.273 Sum_probs=128.4
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 012772 314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 393 (456)
Q Consensus 314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~ 393 (456)
-|..+..++++.+|+.+|++++.+.+.++|+.|+.++.++.+|+.+|...|+|++|..+|++++.|+++++|..||.++.
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 66678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Q 012772 394 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE 446 (456)
Q Consensus 394 ~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e 446 (456)
.+.+++.++..++++++|.++|++|++|+...+|++|+.+..+..+|+.+..-
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~ 379 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLK 379 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988643
No 3
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.60 E-value=3.1e-14 Score=144.04 Aligned_cols=132 Identities=14% Similarity=0.139 Sum_probs=125.3
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 012772 314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 393 (456)
Q Consensus 314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~ 393 (456)
.+..+..+|+|+.|+.++++++++..+.+|-.|+.+..+..++|.+|..++++.+|+.+++++|.+++.++|++||.+|.
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~ 284 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA 284 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 55567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 012772 394 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA 445 (456)
Q Consensus 394 ~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~ 445 (456)
.+.+||.+|...|+++||..++++|++|.+..+|..||.+...+..++.+..
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~ 336 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQ 336 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998888777653
No 4
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.35 E-value=4.7e-12 Score=96.78 Aligned_cols=78 Identities=22% Similarity=0.335 Sum_probs=73.3
Q ss_pred CccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012772 346 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 424 (456)
Q Consensus 346 h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~ 424 (456)
|+.++.++.+++.+|..+|+|++|+.++++++.+ .+.+|++||.++..+++||.++..+|++++|++++++|++|.+.
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 7889999999999999999999999999999999 77889999999999999999999999999999999999999874
No 5
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.09 E-value=1.6e-10 Score=100.56 Aligned_cols=53 Identities=40% Similarity=0.571 Sum_probs=44.6
Q ss_pred cccCCCCcceeeeccccccccCCCcCCCeeEEe----CCEEEEEEecCCCCCCcccC
Q 012772 203 ICNSELRPLGTGLYPVISIINHSCLPNAVLVFE----GRLAVVRAVQHVPKGAEGQF 255 (456)
Q Consensus 203 i~~~~~~~~g~glyp~~sl~NHSC~PN~~~~f~----~~~~~vra~~~I~~Gee~~~ 255 (456)
.........+.++||.++++||||.|||.+.|+ ++.++++|.|||++||||++
T Consensus 103 ~~~~~~~~~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i 159 (162)
T PF00856_consen 103 RSFSEDDRDGIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFI 159 (162)
T ss_dssp EEETTEEEEEEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEE
T ss_pred cccccccccccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEE
Confidence 333444578999999999999999999999998 78999999999999999864
No 6
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....
Probab=98.95 E-value=1.9e-10 Score=73.86 Aligned_cols=37 Identities=46% Similarity=1.232 Sum_probs=32.7
Q ss_pred CcCcCCCCCCccCcCCCCcccccHHhhhhcHHHhHHhc
Q 012772 30 CDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67 (456)
Q Consensus 30 C~~C~~~~~~~~C~~C~~v~yCs~~C~~~~~~~H~~EC 67 (456)
|++|+++ .+.+|++|+.|+|||++||+.+|..|+.||
T Consensus 1 C~~C~~~-~~~~C~~C~~~~YCs~~Cq~~~w~~Hk~~C 37 (37)
T PF01753_consen 1 CAVCGKP-ALKRCSRCKSVYYCSEECQRADWPYHKFEC 37 (37)
T ss_dssp -TTTSSC-SSEEETTTSSSEESSHHHHHHHHHHHCCTH
T ss_pred CcCCCCC-cCCcCCCCCCEEecCHHHHHHHHHHHhhhC
Confidence 7889886 444999999999999999999999999987
No 7
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.92 E-value=3e-08 Score=87.65 Aligned_cols=126 Identities=16% Similarity=0.037 Sum_probs=102.1
Q ss_pred HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772 309 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 388 (456)
Q Consensus 309 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~h 388 (456)
......+..+...|++++|+..+++++.+ .|++.....++.+++.++...|++++|++++++++.+.. .++..|
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l-----~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~~~ 109 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRL-----EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQAL 109 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHH
Confidence 33445566677889999999999999765 345556677899999999999999999999999998733 344557
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 012772 389 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL 440 (456)
Q Consensus 389 p~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l 440 (456)
..+|..+.++|.++..+|++++|+..+.+|+.+++..+|.+|+.+..+...|
T Consensus 110 ~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~ 161 (168)
T CHL00033 110 NNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWL 161 (168)
T ss_pred HHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 7777788888888879999999999999999999999999996665544433
No 8
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=98.77 E-value=3.6e-09 Score=86.99 Aligned_cols=44 Identities=32% Similarity=0.434 Sum_probs=38.2
Q ss_pred eeccccccccCCCcCCCeeEEe--CC--EEEEEEecCCCCCCcccCCh
Q 012772 214 GLYPVISIINHSCLPNAVLVFE--GR--LAVVRAVQHVPKGAEGQFDD 257 (456)
Q Consensus 214 glyp~~sl~NHSC~PN~~~~f~--~~--~~~vra~~~I~~Gee~~~~~ 257 (456)
.++|.++++||||.||+...+. ++ .+.++|+|+|++||||++++
T Consensus 69 ~~~~~~~~iNHsc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 69 RKGNIARFINHSCEPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred ccCcHHHeeCCCCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence 3789999999999999998875 33 69999999999999998653
No 9
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.74 E-value=2.2e-07 Score=76.41 Aligned_cols=115 Identities=14% Similarity=0.058 Sum_probs=95.5
Q ss_pred HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772 309 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 388 (456)
Q Consensus 309 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~h 388 (456)
+.....+..+..+|++++|++.+++++.. +|+++....+...++.++...|++++|+.++++++.. .+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-----YPKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----CCCC
Confidence 34556667777899999999999888642 5777777888899999999999999999999998853 2677
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 012772 389 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELIL 438 (456)
Q Consensus 389 p~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~ 438 (456)
+.....++.+|.++..+|++++|.+++.++++. .|+++.+.+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~ 117 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKR-----YPGSSAAKLAQK 117 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH-----CcCChhHHHHHh
Confidence 777888999999999999999999999999887 577777665543
No 10
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.67 E-value=1.3e-07 Score=71.89 Aligned_cols=73 Identities=18% Similarity=0.266 Sum_probs=65.1
Q ss_pred HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 012772 309 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR 382 (456)
Q Consensus 309 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~ 382 (456)
..+...+..+..+|++++|++.+++++.+ .+.+|+.|+.++.++.+++.++..+|++++|+++++++++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 34455667788899999999999999999 77889999999999999999999999999999999999999875
No 11
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.54 E-value=4.3e-06 Score=71.80 Aligned_cols=112 Identities=12% Similarity=0.092 Sum_probs=90.1
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 012772 310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 389 (456)
Q Consensus 310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp 389 (456)
.....+..+...|++++|+..+++++.+ +|.-..++..++.++..+|++++|+..+++++.+ .|
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--------~p 89 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--------DA 89 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CC
Confidence 3445567778899999999999988643 3344677889999999999999999999999853 45
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 012772 390 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE 442 (456)
Q Consensus 390 ~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~ 442 (456)
.-+..++++|.++..+|++++|++.|++|++ ..|+++...........
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~-----~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIK-----MSYADASWSEIRQNAQI 137 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHH
Confidence 5677899999999999999999999999987 45777776655544433
No 12
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=98.50 E-value=2.1e-07 Score=61.39 Aligned_cols=42 Identities=21% Similarity=0.177 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCch
Q 012772 391 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF 432 (456)
Q Consensus 391 ~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~ 432 (456)
++..+++||.+|..+|++++|++++++|++|.+..+|++||.
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 477899999999999999999999999999999999999994
No 13
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.49 E-value=2.2e-06 Score=76.02 Aligned_cols=129 Identities=15% Similarity=0.104 Sum_probs=93.9
Q ss_pred HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772 309 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 388 (456)
Q Consensus 309 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~h 388 (456)
......+..+...|++++|+..+++++... |++.....++.+++.++..+|++++|+.++++++.+... .+..+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~ 109 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSAL 109 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHH
Confidence 344556666778899999999999987653 334445678899999999999999999999999875211 11122
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 012772 389 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 443 (456)
Q Consensus 389 p~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~ 443 (456)
..+|..+..+|.....+|++++|+..+++|+++++...+.++..+.++..-+..+
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 164 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLKTT 164 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhc
Confidence 2334444444444445667899999999999999999998888877776665543
No 14
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.44 E-value=1.9e-05 Score=67.54 Aligned_cols=113 Identities=12% Similarity=0.093 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 012772 306 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP 385 (456)
Q Consensus 306 ~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g 385 (456)
+.++.+...|..+..+|++++|+.+|+-+..+ ++.-..-+.+|+.++..+|+|++|++.|.+++. +.
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~-----L~ 99 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ-----IK 99 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-----cC
Confidence 45677778888899999999999998876532 344567778999999999999999999999884 44
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 012772 386 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILK 439 (456)
Q Consensus 386 ~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~ 439 (456)
+++|. .++++|..++..|+.++|++.++.|+..-. ++|....+..+
T Consensus 100 ~ddp~---~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~-----~~~~~~~l~~~ 145 (157)
T PRK15363 100 IDAPQ---APWAAAECYLACDNVCYAIKALKAVVRICG-----EVSEHQILRQR 145 (157)
T ss_pred CCCch---HHHHHHHHHHHcCCHHHHHHHHHHHHHHhc-----cChhHHHHHHH
Confidence 56654 689999999999999999999999998873 55655555444
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.44 E-value=1.7e-06 Score=87.12 Aligned_cols=111 Identities=21% Similarity=0.223 Sum_probs=86.0
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772 313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 392 (456)
Q Consensus 313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~ 392 (456)
..|.++.+.|+..+|+..|.+++.+. |+| ++++++|+.+|.++|.+++|..++++++++ .|..+
T Consensus 325 NlanALkd~G~V~ea~~cYnkaL~l~-----p~h---adam~NLgni~~E~~~~e~A~~ly~~al~v--------~p~~a 388 (966)
T KOG4626|consen 325 NLANALKDKGSVTEAVDCYNKALRLC-----PNH---ADAMNNLGNIYREQGKIEEATRLYLKALEV--------FPEFA 388 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhC-----Ccc---HHHHHHHHHHHHHhccchHHHHHHHHHHhh--------Chhhh
Confidence 45556677899999999999988643 444 567789999999999999999999998864 56778
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 012772 393 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA 447 (456)
Q Consensus 393 ~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~ 447 (456)
...++||.+|..+|++++|+..|++|++| .|..++.+.++.-...|+
T Consensus 389 aa~nNLa~i~kqqgnl~~Ai~~YkealrI--------~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 389 AAHNNLASIYKQQGNLDDAIMCYKEALRI--------KPTFADALSNMGNTYKEM 435 (966)
T ss_pred hhhhhHHHHHHhcccHHHHHHHHHHHHhc--------CchHHHHHHhcchHHHHh
Confidence 88999999999999999999999999887 344455554444444333
No 16
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=98.40 E-value=1.2e-06 Score=95.56 Aligned_cols=126 Identities=18% Similarity=0.173 Sum_probs=114.1
Q ss_pred hhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q 012772 317 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY 396 (456)
Q Consensus 317 ~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~ 396 (456)
....+|.+.++.+ .-+.+.+...+++--|+.+++.+..|+.++..+|+.++|+.+.+++.-+.+++.|.+||.+...+.
T Consensus 941 ~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 941 EALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Confidence 3445678888877 666777888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 012772 397 TCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 443 (456)
Q Consensus 397 ~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~ 443 (456)
+|+...+...+...|...+.+|+.+....+|++||.+..+..+++.+
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l 1066 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELL 1066 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHH
Confidence 99999999999999999999999999999999999998776555555
No 17
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=98.39 E-value=5.7e-07 Score=59.31 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH
Q 012772 349 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 390 (456)
Q Consensus 349 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~ 390 (456)
++.++++|+.+|..+|+|++|+.++++++.++++++|++||+
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 467889999999999999999999999999999999999995
No 18
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.32 E-value=1.4e-05 Score=79.26 Aligned_cols=106 Identities=18% Similarity=0.216 Sum_probs=86.6
Q ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH
Q 012772 311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 390 (456)
Q Consensus 311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~ 390 (456)
+..+|..+...|+|++|++.|++++++ .|.+ ..++.+++.+|..+|++++|+..+++++.+ .|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~-----~P~~---~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL-----DPNN---AELYADRAQANIKLGNFTEAVADANKAIEL--------DPS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence 455677777889999999999999763 4544 457789999999999999999999999875 344
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHH
Q 012772 391 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELI 437 (456)
Q Consensus 391 ~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~ 437 (456)
.+..++.+|.++..+|++++|+..|++|+++ .|+++.....+
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l-----~P~~~~~~~~l 110 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGASL-----APGDSRFTKLI 110 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCHHHHHHH
Confidence 4567899999999999999999999999974 46676665444
No 19
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.31 E-value=1.6e-05 Score=75.19 Aligned_cols=107 Identities=14% Similarity=0.101 Sum_probs=88.5
Q ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 012772 319 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC 398 (456)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~L 398 (456)
..+|+|++|+..|+.++.. +|++.+...+++.+|.+|...|++++|+.++++++..+ |+||.....++++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~-----yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~s~~~~dAl~kl 223 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK-----YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PKSPKAADAMFKV 223 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH-----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCcchhHHHHHH
Confidence 3468999999998888753 58888889999999999999999999999998887543 6899999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 012772 399 GKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL 440 (456)
Q Consensus 399 a~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l 440 (456)
|.++..+|++++|.+.|+++++.+ |+++........|
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~y-----P~s~~a~~A~~rL 260 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKY-----PGTDGAKQAQKRL 260 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-----cCCHHHHHHHHHH
Confidence 999999999999999999876543 4555554444444
No 20
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.30 E-value=7.4e-06 Score=82.71 Aligned_cols=113 Identities=16% Similarity=0.209 Sum_probs=87.7
Q ss_pred HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 012772 308 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 387 (456)
Q Consensus 308 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~ 387 (456)
.+++...+..+.++|++++|..+|+.+++. .+..+.+.++|+.+|.++|++++|+..|+.+|.|
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~v--------~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI-------- 417 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALEV--------FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI-------- 417 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhh--------ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--------
Confidence 355667777788889999999988888754 4567788889999999999999999999888854
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 012772 388 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 444 (456)
Q Consensus 388 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~ 444 (456)
.|..|..|.++|.+|-.+|+..+|+..|.+|+.| .|..++.-.+|+.+.
T Consensus 418 ~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--------nPt~AeAhsNLasi~ 466 (966)
T KOG4626|consen 418 KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--------NPTFAEAHSNLASIY 466 (966)
T ss_pred CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--------CcHHHHHHhhHHHHh
Confidence 6777888888888888888888888888888775 345555555555554
No 21
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=98.29 E-value=4.2e-07 Score=85.64 Aligned_cols=75 Identities=23% Similarity=0.365 Sum_probs=51.7
Q ss_pred hccccccccCCCCcceeeecc-ccccccCCCcCCCeeEEeC-CEEEEEEecCCCCCCccc--CChhhHHHhh-CCccccC
Q 012772 197 ACNAHTICNSELRPLGTGLYP-VISIINHSCLPNAVLVFEG-RLAVVRAVQHVPKGAEGQ--FDDIQESAIL-EGYRCKD 271 (456)
Q Consensus 197 ~~N~~~i~~~~~~~~g~glyp-~~sl~NHSC~PN~~~~f~~-~~~~vra~~~I~~Gee~~--~~~~r~~~l~-~~f~C~C 271 (456)
.-|.|.|.=+.-.. -.-|+. -++++||+|.|||..+-.| .++.|+++|||.+||||| |... ..- +.-.|.|
T Consensus 175 g~nDFSvmyStRk~-caqLwLGPaafINHDCrpnCkFvs~g~~tacvkvlRDIePGeEITcFYgs~---fFG~~N~~CeC 250 (453)
T KOG2589|consen 175 GGNDFSVMYSTRKR-CAQLWLGPAAFINHDCRPNCKFVSTGRDTACVKVLRDIEPGEEITCFYGSG---FFGENNEECEC 250 (453)
T ss_pred cCCceeeeeecccc-hhhheeccHHhhcCCCCCCceeecCCCceeeeehhhcCCCCceeEEeeccc---ccCCCCceeEE
Confidence 46788886432111 123443 4678999999999987766 789999999999999997 4421 000 1236888
Q ss_pred CCCC
Q 012772 272 DGCS 275 (456)
Q Consensus 272 ~~C~ 275 (456)
..|.
T Consensus 251 ~TCE 254 (453)
T KOG2589|consen 251 VTCE 254 (453)
T ss_pred eecc
Confidence 8886
No 22
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.28 E-value=8.5e-06 Score=75.94 Aligned_cols=118 Identities=19% Similarity=0.253 Sum_probs=92.3
Q ss_pred HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 012772 308 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 387 (456)
Q Consensus 308 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~ 387 (456)
.+++-.+..+++..++|++|+..|.++++ |-|.|..+.. +=+.+|.++|.++.|++-|+.+|. .
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~-----l~P~nAVyyc---NRAAAy~~Lg~~~~AVkDce~Al~--------i 144 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIE-----LDPTNAVYYC---NRAAAYSKLGEYEDAVKDCESALS--------I 144 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHh-----cCCCcchHHH---HHHHHHHHhcchHHHHHHHHHHHh--------c
Confidence 34444556666777899999999999976 4577766544 557899999999999999999995 5
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHh
Q 012772 388 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY 449 (456)
Q Consensus 388 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~~~ 449 (456)
.|.....|-.||.+|..+|++++|+..|+||++| -|+.+.++ ..|.-++..+..
T Consensus 145 Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel-----dP~Ne~~K---~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 145 DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL-----DPDNESYK---SNLKIAEQKLNE 198 (304)
T ss_pred ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc-----CCCcHHHH---HHHHHHHHHhcC
Confidence 7888899999999999999999999999999985 45555444 555555554443
No 23
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.27 E-value=3.3e-05 Score=65.17 Aligned_cols=109 Identities=20% Similarity=0.303 Sum_probs=85.4
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 012772 310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 389 (456)
Q Consensus 310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp 389 (456)
.+...+..+..+|++++|++.+++++.. +|.+ ..++..++.++..+|++++|..++++++.+ +|
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p 82 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAY-----DPYN---SRYWLGLAACCQMLKEYEEAIDAYALAAAL--------DP 82 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CC
Confidence 3455666677889999999998887653 3443 567788999999999999999999988764 35
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 012772 390 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILK 439 (456)
Q Consensus 390 ~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~ 439 (456)
.....++.+|.++...|++++|++.++++++. .|+.+....+...
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~ 127 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEI-----CGENPEYSELKER 127 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----ccccchHHHHHHH
Confidence 56777899999999999999999999999985 3555555444443
No 24
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=98.24 E-value=2.8e-05 Score=71.06 Aligned_cols=136 Identities=15% Similarity=0.221 Sum_probs=99.7
Q ss_pred CCeeeccCCCcCCHH--------HHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHH
Q 012772 285 KGFTCQQCGLVRSKE--------EIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKL 356 (456)
Q Consensus 285 ~~~~C~~C~~~~~~~--------~~~~~~~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L 356 (456)
..|.|+.||-..... +.+.+.+.+.... ....+.....+++|++.|+-++-. -.+.+..+...+.+.-.+
T Consensus 47 ~V~vCP~CgyA~~~~~F~~l~~~~~~~i~~~i~~~~-~~~~~~~~Rt~~~ai~~YkLAll~-~~~~~~~~s~~A~l~Lrl 124 (214)
T PF09986_consen 47 EVWVCPHCGYAAFEEDFEKLSPEQKEKIKENISSRW-KPRDFSGERTLEEAIESYKLALLC-AQIKKEKPSKKAGLCLRL 124 (214)
T ss_pred eEEECCCCCCcccccccccCCHHHHHHHHHHHHhhc-ccCCCCCCCCHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHH
Confidence 358899999654332 2333322222221 111344455789999999888754 456677777899999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCCC-----ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772 357 IKILMELEDWKEALAYCQLTIPVYQRVYPQF-----HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 422 (456)
Q Consensus 357 ~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~-----hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~ 422 (456)
|-+|..+|+-++...+.++++..|+..|-.+ --.-...++-+|.++...|++++|.+++.+.+..-
T Consensus 125 AWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 125 AWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 9999999999999999999999998877532 22446788899999999999999999998877643
No 25
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.17 E-value=3.9e-05 Score=71.46 Aligned_cols=115 Identities=20% Similarity=0.237 Sum_probs=90.8
Q ss_pred HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772 309 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 388 (456)
Q Consensus 309 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~h 388 (456)
......+..+...|++++|+..+++++. ..|.++....++..++.++..+|+|++|+..+++++.. + |++
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~----~-p~~ 103 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALES-----RYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL----H-PNH 103 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----C-cCC
Confidence 3445666677788999999999888864 45788888888999999999999999999999999853 2 467
Q ss_pred hHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 012772 389 PLLGLQYYTCGKLEWFL--------GDTENAIKSMTEAVEILRITHGTNSPFMKELIL 438 (456)
Q Consensus 389 p~~~~~l~~La~~~~~~--------g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~ 438 (456)
|.....++.+|.++... |++++|.+.+++++.. -|+++.....+.
T Consensus 104 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~a~~ 156 (235)
T TIGR03302 104 PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR-----YPNSEYAPDAKK 156 (235)
T ss_pred CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-----CCCChhHHHHHH
Confidence 77777889999998876 7888999999888754 455655544443
No 26
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.16 E-value=1.1e-05 Score=62.28 Aligned_cols=83 Identities=20% Similarity=0.235 Sum_probs=61.8
Q ss_pred cCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 012772 321 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK 400 (456)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~ 400 (456)
+|++++|+..++++++.. |.++ -......+|.+|..+|+|++|+.++++ +.. .+.+ ....+.+|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~-----~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~-----~~~~---~~~~~l~a~ 66 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELD-----PTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL-----DPSN---PDIHYLLAR 66 (84)
T ss_dssp TT-HHHHHHHHHHHHHHH-----CGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH-----HHCH---HHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHC-----CCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC-----CCCC---HHHHHHHHH
Confidence 689999999999998754 3232 334556689999999999999999988 221 1222 344445699
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 012772 401 LEWFLGDTENAIKSMTEA 418 (456)
Q Consensus 401 ~~~~~g~~~eA~~~l~~A 418 (456)
.+..+|++++|++.|++|
T Consensus 67 ~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 67 CLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHTT-HHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHhcC
Confidence 999999999999999986
No 27
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.16 E-value=4.1e-05 Score=73.57 Aligned_cols=130 Identities=16% Similarity=0.128 Sum_probs=98.4
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772 313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 392 (456)
Q Consensus 313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~ 392 (456)
+.|..+...|+|++|.+.|.++.....+ + .+....+..+..++.+|.+. ++++|++++++++.+|... +.....|
T Consensus 40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~-~-~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~--G~~~~aA 114 (282)
T PF14938_consen 40 KAANCFKLAKDWEKAAEAYEKAADCYEK-L-GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA--GRFSQAA 114 (282)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHH-T-T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC--T-HHHHH
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHH-c-CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc--CcHHHHH
Confidence 3444566778999999999999888776 3 33455778888888888777 9999999999999998743 5566678
Q ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHh
Q 012772 393 LQYYTCGKLEWFL-GDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY 449 (456)
Q Consensus 393 ~~l~~La~~~~~~-g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~~~ 449 (456)
..+.++|.+|... |++++|+++|++|+++++.. | ......+.+.+++.+..++..
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e-~-~~~~a~~~~~~~A~l~~~l~~ 170 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE-G-SPHSAAECLLKAADLYARLGR 170 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT-T--HHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC-C-ChhhHHHHHHHHHHHHHHhCC
Confidence 8999999999998 99999999999999999997 2 223345566777777655443
No 28
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.10 E-value=2.1e-05 Score=58.03 Aligned_cols=64 Identities=28% Similarity=0.431 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Q 012772 350 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLG-DTENAIKSMTEAVEI 421 (456)
Q Consensus 350 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g-~~~eA~~~l~~Al~i 421 (456)
+.++..+|..+..+|+|++|+.++.+++.+ +|.-+..++++|.++..+| ++++|++.+++|+++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 456788999999999999999999999975 4666779999999999999 799999999999975
No 29
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.05 E-value=0.00028 Score=66.08 Aligned_cols=126 Identities=17% Similarity=0.190 Sum_probs=95.0
Q ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH
Q 012772 311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 390 (456)
Q Consensus 311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~ 390 (456)
....|......|++++|++.|++++. ..|..+....+...++.+|..++++++|+.++++.+.. -|+||.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~-----~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~-----~P~~~~ 104 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDN-----RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPTHPN 104 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CcCCCc
Confidence 45566667788999999999998865 46788888889999999999999999999999998753 378999
Q ss_pred HHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Q 012772 391 LGLQYYTCGKLEWFLG---------------DTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS 448 (456)
Q Consensus 391 ~~~~l~~La~~~~~~g---------------~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~~ 448 (456)
+...++.+|..+..++ +...+.+.+..--+++.. | |+++...+....|..++..+.
T Consensus 105 ~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~-y-P~S~ya~~A~~rl~~l~~~la 175 (243)
T PRK10866 105 IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG-Y-PNSQYTTDATKRLVFLKDRLA 175 (243)
T ss_pred hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH-C-cCChhHHHHHHHHHHHHHHHH
Confidence 9999999998865554 222233333333333333 3 488888888888888876544
No 30
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.02 E-value=0.00059 Score=62.15 Aligned_cols=131 Identities=20% Similarity=0.194 Sum_probs=93.0
Q ss_pred HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 012772 308 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 387 (456)
Q Consensus 308 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~ 387 (456)
...+...|.....+|+|.+|++.++++... .|+++....+...++.++...|+|++|+..+++.+.. + |.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~-----~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~----y-P~ 74 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDR-----YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL----Y-PN 74 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------TT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----C-CC
Confidence 345677788888999999999999988653 6889999999999999999999999999999988753 3 57
Q ss_pred ChHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHH--hcCCCCchHHHHHHHHHHHHHHHH
Q 012772 388 HPLLGLQYYTCGKLEWFLGDT----ENAIKSMTEAVEILRI--THGTNSPFMKELILKLEEAQAEAS 448 (456)
Q Consensus 388 hp~~~~~l~~La~~~~~~g~~----~eA~~~l~~Al~i~~~--~~G~~h~~~~~~~~~l~~~~~e~~ 448 (456)
||.+...++.+|..+..+.+- +.-.+..++|+..++. .-=|+++.+.+....|.+++..+-
T Consensus 75 ~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la 141 (203)
T PF13525_consen 75 SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLA 141 (203)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHH
Confidence 899999999999987765311 1111222233222221 123789999998888888876543
No 31
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.01 E-value=0.00011 Score=63.18 Aligned_cols=93 Identities=20% Similarity=0.141 Sum_probs=53.4
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772 313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 392 (456)
Q Consensus 313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~ 392 (456)
..|..+..+|++++|+..|+.++.. .|+......+...|+.++..+|+|++|+..+.. .+..+..+
T Consensus 53 ~lA~~~~~~g~~~~A~~~l~~~~~~-----~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~---------~~~~~~~~ 118 (145)
T PF09976_consen 53 QLAKAAYEQGDYDEAKAALEKALAN-----APDPELKPLARLRLARILLQQGQYDEALATLQQ---------IPDEAFKA 118 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh---------ccCcchHH
Confidence 3445555666777776666666542 123333334445566666667777666666533 12334445
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012772 393 LQYYTCGKLEWFLGDTENAIKSMTEAV 419 (456)
Q Consensus 393 ~~l~~La~~~~~~g~~~eA~~~l~~Al 419 (456)
....-+|.++..+|++++|+..|++|+
T Consensus 119 ~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 119 LAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 555566777777777777777666663
No 32
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.00 E-value=0.00011 Score=66.99 Aligned_cols=61 Identities=18% Similarity=0.194 Sum_probs=26.8
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772 354 EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 420 (456)
Q Consensus 354 ~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~ 420 (456)
.+++.++..+|++++|+.++++++.. +.++.....++.+|.++...|++++|..++.++++
T Consensus 103 ~~~~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 103 NNYGTFLCQQGKYEQAMQQFEQAIED------PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ 163 (234)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc------cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444444444444321 11233333444445555555555555555555444
No 33
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.98 E-value=8.7e-05 Score=66.79 Aligned_cols=94 Identities=12% Similarity=0.059 Sum_probs=55.2
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 012772 310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 389 (456)
Q Consensus 310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp 389 (456)
..++.+..+.++|++..|.+-++++++. +|....++..++.+|..+|+.+.|.+.+++++. .+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--------l~p 100 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALS--------LAP 100 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--------cCC
Confidence 3455566677777777777777766643 333344455566666666666666666666653 345
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012772 390 LLGLQYYTCGKLEWFLGDTENAIKSMTEAV 419 (456)
Q Consensus 390 ~~~~~l~~La~~~~~~g~~~eA~~~l~~Al 419 (456)
.-|..++|.|-.+..+|++++|...|++|+
T Consensus 101 ~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al 130 (250)
T COG3063 101 NNGDVLNNYGAFLCAQGRPEEAMQQFERAL 130 (250)
T ss_pred CccchhhhhhHHHHhCCChHHHHHHHHHHH
Confidence 555555555555555555555555555554
No 34
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.94 E-value=0.00027 Score=58.28 Aligned_cols=100 Identities=20% Similarity=0.192 Sum_probs=79.8
Q ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH
Q 012772 311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 390 (456)
Q Consensus 311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~ 390 (456)
.++.|..+...|+.++|+.+|+++++ .|.......+++..++..+..+|++++|+...++.+. -+|.+. .
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~-----~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~----~~p~~~-~ 73 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALA-----AGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE----EFPDDE-L 73 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCcc-c
Confidence 35667778889999999999999975 3566667788999999999999999999999998764 234322 2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772 391 LGLQYYTCGKLEWFLGDTENAIKSMTEAVE 420 (456)
Q Consensus 391 ~~~~l~~La~~~~~~g~~~eA~~~l~~Al~ 420 (456)
.+..-..+|.++.++|+.+||+..+-+++.
T Consensus 74 ~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 74 NAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344445578899999999999999888775
No 35
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.93 E-value=6.9e-05 Score=54.54 Aligned_cols=59 Identities=22% Similarity=0.351 Sum_probs=52.9
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 355 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 355 ~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
.+|..+...|+|++|+..+++++. .+|.-...++.+|.++..+|++++|+.+|++++++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 578899999999999999999884 56889999999999999999999999999999864
No 36
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=97.90 E-value=6e-05 Score=82.57 Aligned_cols=131 Identities=12% Similarity=0.060 Sum_probs=117.7
Q ss_pred HHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q 012772 315 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 394 (456)
Q Consensus 315 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~ 394 (456)
|..+...|++++|+....++.-+.++++|-+|+.+...+.+++......+....|+....+++.+....+|++||.++..
T Consensus 980 a~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~ 1059 (1236)
T KOG1839|consen 980 AKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALS 1059 (1236)
T ss_pred HHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhh
Confidence 34455678899999988888888899999999999999999999888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 012772 395 YYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA 445 (456)
Q Consensus 395 l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~ 445 (456)
..+++.++...++++-|+.+++.|+++-...+|+.+-.+......++++..
T Consensus 1060 ~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~ 1110 (1236)
T KOG1839|consen 1060 FINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFE 1110 (1236)
T ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHh
Confidence 999999999999999999999999999999999999877776666665543
No 37
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.88 E-value=0.00049 Score=62.76 Aligned_cols=93 Identities=11% Similarity=0.116 Sum_probs=74.6
Q ss_pred HHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q 012772 315 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 394 (456)
Q Consensus 315 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~ 394 (456)
+..+...|++++|++.+++++.. +.++........++.++...|++++|.+++.+++.. .+.+ ...
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~---~~~ 171 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIED------PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI-----DPQR---PES 171 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhc------cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcCC---hHH
Confidence 34456679999999999988752 223444566788999999999999999999998864 2233 446
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 395 YYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 395 l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
+..+|.++...|++++|..++++++++
T Consensus 172 ~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 172 LLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 778999999999999999999999987
No 38
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.84 E-value=0.00035 Score=58.83 Aligned_cols=88 Identities=20% Similarity=0.250 Sum_probs=75.1
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 012772 310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 389 (456)
Q Consensus 310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp 389 (456)
.+..+|......|+|++|++.++.+.. -.|..+..-++...|+.+|...++|++|+..+++.+. +-|.||
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~-----ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir-----LhP~hp 81 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDT-----RYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR-----LHPTHP 81 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh-----cCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCCC
Confidence 445666677788999999998887754 4588888889999999999999999999999998874 568999
Q ss_pred HHHHHHHHHHHHHHHcCC
Q 012772 390 LLGLQYYTCGKLEWFLGD 407 (456)
Q Consensus 390 ~~~~~l~~La~~~~~~g~ 407 (456)
.+...++..|..+..+..
T Consensus 82 ~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 82 NVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred CccHHHHHHHHHHHHHhh
Confidence 999999999999888764
No 39
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=97.80 E-value=1.2e-05 Score=87.35 Aligned_cols=41 Identities=32% Similarity=0.531 Sum_probs=34.5
Q ss_pred ccccccCCCcCCCeeE---EeC-CEEEEEEecCCCCCCcccCChh
Q 012772 218 VISIINHSCLPNAVLV---FEG-RLAVVRAVQHVPKGAEGQFDDI 258 (456)
Q Consensus 218 ~~sl~NHSC~PN~~~~---f~~-~~~~vra~~~I~~Gee~~~~~~ 258 (456)
.+.++||||.|||... .+| .+|+|.|.|+|++||||||+|.
T Consensus 939 iAr~InHsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYk 983 (1005)
T KOG1080|consen 939 IARFINHSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYK 983 (1005)
T ss_pred hhheeecccCCCceeeEEEecCeeEEEEEEecccccCceeeeecc
Confidence 3578999999999664 334 5799999999999999999873
No 40
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=97.80 E-value=6.5e-06 Score=75.55 Aligned_cols=44 Identities=36% Similarity=0.890 Sum_probs=40.6
Q ss_pred CccCcCcCCCCCCccCcCCCCcccccHHhhhhcHHHhHHhchhh
Q 012772 27 ISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVL 70 (456)
Q Consensus 27 ~~~C~~C~~~~~~~~C~~C~~v~yCs~~C~~~~~~~H~~EC~~l 70 (456)
..+|..|..+.+-.+|+.|+.|.||+++||+-+|..|+--|+.+
T Consensus 319 ~~fCstCG~~ga~KrCs~CKav~YCdqeCQk~hWf~HKK~C~~L 362 (396)
T KOG1710|consen 319 CQFCSTCGHPGAKKRCSQCKAVAYCDQECQKFHWFIHKKVCSFL 362 (396)
T ss_pred cccccccCCCCccchhhhhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 46788888888889999999999999999999999999999977
No 41
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.78 E-value=0.00012 Score=64.57 Aligned_cols=84 Identities=13% Similarity=-0.066 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 012772 349 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT 428 (456)
Q Consensus 349 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~ 428 (456)
....+..++..+..+|++++|+.++++++.+ .++++..+..++++|.++...|++++|++.+++|+.+.. .++.
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l-----~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~ 107 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRL-----EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQ 107 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHH
Confidence 4677788999999999999999999999876 246677888999999999999999999999999998732 2333
Q ss_pred CCchHHHHHH
Q 012772 429 NSPFMKELIL 438 (456)
Q Consensus 429 ~h~~~~~~~~ 438 (456)
.+..+..+..
T Consensus 108 ~~~~la~i~~ 117 (168)
T CHL00033 108 ALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 42
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.78 E-value=0.00013 Score=55.72 Aligned_cols=93 Identities=20% Similarity=0.275 Sum_probs=72.8
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772 313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 392 (456)
Q Consensus 313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~ 392 (456)
..+..+..+|++++|+..++++++. .|.+. .+...++.++...|++++|.+++++++.. . +.++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~--- 68 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALEL-----DPDNA---DAYYNLAAAYYKLGKYEEALEDYEKALEL----D-PDNA--- 68 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhc-----CCccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhC----C-Ccch---
Confidence 3444556679999999988888653 23333 66788999999999999999999988763 2 2222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 393 LQYYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 393 ~~l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
..++.+|.++..+|++++|.+++.+++++
T Consensus 69 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 69 KAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 67889999999999999999999988764
No 43
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.77 E-value=0.0003 Score=75.40 Aligned_cols=94 Identities=11% Similarity=0.083 Sum_probs=69.3
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772 312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 391 (456)
Q Consensus 312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~ 391 (456)
...+..+...|++++|+..++++++. .|++ ..++..++.++..+|++++|+.++++++.+ .|..
T Consensus 369 ~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--------~P~~ 432 (615)
T TIGR00990 369 IKRASMNLELGDPDKAEEDFDKALKL-----NSED---PDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--------DPDF 432 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CccC
Confidence 34555566778888888888877653 3444 356677888888888888888888888754 3444
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
...+.+||.++..+|++++|+..+++|+.+
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 556778888888888888888888888764
No 44
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.76 E-value=0.0004 Score=67.19 Aligned_cols=94 Identities=14% Similarity=0.129 Sum_probs=74.5
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772 312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 391 (456)
Q Consensus 312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~ 391 (456)
...+..+...|++++|+..|++++++ .|++ ..++..++.++..+|++++|++.+.+++.+ .|.-
T Consensus 68 ~~~g~~~~~~g~~~~A~~~~~~Al~l-----~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~ 131 (296)
T PRK11189 68 YERGVLYDSLGLRALARNDFSQALAL-----RPDM---ADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--------DPTY 131 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHc-----CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCC
Confidence 34555566789999999988888753 3444 567788999999999999999999988863 3444
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
...+.++|.++...|++++|++.+++++++
T Consensus 132 ~~a~~~lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 132 NYAYLNRGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 557888999999999999999999998874
No 45
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.75 E-value=0.00032 Score=65.07 Aligned_cols=100 Identities=18% Similarity=0.126 Sum_probs=86.3
Q ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH
Q 012772 311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 390 (456)
Q Consensus 311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~ 390 (456)
+.+.|-.+...|+|.+|...|+..+.. .|+...+.++++.|++.+..+|+|++|...+..+..- -|.||-
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-----~P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-----YPKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-----CCCCCC
Confidence 455666677789999999988877653 5999999999999999999999999999999887652 267888
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772 391 LGLQYYTCGKLEWFLGDTENAIKSMTEAVE 420 (456)
Q Consensus 391 ~~~~l~~La~~~~~~g~~~eA~~~l~~Al~ 420 (456)
.--.|++||.++..+|+.++|...|++...
T Consensus 214 ApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 888999999999999999999999987654
No 46
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.73 E-value=0.00043 Score=66.51 Aligned_cols=105 Identities=17% Similarity=0.163 Sum_probs=80.1
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772 314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-EDWKEALAYCQLTIPVYQRVYPQFHPLLG 392 (456)
Q Consensus 314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~-g~~~~A~~~~~~~l~~~e~~~g~~hp~~~ 392 (456)
.|......+++++|++.++++..++... -.....+.++..+|.+|... |++++|++++++++++|+.-- ......
T Consensus 80 ~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~--G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~ 155 (282)
T PF14938_consen 80 EAANCYKKGDPDEAIECYEKAIEIYREA--GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAA 155 (282)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHC--T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHH
Confidence 3334445569999999999999887542 12334588899999999998 999999999999999998642 334455
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772 393 LQYYTCGKLEWFLGDTENAIKSMTEAVEIL 422 (456)
Q Consensus 393 ~~l~~La~~~~~~g~~~eA~~~l~~Al~i~ 422 (456)
..+.++|.++..+|+|++|.+.|++.....
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 678899999999999999999999977643
No 47
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.73 E-value=0.0011 Score=61.67 Aligned_cols=121 Identities=17% Similarity=0.058 Sum_probs=89.6
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHHHHHh
Q 012772 312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL--------EDWKEALAYCQLTIPVYQRV 383 (456)
Q Consensus 312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~--------g~~~~A~~~~~~~l~~~e~~ 383 (456)
...+..+...|++++|+..++++++ ..|+++....++..++.++... |++++|++.+++++..
T Consensus 74 ~~la~~~~~~~~~~~A~~~~~~~l~-----~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---- 144 (235)
T TIGR03302 74 LDLAYAYYKSGDYAEAIAAADRFIR-----LHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---- 144 (235)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH-----HCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH----
Confidence 4455667788999999999999875 3578888777888888888875 8899999999888753
Q ss_pred cCCCChHHH--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 012772 384 YPQFHPLLG--------------LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA 447 (456)
Q Consensus 384 ~g~~hp~~~--------------~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~ 447 (456)
+ |.++... .....+|.++..+|++.+|+..++++++. -|++|...+....++.+...+
T Consensus 145 ~-p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~a~~~l~~~~~~l 216 (235)
T TIGR03302 145 Y-PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVEN-----YPDTPATEEALARLVEAYLKL 216 (235)
T ss_pred C-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-----CCCCcchHHHHHHHHHHHHHc
Confidence 2 2333222 22357889999999999999999998876 344566666666666665433
No 48
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.72 E-value=0.0004 Score=74.39 Aligned_cols=91 Identities=18% Similarity=0.171 Sum_probs=75.3
Q ss_pred HHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q 012772 315 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 394 (456)
Q Consensus 315 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~ 394 (456)
+..+..+|++++|+..+++++.+ ++....++..++.++..+|++++|+.++++++.+ .+++ ...
T Consensus 338 g~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~---~~~ 401 (615)
T TIGR00990 338 GTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL-----NSED---PDI 401 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHH
Confidence 34455789999999999988754 3345667788999999999999999999999864 2334 457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 395 YYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 395 l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
++.+|.++..+|++++|+..|++|+++
T Consensus 402 ~~~lg~~~~~~g~~~~A~~~~~kal~l 428 (615)
T TIGR00990 402 YYHRAQLHFIKGEFAQAGKDYQKSIDL 428 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 889999999999999999999999876
No 49
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.71 E-value=0.0035 Score=53.65 Aligned_cols=100 Identities=17% Similarity=0.154 Sum_probs=77.6
Q ss_pred HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 012772 308 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 387 (456)
Q Consensus 308 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~ 387 (456)
.......+......++...+...++.+.. -+|++++-..+...++..+...|++++|...++.++.. .++
T Consensus 11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-----~~d 80 (145)
T PF09976_consen 11 ASALYEQALQALQAGDPAKAEAAAEQLAK-----DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-----APD 80 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCC
Confidence 33444444455567888887776666643 25677777788888999999999999999999998762 256
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 012772 388 HPLLGLQYYTCGKLEWFLGDTENAIKSMTE 417 (456)
Q Consensus 388 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~ 417 (456)
........+.||.++..+|++++|++.|++
T Consensus 81 ~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 81 PELKPLARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 677788899999999999999999999865
No 50
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.67 E-value=0.00072 Score=72.50 Aligned_cols=91 Identities=11% Similarity=-0.011 Sum_probs=48.1
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 012772 314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 393 (456)
Q Consensus 314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~ 393 (456)
.|....+.|++++|+.++++++++ .|+-..++.+++.++.+++++++|+..+++++. -.|..+.
T Consensus 92 La~i~~~~g~~~ea~~~l~~~~~~--------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--------~~p~~~~ 155 (694)
T PRK15179 92 VARALEAAHRSDEGLAVWRGIHQR--------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--------GGSSSAR 155 (694)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--------cCCCCHH
Confidence 333344566667766666666542 222244455555555555555555555555542 2344444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772 394 QYYTCGKLEWFLGDTENAIKSMTEAVE 420 (456)
Q Consensus 394 ~l~~La~~~~~~g~~~eA~~~l~~Al~ 420 (456)
.++.+|.++..+|++++|...|+++++
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~ 182 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSR 182 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 555555555555555555555555554
No 51
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.67 E-value=0.00024 Score=52.85 Aligned_cols=72 Identities=22% Similarity=0.315 Sum_probs=60.4
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHH
Q 012772 356 LIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE 435 (456)
Q Consensus 356 L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~ 435 (456)
|..+|...++|++|++++++++.. +|.-...++..|.++..+|++++|...+++++ ..+|+++....
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l-----~~~p~~~~~~~ 67 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERAL-----ELSPDDPDARA 67 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHH-----HHCCCcHHHHH
Confidence 457889999999999999999865 66677788999999999999999999999999 45677777666
Q ss_pred HHHHH
Q 012772 436 LILKL 440 (456)
Q Consensus 436 ~~~~l 440 (456)
+..+|
T Consensus 68 ~~a~l 72 (73)
T PF13371_consen 68 LRAML 72 (73)
T ss_pred HHHhc
Confidence 55543
No 52
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.66 E-value=0.00026 Score=70.40 Aligned_cols=73 Identities=15% Similarity=0.084 Sum_probs=65.7
Q ss_pred CCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 344 PFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 344 p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
+.+|....++.+++.+|..+|+|++|+..++++|++ .|+++.....++++|.+|..+|++++|+..|++|+++
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 346777889999999999999999999999999965 4677776688999999999999999999999999997
No 53
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.65 E-value=0.0017 Score=58.78 Aligned_cols=112 Identities=7% Similarity=0.010 Sum_probs=82.6
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHH-HHHccC--HHHHHHHHHHHHHHHHHhcCCCCh
Q 012772 313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKI-LMELED--WKEALAYCQLTIPVYQRVYPQFHP 389 (456)
Q Consensus 313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~-~~~~g~--~~~A~~~~~~~l~~~e~~~g~~hp 389 (456)
..+..+...|++++|+..|++++++ .|++ ..++..++.+ +...|+ .++|.+.+++++. -+|
T Consensus 78 ~Lg~~~~~~g~~~~A~~a~~~Al~l-----~P~~---~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~--------~dP 141 (198)
T PRK10370 78 LLGEYYLWRNDYDNALLAYRQALQL-----RGEN---AELYAALATVLYYQAGQHMTPQTREMIDKALA--------LDA 141 (198)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH--------hCC
Confidence 3445566789999999999988753 4555 4555778886 467777 5999999999885 344
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 012772 390 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA 445 (456)
Q Consensus 390 ~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~ 445 (456)
.-...++.||..+..+|++++|+.+++++++... ++.+... ++..++.++.
T Consensus 142 ~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~----~~~~r~~-~i~~i~~a~~ 192 (198)
T PRK10370 142 NEVTALMLLASDAFMQADYAQAIELWQKVLDLNS----PRVNRTQ-LVESINMAKL 192 (198)
T ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----CCccHHH-HHHHHHHHHH
Confidence 4456889999999999999999999999988643 3444443 3366655543
No 54
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.63 E-value=0.00071 Score=75.40 Aligned_cols=108 Identities=12% Similarity=0.029 Sum_probs=66.1
Q ss_pred HhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q 012772 316 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQY 395 (456)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l 395 (456)
..+...|++++|+..+++++.+ .|+++ .++.+++.++..+|++++|+.++++++.+ +|.-+..+
T Consensus 617 ~~l~~lG~~deA~~~l~~AL~l-----~Pd~~---~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--------~P~~~~a~ 680 (987)
T PRK09782 617 TIYRQRHNVPAAVSDLRAALEL-----EPNNS---NYQAALGYALWDSGDIAQSREMLERAHKG--------LPDDPALI 680 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHH
Confidence 3344556666666655555432 34443 45566777777777777777777776642 33334567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 012772 396 YTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 444 (456)
Q Consensus 396 ~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~ 444 (456)
++||.++..+|++++|+..|++|+++- |+...+......+.+.+
T Consensus 681 ~nLA~al~~lGd~~eA~~~l~~Al~l~-----P~~a~i~~~~g~~~~~~ 724 (987)
T PRK09782 681 RQLAYVNQRLDDMAATQHYARLVIDDI-----DNQALITPLTPEQNQQR 724 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC-----CCCchhhhhhhHHHHHH
Confidence 777888878888888888888777654 45555554444444443
No 55
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.60 E-value=0.00039 Score=56.76 Aligned_cols=85 Identities=16% Similarity=0.143 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772 351 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS 430 (456)
Q Consensus 351 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h 430 (456)
+++..++..+..+|++++|++++.+++.. .++++.....++.+|.++...|++++|.+++++++.. .|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-----YPKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----CCCC
Confidence 45678899999999999999999998753 2566777888999999999999999999999999864 3666
Q ss_pred chHHHHHHHHHHHHH
Q 012772 431 PFMKELILKLEEAQA 445 (456)
Q Consensus 431 ~~~~~~~~~l~~~~~ 445 (456)
+.+......++.+..
T Consensus 73 ~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 73 PKAPDALLKLGMSLQ 87 (119)
T ss_pred CcccHHHHHHHHHHH
Confidence 655555555555543
No 56
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=4.2e-05 Score=78.36 Aligned_cols=62 Identities=26% Similarity=0.344 Sum_probs=40.8
Q ss_pred ccccCCCcCCCeeE--EeCC--EEEEEEecCCCCCCcccCChh--hHHHhhCCccccCCCCCCCcccC
Q 012772 220 SIINHSCLPNAVLV--FEGR--LAVVRAVQHVPKGAEGQFDDI--QESAILEGYRCKDDGCSGFLLRD 281 (456)
Q Consensus 220 sl~NHSC~PN~~~~--f~~~--~~~vra~~~I~~Gee~~~~~~--r~~~l~~~f~C~C~~C~~~~~~~ 281 (456)
-++||||+|||.+- -.++ +|=+=|.++|++|||||++|. |=..-...=.|.=+.|.|++...
T Consensus 195 RFiNHSC~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYqf~rYGr~AQ~CyCgeanC~G~IGgk 262 (729)
T KOG4442|consen 195 RFINHSCDPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQFDRYGRDAQPCYCGEANCRGWIGGK 262 (729)
T ss_pred HhhcCCCCCCceeeeeeeCCeeEEEEeEecccCCCceeeEecccccccccccccccCCcccccccCCC
Confidence 36899999999763 2343 455679999999999997764 20000001245556799987644
No 57
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.59 E-value=0.001 Score=66.82 Aligned_cols=94 Identities=18% Similarity=0.134 Sum_probs=56.0
Q ss_pred HHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCc--cHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772 315 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV--NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 392 (456)
Q Consensus 315 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~--~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~ 392 (456)
+..+..+|++++|++.+++++.. +|.+. .....+..++.++..+|++++|+.++++++.. .|...
T Consensus 148 a~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~ 214 (389)
T PRK11788 148 LEIYQQEKDWQKAIDVAERLEKL-----GGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--------DPQCV 214 (389)
T ss_pred HHHHHHhchHHHHHHHHHHHHHh-----cCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--------CcCCH
Confidence 33445566677776666665432 23222 23444556666677777777777777776643 22233
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 393 LQYYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 393 ~~l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
..++.+|.++...|++++|+++++++++.
T Consensus 215 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 215 RASILLGDLALAQGDYAAAIEALERVEEQ 243 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45666777777777777777777776654
No 58
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.57 E-value=0.001 Score=66.71 Aligned_cols=94 Identities=14% Similarity=0.108 Sum_probs=54.1
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC-ChHHH
Q 012772 314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF-HPLLG 392 (456)
Q Consensus 314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~-hp~~~ 392 (456)
.+..+...|++++|+..++++++. .|.+ ..++..++.++...|++++|+.++++++. .|.. .....
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~-----~~~~~~~~~~ 107 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKV-----DPET---VELHLALGNLFRRRGEVDRAIRIHQNLLS-----RPDLTREQRL 107 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhc-----Cccc---HHHHHHHHHHHHHcCcHHHHHHHHHHHhc-----CCCCCHHHHH
Confidence 333444556677777666666542 2322 34556666666777777777766665553 1221 12234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772 393 LQYYTCGKLEWFLGDTENAIKSMTEAVE 420 (456)
Q Consensus 393 ~~l~~La~~~~~~g~~~eA~~~l~~Al~ 420 (456)
..++.||.++...|++++|+++++++++
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~ 135 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVD 135 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence 4566666666666666666666666654
No 59
>PRK15331 chaperone protein SicA; Provisional
Probab=97.56 E-value=0.0026 Score=54.84 Aligned_cols=108 Identities=9% Similarity=0.145 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 012772 306 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP 385 (456)
Q Consensus 306 ~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g 385 (456)
++++.+...|-.+..+|++++|..+|+-+- .+.|.++. ....||.++..+++|++|+..+-.+..+ .
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~-----~~d~~n~~---Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-----~ 101 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLC-----IYDFYNPD---YTMGLAAVCQLKKQFQKACDLYAVAFTL-----L 101 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----HhCcCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHc-----c
Confidence 345667778888899999999999887553 35566644 3578999999999999999999877643 3
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHH
Q 012772 386 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE 435 (456)
Q Consensus 386 ~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~ 435 (456)
.+.|.. .+..|.-++.+|+.++|+..|+-|++ .++|+.+++
T Consensus 102 ~~dp~p---~f~agqC~l~l~~~~~A~~~f~~a~~------~~~~~~l~~ 142 (165)
T PRK15331 102 KNDYRP---VFFTGQCQLLMRKAAKARQCFELVNE------RTEDESLRA 142 (165)
T ss_pred cCCCCc---cchHHHHHHHhCCHHHHHHHHHHHHh------CcchHHHHH
Confidence 344432 67889999999999999999999888 355665554
No 60
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.003 Score=61.63 Aligned_cols=106 Identities=14% Similarity=0.165 Sum_probs=82.2
Q ss_pred HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCC-------ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 012772 308 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFS-------VNLMQTREKLIKILMELEDWKEALAYCQLTIPVY 380 (456)
Q Consensus 308 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h-------~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~ 380 (456)
....-+.+..+...|+|..|...|++++.......+-+. .....++.||+..+.++++|.+|+++|.++|.+
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~- 286 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL- 286 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-
Confidence 344445666778889999999999998876542211111 234566789999999999999999999999853
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 381 QRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 381 e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
.+.| .-.||.=|+++..+|+|+.|+..|++|+++
T Consensus 287 ----~~~N---~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 287 ----DPNN---VKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred ----CCCc---hhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 2333 457899999999999999999999999875
No 61
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.55 E-value=0.0017 Score=57.32 Aligned_cols=72 Identities=13% Similarity=0.027 Sum_probs=62.6
Q ss_pred CCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 345 FSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 345 ~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
.++..+.++..++..+...|++++|+.++++++.+. ++++..+..++.+|.++..+|++++|+..+++|+++
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 355567788999999999999999999999998753 345556789999999999999999999999999986
No 62
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.46 E-value=0.004 Score=53.31 Aligned_cols=115 Identities=19% Similarity=0.217 Sum_probs=79.9
Q ss_pred HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCC-C-------------ccHHHHHHHHHHHHHHccCHHHHHHHH
Q 012772 308 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPF-S-------------VNLMQTREKLIKILMELEDWKEALAYC 373 (456)
Q Consensus 308 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~-h-------------~~~~~~~~~L~~~~~~~g~~~~A~~~~ 373 (456)
++++...+......|+...+++.+++++.++..-+-+. . ...+.+...++..+...|++++|+.++
T Consensus 6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 85 (146)
T PF03704_consen 6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL 85 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 34444445445556788888888888888775433332 1 223455566777788899999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772 374 QLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS 430 (456)
Q Consensus 374 ~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h 430 (456)
++++.+ +|.--..+..|-.++..+|+..+|...|++..+.+...+|-+-
T Consensus 86 ~~~l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~P 134 (146)
T PF03704_consen 86 QRALAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEP 134 (146)
T ss_dssp HHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS---
T ss_pred HHHHhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCc
Confidence 999863 5555566777888899999999999999999999999999754
No 63
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.46 E-value=0.00061 Score=61.44 Aligned_cols=96 Identities=13% Similarity=0.035 Sum_probs=80.0
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 012772 314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 393 (456)
Q Consensus 314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~ 393 (456)
.|..+...|..+.|.+.|++++.+ .|++ .++++|-+..+..+|++++|..++++++.. |..+..+.
T Consensus 75 ~A~~Yq~~Ge~~~A~e~YrkAlsl-----~p~~---GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~Y~~~s~ 140 (250)
T COG3063 75 RAHYYQKLGENDLADESYRKALSL-----APNN---GDVLNNYGAFLCAQGRPEEAMQQFERALAD------PAYGEPSD 140 (250)
T ss_pred HHHHHHHcCChhhHHHHHHHHHhc-----CCCc---cchhhhhhHHHHhCCChHHHHHHHHHHHhC------CCCCCcch
Confidence 444466789999999999998753 3444 666788999999999999999999988643 77788888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012772 394 QYYTCGKLEWFLGDTENAIKSMTEAVEILR 423 (456)
Q Consensus 394 ~l~~La~~~~~~g~~~eA~~~l~~Al~i~~ 423 (456)
++-|+|...+.+|+.+.|+.+|++|+++.-
T Consensus 141 t~eN~G~Cal~~gq~~~A~~~l~raL~~dp 170 (250)
T COG3063 141 TLENLGLCALKAGQFDQAEEYLKRALELDP 170 (250)
T ss_pred hhhhhHHHHhhcCCchhHHHHHHHHHHhCc
Confidence 999999999999999999999999998643
No 64
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.00068 Score=68.31 Aligned_cols=109 Identities=17% Similarity=0.248 Sum_probs=84.0
Q ss_pred HhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q 012772 316 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQY 395 (456)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l 395 (456)
......+.|.+|...++.++.....+ .+.-+....+..+||.+|.+++.+++|+.+++++|.. .|.-+..+
T Consensus 422 vvay~~~~y~~A~~~f~~~l~~ik~~-~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--------~~k~~~~~ 492 (611)
T KOG1173|consen 422 VVAYTYEEYPEALKYFQKALEVIKSV-LNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--------SPKDASTH 492 (611)
T ss_pred heeehHhhhHHHHHHHHHHHHHhhhc-cccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--------CCCchhHH
Confidence 33445578899999999988554443 3444467788899999999999999999999999953 44556677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 012772 396 YTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELIL 438 (456)
Q Consensus 396 ~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~ 438 (456)
-.+|-+|..+|+++.|+++|.||+.+ -|+...+.+++.
T Consensus 493 asig~iy~llgnld~Aid~fhKaL~l-----~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 493 ASIGYIYHLLGNLDKAIDHFHKALAL-----KPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhc-----CCccHHHHHHHH
Confidence 78899999999999999999999975 344544554443
No 65
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.42 E-value=0.003 Score=68.10 Aligned_cols=115 Identities=12% Similarity=0.033 Sum_probs=81.4
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772 312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 391 (456)
Q Consensus 312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~ 391 (456)
...+..+..+|++++|+..+++++.+ .|+++ .+...++.++..+|++++|+..+++++.. +|..
T Consensus 288 ~~lg~~l~~~g~~~eA~~~l~~al~l-----~P~~~---~a~~~La~~l~~~G~~~eA~~~l~~al~~--------~P~~ 351 (656)
T PRK15174 288 TLYADALIRTGQNEKAIPLLQQSLAT-----HPDLP---YVRAMYARALRQVGQYTAASDEFVQLARE--------KGVT 351 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------Cccc
Confidence 34566677889999999888888653 45554 45667888999999999999998887753 3333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 012772 392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA 445 (456)
Q Consensus 392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~ 445 (456)
......+|.++..+|++++|++.|++++++.-..+. +...+....+.++..
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~---~~~~ea~~~~~~~~~ 402 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP---QSFEEGLLALDGQIS 402 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch---hhHHHHHHHHHHHHH
Confidence 445556688888899999999999999888665542 233445555555443
No 66
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.37 E-value=0.0018 Score=71.59 Aligned_cols=103 Identities=18% Similarity=0.042 Sum_probs=78.5
Q ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-----------
Q 012772 311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV----------- 379 (456)
Q Consensus 311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~----------- 379 (456)
....|..+..+|++++|+..+++++.+ .|. ...++..++.+|..+|+|++|+.++++++..
T Consensus 25 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 96 (899)
T TIGR02917 25 LIEAAKSYLQKNKYKAAIIQLKNALQK-----DPN---DAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLL 96 (899)
T ss_pred HHHHHHHHHHcCChHhHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHH
Confidence 345556667789999999988888743 333 3467778999999999999999998887642
Q ss_pred ----------------HHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 380 ----------------YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 380 ----------------~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
++...+...+..+..+..+|..+...|++++|...|++++++
T Consensus 97 a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 154 (899)
T TIGR02917 97 ARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAI 154 (899)
T ss_pred HHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 222333466777788888999999999999999999988764
No 67
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.36 E-value=0.0022 Score=69.13 Aligned_cols=93 Identities=13% Similarity=0.121 Sum_probs=72.4
Q ss_pred HHHHhhhhcCChHH----HHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772 313 KKTLALTSCGNHQE----VVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 388 (456)
Q Consensus 313 ~~a~~~~~~g~~~~----a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~h 388 (456)
..+..+...|++++ |+..+++++.+ .|+ ...++..++.++..+|++++|+.++++++.. +
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-----~P~---~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--------~ 314 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQF-----NSD---NVRIVTLYADALIRTGQNEKAIPLLQQSLAT--------H 314 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHhh-----CCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------C
Confidence 34555667888875 67777777653 344 3577788999999999999999999998863 3
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 389 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 389 p~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
|.....+..||.++...|++++|+..|+++++.
T Consensus 315 P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 315 PDLPYVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 334456778999999999999999999988874
No 68
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.34 E-value=0.0019 Score=69.28 Aligned_cols=96 Identities=9% Similarity=-0.086 Sum_probs=81.0
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772 312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 391 (456)
Q Consensus 312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~ 391 (456)
...|..+..++++++|+..+++++.. .|+-...+..++.++.++|++++|.++|++++. .||.-
T Consensus 124 ~~~a~~L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------~~p~~ 187 (694)
T PRK15179 124 ILMLRGVKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSR--------QHPEF 187 (694)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--------cCCCc
Confidence 44555667788999999988888643 444567788999999999999999999999874 67777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012772 392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 423 (456)
Q Consensus 392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~ 423 (456)
...+..+|.++...|+.++|...|++|++...
T Consensus 188 ~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 188 ENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 88999999999999999999999999988653
No 69
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.30 E-value=0.0017 Score=47.06 Aligned_cols=59 Identities=22% Similarity=0.258 Sum_probs=48.6
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 012772 313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV 379 (456)
Q Consensus 313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~ 379 (456)
..|..+..+|++++|++.++++++ .+|.-..++..++.++..+|++++|+.++++++..
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345667789999999999988864 23557888899999999999999999999998854
No 70
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.27 E-value=0.0046 Score=69.39 Aligned_cols=108 Identities=10% Similarity=0.103 Sum_probs=89.5
Q ss_pred HhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q 012772 316 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQY 395 (456)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l 395 (456)
..+...|++++|...+++++...+. .++.+. ...+...++.++...|++++|..++++++.+.+...+..++..+..+
T Consensus 499 ~~~~~~G~~~~A~~~~~~al~~~~~-~g~~~~-~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 576 (903)
T PRK04841 499 EVHHCKGELARALAMMQQTEQMARQ-HDVYHY-ALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLL 576 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhh-hcchHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence 3345689999999999999877654 344333 35577889999999999999999999999998887666777777778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 012772 396 YTCGKLEWFLGDTENAIKSMTEAVEILRIT 425 (456)
Q Consensus 396 ~~La~~~~~~g~~~eA~~~l~~Al~i~~~~ 425 (456)
..+|.++..+|++++|...+++++.+....
T Consensus 577 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 606 (903)
T PRK04841 577 RIRAQLLWEWARLDEAEQCARKGLEVLSNY 606 (903)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhHHhhhcc
Confidence 889999999999999999999999987743
No 71
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.24 E-value=0.0063 Score=53.79 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 012772 297 SKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLT 376 (456)
Q Consensus 297 ~~~~~~~~~~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~ 376 (456)
+.++..+...++..+-.+...++..|+|++|.+-|..+++++.... .....-++.+-+.+.++++.|+.|+.-|.++
T Consensus 84 ~deek~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~---~e~rsIly~Nraaa~iKl~k~e~aI~dcsKa 160 (271)
T KOG4234|consen 84 SDEEKDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS---TEERSILYSNRAAALIKLRKWESAIEDCSKA 160 (271)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc---HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhh
Confidence 3344455566677777788888899999999999999998753321 1234445567778899999999999999999
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 377 IPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 377 l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
+.+ .|..-..+..=|.+|-+..++++|+.=|++.+++
T Consensus 161 iel--------~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 161 IEL--------NPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred Hhc--------CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 964 4455555667788999999999999988877664
No 72
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.21 E-value=0.0033 Score=70.15 Aligned_cols=92 Identities=12% Similarity=0.097 Sum_probs=71.7
Q ss_pred cCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 012772 321 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK 400 (456)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~ 400 (456)
.|++++|+..+++++++ .| . ..++.+++.++.++|++++|+..+++++.. .|.-+..+++||.
T Consensus 589 ~Gr~~eAl~~~~~AL~l-----~P---~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--------~Pd~~~a~~nLG~ 651 (987)
T PRK09782 589 PGQPELALNDLTRSLNI-----AP---S-ANAYVARATIYRQRHNVPAAVSDLRAALEL--------EPNNSNYQAALGY 651 (987)
T ss_pred CCCHHHHHHHHHHHHHh-----CC---C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 47888888877777643 23 2 467788899999999999999999988854 3444468899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHH
Q 012772 401 LEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK 434 (456)
Q Consensus 401 ~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~ 434 (456)
++..+|++++|++.|++|+++ .|+++...
T Consensus 652 aL~~~G~~eeAi~~l~~AL~l-----~P~~~~a~ 680 (987)
T PRK09782 652 ALWDSGDIAQSREMLERAHKG-----LPDDPALI 680 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHh-----CCCCHHHH
Confidence 999999999999999999885 56666544
No 73
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.18 E-value=0.003 Score=46.30 Aligned_cols=62 Identities=16% Similarity=0.173 Sum_probs=51.3
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHH
Q 012772 310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE-DWKEALAYCQLTIPV 379 (456)
Q Consensus 310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g-~~~~A~~~~~~~l~~ 379 (456)
.....+..+...|++++|+..|++++++ .|+ -..++.+++.++..+| ++++|++++++++.+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~-----~p~---~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIEL-----DPN---NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHH-----STT---HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC---CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 3445666778899999999999999865 344 4568899999999999 799999999999864
No 74
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.17 E-value=0.019 Score=54.32 Aligned_cols=85 Identities=15% Similarity=0.161 Sum_probs=66.5
Q ss_pred HHHHHHH-HHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772 352 TREKLIK-ILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS 430 (456)
Q Consensus 352 ~~~~L~~-~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h 430 (456)
..+..+. ++...|+|++|+..+++.+.. | |+++.....++.||.+|..+|++++|+..|++++.-. |+|
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~----y-P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~s 213 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK----Y-PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PKS 213 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH----C-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCC
Confidence 3344444 446779999999998887754 3 4677778899999999999999999999988887654 688
Q ss_pred chHHHHHHHHHHHHHH
Q 012772 431 PFMKELILKLEEAQAE 446 (456)
Q Consensus 431 ~~~~~~~~~l~~~~~e 446 (456)
|...+.+.+++.+..+
T Consensus 214 ~~~~dAl~klg~~~~~ 229 (263)
T PRK10803 214 PKAADAMFKVGVIMQD 229 (263)
T ss_pred cchhHHHHHHHHHHHH
Confidence 8888888877776543
No 75
>PRK12370 invasion protein regulator; Provisional
Probab=97.13 E-value=0.0023 Score=67.60 Aligned_cols=84 Identities=12% Similarity=0.041 Sum_probs=63.1
Q ss_pred CChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 012772 322 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKL 401 (456)
Q Consensus 322 g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~ 401 (456)
+++++|+..+++++++ .|++ ..++..++.++..+|++++|+.++++++.+ .|++ +..++.+|.+
T Consensus 318 ~~~~~A~~~~~~Al~l-----dP~~---~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-----~P~~---~~a~~~lg~~ 381 (553)
T PRK12370 318 NAMIKAKEHAIKATEL-----DHNN---PQALGLLGLINTIHSEYIVGSLLFKQANLL-----SPIS---ADIKYYYGWN 381 (553)
T ss_pred hHHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHH
Confidence 4567777777777643 4554 455667888888899999999999988863 2344 4467888999
Q ss_pred HHHcCCHHHHHHHHHHHHHH
Q 012772 402 EWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 402 ~~~~g~~~eA~~~l~~Al~i 421 (456)
+..+|++++|+..+++|+++
T Consensus 382 l~~~G~~~eAi~~~~~Al~l 401 (553)
T PRK12370 382 LFMAGQLEEALQTINECLKL 401 (553)
T ss_pred HHHCCCHHHHHHHHHHHHhc
Confidence 98999999999998888775
No 76
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.13 E-value=0.0074 Score=58.84 Aligned_cols=102 Identities=13% Similarity=0.144 Sum_probs=73.5
Q ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 012772 319 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC 398 (456)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~L 398 (456)
+--|+|++|+...+.-+++.+ -+|. ....-++..+|++.++-+|+|+.|+++|++++.+...+ ++-..-|...|.|
T Consensus 206 YlLGdf~~ai~~H~~RL~ia~-efGD-rAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel--g~r~vEAQscYSL 281 (639)
T KOG1130|consen 206 YLLGDFDQAIHFHKLRLEIAQ-EFGD-RAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL--GNRTVEAQSCYSL 281 (639)
T ss_pred eeeccHHHHHHHHHHHHHHHH-Hhhh-HHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh--cchhHHHHHHHHh
Confidence 345789999888776666643 3442 23345677888888888999999999998888765543 4455567777788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012772 399 GKLEWFLGDTENAIKSMTEAVEILRI 424 (456)
Q Consensus 399 a~~~~~~g~~~eA~~~l~~Al~i~~~ 424 (456)
|..|.-+.+++.|++|..+-++|-+.
T Consensus 282 gNtytll~e~~kAI~Yh~rHLaIAqe 307 (639)
T KOG1130|consen 282 GNTYTLLKEVQKAITYHQRHLAIAQE 307 (639)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777778888887777777554
No 77
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.12 E-value=0.0076 Score=69.42 Aligned_cols=97 Identities=14% Similarity=0.083 Sum_probs=75.7
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccH-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 012772 312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNL-----------MQTREKLIKILMELEDWKEALAYCQLTIPVY 380 (456)
Q Consensus 312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~-----------~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~ 380 (456)
...+..+..+|++++|+..++++++. .|.+... ......++.++...|++++|+.++++++.+
T Consensus 307 ~~Lg~~~~~~g~~~eA~~~l~~Al~~-----~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~- 380 (1157)
T PRK11447 307 GALGQAYSQQGDRARAVAQFEKALAL-----DPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV- 380 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 44556677899999999999998764 2433321 122345577888999999999999999875
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 381 QRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 381 e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
+|.-...++.||.++..+|++++|++.|++|+++
T Consensus 381 -------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~ 414 (1157)
T PRK11447 381 -------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM 414 (1157)
T ss_pred -------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3344567889999999999999999999999976
No 78
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.12 E-value=0.0034 Score=62.14 Aligned_cols=92 Identities=15% Similarity=0.167 Sum_probs=72.7
Q ss_pred hhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q 012772 317 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY 396 (456)
Q Consensus 317 ~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~ 396 (456)
.+..+|++++|+..+++++++ .|.+ ..+...++.++...|++++|+.++++.+.... .........+.
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~-----~p~~---~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~----~~~~~~~~~~~ 190 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALEL-----NPDD---AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD----CSSMLRGHNWW 190 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhh-----CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC----CCcchhHHHHH
Confidence 345689999999999998764 3455 45567889999999999999999999886543 22223344677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 012772 397 TCGKLEWFLGDTENAIKSMTEAVE 420 (456)
Q Consensus 397 ~La~~~~~~g~~~eA~~~l~~Al~ 420 (456)
.+|.++..+|++++|...|++++.
T Consensus 191 ~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 191 HLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhc
Confidence 899999999999999999999843
No 79
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.11 E-value=0.038 Score=51.12 Aligned_cols=127 Identities=21% Similarity=0.270 Sum_probs=97.2
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 012772 310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 389 (456)
Q Consensus 310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp 389 (456)
.+.+++......|+|++|++.++.+.. -||..+..-++.-.++.++.+.+++++|+.+..+-+.. -|.||
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~-----~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l-----yP~~~ 105 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDS-----RHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL-----YPTHP 105 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-----CCCCC
Confidence 344455555668999999999988753 57888888889999999999999999999998887643 36899
Q ss_pred HHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Q 012772 390 LLGLQYYTCGKLEWFL-----GDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS 448 (456)
Q Consensus 390 ~~~~~l~~La~~~~~~-----g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~~ 448 (456)
.....++-.|..+... .+...+...+....+.+.+. |+++.+.+...+|..+...+-
T Consensus 106 n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~Ya~dA~~~i~~~~d~LA 167 (254)
T COG4105 106 NADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSRYAPDAKARIVKLNDALA 167 (254)
T ss_pred ChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCcchhhHHHHHHHHHHHHH
Confidence 9999999999987754 34455666666666666665 688888888877777765443
No 80
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.08 E-value=0.0027 Score=54.42 Aligned_cols=67 Identities=12% Similarity=-0.029 Sum_probs=56.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchH
Q 012772 354 EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM 433 (456)
Q Consensus 354 ~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~ 433 (456)
..++.++...|++++|+.++++++. ..|.-...++++|.++..+|++++|+..|++|+++ .|+++..
T Consensus 28 ~~~g~~~~~~g~~~~A~~~~~~al~--------~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-----~p~~~~a 94 (144)
T PRK15359 28 YASGYASWQEGDYSRAVIDFSWLVM--------AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML-----DASHPEP 94 (144)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--------cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCcHH
Confidence 3578899999999999999999874 34556778899999999999999999999999974 4555544
No 81
>PRK12370 invasion protein regulator; Provisional
Probab=97.07 E-value=0.0046 Score=65.32 Aligned_cols=92 Identities=15% Similarity=0.005 Sum_probs=65.3
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 012772 314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 393 (456)
Q Consensus 314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~ 393 (456)
.+..+..+|++++|+..+++++++ .|+++ .++..++.++..+|++++|+.++++++.+ .|.++..
T Consensus 344 lg~~~~~~g~~~~A~~~~~~Al~l-----~P~~~---~a~~~lg~~l~~~G~~~eAi~~~~~Al~l-----~P~~~~~-- 408 (553)
T PRK12370 344 LGLINTIHSEYIVGSLLFKQANLL-----SPISA---DIKYYYGWNLFMAGQLEEALQTINECLKL-----DPTRAAA-- 408 (553)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCChhh--
Confidence 344456789999999999998763 45554 45678899999999999999999998754 2334332
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 394 QYYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 394 ~l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
.+.++.++...|++++|+..+++++..
T Consensus 409 -~~~~~~~~~~~g~~eeA~~~~~~~l~~ 435 (553)
T PRK12370 409 -GITKLWITYYHTGIDDAIRLGDELRSQ 435 (553)
T ss_pred -HHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 223444555678888888887776543
No 82
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.05 E-value=0.0015 Score=47.67 Aligned_cols=52 Identities=12% Similarity=0.109 Sum_probs=43.1
Q ss_pred HHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772 361 MELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 420 (456)
Q Consensus 361 ~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~ 420 (456)
+..|+|++|++++++++.. +|.-....+.||.++..+|++++|...+++++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5689999999999999853 455566777999999999999999999988765
No 83
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.05 E-value=0.0057 Score=70.45 Aligned_cols=94 Identities=13% Similarity=0.100 Sum_probs=74.4
Q ss_pred HHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH----
Q 012772 315 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL---- 390 (456)
Q Consensus 315 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~---- 390 (456)
+..+...|++++|+..++++++. .|.+ ..++..|+.+|..+|++++|+.++++++.. .| +++.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~-----~P~~---~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~----~p-~~~~~~~~ 342 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRA-----NPKD---SEALGALGQAYSQQGDRARAVAQFEKALAL----DP-HSSNRDKW 342 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CC-CccchhHH
Confidence 45566789999999999999764 3444 567789999999999999999999998864 23 2221
Q ss_pred -------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 391 -------LGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 391 -------~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
....+..+|.++...|++++|+..|++|+++
T Consensus 343 ~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~ 380 (1157)
T PRK11447 343 ESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV 380 (1157)
T ss_pred HHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 1223456688999999999999999999987
No 84
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=97.03 E-value=0.00044 Score=71.53 Aligned_cols=61 Identities=28% Similarity=0.408 Sum_probs=44.8
Q ss_pred ccccccCCCcCCCeeEEeC----CEEEEEEecCCCCCCcccCChh-----hH--HHh---hCCccccCCCCCCCc
Q 012772 218 VISIINHSCLPNAVLVFEG----RLAVVRAVQHVPKGAEGQFDDI-----QE--SAI---LEGYRCKDDGCSGFL 278 (456)
Q Consensus 218 ~~sl~NHSC~PN~~~~f~~----~~~~vra~~~I~~Gee~~~~~~-----r~--~~l---~~~f~C~C~~C~~~~ 278 (456)
.+.++||||.||+..+..+ .++.++|+++|.+|+|+||.+. .+ ... ..+..|.+.+|.+.+
T Consensus 405 ~~r~~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (480)
T COG2940 405 VARFINHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGPSLEDNRELKKLLEKRWGCACGEDRCSHTM 479 (480)
T ss_pred ccceeecCCCCCcceecccccccceeeecccccchhhhhhccccccccccchhhhhhhhhhhccccCCCccCCCC
Confidence 4568999999999988643 2789999999999999997652 11 111 224578888888643
No 85
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.96 E-value=0.0066 Score=50.04 Aligned_cols=64 Identities=16% Similarity=0.013 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772 352 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 420 (456)
Q Consensus 352 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~ 420 (456)
+...++.++-.+|+.++|+.+|++++. .|...+.....+..+|..+..+|++++|+.++++++.
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~-----~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALA-----AGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567888999999999999999999986 4666777788999999999999999999999998875
No 86
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=96.91 E-value=0.033 Score=52.96 Aligned_cols=127 Identities=15% Similarity=0.166 Sum_probs=81.3
Q ss_pred HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC-CC
Q 012772 309 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-QF 387 (456)
Q Consensus 309 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g-~~ 387 (456)
..+.+.+..|+..|=++.|+++|..+... ....-.++..|..+|-...+|++|++..+++..+ -| ++
T Consensus 108 lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~----~~q~~ 175 (389)
T COG2956 108 LALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKL----GGQTY 175 (389)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc----CCccc
Confidence 34445556666777778887777666431 1123466777888888888888888887765532 22 45
Q ss_pred ChHHHHHHHHHHHHHHHcCCH---------------------------HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 012772 388 HPLLGLQYYTCGKLEWFLGDT---------------------------ENAIKSMTEAVEILRITHGTNSPFMKELILKL 440 (456)
Q Consensus 388 hp~~~~~l~~La~~~~~~g~~---------------------------~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l 440 (456)
...+|.-+=+||..+....+. .-+..-|++|++.++...-.|+.++.+++.+|
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 566666666666655443333 33333344555666666667888888999999
Q ss_pred HHHHHHH
Q 012772 441 EEAQAEA 447 (456)
Q Consensus 441 ~~~~~e~ 447 (456)
.++..++
T Consensus 256 ~~~Y~~l 262 (389)
T COG2956 256 YECYAQL 262 (389)
T ss_pred HHHHHHh
Confidence 8887654
No 87
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.84 E-value=0.0054 Score=51.46 Aligned_cols=64 Identities=20% Similarity=0.178 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 350 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 350 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
......++..+...|++++|.+++++++.. +|.....++.+|.++..+|++++|.+++++++++
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466788999999999999999999887753 3445677889999999999999999999999886
No 88
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.81 E-value=0.0024 Score=64.66 Aligned_cols=97 Identities=19% Similarity=0.221 Sum_probs=81.0
Q ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 012772 318 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 397 (456)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~ 397 (456)
|.-.|+|++|++.|+.++.. -|++ ..+++.|+..+..-.+.++|+..|+++|.+ -|.....-|+
T Consensus 440 y~ls~efdraiDcf~~AL~v-----~Pnd---~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--------qP~yVR~RyN 503 (579)
T KOG1125|consen 440 YNLSGEFDRAVDCFEAALQV-----KPND---YLLWNRLGATLANGNRSEEAISAYNRALQL--------QPGYVRVRYN 503 (579)
T ss_pred HhcchHHHHHHHHHHHHHhc-----CCch---HHHHHHhhHHhcCCcccHHHHHHHHHHHhc--------CCCeeeeehh
Confidence 55678999999999988743 3555 456789999999999999999999999974 3455667799
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772 398 CGKLEWFLGDTENAIKSMTEAVEILRITHGTNS 430 (456)
Q Consensus 398 La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h 430 (456)
||..++++|.|+||.++|-.|+.+..+..+..-
T Consensus 504 lgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~ 536 (579)
T KOG1125|consen 504 LGISCMNLGAYKEAVKHLLEALSMQRKSRNHNK 536 (579)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhhccccccc
Confidence 999999999999999999999999999765443
No 89
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.80 E-value=0.024 Score=63.68 Aligned_cols=110 Identities=15% Similarity=-0.008 Sum_probs=87.2
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772 313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 392 (456)
Q Consensus 313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~ 392 (456)
..+..+..+|++++|...+++++.+.+..-++.++....+...++.++...|++++|..++++++.+.+... .....
T Consensus 536 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~---~~~~~ 612 (903)
T PRK04841 536 QQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ---PQQQL 612 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC---chHHH
Confidence 345556788999999999999988876654444444455566788899999999999999999999877433 23455
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 012772 393 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 425 (456)
Q Consensus 393 ~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~ 425 (456)
..+..+|.++...|++++|...+.++..+....
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~ 645 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRYLNRLENLLGNG 645 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence 677889999999999999999999999876553
No 90
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.78 E-value=0.0013 Score=67.51 Aligned_cols=68 Identities=13% Similarity=0.130 Sum_probs=56.9
Q ss_pred ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772 347 VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 422 (456)
Q Consensus 347 ~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~ 422 (456)
+.-.++++.|+.+|.++|+++.|+-++++++. ..|.-...+-.+|.++..+|+.++|+.+|++|..+-
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--------INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld 553 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--------INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD 553 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhc--------CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC
Confidence 44567888999999999999999999998885 467777788888999999999999999999987643
No 91
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.0054 Score=62.04 Aligned_cols=101 Identities=17% Similarity=0.143 Sum_probs=71.3
Q ss_pred CCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012772 344 PFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 423 (456)
Q Consensus 344 p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~ 423 (456)
|++|.+. +.++.+....+.|.+|..+++.++...+.+.+.- +.-.-.+.+||-++.+++++++|+.++++|+..-.
T Consensus 411 P~Dplv~---~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~-~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~ 486 (611)
T KOG1173|consen 411 PSDPLVL---HELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK-IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP 486 (611)
T ss_pred CCcchhh---hhhhheeehHhhhHHHHHHHHHHHHHhhhccccc-cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 5555543 4677777778999999999999998777666532 24445689999999999999999999999998654
Q ss_pred HhcCCCCchHHHHHHHHHHHHHHHHh
Q 012772 424 ITHGTNSPFMKELILKLEEAQAEASY 449 (456)
Q Consensus 424 ~~~G~~h~~~~~~~~~l~~~~~e~~~ 449 (456)
+. -..|..+.=+...+......+.+
T Consensus 487 k~-~~~~asig~iy~llgnld~Aid~ 511 (611)
T KOG1173|consen 487 KD-ASTHASIGYIYHLLGNLDKAIDH 511 (611)
T ss_pred Cc-hhHHHHHHHHHHHhcChHHHHHH
Confidence 42 12333344444555555555544
No 92
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.72 E-value=0.025 Score=62.63 Aligned_cols=62 Identities=16% Similarity=0.182 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772 350 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 420 (456)
Q Consensus 350 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~ 420 (456)
..++..++.+|..+|++++|++++++++.. +|.-...++.+|.++...|+ .+|+.+++++++
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~ 831 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVKK--------APDNAVVLNNLAWLYLELKD-PRALEYAEKALK 831 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh
Confidence 345566677777777777777777766643 12223344555555555555 445555555554
No 93
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.67 E-value=0.019 Score=43.28 Aligned_cols=62 Identities=26% Similarity=0.409 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 352 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 352 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
++..++..+..+|++++|+.++++++.. .| .++ ..++.+|.++...|++++|.+.+++++.+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~-~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 63 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL----DP-DNA---DAYYNLAAAYYKLGKYEEALEDYEKALEL 63 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc----CC-ccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4567888999999999999999988764 22 222 67889999999999999999999999875
No 94
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.65 E-value=0.0046 Score=39.08 Aligned_cols=31 Identities=26% Similarity=0.309 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012772 394 QYYTCGKLEWFLGDTENAIKSMTEAVEILRI 424 (456)
Q Consensus 394 ~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~ 424 (456)
.+.+||.+|..+|++++|+++|++|+.+-..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4789999999999999999999999976544
No 95
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.64 E-value=0.025 Score=55.29 Aligned_cols=111 Identities=15% Similarity=0.081 Sum_probs=89.3
Q ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 012772 319 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC 398 (456)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~L 398 (456)
.-.|+++.|++.|++.+.+... +|.. ..-+++-+.|++.|.-..+++.|+.|.++-|.|.+.+ .+-.--+..++.|
T Consensus 246 iflg~fe~A~ehYK~tl~LAie-lg~r-~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL--~DriGe~RacwSL 321 (639)
T KOG1130|consen 246 IFLGNFELAIEHYKLTLNLAIE-LGNR-TVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL--EDRIGELRACWSL 321 (639)
T ss_pred hhhcccHhHHHHHHHHHHHHHH-hcch-hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhHHHHHHH
Confidence 3458899999999998876543 3432 2346777899999999999999999999999998765 3445567899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchH
Q 012772 399 GKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM 433 (456)
Q Consensus 399 a~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~ 433 (456)
|..+..+|..++|+.+.++++++-....-+.-..|
T Consensus 322 gna~~alg~h~kAl~fae~hl~~s~ev~D~sgelT 356 (639)
T KOG1130|consen 322 GNAFNALGEHRKALYFAELHLRSSLEVNDTSGELT 356 (639)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhh
Confidence 99999999999999999999999888754443333
No 96
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=0.039 Score=56.35 Aligned_cols=105 Identities=11% Similarity=0.072 Sum_probs=78.1
Q ss_pred HHhhhhcCChHHHHHHHHHHHHH-----------------------HHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHH
Q 012772 315 TLALTSCGNHQEVVSTYKMIEKL-----------------------QKKLYHPFSVNLMQTREKLIKILMELEDWKEALA 371 (456)
Q Consensus 315 a~~~~~~g~~~~a~~~~~~~~~~-----------------------~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~ 371 (456)
|..++..|+|++|.++|+.+.+- ..+.....--...+..+|.+.+++..|+|.+|++
T Consensus 117 AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~e 196 (652)
T KOG2376|consen 117 AQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIE 196 (652)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHH
Confidence 44566778889998888877321 0111222223377888999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCC-------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012772 372 YCQLTIPVYQRVYPQFH-------PLLGLQYYTCGKLEWFLGDTENAIKSMTEAV 419 (456)
Q Consensus 372 ~~~~~l~~~e~~~g~~h-------p~~~~~l~~La~~~~~~g~~~eA~~~l~~Al 419 (456)
..++++.+.++-+-.+. -.++..-.+|+.++..+|+.+||...|...+
T Consensus 197 lL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 197 LLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred HHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 99999988766554221 4577788899999999999999998876544
No 97
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.61 E-value=0.018 Score=63.34 Aligned_cols=93 Identities=15% Similarity=0.142 Sum_probs=73.3
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772 312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 391 (456)
Q Consensus 312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~ 391 (456)
...|..+..+|++++|++.++++++. -|.++ .+...++.++...|++++|+.++++++.. .|+++.
T Consensus 53 ~~lA~~~~~~g~~~~A~~~~~~al~~-----~P~~~---~a~~~la~~l~~~g~~~eA~~~l~~~l~~-----~P~~~~- 118 (765)
T PRK10049 53 AAVAVAYRNLKQWQNSLTLWQKALSL-----EPQND---DYQRGLILTLADAGQYDEALVKAKQLVSG-----APDKAN- 118 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHH-
Confidence 44556677889999999999988754 35553 34468888999999999999999988753 234433
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
++.+|.++...|++++|+..+++|+++
T Consensus 119 ---~~~la~~l~~~g~~~~Al~~l~~al~~ 145 (765)
T PRK10049 119 ---LLALAYVYKRAGRHWDELRAMTQALPR 145 (765)
T ss_pred ---HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 778899999999999999999998884
No 98
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.59 E-value=0.0081 Score=43.76 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=41.9
Q ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 012772 319 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIP 378 (456)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~ 378 (456)
..+|++++|++.+++++.. .|++ ..++..++.+|...|++++|..++.+++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR-----NPDN---PEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH-----TTTS---HHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHH-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3578999999999998754 3444 56667899999999999999999998774
No 99
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.57 E-value=0.02 Score=55.44 Aligned_cols=66 Identities=14% Similarity=0.046 Sum_probs=58.1
Q ss_pred cHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 348 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 348 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
.....+..++.+|..+|++++|+..+++++.. .|.....++++|.++..+|++++|+..+++|+++
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l 127 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL 127 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 45677889999999999999999999999863 3445678999999999999999999999999875
No 100
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.57 E-value=0.031 Score=61.54 Aligned_cols=97 Identities=11% Similarity=-0.066 Sum_probs=73.9
Q ss_pred hhhhcCChHHHHHHHHHHHHHHHh--------hcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772 317 ALTSCGNHQEVVSTYKMIEKLQKK--------LYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 388 (456)
Q Consensus 317 ~~~~~g~~~~a~~~~~~~~~~~~~--------~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~h 388 (456)
.+.++|++++|+..++++...... .-.|+ .....+...++.++...|++++|++.+++++.. .
T Consensus 319 a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~-~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--------~ 389 (765)
T PRK10049 319 SLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPN-DDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--------A 389 (765)
T ss_pred HHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCC-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence 345789999999988887654210 01122 234566778999999999999999999988754 3
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772 389 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 422 (456)
Q Consensus 389 p~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~ 422 (456)
|.-...++.+|.++...|++++|++.|++|+++.
T Consensus 390 P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 390 PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 3334688999999999999999999999999864
No 101
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.53 E-value=0.024 Score=51.39 Aligned_cols=93 Identities=11% Similarity=0.085 Sum_probs=67.0
Q ss_pred cCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 012772 321 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK 400 (456)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~ 400 (456)
.++.++++..+++.++. .|+| ...+..|+.+|..+|++++|+..+++++.+ .|.-+..+..+|.
T Consensus 52 ~~~~~~~i~~l~~~L~~-----~P~~---~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~ 115 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA-----NPQN---SEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALAT 115 (198)
T ss_pred chhHHHHHHHHHHHHHH-----CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 34555666555555432 3444 668889999999999999999999999853 2444566788898
Q ss_pred HH-HHcCC--HHHHHHHHHHHHHHHHHhcCCCCchHH
Q 012772 401 LE-WFLGD--TENAIKSMTEAVEILRITHGTNSPFMK 434 (456)
Q Consensus 401 ~~-~~~g~--~~eA~~~l~~Al~i~~~~~G~~h~~~~ 434 (456)
++ ...|+ +++|...+++|++. .|+++...
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~-----dP~~~~al 147 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALAL-----DANEVTAL 147 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHh-----CCCChhHH
Confidence 64 66777 59999999999874 45555443
No 102
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.53 E-value=0.2 Score=40.62 Aligned_cols=113 Identities=16% Similarity=0.168 Sum_probs=78.6
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCC---cc--HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772 314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFS---VN--LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 388 (456)
Q Consensus 314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h---~~--~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~h 388 (456)
++.+-...|-|++|..-++++.++.+++ +|.. +. =+-.+..|+.++..+|+|++++.-..++|.-+.+ -|.-|
T Consensus 15 ~ae~ql~~g~~~eAa~s~r~AM~~srti-P~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR-RGEL~ 92 (144)
T PF12968_consen 15 DAERQLQDGAYEEAAASCRKAMEVSRTI-PAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR-RGELH 92 (144)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHHTTS--TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-H--TT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccC-ChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh-ccccc
Confidence 3444445688999999999998876544 3332 11 2334567888999999999999999999986664 57777
Q ss_pred hHHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 012772 389 PLLGLQY----YTCGKLEWFLGDTENAIKSMTEAVEILRITHGT 428 (456)
Q Consensus 389 p~~~~~l----~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~ 428 (456)
-+-|..+ ++-|..+...|+.+||.+.|+.|-+++...-|.
T Consensus 93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE 136 (144)
T PF12968_consen 93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGE 136 (144)
T ss_dssp STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S-
T ss_pred cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Confidence 7766543 445777778999999999999999998877664
No 103
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.42 E-value=0.012 Score=56.20 Aligned_cols=101 Identities=17% Similarity=0.234 Sum_probs=71.2
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772 313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 392 (456)
Q Consensus 313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~ 392 (456)
..|..+...|++++|++.++++++. .|+|+.+ +..++.+++..|+.+++.+......... +.+|.
T Consensus 151 ~~a~~~~~~G~~~~A~~~~~~al~~-----~P~~~~~---~~~l~~~li~~~~~~~~~~~l~~~~~~~-----~~~~~-- 215 (280)
T PF13429_consen 151 ALAEIYEQLGDPDKALRDYRKALEL-----DPDDPDA---RNALAWLLIDMGDYDEAREALKRLLKAA-----PDDPD-- 215 (280)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHH------TT-HHH---HHHHHHHHCTTCHHHHHHHHHHHHHHH------HTSCC--
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHH---HHHHHHHHHHCCChHHHHHHHHHHHHHC-----cCHHH--
Confidence 3455566789999999999999864 4666554 4568888999999998777766554432 34443
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHH
Q 012772 393 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK 434 (456)
Q Consensus 393 ~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~ 434 (456)
.+..+|.++..+|++++|+.+|++++. ..|++|.+.
T Consensus 216 -~~~~la~~~~~lg~~~~Al~~~~~~~~-----~~p~d~~~~ 251 (280)
T PF13429_consen 216 -LWDALAAAYLQLGRYEEALEYLEKALK-----LNPDDPLWL 251 (280)
T ss_dssp -HCHHHHHHHHHHT-HHHHHHHHHHHHH-----HSTT-HHHH
T ss_pred -HHHHHHHHhcccccccccccccccccc-----ccccccccc
Confidence 356779999999999999999999775 345666554
No 104
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.41 E-value=0.0082 Score=37.14 Aligned_cols=31 Identities=32% Similarity=0.493 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772 392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 422 (456)
Q Consensus 392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~ 422 (456)
+..++++|.++..+|++++|+..+++|+++-
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 4578999999999999999999999999873
No 105
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=96.41 E-value=0.03 Score=56.86 Aligned_cols=90 Identities=10% Similarity=-0.026 Sum_probs=61.5
Q ss_pred CChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 012772 322 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKL 401 (456)
Q Consensus 322 g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~ 401 (456)
++.+.+++..++.++ .+|+++. ...+..++.++..+|+|++|.++++++...- .+|.--. +..||.+
T Consensus 313 ~~~~~~~~~~e~~lk-----~~p~~~~-~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~------~~p~~~~-~~~La~l 379 (409)
T TIGR00540 313 EDNEKLEKLIEKQAK-----NVDDKPK-CCINRALGQLLMKHGEFIEAADAFKNVAACK------EQLDAND-LAMAADA 379 (409)
T ss_pred CChHHHHHHHHHHHH-----hCCCChh-HHHHHHHHHHHHHcccHHHHHHHHHHhHHhh------cCCCHHH-HHHHHHH
Confidence 344444444444432 3567765 5677889999999999999999988533221 1333222 3378999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHH
Q 012772 402 EWFLGDTENAIKSMTEAVEILRI 424 (456)
Q Consensus 402 ~~~~g~~~eA~~~l~~Al~i~~~ 424 (456)
+..+|+.++|.+++++++..+-.
T Consensus 380 l~~~g~~~~A~~~~~~~l~~~~~ 402 (409)
T TIGR00540 380 FDQAGDKAEAAAMRQDSLGLMLA 402 (409)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999876654
No 106
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.39 E-value=0.028 Score=61.73 Aligned_cols=60 Identities=20% Similarity=0.127 Sum_probs=31.7
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 354 EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 354 ~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
..++.+|..+|+|++|++++++++. ..|.+ |. .+..|+.++...|+.++|++.++++...
T Consensus 106 lalA~ly~~~gdyd~Aiely~kaL~----~dP~n-~~---~l~gLa~~y~~~~q~~eAl~~l~~l~~~ 165 (822)
T PRK14574 106 ASAARAYRNEKRWDQALALWQSSLK----KDPTN-PD---LISGMIMTQADAGRGGVVLKQATELAER 165 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh----hCCCC-HH---HHHHHHHHHhhcCCHHHHHHHHHHhccc
Confidence 3445556666666666666666553 12222 32 2234566666666666666666555443
No 107
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.36 E-value=0.029 Score=60.36 Aligned_cols=99 Identities=12% Similarity=0.020 Sum_probs=77.2
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772 312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 391 (456)
Q Consensus 312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~ 391 (456)
+-.|..++..|+|..+..+...++... .+.+...+..+.+|..|..+|+|++|-.||.+++..- ++| .
T Consensus 274 ~~LAn~fyfK~dy~~v~~la~~ai~~t-----~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-----~d~--~ 341 (1018)
T KOG2002|consen 274 NHLANHFYFKKDYERVWHLAEHAIKNT-----ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-----NDN--F 341 (1018)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-----CCC--c
Confidence 345566778889988888877765432 2345567889999999999999999999999887531 222 5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772 392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 422 (456)
Q Consensus 392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~ 422 (456)
...++.||+.|.+.|++++|...+++.+..+
T Consensus 342 ~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~ 372 (1018)
T KOG2002|consen 342 VLPLVGLGQMYIKRGDLEESKFCFEKVLKQL 372 (1018)
T ss_pred cccccchhHHHHHhchHHHHHHHHHHHHHhC
Confidence 6678899999999999999999998877654
No 108
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=96.35 E-value=0.0052 Score=42.28 Aligned_cols=45 Identities=22% Similarity=0.491 Sum_probs=37.5
Q ss_pred CcCcCCC---CCCccCcCCCCcccccHHhhhhcHHHhHHhchhhHhch
Q 012772 30 CDGCFAS---SNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLD 74 (456)
Q Consensus 30 C~~C~~~---~~~~~C~~C~~v~yCs~~C~~~~~~~H~~EC~~l~~l~ 74 (456)
|..|... ...+.|+.|+++.|||++=...|...|+--|..|+...
T Consensus 2 Cpv~~~~~~~~v~~~Cp~cGipthcS~ehw~~D~e~H~~~c~~LRqvN 49 (55)
T PF13824_consen 2 CPVCKKDLPAHVNFECPDCGIPTHCSEEHWEDDYEEHRQLCERLRQVN 49 (55)
T ss_pred CCCCccccccccCCcCCCCCCcCccCHHHHHHhHHHHHHHHHHHHHhc
Confidence 6677664 23578999999999999999888889999999998754
No 109
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.34 E-value=0.014 Score=50.16 Aligned_cols=74 Identities=18% Similarity=0.141 Sum_probs=63.2
Q ss_pred ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 012772 347 VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH 426 (456)
Q Consensus 347 ~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~ 426 (456)
...++..+.++..+...|++++|..+++-+.. ..|....-+++||.++..+|++++|+..|.+|..+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--------~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----- 98 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTI--------YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI----- 98 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 56788889999999999999999999987653 56777888999999999999999999999999875
Q ss_pred CCCCchH
Q 012772 427 GTNSPFM 433 (456)
Q Consensus 427 G~~h~~~ 433 (456)
.+++|..
T Consensus 99 ~~ddp~~ 105 (157)
T PRK15363 99 KIDAPQA 105 (157)
T ss_pred CCCCchH
Confidence 4566544
No 110
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.32 E-value=0.0097 Score=36.65 Aligned_cols=31 Identities=29% Similarity=0.454 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772 392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 422 (456)
Q Consensus 392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~ 422 (456)
+..++.+|.++..+|++++|++.+++|+++-
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 3578999999999999999999999999863
No 111
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=0.13 Score=52.76 Aligned_cols=126 Identities=19% Similarity=0.156 Sum_probs=88.1
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHH--------------
Q 012772 313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIP-------------- 378 (456)
Q Consensus 313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~-------------- 378 (456)
++|=-.+..++.++|+..++. +.+... .++.--++++.++|+|++|++.|+.++.
T Consensus 84 EKAYc~Yrlnk~Dealk~~~~--------~~~~~~---~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl 152 (652)
T KOG2376|consen 84 EKAYCEYRLNKLDEALKTLKG--------LDRLDD---KLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANL 152 (652)
T ss_pred HHHHHHHHcccHHHHHHHHhc--------ccccch---HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 444445566777777765441 222222 2344457788889999999998886621
Q ss_pred --------H-HHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHh
Q 012772 379 --------V-YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY 449 (456)
Q Consensus 379 --------~-~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~~~ 449 (456)
+ .....|..--..=..+||.|-++...|+|.+|++.|++|+.|-..++-.+..--.++...|+-++-.+-|
T Consensus 153 ~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlay 232 (652)
T KOG2376|consen 153 LAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAY 232 (652)
T ss_pred HHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHH
Confidence 1 1223333333355689999999999999999999999999999998877776667777888887777666
No 112
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.29 E-value=0.0076 Score=62.06 Aligned_cols=86 Identities=19% Similarity=0.166 Sum_probs=60.5
Q ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 012772 320 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG 399 (456)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La 399 (456)
-|++++.|++.+++++.+ ++....++.-++.-+....+|+.|..+++++|.+ .|.-=.++|.||
T Consensus 433 LQkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--------~~rhYnAwYGlG 496 (638)
T KOG1126|consen 433 LQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--------DPRHYNAWYGLG 496 (638)
T ss_pred hhhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--------CchhhHHHHhhh
Confidence 367788888888777643 3334555666777777778888888888877743 333345677788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHH
Q 012772 400 KLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 400 ~~~~~~g~~~eA~~~l~~Al~i 421 (456)
.+|.++++++.|+-+|++|++|
T Consensus 497 ~vy~Kqek~e~Ae~~fqkA~~I 518 (638)
T KOG1126|consen 497 TVYLKQEKLEFAEFHFQKAVEI 518 (638)
T ss_pred hheeccchhhHHHHHHHhhhcC
Confidence 8888888888888777777765
No 113
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.29 E-value=0.011 Score=37.33 Aligned_cols=31 Identities=16% Similarity=0.348 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 012772 352 TREKLIKILMELEDWKEALAYCQLTIPVYQR 382 (456)
Q Consensus 352 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~ 382 (456)
++.+|+.+|..+|+|++|+++++++|.+.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4678999999999999999999999876553
No 114
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=0.03 Score=55.99 Aligned_cols=102 Identities=22% Similarity=0.225 Sum_probs=74.5
Q ss_pred HHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q 012772 315 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 394 (456)
Q Consensus 315 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~ 394 (456)
|..+.+|++|++|++.|..++++. ...|-.+...+-..+....+..=.+++.+|+.+++++++ -.|.--..
T Consensus 469 AeiLtDqqqFd~A~k~YD~ai~LE-~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e--------~Dpkce~A 539 (606)
T KOG0547|consen 469 AEILTDQQQFDKAVKQYDKAIELE-PREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIE--------LDPKCEQA 539 (606)
T ss_pred HHHHhhHHhHHHHHHHHHHHHhhc-cccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHc--------cCchHHHH
Confidence 344678899999999999998764 333333333333333333333334899999999999985 46667788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 012772 395 YYTCGKLEWFLGDTENAIKSMTEAVEILRIT 425 (456)
Q Consensus 395 l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~ 425 (456)
+-.||++...+|+.++|+++++++...-+..
T Consensus 540 ~~tlaq~~lQ~~~i~eAielFEksa~lArt~ 570 (606)
T KOG0547|consen 540 YETLAQFELQRGKIDEAIELFEKSAQLARTE 570 (606)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence 8999999999999999999999998765543
No 115
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.17 E-value=0.074 Score=50.93 Aligned_cols=113 Identities=16% Similarity=0.134 Sum_probs=83.4
Q ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHHh--cCCCC----hHHH
Q 012772 320 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE-DWKEALAYCQLTIPVYQRV--YPQFH----PLLG 392 (456)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g-~~~~A~~~~~~~l~~~e~~--~g~~h----p~~~ 392 (456)
.+|+++.|..++.++........+..-..+.+..+++|.-....+ ++++|..+.++++++.+.. ....| ....
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 578999999999999776542223333458888899999999999 9999999999999997652 11333 4567
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHH
Q 012772 393 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK 434 (456)
Q Consensus 393 ~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~ 434 (456)
..+..|+.++...+..+...+ -.++++.++..+| +||.+.
T Consensus 85 ~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~~~ 124 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPEVF 124 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcHHH
Confidence 788889999988887654333 5667777777777 465554
No 116
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=96.15 E-value=0.0041 Score=61.87 Aligned_cols=39 Identities=28% Similarity=0.333 Sum_probs=31.7
Q ss_pred ccccCCCcCCCeeEE--eC------CEEEEEEecCCCCCCcccCChh
Q 012772 220 SIINHSCLPNAVLVF--EG------RLAVVRAVQHVPKGAEGQFDDI 258 (456)
Q Consensus 220 sl~NHSC~PN~~~~f--~~------~~~~vra~~~I~~Gee~~~~~~ 258 (456)
=++||||.||+.+.+ .+ -++.+-|+++|++|+|+||++-
T Consensus 274 RfinHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg 320 (364)
T KOG1082|consen 274 RFINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYG 320 (364)
T ss_pred ccccCCCCccceeeeeeecCCccchheeeeeeccccCCCcccchhhc
Confidence 478999999998864 33 2567889999999999997654
No 117
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.14 E-value=0.086 Score=41.40 Aligned_cols=83 Identities=16% Similarity=0.160 Sum_probs=63.6
Q ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 012772 360 LMELEDWKEALAYCQLTIPVYQRVYPQF-HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELIL 438 (456)
Q Consensus 360 ~~~~g~~~~A~~~~~~~l~~~e~~~g~~-hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~ 438 (456)
....|+|.+|.+...+..+....-.... .-.....+.++|.++...|++++|...+++|+++-+..- |..-....+.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~--D~~~l~~al~ 85 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG--DRRCLAYALS 85 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC--CHHHHHHHHH
Confidence 3467999999999999998766554433 234667789999999999999999999999999999863 4445555555
Q ss_pred HHHHHH
Q 012772 439 KLEEAQ 444 (456)
Q Consensus 439 ~l~~~~ 444 (456)
-+..+.
T Consensus 86 ~~~~l~ 91 (94)
T PF12862_consen 86 WLANLL 91 (94)
T ss_pred HHHHHh
Confidence 555443
No 118
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.11 E-value=0.19 Score=46.16 Aligned_cols=106 Identities=9% Similarity=0.038 Sum_probs=72.9
Q ss_pred HHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q 012772 315 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 394 (456)
Q Consensus 315 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~ 394 (456)
|..+....+|++|...+.++.+-++..-.+ .+-+.++..++.+..++..|.|+.++++++..+|... ..|+++..
T Consensus 38 AvafRnAk~feKakdcLlkA~~~yEnnrsl--fhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~---GspdtAAm 112 (308)
T KOG1585|consen 38 AVAFRNAKKFEKAKDCLLKASKGYENNRSL--FHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC---GSPDTAAM 112 (308)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh---CCcchHHH
Confidence 344555567888877766666555432222 2257788888889999999999999999999988753 44555543
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 012772 395 YYTCGKLEWFLGDTENAIKSMTEAVEILRIT 425 (456)
Q Consensus 395 l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~ 425 (456)
-.+-|-=..+..+.++|+.+|++|+++++..
T Consensus 113 aleKAak~lenv~Pd~AlqlYqralavve~~ 143 (308)
T KOG1585|consen 113 ALEKAAKALENVKPDDALQLYQRALAVVEED 143 (308)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Confidence 3333333346677788888888888888764
No 119
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.10 E-value=0.31 Score=40.38 Aligned_cols=120 Identities=17% Similarity=0.128 Sum_probs=88.3
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 012772 314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 393 (456)
Q Consensus 314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~ 393 (456)
++..+-+.|+.+.|++.|.+++.+. | ....++++-++++.-+|+-++|++-..+++++ -|+-....-.
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~-----P---~raSayNNRAQa~RLq~~~e~ALdDLn~AleL----ag~~trtacq 116 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLA-----P---ERASAYNNRAQALRLQGDDEEALDDLNKALEL----AGDQTRTACQ 116 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhc-----c---cchHhhccHHHHHHHcCChHHHHHHHHHHHHh----cCccchHHHH
Confidence 4444556799999999999988653 2 34678899999999999999999999998863 4555555556
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----hcCCCCchHHHHHHHHHHHHH
Q 012772 394 QYYTCGKLEWFLGDTENAIKSMTEAVEILRI----THGTNSPFMKELILKLEEAQA 445 (456)
Q Consensus 394 ~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~----~~G~~h~~~~~~~~~l~~~~~ 445 (456)
.+..=|.+|..+|+.+.|..-++.|-++=.. -+=.=+|+..---.||+++-.
T Consensus 117 a~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr~QLV~lNPYAAlCN~MLa~~f~ 172 (175)
T KOG4555|consen 117 AFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAREQLVELNPYAALCNQMLADAFD 172 (175)
T ss_pred HHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 7788899999999999999999988764211 011124555555566666543
No 120
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.086 Score=51.74 Aligned_cols=99 Identities=12% Similarity=0.134 Sum_probs=82.7
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCcc-HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772 313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN-LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 391 (456)
Q Consensus 313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~-~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~ 391 (456)
+.+.....+|++..|.+.|..++.+ .|+|.. .+.++.+.+.+...+|+..+|+.-|..++.+ .+..
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~i-----dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--------D~sy 320 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNI-----DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--------DSSY 320 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcC-----CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--------CHHH
Confidence 3445566789999999999988764 466655 6778899999999999999999999999864 5677
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012772 392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 424 (456)
Q Consensus 392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~ 424 (456)
...|..=|..+..++++++|+..|++|++.-.-
T Consensus 321 ikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 321 IKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 778888899999999999999999999986543
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.08 E-value=0.037 Score=51.05 Aligned_cols=87 Identities=22% Similarity=0.187 Sum_probs=70.1
Q ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 012772 318 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 397 (456)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~ 397 (456)
....|++.+|+..++++.. +.|++ .++++.++.+|.+.|++++|..-+.+++++ .| ..| ..++|
T Consensus 110 ~~~~g~~~~A~~~~rkA~~-----l~p~d---~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L----~~-~~p---~~~nN 173 (257)
T COG5010 110 QIRNGNFGEAVSVLRKAAR-----LAPTD---WEAWNLLGAALDQLGRFDEARRAYRQALEL----AP-NEP---SIANN 173 (257)
T ss_pred HHHhcchHHHHHHHHHHhc-----cCCCC---hhhhhHHHHHHHHccChhHHHHHHHHHHHh----cc-CCc---hhhhh
Confidence 3457999999998888754 33444 566788999999999999999999999874 22 333 35789
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 012772 398 CGKLEWFLGDTENAIKSMTEAVE 420 (456)
Q Consensus 398 La~~~~~~g~~~eA~~~l~~Al~ 420 (456)
||..+.-.|+++.|++++.+|..
T Consensus 174 lgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 174 LGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999998753
No 122
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.07 Score=53.10 Aligned_cols=85 Identities=16% Similarity=0.105 Sum_probs=47.4
Q ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 012772 320 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG 399 (456)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La 399 (456)
+-.+...|++.|++++++. |.=.++.+.||++|.-++...-|+-|+++++.. -|+.+ ..+..||
T Consensus 376 EmKNt~AAi~sYRrAvdi~--------p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-----kPnDs---Rlw~aLG 439 (559)
T KOG1155|consen 376 EMKNTHAAIESYRRAVDIN--------PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-----KPNDS---RLWVALG 439 (559)
T ss_pred HhcccHHHHHHHHHHHhcC--------chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-----CCCch---HHHHHHH
Confidence 3445567777777776542 222455566666666666666666666655531 12222 2344556
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 012772 400 KLEWFLGDTENAIKSMTEAVE 420 (456)
Q Consensus 400 ~~~~~~g~~~eA~~~l~~Al~ 420 (456)
..|..+++.++|++.|.+|+.
T Consensus 440 ~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 440 ECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHHhccHHHHHHHHHHHHh
Confidence 666666666666666666654
No 123
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=96.04 E-value=0.063 Score=51.08 Aligned_cols=95 Identities=11% Similarity=0.029 Sum_probs=73.5
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772 313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 392 (456)
Q Consensus 313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~ 392 (456)
+.|..+....+++.|...+++++.. ++.-+++-..++.+....|+|+.|++..++++. .++-.++
T Consensus 185 ELAq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e-------Qn~~yl~ 249 (389)
T COG2956 185 ELAQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVELAKGDYQKAVEALERVLE-------QNPEYLS 249 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHHHhccchHHHHHHHHHHHH-------hChHHHH
Confidence 3444455556778888887777642 455566667789999999999998887666554 5778888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772 393 LQYYTCGKLEWFLGDTENAIKSMTEAVEIL 422 (456)
Q Consensus 393 ~~l~~La~~~~~~g~~~eA~~~l~~Al~i~ 422 (456)
..+..|...|..+|+.++++..|.++.+..
T Consensus 250 evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 250 EVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 899999999999999999999999887653
No 124
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.02 E-value=0.017 Score=35.67 Aligned_cols=32 Identities=34% Similarity=0.490 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012772 392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 423 (456)
Q Consensus 392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~ 423 (456)
+..++.+|.++..+|++++|.++|++|+++-.
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 35789999999999999999999999998753
No 125
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.97 E-value=0.033 Score=55.73 Aligned_cols=63 Identities=14% Similarity=0.066 Sum_probs=53.8
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 012772 312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV 379 (456)
Q Consensus 312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~ 379 (456)
...+..+...|+|++|+..|++++++ .|++.....++++++.+|..+|++++|++.+++++++
T Consensus 79 ~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 79 VNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34455677889999999999999864 4777666577899999999999999999999999997
No 126
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=95.93 E-value=0.03 Score=55.29 Aligned_cols=74 Identities=11% Similarity=0.008 Sum_probs=62.7
Q ss_pred cCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 342 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 342 l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
..+.++........++.++..+|++++|+..+++++.. - +.+ ...+..+|.++...|++++|+.+++++++.
T Consensus 106 ~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~----~-p~~---~~~~~~la~i~~~~g~~~eA~~~l~~~l~~ 177 (355)
T cd05804 106 WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL----N-PDD---AWAVHAVAHVLEMQGRFKEGIAFMESWRDT 177 (355)
T ss_pred cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----C-CCC---cHHHHHHHHHHHHcCCHHHHHHHHHhhhhc
Confidence 56778888888888999999999999999999999874 2 222 567888999999999999999999999886
Q ss_pred HH
Q 012772 422 LR 423 (456)
Q Consensus 422 ~~ 423 (456)
..
T Consensus 178 ~~ 179 (355)
T cd05804 178 WD 179 (355)
T ss_pred cC
Confidence 54
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=95.88 E-value=0.12 Score=51.84 Aligned_cols=91 Identities=16% Similarity=0.147 Sum_probs=68.3
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772 313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 392 (456)
Q Consensus 313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~ 392 (456)
..|.....-|++++|+..+..+++ -.|+|+.+.. ..+.++++.++..+|.+.+++++.. + |...
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~-----~~P~N~~~~~---~~~~i~~~~nk~~~A~e~~~kal~l----~----P~~~ 374 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIA-----AQPDNPYYLE---LAGDILLEANKAKEAIERLKKALAL----D----PNSP 374 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHH-----hCCCCHHHHH---HHHHHHHHcCChHHHHHHHHHHHhc----C----CCcc
Confidence 445555566778888777666543 3578877765 4678899999999999999999853 2 3335
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012772 393 LQYYTCGKLEWFLGDTENAIKSMTEAV 419 (456)
Q Consensus 393 ~~l~~La~~~~~~g~~~eA~~~l~~Al 419 (456)
..-.++|.++++.|+..+|+..|.+.+
T Consensus 375 ~l~~~~a~all~~g~~~eai~~L~~~~ 401 (484)
T COG4783 375 LLQLNLAQALLKGGKPQEAIRILNRYL 401 (484)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHh
Confidence 667788999999999998887777654
No 128
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.86 E-value=0.13 Score=55.03 Aligned_cols=98 Identities=18% Similarity=0.125 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 012772 307 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ 386 (456)
Q Consensus 307 ~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~ 386 (456)
++..++.+|..+..+|++++|++++..+++. +|.-..++..||.+|-++|+.++|+.....+-. +-|.
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH----L~p~ 205 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQ--------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH----LNPK 205 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHh----cCCC
Confidence 4666777788888889999999998888653 223345666777777777777776666443321 2222
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772 387 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 420 (456)
Q Consensus 387 ~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~ 420 (456)
++ -.+..+|.....+|++++|.-+|.||+.
T Consensus 206 d~----e~W~~ladls~~~~~i~qA~~cy~rAI~ 235 (895)
T KOG2076|consen 206 DY----ELWKRLADLSEQLGNINQARYCYSRAIQ 235 (895)
T ss_pred Ch----HHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 33 3355555555566666666666666554
No 129
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=95.80 E-value=0.023 Score=54.34 Aligned_cols=94 Identities=21% Similarity=0.283 Sum_probs=51.7
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 012772 314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 393 (456)
Q Consensus 314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~ 393 (456)
.+..+...|+++++.++++...... |.++.+ ...++.+|..+|++++|+.++++++. ..+.+| .
T Consensus 186 l~~~li~~~~~~~~~~~l~~~~~~~-----~~~~~~---~~~la~~~~~lg~~~~Al~~~~~~~~-----~~p~d~---~ 249 (280)
T PF13429_consen 186 LAWLLIDMGDYDEAREALKRLLKAA-----PDDPDL---WDALAAAYLQLGRYEEALEYLEKALK-----LNPDDP---L 249 (280)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHH------HTSCCH---CHHHHHHHHHHT-HHHHHHHHHHHHH-----HSTT-H---H
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHC-----cCHHHH---HHHHHHHhcccccccccccccccccc-----cccccc---c
Confidence 3445667888888777666654332 566654 35789999999999999999999773 234444 4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012772 394 QYYTCGKLEWFLGDTENAIKSMTEAVEILR 423 (456)
Q Consensus 394 ~l~~La~~~~~~g~~~eA~~~l~~Al~i~~ 423 (456)
.+..+|.++...|+.++|..++++|+.-+.
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~~l~ 279 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALRLLR 279 (280)
T ss_dssp HHHHHHHHHT--------------------
T ss_pred cccccccccccccccccccccccccccccC
Confidence 567889999999999999999999987654
No 130
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.21 Score=49.86 Aligned_cols=103 Identities=17% Similarity=0.039 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Q 012772 326 EVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFL 405 (456)
Q Consensus 326 ~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~ 405 (456)
=|+-.++++. .+-|+++. ++..||+.|.++++.++|+..+.+++.. |.. -+..|+.||++|-++
T Consensus 416 YaLyYfqkA~-----~~kPnDsR---lw~aLG~CY~kl~~~~eAiKCykrai~~-----~dt---e~~~l~~LakLye~l 479 (559)
T KOG1155|consen 416 YALYYFQKAL-----ELKPNDSR---LWVALGECYEKLNRLEEAIKCYKRAILL-----GDT---EGSALVRLAKLYEEL 479 (559)
T ss_pred HHHHHHHHHH-----hcCCCchH---HHHHHHHHHHHhccHHHHHHHHHHHHhc-----ccc---chHHHHHHHHHHHHH
Confidence 3344455553 35677754 4567999999999999999999998753 222 578999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 012772 406 GDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA 445 (456)
Q Consensus 406 g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~ 445 (456)
+++++|..+|++-++.. ..-|...|.+.....-|+.-..
T Consensus 480 ~d~~eAa~~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~ 518 (559)
T KOG1155|consen 480 KDLNEAAQYYEKYVEVS-ELEGEIDDETIKARLFLAEYFK 518 (559)
T ss_pred HhHHHHHHHHHHHHHHH-HhhcccchHHHHHHHHHHHHHH
Confidence 99999999999999988 4457777777776666665543
No 131
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.75 E-value=0.14 Score=48.00 Aligned_cols=86 Identities=12% Similarity=0.082 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 012772 349 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT 428 (456)
Q Consensus 349 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~ 428 (456)
........+..+...|+|++|++.+++++. .+| ..|......+.||.++..++++++|+..+++.++. =|
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~----~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~-----~P 100 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDN----RYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NP 100 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----Cc
Confidence 344556777888889999999999998876 454 45888888999999999999999999999998764 37
Q ss_pred CCchHHHHHHHHHHHH
Q 012772 429 NSPFMKELILKLEEAQ 444 (456)
Q Consensus 429 ~h~~~~~~~~~l~~~~ 444 (456)
+||.+..++.+++.+.
T Consensus 101 ~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 101 THPNIDYVLYMRGLTN 116 (243)
T ss_pred CCCchHHHHHHHHHhh
Confidence 8888888888877654
No 132
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.73 E-value=0.017 Score=44.17 Aligned_cols=50 Identities=16% Similarity=0.311 Sum_probs=40.4
Q ss_pred HccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 012772 362 ELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTE 417 (456)
Q Consensus 362 ~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~ 417 (456)
++|+|++|+.++++++..... .+ -...++.||.++..+|++++|...+++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 368999999999999875432 33 455777799999999999999999988
No 133
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.69 E-value=0.21 Score=49.54 Aligned_cols=54 Identities=15% Similarity=0.139 Sum_probs=44.2
Q ss_pred ccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012772 363 LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 424 (456)
Q Consensus 363 ~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~ 424 (456)
.|++++|.++++.+|. +...-...++++|..+-.+|++++|++.+-+-..|+..
T Consensus 503 ngd~dka~~~ykeal~--------ndasc~ealfniglt~e~~~~ldeald~f~klh~il~n 556 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN 556 (840)
T ss_pred cCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh
Confidence 4788888888887773 55666778999999999999999999999888777754
No 134
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.62 E-value=0.058 Score=53.62 Aligned_cols=60 Identities=20% Similarity=0.221 Sum_probs=50.8
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 354 EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 354 ~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
...|..+...|+|++|++++.+++.. .|.-...++++|.++..+|++++|+..+++|+++
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l 65 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL 65 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34567778889999999999999863 3334567899999999999999999999999986
No 135
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.19 Score=49.46 Aligned_cols=134 Identities=18% Similarity=0.237 Sum_probs=95.5
Q ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH------Hhc
Q 012772 311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ------RVY 384 (456)
Q Consensus 311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e------~~~ 384 (456)
++=+...+..-|+.++|+-.|+.+..+ -|..++++..|...|...|.+.+|......++..+. +++
T Consensus 337 lilKG~lL~~~~R~~~A~IaFR~Aq~L--------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~ 408 (564)
T KOG1174|consen 337 LILKGRLLIALERHTQAVIAFRTAQML--------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLF 408 (564)
T ss_pred HHhccHHHHhccchHHHHHHHHHHHhc--------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhh
Confidence 333444455667888888777777543 234678899999999999999999988876655442 233
Q ss_pred C----------------------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 012772 385 P----------------------QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE 442 (456)
Q Consensus 385 g----------------------~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~ 442 (456)
| .-.|...-..+.+|.++...|++++++++|++++.++.-.- =|....+++....+
T Consensus 409 g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~--LH~~Lgd~~~A~Ne 486 (564)
T KOG1174|consen 409 GTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN--LHNHLGDIMRAQNE 486 (564)
T ss_pred cceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH--HHHHHHHHHHHhhh
Confidence 3 12466666677788889999999999999999999876542 35556666666666
Q ss_pred HHHHHHhhhccC
Q 012772 443 AQAEASYKLSSK 454 (456)
Q Consensus 443 ~~~e~~~~~~~~ 454 (456)
.+..++|+++++
T Consensus 487 ~Q~am~~y~~AL 498 (564)
T KOG1174|consen 487 PQKAMEYYYKAL 498 (564)
T ss_pred HHHHHHHHHHHH
Confidence 677777777653
No 136
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.60 E-value=0.092 Score=49.01 Aligned_cols=89 Identities=21% Similarity=0.121 Sum_probs=73.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCch
Q 012772 353 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF 432 (456)
Q Consensus 353 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~ 432 (456)
.++.+.-+...|+|.+|..-++.-+.- .|..+.++..+|.||.++..+|++++|...|..+.. .| |+||-
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k----~~-P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK----DY-PKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHH----hC-CCCCC
Confidence 456666677889999999998877643 368889999999999999999999999999988877 44 47888
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 012772 433 MKELILKLEEAQAEASYKL 451 (456)
Q Consensus 433 ~~~~~~~l~~~~~e~~~~~ 451 (456)
.-+.+.+|+.+..++-+..
T Consensus 214 ApdallKlg~~~~~l~~~d 232 (262)
T COG1729 214 APDALLKLGVSLGRLGNTD 232 (262)
T ss_pred ChHHHHHHHHHHHHhcCHH
Confidence 8899999999887776543
No 137
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.58 E-value=0.056 Score=51.73 Aligned_cols=95 Identities=13% Similarity=0.127 Sum_probs=68.9
Q ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH
Q 012772 311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 390 (456)
Q Consensus 311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~ 390 (456)
+-+....|..||+|++|++.|.+... +.|.|+.+. .+-+.+|.++..|..|..-|..++.+-+..
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia-----~~P~NpV~~---~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y------- 164 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIA-----VYPHNPVYH---INRALAYLKQKSFAQAEEDCEAAIALDKLY------- 164 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhc-----cCCCCccch---hhHHHHHHHHHHHHHHHHhHHHHHHhhHHH-------
Confidence 45677788999999999999988764 456666543 456778999999999999999998764432
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 391 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 391 ~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
.-.|..=|.+...+|+..||.+-++.+|++
T Consensus 165 -~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 165 -VKAYSRRMQARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred -HHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence 223333455555667777777777777653
No 138
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.51 E-value=0.19 Score=48.58 Aligned_cols=119 Identities=13% Similarity=0.194 Sum_probs=87.6
Q ss_pred cCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc-CCCC-hHHHHHHHHH
Q 012772 321 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY-PQFH-PLLGLQYYTC 398 (456)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~-g~~h-p~~~~~l~~L 398 (456)
-+.++++++.++.+.++.... .+-..=+++.-.|+.++..+.|+++|+-|..+++++...+- +..| -..+..++.|
T Consensus 135 ls~fq~~Lesfe~A~~~A~~~--~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhm 212 (518)
T KOG1941|consen 135 LSVFQKALESFEKALRYAHNN--DDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHM 212 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhcc--CCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHH
Confidence 356778888888887654322 11122356677899999999999999999999999988653 4554 5678899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 012772 399 GKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 443 (456)
Q Consensus 399 a~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~ 443 (456)
+..+..+|.+..|.++-++|.++--. +| |-+....-+..++++
T Consensus 213 aValR~~G~LgdA~e~C~Ea~klal~-~G-dra~~arc~~~~aDI 255 (518)
T KOG1941|consen 213 AVALRLLGRLGDAMECCEEAMKLALQ-HG-DRALQARCLLCFADI 255 (518)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHH-hC-ChHHHHHHHHHHHHH
Confidence 99999999999999999999987655 56 334444444444444
No 139
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=95.48 E-value=0.0076 Score=64.81 Aligned_cols=41 Identities=34% Similarity=0.519 Sum_probs=33.3
Q ss_pred ccccCCCcCCCeeE---EeC-CEEEEEEecCCCCCCcccCChhhH
Q 012772 220 SIINHSCLPNAVLV---FEG-RLAVVRAVQHVPKGAEGQFDDIQE 260 (456)
Q Consensus 220 sl~NHSC~PN~~~~---f~~-~~~~vra~~~I~~Gee~~~~~~r~ 260 (456)
-.+||||.|||-.. .+| -++.|.|.+||++|||++|++.+.
T Consensus 1252 RfinhscKPNc~~qkwSVNG~~Rv~L~A~rDi~kGEELtYDYN~k 1296 (1306)
T KOG1083|consen 1252 RFINHSCKPNCEMQKWSVNGEYRVGLFALRDLPKGEELTYDYNFK 1296 (1306)
T ss_pred cccccccCCCCccccccccceeeeeeeecCCCCCCceEEEecccc
Confidence 35799999999654 344 468899999999999999987644
No 140
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.45 E-value=0.21 Score=37.31 Aligned_cols=70 Identities=16% Similarity=0.189 Sum_probs=54.6
Q ss_pred HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 012772 309 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRV 383 (456)
Q Consensus 309 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~ 383 (456)
...+++..+++.+-+.++|+..++++++.. ++.+....++..|+.+|.+.|+|+++++|..+=+++.+..
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~el 76 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEEL 76 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334455556677778889999988887653 2345688999999999999999999999998877776654
No 141
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=95.44 E-value=0.004 Score=65.06 Aligned_cols=60 Identities=27% Similarity=0.413 Sum_probs=38.2
Q ss_pred cccccCCCcCCCee--EEeCC------EEEEEEecCCCCCCcccCChhh-HHHhh-CCccccCC--CCCCCc
Q 012772 219 ISIINHSCLPNAVL--VFEGR------LAVVRAVQHVPKGAEGQFDDIQ-ESAIL-EGYRCKDD--GCSGFL 278 (456)
Q Consensus 219 ~sl~NHSC~PN~~~--~f~~~------~~~vra~~~I~~Gee~~~~~~r-~~~l~-~~f~C~C~--~C~~~~ 278 (456)
+-++||||+||..+ +|.++ .+.+-|.+-|++|.|+|.++.- ++..- ....|.|- .|.|.+
T Consensus 1190 GRfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~g~v~~keL~C~CGa~~CrgrL 1261 (1262)
T KOG1141|consen 1190 GRFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQGQVATKELTCHCGAENCRGRL 1261 (1262)
T ss_pred hhhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeeccccccccccceEEEecChhhhhccc
Confidence 35789999999987 46543 3455678889999999944321 22222 24567664 465543
No 142
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.40 E-value=0.13 Score=55.14 Aligned_cols=91 Identities=21% Similarity=0.170 Sum_probs=68.0
Q ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH
Q 012772 311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 390 (456)
Q Consensus 311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~ 390 (456)
..+.|..+...|++.+|+.++-.+... |... ..-++..+|..|..+|.+++|++++.++|. .-|+|.+
T Consensus 417 ~~d~a~al~~~~~~~~Al~~l~~i~~~------~~~~-~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~-----~~p~~~D 484 (895)
T KOG2076|consen 417 YLDLADALTNIGKYKEALRLLSPITNR------EGYQ-NAFVWYKLARCYMELGEYEEAIEFYEKVLI-----LAPDNLD 484 (895)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhcC------cccc-chhhhHHHHHHHHHHhhHHHHHHHHHHHHh-----cCCCchh
Confidence 456777888999999999987766431 1111 267788999999999999999999999984 3345544
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHH
Q 012772 391 LGLQYYTCGKLEWFLGDTENAIKSMT 416 (456)
Q Consensus 391 ~~~~l~~La~~~~~~g~~~eA~~~l~ 416 (456)
....|+.++..+|+.++|.+.++
T Consensus 485 ---~Ri~Lasl~~~~g~~EkalEtL~ 507 (895)
T KOG2076|consen 485 ---ARITLASLYQQLGNHEKALETLE 507 (895)
T ss_pred ---hhhhHHHHHHhcCCHHHHHHHHh
Confidence 56678889999999985544443
No 143
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=95.40 E-value=0.14 Score=51.71 Aligned_cols=98 Identities=5% Similarity=-0.026 Sum_probs=71.9
Q ss_pred HHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH---------------
Q 012772 315 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV--------------- 379 (456)
Q Consensus 315 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~--------------- 379 (456)
+..+..+|++++|+..++++.+ ..|+|+. ++..++.+|...|+|++|++.+.++...
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~-----~~P~~~~---al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a 231 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLE-----VAPRHPE---VLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQA 231 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHh-----cCCCCHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3345568999999998887754 4577764 4556789999999999999666555421
Q ss_pred H----H---------------HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772 380 Y----Q---------------RVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 420 (456)
Q Consensus 380 ~----e---------------~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~ 420 (456)
+ . +-+|..+|........+|..+...|+.++|.+.++++++
T Consensus 232 ~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~ 291 (398)
T PRK10747 232 WIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK 291 (398)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 0 0 123444555666777889999999999999999998876
No 144
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.37 E-value=0.35 Score=43.86 Aligned_cols=86 Identities=16% Similarity=0.079 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 012772 350 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN 429 (456)
Q Consensus 350 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~ 429 (456)
.+.+...|..+...|+|.+|++.+++++.. -|.+|......+.+|.++...|++++|+..+++-++ .| |+
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~-----~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~----~y-P~ 74 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDR-----YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK----LY-PN 74 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH----H--TT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HC-CC
Confidence 456678888899999999999999988754 257888999999999999999999999988887664 22 67
Q ss_pred CchHHHHHHHHHHHHH
Q 012772 430 SPFMKELILKLEEAQA 445 (456)
Q Consensus 430 h~~~~~~~~~l~~~~~ 445 (456)
||.+...+.+++.+.-
T Consensus 75 ~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 75 SPKADYALYMLGLSYY 90 (203)
T ss_dssp -TTHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHH
Confidence 8888888777776643
No 145
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.28 E-value=0.48 Score=42.09 Aligned_cols=97 Identities=12% Similarity=0.008 Sum_probs=69.7
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772 312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 391 (456)
Q Consensus 312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~ 391 (456)
++.|..+.+.+++++|+..++.++... .+.....-+...|+.+...+|.+++|+...... .++--.
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t-----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~---------~~~~w~ 158 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQT-----KDENLKALAALRLARVQLQQKKADAALKTLDTI---------KEESWA 158 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccc-----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc---------ccccHH
Confidence 456677788899999988777665321 112222334467899999999999998874432 244444
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772 392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 422 (456)
Q Consensus 392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~ 422 (456)
+...---|.++..+|+-++|++.|++|++..
T Consensus 159 ~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 159 AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 4455555999999999999999999999886
No 146
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.28 E-value=0.17 Score=46.67 Aligned_cols=69 Identities=19% Similarity=0.202 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012772 350 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 423 (456)
Q Consensus 350 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~ 423 (456)
.+++..|+.+|...|+|++|.-.+++++-+. -..|..|-.+|-.+|.+|. ..+++-|.++|.+|+++-.
T Consensus 154 ~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg----~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 154 QEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGG----AENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHhCh
Confidence 4677889999999999999999888877321 1222334444555555554 2357789999999998765
No 147
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=95.23 E-value=0.17 Score=51.16 Aligned_cols=62 Identities=18% Similarity=0.168 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772 352 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 422 (456)
Q Consensus 352 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~ 422 (456)
.+..++.++...|+|++|.+++++++.. +|.. ..+..||.++..+|+.++|..+|++++...
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~~--------~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALKQ--------RPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 3345566666666666666666665542 2222 113346666666666666666666665543
No 148
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.45 Score=48.32 Aligned_cols=92 Identities=20% Similarity=0.202 Sum_probs=76.9
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 012772 314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 393 (456)
Q Consensus 314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~ 393 (456)
++..+...|+|..|+..|-+++.. +|.-..++.|.+-+|..+|.+..|+.-++..++. +|...-
T Consensus 364 kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p~~~k 427 (539)
T KOG0548|consen 364 KGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DPNFIK 427 (539)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CchHHH
Confidence 444567889999999999887643 2555677889999999999999999999999876 888888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 394 QYYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 394 ~l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
.+..-|.++..+.+|++|++.|++|++.
T Consensus 428 gy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 428 AYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888899999999999999999988764
No 149
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.21 Score=45.69 Aligned_cols=92 Identities=15% Similarity=0.182 Sum_probs=74.7
Q ss_pred hhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q 012772 317 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY 396 (456)
Q Consensus 317 ~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~ 396 (456)
++....+|..|+..|-+++.+ +|..+..+.+=+..+.++.+|+.+..-|++++. ..|..+...+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--------l~~N~vk~h~ 82 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--------LDPNLVKAHY 82 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--------cChHHHHHHH
Confidence 344445788999988877643 444455566777889999999999999999986 4678889999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012772 397 TCGKLEWFLGDTENAIKSMTEAVEILRI 424 (456)
Q Consensus 397 ~La~~~~~~g~~~eA~~~l~~Al~i~~~ 424 (456)
.||...+....+.+|++.|++|...+..
T Consensus 83 flg~~~l~s~~~~eaI~~Lqra~sl~r~ 110 (284)
T KOG4642|consen 83 FLGQWLLQSKGYDEAIKVLQRAYSLLRE 110 (284)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHhc
Confidence 9999999999999999999999887664
No 150
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.09 E-value=0.11 Score=38.22 Aligned_cols=63 Identities=14% Similarity=0.129 Sum_probs=48.1
Q ss_pred hhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772 317 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 392 (456)
Q Consensus 317 ~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~ 392 (456)
.+..++++++|++.+++++.+ +|.+ ...+...|.++..+|+|.+|.+.+.+++.. .|+++...
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~-----~p~~---~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~-----~p~~~~~~ 66 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALEL-----DPDD---PELWLQRARCLFQLGRYEEALEDLERALEL-----SPDDPDAR 66 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHh-----Cccc---chhhHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCcHHHH
Confidence 355688999999999888754 4444 455677899999999999999999999843 34555543
No 151
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=95.01 E-value=1.3 Score=44.91 Aligned_cols=21 Identities=10% Similarity=-0.151 Sum_probs=10.3
Q ss_pred HHHHHHHccCHHHHHHHHHHH
Q 012772 356 LIKILMELEDWKEALAYCQLT 376 (456)
Q Consensus 356 L~~~~~~~g~~~~A~~~~~~~ 376 (456)
.+.++..+|++++|.+++.++
T Consensus 124 aA~aa~~~g~~~~A~~~l~~a 144 (409)
T TIGR00540 124 AAEAAQQRGDEARANQHLEEA 144 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444555555555555443
No 152
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=94.98 E-value=0.094 Score=54.66 Aligned_cols=68 Identities=19% Similarity=0.074 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 012772 350 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN 429 (456)
Q Consensus 350 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~ 429 (456)
..++..++......|++++|..++++++.+- |. +..+..+|+++...|+.++|...|++|+. +.|.
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~-----L~P~ 485 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE--------MS-WLNYVLLGKVYELKGDNRLAADAYSTAFN-----LRPG 485 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCC
Confidence 4667777777888899999999999998753 43 67899999999999999999999999976 3455
Q ss_pred Cc
Q 012772 430 SP 431 (456)
Q Consensus 430 h~ 431 (456)
+|
T Consensus 486 ~p 487 (517)
T PRK10153 486 EN 487 (517)
T ss_pred Cc
Confidence 55
No 153
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.94 E-value=0.068 Score=32.88 Aligned_cols=29 Identities=28% Similarity=0.427 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 012772 351 QTREKLIKILMELEDWKEALAYCQLTIPV 379 (456)
Q Consensus 351 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~ 379 (456)
+++.++|.+|..+|++++|+.++++++.+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 56789999999999999999999999976
No 154
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.90 E-value=0.25 Score=49.05 Aligned_cols=100 Identities=16% Similarity=0.093 Sum_probs=77.4
Q ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 012772 320 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG 399 (456)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La 399 (456)
..|++++|.+.|+.++. ++....+++.+++-.+-.+|++++|++.+.++-.+.. .-+..++++|
T Consensus 502 ~ngd~dka~~~ykeal~--------ndasc~ealfniglt~e~~~~ldeald~f~klh~il~--------nn~evl~qia 565 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILL--------NNAEVLVQIA 565 (840)
T ss_pred ecCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH--------hhHHHHHHHH
Confidence 55778888888877753 5666788999999999999999999999988776654 2366788999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 012772 400 KLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 443 (456)
Q Consensus 400 ~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~ 443 (456)
.+|-.+.+-.+|+++|-+|..+ =|+.|.+. .+|+++
T Consensus 566 niye~led~aqaie~~~q~~sl-----ip~dp~il---skl~dl 601 (840)
T KOG2003|consen 566 NIYELLEDPAQAIELLMQANSL-----IPNDPAIL---SKLADL 601 (840)
T ss_pred HHHHHhhCHHHHHHHHHHhccc-----CCCCHHHH---HHHHHH
Confidence 9999999999999999887653 35666544 444444
No 155
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.89 E-value=0.072 Score=34.02 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 012772 351 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 387 (456)
Q Consensus 351 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~ 387 (456)
+++..||.+....++|++|++=++++|.+.++++|++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 4677899999999999999999999999999999874
No 156
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.85 E-value=0.069 Score=50.36 Aligned_cols=59 Identities=12% Similarity=0.209 Sum_probs=51.0
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 012772 313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV 379 (456)
Q Consensus 313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~ 379 (456)
.+|..+.+-|.++.|++-++.++.+ ++...+++..|+.+|..+|++++|++.|+++|++
T Consensus 120 NRAAAy~~Lg~~~~AVkDce~Al~i--------Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel 178 (304)
T KOG0553|consen 120 NRAAAYSKLGEYEDAVKDCESALSI--------DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL 178 (304)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhc--------ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc
Confidence 4666777889999999988888754 6677899999999999999999999999999864
No 157
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=94.84 E-value=0.023 Score=52.53 Aligned_cols=40 Identities=25% Similarity=0.263 Sum_probs=33.8
Q ss_pred cccccCCCcCCCeeE---EeC-CEEEEEEecCCCCCCcccCChh
Q 012772 219 ISIINHSCLPNAVLV---FEG-RLAVVRAVQHVPKGAEGQFDDI 258 (456)
Q Consensus 219 ~sl~NHSC~PN~~~~---f~~-~~~~vra~~~I~~Gee~~~~~~ 258 (456)
+-|+|||=.+|+..- .+| .++++.|.++|.+|||++|++-
T Consensus 334 GRLINHS~~gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYDYG 377 (392)
T KOG1085|consen 334 GRLINHSVRGNLKTKVVEIDGSPHLILVARRDIAQGEELLYDYG 377 (392)
T ss_pred hhhhcccccCcceeeEEEecCCceEEEEeccccccchhhhhhcc
Confidence 468999999999654 345 5899999999999999998764
No 158
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.83 E-value=0.45 Score=37.25 Aligned_cols=81 Identities=14% Similarity=0.075 Sum_probs=62.1
Q ss_pred hcCChHHHHHHHHHHHHHHHhhcCCC-CccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 012772 320 SCGNHQEVVSTYKMIEKLQKKLYHPF-SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC 398 (456)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~l~p~-h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~L 398 (456)
..|++.+|++.+.+..........+. +.....+.-+++.+....|++++|+...++++.+.+.. .+...++..+..+
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~~~ 87 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALSWL 87 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHH
Confidence 46899999998888887765544333 22345566789999999999999999999999998865 6677777777777
Q ss_pred HHHH
Q 012772 399 GKLE 402 (456)
Q Consensus 399 a~~~ 402 (456)
+.+.
T Consensus 88 ~~l~ 91 (94)
T PF12862_consen 88 ANLL 91 (94)
T ss_pred HHHh
Confidence 6653
No 159
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.79 E-value=0.82 Score=47.21 Aligned_cols=123 Identities=16% Similarity=0.138 Sum_probs=94.4
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772 312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 391 (456)
Q Consensus 312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~ 391 (456)
..++.-...+|+.++|++.++++.... ..+..-+ .-....++-.+.-+++|++|.+++.++++ ...=..
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q-~~~~Ql~---~l~~~El~w~~~~~~~w~~A~~~f~~L~~-------~s~WSk 339 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQ-SEWKQLH---HLCYFELAWCHMFQHDWEEAAEYFLRLLK-------ESKWSK 339 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccch-hhHHhHH---HHHHHHHHHHHHHHchHHHHHHHHHHHHh-------ccccHH
Confidence 346666677899999999999877433 2233322 23456788889999999999999888765 233468
Q ss_pred HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 012772 392 GLQYYTCGKLEWFLGDT-------ENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA 445 (456)
Q Consensus 392 ~~~l~~La~~~~~~g~~-------~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~ 445 (456)
+...|-.|..+..+|+. ++|.+++.++-....+.-|+.-|.=.-+..+.+.-..
T Consensus 340 a~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~~~~~ 400 (468)
T PF10300_consen 340 AFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQKYEK 400 (468)
T ss_pred HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHh
Confidence 88899999999999998 8999999999999999999888877666666655443
No 160
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=94.76 E-value=0.55 Score=45.99 Aligned_cols=70 Identities=19% Similarity=0.176 Sum_probs=56.5
Q ss_pred cCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 342 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 342 l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
.||+++ .+...|+.+|.+.+.|.+|..+++.++.. ++ -+..+..+|.++..+|+.++|....++++..
T Consensus 323 ~h~~~p---~L~~tLG~L~~k~~~w~kA~~~leaAl~~-----~~----s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 323 QHPEDP---LLLSTLGRLALKNKLWGKASEALEAALKL-----RP----SASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hCCCCh---hHHHHHHHHHHHhhHHHHHHHHHHHHHhc-----CC----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 467777 55567899999999999999999988753 11 2567788999999999999999999999944
Q ss_pred HH
Q 012772 422 LR 423 (456)
Q Consensus 422 ~~ 423 (456)
..
T Consensus 391 ~~ 392 (400)
T COG3071 391 TR 392 (400)
T ss_pred hc
Confidence 43
No 161
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.72 E-value=0.23 Score=49.94 Aligned_cols=122 Identities=16% Similarity=0.162 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 012772 307 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ 386 (456)
Q Consensus 307 ~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~ 386 (456)
....+-.+...+...|+|++|++.|..++++. |+.+. -+.|.+..|..+|+|++-++.+.++|+
T Consensus 114 ~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~-----p~epi---FYsNraAcY~~lgd~~~Vied~TkALE-------- 177 (606)
T KOG0547|consen 114 YAAALKTKGNKFFRNKKYDEAIKYYTQAIELC-----PDEPI---FYSNRAACYESLGDWEKVIEDCTKALE-------- 177 (606)
T ss_pred HHHHHHhhhhhhhhcccHHHHHHHHHHHHhcC-----CCCch---hhhhHHHHHHHHhhHHHHHHHHHHHhh--------
Confidence 34455556677888999999999999998754 33322 246888999999999999999999985
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHHH
Q 012772 387 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS-PFMKELILKLEEAQA 445 (456)
Q Consensus 387 ~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h-~~~~~~~~~l~~~~~ 445 (456)
..|...-.|+.=|.++-.+|++.+|+.=+ -++-|++---+... |....++.+++.-..
T Consensus 178 l~P~Y~KAl~RRA~A~E~lg~~~eal~D~-tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka 236 (606)
T KOG0547|consen 178 LNPDYVKALLRRASAHEQLGKFDEALFDV-TVLCILEGFQNASIEPMAERVLKKQAMKKA 236 (606)
T ss_pred cCcHHHHHHHHHHHHHHhhccHHHHHHhh-hHHHHhhhcccchhHHHHHHHHHHHHHHHH
Confidence 57888999999999999999998886432 24444444333222 333445555444443
No 162
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=94.66 E-value=0.48 Score=51.66 Aligned_cols=91 Identities=15% Similarity=0.012 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhcC--
Q 012772 351 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR-ITHG-- 427 (456)
Q Consensus 351 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~-~~~G-- 427 (456)
.++..|+.++...|+++.|....++++. ..|.....|..|+.+|...|++++|.+++++..+.-. +..|
T Consensus 495 ~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--------~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s 566 (697)
T PLN03081 495 NMWAALLTACRIHKNLELGRLAAEKLYG--------MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACT 566 (697)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHhC--------CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCee
Confidence 3455666666666666666665555432 2233344677889999999999999999987665321 1111
Q ss_pred ---------------CCCchHHHHHHHHHHHHHHHHh
Q 012772 428 ---------------TNSPFMKELILKLEEAQAEASY 449 (456)
Q Consensus 428 ---------------~~h~~~~~~~~~l~~~~~e~~~ 449 (456)
..||...+++..|.++..++..
T Consensus 567 ~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 603 (697)
T PLN03081 567 WIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISE 603 (697)
T ss_pred EEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHH
Confidence 3599999999999988887765
No 163
>PLN03158 methionine aminopeptidase; Provisional
Probab=94.64 E-value=0.024 Score=56.72 Aligned_cols=38 Identities=26% Similarity=0.743 Sum_probs=30.6
Q ss_pred CCccCcCcCCCCCCccCcCCCC-------cccccHHhhhhcHHHhH
Q 012772 26 SISRCDGCFASSNLKKCSACQV-------VWYCGSNCQKLDWKLHR 64 (456)
Q Consensus 26 ~~~~C~~C~~~~~~~~C~~C~~-------v~yCs~~C~~~~~~~H~ 64 (456)
....|..|.+... ..|+.|.. .+|||++|.+.+|+.||
T Consensus 8 ~~~~c~~c~~~a~-l~Cp~C~k~~~~~~~s~fCsq~CFk~~w~~Hk 52 (396)
T PLN03158 8 SPLACARCSKPAH-LQCPKCLELKLPREGASFCSQDCFKAAWSSHK 52 (396)
T ss_pred CcccccCCCCccc-ccCccchhcCCCCCCceeECHHHHHHHHHHHH
Confidence 3566999998744 78998832 68999999999998775
No 164
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.35 Score=49.10 Aligned_cols=128 Identities=16% Similarity=0.170 Sum_probs=85.5
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH---------
Q 012772 312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR--------- 382 (456)
Q Consensus 312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~--------- 382 (456)
...|..+...|.+.+.+..+..+++......-..|. +..+...++.+|..+++++.|+.+++++|.-.+.
T Consensus 261 ~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~kl-Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~ 339 (539)
T KOG0548|consen 261 NNIAAVYLERGKYAECIELCEKAVEVGRELRADYKL-IAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKE 339 (539)
T ss_pred HHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHH-HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHH
Confidence 344555666777777766666655543322222222 6666666888999999999999999988765443
Q ss_pred ---h------cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Q 012772 383 ---V------YPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS 448 (456)
Q Consensus 383 ---~------~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~~ 448 (456)
. .....|..+.....-|.-++..|+|.+|+++|.+|+.-- |.-..++.+.+-|...+.
T Consensus 340 ~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~--------P~Da~lYsNRAac~~kL~ 406 (539)
T KOG0548|consen 340 AEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD--------PEDARLYSNRAACYLKLG 406 (539)
T ss_pred HHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--------CchhHHHHHHHHHHHHHh
Confidence 1 223467777777777888888999999999999976532 445555566655554433
No 165
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=2.1 Score=39.50 Aligned_cols=106 Identities=19% Similarity=0.234 Sum_probs=81.0
Q ss_pred HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhc---CCCCccHH-------HHHHHHHHHHHHccCHHHHHHHHHHHH
Q 012772 308 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLY---HPFSVNLM-------QTREKLIKILMELEDWKEALAYCQLTI 377 (456)
Q Consensus 308 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l---~p~h~~~~-------~~~~~L~~~~~~~g~~~~A~~~~~~~l 377 (456)
+..+-++...++.+|+|.+|...|+.++...+... -|..+... -++-|..+.+...|+|=++++++..+|
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 44555677778889999999999998876544321 23333332 334566677888899999999999888
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 378 PVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 378 ~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
. -||...-.||.=|+++...-+.+||..=|.++++.
T Consensus 258 ~--------~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 258 R--------HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred h--------cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 4 57777889999999999999999999999988874
No 166
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.53 E-value=0.39 Score=42.56 Aligned_cols=105 Identities=10% Similarity=0.096 Sum_probs=75.0
Q ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH
Q 012772 311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 390 (456)
Q Consensus 311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~ 390 (456)
+.+.+.-+...|+.++|++.|.++.... . ..-..+++.-+++.+.+..|+|.....+..++-...+. |++--.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~---~--~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~--~~d~~~ 111 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYC---T--SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK--GGDWER 111 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhc---C--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc--cchHHH
Confidence 3456666788899999999998876532 2 23346788889999999999999999999999888776 333222
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772 391 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 422 (456)
Q Consensus 391 ~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~ 422 (456)
....----|..++.+|+|.+|.+.|-.+...+
T Consensus 112 ~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 112 RNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 22222233555567899999888887775433
No 167
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.34 E-value=0.11 Score=31.66 Aligned_cols=29 Identities=17% Similarity=0.328 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 012772 351 QTREKLIKILMELEDWKEALAYCQLTIPV 379 (456)
Q Consensus 351 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~ 379 (456)
.++..++.++..+|+|++|++++++++.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56788999999999999999999999875
No 168
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.32 E-value=0.083 Score=50.35 Aligned_cols=87 Identities=15% Similarity=0.208 Sum_probs=47.0
Q ss_pred cCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 012772 321 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK 400 (456)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~ 400 (456)
-+++++|+++|+.+++ +||.|.. +...++.-|..-++-+-|+.||+++|. .|..+|. .+.++|.
T Consensus 303 m~~~~~a~~lYk~vlk-----~~~~nvE---aiAcia~~yfY~~~PE~AlryYRRiLq-----mG~~spe---Lf~NigL 366 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLK-----LHPINVE---AIACIAVGYFYDNNPEMALRYYRRILQ-----MGAQSPE---LFCNIGL 366 (478)
T ss_pred HHhHHHHHHHHHHHHh-----cCCccce---eeeeeeeccccCCChHHHHHHHHHHHH-----hcCCChH---HHhhHHH
Confidence 3455666666666553 3444432 233444555555556666666666553 3444444 2455666
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHH
Q 012772 401 LEWFLGDTENAIKSMTEAVEILR 423 (456)
Q Consensus 401 ~~~~~g~~~eA~~~l~~Al~i~~ 423 (456)
.++..++++-++..+++|+...+
T Consensus 367 CC~yaqQ~D~~L~sf~RAlstat 389 (478)
T KOG1129|consen 367 CCLYAQQIDLVLPSFQRALSTAT 389 (478)
T ss_pred HHHhhcchhhhHHHHHHHHhhcc
Confidence 66666666666666666665444
No 169
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=94.29 E-value=0.75 Score=49.95 Aligned_cols=122 Identities=16% Similarity=0.128 Sum_probs=94.5
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCC--ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 012772 312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFS--VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 389 (456)
Q Consensus 312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h--~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp 389 (456)
...|.-.+..|.+.+|...+++++........++. -.-+.+.++|+.++-.+++++.|.+.|+.++ ..||
T Consensus 456 NNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Il--------kehp 527 (1018)
T KOG2002|consen 456 NNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSIL--------KEHP 527 (1018)
T ss_pred HhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHH--------HHCc
Confidence 34455556778999999999999877543333333 1235568999999999999999999999988 4788
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Q 012772 390 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE 446 (456)
Q Consensus 390 ~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e 446 (456)
..-..+..||......++..+|...+.+++.+- ..+|....++..+....++
T Consensus 528 ~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-----~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 528 GYIDAYLRLGCMARDKNNLYEASLLLKDALNID-----SSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-----cCCcHHHHHHHHHHHhhhh
Confidence 888899999977778899999999999998864 4678888777776665543
No 170
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.29 E-value=0.74 Score=39.05 Aligned_cols=78 Identities=18% Similarity=0.176 Sum_probs=55.5
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC-CCC
Q 012772 310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-QFH 388 (456)
Q Consensus 310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g-~~h 388 (456)
.+...+..+...|++++|+..+++++.. .|.+ -.++..++.+|..+|+..+|++++++....+..-+| .-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~-----dP~~---E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps 135 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL-----DPYD---EEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPS 135 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH-----STT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 3344555567789999999998888753 3444 455678899999999999999999999999988888 555
Q ss_pred hHHHHHH
Q 012772 389 PLLGLQY 395 (456)
Q Consensus 389 p~~~~~l 395 (456)
|.+-..+
T Consensus 136 ~~~~~l~ 142 (146)
T PF03704_consen 136 PETRALY 142 (146)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
No 171
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.17 E-value=0.32 Score=46.52 Aligned_cols=77 Identities=22% Similarity=0.139 Sum_probs=65.1
Q ss_pred HHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHH--hcCCCCchHHHHH
Q 012772 361 MELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLG-DTENAIKSMTEAVEILRI--THGTNSPFMKELI 437 (456)
Q Consensus 361 ~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g-~~~eA~~~l~~Al~i~~~--~~G~~h~~~~~~~ 437 (456)
..+|+++.|..++.|+-.......|..--.++..+|+.|+-....+ ++++|...+++|.++++. ..+..|+...++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 4689999999999999887766666777889999999999999999 999999999999999876 2456777665544
No 172
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.13 E-value=0.096 Score=53.42 Aligned_cols=76 Identities=17% Similarity=0.072 Sum_probs=57.9
Q ss_pred CChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC-C--Ch-HHHHHHHH
Q 012772 322 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ-F--HP-LLGLQYYT 397 (456)
Q Consensus 322 g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~-~--hp-~~~~~l~~ 397 (456)
.+..+|++.|.+++.++ |..++++++||..|+.+|.|++|.+|+..+|.+.++-+.. . ++ ...+....
T Consensus 478 ~~s~EAIsAY~rALqLq--------P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR 549 (579)
T KOG1125|consen 478 NRSEEAISAYNRALQLQ--------PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLR 549 (579)
T ss_pred cccHHHHHHHHHHHhcC--------CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHH
Confidence 36789999999998764 3467899999999999999999999999999999886552 2 22 34455555
Q ss_pred HHHHHHHc
Q 012772 398 CGKLEWFL 405 (456)
Q Consensus 398 La~~~~~~ 405 (456)
++.+.+..
T Consensus 550 ~als~~~~ 557 (579)
T KOG1125|consen 550 LALSAMNR 557 (579)
T ss_pred HHHHHcCC
Confidence 55554433
No 173
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=93.96 E-value=0.07 Score=53.05 Aligned_cols=72 Identities=7% Similarity=0.130 Sum_probs=63.6
Q ss_pred HHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 012772 333 MIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF 404 (456)
Q Consensus 333 ~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~ 404 (456)
+++-+++++|||.|+++.....--+.+|.++|+++..+++-+-+|++.++.+.|-+|.++..+...|.+...
T Consensus 320 qaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~ 391 (615)
T KOG0508|consen 320 QALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSF 391 (615)
T ss_pred HHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHH
Confidence 355578899999999988777677788999999999999999999999999999999999999999887543
No 174
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=93.90 E-value=0.11 Score=51.76 Aligned_cols=78 Identities=15% Similarity=0.109 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHh
Q 012772 372 YCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY 449 (456)
Q Consensus 372 ~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~~~ 449 (456)
+-.++|-+.++++|+.||++.+....-|-+|..+|+++..+++...|+++.++.+.|-+|.|...+..-++.-.-+..
T Consensus 317 ~RmqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~mL~ 394 (615)
T KOG0508|consen 317 MRMQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSFMLQ 394 (615)
T ss_pred HHHHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHHhh
Confidence 345788899999999999999998888999999999999999999999999999999999999988888887665443
No 175
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=93.83 E-value=0.49 Score=49.83 Aligned_cols=120 Identities=13% Similarity=0.064 Sum_probs=84.7
Q ss_pred eeeccCCCcCCHHHHHHHHHHHHHHHHHHHhh-----hhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHH
Q 012772 287 FTCQQCGLVRSKEEIKKIASEVNILSKKTLAL-----TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILM 361 (456)
Q Consensus 287 ~~C~~C~~~~~~~~~~~~~~~~~~l~~~a~~~-----~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~ 361 (456)
|-|---.-..++...+++.+-....+..|..+ .++++|+++.+.+++.+++ ++....++..++.+..
T Consensus 459 lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~--------nplq~~~wf~~G~~AL 530 (777)
T KOG1128|consen 459 LYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEI--------NPLQLGTWFGLGCAAL 530 (777)
T ss_pred hHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhc--------CccchhHHHhccHHHH
Confidence 44443333445555555544333444444443 4668899998888877754 5567788899999999
Q ss_pred HccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772 362 ELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 422 (456)
Q Consensus 362 ~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~ 422 (456)
+.+++..|.+.+.+.+. --|..+-..+||+.+|...|+-.+|...+++|+..-
T Consensus 531 qlek~q~av~aF~rcvt--------L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 531 QLEKEQAAVKAFHRCVT--------LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHhhhHHHHHHHHHHhh--------cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 99999999999887653 345557789999999998888888888887777643
No 176
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=93.83 E-value=0.52 Score=47.26 Aligned_cols=83 Identities=17% Similarity=0.182 Sum_probs=63.7
Q ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 012772 318 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 397 (456)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~ 397 (456)
+...++-.+|+++.++++.. .|.+ ..++...+..+...++++.|++.++++.. ..|.--..++.
T Consensus 210 ~l~~~~E~~AI~ll~~aL~~-----~p~d---~~LL~~Qa~fLl~k~~~~lAL~iAk~av~--------lsP~~f~~W~~ 273 (395)
T PF09295_consen 210 YLLMNEEVEAIRLLNEALKE-----NPQD---SELLNLQAEFLLSKKKYELALEIAKKAVE--------LSPSEFETWYQ 273 (395)
T ss_pred HHhcCcHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------hCchhHHHHHH
Confidence 33445566777766666521 2333 66677788899999999999999999885 46777888999
Q ss_pred HHHHHHHcCCHHHHHHHHH
Q 012772 398 CGKLEWFLGDTENAIKSMT 416 (456)
Q Consensus 398 La~~~~~~g~~~eA~~~l~ 416 (456)
||++|..+|++++|+-.+.
T Consensus 274 La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 274 LAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHhcCCHHHHHHHHh
Confidence 9999999999999987665
No 177
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.62 E-value=0.19 Score=30.75 Aligned_cols=30 Identities=30% Similarity=0.424 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 012772 351 QTREKLIKILMELEDWKEALAYCQLTIPVY 380 (456)
Q Consensus 351 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~ 380 (456)
+++..++.+|..+|++++|..++++++++-
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 567889999999999999999999999864
No 178
>PRK15331 chaperone protein SicA; Provisional
Probab=93.62 E-value=0.67 Score=40.14 Aligned_cols=77 Identities=10% Similarity=0.075 Sum_probs=62.2
Q ss_pred CCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012772 344 PFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 423 (456)
Q Consensus 344 p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~ 423 (456)
--...++...+..|.-+..+|++++|..+++-+. .|.+..+.. ++.||-++..++++++|+..|..|..+-.
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~-----~~d~~n~~Y---~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~ 102 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLC-----IYDFYNPDY---TMGLAAVCQLKKQFQKACDLYAVAFTLLK 102 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----HhCcCcHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3455677888888888999999999999988654 355666553 79999999999999999999999988776
Q ss_pred HhcCC
Q 012772 424 ITHGT 428 (456)
Q Consensus 424 ~~~G~ 428 (456)
..++|
T Consensus 103 ~dp~p 107 (165)
T PRK15331 103 NDYRP 107 (165)
T ss_pred CCCCc
Confidence 55554
No 179
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=93.60 E-value=0.97 Score=41.91 Aligned_cols=62 Identities=16% Similarity=0.093 Sum_probs=52.2
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012772 354 EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 423 (456)
Q Consensus 354 ~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~ 423 (456)
..++...+..|+|.+|+...+++.. -.|.=+..++-+|-+|.+.|++++|..-|.+|+++.-
T Consensus 104 ~~~gk~~~~~g~~~~A~~~~rkA~~--------l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~ 165 (257)
T COG5010 104 AAQGKNQIRNGNFGEAVSVLRKAAR--------LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP 165 (257)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHhc--------cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc
Confidence 3478888999999999999998874 2344466788999999999999999999999998753
No 180
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.57 E-value=0.15 Score=33.58 Aligned_cols=36 Identities=14% Similarity=0.237 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHH
Q 012772 394 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK 434 (456)
Q Consensus 394 ~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~ 434 (456)
.++.||.+|..+|++++|++.|+++++. .|+++...
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~-----~P~~~~a~ 38 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL-----DPDDPEAW 38 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCCHHHH
Confidence 5788999999999999999999999983 45665443
No 181
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.52 E-value=0.21 Score=31.93 Aligned_cols=37 Identities=22% Similarity=0.151 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 012772 393 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN 429 (456)
Q Consensus 393 ~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~ 429 (456)
..+..||.+....++|++|..=|++|++|.+..+.++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 4678899999999999999999999999999987653
No 182
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=93.46 E-value=0.5 Score=52.02 Aligned_cols=64 Identities=13% Similarity=-0.069 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012772 352 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 424 (456)
Q Consensus 352 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~ 424 (456)
++..||.+|-.+|++++|...++++|..- |.=+..++++|-.|... ++++|+.++.+|+..+-.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--------~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD--------RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh
Confidence 67788888888888888888888887542 55566788888888888 888888888888877553
No 183
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=93.45 E-value=1.6 Score=42.27 Aligned_cols=114 Identities=16% Similarity=0.121 Sum_probs=83.3
Q ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH
Q 012772 311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 390 (456)
Q Consensus 311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~ 390 (456)
-.+....+...|++.+|+..|..+++. +|....++..-+.+|..+|+-.-|+.-..++|.+ -|+
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--------KpD 104 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--------KPD 104 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--------Ccc
Confidence 344455566678889999988887642 4555667788899999999988888888888753 456
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 012772 391 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA 445 (456)
Q Consensus 391 ~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~ 445 (456)
....-.+=|.+++.+|++++|+.=+.+.+. +.|+.-...+...+|+-+..
T Consensus 105 F~~ARiQRg~vllK~Gele~A~~DF~~vl~-----~~~s~~~~~eaqskl~~~~e 154 (504)
T KOG0624|consen 105 FMAARIQRGVVLLKQGELEQAEADFDQVLQ-----HEPSNGLVLEAQSKLALIQE 154 (504)
T ss_pred HHHHHHHhchhhhhcccHHHHHHHHHHHHh-----cCCCcchhHHHHHHHHhHHH
Confidence 666667778899999999999988887764 44444566666666665543
No 184
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.43 E-value=0.88 Score=44.22 Aligned_cols=101 Identities=12% Similarity=0.072 Sum_probs=76.5
Q ss_pred ChHHHHHHHHHHHHHHHhh-cCCCC-ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 012772 323 NHQEVVSTYKMIEKLQKKL-YHPFS-VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK 400 (456)
Q Consensus 323 ~~~~a~~~~~~~~~~~~~~-l~p~h-~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~ 400 (456)
++++|+-...++.++-... ++.-| .+..-+++.++.++..+|++..|.++|+++..+. +-.++-+..+..+.-+|.
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla--l~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA--LQHGDRALQARCLLCFAD 254 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH--HHhCChHHHHHHHHHHHH
Confidence 4455555555555554332 22222 3345567789999999999999999999987753 334888999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHh
Q 012772 401 LEWFLGDTENAIKSMTEAVEILRIT 425 (456)
Q Consensus 401 ~~~~~g~~~eA~~~l~~Al~i~~~~ 425 (456)
+|.+.|+.+.|-.-|++|+.+..-.
T Consensus 255 IyR~~gd~e~af~rYe~Am~~m~~~ 279 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAMGTMASL 279 (518)
T ss_pred HHHhcccHhHHHHHHHHHHHHHhhh
Confidence 9999999999999999999988753
No 185
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.30 E-value=5.6 Score=37.83 Aligned_cols=123 Identities=17% Similarity=0.162 Sum_probs=79.8
Q ss_pred HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHH-------------
Q 012772 309 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQL------------- 375 (456)
Q Consensus 309 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~------------- 375 (456)
+..+.++..+.+.|++.+|..+++.++... |.+ ..+.-.|+..|...|+.+.|...+..
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-----~~~---~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l 206 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAA-----PEN---SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGL 206 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhC-----ccc---chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHH
Confidence 334556666778899999999888876532 233 56667788899999888776655432
Q ss_pred --HHHHHHHhc--C---------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-----------------
Q 012772 376 --TIPVYQRVY--P---------QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT----------------- 425 (456)
Q Consensus 376 --~l~~~e~~~--g---------~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~----------------- 425 (456)
-++..++.- | ...|.-...-+.||+.+...|++++|.+.|- .|+.+.
T Consensus 207 ~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll---~~l~~d~~~~d~~~Rk~lle~f~ 283 (304)
T COG3118 207 QAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLL---ALLRRDRGFEDGEARKTLLELFE 283 (304)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH---HHHHhcccccCcHHHHHHHHHHH
Confidence 133333221 1 1245555667889999999999999987764 333332
Q ss_pred -cCCCCchHHHHHHHHHH
Q 012772 426 -HGTNSPFMKELILKLEE 442 (456)
Q Consensus 426 -~G~~h~~~~~~~~~l~~ 442 (456)
+|+.||.+.....+|..
T Consensus 284 ~~g~~Dp~~~~~RRkL~s 301 (304)
T COG3118 284 AFGPADPLVLAYRRKLYS 301 (304)
T ss_pred hcCCCCHHHHHHHHHHHH
Confidence 67777766665555543
No 186
>PRK14574 hmsH outer membrane protein; Provisional
Probab=93.22 E-value=1.8 Score=47.82 Aligned_cols=98 Identities=9% Similarity=0.017 Sum_probs=72.6
Q ss_pred HhhhhcCChHHHHHHHHHHHHHHH---hhc----CCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772 316 LALTSCGNHQEVVSTYKMIEKLQK---KLY----HPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 388 (456)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~~---~~l----~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~h 388 (456)
-.+.+++++++|..+.+++..-.- ..+ ...|+...+....++..+...|++.+|.+..++++. .-
T Consensus 375 yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--------~a 446 (822)
T PRK14574 375 YSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--------TA 446 (822)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hC
Confidence 346688999999998888865211 112 256788889999999999999999999999988763 22
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 389 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 389 p~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
|.-......+|.++...|+..+|+..+++|+.+
T Consensus 447 P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 447 PANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 333445567788888888888888888666554
No 187
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=93.18 E-value=2.1 Score=41.21 Aligned_cols=101 Identities=15% Similarity=0.142 Sum_probs=69.5
Q ss_pred ChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 012772 323 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE 402 (456)
Q Consensus 323 ~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~ 402 (456)
++++|..+|+.+.. .+++ ...+++.++.+.+.+|+|++|.+..++++.. .+.+ ...+.+++.+.
T Consensus 182 ~~~~A~y~f~El~~----~~~~----t~~~lng~A~~~l~~~~~~eAe~~L~~al~~-----~~~~---~d~LaNliv~~ 245 (290)
T PF04733_consen 182 KYQDAFYIFEELSD----KFGS----TPKLLNGLAVCHLQLGHYEEAEELLEEALEK-----DPND---PDTLANLIVCS 245 (290)
T ss_dssp CCCHHHHHHHHHHC----CS------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC------CCH---HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh----ccCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----ccCC---HHHHHHHHHHH
Confidence 68888888877532 2332 3566788999999999999999998887531 1334 45788999999
Q ss_pred HHcCCH-HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 012772 403 WFLGDT-ENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 444 (456)
Q Consensus 403 ~~~g~~-~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~ 444 (456)
..+|+. +++.+++.+... .-|+||.+.++..+-+...
T Consensus 246 ~~~gk~~~~~~~~l~qL~~-----~~p~h~~~~~~~~~~~~FD 283 (290)
T PF04733_consen 246 LHLGKPTEAAERYLSQLKQ-----SNPNHPLVKDLAEKEAEFD 283 (290)
T ss_dssp HHTT-TCHHHHHHHHHCHH-----HTTTSHHHHHHHHHHHHHH
T ss_pred HHhCCChhHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHH
Confidence 999998 456656655332 3679999998776644443
No 188
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.10 E-value=0.17 Score=33.31 Aligned_cols=28 Identities=14% Similarity=0.039 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 012772 351 QTREKLIKILMELEDWKEALAYCQLTIP 378 (456)
Q Consensus 351 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~ 378 (456)
.++..++.+|..+|++++|++.+++++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567899999999999999999999986
No 189
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=93.06 E-value=2 Score=43.34 Aligned_cols=108 Identities=17% Similarity=0.069 Sum_probs=72.1
Q ss_pred hhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q 012772 317 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY 396 (456)
Q Consensus 317 ~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~ 396 (456)
.+...++..+|++.+++++.. -|+. .-...+++++|.+.|+..+|+.+..+.+. ..|.-...+.
T Consensus 349 i~~~~nk~~~A~e~~~kal~l-----~P~~---~~l~~~~a~all~~g~~~eai~~L~~~~~--------~~p~dp~~w~ 412 (484)
T COG4783 349 ILLEANKAKEAIERLKKALAL-----DPNS---PLLQLNLAQALLKGGKPQEAIRILNRYLF--------NDPEDPNGWD 412 (484)
T ss_pred HHHHcCChHHHHHHHHHHHhc-----CCCc---cHHHHHHHHHHHhcCChHHHHHHHHHHhh--------cCCCCchHHH
Confidence 356778999999999888753 3555 23346899999999999999998777652 4444455666
Q ss_pred HHHHHHHHcCC-----------------HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 012772 397 TCGKLEWFLGD-----------------TENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 444 (456)
Q Consensus 397 ~La~~~~~~g~-----------------~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~ 444 (456)
-||+.|..+|+ +++|...+.+|.+- .|.+.|.....--.+.+.+
T Consensus 413 ~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~----~~~~~~~~aR~dari~~~~ 473 (484)
T COG4783 413 LLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQ----VKLGFPDWARADARIDQLR 473 (484)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh----ccCCcHHHHHHHHHHHHHH
Confidence 67776666555 44555444444433 5567777776665555554
No 190
>PLN03218 maturation of RBCL 1; Provisional
Probab=93.04 E-value=1.2 Score=50.56 Aligned_cols=90 Identities=11% Similarity=-0.023 Sum_probs=45.4
Q ss_pred HhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q 012772 316 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQY 395 (456)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l 395 (456)
..+...|++++|+++|+..... -+.|+ ..+++.|+..|.+.|++++|.+++.++...- . +.-|. ..++
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~---Gv~PD----~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~---~-gi~PD-~vTy 582 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSK---NVKPD----RVVFNALISACGQSGAVDRAFDVLAEMKAET---H-PIDPD-HITV 582 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc---C-CCCCc-HHHH
Confidence 3455667777777777665431 12232 3445566666666666666666665554310 0 11111 2334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH
Q 012772 396 YTCGKLEWFLGDTENAIKSMTE 417 (456)
Q Consensus 396 ~~La~~~~~~g~~~eA~~~l~~ 417 (456)
+.|-..|...|++++|.+++++
T Consensus 583 naLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 583 GALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHH
Confidence 4444445555555555555443
No 191
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=93.03 E-value=0.038 Score=33.27 Aligned_cols=28 Identities=29% Similarity=0.736 Sum_probs=20.6
Q ss_pred ccCcCcCCCCCCccCcCCCCcccccHHhhh
Q 012772 28 SRCDGCFASSNLKKCSACQVVWYCGSNCQK 57 (456)
Q Consensus 28 ~~C~~C~~~~~~~~C~~C~~v~yCs~~C~~ 57 (456)
..|.-|.. ...+.|++|+. +|||-+|.+
T Consensus 3 ~~C~vC~~-~~kY~Cp~C~~-~~CSl~C~k 30 (30)
T PF04438_consen 3 KLCSVCGN-PAKYRCPRCGA-RYCSLACYK 30 (30)
T ss_dssp EEETSSSS-EESEE-TTT---EESSHHHHH
T ss_pred CCCccCcC-CCEEECCCcCC-ceeCcEeEC
Confidence 46788887 67899999999 699999963
No 192
>PLN03218 maturation of RBCL 1; Provisional
Probab=93.02 E-value=1.8 Score=49.18 Aligned_cols=53 Identities=15% Similarity=0.170 Sum_probs=26.5
Q ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 012772 318 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTI 377 (456)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l 377 (456)
+...|++++|.++++.+.+. -+ .....+++.++..|.+.|++++|.+++.++.
T Consensus 589 y~k~G~ldeA~elf~~M~e~---gi----~p~~~tynsLI~ay~k~G~~deAl~lf~eM~ 641 (1060)
T PLN03218 589 CANAGQVDRAKEVYQMIHEY---NI----KGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHc---CC----CCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34556666666655554321 11 1122344555555666666666665555443
No 193
>PLN03077 Protein ECB2; Provisional
Probab=93.01 E-value=1.9 Score=48.18 Aligned_cols=127 Identities=15% Similarity=0.125 Sum_probs=78.7
Q ss_pred hhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHH-----HHHHHHhcC------
Q 012772 317 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLT-----IPVYQRVYP------ 385 (456)
Q Consensus 317 ~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~-----l~~~e~~~g------ 385 (456)
.+...|.+++|.++++...+.. -..| -...+..+..++.+.|++++|.++.+++ ..+|..+++
T Consensus 598 a~~~~g~v~ea~~~f~~M~~~~--gi~P----~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~ 671 (857)
T PLN03077 598 ACSRSGMVTQGLEYFHSMEEKY--SITP----NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHR 671 (857)
T ss_pred HHhhcChHHHHHHHHHHHHHHh--CCCC----chHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Confidence 3445677777777776664321 1122 1355667777777777777777776654 011111110
Q ss_pred -------------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHhc-----------------CCCCchHH
Q 012772 386 -------------QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI-LRITH-----------------GTNSPFMK 434 (456)
Q Consensus 386 -------------~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i-~~~~~-----------------G~~h~~~~ 434 (456)
.-.|.-+..+..|+.+|...|++++|.++.+.-.+- +++.. ...||.+.
T Consensus 672 ~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~ 751 (857)
T PLN03077 672 HVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIK 751 (857)
T ss_pred ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchH
Confidence 112333445667788999999999999887765542 11111 24699999
Q ss_pred HHHHHHHHHHHHHHh
Q 012772 435 ELILKLEEAQAEASY 449 (456)
Q Consensus 435 ~~~~~l~~~~~e~~~ 449 (456)
++...|.++..++..
T Consensus 752 ~i~~~l~~l~~~~~~ 766 (857)
T PLN03077 752 EINTVLEGFYEKMKA 766 (857)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998887764
No 194
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=92.97 E-value=3.6 Score=38.34 Aligned_cols=57 Identities=12% Similarity=0.060 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Q 012772 366 WKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEAVEIL 422 (456)
Q Consensus 366 ~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~-~g~~~eA~~~l~~Al~i~ 422 (456)
.+.|.+.|++++.+.+.-+|+.||.+.....+.+..|.. +++.++|..+.++|.+--
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 457899999999998888999999999999999888776 588888887766655543
No 195
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=92.87 E-value=0.039 Score=45.37 Aligned_cols=40 Identities=33% Similarity=0.780 Sum_probs=33.2
Q ss_pred CccCcCcCCCCCCccCcCCCCcccccHHhhhhcHHHhHH--hchhhH
Q 012772 27 ISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRL--ECQVLS 71 (456)
Q Consensus 27 ~~~C~~C~~~~~~~~C~~C~~v~yCs~~C~~~~~~~H~~--EC~~l~ 71 (456)
.+.|.-|.+....++|+.|.+ +|||-.|. +.|+. +|+...
T Consensus 5 t~tC~ic~e~~~KYKCpkC~v-PYCSl~Cf----KiHk~tPq~~~ve 46 (157)
T KOG2857|consen 5 TTTCVICLESEIKYKCPKCSV-PYCSLPCF----KIHKSTPQCETVE 46 (157)
T ss_pred eeeehhhhcchhhccCCCCCC-ccccchhh----hhccCCccccccC
Confidence 467999999877899999999 69999996 68887 886553
No 196
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=92.76 E-value=4.2 Score=37.84 Aligned_cols=82 Identities=20% Similarity=0.153 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Q 012772 366 WKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEAVEILRITHGT-NSPFMKELILKLEEA 443 (456)
Q Consensus 366 ~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~-~g~~~eA~~~l~~Al~i~~~~~G~-~h~~~~~~~~~l~~~ 443 (456)
.++|.+.|++++.+.+..+|+.||.......+.+..+.. +|+.++|..+.++|.+-.....+. +--...+....|..+
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l~e~~~~d~~~ilqlL 221 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTLSEESYKDSTLILQLL 221 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGSHTTTHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHH
Confidence 368999999999999999999999999999999888765 799999999988888766544431 112244444455555
Q ss_pred HHHH
Q 012772 444 QAEA 447 (456)
Q Consensus 444 ~~e~ 447 (456)
+..+
T Consensus 222 rdNl 225 (236)
T PF00244_consen 222 RDNL 225 (236)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 197
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.61 E-value=0.95 Score=45.90 Aligned_cols=89 Identities=10% Similarity=-0.050 Sum_probs=65.2
Q ss_pred ChHHHHHHHHHHHHHHHhhcCCCC-----------------ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 012772 323 NHQEVVSTYKMIEKLQKKLYHPFS-----------------VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP 385 (456)
Q Consensus 323 ~~~~a~~~~~~~~~~~~~~l~p~h-----------------~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g 385 (456)
...+|+++++++++..+..++... .....++..|+....++|+.++|+++++.++.. +|
T Consensus 215 Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke----~p 290 (539)
T PF04184_consen 215 TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKE----FP 290 (539)
T ss_pred CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhh----CC
Confidence 356778888887776554444321 124677888999999999999999999988742 33
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 012772 386 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTE 417 (456)
Q Consensus 386 ~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~ 417 (456)
. -+......+|-..++.++.|.++..++.|
T Consensus 291 ~--~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 291 N--LDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred c--cchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 2 12445778888888999999988888776
No 198
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.36 E-value=2.8 Score=38.48 Aligned_cols=95 Identities=13% Similarity=0.134 Sum_probs=53.9
Q ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHHHhcCCCChHHHH-HHHH
Q 012772 320 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME-LEDWKEALAYCQLTIPVYQRVYPQFHPLLGL-QYYT 397 (456)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~-~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~-~l~~ 397 (456)
..++.++|+..++++++++... |.... -++-...|+.+|-. +.++++|+.+|+++-+-|. |......+. -+.+
T Consensus 85 kk~~~~eAv~cL~~aieIyt~~-Grf~~-aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk---~ees~ssANKC~lK 159 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAIEIYTDM-GRFTM-AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYK---GEESVSSANKCLLK 159 (288)
T ss_pred hccChHHHHHHHHHHHHHHHhh-hHHHH-HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHc---chhhhhhHHHHHHH
Confidence 3456666666666666655321 11100 11222345555543 3677777777777655433 344444444 5666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 012772 398 CGKLEWFLGDTENAIKSMTEAV 419 (456)
Q Consensus 398 La~~~~~~g~~~eA~~~l~~Al 419 (456)
.|.....+|+|.+|++.|++..
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva 181 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVA 181 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777888888888887644
No 199
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=92.33 E-value=2.6 Score=33.91 Aligned_cols=102 Identities=11% Similarity=0.072 Sum_probs=61.8
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHH----HccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 012772 314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILM----ELEDWKEALAYCQLTIPVYQRVYPQFHP 389 (456)
Q Consensus 314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~----~~g~~~~A~~~~~~~l~~~e~~~g~~hp 389 (456)
.|..+...|++-+|+++.+.+.... .++....-.....+.++. ...+-+-...|..-+++.+.+-. .-+|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h-----~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~-~Lsp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRH-----GEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAV-ELSP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHc-----cCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHh-ccCh
Confidence 3556678899999999988876542 333321122233344433 34566667778888887776533 4556
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 390 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 390 ~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
.-|..+++||+-+--.--|+++...-++++.|
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 66999999998543333455555555555443
No 200
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.31 E-value=0.96 Score=44.70 Aligned_cols=96 Identities=13% Similarity=0.123 Sum_probs=71.8
Q ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCccHH---------HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 012772 319 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLM---------QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 389 (456)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~---------~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp 389 (456)
+..++.+.|+..+++.+. ++|.|...- .....-++-..+.|.+..|.+.|..+|.+ -|..--
T Consensus 214 yy~~~~~ka~~hf~qal~-----ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i----dP~n~~ 284 (486)
T KOG0550|consen 214 YYNDNADKAINHFQQALR-----LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI----DPSNKK 284 (486)
T ss_pred ccccchHHHHHHHhhhhc-----cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC----Cccccc
Confidence 445567777777777764 567775443 33344455566789999999999999874 555556
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012772 390 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 423 (456)
Q Consensus 390 ~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~ 423 (456)
..+..|.+.|.+...+|+..+|+.--.+|+.|=.
T Consensus 285 ~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~ 318 (486)
T KOG0550|consen 285 TNAKLYGNRALVNIRLGRLREAISDCNEALKIDS 318 (486)
T ss_pred hhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH
Confidence 6778899999999999999999988888877633
No 201
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=92.24 E-value=0.91 Score=50.06 Aligned_cols=103 Identities=10% Similarity=-0.070 Sum_probs=68.9
Q ss_pred HhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH---------hcC-
Q 012772 316 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR---------VYP- 385 (456)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~---------~~g- 385 (456)
..+..++++++|+.+++..++ .+|..+..+..+|.++...+++.+|... .++.+... ++.
T Consensus 39 ~~~~~~~~~deai~i~~~~l~--------~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~ 108 (906)
T PRK14720 39 DAYKSENLTDEAKDICEEHLK--------EHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDK 108 (906)
T ss_pred HHHHhcCCHHHHHHHHHHHHH--------hCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHH
Confidence 344567899999988775543 2444455566677788777776666555 33332211 000
Q ss_pred -CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchH
Q 012772 386 -QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM 433 (456)
Q Consensus 386 -~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~ 433 (456)
.+++.--..++.||..|-.+|+.++|...|++++++- ++++.+
T Consensus 109 i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-----~~n~~a 152 (906)
T PRK14720 109 ILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-----RDNPEI 152 (906)
T ss_pred HHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----cccHHH
Confidence 1244444689999999999999999999999999875 555544
No 202
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.20 E-value=0.23 Score=29.96 Aligned_cols=28 Identities=21% Similarity=0.371 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 394 QYYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 394 ~l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
.++++|.++..+|++++|.+.|++.++-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5789999999999999999999988763
No 203
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=92.13 E-value=1.5 Score=43.97 Aligned_cols=100 Identities=14% Similarity=0.088 Sum_probs=73.3
Q ss_pred cCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 012772 321 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK 400 (456)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~ 400 (456)
.+++++|+++++++.+. ++. +...|+.++..+++-.+|+++..+++ ...|.-+..|...|.
T Consensus 182 t~~~~~ai~lle~L~~~--------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL--------~~~p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRER--------DPE---VAVLLARVYLLMNEEVEAIRLLNEAL--------KENPQDSELLNLQAE 242 (395)
T ss_pred cccHHHHHHHHHHHHhc--------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHH--------HhCCCCHHHHHHHHH
Confidence 46889999888876532 222 23458888888899899999998888 234444888889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 012772 401 LEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA 447 (456)
Q Consensus 401 ~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~ 447 (456)
.+...++++.|++..++|.++. |.-.+.-..|+++...+
T Consensus 243 fLl~k~~~~lAL~iAk~av~ls--------P~~f~~W~~La~~Yi~~ 281 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVELS--------PSEFETWYQLAECYIQL 281 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHhC--------chhHHHHHHHHHHHHhc
Confidence 9999999999999999998864 44444445555554433
No 204
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.10 E-value=1.7 Score=40.03 Aligned_cols=101 Identities=12% Similarity=0.047 Sum_probs=66.9
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772 313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 392 (456)
Q Consensus 313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~ 392 (456)
++|.+..+..++++|+.+|++.+++.+. +....--...+...+.++.+...|.+|.....+...++...---..+-.+
T Consensus 115 eKAak~lenv~Pd~AlqlYqralavve~--~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~ 192 (308)
T KOG1585|consen 115 EKAAKALENVKPDDALQLYQRALAVVEE--DDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKA 192 (308)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHH
Confidence 3444455667899999999999887542 12223345566778889999999999999999888887776544444222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 012772 393 LQYYTCGKLEWFLGDTENAIKSMTE 417 (456)
Q Consensus 393 ~~l~~La~~~~~~g~~~eA~~~l~~ 417 (456)
+..+-.+|+...+|..|++.++.
T Consensus 193 --~va~ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 193 --YVAAILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred --HHHHHHHHhhHHHHHHHHHHhcc
Confidence 22222334445577777777665
No 205
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.04 E-value=9.8 Score=35.03 Aligned_cols=120 Identities=17% Similarity=0.106 Sum_probs=62.9
Q ss_pred ChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 012772 323 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE 402 (456)
Q Consensus 323 ~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~ 402 (456)
+|+.|=..|.++-....+ .+ +-.+.+.++-..+..|.+. +-++|....+++++||... +.-..-+.+...+|.+|
T Consensus 49 ~w~~AG~aflkaA~~h~k-~~-skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~--Grf~~aAk~~~~iaEiy 123 (288)
T KOG1586|consen 49 NWSAAGDAFLKAADLHLK-AG-SKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDM--GRFTMAAKHHIEIAEIY 123 (288)
T ss_pred hHHHHHHHHHHHHHHHHh-cC-CchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhh--hHHHHHHhhhhhHHHHH
Confidence 444554444444443322 12 2233444444444444443 7777777777777776542 22334455666677776
Q ss_pred HH-cCCHHHHHHHHHHHHHHHHHhcCCCCchHH-HHHHHHHHHHHHHHhh
Q 012772 403 WF-LGDTENAIKSMTEAVEILRITHGTNSPFMK-ELILKLEEAQAEASYK 450 (456)
Q Consensus 403 ~~-~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~-~~~~~l~~~~~e~~~~ 450 (456)
-. +-++++|+.+|++|-+-+... +..... .-+.+.++..+.++.+
T Consensus 124 Esdl~d~ekaI~~YE~Aae~yk~e---es~ssANKC~lKvA~yaa~leqY 170 (288)
T KOG1586|consen 124 ESDLQDFEKAIAHYEQAAEYYKGE---ESVSSANKCLLKVAQYAAQLEQY 170 (288)
T ss_pred hhhHHHHHHHHHHHHHHHHHHcch---hhhhhHHHHHHHHHHHHHHHHHH
Confidence 54 367777888887777766543 332222 2334444444444443
No 206
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=92.04 E-value=0.86 Score=48.73 Aligned_cols=79 Identities=20% Similarity=0.231 Sum_probs=59.3
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 012772 314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 393 (456)
Q Consensus 314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~ 393 (456)
-|.-..+-|..++|+.+|+++.+. +-|-.+|..+|.|.+|.+..+. .+-..+-.
T Consensus 806 vAvLAieLgMlEeA~~lYr~ckR~----------------DLlNKlyQs~g~w~eA~eiAE~----------~DRiHLr~ 859 (1416)
T KOG3617|consen 806 VAVLAIELGMLEEALILYRQCKRY----------------DLLNKLYQSQGMWSEAFEIAET----------KDRIHLRN 859 (1416)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH----------------HHHHHHHHhcccHHHHHHHHhh----------ccceehhh
Confidence 344455668888888888887531 2334567789999999988653 34455677
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 012772 394 QYYTCGKLEWFLGDTENAIKSMTEA 418 (456)
Q Consensus 394 ~l~~La~~~~~~g~~~eA~~~l~~A 418 (456)
++++.|+-+-..++.+.|+++|+|+
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhc
Confidence 8999999998999999999999974
No 207
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.80 E-value=6 Score=34.88 Aligned_cols=103 Identities=16% Similarity=0.131 Sum_probs=60.9
Q ss_pred cHHHHHHHHHHHHHHccCH---HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHH
Q 012772 348 NLMQTREKLIKILMELEDW---KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLG----DTENAIKSMTEAVE 420 (456)
Q Consensus 348 ~~~~~~~~L~~~~~~~g~~---~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g----~~~eA~~~l~~Al~ 420 (456)
.-.+.+++=+.++.++.++ .++.++++.++.-++..+ .-+|.....++.||.++..+| +..+|..+|++|.+
T Consensus 23 ~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL-~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~ 101 (186)
T PF06552_consen 23 LDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEAL-KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATE 101 (186)
T ss_dssp T-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH-HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence 3355566666666655433 456666666665554433 245667778888988887764 45688899999998
Q ss_pred HHHHh--cCCCCchHHHHHHH---HHHHHHHHHhhh
Q 012772 421 ILRIT--HGTNSPFMKELILK---LEEAQAEASYKL 451 (456)
Q Consensus 421 i~~~~--~G~~h~~~~~~~~~---l~~~~~e~~~~~ 451 (456)
-+++. .-|+...+...+.+ --+++.|++.+.
T Consensus 102 ~FqkAv~~~P~ne~Y~ksLe~~~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 102 YFQKAVDEDPNNELYRKSLEMAAKAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHH-TT-HHHHHHHHHHHTHHHHHHHHHHSS
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 88865 44555555544433 334466776643
No 208
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.75 E-value=2.1 Score=40.01 Aligned_cols=68 Identities=16% Similarity=0.208 Sum_probs=47.9
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------HHHHhcCCCCchHHHHHHHHH
Q 012772 375 LTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE-------------ILRITHGTNSPFMKELILKLE 441 (456)
Q Consensus 375 ~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~-------------i~~~~~G~~h~~~~~~~~~l~ 441 (456)
.+.-+|+..-+.. |.+-..++.+|.+++.+|+++||+..++.|+. ++....|++.+.+...+..|.
T Consensus 191 dAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 191 DAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred hHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 3344455444433 34467788899999999999999999999986 334457888777776666665
Q ss_pred HH
Q 012772 442 EA 443 (456)
Q Consensus 442 ~~ 443 (456)
..
T Consensus 270 ~~ 271 (299)
T KOG3081|consen 270 LS 271 (299)
T ss_pred hc
Confidence 54
No 209
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=91.46 E-value=1.1 Score=41.07 Aligned_cols=68 Identities=18% Similarity=0.083 Sum_probs=58.8
Q ss_pred ccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 012772 363 LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP 431 (456)
Q Consensus 363 ~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~ 431 (456)
.-.+++|++.+.-+|-.++ +.+..+-.+|..+..+|=+|-.+|+.++...++++|++.++..+-.+..
T Consensus 90 ~Rt~~~ai~~YkLAll~~~-~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~ 157 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQ-IKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDF 157 (214)
T ss_pred CCCHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 3578899999998888766 5667777999999999999999999999999999999999998866653
No 210
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=91.38 E-value=5 Score=38.15 Aligned_cols=116 Identities=13% Similarity=0.017 Sum_probs=78.5
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHHHHHhcCCCChH
Q 012772 314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL---EDWKEALAYCQLTIPVYQRVYPQFHPL 390 (456)
Q Consensus 314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~---g~~~~A~~~~~~~l~~~e~~~g~~hp~ 390 (456)
.+..+..+|++..|...|.++.++ -|+|+.+. ..++.++..+ .+-.++..+.++++. .+|-+
T Consensus 162 Lg~~ym~~~~~~~A~~AY~~A~rL-----~g~n~~~~---~g~aeaL~~~a~~~~ta~a~~ll~~al~-------~D~~~ 226 (287)
T COG4235 162 LGRAYMALGRASDALLAYRNALRL-----AGDNPEIL---LGLAEALYYQAGQQMTAKARALLRQALA-------LDPAN 226 (287)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHh-----CCCCHHHH---HHHHHHHHHhcCCcccHHHHHHHHHHHh-------cCCcc
Confidence 344567789999999999999754 35565544 3455554433 355677777777764 23333
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHh
Q 012772 391 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY 449 (456)
Q Consensus 391 ~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~~~ 449 (456)
...++-||..++.+|+|.+|...++.-++ ..-++.|-..-+...++........
T Consensus 227 -iral~lLA~~afe~g~~~~A~~~Wq~lL~----~lp~~~~rr~~ie~~ia~~~~~~~~ 280 (287)
T COG4235 227 -IRALSLLAFAAFEQGDYAEAAAAWQMLLD----LLPADDPRRSLIERSIARALAQRSA 280 (287)
T ss_pred -HHHHHHHHHHHHHcccHHHHHHHHHHHHh----cCCCCCchHHHHHHHHHHHHhcccc
Confidence 46778899999999999999977766555 4455677666666666666554443
No 211
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.23 E-value=0.59 Score=44.77 Aligned_cols=96 Identities=15% Similarity=0.031 Sum_probs=53.6
Q ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-------hc------
Q 012772 318 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR-------VY------ 384 (456)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~-------~~------ 384 (456)
+.-.++.+-|+..|++++.+ |..++.+ ..+++-.+...|+++-++..+++++...+. .|
T Consensus 334 yfY~~~PE~AlryYRRiLqm-----G~~speL---f~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~va 405 (478)
T KOG1129|consen 334 YFYDNNPEMALRYYRRILQM-----GAQSPEL---FCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVA 405 (478)
T ss_pred cccCCChHHHHHHHHHHHHh-----cCCChHH---HhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeE
Confidence 34567889999999998753 3333322 234555555555555555555544433220 00
Q ss_pred ----------------CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 385 ----------------PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 385 ----------------g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
=...+.-+-.+++||.+....|+.++|..+|.-|...
T Consensus 406 V~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 406 VTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred EeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 0234555666666666666666666666666665543
No 212
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=91.19 E-value=10 Score=36.95 Aligned_cols=118 Identities=17% Similarity=0.211 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Q 012772 305 ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY 384 (456)
Q Consensus 305 ~~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~ 384 (456)
+++...+...+..+...|+...|+++...+++++ .| -+..+..-+..|+..|+...|+.-.+.+-.+
T Consensus 152 ~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~--~W------da~l~~~Rakc~i~~~e~k~AI~Dlk~askL----- 218 (504)
T KOG0624|consen 152 IQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ--PW------DASLRQARAKCYIAEGEPKKAIHDLKQASKL----- 218 (504)
T ss_pred HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC--cc------hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----
Confidence 3445555566666777899999999888887653 22 3555666678999999999998776655432
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 012772 385 PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 443 (456)
Q Consensus 385 g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~ 443 (456)
..++ --.+|++++++...|+.+.+++..++.+. +.|+|-.-.--+..|..+
T Consensus 219 s~Dn---Te~~ykis~L~Y~vgd~~~sL~~iRECLK-----ldpdHK~Cf~~YKklkKv 269 (504)
T KOG0624|consen 219 SQDN---TEGHYKISQLLYTVGDAENSLKEIRECLK-----LDPDHKLCFPFYKKLKKV 269 (504)
T ss_pred cccc---hHHHHHHHHHHHhhhhHHHHHHHHHHHHc-----cCcchhhHHHHHHHHHHH
Confidence 2233 34688999999999999999988888876 678885443333333333
No 213
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=91.03 E-value=1.4 Score=34.22 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=39.4
Q ss_pred CccHHHHHHHHHHHHHHccCHHHHHHHHHHH----------------HHHHHHhcCCCChHHHHHHHHHHHHH
Q 012772 346 SVNLMQTREKLIKILMELEDWKEALAYCQLT----------------IPVYQRVYPQFHPLLGLQYYTCGKLE 402 (456)
Q Consensus 346 h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~----------------l~~~e~~~g~~hp~~~~~l~~La~~~ 402 (456)
+|.=..++..++..+...|++++|++.+..+ |.+++ .+|+.||.+...-.+|+.++
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~-~lg~~~plv~~~RRkL~~lL 89 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFE-LLGPGDPLVSEYRRKLASLL 89 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHH-HH-TT-HHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHH-HcCCCChHHHHHHHHHHHHh
Confidence 3333578889999999999999999887643 33333 67888898888888887765
No 214
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.92 E-value=1.7 Score=43.00 Aligned_cols=68 Identities=7% Similarity=0.071 Sum_probs=56.3
Q ss_pred CCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 345 FSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 345 ~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
-+|..+.+-..++.++..-|.++.++.+.++.|..+ +.. .....||.+......+++|+.+|..|+.+
T Consensus 433 ~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~----~D~-----~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 433 INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF----PDV-----NLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc----ccc-----HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 356777888899999999999999999999888643 332 34678899999999999999999999875
No 215
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=90.92 E-value=0.31 Score=28.24 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 393 LQYYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 393 ~~l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
..++.+|.++...|++++|...+++++++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35788999999999999999999999875
No 216
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.44 E-value=1.5 Score=37.05 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=39.8
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccC
Q 012772 312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELED 365 (456)
Q Consensus 312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~ 365 (456)
+..+..+..+|++++|+..+++.++ |||.|+.+-.+++..|-.+..+..
T Consensus 51 L~l~yayy~~~~y~~A~a~~~rFir-----LhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 51 LDLAYAYYKQGDYEEAIAAYDRFIR-----LHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH-----hCCCCCCccHHHHHHHHHHHHHhh
Confidence 4566678889999999999988865 799999988888888877776644
No 217
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=90.42 E-value=2 Score=44.82 Aligned_cols=117 Identities=17% Similarity=0.074 Sum_probs=81.7
Q ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH
Q 012772 311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 390 (456)
Q Consensus 311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~ 390 (456)
++..+.+.++.++|...++..+.++. -.|.|..++.+ .|-.+..+|+-++|.++.+..+. +.+-
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~-----k~~eHgeslAm---kGL~L~~lg~~~ea~~~vr~glr--------~d~~ 73 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILK-----KFPEHGESLAM---KGLTLNCLGKKEEAYELVRLGLR--------NDLK 73 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH-----hCCccchhHHh---ccchhhcccchHHHHHHHHHHhc--------cCcc
Confidence 34455555667777777777666665 24777776654 45566778999999999988775 4455
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhh
Q 012772 391 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKL 451 (456)
Q Consensus 391 ~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~~~~~ 451 (456)
-..-+.-+|.++..-.+|++|++.|+.|+.+ ++++ .+++..|+-++..|+-.+
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~-----~~dN---~qilrDlslLQ~QmRd~~ 126 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKI-----EKDN---LQILRDLSLLQIQMRDYE 126 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHhc-----CCCc---HHHHHHHHHHHHHHHhhh
Confidence 5566777899999999999999999999985 3333 455555555555555433
No 218
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.40 E-value=1.3 Score=36.78 Aligned_cols=60 Identities=22% Similarity=0.242 Sum_probs=52.1
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772 355 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 422 (456)
Q Consensus 355 ~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~ 422 (456)
.-+.+..+.|+++.|++.+.++|.+ -|..+..|++=|+.+..+|+.++|++-+.+|+++-
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l--------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa 107 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCL--------APERASAYNNRAQALRLQGDDEEALDDLNKALELA 107 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHh--------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 3445677889999999999999864 46778899999999999999999999999999864
No 219
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.37 E-value=0.42 Score=28.73 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 012772 352 TREKLIKILMELEDWKEALAYCQLTIPV 379 (456)
Q Consensus 352 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~ 379 (456)
++..+|.++..+|++++|.+++++++.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5678999999999999999999998763
No 220
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=90.32 E-value=1.1 Score=46.68 Aligned_cols=64 Identities=31% Similarity=0.311 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772 349 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 420 (456)
Q Consensus 349 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~ 420 (456)
++.+++-|++.|-..|++++|+++..++|.. .|...-.++.-|+++-+.|++.+|...+++|..
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~ 256 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILKHAGDLKEAAEAMDEARE 256 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4678899999999999999999999999853 477777888999999999999999998876544
No 221
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=90.22 E-value=3.5 Score=39.63 Aligned_cols=85 Identities=14% Similarity=0.070 Sum_probs=54.7
Q ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 012772 318 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----LEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 393 (456)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~ 393 (456)
+...++++.|.+.++...+ +.++ .+...|+.++.. .+.+.+|..+++.+.. .+ +....
T Consensus 141 ~L~~~R~dlA~k~l~~~~~-----~~eD-----~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~----~~----~~t~~ 202 (290)
T PF04733_consen 141 LLKMNRPDLAEKELKNMQQ-----IDED-----SILTQLAEAWVNLATGGEKYQDAFYIFEELSD----KF----GSTPK 202 (290)
T ss_dssp HHHTT-HHHHHHHHHHHHC-----CSCC-----HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC----CS------SHH
T ss_pred HHHcCCHHHHHHHHHHHHh-----cCCc-----HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh----cc----CCCHH
Confidence 3456888888887766532 3332 223344444333 3468888888877532 22 23456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772 394 QYYTCGKLEWFLGDTENAIKSMTEAVE 420 (456)
Q Consensus 394 ~l~~La~~~~~~g~~~eA~~~l~~Al~ 420 (456)
.++.+|.+++.+|+++||++.+++|++
T Consensus 203 ~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 203 LLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 789999999999999999999999864
No 222
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.14 E-value=0.22 Score=30.86 Aligned_cols=27 Identities=30% Similarity=0.308 Sum_probs=23.6
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHH
Q 012772 387 FHPLLGLQYYTCGKLEWFLGDTENAIK 413 (456)
Q Consensus 387 ~hp~~~~~l~~La~~~~~~g~~~eA~~ 413 (456)
.+|.-...+++||.++..+|++++|++
T Consensus 8 ~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 8 LNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred HCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 467778899999999999999999863
No 223
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=90.00 E-value=5.5 Score=39.62 Aligned_cols=82 Identities=15% Similarity=0.286 Sum_probs=60.6
Q ss_pred CHHHHHHHHH----HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCC---------------------CCccHHH
Q 012772 297 SKEEIKKIAS----EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHP---------------------FSVNLMQ 351 (456)
Q Consensus 297 ~~~~~~~~~~----~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p---------------------~h~~~~~ 351 (456)
+++.+..++. -+.+++..+..+..+|+++.|.++.++++-..++.+|| .|.....
T Consensus 25 Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~ffl 104 (360)
T PF04910_consen 25 DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFL 104 (360)
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHH
Confidence 5555555543 25778888888889999999999999998776654443 3445566
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Q 012772 352 TREKLIKILMELEDWKEALAYCQLTIP 378 (456)
Q Consensus 352 ~~~~L~~~~~~~g~~~~A~~~~~~~l~ 378 (456)
++..-+..+.+.|-|.-|+++++-++.
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLls 131 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLS 131 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 667777788889999999999985543
No 224
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.82 E-value=0.49 Score=29.30 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=20.7
Q ss_pred ccHHHHHHHHHHHHHHccCHHHHHH
Q 012772 347 VNLMQTREKLIKILMELEDWKEALA 371 (456)
Q Consensus 347 ~~~~~~~~~L~~~~~~~g~~~~A~~ 371 (456)
|.-..++.+||.+|...|++++|++
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3346778999999999999999963
No 225
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.28 E-value=0.47 Score=27.31 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 012772 393 LQYYTCGKLEWFLGDTENAIKSMTE 417 (456)
Q Consensus 393 ~~l~~La~~~~~~g~~~eA~~~l~~ 417 (456)
...+.||.++..+|+.++|+..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 3578899999999999999988764
No 226
>PLN03077 Protein ECB2; Provisional
Probab=89.06 E-value=4.2 Score=45.52 Aligned_cols=90 Identities=16% Similarity=0.111 Sum_probs=65.8
Q ss_pred HhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q 012772 316 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQY 395 (456)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l 395 (456)
..+...|+.++|++++++..+ .-+.|+... +..+..++.+.|++++|.+++.++... +| ..|.. .++
T Consensus 562 ~~~~~~G~~~~A~~lf~~M~~---~g~~Pd~~T----~~~ll~a~~~~g~v~ea~~~f~~M~~~----~g-i~P~~-~~y 628 (857)
T PLN03077 562 TGYVAHGKGSMAVELFNRMVE---SGVNPDEVT----FISLLCACSRSGMVTQGLEYFHSMEEK----YS-ITPNL-KHY 628 (857)
T ss_pred HHHHHcCCHHHHHHHHHHHHH---cCCCCCccc----HHHHHHHHhhcChHHHHHHHHHHHHHH----hC-CCCch-HHH
Confidence 345567889999998887653 224455433 455667889999999999999877532 22 33433 678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 012772 396 YTCGKLEWFLGDTENAIKSMTEA 418 (456)
Q Consensus 396 ~~La~~~~~~g~~~eA~~~l~~A 418 (456)
..|..++...|++++|.+++++.
T Consensus 629 ~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 629 ACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHC
Confidence 88999999999999999998863
No 227
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=88.95 E-value=4 Score=43.53 Aligned_cols=79 Identities=13% Similarity=0.032 Sum_probs=62.2
Q ss_pred cCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 342 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 342 l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
+.|+|| .+...|+.-|..+++.+.|.++++++|++ -|++|+. .+.-||.+...++++.+|+++..-|++-
T Consensus 473 ~d~~dp---~~if~lalq~A~~R~l~sAl~~~~eaL~l----~~~~~~~---~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 473 FDPTDP---LVIFYLALQYAEQRQLTSALDYAREALAL----NRGDSAK---AWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred cCCCCc---hHHHHHHHHHHHHHhHHHHHHHHHHHHHh----cCCccHH---HHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 678887 55678888999999999999999999863 4566654 3555678888899999999999999887
Q ss_pred HHHhcCCCC
Q 012772 422 LRITHGTNS 430 (456)
Q Consensus 422 ~~~~~G~~h 430 (456)
...-||..|
T Consensus 543 ~~~N~~l~~ 551 (799)
T KOG4162|consen 543 FGDNHVLMD 551 (799)
T ss_pred hhhhhhhch
Confidence 666544443
No 228
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=88.91 E-value=2.7 Score=45.83 Aligned_cols=24 Identities=17% Similarity=-0.003 Sum_probs=12.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 012772 395 YYTCGKLEWFLGDTENAIKSMTEA 418 (456)
Q Consensus 395 l~~La~~~~~~g~~~eA~~~l~~A 418 (456)
++.|...|.+.|++++|.+.+++.
T Consensus 363 ~~~Li~~y~k~G~~~~A~~vf~~m 386 (697)
T PLN03081 363 NTALVDLYSKWGRMEDARNVFDRM 386 (697)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHhC
Confidence 344445555555555555555543
No 229
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=88.75 E-value=9.9 Score=39.71 Aligned_cols=104 Identities=13% Similarity=0.035 Sum_probs=62.3
Q ss_pred HHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHH----------------
Q 012772 315 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIP---------------- 378 (456)
Q Consensus 315 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~---------------- 378 (456)
|..+...|++++|++...++++. .|.+.+.+..-|.++-..|++.+|.+....+-.
T Consensus 201 Aqhyd~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 201 AQHYDYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 33444456666666666655432 334455555666666666666666655432211
Q ss_pred -----------HHHHhcCCC-Ch-------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 012772 379 -----------VYQRVYPQF-HP-------LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH 426 (456)
Q Consensus 379 -----------~~e~~~g~~-hp-------~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~ 426 (456)
+...+.-.+ .| .-.+...+.|..|..+|++..|++.+.....++...+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~ 339 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFE 339 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 111111111 22 2245556669999999999999999999999988864
No 230
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=88.68 E-value=14 Score=37.02 Aligned_cols=112 Identities=14% Similarity=0.079 Sum_probs=70.9
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHH--HccCHHHHHHHHHHHHHHHHH--------
Q 012772 313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILM--ELEDWKEALAYCQLTIPVYQR-------- 382 (456)
Q Consensus 313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~--~~g~~~~A~~~~~~~l~~~e~-------- 382 (456)
+.|..+..+++|..|.++++.+... +++... .+.+..|+..|. +.-++++|.++.++.+.....
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~r----l~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l 209 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRR----LPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGL 209 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh----CCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHH
Confidence 3444556789999999998887642 444333 566677777665 567888888888766542111
Q ss_pred ------------hcCC-------C---ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----hcCCCC
Q 012772 383 ------------VYPQ-------F---HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI----THGTNS 430 (456)
Q Consensus 383 ------------~~g~-------~---hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~----~~G~~h 430 (456)
+.+. . .+.+..-++..|.--..+|+|+.|.-.+-+|++.+.. .||-+.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q~rL~~~g~~t 283 (379)
T PF09670_consen 210 KELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQHRLARYGIDT 283 (379)
T ss_pred HHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 1110 0 2333344444455555689999999999999986554 455544
No 231
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=88.27 E-value=0.11 Score=52.37 Aligned_cols=42 Identities=26% Similarity=0.650 Sum_probs=31.7
Q ss_pred CCccCcCcCCCCCCccCcCCCC-cccccHHhhhhcHHHhHHhchhhH
Q 012772 26 SISRCDGCFASSNLKKCSACQV-VWYCGSNCQKLDWKLHRLECQVLS 71 (456)
Q Consensus 26 ~~~~C~~C~~~~~~~~C~~C~~-v~yCs~~C~~~~~~~H~~EC~~l~ 71 (456)
...-|.+|... ..+ .|.| ..|||.+||..+|+.|+.-|..-.
T Consensus 526 kKQWC~nC~~E-Aiy---~CCWNTSYCsveCQQ~HW~~H~ksCrrk~ 568 (588)
T KOG3612|consen 526 KKQWCYNCLDE-AIY---HCCWNTSYCSVECQQGHWPEHRKSCRRKK 568 (588)
T ss_pred HHHHHHhhhHH-HHH---HhhccccccCcchhhccchhHhhhhcccC
Confidence 34568888877 222 3444 589999999999999999998554
No 232
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=88.20 E-value=7.3 Score=34.59 Aligned_cols=95 Identities=15% Similarity=0.108 Sum_probs=64.5
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC-CCChHH
Q 012772 313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-QFHPLL 391 (456)
Q Consensus 313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g-~~hp~~ 391 (456)
..+..+.+-|++.||...|++++. |+.-.+ ..++-.++++....|++..|....+++.+. -| .-.|+
T Consensus 94 rLa~al~elGr~~EA~~hy~qals------G~fA~d-~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~----~pa~r~pd- 161 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALS------GIFAHD-AAMLLGLAQAQFAIQEFAAAQQTLEDLMEY----NPAFRSPD- 161 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhc------cccCCC-HHHHHHHHHHHHhhccHHHHHHHHHHHhhc----CCccCCCC-
Confidence 345556677999999999888763 333222 234457888899999999888877665421 12 11222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
...-+|.++..+|++++|+..++.|+.-
T Consensus 162 --~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 162 --GHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred --chHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 2334688888999999999988888753
No 233
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.19 E-value=4.6 Score=39.32 Aligned_cols=86 Identities=14% Similarity=0.072 Sum_probs=56.9
Q ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 012772 318 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 397 (456)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~ 397 (456)
+.+..+|..|+.+++-.... +... --++-..++..+..+|+|++|+..+.-+.. .+.+. +-...+
T Consensus 32 fls~rDytGAislLefk~~~-----~~EE--E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~-------~~~~~-~el~vn 96 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNL-----DREE--EDSLQLWIAHCYFHLGDYEEALNVYTFLMN-------KDDAP-AELGVN 96 (557)
T ss_pred HHhcccchhHHHHHHHhhcc-----chhh--hHHHHHHHHHHHHhhccHHHHHHHHHHHhc-------cCCCC-cccchh
Confidence 33456888888765544321 1111 134456789999999999999888765432 22222 445667
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 012772 398 CGKLEWFLGDTENAIKSMTEA 418 (456)
Q Consensus 398 La~~~~~~g~~~eA~~~l~~A 418 (456)
||-.++.+|+|.||.....+|
T Consensus 97 LAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 97 LACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhC
Confidence 888888999999988777664
No 234
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=87.96 E-value=2.5 Score=37.39 Aligned_cols=68 Identities=16% Similarity=0.252 Sum_probs=53.3
Q ss_pred cHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772 348 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 422 (456)
Q Consensus 348 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~ 422 (456)
.+..-+..|+....+.|++.||..++++++.. +| ... ...+..+|+.+...++..+|...|++..+.-
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG---~f-A~d---~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~ 154 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSG---IF-AHD---AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN 154 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc---cc-CCC---HHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Confidence 35666788999999999999999999998753 11 122 3457788999999999999999988766543
No 235
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.95 E-value=1.4 Score=29.10 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=23.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772 396 YTCGKLEWFLGDTENAIKSMTEAVE 420 (456)
Q Consensus 396 ~~La~~~~~~g~~~eA~~~l~~Al~ 420 (456)
+.||++|...|+.+.|.+.+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6799999999999999999999884
No 236
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.71 E-value=18 Score=39.53 Aligned_cols=105 Identities=15% Similarity=0.123 Sum_probs=75.7
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCC-Ccc----HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC-
Q 012772 313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPF-SVN----LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ- 386 (456)
Q Consensus 313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~-h~~----~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~- 386 (456)
-.|....++.++.+|..+..++.. .+++. +.. .+....--+.+....|+.++|+++++.++. .+|.
T Consensus 420 l~aW~~~s~~r~~ea~~li~~l~~----~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~----~L~~~ 491 (894)
T COG2909 420 LQAWLLASQHRLAEAETLIARLEH----FLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALV----QLPEA 491 (894)
T ss_pred HHHHHHHHccChHHHHHHHHHHHH----HhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hcccc
Confidence 355556678899999887666643 34442 222 222222334466778999999999998875 3454
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 012772 387 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 425 (456)
Q Consensus 387 ~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~ 425 (456)
........+..+|.+.+-.|++++|..+.++|.++..+.
T Consensus 492 ~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~ 530 (894)
T COG2909 492 AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH 530 (894)
T ss_pred cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc
Confidence 445566788899999999999999999999999998774
No 237
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=87.70 E-value=6.7 Score=41.03 Aligned_cols=86 Identities=10% Similarity=0.031 Sum_probs=50.6
Q ss_pred ChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q 012772 323 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE--------DWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 394 (456)
Q Consensus 323 ~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g--------~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~ 394 (456)
...+|+.++++++++ .|+. ..++..++.+|.... ++..+.+..++++. + +..|.....
T Consensus 357 ~~~~A~~lle~Ai~l-----dP~~---a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a----l--~~~~~~~~~ 422 (517)
T PRK10153 357 SLNKASDLLEEILKS-----EPDF---TYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA----L--PELNVLPRI 422 (517)
T ss_pred HHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh----c--ccCcCChHH
Confidence 466777888877653 2333 444444454443322 22233333332221 1 122222456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772 395 YYTCGKLEWFLGDTENAIKSMTEAVEIL 422 (456)
Q Consensus 395 l~~La~~~~~~g~~~eA~~~l~~Al~i~ 422 (456)
+.-+|..+...|++++|...+++|+++-
T Consensus 423 ~~ala~~~~~~g~~~~A~~~l~rAl~L~ 450 (517)
T PRK10153 423 YEILAVQALVKGKTDEAYQAINKAIDLE 450 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 7777888888999999999999999987
No 238
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.55 E-value=4.7 Score=37.73 Aligned_cols=115 Identities=14% Similarity=0.192 Sum_probs=74.2
Q ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 012772 319 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC 398 (456)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~L 398 (456)
++-|+.+.|...++++.+.-.+.-+-.+. .-+..+.+.+|.-..+|.+|...+.+.+ ...|..+...++-
T Consensus 223 MQ~GD~k~a~~yf~~vek~~~kL~~~q~~--~~V~~n~a~i~lg~nn~a~a~r~~~~i~--------~~D~~~~~a~NnK 292 (366)
T KOG2796|consen 223 MQIGDIKTAEKYFQDVEKVTQKLDGLQGK--IMVLMNSAFLHLGQNNFAEAHRFFTEIL--------RMDPRNAVANNNK 292 (366)
T ss_pred HhcccHHHHHHHHHHHHHHHhhhhccchh--HHHHhhhhhheecccchHHHHHHHhhcc--------ccCCCchhhhchH
Confidence 45578777777777776443332221111 2223455666667778877777665543 4667778888999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHh
Q 012772 399 GKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY 449 (456)
Q Consensus 399 a~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~~~ 449 (456)
|..++..|+..+|++.++.++.+. |.|-.+..++.+|..+ .|+.|
T Consensus 293 ALcllYlg~l~DAiK~~e~~~~~~-----P~~~l~es~~~nL~tm-yEL~Y 337 (366)
T KOG2796|consen 293 ALCLLYLGKLKDALKQLEAMVQQD-----PRHYLHESVLFNLTTM-YELEY 337 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC-----CccchhhhHHHHHHHH-HHHHh
Confidence 999999999999999999988875 3444444455444433 24444
No 239
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.43 E-value=12 Score=33.37 Aligned_cols=70 Identities=13% Similarity=0.109 Sum_probs=56.4
Q ss_pred cCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 012772 342 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTE 417 (456)
Q Consensus 342 l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~ 417 (456)
.+.+++-.+-++ .++..+.+.|++++|+...+.++. .+.+.-..+..-..||.++..+|++++|++.|..
T Consensus 82 n~~t~Ya~laaL-~lAk~~ve~~~~d~A~aqL~~~l~-----~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t 151 (207)
T COG2976 82 NGKTIYAVLAAL-ELAKAEVEANNLDKAEAQLKQALA-----QTKDENLKALAALRLARVQLQQKKADAALKTLDT 151 (207)
T ss_pred ccccHHHHHHHH-HHHHHHHhhccHHHHHHHHHHHHc-----cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 444455554443 678889999999999999888773 5678888899999999999999999999888763
No 240
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.42 E-value=11 Score=33.23 Aligned_cols=71 Identities=15% Similarity=0.080 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012772 349 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 424 (456)
Q Consensus 349 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~ 424 (456)
+-.++..++..|.+.|++++|++.+.++.+ .. ..--.+...++++-.+....|++....+++.+|..+++.
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~---~~--~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~ 105 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARD---YC--TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK 105 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhh---hc--CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 456678999999999999999999998653 22 223344556777788888999999999999999999998
No 241
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=87.19 E-value=3.4 Score=32.03 Aligned_cols=55 Identities=25% Similarity=0.288 Sum_probs=38.9
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------HHHHHhcCCCCchHHHHHHHHHHH
Q 012772 388 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAV----------------EILRITHGTNSPFMKELILKLEEA 443 (456)
Q Consensus 388 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al----------------~i~~~~~G~~h~~~~~~~~~l~~~ 443 (456)
+|.=....+.||..+...|++++|++.|-+.+ +|++ .+|++||.+.....+|..+
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~-~lg~~~plv~~~RRkL~~l 88 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFE-LLGPGDPLVSEYRRKLASL 88 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHH-HH-TT-HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHH-HcCCCChHHHHHHHHHHHH
Confidence 34444778999999999999999998876433 3333 3799999999888887654
No 242
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.18 E-value=3.2 Score=37.23 Aligned_cols=64 Identities=20% Similarity=0.127 Sum_probs=50.6
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 355 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 355 ~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
.=++-+...|+|++|..-|..+|++... ...-.....|.+=|...+.+++++.|++-..+|+++
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~---~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel 163 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPS---TSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL 163 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCcc---ccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc
Confidence 3455667789999999999999986432 334667778888899999999999999888777764
No 243
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=87.07 E-value=0.37 Score=34.22 Aligned_cols=21 Identities=29% Similarity=0.782 Sum_probs=15.3
Q ss_pred CccCcCCCCc----------ccccHHhhhhc
Q 012772 39 LKKCSACQVV----------WYCGSNCQKLD 59 (456)
Q Consensus 39 ~~~C~~C~~v----------~yCs~~C~~~~ 59 (456)
.++|+.|+.. +|||+.|+.-|
T Consensus 6 ~v~CP~C~k~~~w~~~~~~rPFCS~RCk~ID 36 (62)
T PRK00418 6 TVNCPTCGKPVEWGEISPFRPFCSKRCQLID 36 (62)
T ss_pred cccCCCCCCcccccCCCCcCCcccHHHHhhh
Confidence 3566666543 79999999876
No 244
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=86.31 E-value=15 Score=39.00 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=14.1
Q ss_pred ccHHHHHHHHHHHHHHccCHHHHHHHHH
Q 012772 347 VNLMQTREKLIKILMELEDWKEALAYCQ 374 (456)
Q Consensus 347 ~~~~~~~~~L~~~~~~~g~~~~A~~~~~ 374 (456)
..+-.+..+++..+.++..|++|.+||.
T Consensus 793 ~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 793 EGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555543
No 245
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=86.27 E-value=14 Score=34.65 Aligned_cols=66 Identities=18% Similarity=0.213 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 012772 349 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMT 416 (456)
Q Consensus 349 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~ 416 (456)
...+.-.+|..|...|+|++|+++++.+...|++ .+.+......+..|...+...|+.++.+.+.-
T Consensus 177 ~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~--egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 177 ASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRR--EGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3455568899999999999999999999777664 37888889999999999999999887665543
No 246
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=85.73 E-value=2.3 Score=37.75 Aligned_cols=51 Identities=18% Similarity=-0.056 Sum_probs=43.4
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchH
Q 012772 383 VYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM 433 (456)
Q Consensus 383 ~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~ 433 (456)
.-|...|.....|.+|..-|..+|+++.|+..-+.|++=+.++.|.+||.+
T Consensus 131 ~~~~E~~~rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~v 181 (181)
T PF09311_consen 131 SQGYEIPARLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPDV 181 (181)
T ss_dssp -S-TTS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHHH
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCC
Confidence 345788999999999999999999999999999999999999999999974
No 247
>PRK11906 transcriptional regulator; Provisional
Probab=85.64 E-value=5.2 Score=40.51 Aligned_cols=68 Identities=9% Similarity=-0.033 Sum_probs=57.5
Q ss_pred cCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772 342 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 420 (456)
Q Consensus 342 l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~ 420 (456)
++|.++ .++..+|.++...|+++.|...+++++. -.|..+..++..|.+....|+.++|...+++|++
T Consensus 333 ld~~Da---~a~~~~g~~~~~~~~~~~a~~~f~rA~~--------L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 333 ITTVDG---KILAIMGLITGLSGQAKVSHILFEQAKI--------HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred cCCCCH---HHHHHHHHHHHhhcchhhHHHHHHHHhh--------cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 455554 4556778888888999999999999984 5788899999999999999999999999999765
No 248
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.59 E-value=5.9 Score=37.58 Aligned_cols=74 Identities=23% Similarity=0.204 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 012772 350 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN 429 (456)
Q Consensus 350 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~ 429 (456)
.......+..|...|.+.+|.+++++++. .||..-.....|-.++...|+--+|.+.|++-.+.++..+|-+
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~lt--------ldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~ 350 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALT--------LDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGID 350 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhh--------cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCC
Confidence 34455667788899999999999999984 6888888888888999999999999999999999999999976
Q ss_pred Cc
Q 012772 430 SP 431 (456)
Q Consensus 430 h~ 431 (456)
-.
T Consensus 351 vd 352 (361)
T COG3947 351 VD 352 (361)
T ss_pred cc
Confidence 44
No 249
>PLN02789 farnesyltranstransferase
Probab=85.55 E-value=9.4 Score=37.29 Aligned_cols=94 Identities=14% Similarity=0.061 Sum_probs=53.0
Q ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHHhcCC------------
Q 012772 320 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE-DWKEALAYCQLTIPVYQRVYPQ------------ 386 (456)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g-~~~~A~~~~~~~l~~~e~~~g~------------ 386 (456)
..++.++|+.++.+++.+ .|.|+ .+...-+.++..+| ++++|+.++.+++..-.+-|..
T Consensus 49 ~~e~serAL~lt~~aI~l-----nP~~y---taW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 49 SDERSPRALDLTADVIRL-----NPGNY---TVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred cCCCCHHHHHHHHHHHHH-----CchhH---HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcC
Confidence 356778888888777653 34443 34444455555566 5677777776666432111111
Q ss_pred ----------------CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 387 ----------------FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 387 ----------------~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
.+|.--..++..+.++..+|++++|++++.+++++
T Consensus 121 ~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 121 PDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred chhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 11222223334455556677788888888887765
No 250
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=85.17 E-value=14 Score=37.78 Aligned_cols=89 Identities=16% Similarity=0.059 Sum_probs=58.4
Q ss_pred ChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC----Ch---------
Q 012772 323 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF----HP--------- 389 (456)
Q Consensus 323 ~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~----hp--------- 389 (456)
+.+.-+++-++++++. ++.+.++.-|+.- ...-..+|.++++++++.-|..+|.. |.
T Consensus 183 np~aRIkaA~eALei~--------pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~ 252 (539)
T PF04184_consen 183 NPQARIKAAKEALEIN--------PDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHR 252 (539)
T ss_pred CHHHHHHHHHHHHHhh--------hhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhc
Confidence 5555566666676653 3334443333321 12346788888988888888887753 21
Q ss_pred ----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 390 ----LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 390 ----~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
.....-..||...+++|+.+||+++++.-++-
T Consensus 253 Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke 288 (539)
T PF04184_consen 253 RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKE 288 (539)
T ss_pred cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 12445567899999999999999999876654
No 251
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=85.07 E-value=10 Score=28.38 Aligned_cols=53 Identities=19% Similarity=0.051 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--hcCCCCchHHH-HHHHHHHH
Q 012772 391 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI--THGTNSPFMKE-LILKLEEA 443 (456)
Q Consensus 391 ~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~--~~G~~h~~~~~-~~~~l~~~ 443 (456)
.|..+...|.-.-..|+|++|..+|.+|++.+.. .+|.-.|...+ +..+..+-
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir~K~~eY 60 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQEKSNEY 60 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 4556666777777899999999999999999988 55533333333 33444433
No 252
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.02 E-value=1.6 Score=25.07 Aligned_cols=24 Identities=25% Similarity=0.171 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHH
Q 012772 352 TREKLIKILMELEDWKEALAYCQL 375 (456)
Q Consensus 352 ~~~~L~~~~~~~g~~~~A~~~~~~ 375 (456)
+...|+.++..+|++++|...+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 567899999999999999998753
No 253
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=84.78 E-value=16 Score=29.87 Aligned_cols=83 Identities=14% Similarity=0.080 Sum_probs=57.5
Q ss_pred HHHHHHHHHHH--HHccCHHHHHHHHHHHHHHHHHhcCC---CCh-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012772 350 MQTREKLIKIL--MELEDWKEALAYCQLTIPVYQRVYPQ---FHP-LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 423 (456)
Q Consensus 350 ~~~~~~L~~~~--~~~g~~~~A~~~~~~~l~~~e~~~g~---~hp-~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~ 423 (456)
+.++..|...- +.-|.|++|..-|+++.++-+.+-+. +|- .=+..+-.|+..+..+|+|++++..-.+|+..+.
T Consensus 7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN 86 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN 86 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence 33444444433 33489999999999999998866554 333 2356777889999999999999999999999998
Q ss_pred HhcCCCCchH
Q 012772 424 ITHGTNSPFM 433 (456)
Q Consensus 424 ~~~G~~h~~~ 433 (456)
+. |.=|...
T Consensus 87 RR-GEL~qde 95 (144)
T PF12968_consen 87 RR-GELHQDE 95 (144)
T ss_dssp HH---TTSTH
T ss_pred hc-ccccccc
Confidence 85 6556443
No 254
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=84.74 E-value=4 Score=37.99 Aligned_cols=57 Identities=14% Similarity=0.114 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHH
Q 012772 325 QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME-LEDWKEALAYCQLTIPVYQ 381 (456)
Q Consensus 325 ~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~-~g~~~~A~~~~~~~l~~~e 381 (456)
++|.+.|+.+..+..+.|+|.||..+.+.-+.+..|.+ +|+.++|.++++++++-.-
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 46777888888888888999999999999888877655 7999999999999887543
No 255
>PRK01343 zinc-binding protein; Provisional
Probab=84.65 E-value=0.65 Score=32.36 Aligned_cols=13 Identities=23% Similarity=0.833 Sum_probs=11.0
Q ss_pred CcccccHHhhhhc
Q 012772 47 VVWYCGSNCQKLD 59 (456)
Q Consensus 47 ~v~yCs~~C~~~~ 59 (456)
+.+|||+.|+.-|
T Consensus 23 ~rPFCS~RC~~iD 35 (57)
T PRK01343 23 AYPFCSERCRDID 35 (57)
T ss_pred CCcccCHHHhhhh
Confidence 4589999999876
No 256
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=84.00 E-value=6.6 Score=41.97 Aligned_cols=88 Identities=20% Similarity=0.260 Sum_probs=58.2
Q ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHH--HHHHHHHHHHHhcCCCChHHHHHH
Q 012772 318 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALA--YCQLTIPVYQRVYPQFHPLLGLQY 395 (456)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~--~~~~~l~~~e~~~g~~hp~~~~~l 395 (456)
+..+|.+.+|.+.|..++. +.|+|+..+ ..+|.++.+.|+-.-|.. +...++. +++..|. .+
T Consensus 694 ~~~~~~~~EA~~af~~Al~-----ldP~hv~s~---~Ala~~lle~G~~~la~~~~~L~dalr-----~dp~n~e---aW 757 (799)
T KOG4162|consen 694 LEVKGQLEEAKEAFLVALA-----LDPDHVPSM---TALAELLLELGSPRLAEKRSLLSDALR-----LDPLNHE---AW 757 (799)
T ss_pred HHHHHhhHHHHHHHHHHHh-----cCCCCcHHH---HHHHHHHHHhCCcchHHHHHHHHHHHh-----hCCCCHH---HH
Confidence 4455677777776665543 457776544 467777777775444444 6665553 3333333 58
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 396 YTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 396 ~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
+.||.+...+|+.++|.+.|+-|++.
T Consensus 758 ~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 758 YYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhh
Confidence 88888888888888888888888764
No 257
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.78 E-value=1.3 Score=42.87 Aligned_cols=96 Identities=18% Similarity=0.229 Sum_probs=70.8
Q ss_pred HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772 309 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 388 (456)
Q Consensus 309 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~h 388 (456)
..+.-+|..+..+|.+++|++.+-+++. -++..+.++..=+.+++.++.+..|+.=|..++.+ .
T Consensus 115 ~e~k~~A~eAln~G~~~~ai~~~t~ai~--------lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n 178 (377)
T KOG1308|consen 115 NDKKVQASEALNDGEFDTAIELFTSAIE--------LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------N 178 (377)
T ss_pred HHHHHHHHHHhcCcchhhhhcccccccc--------cCCchhhhcccccceeeeccCCchhhhhhhhhhcc--------C
Confidence 3444566677889999999998776653 36666777777888999999999999999888754 4
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772 389 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 420 (456)
Q Consensus 389 p~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~ 420 (456)
|+.+.-+--=|.+...+|++++|.+.|+.|.+
T Consensus 179 ~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~k 210 (377)
T KOG1308|consen 179 PDSAKGYKFRGYAERLLGNWEEAAHDLALACK 210 (377)
T ss_pred cccccccchhhHHHHHhhchHHHHHHHHHHHh
Confidence 44444444445666678888888888887765
No 258
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=83.74 E-value=9.6 Score=42.07 Aligned_cols=105 Identities=17% Similarity=0.106 Sum_probs=82.3
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772 313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 392 (456)
Q Consensus 313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~ 392 (456)
.....|.+.|++..|++.+.++. .+.|.|. -.....+.+...+|.|++|+..+...+....... +.-...|
T Consensus 601 gLGeAY~~sGry~~AlKvF~kAs-----~LrP~s~---y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~-~~q~gLa 671 (1238)
T KOG1127|consen 601 GLGEAYPESGRYSHALKVFTKAS-----LLRPLSK---YGRFKEAVMECDNGKYKEALDALGLIIYAFSLER-TGQNGLA 671 (1238)
T ss_pred HHHHHHHhcCceehHHHhhhhhH-----hcCcHhH---HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HhhhhHH
Confidence 45556788899999998887763 3555553 3455667777889999999999998887766443 3445678
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 012772 393 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH 426 (456)
Q Consensus 393 ~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~ 426 (456)
..+..+++.+.-.|-+..|..+++++++++....
T Consensus 672 E~~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 672 ESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999888775
No 259
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=83.53 E-value=2.1 Score=24.38 Aligned_cols=29 Identities=24% Similarity=0.413 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 012772 351 QTREKLIKILMELEDWKEALAYCQLTIPV 379 (456)
Q Consensus 351 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~ 379 (456)
.++..++.++..+|++++|..++++++.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35678899999999999999999988764
No 260
>PRK10941 hypothetical protein; Provisional
Probab=83.30 E-value=18 Score=34.41 Aligned_cols=85 Identities=15% Similarity=0.177 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 012772 349 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT 428 (456)
Q Consensus 349 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~ 428 (456)
+.+...+|-.+|.+.++|+.|+...++++. +.|++| .....-|.+|..+|.+..|..=|+.-++ .-|
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~-----l~P~dp---~e~RDRGll~~qL~c~~~A~~DL~~fl~-----~~P 246 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQ-----FDPEDP---YEIRDRGLIYAQLDCEHVALSDLSYFVE-----QCP 246 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHH-----hCCCCH---HHHHHHHHHHHHcCCcHHHHHHHHHHHH-----hCC
Confidence 567788999999999999999999998884 445555 3455567777788888877765554433 446
Q ss_pred CCchHHHHHHHHHHHHHH
Q 012772 429 NSPFMKELILKLEEAQAE 446 (456)
Q Consensus 429 ~h~~~~~~~~~l~~~~~e 446 (456)
+.|....+...+..++..
T Consensus 247 ~dp~a~~ik~ql~~l~~~ 264 (269)
T PRK10941 247 EDPISEMIRAQIHSIEQK 264 (269)
T ss_pred CchhHHHHHHHHHHHhhc
Confidence 778777777777777653
No 261
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=83.08 E-value=1.1 Score=25.41 Aligned_cols=24 Identities=21% Similarity=0.576 Sum_probs=17.8
Q ss_pred CCCCCCCcccCCCCCCeeeccCCC
Q 012772 271 DDGCSGFLLRDSDDKGFTCQQCGL 294 (456)
Q Consensus 271 C~~C~~~~~~~~~~~~~~C~~C~~ 294 (456)
|.+|...+.+......|.|+.||.
T Consensus 1 C~sC~~~i~~r~~~v~f~CPnCG~ 24 (24)
T PF07754_consen 1 CTSCGRPIAPREQAVPFPCPNCGF 24 (24)
T ss_pred CccCCCcccCcccCceEeCCCCCC
Confidence 678877776655566799999983
No 262
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=82.92 E-value=11 Score=32.75 Aligned_cols=95 Identities=21% Similarity=0.194 Sum_probs=64.2
Q ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 012772 318 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 397 (456)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~ 397 (456)
+...|++++|...+++++. ..|............+..+...+++++|+....+++...... ....+..
T Consensus 140 ~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~ 207 (291)
T COG0457 140 LYELGDYEEALELYEKALE-----LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-------DAEALLN 207 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh-----cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-------chHHHHH
Confidence 4456788888888777732 222122344444555555777788888888888877654433 5667777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012772 398 CGKLEWFLGDTENAIKSMTEAVEILRI 424 (456)
Q Consensus 398 La~~~~~~g~~~eA~~~l~~Al~i~~~ 424 (456)
++..+...+++++|...+.+++.....
T Consensus 208 ~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 208 LGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred hhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 788888888888888888888776654
No 263
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.77 E-value=0.66 Score=32.84 Aligned_cols=11 Identities=27% Similarity=0.933 Sum_probs=9.6
Q ss_pred ccccHHhhhhc
Q 012772 49 WYCGSNCQKLD 59 (456)
Q Consensus 49 ~yCs~~C~~~~ 59 (456)
+|||+.||.-|
T Consensus 27 PFCSkRCklID 37 (65)
T COG3024 27 PFCSKRCKLID 37 (65)
T ss_pred cchhHhhhhcc
Confidence 79999999775
No 264
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=82.62 E-value=22 Score=37.44 Aligned_cols=100 Identities=13% Similarity=0.140 Sum_probs=70.1
Q ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 012772 320 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG 399 (456)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La 399 (456)
+..+|++|++.|+.++. ++|+|. +++..|+-+-+++++++...+-=.+.|. .-|..-..+..+|
T Consensus 87 ~dK~Y~eaiKcy~nAl~-----~~~dN~---qilrDlslLQ~QmRd~~~~~~tr~~LLq--------l~~~~ra~w~~~A 150 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALK-----IEKDNL---QILRDLSLLQIQMRDYEGYLETRNQLLQ--------LRPSQRASWIGFA 150 (700)
T ss_pred hhhhHHHHHHHHHHHHh-----cCCCcH---HHHHHHHHHHHHHHhhhhHHHHHHHHHH--------hhhhhHHHHHHHH
Confidence 34689999999999976 456664 5556788888889998877766555553 3445556677888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHH
Q 012772 400 KLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELI 437 (456)
Q Consensus 400 ~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~ 437 (456)
..+...|++..|.+.+++-..... .+++...+....
T Consensus 151 vs~~L~g~y~~A~~il~ef~~t~~--~~~s~~~~e~se 186 (700)
T KOG1156|consen 151 VAQHLLGEYKMALEILEEFEKTQN--TSPSKEDYEHSE 186 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc--cCCCHHHHHHHH
Confidence 888899999999888877666555 344444444433
No 265
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=82.14 E-value=14 Score=34.49 Aligned_cols=74 Identities=15% Similarity=0.206 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 012772 370 LAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA 447 (456)
Q Consensus 370 ~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~ 447 (456)
+++..+++..+++. ..+........+||.-|...|++++|.++|+.+...+... | -.....+++.+|.+|-..+
T Consensus 158 I~lL~~A~~~f~~~--~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e-g-W~~l~~~~l~~l~~Ca~~~ 231 (247)
T PF11817_consen 158 IELLEKAYEQFKKY--GQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE-G-WWSLLTEVLWRLLECAKRL 231 (247)
T ss_pred HHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC-C-cHHHHHHHHHHHHHHHHHh
Confidence 33444444444322 2277888888999999999999999999999996655543 2 4567778888888776544
No 266
>PLN02789 farnesyltranstransferase
Probab=81.95 E-value=15 Score=35.81 Aligned_cols=49 Identities=12% Similarity=0.106 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC
Q 012772 350 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLG 406 (456)
Q Consensus 350 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g 406 (456)
..+....+.++..+|+|++|++++.++|.. .|.-...++..+.+..+.|
T Consensus 142 y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--------d~~N~sAW~~R~~vl~~~~ 190 (320)
T PLN02789 142 YHAWSHRQWVLRTLGGWEDELEYCHQLLEE--------DVRNNSAWNQRYFVITRSP 190 (320)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--------CCCchhHHHHHHHHHHhcc
Confidence 455666677777888999999999988864 3444566777777776653
No 267
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=81.78 E-value=4.7 Score=39.91 Aligned_cols=66 Identities=14% Similarity=0.013 Sum_probs=50.8
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC-------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772 355 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH-------PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 420 (456)
Q Consensus 355 ~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~h-------p~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~ 420 (456)
.=++.|.+.|+|..|...|++++..++...+.+- -.....+.|||..+..++++.+|+..-.++|+
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 3466788899999999999999998876666321 22334678889999999999888887776665
No 268
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.75 E-value=2 Score=28.37 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=22.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Q 012772 353 REKLIKILMELEDWKEALAYCQLTIP 378 (456)
Q Consensus 353 ~~~L~~~~~~~g~~~~A~~~~~~~l~ 378 (456)
...||.+|+.+|+.+.|.+..++++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 35799999999999999999988773
No 269
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=81.66 E-value=16 Score=38.64 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=38.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012772 357 IKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 423 (456)
Q Consensus 357 ~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~ 423 (456)
..+.....++++|..++.++-. .--+...+++-+.+.+.+|+.++|+.++++|++++-
T Consensus 625 vKle~en~e~eraR~llakar~---------~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp 682 (913)
T KOG0495|consen 625 VKLEFENDELERARDLLAKARS---------ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFP 682 (913)
T ss_pred HHHhhccccHHHHHHHHHHHhc---------cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 3344455667777777666543 223455677777777888888888888888887653
No 270
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=81.66 E-value=3.1 Score=28.73 Aligned_cols=43 Identities=21% Similarity=0.191 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 012772 394 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 441 (456)
Q Consensus 394 ~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~ 441 (456)
.+|.||..+..+|+|++|..+.+.++++ -|+++....+...+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~-----eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI-----EPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH-----TTS-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh-----CCCcHHHHHHHHHHH
Confidence 4788999999999999999999988875 456655555544443
No 271
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=81.33 E-value=1.3 Score=31.20 Aligned_cols=30 Identities=17% Similarity=0.335 Sum_probs=21.3
Q ss_pred CccCcCcCCCCCCccCcCCCCcccccHHhhhhcHHHh
Q 012772 27 ISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLH 63 (456)
Q Consensus 27 ~~~C~~C~~~~~~~~C~~C~~v~yCs~~C~~~~~~~H 63 (456)
..+|-.|+++.++- -.|||++|++..++.+
T Consensus 3 HkHC~~CG~~Ip~~-------~~fCS~~C~~~~~k~q 32 (59)
T PF09889_consen 3 HKHCPVCGKPIPPD-------ESFCSPKCREEYRKRQ 32 (59)
T ss_pred CCcCCcCCCcCCcc-------hhhhCHHHHHHHHHHH
Confidence 57899999885431 2699999987654433
No 272
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=81.25 E-value=4.2 Score=36.14 Aligned_cols=47 Identities=13% Similarity=0.158 Sum_probs=40.3
Q ss_pred CCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772 345 FSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 391 (456)
Q Consensus 345 ~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~ 391 (456)
..+..++++.+|..-|..+|+++-|...|+++|.-.++..|..||.+
T Consensus 135 E~~~rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~v 181 (181)
T PF09311_consen 135 EIPARLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPDV 181 (181)
T ss_dssp TS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCC
Confidence 45567888899999999999999999999999999999999999975
No 273
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.21 E-value=13 Score=36.21 Aligned_cols=115 Identities=15% Similarity=0.112 Sum_probs=71.2
Q ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 012772 318 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 397 (456)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~ 397 (456)
+..-|+|++|+..|+-+... ++. -.+..-+|+..+..+|.|.+|.....++ +..|.--..+++
T Consensus 67 ~fhLgdY~~Al~~Y~~~~~~-------~~~-~~el~vnLAcc~FyLg~Y~eA~~~~~ka---------~k~pL~~RLlfh 129 (557)
T KOG3785|consen 67 YFHLGDYEEALNVYTFLMNK-------DDA-PAELGVNLACCKFYLGQYIEAKSIAEKA---------PKTPLCIRLLFH 129 (557)
T ss_pred HHhhccHHHHHHHHHHHhcc-------CCC-CcccchhHHHHHHHHHHHHHHHHHHhhC---------CCChHHHHHHHH
Confidence 45678999998888766431 111 1445567899999999999998876654 455555555555
Q ss_pred HHHH----------HHHcCCH----------HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhh
Q 012772 398 CGKL----------EWFLGDT----------ENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYK 450 (456)
Q Consensus 398 La~~----------~~~~g~~----------~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~~~~ 450 (456)
||-- +..+++. .=.+.+|++|+++..+.+- ++|.+..+--.++-+...+-|+
T Consensus 130 lahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~-dn~ey~alNVy~ALCyyKlDYy 201 (557)
T KOG3785|consen 130 LAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ-DNPEYIALNVYMALCYYKLDYY 201 (557)
T ss_pred HHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh-cChhhhhhHHHHHHHHHhcchh
Confidence 5421 1122221 1123456677777777654 6677776666777776555553
No 274
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=80.92 E-value=0.74 Score=32.22 Aligned_cols=12 Identities=25% Similarity=0.803 Sum_probs=9.5
Q ss_pred cccccHHhhhhc
Q 012772 48 VWYCGSNCQKLD 59 (456)
Q Consensus 48 v~yCs~~C~~~~ 59 (456)
-+|||+.|+..|
T Consensus 21 rPFCS~RCk~iD 32 (57)
T PF03884_consen 21 RPFCSERCKLID 32 (57)
T ss_dssp -SSSSHHHHHHH
T ss_pred CCcccHhhcccC
Confidence 379999999765
No 275
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=80.77 E-value=1.2 Score=46.40 Aligned_cols=38 Identities=29% Similarity=0.302 Sum_probs=30.3
Q ss_pred ccccCCCcCCCeeE--E-eC-CEEEEEEecCCCCCCcccCCh
Q 012772 220 SIINHSCLPNAVLV--F-EG-RLAVVRAVQHVPKGAEGQFDD 257 (456)
Q Consensus 220 sl~NHSC~PN~~~~--f-~~-~~~~vra~~~I~~Gee~~~~~ 257 (456)
=+.|||=.|||..- + .| .+|-+.|.|.|.+|||++|++
T Consensus 667 rFANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDY 708 (739)
T KOG1079|consen 667 RFANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDY 708 (739)
T ss_pred hhccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeee
Confidence 45799999999764 2 23 578899999999999998543
No 276
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=80.73 E-value=4 Score=28.19 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 012772 352 TREKLIKILMELEDWKEALAYCQLTIPV 379 (456)
Q Consensus 352 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~ 379 (456)
.++.||..+.++|+|++|.+++..+|.+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4677889999999999999999999864
No 277
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=80.71 E-value=14 Score=40.97 Aligned_cols=100 Identities=22% Similarity=0.104 Sum_probs=72.1
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHHHHhcCCCC
Q 012772 310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELED-WKEALAYCQLTIPVYQRVYPQFH 388 (456)
Q Consensus 310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~-~~~A~~~~~~~l~~~e~~~g~~h 388 (456)
...+.|.......+|++|++..+++++ +.|+|+. +.--|+.++..+|. .++|.++|..+.. -.
T Consensus 4 ~aLK~Ak~al~nk~YeealEqskkvLk-----~dpdNYn---A~vFLGvAl~sl~q~le~A~ehYv~AaK--------ld 67 (1238)
T KOG1127|consen 4 TALKSAKDALRNKEYEEALEQSKKVLK-----EDPDNYN---AQVFLGVALWSLGQDLEKAAEHYVLAAK--------LD 67 (1238)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHh-----cCCCcch---hhhHHHHHHHhccCCHHHHHHHHHHHHh--------cC
Confidence 344555555556789999998888875 3466644 44568888888876 9999999988774 45
Q ss_pred hHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHh
Q 012772 389 PLLGLQYYTCGKLEWF---LGDTENAIKSMTEAVEILRIT 425 (456)
Q Consensus 389 p~~~~~l~~La~~~~~---~g~~~eA~~~l~~Al~i~~~~ 425 (456)
|.-...+-.|+.+|.. .-.++++-+.|++++.+++..
T Consensus 68 pdnlLAWkGL~nLye~~~dIl~ld~~~~~yq~~~l~le~q 107 (1238)
T KOG1127|consen 68 PDNLLAWKGLGNLYERYNDILDLDRAAKCYQRAVLILENQ 107 (1238)
T ss_pred hhhhHHHHHHHHHHHccchhhhhhHhHHHHHHHHHhhhhh
Confidence 6667777777777765 345677888888887777654
No 278
>KOG4317 consensus Predicted Zn-finger protein [Function unknown]
Probab=80.70 E-value=0.61 Score=43.93 Aligned_cols=38 Identities=26% Similarity=0.711 Sum_probs=30.4
Q ss_pred CCccCcCcCCCCCCccCcCCCCcccccHHhhhhcHHHhHHhch
Q 012772 26 SISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQ 68 (456)
Q Consensus 26 ~~~~C~~C~~~~~~~~C~~C~~v~yCs~~C~~~~~~~H~~EC~ 68 (456)
....|+-|.....-+.||+|.+ .|||-.|-+ .|+.-|.
T Consensus 6 ~~~~C~ic~vq~~~YtCPRCn~-~YCsl~CYr----~h~~~Cs 43 (383)
T KOG4317|consen 6 SFLACGICGVQKREYTCPRCNL-LYCSLKCYR----NHKHSCS 43 (383)
T ss_pred ceeeccccccccccccCCCCCc-cceeeeeec----CCCccch
Confidence 4567888888866799999999 799999984 5666683
No 279
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=80.12 E-value=68 Score=32.07 Aligned_cols=106 Identities=13% Similarity=0.151 Sum_probs=67.2
Q ss_pred HhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHH--HccCHHHHHHHHHHHH----------------
Q 012772 316 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILM--ELEDWKEALAYCQLTI---------------- 377 (456)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~--~~g~~~~A~~~~~~~l---------------- 377 (456)
..+..+++|..|.++++.+.. +.+.+........+..|...|. +.-++++|.++..+.+
T Consensus 138 r~l~n~~dy~aA~~~~~~L~~---r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~~~~~~~~~~~~~~~~ 214 (380)
T TIGR02710 138 RRAINAFDYLFAHARLETLLR---RLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLPERLALYQVTSHDELE 214 (380)
T ss_pred HHHHHhcChHHHHHHHHHHHh---cccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccchhhhhhhhhhhhHHH
Confidence 345567899999998888864 3555666666777777887765 4668888888887221
Q ss_pred ---HHHHHhcCC------------CChHHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012772 378 ---PVYQRVYPQ------------FHPLLG--LQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 424 (456)
Q Consensus 378 ---~~~e~~~g~------------~hp~~~--~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~ 424 (456)
.....+.|. .+|.+. .-++.-|..-..+|+|+.|...+-+|++++..
T Consensus 215 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e~~~q 278 (380)
T TIGR02710 215 DVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALELIVQ 278 (380)
T ss_pred HHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 111122221 233322 22222244444689999999999999987654
No 280
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.91 E-value=15 Score=36.80 Aligned_cols=112 Identities=14% Similarity=0.089 Sum_probs=69.2
Q ss_pred HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHH-------HHHHcc---CHHHHHHHHHHHHH
Q 012772 309 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIK-------ILMELE---DWKEALAYCQLTIP 378 (456)
Q Consensus 309 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~-------~~~~~g---~~~~A~~~~~~~l~ 378 (456)
..+.++|..++....|++|+.++-.+.+ .|-...+.++..-++.+. .|..+. .+..|..-..++-.
T Consensus 164 lg~hekaRa~m~re~y~eAl~~LleADe----~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~k 239 (568)
T KOG2561|consen 164 LGLHEKARAAMEREMYSEALLVLLEADE----SFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARK 239 (568)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHH
Confidence 3456677777777788888876554433 333444445555555443 344433 33344444444444
Q ss_pred HHHHhcC-----------CCChHHHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012772 379 VYQRVYP-----------QFHPLLGLQYY---TCGKLEWFLGDTENAIKSMTEAVEILRI 424 (456)
Q Consensus 379 ~~e~~~g-----------~~hp~~~~~l~---~La~~~~~~g~~~eA~~~l~~Al~i~~~ 424 (456)
.+++.|| +..|.++..+. --|.+.+++|+.++|.+.|+.|..-+..
T Consensus 240 gf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~e 299 (568)
T KOG2561|consen 240 GFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLE 299 (568)
T ss_pred hhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 4555554 45688777543 2388889999999999999998876654
No 281
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=79.32 E-value=24 Score=26.35 Aligned_cols=59 Identities=19% Similarity=0.165 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHHHHHHh
Q 012772 391 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT--HGTNSPFMKELILKLEEAQAEASY 449 (456)
Q Consensus 391 ~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~--~G~~h~~~~~~~~~l~~~~~e~~~ 449 (456)
.|..+...|.-+-..|++++|+.+|++|.+.+... .-||++.-.....++.+-...++.
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~ 65 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEV 65 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Confidence 45566666777778999999999999999988775 334555544445555555444433
No 282
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=79.04 E-value=21 Score=26.95 Aligned_cols=60 Identities=13% Similarity=0.078 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCc---------hHHHHHHHHHHHHHHHHhh
Q 012772 391 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP---------FMKELILKLEEAQAEASYK 450 (456)
Q Consensus 391 ~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~---------~~~~~~~~l~~~~~e~~~~ 450 (456)
.|...-+.|.-+-..|+.++|+.+|+++++++.....-..| ....+..+|.....++.++
T Consensus 7 ~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~R 75 (79)
T cd02679 7 QAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTR 75 (79)
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555556788999999999999999988765552 2245566666666666664
No 283
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.01 E-value=9.2 Score=36.46 Aligned_cols=64 Identities=19% Similarity=0.281 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772 349 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 420 (456)
Q Consensus 349 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~ 420 (456)
.+....+.+-+..+.|++++|++-++.++. +|++.|.++ +++|..+...|+++.|+++.-+.++
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlq-----vsGyqpllA---YniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQ-----VSGYQPLLA---YNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHh-----hcCCCchhH---HHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 345567788888899999999999998884 678888876 5789999999999999999877655
No 284
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.97 E-value=6.4 Score=38.43 Aligned_cols=59 Identities=14% Similarity=0.051 Sum_probs=51.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Q 012772 354 EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAI 412 (456)
Q Consensus 354 ~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~ 412 (456)
-.+++-...+++++.|...+..+..+...+||..|-..+..+|..|+.++.+++.+.++
T Consensus 45 v~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 45 VQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred HHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566677889999999999999999999999999999999999999999887766543
No 285
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=78.78 E-value=76 Score=34.05 Aligned_cols=100 Identities=11% Similarity=0.039 Sum_probs=70.3
Q ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 012772 320 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG 399 (456)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La 399 (456)
+..++++|+..+++...+.++ +...-....+..-++.++.+.+... |..++.+.+..++. +|..+......+.+..
T Consensus 72 eT~n~~~Ae~~L~k~~~l~~~--~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~-~~~~~w~~~frll~~~ 147 (608)
T PF10345_consen 72 ETENLDLAETYLEKAILLCER--HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET-YGHSAWYYAFRLLKIQ 147 (608)
T ss_pred HcCCHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc-cCchhHHHHHHHHHHH
Confidence 456889999988888766654 3323334666667788888877766 99999999998886 6666666666555444
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHH
Q 012772 400 KLEWFLGDTENAIKSMTEAVEILRI 424 (456)
Q Consensus 400 ~~~~~~g~~~eA~~~l~~Al~i~~~ 424 (456)
..... +++..|...+++...+-..
T Consensus 148 l~~~~-~d~~~Al~~L~~~~~~a~~ 171 (608)
T PF10345_consen 148 LALQH-KDYNAALENLQSIAQLANQ 171 (608)
T ss_pred HHHhc-ccHHHHHHHHHHHHHHhhh
Confidence 43333 8899999998887776553
No 286
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=78.65 E-value=3.3 Score=24.14 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Q 012772 352 TREKLIKILMELEDWKEALAYCQLTIP 378 (456)
Q Consensus 352 ~~~~L~~~~~~~g~~~~A~~~~~~~l~ 378 (456)
+++.+...|.+.|++++|.+.+++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 467889999999999999999988753
No 287
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=78.49 E-value=11 Score=36.74 Aligned_cols=45 Identities=20% Similarity=0.283 Sum_probs=34.2
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 012772 355 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK 400 (456)
Q Consensus 355 ~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~ 400 (456)
.-++-|..+|.|++|++.|.+.++++- .-|-.|..+|..|+.+-+
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P-~NpV~~~NRA~AYlk~K~ 146 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYP-HNPVYHINRALAYLKQKS 146 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCC-CCccchhhHHHHHHHHHH
Confidence 456779999999999999999987543 223467788888887744
No 288
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=78.28 E-value=27 Score=29.36 Aligned_cols=86 Identities=17% Similarity=0.127 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 012772 349 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL-QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 427 (456)
Q Consensus 349 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~-~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G 427 (456)
..++..+++.++....+- +--++-+.+++.+++..||..-. -+|-||.-+..+++|++|++++..-+++ -
T Consensus 31 s~~s~f~lAwaLV~S~~~----~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~-----e 101 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDT----EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET-----E 101 (149)
T ss_pred hHHHHHHHHHHHHcccch----HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh-----C
Confidence 456667788777766543 22345566677788777877655 7788999999999999999998766553 4
Q ss_pred CCCchHHHHHHHHHHH
Q 012772 428 TNSPFMKELILKLEEA 443 (456)
Q Consensus 428 ~~h~~~~~~~~~l~~~ 443 (456)
|+++....+...+.+.
T Consensus 102 ~~n~Qa~~Lk~~ied~ 117 (149)
T KOG3364|consen 102 PNNRQALELKETIEDK 117 (149)
T ss_pred CCcHHHHHHHHHHHHH
Confidence 5666666666655543
No 289
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=77.97 E-value=24 Score=35.14 Aligned_cols=76 Identities=13% Similarity=0.114 Sum_probs=62.9
Q ss_pred HhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 012772 339 KKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF--HPLLGLQYYTCGKLEWFLGDTENAIKSMT 416 (456)
Q Consensus 339 ~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~--hp~~~~~l~~La~~~~~~g~~~eA~~~l~ 416 (456)
...|+-+....+-+.+.|...|...+.|++|..+-.+ ..||.. +-.-|..+|-+|++-.-+++|..|.+++.
T Consensus 198 tAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK------~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~ 271 (493)
T KOG2581|consen 198 TATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSK------SVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFL 271 (493)
T ss_pred HhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhc------ccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHH
Confidence 4567767777777888899999999999999888444 478854 45888999999999999999999999998
Q ss_pred HHHH
Q 012772 417 EAVE 420 (456)
Q Consensus 417 ~Al~ 420 (456)
+|+.
T Consensus 272 qa~r 275 (493)
T KOG2581|consen 272 QALR 275 (493)
T ss_pred HHHH
Confidence 8875
No 290
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=77.91 E-value=2.3 Score=44.03 Aligned_cols=82 Identities=18% Similarity=0.164 Sum_probs=53.5
Q ss_pred HHHHHHHhhHhccccccccC-----CCCcceeeeccccccccCCCcCCCeeEE-eCCEEEEEEecCCCCCCcc--cCChh
Q 012772 187 NEIAENFSKLACNAHTICNS-----ELRPLGTGLYPVISIINHSCLPNAVLVF-EGRLAVVRAVQHVPKGAEG--QFDDI 258 (456)
Q Consensus 187 ~~l~~~~~~~~~N~~~i~~~-----~~~~~g~glyp~~sl~NHSC~PN~~~~f-~~~~~~vra~~~I~~Gee~--~~~~~ 258 (456)
+...-.++.+.+.+|.+... ....--.++.|..=++||+|.+...-.+ .+..+.+++.++|.+|+|+ +|.+.
T Consensus 200 ~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D~~NH~~~~~~~~~~~~d~~~~l~~~~~v~~geevfi~YG~~ 279 (472)
T KOG1337|consen 200 SAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLIDLLNHSPEVIKAGYNQEDEAVELVAERDVSAGEEVFINYGPK 279 (472)
T ss_pred HHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHHhhccCchhccccccCCCCcEEEEEeeeecCCCeEEEecCCC
Confidence 33444555556655555432 2233446899999999999999443333 3458999999999999996 67764
Q ss_pred hHHHhh--CCcc
Q 012772 259 QESAIL--EGYR 268 (456)
Q Consensus 259 r~~~l~--~~f~ 268 (456)
--..|+ .||.
T Consensus 280 ~N~eLL~~YGFv 291 (472)
T KOG1337|consen 280 SNAELLLHYGFV 291 (472)
T ss_pred chHHHHHhcCCC
Confidence 333443 4663
No 291
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=77.23 E-value=21 Score=34.03 Aligned_cols=72 Identities=18% Similarity=0.074 Sum_probs=58.0
Q ss_pred HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772 309 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 388 (456)
Q Consensus 309 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~h 388 (456)
..+...|..+...|.+.+|+++.++++.+ |+..-.....|+.++..+||=-.|..++.+.-...++.+|-+-
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~v 351 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDV 351 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCc
Confidence 34455667778889999999999888642 4455566778889999999999999999999999999998543
No 292
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=76.85 E-value=11 Score=37.80 Aligned_cols=73 Identities=18% Similarity=0.193 Sum_probs=56.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 012772 354 EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH 426 (456)
Q Consensus 354 ~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~ 426 (456)
-.|..++.-+|||..|++....+---.+.+|...-+-....+|.+|-.|+.+++|.+|.+.+...+--+.++-
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k 198 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTK 198 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556677789999999998765433344455555555566789999999999999999999999988877764
No 293
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=76.71 E-value=66 Score=30.10 Aligned_cols=106 Identities=16% Similarity=0.029 Sum_probs=65.6
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHHHHHhcC-
Q 012772 312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-----EDWKEALAYCQLTIPVYQRVYP- 385 (456)
Q Consensus 312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~-----g~~~~A~~~~~~~l~~~e~~~g- 385 (456)
+..+-.....+++++|+...++.+. ++|+|+..-.+.+..+..+... .|...+.+-....-.+.. -||
T Consensus 75 l~l~yA~Yk~~~y~~A~~~~drFi~-----lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~-ryPn 148 (254)
T COG4105 75 LDLAYAYYKNGEYDLALAYIDRFIR-----LYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQ-RYPN 148 (254)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH-----hCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHH-HCCC
Confidence 4445556677899999887777654 6899999888888777766543 243334333333333333 344
Q ss_pred -CCChH-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012772 386 -QFHPL-----------LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 423 (456)
Q Consensus 386 -~~hp~-----------~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~ 423 (456)
++-|+ ++.+=+.+|+.|...|.+..|..-+++.++-..
T Consensus 149 S~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~ 198 (254)
T COG4105 149 SRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYP 198 (254)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccc
Confidence 22222 233334447778888888888877777666543
No 294
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=76.02 E-value=21 Score=38.20 Aligned_cols=80 Identities=19% Similarity=0.053 Sum_probs=45.1
Q ss_pred HHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHH------HHHHHHHH---------hcCCCChHHHH-HHHHHHH
Q 012772 337 LQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQ------LTIPVYQR---------VYPQFHPLLGL-QYYTCGK 400 (456)
Q Consensus 337 ~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~------~~l~~~e~---------~~g~~hp~~~~-~l~~La~ 400 (456)
+.++..||.. +..++..-+.-.-+.|+|.+|.++|- +++.+|.+ +.+..||.... +...+|+
T Consensus 813 la~e~~~~e~--t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~ 890 (1636)
T KOG3616|consen 813 LAEECHGPEA--TISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAK 890 (1636)
T ss_pred HHHHhcCchh--HHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHH
Confidence 3344445543 33444444455556677776666542 44444432 44556666544 5666777
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 012772 401 LEWFLGDTENAIKSMTEA 418 (456)
Q Consensus 401 ~~~~~g~~~eA~~~l~~A 418 (456)
-+-..|++.+|+..|-+|
T Consensus 891 e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 891 ELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred HHHhccChhHHHHHHHhh
Confidence 777777777777666544
No 295
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=75.85 E-value=87 Score=34.53 Aligned_cols=107 Identities=13% Similarity=0.041 Sum_probs=74.6
Q ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCC-ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q 012772 318 LTSCGNHQEVVSTYKMIEKLQKKLYHPFS-VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY 396 (456)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~l~p~h-~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~ 396 (456)
...+|+++.|+++.+.++. .++++. ...+.+...++.+..-.|++++|+.+.+++..+.++ |..+|-. .+...
T Consensus 468 al~~~~~e~a~~lar~al~----~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~-~~~~~l~-~~~~~ 541 (894)
T COG2909 468 ALNRGDPEEAEDLARLALV----QLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQ-HDVYHLA-LWSLL 541 (894)
T ss_pred HHhcCCHHHHHHHHHHHHH----hcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHH-cccHHHH-HHHHH
Confidence 4567889999888777764 244443 345777788999999999999999999999887664 4444443 56677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCch
Q 012772 397 TCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF 432 (456)
Q Consensus 397 ~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~ 432 (456)
.-+.++..+| +-+.....++.......++++-|.
T Consensus 542 ~~s~il~~qG--q~~~a~~~~~~~~~~~q~l~q~~~ 575 (894)
T COG2909 542 QQSEILEAQG--QVARAEQEKAFNLIREQHLEQKPR 575 (894)
T ss_pred HHHHHHHHhh--HHHHHHHHHHHHHHHHHHhhhccc
Confidence 7788888999 333444445555555555555554
No 296
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=75.75 E-value=11 Score=35.16 Aligned_cols=55 Identities=11% Similarity=0.073 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHH
Q 012772 325 QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME-LEDWKEALAYCQLTIPV 379 (456)
Q Consensus 325 ~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~-~g~~~~A~~~~~~~l~~ 379 (456)
++|.+.|+.+..+..+.++|.||..+.+.-+.+..|.+ +++-++|.++.+++.+-
T Consensus 145 ~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~ 200 (244)
T smart00101 145 ENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 200 (244)
T ss_pred HHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46777888888887778999999999988888877665 59999999998887764
No 297
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=75.75 E-value=2 Score=28.56 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=20.3
Q ss_pred cCCCCCCCcccCCCCCCeeeccCCCcC
Q 012772 270 KDDGCSGFLLRDSDDKGFTCQQCGLVR 296 (456)
Q Consensus 270 ~C~~C~~~~~~~~~~~~~~C~~C~~~~ 296 (456)
.|+.|...+..++....+.|+.||..+
T Consensus 5 ~C~~CG~~~~~~~~~~~~~Cp~CG~~~ 31 (46)
T PRK00398 5 KCARCGREVELDEYGTGVRCPYCGYRI 31 (46)
T ss_pred ECCCCCCEEEECCCCCceECCCCCCeE
Confidence 367999877666555589999999754
No 298
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.71 E-value=22 Score=33.53 Aligned_cols=84 Identities=13% Similarity=0.062 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH----HHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 012772 351 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG----KLEWFLGDTENAIKSMTEAVEILRITH 426 (456)
Q Consensus 351 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La----~~~~~~g~~~eA~~~l~~Al~i~~~~~ 426 (456)
.+-..|+.+|...|+|..-.+..+++-...+.--|.+....|.++.++- +.|..+.+...-..+|++|+.|-...
T Consensus 146 KTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAI- 224 (440)
T KOG1464|consen 146 KTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAI- 224 (440)
T ss_pred eccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccC-
Confidence 3345677778888888888888888888888888999988888888774 34556677777777899999988877
Q ss_pred CCCCchHHHHH
Q 012772 427 GTNSPFMKELI 437 (456)
Q Consensus 427 G~~h~~~~~~~ 437 (456)
.||.+-.+.
T Consensus 225 --PHPlImGvI 233 (440)
T KOG1464|consen 225 --PHPLIMGVI 233 (440)
T ss_pred --CchHHHhHH
Confidence 788876655
No 299
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.51 E-value=4.1 Score=40.03 Aligned_cols=72 Identities=22% Similarity=0.288 Sum_probs=55.9
Q ss_pred CCCHHHHHHHHhhHhccccccc----------cCCCCcceeeeccccccccCCCc-CCCeeEEeCCEEEEEEecCCCCCC
Q 012772 183 EISINEIAENFSKLACNAHTIC----------NSELRPLGTGLYPVISIINHSCL-PNAVLVFEGRLAVVRAVQHVPKGA 251 (456)
Q Consensus 183 ~~~~~~l~~~~~~~~~N~~~i~----------~~~~~~~g~glyp~~sl~NHSC~-PN~~~~f~~~~~~vra~~~I~~Ge 251 (456)
.++.+..+.+.+.+..=+|-+. +.+....|-..-|.+-++||.=. -|+...++++.+.+.|.|+|++|+
T Consensus 173 ~~slEdF~y~~Al~laysfdve~~~s~~~~eee~e~e~ngk~m~p~ad~lNhd~~k~nanl~y~~NcL~mva~r~iekgd 252 (466)
T KOG1338|consen 173 RPSLEDFMYAYALGLAYSFDVEFLLSLDNLEEESEIECNGKLMTPIADFLNHDGLKANANLRYEDNCLEMVADRNIEKGD 252 (466)
T ss_pred ccCHHHHHHHHHHHHHHheeeehhcchhhhhhhhccccCcccccchhhhhccchhhcccceeccCcceeeeecCCCCCcc
Confidence 4666777766666555555442 12356789999999999999876 688888889999999999999999
Q ss_pred ccc
Q 012772 252 EGQ 254 (456)
Q Consensus 252 e~~ 254 (456)
|+.
T Consensus 253 ev~ 255 (466)
T KOG1338|consen 253 EVD 255 (466)
T ss_pred ccc
Confidence 975
No 300
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=75.32 E-value=19 Score=27.12 Aligned_cols=62 Identities=11% Similarity=-0.011 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 012772 307 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV 379 (456)
Q Consensus 307 ~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~ 379 (456)
.+...++.|..+.+.|+.++|+.+|++.+.....-+.-..+ .......|+.|..+-+++..-
T Consensus 7 ~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~-----------~~~~~~~w~~ar~~~~Km~~~ 68 (79)
T cd02679 7 QAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVP-----------SAGVGSQWERARRLQQKMKTN 68 (79)
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCC-----------cccccHHHHHHHHHHHHHHHH
Confidence 34455667777778899999999999998776554332222 123345788888877766543
No 301
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.99 E-value=12 Score=38.51 Aligned_cols=65 Identities=20% Similarity=0.136 Sum_probs=54.4
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHH
Q 012772 356 LIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGD-TENAIKSMTEAVEI 421 (456)
Q Consensus 356 L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~-~~eA~~~l~~Al~i 421 (456)
++.++..+|+-+.|..+++..++- +...-.++=.+..++|+||.+++.+|. ..+|.++|.+|.+-
T Consensus 455 ~g~~lR~Lg~~~~a~~~f~i~~~~-e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~ 520 (546)
T KOG3783|consen 455 KGVILRNLGDSEVAPKCFKIQVEK-ESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREY 520 (546)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH-HHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhh
Confidence 455677889999999998877765 445557888888999999999999998 99999999999764
No 302
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=74.71 E-value=26 Score=26.25 Aligned_cols=57 Identities=18% Similarity=0.074 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-CCCCchHHHH-HHHHHHHHHHH
Q 012772 391 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH-GTNSPFMKEL-ILKLEEAQAEA 447 (456)
Q Consensus 391 ~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~-G~~h~~~~~~-~~~l~~~~~e~ 447 (456)
.|..+..-|.-.-..|++++|..+|.+|++.+.... +...+...++ ..++.+-...+
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RA 63 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRA 63 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHH
Confidence 456666677777789999999999999999888743 3334444443 45554444333
No 303
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=74.12 E-value=34 Score=25.47 Aligned_cols=59 Identities=14% Similarity=0.015 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-CCCCchHHHHH-HHHHHHHHHHH
Q 012772 390 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH-GTNSPFMKELI-LKLEEAQAEAS 448 (456)
Q Consensus 390 ~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~-G~~h~~~~~~~-~~l~~~~~e~~ 448 (456)
..|..+..-|.-.-..|++++|..+|.+|++.+.... +...|...+.+ .++.+....++
T Consensus 4 ~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k~~eyl~RAE 64 (75)
T cd02684 4 EKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQKVLQYVSRAE 64 (75)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777788999999999999999888854 55666665544 44444443333
No 304
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=74.05 E-value=25 Score=25.41 Aligned_cols=39 Identities=18% Similarity=0.115 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 012772 391 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN 429 (456)
Q Consensus 391 ~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~ 429 (456)
.|..+.+.|.-.-+.|++++|..+|.+|++.+......+
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~ 42 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLMQALKSE 42 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccC
Confidence 466677778778889999999999999999988875544
No 305
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=73.71 E-value=30 Score=25.87 Aligned_cols=32 Identities=19% Similarity=0.127 Sum_probs=25.7
Q ss_pred HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHh
Q 012772 309 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKK 340 (456)
Q Consensus 309 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (456)
-.+...|......|+|++|+..|+.+++....
T Consensus 7 i~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 7 VQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 34556677777889999999999999887665
No 306
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=73.70 E-value=52 Score=28.47 Aligned_cols=59 Identities=12% Similarity=0.055 Sum_probs=40.1
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 012772 310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLT 376 (456)
Q Consensus 310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~ 376 (456)
.+++.+......++.+++..++..+ ++|.|.++. ....-+.+++..|+|.+|+.+.+.+
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~AL-----rvLRP~~~e---~~~~~~~l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDAL-----RVLRPEFPE---LDLFDGWLHIVRGDWDDALRLLREL 70 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHH-----HHhCCCchH---HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3444444445567778887765544 467776654 3345667888999999999998875
No 307
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=73.57 E-value=18 Score=35.81 Aligned_cols=67 Identities=22% Similarity=0.174 Sum_probs=51.7
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH---------HHHhcCC--------------CChHHHHHHHHHHHHHHHcCCHHH
Q 012772 354 EKLIKILMELEDWKEALAYCQLTIPV---------YQRVYPQ--------------FHPLLGLQYYTCGKLEWFLGDTEN 410 (456)
Q Consensus 354 ~~L~~~~~~~g~~~~A~~~~~~~l~~---------~e~~~g~--------------~hp~~~~~l~~La~~~~~~g~~~e 410 (456)
..++.-+++.|+.++|.+..+++|+- +..+-|. .||.-...++.||.++...+.+.+
T Consensus 267 ~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~k 346 (400)
T COG3071 267 VAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGK 346 (400)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHH
Confidence 45667788889999998887766542 2222221 377888999999999999999999
Q ss_pred HHHHHHHHHH
Q 012772 411 AIKSMTEAVE 420 (456)
Q Consensus 411 A~~~l~~Al~ 420 (456)
|.++|+.|+.
T Consensus 347 A~~~leaAl~ 356 (400)
T COG3071 347 ASEALEAALK 356 (400)
T ss_pred HHHHHHHHHh
Confidence 9999997775
No 308
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.52 E-value=17 Score=34.73 Aligned_cols=79 Identities=11% Similarity=-0.038 Sum_probs=58.2
Q ss_pred CChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 012772 322 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKL 401 (456)
Q Consensus 322 g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~ 401 (456)
.+|++|+++.. ..|..++.....+..|+..|...++|++|.+.+.++ +..||..+..-+--|+.
T Consensus 24 ~ry~DaI~~l~--------s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL--------~ql~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 24 ARYADAIQLLG--------SELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQL--------GQLHPELEQYRLYQAQS 87 (459)
T ss_pred hhHHHHHHHHH--------HHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhChHHHHHHHHHHHH
Confidence 46677766432 234556666677788999999999999999998764 56788888777777777
Q ss_pred HHHcCCHHHHHHHHH
Q 012772 402 EWFLGDTENAIKSMT 416 (456)
Q Consensus 402 ~~~~g~~~eA~~~l~ 416 (456)
+.+.+.+.+|+..+.
T Consensus 88 LY~A~i~ADALrV~~ 102 (459)
T KOG4340|consen 88 LYKACIYADALRVAF 102 (459)
T ss_pred HHHhcccHHHHHHHH
Confidence 778888877765543
No 309
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=73.45 E-value=30 Score=29.84 Aligned_cols=90 Identities=20% Similarity=0.216 Sum_probs=68.2
Q ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 012772 320 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG 399 (456)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La 399 (456)
..+++++++..+.+++...... .......++..+...+++++|..+..+++..... ....+..++
T Consensus 179 ~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~~ 243 (291)
T COG0457 179 ALGRYEEALELLEKALKLNPDD-------DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD--------NAEALYNLA 243 (291)
T ss_pred HhcCHHHHHHHHHHHHhhCccc-------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc--------cHHHHhhHH
Confidence 4567888888777776543221 4566778888999999999999999988875443 556677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHH
Q 012772 400 KLEWFLGDTENAIKSMTEAVEILRI 424 (456)
Q Consensus 400 ~~~~~~g~~~eA~~~l~~Al~i~~~ 424 (456)
..+...|.++++...+.+++.....
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 244 LLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 7777778899999999988887665
No 310
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=73.23 E-value=1.6 Score=36.30 Aligned_cols=32 Identities=25% Similarity=0.540 Sum_probs=27.1
Q ss_pred CCCCccCcCcCCCCCCccCcCCCCcccccHHhhh
Q 012772 24 SSSISRCDGCFASSNLKKCSACQVVWYCGSNCQK 57 (456)
Q Consensus 24 ~~~~~~C~~C~~~~~~~~C~~C~~v~yCs~~C~~ 57 (456)
......|+-|. -.+.+.|..|+- .|||..|..
T Consensus 115 KP~r~fCaVCG-~~S~ysC~~CG~-kyCsv~C~~ 146 (156)
T KOG3362|consen 115 KPLRKFCAVCG-YDSKYSCVNCGT-KYCSVRCLK 146 (156)
T ss_pred CCcchhhhhcC-CCchhHHHhcCC-ceeechhhh
Confidence 44678899999 447899999999 799999985
No 311
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=73.14 E-value=8.5 Score=39.14 Aligned_cols=106 Identities=16% Similarity=0.182 Sum_probs=69.8
Q ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHH--HHHHHHHHHHHccCHHHHHHHHHHHHH-HHHHhcCCCCh-----
Q 012772 318 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQ--TREKLIKILMELEDWKEALAYCQLTIP-VYQRVYPQFHP----- 389 (456)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~--~~~~L~~~~~~~g~~~~A~~~~~~~l~-~~e~~~g~~hp----- 389 (456)
.+..|++..|.+++-..- +....=|.-.+.+.. ..++|+-+...+|.|.-+..+++++|. ....+--+..|
T Consensus 250 eY~~gn~~kA~KlL~~sn-i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSN-IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHhcchHHHHHHHHhcc-cccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 344588888877543321 111111111222222 236888889999999999999999996 33322212222
Q ss_pred ----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012772 390 ----LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 424 (456)
Q Consensus 390 ----~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~ 424 (456)
..-..+|+.|.+|++.|+.-+|-..+.+|..++..
T Consensus 329 ls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~ 367 (696)
T KOG2471|consen 329 LSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR 367 (696)
T ss_pred hhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 22357899999999999999999999999998875
No 312
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=73.01 E-value=96 Score=30.30 Aligned_cols=93 Identities=14% Similarity=0.082 Sum_probs=59.2
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCcc-HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH
Q 012772 312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN-LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 390 (456)
Q Consensus 312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~-~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~ 390 (456)
-++...++...+|..|+..|-..++... + +++ -+.++.|=+.+-..+|+|..|+.=|.+++. ..|.
T Consensus 85 KeeGN~~fK~Kryk~A~~~Yt~Glk~kc----~-D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~--------~~P~ 151 (390)
T KOG0551|consen 85 KEEGNEYFKEKRYKDAVESYTEGLKKKC----A-DPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK--------LKPT 151 (390)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHhhcC----C-CccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--------cCcc
Confidence 3444445555678888888776654321 2 333 355666777777888999999999999884 3344
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 012772 391 LGLQYYTCGKLEWFLGDTENAIKSMTE 417 (456)
Q Consensus 391 ~~~~l~~La~~~~~~g~~~eA~~~l~~ 417 (456)
..-.++.=|+.+..+.++++|..+.++
T Consensus 152 h~Ka~~R~Akc~~eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 152 HLKAYIRGAKCLLELERFAEAVNWCEE 178 (390)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhh
Confidence 445555666666666666555555443
No 313
>PF14949 ARF7EP_C: ARF7 effector protein C-terminus
Probab=72.96 E-value=2.2 Score=33.81 Aligned_cols=26 Identities=23% Similarity=0.709 Sum_probs=19.2
Q ss_pred CccCcCCCCcccccHHhhhh-cHHHhHH
Q 012772 39 LKKCSACQVVWYCGSNCQKL-DWKLHRL 65 (456)
Q Consensus 39 ~~~C~~C~~v~yCs~~C~~~-~~~~H~~ 65 (456)
..||+.|+. .-|+.+|+.. .|-|-.+
T Consensus 74 ~~PC~~C~S-~KCG~~CR~nRkw~ye~i 100 (103)
T PF14949_consen 74 HYPCPKCGS-RKCGPECRCNRKWVYESI 100 (103)
T ss_pred cccCCCCCC-CccChhhCcCCceeeeee
Confidence 378999999 6999999754 3544333
No 314
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=72.70 E-value=68 Score=28.39 Aligned_cols=58 Identities=16% Similarity=0.042 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHcc----CHHHHHHHHHHHHHHHHHh
Q 012772 325 QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE----DWKEALAYCQLTIPVYQRV 383 (456)
Q Consensus 325 ~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g----~~~~A~~~~~~~l~~~e~~ 383 (456)
.++.++++.++...+..+. -+|...+++.+++.+|..++ +-.+|.+++.++..-+++.
T Consensus 45 ~es~~miedAisK~eeAL~-I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkA 106 (186)
T PF06552_consen 45 PESKKMIEDAISKFEEALK-INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKA 106 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHH-H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH
Confidence 3455555555555444321 25556677888888887764 5557777777777666643
No 315
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=72.26 E-value=50 Score=27.23 Aligned_cols=79 Identities=11% Similarity=0.039 Sum_probs=58.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC-------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 012772 354 EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH-------PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH 426 (456)
Q Consensus 354 ~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~h-------p~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~ 426 (456)
..+|....+.+++-.++-+|++++.+.+..--... -.......+||..+..+|+-+=.++||+-|-+-... +
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt-L 83 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT-L 83 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH-h
Confidence 45677788889999999999999999888732222 122346778999999999999999999987664433 3
Q ss_pred CCCCchH
Q 012772 427 GTNSPFM 433 (456)
Q Consensus 427 G~~h~~~ 433 (456)
=|+.|.+
T Consensus 84 iPQCp~~ 90 (140)
T PF10952_consen 84 IPQCPNT 90 (140)
T ss_pred ccCCCCc
Confidence 4455544
No 316
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=72.22 E-value=4.6 Score=40.84 Aligned_cols=92 Identities=14% Similarity=0.130 Sum_probs=68.0
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772 313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 392 (456)
Q Consensus 313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~ 392 (456)
.+|..+.....|+.|+.+|.++++ +.|+...... +=+.++.+.++|..|+.=+.++++ ..|...
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~-----ldpnca~~~a---nRa~a~lK~e~~~~Al~Da~kaie--------~dP~~~ 72 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIE-----LDPNCAIYFA---NRALAHLKVESFGGALHDALKAIE--------LDPTYI 72 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHh-----cCCcceeeec---hhhhhheeechhhhHHHHHHhhhh--------cCchhh
Confidence 344455556789999999998876 4555544333 334778899999999998888875 348888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772 393 LQYYTCGKLEWFLGDTENAIKSMTEAVE 420 (456)
Q Consensus 393 ~~l~~La~~~~~~g~~~eA~~~l~~Al~ 420 (456)
..|+.=|.+...++++.+|..-|++...
T Consensus 73 K~Y~rrg~a~m~l~~~~~A~~~l~~~~~ 100 (476)
T KOG0376|consen 73 KAYVRRGTAVMALGEFKKALLDLEKVKK 100 (476)
T ss_pred heeeeccHHHHhHHHHHHHHHHHHHhhh
Confidence 8888888888888888888877776554
No 317
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=72.08 E-value=2.3 Score=44.98 Aligned_cols=27 Identities=26% Similarity=0.865 Sum_probs=21.3
Q ss_pred CccCcCC---CC----cccccHHhhhhcHHHhHH
Q 012772 39 LKKCSAC---QV----VWYCGSNCQKLDWKLHRL 65 (456)
Q Consensus 39 ~~~C~~C---~~----v~yCs~~C~~~~~~~H~~ 65 (456)
...|+.| +. ..|||.+|.+.+|+.||.
T Consensus 74 ~lqCp~C~k~~~~~~~s~fCsq~CFk~~w~~Hk~ 107 (606)
T PLN03144 74 TLQCVGCVKAKLPVSKSYHCSPKCFSDAWRHHRV 107 (606)
T ss_pred cccCccchhcCCCcCcceeeCHHHHHHHHHHHHH
Confidence 4678887 22 579999999999998753
No 318
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=71.98 E-value=7.7 Score=23.00 Aligned_cols=27 Identities=26% Similarity=0.198 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Q 012772 352 TREKLIKILMELEDWKEALAYCQLTIP 378 (456)
Q Consensus 352 ~~~~L~~~~~~~g~~~~A~~~~~~~l~ 378 (456)
+++.+...|.+.|++++|.+++.++..
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 457788999999999999999988753
No 319
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=71.86 E-value=31 Score=31.11 Aligned_cols=64 Identities=8% Similarity=-0.049 Sum_probs=48.7
Q ss_pred CCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHH
Q 012772 343 HPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENA 411 (456)
Q Consensus 343 ~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA 411 (456)
|..-.....+...||..|.+ -+-++|+.++.++|+. +++++..-...+..||.++..+|+++.|
T Consensus 134 ~~~~l~t~elq~aLAtyY~k-rD~~Kt~~ll~~~L~l----~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 134 GTPELETAELQYALATYYTK-RDPEKTIQLLLRALEL----SNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCCCCCCHHHHHHHHHHHHc-cCHHHHHHHHHHHHHh----cCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44455677888888888874 4778999999999875 4455333356788899999999999887
No 320
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=71.48 E-value=2.8 Score=25.46 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=15.4
Q ss_pred CCCCCCCcccCCCCCCeeeccCCC
Q 012772 271 DDGCSGFLLRDSDDKGFTCQQCGL 294 (456)
Q Consensus 271 C~~C~~~~~~~~~~~~~~C~~C~~ 294 (456)
|.+|.++..+......-.|+.|+.
T Consensus 6 C~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 6 CGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp -TTT--BEEE-SSSS-EEESSSS-
T ss_pred cCcCCccccCCCCcCEeECCCCcC
Confidence 789999888777777778999986
No 321
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=71.46 E-value=57 Score=26.93 Aligned_cols=72 Identities=15% Similarity=0.135 Sum_probs=51.7
Q ss_pred HHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccH-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 012772 315 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNL-------MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ 386 (456)
Q Consensus 315 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~-------~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~ 386 (456)
|+.....+++-.++-.|++++.+.+...-.+...+ +-.-.+||..+..+|+-+-.++|.+-+-+-...+.|.
T Consensus 8 Ad~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltLiPQ 86 (140)
T PF10952_consen 8 ADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTLIPQ 86 (140)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHhccC
Confidence 44445567888888888888888776643333222 2234789999999999999999998877766666663
No 322
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=70.98 E-value=52 Score=31.40 Aligned_cols=76 Identities=12% Similarity=0.060 Sum_probs=57.1
Q ss_pred HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 012772 308 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 387 (456)
Q Consensus 308 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~ 387 (456)
+..+.+.+..+...|+++.+++.+++++. . |++-=.++..|+.+|...|+...|+..|+++-.....-+|..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~-----~---dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~ 224 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIE-----L---DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGID 224 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh-----c---CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCC
Confidence 45556677777888899988887777754 2 444456677899999999999999999999988766667744
Q ss_pred ChHH
Q 012772 388 HPLL 391 (456)
Q Consensus 388 hp~~ 391 (456)
=...
T Consensus 225 P~~~ 228 (280)
T COG3629 225 PAPE 228 (280)
T ss_pred ccHH
Confidence 3333
No 323
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=70.63 E-value=3.3 Score=26.78 Aligned_cols=37 Identities=24% Similarity=0.251 Sum_probs=24.5
Q ss_pred cCCCCCCCcccCC--CCCCeeeccCCC-cCCHHHHHHHHH
Q 012772 270 KDDGCSGFLLRDS--DDKGFTCQQCGL-VRSKEEIKKIAS 306 (456)
Q Consensus 270 ~C~~C~~~~~~~~--~~~~~~C~~C~~-~~~~~~~~~~~~ 306 (456)
.|++|...+.+.. +.....|++|+. .++..++.++.+
T Consensus 1 ~CP~C~~~l~~~~~~~~~id~C~~C~G~W~d~~el~~~~e 40 (41)
T PF13453_consen 1 KCPRCGTELEPVRLGDVEIDVCPSCGGIWFDAGELEKLLE 40 (41)
T ss_pred CcCCCCcccceEEECCEEEEECCCCCeEEccHHHHHHHHh
Confidence 4889987654332 234567999975 678777776543
No 324
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=70.44 E-value=46 Score=31.72 Aligned_cols=80 Identities=14% Similarity=0.114 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 012772 350 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN 429 (456)
Q Consensus 350 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~ 429 (456)
..++..++..+...|+++.+....++.+. .||..=-.+..|=..|...|+...|+..|++....+....|.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~--------~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~ 224 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIE--------LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGID 224 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh--------cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCC
Confidence 56778899999999999999999888874 5666666677777888899999999999999999999999999
Q ss_pred CchHHHHH
Q 012772 430 SPFMKELI 437 (456)
Q Consensus 430 h~~~~~~~ 437 (456)
.+.....+
T Consensus 225 P~~~~~~~ 232 (280)
T COG3629 225 PAPELRAL 232 (280)
T ss_pred ccHHHHHH
Confidence 87665433
No 325
>PF12854 PPR_1: PPR repeat
Probab=69.79 E-value=9 Score=23.47 Aligned_cols=27 Identities=19% Similarity=0.081 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 012772 350 MQTREKLIKILMELEDWKEALAYCQLT 376 (456)
Q Consensus 350 ~~~~~~L~~~~~~~g~~~~A~~~~~~~ 376 (456)
..+++.|...|.+.|++++|.++..++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 356788999999999999999998753
No 326
>PF13041 PPR_2: PPR repeat family
Probab=69.77 E-value=10 Score=25.28 Aligned_cols=27 Identities=22% Similarity=0.153 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHH
Q 012772 351 QTREKLIKILMELEDWKEALAYCQLTI 377 (456)
Q Consensus 351 ~~~~~L~~~~~~~g~~~~A~~~~~~~l 377 (456)
.+++.++..|.+.|++++|.++++++.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~ 30 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMK 30 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 467889999999999999999999886
No 327
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=69.76 E-value=8.7 Score=22.87 Aligned_cols=28 Identities=18% Similarity=0.105 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 012772 351 QTREKLIKILMELEDWKEALAYCQLTIP 378 (456)
Q Consensus 351 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~ 378 (456)
.+++.++.++.+.|+++.|.+++..+.+
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4578899999999999999999887654
No 328
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=69.69 E-value=1.3e+02 Score=30.39 Aligned_cols=125 Identities=14% Similarity=0.062 Sum_probs=74.9
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhh--cC----CCCccHHHH----HHHHHHHHHHccCHHHHHHHHHHHHHH
Q 012772 310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKL--YH----PFSVNLMQT----REKLIKILMELEDWKEALAYCQLTIPV 379 (456)
Q Consensus 310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~--l~----p~h~~~~~~----~~~L~~~~~~~g~~~~A~~~~~~~l~~ 379 (456)
..+.+|.....|++|..|..-|+.+++++.+. ++ |..-+...+ -..|...|..+++-+.|+.+..+.+.
T Consensus 178 vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~- 256 (569)
T PF15015_consen 178 VALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSIN- 256 (569)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhh-
Confidence 34556666677888888888888888887642 22 222222222 24566789999999999999888773
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 012772 380 YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 443 (456)
Q Consensus 380 ~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~ 443 (456)
+ +|..-.-...-|.+...+.+|.||.....-|.=++-..=|.+. .+..++.++.++
T Consensus 257 ----l---nP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~~~q-~~S~lIklyWqa 312 (569)
T PF15015_consen 257 ----L---NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGGSEQ-RISKLIKLYWQA 312 (569)
T ss_pred ----c---CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchH-hHHHHHHHHHHH
Confidence 2 2222222333344555567788887766555544444434444 444455444443
No 329
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=69.64 E-value=37 Score=25.11 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhc
Q 012772 307 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLY 342 (456)
Q Consensus 307 ~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l 342 (456)
....++.+|......|++++|+.+|.++++.....+
T Consensus 5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~ 40 (75)
T cd02678 5 KAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHAL 40 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 344556667777788999999999999988776644
No 330
>PRK11906 transcriptional regulator; Provisional
Probab=69.62 E-value=28 Score=35.41 Aligned_cols=91 Identities=12% Similarity=0.074 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q 012772 325 QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL---------EDWKEALAYCQLTIPVYQRVYPQFHPLLGLQY 395 (456)
Q Consensus 325 ~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~---------g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l 395 (456)
+.|+.++.+++.. .+.+|..+.++-.++..+... .+..+|.++.+++++ -.|.=+..+
T Consensus 275 ~~Al~lf~ra~~~-----~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--------ld~~Da~a~ 341 (458)
T PRK11906 275 YRAMTIFDRLQNK-----SDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--------ITTVDGKIL 341 (458)
T ss_pred HHHHHHHHHHhhc-----ccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--------cCCCCHHHH
Confidence 4556666666532 245777788888888776542 234456666666653 233336678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchH
Q 012772 396 YTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM 433 (456)
Q Consensus 396 ~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~ 433 (456)
..+|.+++..|+++.|...+++|+. +.|+.+..
T Consensus 342 ~~~g~~~~~~~~~~~a~~~f~rA~~-----L~Pn~A~~ 374 (458)
T PRK11906 342 AIMGLITGLSGQAKVSHILFEQAKI-----HSTDIASL 374 (458)
T ss_pred HHHHHHHHhhcchhhHHHHHHHHhh-----cCCccHHH
Confidence 8999999999999999999999986 34555444
No 331
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.56 E-value=93 Score=32.00 Aligned_cols=70 Identities=14% Similarity=0.184 Sum_probs=59.0
Q ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchH
Q 012772 360 LMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM 433 (456)
Q Consensus 360 ~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~ 433 (456)
...++++.||..+.++.|++... -.....+|..+.-||.+..-.|+..|+++..+-|++.-++.+ |||..
T Consensus 455 af~qn~lnEaK~~l~e~Lkmana--ed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~--Di~vq 524 (629)
T KOG2300|consen 455 AFKQNDLNEAKRFLRETLKMANA--EDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIP--DIPVQ 524 (629)
T ss_pred HHHhccHHHHHHHHHHHHhhcch--hhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCC--CchHH
Confidence 34678999999999999987632 256688899999999999999999999999999999999885 77644
No 332
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=68.69 E-value=24 Score=33.60 Aligned_cols=67 Identities=13% Similarity=0.105 Sum_probs=47.3
Q ss_pred CccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Q 012772 346 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLG---DTENAIKSMTEAVE 420 (456)
Q Consensus 346 h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g---~~~eA~~~l~~Al~ 420 (456)
||.=.+-+.-|+.+|..+|++..|..-|.+++.+ -++.|.+ +..+|.++..+. ...++..++++|+.
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-----~g~n~~~---~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRL-----AGDNPEI---LLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 4444677788999999999999999999998853 3566665 444555555432 34567777777764
No 333
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=68.57 E-value=95 Score=29.68 Aligned_cols=56 Identities=14% Similarity=0.107 Sum_probs=33.0
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHH----HHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHH
Q 012772 313 KKTLALTSCGNHQEVVSTYKMIEKL----QKKLYHPFSVNLMQTREKLIKILMELEDWKEALAY 372 (456)
Q Consensus 313 ~~a~~~~~~g~~~~a~~~~~~~~~~----~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~ 372 (456)
+.|..+....++++|+..|++++.. -++.+.. --.+..+|+.+|...|++..-.+.
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nE----qE~tvlel~~lyv~~g~~~~l~~~ 67 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNE----QEATVLELFKLYVSKGDYCSLGDT 67 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhH----HHHHHHHHHHHHHhcCCcchHHHH
Confidence 4444555566788888888887654 2222211 123445788888888766544333
No 334
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.31 E-value=79 Score=29.67 Aligned_cols=61 Identities=16% Similarity=0.223 Sum_probs=42.0
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHHH
Q 012772 312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL---EDWKEALAYCQLTIPVY 380 (456)
Q Consensus 312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~---g~~~~A~~~~~~~l~~~ 380 (456)
.+.+..|.+.|+|++|.--++.++- .-|.++.... .++.++..+ .+++-|.+|+.+++++-
T Consensus 158 ~eLaeiY~~~~~f~kA~fClEE~ll-----~~P~n~l~f~---rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 158 HELAEIYLSEGDFEKAAFCLEELLL-----IQPFNPLYFQ---RLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHH-----cCCCcHHHHH---HHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 3456667888999999888887753 3455554443 355555444 47788999999999763
No 335
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=67.90 E-value=76 Score=30.81 Aligned_cols=90 Identities=22% Similarity=0.316 Sum_probs=63.8
Q ss_pred HHHHHHHHHhhcC--CCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH
Q 012772 331 YKMIEKLQKKLYH--PFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDT 408 (456)
Q Consensus 331 ~~~~~~~~~~~l~--p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~ 408 (456)
.+.++..+..++. .....++.+...++.+..+.|.++.|..+..++.. ..+..+.......++-+++.+..|+.
T Consensus 125 ~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~----~~~~~~~~~~~v~~e~akllw~~g~~ 200 (352)
T PF02259_consen 125 WEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQ----LNPSSESLLPRVFLEYAKLLWAQGEQ 200 (352)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhc----cCCcccCCCcchHHHHHHHHHHcCCH
Confidence 3444444444443 22345677888999999999999999988777543 23234444556677789999999999
Q ss_pred HHHHHHHHHHHH-HHHH
Q 012772 409 ENAIKSMTEAVE-ILRI 424 (456)
Q Consensus 409 ~eA~~~l~~Al~-i~~~ 424 (456)
.+|...+++.+. .+..
T Consensus 201 ~~Ai~~L~~~~~~~~~~ 217 (352)
T PF02259_consen 201 EEAIQKLRELLKCRLSK 217 (352)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 999999988887 4443
No 336
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.70 E-value=59 Score=34.48 Aligned_cols=102 Identities=14% Similarity=0.021 Sum_probs=69.0
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772 313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 392 (456)
Q Consensus 313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~ 392 (456)
..|.....-.+|..++++|+..+..... ...+...+....+|.-.|..+++++.|.++++.+-+ + .|..-
T Consensus 359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~--D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~----~----d~~~~ 428 (872)
T KOG4814|consen 359 NTAKKLFKMEKYVVSIRFYKLSLKDIIS--DNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEE----V----DRQSP 428 (872)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhccc--hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh----h----ccccH
Confidence 3444444555788888888877653211 112334578888999999999999999999988743 2 23333
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012772 393 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 424 (456)
Q Consensus 393 ~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~ 424 (456)
..-+.+-++....|+-++|+..+.+...++.-
T Consensus 429 l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 429 LCQLLMLQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 34444555566788889999888887777654
No 337
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=67.51 E-value=9.9 Score=38.93 Aligned_cols=78 Identities=14% Similarity=0.091 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh--cC-CCChHHHHHHHHHHH----------HHHHcCCHHHHHHHHHH
Q 012772 351 QTREKLIKILMELEDWKEALAYCQLTIPVYQRV--YP-QFHPLLGLQYYTCGK----------LEWFLGDTENAIKSMTE 417 (456)
Q Consensus 351 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~--~g-~~hp~~~~~l~~La~----------~~~~~g~~~eA~~~l~~ 417 (456)
..+..|+.+...+|+++-|.+.++++-+.-... |- ..+......+.+++. .++.+|+.++..+.|.+
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHHH
Confidence 477899999999999999999998765432221 11 122222222222222 13346777888888877
Q ss_pred H-----HHHHHHhcCC
Q 012772 418 A-----VEILRITHGT 428 (456)
Q Consensus 418 A-----l~i~~~~~G~ 428 (456)
+ -.++.++|||
T Consensus 428 ~~~~~~A~~~A~ty~~ 443 (443)
T PF04053_consen 428 TGRLPEAALFARTYGP 443 (443)
T ss_dssp TT-HHHHHHHHHHTT-
T ss_pred cCCchHHHHHHHhcCC
Confidence 6 4466666664
No 338
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.27 E-value=71 Score=32.80 Aligned_cols=95 Identities=11% Similarity=0.050 Sum_probs=72.5
Q ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 012772 319 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC 398 (456)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~L 398 (456)
+.+++++||....++.+++... -..+..++-.+--|+.+....|+-.++...-+-++...+++ ++||...+...-+
T Consensus 456 f~qn~lnEaK~~l~e~Lkmana--ed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi--~Di~vqLws~si~ 531 (629)
T KOG2300|consen 456 FKQNDLNEAKRFLRETLKMANA--EDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI--PDIPVQLWSSSIL 531 (629)
T ss_pred HHhccHHHHHHHHHHHHhhcch--hhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC--CCchHHHHHHHHH
Confidence 4678999998877777765411 12345566677778888889999999999999999888877 7899999999999
Q ss_pred HHHHHHcCC--HHHHHHHHHH
Q 012772 399 GKLEWFLGD--TENAIKSMTE 417 (456)
Q Consensus 399 a~~~~~~g~--~~eA~~~l~~ 417 (456)
-.++...|+ .++..+.+.+
T Consensus 532 ~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 532 TDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred HHHHHHhCcchhhHHHHHHHH
Confidence 999999988 4555444443
No 339
>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]. Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.
Probab=67.11 E-value=2.8 Score=27.52 Aligned_cols=30 Identities=20% Similarity=0.377 Sum_probs=18.8
Q ss_pred ccCcCcCCCCCCccCcCCCCcccccHHhhhhcHH
Q 012772 28 SRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWK 61 (456)
Q Consensus 28 ~~C~~C~~~~~~~~C~~C~~v~yCs~~C~~~~~~ 61 (456)
.+|..|-+.... .-....|||++|+..|+.
T Consensus 7 ~yC~~Cdk~~~~----~~~~~lYCSe~Cr~~D~~ 36 (43)
T PF12855_consen 7 DYCIVCDKQIDP----PDDGSLYCSEECRLKDQE 36 (43)
T ss_pred hHHHHhhccccC----CCCCccccCHHHHhHhhh
Confidence 456666555211 223447999999998864
No 340
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=66.29 E-value=50 Score=24.34 Aligned_cols=38 Identities=18% Similarity=0.023 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 012772 390 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 427 (456)
Q Consensus 390 ~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G 427 (456)
..|..+..-|.-+-..|++++|..+|.+|++.+.....
T Consensus 6 ~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~ 43 (77)
T smart00745 6 SKAKELISKALKADEAGDYEEALELYKKAIEYLLEGIK 43 (77)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhc
Confidence 44555566666666789999999999999998887543
No 341
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=66.05 E-value=1.2e+02 Score=30.15 Aligned_cols=82 Identities=16% Similarity=0.177 Sum_probs=49.1
Q ss_pred HccCHHHHHHHHHHHHHHHHHhcCCCChHHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 012772 362 ELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL--QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILK 439 (456)
Q Consensus 362 ~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~--~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~ 439 (456)
+....++.+.-.++.+.-|+.-.|-..|.... ....++.+ ..++.++. .-+.-+...+|++||.+..+...
T Consensus 178 ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L---~~~l~~~~----~~l~~l~~~~~~~~P~v~~l~~~ 250 (362)
T TIGR01010 178 EVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTL---EGELIRVQ----AQLAQLRSITPEQNPQVPSLQAR 250 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHH---HHHHHHHH----HHHHHHHhhCCCCCCchHHHHHH
Confidence 33455556666666677777777766665421 11222222 22233333 33334455788889999999999
Q ss_pred HHHHHHHHHhh
Q 012772 440 LEEAQAEASYK 450 (456)
Q Consensus 440 l~~~~~e~~~~ 450 (456)
++.++..+...
T Consensus 251 i~~l~~~i~~e 261 (362)
T TIGR01010 251 IKSLRKQIDEQ 261 (362)
T ss_pred HHHHHHHHHHH
Confidence 88888877653
No 342
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=65.80 E-value=4.1 Score=26.27 Aligned_cols=26 Identities=23% Similarity=0.529 Sum_probs=14.9
Q ss_pred cCCCCCCCcccC----CCCCCeeeccCCCc
Q 012772 270 KDDGCSGFLLRD----SDDKGFTCQQCGLV 295 (456)
Q Consensus 270 ~C~~C~~~~~~~----~~~~~~~C~~C~~~ 295 (456)
.|.+|...+.|- .....|.|.-|+..
T Consensus 4 rC~~C~aylNp~~~~~~~~~~w~C~~C~~~ 33 (40)
T PF04810_consen 4 RCRRCRAYLNPFCQFDDGGKTWICNFCGTK 33 (40)
T ss_dssp B-TTT--BS-TTSEEETTTTEEEETTT--E
T ss_pred ccCCCCCEECCcceEcCCCCEEECcCCCCc
Confidence 477999887663 34568999999864
No 343
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=65.40 E-value=1.4e+02 Score=28.99 Aligned_cols=112 Identities=15% Similarity=0.039 Sum_probs=75.1
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HHHHh-----
Q 012772 310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIP-VYQRV----- 383 (456)
Q Consensus 310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~-~~e~~----- 383 (456)
..+..|.....+|.++-|...+.++... ..+.+.....+...-+.+....|+-.+|+...+..+. .....
T Consensus 148 ~~l~~a~~aRk~g~~~~A~~~l~~~~~~----~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 148 TWLKFAKLARKAGNFQLALSALNRLFQL----NPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhcc----CCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 3345555566789999888766655422 2122222344555567778888999999999888887 33322
Q ss_pred --------------------cCCCChHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHHh
Q 012772 384 --------------------YPQFHPLLGLQYYTCGKLEWFL------GDTENAIKSMTEAVEILRIT 425 (456)
Q Consensus 384 --------------------~g~~hp~~~~~l~~La~~~~~~------g~~~eA~~~l~~Al~i~~~~ 425 (456)
-...-...+..+..+|+....+ +..+++.+.|.+|..+....
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 291 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW 291 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH
Confidence 1123366777888888888777 88899999999998875443
No 344
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=63.55 E-value=33 Score=36.71 Aligned_cols=57 Identities=19% Similarity=0.230 Sum_probs=39.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCch
Q 012772 363 LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF 432 (456)
Q Consensus 363 ~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~ 432 (456)
.++|+++.++.+..+.+ .|..-..+|.+|-+.+.+++++.|.+.|.+++ ++-|+|..
T Consensus 498 ~~~fs~~~~hle~sl~~--------nplq~~~wf~~G~~ALqlek~q~av~aF~rcv-----tL~Pd~~e 554 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEI--------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCV-----TLEPDNAE 554 (777)
T ss_pred chhHHHHHHHHHHHhhc--------CccchhHHHhccHHHHHHhhhHHHHHHHHHHh-----hcCCCchh
Confidence 45555555555555532 45556678888999999999999999998765 35566643
No 345
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=63.47 E-value=60 Score=24.21 Aligned_cols=35 Identities=11% Similarity=0.248 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhc
Q 012772 308 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLY 342 (456)
Q Consensus 308 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l 342 (456)
.......|..+..+|++++|+..|+.+.+...+++
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~ 40 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIV 40 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 44556677778889999999999999988766653
No 346
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=63.42 E-value=62 Score=32.16 Aligned_cols=40 Identities=13% Similarity=0.168 Sum_probs=34.2
Q ss_pred CccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 012772 346 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP 385 (456)
Q Consensus 346 h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g 385 (456)
||+-+.++-.++.++..+|+.+.|.++.+++|-++++.+.
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~ 75 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFH 75 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4555677789999999999999999999999999986554
No 347
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=63.07 E-value=53 Score=35.00 Aligned_cols=19 Identities=21% Similarity=0.073 Sum_probs=8.8
Q ss_pred HHHHHHHHccCHHHHHHHH
Q 012772 355 KLIKILMELEDWKEALAYC 373 (456)
Q Consensus 355 ~L~~~~~~~g~~~~A~~~~ 373 (456)
.+++++-++++.+.|.+-|
T Consensus 690 mlGQi~e~~~~ie~aR~aY 708 (913)
T KOG0495|consen 690 MLGQIEEQMENIEMAREAY 708 (913)
T ss_pred HHhHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 348
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=62.92 E-value=42 Score=24.97 Aligned_cols=53 Identities=23% Similarity=0.174 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-CCCCchHHHHH-HHHHH
Q 012772 390 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH-GTNSPFMKELI-LKLEE 442 (456)
Q Consensus 390 ~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~-G~~h~~~~~~~-~~l~~ 442 (456)
..|..+...|.-.-..|+|++|...|.++++.+.... +...|..++.+ .+.++
T Consensus 4 ~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~e 58 (75)
T cd02677 4 EQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVKRKIAE 58 (75)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 4456666666666677999999999999999988854 66666666544 33333
No 349
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.73 E-value=1.8e+02 Score=30.68 Aligned_cols=71 Identities=15% Similarity=0.227 Sum_probs=50.8
Q ss_pred HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCC----------------ccHHHHHHHHHHHHHHccCHHHHHH
Q 012772 308 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFS----------------VNLMQTREKLIKILMELEDWKEALA 371 (456)
Q Consensus 308 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h----------------~~~~~~~~~L~~~~~~~g~~~~A~~ 371 (456)
+.+++..|.....||+.+-|.++.++++-..++.+||.- ....-++..-+.-+.+.|-|.-|++
T Consensus 284 vdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E 363 (665)
T KOG2422|consen 284 VDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALE 363 (665)
T ss_pred hhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 345666777777899999999999999887777777742 2223333344445556799999999
Q ss_pred HHHHHHH
Q 012772 372 YCQLTIP 378 (456)
Q Consensus 372 ~~~~~l~ 378 (456)
+|+-++.
T Consensus 364 ~cKllls 370 (665)
T KOG2422|consen 364 WCKLLLS 370 (665)
T ss_pred HHHHHhh
Confidence 9987664
No 350
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=62.60 E-value=51 Score=24.64 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=26.5
Q ss_pred HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhc
Q 012772 309 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLY 342 (456)
Q Consensus 309 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l 342 (456)
..++.+|...-..|++++|+.+|..++......+
T Consensus 7 ~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~l 40 (77)
T cd02683 7 KEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVL 40 (77)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 3455666667778999999999999988876654
No 351
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=62.56 E-value=41 Score=25.36 Aligned_cols=59 Identities=8% Similarity=-0.120 Sum_probs=41.8
Q ss_pred HccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 012772 362 ELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 425 (456)
Q Consensus 362 ~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~ 425 (456)
...+.++|+..-+++|.-. .+.+..-..+--|..++...|+|.+++++..+-++|-+.-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~el 76 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEEL 76 (80)
T ss_pred ccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445566666666655432 3456677788888999999999999999988777776543
No 352
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=61.89 E-value=1.7e+02 Score=28.77 Aligned_cols=78 Identities=17% Similarity=0.164 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772 351 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS 430 (456)
Q Consensus 351 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h 430 (456)
.+-.-+..+..+.+|.++|+++..++.+-....--+ -.+......+|.+++..|+..++.+.+.....++....|-+.
T Consensus 76 slvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~--~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~ 153 (380)
T KOG2908|consen 76 SLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEP--DAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTS 153 (380)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCCh
Confidence 344445555667789999999999998876654323 356777888899999999999999999999998887766544
No 353
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=61.62 E-value=63 Score=23.86 Aligned_cols=54 Identities=20% Similarity=0.083 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-CCCCchHHHH-HHHHHHHH
Q 012772 391 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH-GTNSPFMKEL-ILKLEEAQ 444 (456)
Q Consensus 391 ~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~-G~~h~~~~~~-~~~l~~~~ 444 (456)
.|..+..-|.-.-..|++++|..+|.+|++.+.... ....|..... ..+..+..
T Consensus 5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~k~~eyl 60 (75)
T cd02678 5 KAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIRAKCTEYL 60 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 455566666666778999999999999999998864 3334444443 34444443
No 354
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=61.56 E-value=1.4e+02 Score=34.83 Aligned_cols=72 Identities=15% Similarity=0.087 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772 351 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS 430 (456)
Q Consensus 351 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h 430 (456)
..+..|..+|..-+.+++|.+++++++.-+ + ..-..+..+|..++.+.+-++|..++.+|+.-+-+. +|
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF----~----q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~---eH 1599 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKF----G----QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ---EH 1599 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHh----c----chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh---hh
Confidence 445678888999999999999988877533 3 233456667888888898999999999999887762 55
Q ss_pred chH
Q 012772 431 PFM 433 (456)
Q Consensus 431 ~~~ 433 (456)
..+
T Consensus 1600 v~~ 1602 (1710)
T KOG1070|consen 1600 VEF 1602 (1710)
T ss_pred HHH
Confidence 433
No 355
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=61.26 E-value=71 Score=33.97 Aligned_cols=98 Identities=12% Similarity=0.067 Sum_probs=63.2
Q ss_pred hcCChHHHHHHHHHHHHHH--HhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 012772 320 SCGNHQEVVSTYKMIEKLQ--KKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 397 (456)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~--~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~ 397 (456)
..+++++|.+-+..++.-- .+.-|++++. ....+..+..+..+.-..+. +-++.+.-.+.+.-.+|.....
T Consensus 181 ~~d~~~eaa~~la~vln~d~f~sk~gkSn~q---lw~elcdlis~~p~~~~sln----vdaiiR~gi~rftDq~g~Lw~S 253 (835)
T KOG2047|consen 181 KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQ---LWLELCDLISQNPDKVQSLN----VDAIIRGGIRRFTDQLGFLWCS 253 (835)
T ss_pred hccchHHHHHHHHHhcCchhhhhhcccchhh---HHHHHHHHHHhCcchhcccC----HHHHHHhhcccCcHHHHHHHHH
Confidence 4567778877766665421 1233444433 33344444444443322222 2234455566788899999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012772 398 CGKLEWFLGDTENAIKSMTEAVEILRI 424 (456)
Q Consensus 398 La~~~~~~g~~~eA~~~l~~Al~i~~~ 424 (456)
||+-|...|.++.|...|++|+.-...
T Consensus 254 LAdYYIr~g~~ekarDvyeeai~~v~t 280 (835)
T KOG2047|consen 254 LADYYIRSGLFEKARDVYEEAIQTVMT 280 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhee
Confidence 999999999999999999999875443
No 356
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=61.01 E-value=66 Score=35.37 Aligned_cols=27 Identities=15% Similarity=0.086 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772 394 QYYTCGKLEWFLGDTENAIKSMTEAVE 420 (456)
Q Consensus 394 ~l~~La~~~~~~g~~~eA~~~l~~Al~ 420 (456)
++..|..+|..+|++++|...|++|..
T Consensus 79 tLq~l~~~y~d~~~~d~~~~~Ye~~~~ 105 (932)
T KOG2053|consen 79 TLQFLQNVYRDLGKLDEAVHLYERANQ 105 (932)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 444455556666666666666666554
No 357
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=60.88 E-value=15 Score=34.70 Aligned_cols=44 Identities=23% Similarity=0.288 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772 369 ALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 420 (456)
Q Consensus 369 A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~ 420 (456)
|+.||.+++.+ .|..|..+++||.++...|+.-+|+-+|-||+.
T Consensus 1 A~~~Y~~A~~l--------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~ 44 (278)
T PF10373_consen 1 AERYYRKAIRL--------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLA 44 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHS
T ss_pred CHHHHHHHHHh--------CCCCCCcccchhhhhccccchHHHHHHHHHHHh
Confidence 67788888754 577899999999999999999999999888874
No 358
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=60.74 E-value=66 Score=23.89 Aligned_cols=43 Identities=9% Similarity=-0.028 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhc-CCCCccHH
Q 012772 308 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLY-HPFSVNLM 350 (456)
Q Consensus 308 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l-~p~h~~~~ 350 (456)
+-.++..|......|++++|+.+|..+++.....+ ...++..-
T Consensus 6 Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k 49 (75)
T cd02684 6 AIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRK 49 (75)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHH
Confidence 34555666666778999999999999988776654 33444443
No 359
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=60.65 E-value=62 Score=35.44 Aligned_cols=96 Identities=18% Similarity=0.147 Sum_probs=58.6
Q ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh---cCCCChHHH---
Q 012772 319 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRV---YPQFHPLLG--- 392 (456)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~---~g~~hp~~~--- 392 (456)
.++|.|++|.++.+ +.+..++-.++++-|.-+...+|.+.|++|++++-.-.-.+ +-.+-|.+-
T Consensus 837 Qs~g~w~eA~eiAE----------~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv 906 (1416)
T KOG3617|consen 837 QSQGMWSEAFEIAE----------TKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYV 906 (1416)
T ss_pred HhcccHHHHHHHHh----------hccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHH
Confidence 35677776665432 23445567778888888888899999999998653211111 111111111
Q ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012772 393 ------LQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 424 (456)
Q Consensus 393 ------~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~ 424 (456)
..+..+|+..-..|+.+.|+.+|..|.+-+..
T Consensus 907 ~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~ 944 (1416)
T KOG3617|consen 907 RRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSM 944 (1416)
T ss_pred HhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhh
Confidence 22334466666688889999998888775544
No 360
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=60.22 E-value=1.2e+02 Score=30.27 Aligned_cols=98 Identities=8% Similarity=-0.021 Sum_probs=56.4
Q ss_pred HhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH---cCCHHHHHHHH
Q 012772 339 KKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF---LGDTENAIKSM 415 (456)
Q Consensus 339 ~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~---~g~~~eA~~~l 415 (456)
++.+.........+..+|.-.|...++|+.=+++.+.+-. +-...-+.....-+..|.++.. .|+.++|+..+
T Consensus 130 ~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~----~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il 205 (374)
T PF13281_consen 130 RQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEA----LPTCDVANQHNIKFQYAFALNRRNKPGDREKALQIL 205 (374)
T ss_pred HHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhc----cCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHH
Confidence 4445544455566777888889999999877666554322 1111122223334566666666 78888887777
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 012772 416 TEAVEILRITHGTNSPFMKELILKLEEAQAEA 447 (456)
Q Consensus 416 ~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~ 447 (456)
.+++. ++.+..-+++..++.+.+++
T Consensus 206 ~~~l~-------~~~~~~~d~~gL~GRIyKD~ 230 (374)
T PF13281_consen 206 LPVLE-------SDENPDPDTLGLLGRIYKDL 230 (374)
T ss_pred HHHHh-------ccCCCChHHHHHHHHHHHHH
Confidence 76632 23333334555555555444
No 361
>PF12854 PPR_1: PPR repeat
Probab=59.95 E-value=20 Score=21.88 Aligned_cols=26 Identities=19% Similarity=0.091 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 012772 392 GLQYYTCGKLEWFLGDTENAIKSMTE 417 (456)
Q Consensus 392 ~~~l~~La~~~~~~g~~~eA~~~l~~ 417 (456)
..+++.|-..+.+.|+.++|.+++++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45788888899999999999999875
No 362
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=59.88 E-value=40 Score=25.13 Aligned_cols=47 Identities=32% Similarity=0.178 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHH-HHH
Q 012772 391 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELI-LKL 440 (456)
Q Consensus 391 ~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~-~~l 440 (456)
.|..+.+-|.-.-..|++++|..+|..|++.+... .+|...+++ .++
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~e---kn~~~k~~i~~K~ 52 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVELCINT---SNETMDQALQTKL 52 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHh---cChhhHHHHHHHH
Confidence 45555556666667899999999999999999884 445444433 444
No 363
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.70 E-value=33 Score=30.21 Aligned_cols=73 Identities=14% Similarity=0.003 Sum_probs=52.3
Q ss_pred hhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q 012772 317 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY 396 (456)
Q Consensus 317 ~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~ 396 (456)
.++..|.|++.. ...+.+-++.|+....++..|+-+-.+.|+|..|..++.++.. ...-|.+-..++..+.
T Consensus 141 lLvD~gsy~dV~-------srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~--Da~aprnirqRAq~ml 211 (221)
T COG4649 141 LLVDNGSYDDVS-------SRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN--DAQAPRNIRQRAQIML 211 (221)
T ss_pred HHhccccHHHHH-------HHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc--cccCcHHHHHHHHHHH
Confidence 345667666543 3345667899999999999999999999999999999988765 3334444455555444
Q ss_pred HH
Q 012772 397 TC 398 (456)
Q Consensus 397 ~L 398 (456)
.|
T Consensus 212 dl 213 (221)
T COG4649 212 DL 213 (221)
T ss_pred HH
Confidence 43
No 364
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=59.48 E-value=70 Score=26.37 Aligned_cols=72 Identities=13% Similarity=0.135 Sum_probs=47.9
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHc-CCHHHHHHHHH------------HHHHHHHHhcCCCCchHHH-HHHHHHHHHHH
Q 012772 381 QRVYPQFHPLLGLQYYTCGKLEWFL-GDTENAIKSMT------------EAVEILRITHGTNSPFMKE-LILKLEEAQAE 446 (456)
Q Consensus 381 e~~~g~~hp~~~~~l~~La~~~~~~-g~~~eA~~~l~------------~Al~i~~~~~G~~h~~~~~-~~~~l~~~~~e 446 (456)
+..-..+.|--|+.+.++++.-... +...+.+++|. |||.|+....+..++.... +..+...++.
T Consensus 8 ~ATsdd~~p~pgy~~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~- 86 (122)
T cd03572 8 KATSDDDEPTPGYLYEEIAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRE- 86 (122)
T ss_pred HHhcCCCCCCchHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHH-
Confidence 3345577888899999999887764 56666666653 7888888877777766655 4455444444
Q ss_pred HHhhhcc
Q 012772 447 ASYKLSS 453 (456)
Q Consensus 447 ~~~~~~~ 453 (456)
+..+++.
T Consensus 87 ~~~f~g~ 93 (122)
T cd03572 87 CANYKGP 93 (122)
T ss_pred HHHcCCC
Confidence 4444553
No 365
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.23 E-value=1.6e+02 Score=27.87 Aligned_cols=63 Identities=16% Similarity=0.273 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012772 350 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAV 419 (456)
Q Consensus 350 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al 419 (456)
..+++.++.++..+|+|.-....+.+++. .+|+..|. .+..||.+.+..|+.+.|.+++++.-
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~----~~~e~~p~---L~s~Lgr~~MQ~GD~k~a~~yf~~ve 239 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIK----YYPEQEPQ---LLSGLGRISMQIGDIKTAEKYFQDVE 239 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHH----hCCcccHH---HHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 35566777777777888777777776665 44455554 45667777778888888877777543
No 366
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=59.00 E-value=4.1 Score=41.84 Aligned_cols=51 Identities=24% Similarity=0.242 Sum_probs=39.3
Q ss_pred cceeeeccccc-cccCCCcCCCeeEE----eCCEEEEEEecCCCCCCcccCChhhH
Q 012772 210 PLGTGLYPVIS-IINHSCLPNAVLVF----EGRLAVVRAVQHVPKGAEGQFDDIQE 260 (456)
Q Consensus 210 ~~g~glyp~~s-l~NHSC~PN~~~~f----~~~~~~vra~~~I~~Gee~~~~~~r~ 260 (456)
.+-.+-++..| ++||||.||+.-.- ....+.+.|.+.|+.|+|+++.+..-
T Consensus 362 ~id~~~~~n~sr~~nh~~~~~v~~~k~~~~~~t~~~~~a~~~i~~g~e~t~~~n~~ 417 (463)
T KOG1081|consen 362 IIDAGPKGNYSRFLNHSCQPNVETEKWQVIGDTRVGLFAPRQIEAGEELTFNYNGN 417 (463)
T ss_pred ccccccccchhhhhcccCCCceeechhheecccccccccccccccchhhhheeecc
Confidence 45566677666 67999999997643 24578899999999999999876643
No 367
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=58.13 E-value=29 Score=21.68 Aligned_cols=23 Identities=17% Similarity=0.132 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 012772 394 QYYTCGKLEWFLGDTENAIKSMT 416 (456)
Q Consensus 394 ~l~~La~~~~~~g~~~eA~~~l~ 416 (456)
.++.+|-.+..+|++++|+++++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 46778999999999999999955
No 368
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=58.01 E-value=6.8 Score=29.81 Aligned_cols=26 Identities=15% Similarity=0.322 Sum_probs=18.5
Q ss_pred CCCCCCCcccCCCCCCeeeccCCCcC
Q 012772 271 DDGCSGFLLRDSDDKGFTCQQCGLVR 296 (456)
Q Consensus 271 C~~C~~~~~~~~~~~~~~C~~C~~~~ 296 (456)
|+.|...-..-.....|.|.+||.+.
T Consensus 38 Cp~C~~~~VkR~a~GIW~C~kCg~~f 63 (89)
T COG1997 38 CPFCGRTTVKRIATGIWKCRKCGAKF 63 (89)
T ss_pred CCCCCCcceeeeccCeEEcCCCCCee
Confidence 46888654434456789999999754
No 369
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=58.00 E-value=72 Score=23.40 Aligned_cols=35 Identities=20% Similarity=0.174 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhc
Q 012772 308 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLY 342 (456)
Q Consensus 308 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l 342 (456)
...++..|......|++++|+.+|..+++.....+
T Consensus 6 a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~ 40 (75)
T cd02656 6 AKELIKQAVKEDEDGNYEEALELYKEALDYLLQAL 40 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 34455666667778999999999999988776654
No 370
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=57.91 E-value=5.5 Score=37.66 Aligned_cols=37 Identities=24% Similarity=0.780 Sum_probs=27.2
Q ss_pred ccC--cCcCCCCCCccCcCC-----CCcccccHHhhhhcHHHhHH
Q 012772 28 SRC--DGCFASSNLKKCSAC-----QVVWYCGSNCQKLDWKLHRL 65 (456)
Q Consensus 28 ~~C--~~C~~~~~~~~C~~C-----~~v~yCs~~C~~~~~~~H~~ 65 (456)
..| ..|.++.. ..|+.| +...||+++|.+..|..|+.
T Consensus 7 ~~c~~~~c~~~a~-l~Cp~c~~~~i~~~~fc~q~cf~~~w~~hK~ 50 (369)
T KOG2738|consen 7 ISCEGLQCGSEAS-LQCPTCLKLGIKSAYFCAQECFKNSWLSHKK 50 (369)
T ss_pred ceeeccccCChhh-ccCchhhhcCCCcccccCchhhhcchhhhhh
Confidence 456 67777644 678877 22479999999999987754
No 371
>PF08189 Meleagrin: Meleagrin/Cygnin family; InterPro: IPR012573 This family consists of meleagrin and cygnin basic peptides that are isolated from turkey and black swan respectively. Both peptides are low in molecular weight and contain three disulphide bonds with high concentrations of aromatic residues. These peptides show similarity to transferrins and probably play some vital role in avian eggs but the exact function is still unknown [].
Probab=57.90 E-value=2 Score=26.56 Aligned_cols=20 Identities=40% Similarity=1.051 Sum_probs=15.5
Q ss_pred CCCCcccccHHhhhhc-HHHh
Q 012772 44 ACQVVWYCGSNCQKLD-WKLH 63 (456)
Q Consensus 44 ~C~~v~yCs~~C~~~~-~~~H 63 (456)
-|..+-|||-.|.+.+ |.+|
T Consensus 5 ycpkiGYCS~~CsKt~vWa~s 25 (39)
T PF08189_consen 5 YCPKIGYCSSKCSKTDVWAFS 25 (39)
T ss_pred hCcccceecccccccceeeec
Confidence 3666789999999887 7644
No 372
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=57.59 E-value=39 Score=33.19 Aligned_cols=61 Identities=13% Similarity=0.096 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCH
Q 012772 306 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDW 366 (456)
Q Consensus 306 ~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~ 366 (456)
..+..++....+++.+++++.|...|..+..+...++|..|..+..++.--+..++..+++
T Consensus 39 ~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~ 99 (400)
T KOG4563|consen 39 KTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKE 99 (400)
T ss_pred HHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777888999999999999999999999999999998888777777665443
No 373
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=57.39 E-value=34 Score=24.71 Aligned_cols=34 Identities=24% Similarity=0.231 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhh
Q 012772 308 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKL 341 (456)
Q Consensus 308 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~ 341 (456)
.-.+...|......|++++|++.|..++......
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~ 38 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEYLMQA 38 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3445667777778999999999999988765543
No 374
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=57.10 E-value=8.4 Score=26.10 Aligned_cols=25 Identities=24% Similarity=0.740 Sum_probs=18.2
Q ss_pred CCCCCCCcccCCCC--CCeeeccCCCc
Q 012772 271 DDGCSGFLLRDSDD--KGFTCQQCGLV 295 (456)
Q Consensus 271 C~~C~~~~~~~~~~--~~~~C~~C~~~ 295 (456)
|+.|...+.+.... ..|.|+.||..
T Consensus 3 Cp~Cg~~l~~~~~~~~~~~vC~~Cg~~ 29 (52)
T smart00661 3 CPKCGNMLIPKEGKEKRRFVCRKCGYE 29 (52)
T ss_pred CCCCCCccccccCCCCCEEECCcCCCe
Confidence 78998877655432 36899999964
No 375
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.68 E-value=1.2e+02 Score=32.03 Aligned_cols=86 Identities=8% Similarity=-0.032 Sum_probs=51.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC----CCChHHHHH--------HHHHHH-HHHHcCCHHHHHHHHHHH-
Q 012772 353 REKLIKILMELEDWKEALAYCQLTIPVYQRVYP----QFHPLLGLQ--------YYTCGK-LEWFLGDTENAIKSMTEA- 418 (456)
Q Consensus 353 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g----~~hp~~~~~--------l~~La~-~~~~~g~~~eA~~~l~~A- 418 (456)
+..|+.+....|++..|.+...++-+.--.++= ++++.+... -+|+|- .|+..|+++++.++|.+.
T Consensus 669 w~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 669 WRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHhcC
Confidence 457888888888998888888776553222221 233321110 112221 355679999999999887
Q ss_pred ----HHHHHHhcCCCCchHHHHHHHH
Q 012772 419 ----VEILRITHGTNSPFMKELILKL 440 (456)
Q Consensus 419 ----l~i~~~~~G~~h~~~~~~~~~l 440 (456)
-+.+.++|+|+ .+.+++..+
T Consensus 749 r~peAal~ArtYlps--~vs~iv~~w 772 (794)
T KOG0276|consen 749 RLPEAALFARTYLPS--QVSRIVELW 772 (794)
T ss_pred cCcHHHHHHhhhChH--HHHHHHHHH
Confidence 45677788873 344444443
No 376
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=56.34 E-value=1.3e+02 Score=33.31 Aligned_cols=62 Identities=16% Similarity=0.146 Sum_probs=42.5
Q ss_pred HhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 012772 316 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 389 (456)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp 389 (456)
-.....|+.++|..+++.. ..+++++-.++ ..+-.+|.++|.+++|..+|+++.. .||.+|-
T Consensus 51 Lsl~r~gk~~ea~~~Le~~-----~~~~~~D~~tL---q~l~~~y~d~~~~d~~~~~Ye~~~~----~~P~eel 112 (932)
T KOG2053|consen 51 LSLFRLGKGDEALKLLEAL-----YGLKGTDDLTL---QFLQNVYRDLGKLDEAVHLYERANQ----KYPSEEL 112 (932)
T ss_pred HHHHHhcCchhHHHHHhhh-----ccCCCCchHHH---HHHHHHHHHHhhhhHHHHHHHHHHh----hCCcHHH
Confidence 3345678888887554433 34556644444 4567789999999999999999875 5666443
No 377
>PRK00420 hypothetical protein; Validated
Probab=56.34 E-value=40 Score=27.26 Aligned_cols=29 Identities=21% Similarity=0.143 Sum_probs=20.8
Q ss_pred cccCCCCCCCcccCCCCCCeeeccCCCcCC
Q 012772 268 RCKDDGCSGFLLRDSDDKGFTCQQCGLVRS 297 (456)
Q Consensus 268 ~C~C~~C~~~~~~~~~~~~~~C~~C~~~~~ 297 (456)
.-.|+.|..++.... .....|+.||....
T Consensus 23 ~~~CP~Cg~pLf~lk-~g~~~Cp~Cg~~~~ 51 (112)
T PRK00420 23 SKHCPVCGLPLFELK-DGEVVCPVHGKVYI 51 (112)
T ss_pred cCCCCCCCCcceecC-CCceECCCCCCeee
Confidence 467889998876543 34678999997543
No 378
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=56.32 E-value=5.7 Score=26.83 Aligned_cols=26 Identities=23% Similarity=0.491 Sum_probs=18.8
Q ss_pred CCCCCCCcccCCCCCCeeeccCCCcC
Q 012772 271 DDGCSGFLLRDSDDKGFTCQQCGLVR 296 (456)
Q Consensus 271 C~~C~~~~~~~~~~~~~~C~~C~~~~ 296 (456)
|.+|...+.-+.......|+-||..+
T Consensus 9 C~~Cg~~~~~~~~~~~irCp~Cg~rI 34 (49)
T COG1996 9 CARCGREVELDQETRGIRCPYCGSRI 34 (49)
T ss_pred hhhcCCeeehhhccCceeCCCCCcEE
Confidence 56898776444556778999999753
No 379
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=56.14 E-value=1.2e+02 Score=32.54 Aligned_cols=78 Identities=19% Similarity=0.192 Sum_probs=59.5
Q ss_pred CCCccHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772 344 PFSVNLMQTREKLIKILM-ELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 422 (456)
Q Consensus 344 p~h~~~~~~~~~L~~~~~-~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~ 422 (456)
+....=+.++..+|.++. +..++++|..+..+++.+.++ +...-..-..-+-|++++...+... |.+.+.++++..
T Consensus 53 l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~--~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~ 129 (608)
T PF10345_consen 53 LSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER--HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDS 129 (608)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHH
Confidence 333445777788999887 688999999999999988877 4444444445556688888777766 999999988888
Q ss_pred HH
Q 012772 423 RI 424 (456)
Q Consensus 423 ~~ 424 (456)
+.
T Consensus 130 ~~ 131 (608)
T PF10345_consen 130 ET 131 (608)
T ss_pred hc
Confidence 77
No 380
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.86 E-value=87 Score=30.66 Aligned_cols=112 Identities=12% Similarity=0.011 Sum_probs=64.0
Q ss_pred hhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh---HHHH
Q 012772 317 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP---LLGL 393 (456)
Q Consensus 317 ~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp---~~~~ 393 (456)
.+...|++-+|...+.+++..+ |.+ ++. ..--=.++..+|+....... .++++|...+ -..+
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~-----PtD--lla-~kfsh~a~fy~G~~~~~k~a-------i~kIip~wn~dlp~~sY 176 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDY-----PTD--LLA-VKFSHDAHFYNGNQIGKKNA-------IEKIIPKWNADLPCYSY 176 (491)
T ss_pred HhhccccccHHHHHHHHHHHhC-----chh--hhh-hhhhhhHHHhccchhhhhhH-------HHHhccccCCCCcHHHH
Confidence 3445566666655555554321 221 221 22233467777877665554 4556665444 4355
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 012772 394 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 444 (456)
Q Consensus 394 ~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~ 444 (456)
..--+|.-+.+.|-|++|++..++|++|-+.-.=..| -..+++++=...+
T Consensus 177 v~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~H-a~aHVlem~~r~K 226 (491)
T KOG2610|consen 177 VHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASH-AKAHVLEMNGRHK 226 (491)
T ss_pred HHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHH-HHHHHHHhcchhh
Confidence 5555566667889999999999999998766433233 3444444444433
No 381
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=55.80 E-value=58 Score=33.70 Aligned_cols=63 Identities=17% Similarity=0.090 Sum_probs=49.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772 354 EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 420 (456)
Q Consensus 354 ~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~ 420 (456)
...|.++...|+.++|++.+++++.... ..+. .....++++|-.+..+.++++|..++.+-.+
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~-~~~Q---l~~l~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQS-EWKQ---LHHLCYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchh-hHHh---HHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 3567788889999999999998885432 2333 2356799999999999999999998887655
No 382
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.36 E-value=52 Score=31.10 Aligned_cols=74 Identities=22% Similarity=0.234 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 012772 349 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC-GKLEWFLGDTENAIKSMTEAVEILRIT 425 (456)
Q Consensus 349 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~L-a~~~~~~g~~~eA~~~l~~Al~i~~~~ 425 (456)
++.++.-=.++|..+.+-..-..++.++|.+--. -.||.+.....+- |+.++..|++++|..-+-+|..-....
T Consensus 190 LLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSA---IPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEs 264 (440)
T KOG1464|consen 190 LLEIYALEIQMYTEQKNNKKLKALYEQALHIKSA---IPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDES 264 (440)
T ss_pred hhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhcc---CCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccccc
Confidence 4555555556777777766666777888877544 4799888877777 577888999999998888887655443
No 383
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.11 E-value=73 Score=31.90 Aligned_cols=61 Identities=13% Similarity=0.271 Sum_probs=47.9
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 012772 313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIP 378 (456)
Q Consensus 313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~ 378 (456)
+.++-+...|+++.|++.|-++..-+.+ -..++++..+++.+.+.+|+|..-..|..++..
T Consensus 155 Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 155 DLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 3445567789999999999997665543 445788999999999999999988888766654
No 384
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.81 E-value=2e+02 Score=27.27 Aligned_cols=101 Identities=16% Similarity=0.111 Sum_probs=64.7
Q ss_pred ChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 012772 323 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE 402 (456)
Q Consensus 323 ~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~ 402 (456)
++.+|.-+|+..-. + -+.+..+.+.++.+.+.+|+|++|....+.+|.-.- ..|. .|-|+-...
T Consensus 188 k~qdAfyifeE~s~---k-----~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-----~dpe---tL~Nliv~a 251 (299)
T KOG3081|consen 188 KIQDAFYIFEELSE---K-----TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-----KDPE---TLANLIVLA 251 (299)
T ss_pred hhhhHHHHHHHHhc---c-----cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-----CCHH---HHHHHHHHH
Confidence 45555555554421 1 233556778899999999999999999988875321 2244 456666666
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 012772 403 WFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 443 (456)
Q Consensus 403 ~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~ 443 (456)
..+|+-.++..-+-.- + +..-|+||++.+...+=++-
T Consensus 252 ~~~Gkd~~~~~r~l~Q---L-k~~~p~h~~vk~~~ekeaeF 288 (299)
T KOG3081|consen 252 LHLGKDAEVTERNLSQ---L-KLSHPEHPFVKHLNEKEAEF 288 (299)
T ss_pred HHhCCChHHHHHHHHH---H-HhcCCcchHHHHHHHHHHHH
Confidence 6788886654332221 2 33568999998877664444
No 385
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=52.99 E-value=90 Score=22.95 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhc
Q 012772 307 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLY 342 (456)
Q Consensus 307 ~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l 342 (456)
++..++..|......|++++|+.+|..+++.....+
T Consensus 7 ~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~ 42 (77)
T smart00745 7 KAKELISKALKADEAGDYEEALELYKKAIEYLLEGI 42 (77)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 344556677777778999999999999988766544
No 386
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=52.91 E-value=1.2e+02 Score=32.37 Aligned_cols=96 Identities=14% Similarity=0.123 Sum_probs=48.7
Q ss_pred CChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH----------------HHHhcC
Q 012772 322 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV----------------YQRVYP 385 (456)
Q Consensus 322 g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~----------------~e~~~g 385 (456)
|-++.-...|.+++.++- -+-++..|-|..+-+..-|++|-+.|++-+.+ +-+-||
T Consensus 491 gtfestk~vYdriidLri--------aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg 562 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRI--------ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG 562 (835)
T ss_pred ccHHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc
Confidence 444444555555554421 12233444454444455555555555543332 234677
Q ss_pred CCChHHHHHHHHHHH----------HHHHcCCHHHHHHHHHHHHHHHHHh
Q 012772 386 QFHPLLGLQYYTCGK----------LEWFLGDTENAIKSMTEAVEILRIT 425 (456)
Q Consensus 386 ~~hp~~~~~l~~La~----------~~~~~g~~~eA~~~l~~Al~i~~~~ 425 (456)
+.++..+.-|++-|. +|+.=.+++|-..+.++|+.|+++.
T Consensus 563 g~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 563 GTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 777777777777642 2222234444445555555555553
No 387
>PRK05685 fliS flagellar protein FliS; Validated
Probab=52.85 E-value=1.3e+02 Score=24.96 Aligned_cols=90 Identities=7% Similarity=0.050 Sum_probs=53.6
Q ss_pred CHHHH-HHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccH-HHHHHHHHHHHHH------------
Q 012772 297 SKEEI-KKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNL-MQTREKLIKILME------------ 362 (456)
Q Consensus 297 ~~~~~-~~~~~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~-~~~~~~L~~~~~~------------ 362 (456)
++.++ .-+.+.+-..++.|......|+++++-....++..+.......-++.. ..+..+|..+|..
T Consensus 23 sp~~Li~mLydgai~~l~~A~~ai~~~~~~~~~~~l~ka~~Ii~eL~~sLd~e~ggeiA~~L~~LY~y~~~~L~~A~~~~ 102 (132)
T PRK05685 23 SPHKLIQMLYEGALSFLAQAKLAIEQGDIEAKGEYLSKAINIINGLRNSLDMEKGGEVAKNLSALYDYMIRRLLEANLRN 102 (132)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34433 334455556666777777889998887777777766554433333332 2444455555532
Q ss_pred -ccCHHHHHHHHHHHHHHHHHhcCC
Q 012772 363 -LEDWKEALAYCQLTIPVYQRVYPQ 386 (456)
Q Consensus 363 -~g~~~~A~~~~~~~l~~~e~~~g~ 386 (456)
...++++..+...+.+.|+.+-+.
T Consensus 103 d~~~l~ev~~il~~LreaW~~i~~~ 127 (132)
T PRK05685 103 DVQAIDEVEGLLREIKEAWKQIPPE 127 (132)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 245667777777777777665543
No 388
>PRK11519 tyrosine kinase; Provisional
Probab=52.60 E-value=3e+02 Score=30.30 Aligned_cols=33 Identities=12% Similarity=0.044 Sum_probs=23.2
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHh
Q 012772 417 EAVEILRITHGTNSPFMKELILKLEEAQAEASY 449 (456)
Q Consensus 417 ~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~~~ 449 (456)
.-+.-+...||++||.+..+...++.+++++..
T Consensus 325 ~~~~~l~~~y~~~hP~v~~l~~~~~~L~~~~~~ 357 (719)
T PRK11519 325 FKEAEISKLYTKEHPAYRTLLEKRKALEDEKAK 357 (719)
T ss_pred HHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHH
Confidence 334445667999999999888777666655543
No 389
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.43 E-value=2.3e+02 Score=27.57 Aligned_cols=75 Identities=15% Similarity=0.000 Sum_probs=55.3
Q ss_pred ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC---CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012772 347 VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ---FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 423 (456)
Q Consensus 347 ~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~---~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~ 423 (456)
-.++.++..||.+|-.-|+|+.|..... ....--|. +--.....+-.+|++|+..|+..+|+.+..||--.+.
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~----~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a 175 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLV----GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQA 175 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHh----ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhh
Confidence 3467888999999999999998876633 22222221 2345566788899999999999999999988865555
Q ss_pred Hh
Q 012772 424 IT 425 (456)
Q Consensus 424 ~~ 425 (456)
..
T Consensus 176 ~~ 177 (399)
T KOG1497|consen 176 ES 177 (399)
T ss_pred cc
Confidence 44
No 390
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=52.21 E-value=38 Score=33.70 Aligned_cols=69 Identities=19% Similarity=0.202 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 012772 367 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL 440 (456)
Q Consensus 367 ~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l 440 (456)
..|++|.+++.. .--|..-..+|-.+..||.++ .++-.+=.+.|++|-+|+.+..+..|-.+.+++.+|
T Consensus 335 ~~Al~yL~kA~d---~ddPetWv~vAEa~I~LGNL~--d~eS~eQe~~Y~eAE~iL~kAN~at~GKy~diLdnL 403 (404)
T PF12753_consen 335 KKALEYLKKAQD---EDDPETWVDVAEAMIDLGNLY--DNESKEQEKAYKEAEKILKKANKATNGKYQDILDNL 403 (404)
T ss_dssp HHHHHHHHHHHH---S--TTHHHHHHHHHHHHHHH---SSHHH-HHHHHHHHHHHHHHHHHTT----HHHHHHH
T ss_pred HHHHHHHHHhhc---cCChhHHHHHHHHHhhhhccc--ccchHHHHHHHHHHHHHHHHHhhccccchHHHHhhc
Confidence 345555544433 122333334444555555543 122234578899999999999999999999988776
No 391
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.75 E-value=42 Score=33.51 Aligned_cols=59 Identities=20% Similarity=0.187 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--hcCCC------CchH---HHHHHHHHHHHHHHHhh
Q 012772 392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI--THGTN------SPFM---KELILKLEEAQAEASYK 450 (456)
Q Consensus 392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~--~~G~~------h~~~---~~~~~~l~~~~~e~~~~ 450 (456)
|+...++|.-+-++++.++|+.+|++++..+.. ..|.. .+.+ ..++.+|.+.+.+++|+
T Consensus 22 A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~GIpvg~k~k~~~~~~~W~dAcaliQklkes~~~vr~R 91 (560)
T KOG2709|consen 22 AYASVEQGLCYDEVNDWENALAMYEKGLNLIVEGIPVGEKMKNARKSEMWKDACALIQKLKESKSSVRHR 91 (560)
T ss_pred HHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 556677788888899999999999999998877 11111 2333 45667888888888774
No 392
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=50.92 E-value=45 Score=37.81 Aligned_cols=83 Identities=20% Similarity=0.164 Sum_probs=48.8
Q ss_pred HccCHHHHHHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHhcCCCCchH
Q 012772 362 ELEDWKEALAYCQLTIPVYQRVY--PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTE------AVEILRITHGTNSPFM 433 (456)
Q Consensus 362 ~~g~~~~A~~~~~~~l~~~e~~~--g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~------Al~i~~~~~G~~h~~~ 433 (456)
+.|.|.+|+.+++--.+-++.+| -.+|-.--..+.+-|..|...|+.++|++.|+. |+.+.....-......
T Consensus 920 kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~ 999 (1265)
T KOG1920|consen 920 KHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELV 999 (1265)
T ss_pred hcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHH
Confidence 34666677766655555555555 244555445555667788888999999998874 5566654433333333
Q ss_pred ---HHHHHHHHHHH
Q 012772 434 ---KELILKLEEAQ 444 (456)
Q Consensus 434 ---~~~~~~l~~~~ 444 (456)
.++...|.+.+
T Consensus 1000 ~~a~~L~s~L~e~~ 1013 (1265)
T KOG1920|consen 1000 ILAEELVSRLVEQR 1013 (1265)
T ss_pred HHHHHHHHHHHHcc
Confidence 33444444443
No 393
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=49.48 E-value=11 Score=33.37 Aligned_cols=30 Identities=30% Similarity=0.699 Sum_probs=18.8
Q ss_pred ccccCCCCCCCcccCCC-CCCeeeccCCCcCCH
Q 012772 267 YRCKDDGCSGFLLRDSD-DKGFTCQQCGLVRSK 298 (456)
Q Consensus 267 f~C~C~~C~~~~~~~~~-~~~~~C~~C~~~~~~ 298 (456)
|.| ++|......... ..+|.|+.||.....
T Consensus 118 Y~C--p~C~~rytf~eA~~~~F~Cp~Cg~~L~~ 148 (178)
T PRK06266 118 FFC--PNCHIRFTFDEAMEYGFRCPQCGEMLEE 148 (178)
T ss_pred EEC--CCCCcEEeHHHHhhcCCcCCCCCCCCee
Confidence 567 678744322211 347999999987643
No 394
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=49.26 E-value=47 Score=33.45 Aligned_cols=63 Identities=16% Similarity=0.151 Sum_probs=44.3
Q ss_pred cCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 012772 321 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRV 383 (456)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~ 383 (456)
-|+|..|++..+.+.--...++..--.-.+.+.+.+|-+|..+++|.+|++.+..+|.-..+.
T Consensus 135 LGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~ 197 (404)
T PF10255_consen 135 LGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT 197 (404)
T ss_pred ccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 488988888766553222223332233345667889999999999999999999988765544
No 395
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=49.23 E-value=1.4e+02 Score=33.75 Aligned_cols=102 Identities=18% Similarity=0.136 Sum_probs=55.8
Q ss_pred CChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHHhcCCCChHHHH--HH
Q 012772 322 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----LEDWKEALAYCQLTIPVYQRVYPQFHPLLGL--QY 395 (456)
Q Consensus 322 g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~--~l 395 (456)
..|++|+..|+++..- . |....=.++...++....+ .|+- +-+.++|.-++++.| .+|. .|
T Consensus 489 ~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~----~~~~~~~~ 555 (932)
T PRK13184 489 KLYDQALIFYRRIRES---F--PGRKEGYEAQFRLGITLLEKASEQGDP----RDFTQALSEFSYLHG----GVGAPLEY 555 (932)
T ss_pred HHHHHHHHHHHHHhhc---C--CCcccchHHHHHhhHHHHHHHHhcCCh----HHHHHHHHHHHHhcC----CCCCchHH
Confidence 4566777777766432 1 2222222333334433332 2331 445555665665544 2333 44
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 012772 396 YTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 441 (456)
Q Consensus 396 ~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~ 441 (456)
..-|.+|..+|+++|-++.|.-|++- | ++||..-.+...+-
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~ 596 (932)
T PRK13184 556 LGKALVYQRLGEYNEEIKSLLLALKR----Y-SQHPEISRLRDHLV 596 (932)
T ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHh----c-CCCCccHHHHHHHH
Confidence 44455677789999999888887753 3 47887765554433
No 396
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=48.96 E-value=66 Score=30.80 Aligned_cols=56 Identities=13% Similarity=0.043 Sum_probs=38.0
Q ss_pred CCccHHHHHHHHHHHHHHccCHHHHHHHHHHHH----------------HHHHHhcCCCChHHHHHHHHHHHH
Q 012772 345 FSVNLMQTREKLIKILMELEDWKEALAYCQLTI----------------PVYQRVYPQFHPLLGLQYYTCGKL 401 (456)
Q Consensus 345 ~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l----------------~~~e~~~g~~hp~~~~~l~~La~~ 401 (456)
.+|.-.++...|+..+...|+.++|+++.-.++ ++++ .+|+.||.+...-.+|+.+
T Consensus 231 adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~-~~g~~Dp~~~~~RRkL~sl 302 (304)
T COG3118 231 ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFE-AFGPADPLVLAYRRKLYSL 302 (304)
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHh
Confidence 355567788899999999999999998864333 2222 4566666555555555544
No 397
>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]
Probab=48.76 E-value=13 Score=25.02 Aligned_cols=26 Identities=15% Similarity=0.436 Sum_probs=16.9
Q ss_pred cCCCCCCCcccCCCCCCeeeccCCCc
Q 012772 270 KDDGCSGFLLRDSDDKGFTCQQCGLV 295 (456)
Q Consensus 270 ~C~~C~~~~~~~~~~~~~~C~~C~~~ 295 (456)
.|+||...+....-.+.|.|-+||.+
T Consensus 21 ~CPrCG~gvfmA~H~dR~~CGkCgyT 46 (51)
T COG1998 21 FCPRCGPGVFMADHKDRWACGKCGYT 46 (51)
T ss_pred cCCCCCCcchhhhcCceeEeccccce
Confidence 47899853322233357999999963
No 398
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=48.63 E-value=7 Score=33.86 Aligned_cols=30 Identities=20% Similarity=0.492 Sum_probs=18.7
Q ss_pred ccccCCCCCCCcccCCC-CCCeeeccCCCcCCH
Q 012772 267 YRCKDDGCSGFLLRDSD-DKGFTCQQCGLVRSK 298 (456)
Q Consensus 267 f~C~C~~C~~~~~~~~~-~~~~~C~~C~~~~~~ 298 (456)
|.| ++|......... ..+|.|+.||.....
T Consensus 110 Y~C--p~c~~r~tf~eA~~~~F~Cp~Cg~~L~~ 140 (158)
T TIGR00373 110 FIC--PNMCVRFTFNEAMELNFTCPRCGAMLDY 140 (158)
T ss_pred EEC--CCCCcEeeHHHHHHcCCcCCCCCCEeee
Confidence 567 688744322211 247999999987543
No 399
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=48.63 E-value=1.2e+02 Score=30.13 Aligned_cols=67 Identities=16% Similarity=0.144 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh-----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772 350 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP-----LLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 420 (456)
Q Consensus 350 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp-----~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~ 420 (456)
.-..+.|..+|.+++.+. +++..+...+.+-+++|+ .+-.-.|-||..|..+.++.+|-..+.+|.-
T Consensus 177 y~iaNlL~~iY~Rl~~~~----l~~n~lka~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl 248 (413)
T COG5600 177 YYIANLLFQIYLRLGRFK----LCENFLKASKEVSMPDISEYQKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFL 248 (413)
T ss_pred HHHHHHHHHHHHHhccHH----HHHHHHHhcccccccccchhhhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 334466778899999864 555556666667778887 3344567789999999999999888888765
No 400
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=48.47 E-value=5.9 Score=25.67 Aligned_cols=31 Identities=29% Similarity=0.635 Sum_probs=17.4
Q ss_pred CccCcCcCCCCCC-ccCcCC-CCcccccHHhhh
Q 012772 27 ISRCDGCFASSNL-KKCSAC-QVVWYCGSNCQK 57 (456)
Q Consensus 27 ~~~C~~C~~~~~~-~~C~~C-~~v~yCs~~C~~ 57 (456)
...|..|.++... ..=..| .-|.|||+.|+.
T Consensus 8 ~K~C~~C~rpf~WRKKW~~~Wd~VkYCS~rCR~ 40 (42)
T PF10013_consen 8 SKICPVCGRPFTWRKKWARCWDEVKYCSDRCRR 40 (42)
T ss_pred CCcCcccCCcchHHHHHHHhchhhccHHHHhcc
Confidence 3567777776320 000012 235899999975
No 401
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=48.04 E-value=1.1e+02 Score=22.44 Aligned_cols=38 Identities=18% Similarity=0.057 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 012772 391 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT 428 (456)
Q Consensus 391 ~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~ 428 (456)
.|..+.+-|.-.-..|++++|..+|.+|++.+......
T Consensus 5 ~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~ 42 (75)
T cd02656 5 QAKELIKQAVKEDEDGNYEEALELYKEALDYLLQALKA 42 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcc
Confidence 34455555666667899999999999999988886533
No 402
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=47.71 E-value=14 Score=25.17 Aligned_cols=24 Identities=21% Similarity=0.589 Sum_probs=16.5
Q ss_pred cCCCCCC-CcccCCCCCCeeeccCCCc
Q 012772 270 KDDGCSG-FLLRDSDDKGFTCQQCGLV 295 (456)
Q Consensus 270 ~C~~C~~-~~~~~~~~~~~~C~~C~~~ 295 (456)
.|++|.. .+.+ ..+.|.|.+||..
T Consensus 22 fCP~Cg~~~m~~--~~~r~~C~~Cgyt 46 (50)
T PRK00432 22 FCPRCGSGFMAE--HLDRWHCGKCGYT 46 (50)
T ss_pred cCcCCCcchhec--cCCcEECCCcCCE
Confidence 4678987 3333 2368999999863
No 403
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=47.54 E-value=15 Score=26.67 Aligned_cols=31 Identities=19% Similarity=0.417 Sum_probs=21.7
Q ss_pred CCCCCCCcccCCCCCCeeeccCCCcCCHHHH
Q 012772 271 DDGCSGFLLRDSDDKGFTCQQCGLVRSKEEI 301 (456)
Q Consensus 271 C~~C~~~~~~~~~~~~~~C~~C~~~~~~~~~ 301 (456)
|+.|............|.|+.||...+.+..
T Consensus 31 C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD~n 61 (69)
T PF07282_consen 31 CPRCGHRNKKRRSGRVFTCPNCGFEMDRDVN 61 (69)
T ss_pred ccCcccccccccccceEEcCCCCCEECcHHH
Confidence 6788866554344567999999987765443
No 404
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=47.37 E-value=1.7e+02 Score=29.30 Aligned_cols=93 Identities=15% Similarity=0.089 Sum_probs=56.2
Q ss_pred hhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q 012772 317 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY 396 (456)
Q Consensus 317 ~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~ 396 (456)
...-.|++++|.+-|+..+..-+. .++- +..|.-.-..+|+.+-|..|..++... -|...+...
T Consensus 129 aal~eG~~~~Ar~kfeAMl~dPEt-------RllG-LRgLyleAqr~GareaAr~yAe~Aa~~--------Ap~l~WA~~ 192 (531)
T COG3898 129 AALLEGDYEDARKKFEAMLDDPET-------RLLG-LRGLYLEAQRLGAREAARHYAERAAEK--------APQLPWAAR 192 (531)
T ss_pred HHHhcCchHHHHHHHHHHhcChHH-------HHHh-HHHHHHHHHhcccHHHHHHHHHHHHhh--------ccCCchHHH
Confidence 334569999998877766532111 1111 123333334679999999998876532 233333333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 012772 397 TCGKLEWFLGDTENAIKSMTEAVEILRIT 425 (456)
Q Consensus 397 ~La~~~~~~g~~~eA~~~l~~Al~i~~~~ 425 (456)
-+-.-....|+++.|+++++..++...+.
T Consensus 193 AtLe~r~~~gdWd~AlkLvd~~~~~~vie 221 (531)
T COG3898 193 ATLEARCAAGDWDGALKLVDAQRAAKVIE 221 (531)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHhhc
Confidence 33334457899999999998777665543
No 405
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=47.17 E-value=2.8e+02 Score=28.64 Aligned_cols=49 Identities=14% Similarity=0.173 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 012772 392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 444 (456)
Q Consensus 392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~ 444 (456)
++.+.--|.-.+++.+|.+|+.+.++ +++.-||..|.+.++-..+..++
T Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 824 (831)
T PRK15180 776 AYALKYAALNAMHLRDYTQALQYWQR----LEKVNGPTEPVTRQISTCITALQ 824 (831)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHH----HHhccCCCcchHHHHHHHHHHHh
Confidence 34444444445567889999988765 67889999999998877665544
No 406
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=47.00 E-value=17 Score=35.45 Aligned_cols=100 Identities=11% Similarity=0.060 Sum_probs=71.2
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHHHHh--------h---cCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 012772 314 KTLALTSCGNHQEVVSTYKMIEKLQKK--------L---YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR 382 (456)
Q Consensus 314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~--------~---l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~ 382 (456)
........++++.|..-|.+.++.... . +.+........+.+++..-+.++.+..|+..+..++.
T Consensus 228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~---- 303 (372)
T KOG0546|consen 228 IGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR---- 303 (372)
T ss_pred cchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc----
Confidence 333445667888888877777654331 0 2223344455666777777888888888888766654
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 383 VYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 383 ~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
..+...-.++..+..+....++++|+..++.|...
T Consensus 304 ----~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~ 338 (372)
T KOG0546|consen 304 ----DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQK 338 (372)
T ss_pred ----cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhcc
Confidence 67777788999999999999999999998888653
No 407
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=46.48 E-value=66 Score=27.70 Aligned_cols=109 Identities=14% Similarity=0.014 Sum_probs=60.7
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHHHh-------------hcC-------CC-----------CccHHHHHHHHHHHHH
Q 012772 313 KKTLALTSCGNHQEVVSTYKMIEKLQKK-------------LYH-------PF-----------SVNLMQTREKLIKILM 361 (456)
Q Consensus 313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~-------------~l~-------p~-----------h~~~~~~~~~L~~~~~ 361 (456)
..|.....+|+.++|.+...++...... .++ |- ........-..++-..
T Consensus 7 ~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~~l 86 (155)
T PF10938_consen 7 QKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANELL 86 (155)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHHHH
Confidence 4455566789999999988887665421 111 11 1223344445556677
Q ss_pred HccCHHHHHHHHHHHHHHHHHhcCCCC-hHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012772 362 ELEDWKEALAYCQLTIPVYQRVYPQFH-PLL-GLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 423 (456)
Q Consensus 362 ~~g~~~~A~~~~~~~l~~~e~~~g~~h-p~~-~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~ 423 (456)
+.|+...|.+..+.+-. +..+=... |.- -..-.+.|..+...|++.+|-..|..|++-+.
T Consensus 87 ~~g~~~~A~~~L~~~~~--ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~~lv 148 (155)
T PF10938_consen 87 KKGDKQAAREILKLAGS--EIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALDGLV 148 (155)
T ss_dssp HTT-HHHHHHHHHHTT---EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-E
T ss_pred hCCCHHHHHHHHHHhcc--cceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhcCeE
Confidence 88999888887653321 00111111 111 11334556777889999999999999987654
No 408
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=45.71 E-value=14 Score=20.56 Aligned_cols=21 Identities=19% Similarity=0.433 Sum_probs=13.5
Q ss_pred CCCCCCCcccCCCCCCeeeccCCCc
Q 012772 271 DDGCSGFLLRDSDDKGFTCQQCGLV 295 (456)
Q Consensus 271 C~~C~~~~~~~~~~~~~~C~~C~~~ 295 (456)
|+.|...+.. ++-.|+.||+.
T Consensus 2 Cp~CG~~~~~----~~~fC~~CG~~ 22 (23)
T PF13240_consen 2 CPNCGAEIED----DAKFCPNCGTP 22 (23)
T ss_pred CcccCCCCCC----cCcchhhhCCc
Confidence 6788765532 23459999875
No 409
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.36 E-value=2.7e+02 Score=29.81 Aligned_cols=104 Identities=14% Similarity=0.077 Sum_probs=62.1
Q ss_pred CCCCccHHHHHHHHHHHH-HHccCHHHHHHHHHHHHHHHHHhcC-----CCCh-----HHHHHHHHHHHHHHHcCCHHHH
Q 012772 343 HPFSVNLMQTREKLIKIL-MELEDWKEALAYCQLTIPVYQRVYP-----QFHP-----LLGLQYYTCGKLEWFLGDTENA 411 (456)
Q Consensus 343 ~p~h~~~~~~~~~L~~~~-~~~g~~~~A~~~~~~~l~~~e~~~g-----~~hp-----~~~~~l~~La~~~~~~g~~~eA 411 (456)
+|.-+...-...+|..+- ...|+-+--+...++++.+++.-.| ++.| -++..-++.|.++...|+++-|
T Consensus 749 spe~~~~~lc~~~LI~l~~V~~G~~~vEl~iL~~v~~~~~i~~s~~~~t~~YP~~E~~WLa~~~WN~gvL~~~~~~~~~A 828 (872)
T KOG4814|consen 749 SPEVKERELCSWLLILLENVINGNHEVELRILDRVLKILNINQSSLQDTDGYPQTELEWLATYCWNIGVLYIIKDNKSNA 828 (872)
T ss_pred CCCccHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHhhhheeeeeccchhhH
Confidence 444444444444555444 3345444333333444433332222 3334 4566777889999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 012772 412 IKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA 447 (456)
Q Consensus 412 ~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~ 447 (456)
++...-++++....-|.+.-. ..+...++.....+
T Consensus 829 ~KWc~~~L~fan~vTgme~Y~-~qM~~l~~~l~~~~ 863 (872)
T KOG4814|consen 829 IKWCKHSLGFANMVTGMEGYQ-EQMYSLWESLASSA 863 (872)
T ss_pred HHHHHHHHHHHhhhcchhHHH-HHHHHHHHHHHHHH
Confidence 999999999999888887743 33444444444433
No 410
>PRK11827 hypothetical protein; Provisional
Probab=44.15 E-value=18 Score=25.65 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=20.7
Q ss_pred CCCCCCCcccCCCCCCeeeccCCCcC
Q 012772 271 DDGCSGFLLRDSDDKGFTCQQCGLVR 296 (456)
Q Consensus 271 C~~C~~~~~~~~~~~~~~C~~C~~~~ 296 (456)
|+.|.|.+..+.+.....|..|+...
T Consensus 11 CP~ckg~L~~~~~~~~Lic~~~~laY 36 (60)
T PRK11827 11 CPVCNGKLWYNQEKQELICKLDNLAF 36 (60)
T ss_pred CCCCCCcCeEcCCCCeEECCccCeec
Confidence 67999998777666778999998643
No 411
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=43.94 E-value=3.9e+02 Score=27.75 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012772 389 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 424 (456)
Q Consensus 389 p~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~ 424 (456)
-..+..+++||.++..+|++++|.+.+.+|..++..
T Consensus 616 ~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs 651 (696)
T KOG2471|consen 616 EARGVLFANLAAALALQGHHDQAKSLLTHAATLLHS 651 (696)
T ss_pred HHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhc
Confidence 456779999999999999999999999999998873
No 412
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.52 E-value=93 Score=30.48 Aligned_cols=86 Identities=13% Similarity=0.062 Sum_probs=58.1
Q ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 012772 320 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG 399 (456)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La 399 (456)
+.|-|++|++..++++.+ |+.=.-+....+.++-..|+++++.++-.+.-+.++ ...-.-..-+...|
T Consensus 187 E~g~y~dAEk~A~ralqi--------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr----~s~mlasHNyWH~A 254 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQI--------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR----QSWMLASHNYWHTA 254 (491)
T ss_pred HhccchhHHHHHHhhccC--------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchh----hhhHHHhhhhHHHH
Confidence 456777887776666543 333345566788888888999999998766655544 12222333566677
Q ss_pred HHHHHcCCHHHHHHHHHH
Q 012772 400 KLEWFLGDTENAIKSMTE 417 (456)
Q Consensus 400 ~~~~~~g~~~eA~~~l~~ 417 (456)
..+.+.+.|+.|++.|.+
T Consensus 255 l~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 255 LFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HhhhcccchhHHHHHHHH
Confidence 777888889988888864
No 413
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=43.03 E-value=4.3e+02 Score=27.92 Aligned_cols=61 Identities=18% Similarity=0.239 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hcCCCC
Q 012772 367 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI-THGTNS 430 (456)
Q Consensus 367 ~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~-~~G~~h 430 (456)
..+++++.+++...+.+|+..|. +-|.-+|--+...+++.+|+..+-+|-.++.. .|+.+.
T Consensus 296 ~~~~~l~~~AI~sa~~~Y~n~Hv---YPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~reD 357 (618)
T PF05053_consen 296 PTPLELFNEAISSARTYYNNHHV---YPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNYSRED 357 (618)
T ss_dssp --HHHHHHHHHHHHHHHCTT--S---HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--GGG
T ss_pred CCHHHHHHHHHHHHHHHhcCCcc---ccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcccCccH
Confidence 56899999999999999996664 35666788888999999999999988877665 354444
No 414
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=42.39 E-value=17 Score=20.85 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=12.9
Q ss_pred CCCCCCCcccCCCCCCeeeccCCCc
Q 012772 271 DDGCSGFLLRDSDDKGFTCQQCGLV 295 (456)
Q Consensus 271 C~~C~~~~~~~~~~~~~~C~~C~~~ 295 (456)
|+.|...+. .+.-.|+.||.+
T Consensus 5 Cp~Cg~~~~----~~~~fC~~CG~~ 25 (26)
T PF13248_consen 5 CPNCGAEID----PDAKFCPNCGAK 25 (26)
T ss_pred CcccCCcCC----cccccChhhCCC
Confidence 677876432 223468888865
No 415
>COG1447 CelC Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]
Probab=41.89 E-value=1.8e+02 Score=23.24 Aligned_cols=51 Identities=20% Similarity=0.048 Sum_probs=34.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHh------------------------cCCCCchHHHHHHHHHHHHHHHHh
Q 012772 399 GKLEWFLGDTENAIKSMTEAVEILRIT------------------------HGTNSPFMKELILKLEEAQAEASY 449 (456)
Q Consensus 399 a~~~~~~g~~~eA~~~l~~Al~i~~~~------------------------~G~~h~~~~~~~~~l~~~~~e~~~ 449 (456)
|.-+.+.|++++|...+++|-+.+... ||.||-.+..+...|..---++..
T Consensus 26 Al~~Ak~g~f~~A~~~i~eA~~~l~eAH~~QT~Liq~eA~G~k~~~slllvHAQDHLMtt~~~~~l~ke~i~lyk 100 (105)
T COG1447 26 ALKAAKEGDFEEAEELIQEANDALNEAHHVQTKLIQKEASGEKIEVSLLLVHAQDHLMTTITEKDLIKELIELYK 100 (105)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccceeeeeeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 444456899999999988887766553 677777776666655554444444
No 416
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=41.69 E-value=1.9e+02 Score=27.18 Aligned_cols=64 Identities=11% Similarity=0.027 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC---CCCh-------HHHHHHHHHHHHHHHcCCHHHHHHH
Q 012772 351 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP---QFHP-------LLGLQYYTCGKLEWFLGDTENAIKS 414 (456)
Q Consensus 351 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g---~~hp-------~~~~~l~~La~~~~~~g~~~eA~~~ 414 (456)
.++..=++-+..+|+|++|..-|+.++...+.+-- |..| ..--.+.|..+.++..|+|=++++.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh 252 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEH 252 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHH
Confidence 34445566777899999999999999988776542 2222 2233456667777777777665544
No 417
>PRK05978 hypothetical protein; Provisional
Probab=41.50 E-value=13 Score=31.70 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=23.9
Q ss_pred HhhCCccccCCCCCCCcccCC-CCCCeeeccCCCcCCHH
Q 012772 262 AILEGYRCKDDGCSGFLLRDS-DDKGFTCQQCGLVRSKE 299 (456)
Q Consensus 262 ~l~~~f~C~C~~C~~~~~~~~-~~~~~~C~~C~~~~~~~ 299 (456)
.+..++.|.|++|...-+... -...-.|+.||...+.+
T Consensus 27 ~~~rGl~grCP~CG~G~LF~g~Lkv~~~C~~CG~~~~~~ 65 (148)
T PRK05978 27 AMWRGFRGRCPACGEGKLFRAFLKPVDHCAACGEDFTHH 65 (148)
T ss_pred HHHHHHcCcCCCCCCCcccccccccCCCccccCCccccC
Confidence 455689999999985432111 11233699999866543
No 418
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=41.42 E-value=33 Score=27.79 Aligned_cols=76 Identities=11% Similarity=-0.024 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 012772 349 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH 426 (456)
Q Consensus 349 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~ 426 (456)
++..+...|..|...|+.+.|--++.+.+.+++++ +.||+....-.....+.......+.+.+.+++-...+...|
T Consensus 37 sa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~ki--~~Hpdy~~~~~~~~~~~~~~~~~~~il~~lE~Lk~~L~~rY 112 (115)
T PF08969_consen 37 SANKLLREAEEYRQEGDEEQAYVLYMRYLTLVEKI--PKHPDYKKDKNSYKKLLGKKKLNEVILEELEKLKPSLKERY 112 (115)
T ss_dssp HHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCH--CCSCCCCCTHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--hcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 419
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=41.40 E-value=1.5e+02 Score=22.12 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=23.4
Q ss_pred HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHh
Q 012772 309 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKK 340 (456)
Q Consensus 309 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (456)
..+..+|...-..|++++|+++|..+++.+..
T Consensus 7 i~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 7 HFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 34445555555678999999999999887654
No 420
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=41.12 E-value=18 Score=22.13 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=15.0
Q ss_pred CCCCCCCcccCCCCCCeeeccCCCc
Q 012772 271 DDGCSGFLLRDSDDKGFTCQQCGLV 295 (456)
Q Consensus 271 C~~C~~~~~~~~~~~~~~C~~C~~~ 295 (456)
|..|...+. ....+..+|+.||..
T Consensus 3 C~~Cg~~~~-~~~~~~irC~~CG~R 26 (32)
T PF03604_consen 3 CGECGAEVE-LKPGDPIRCPECGHR 26 (32)
T ss_dssp ESSSSSSE--BSTSSTSSBSSSS-S
T ss_pred CCcCCCeeE-cCCCCcEECCcCCCe
Confidence 458876543 333456899999974
No 421
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=40.51 E-value=2.2e+02 Score=23.81 Aligned_cols=86 Identities=6% Similarity=-0.019 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccH-HHHHHHHHHHHHH-------------ccCHH
Q 012772 302 KKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNL-MQTREKLIKILME-------------LEDWK 367 (456)
Q Consensus 302 ~~~~~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~-~~~~~~L~~~~~~-------------~g~~~ 367 (456)
.-+.+.....+..|..+.+++++.++-+...++..+.....---++.- .....+|..+|-. ....+
T Consensus 25 ~MLyeg~l~~l~~A~~aie~~~i~~k~~~i~ka~~Ii~eL~~~Ld~E~Ggeia~nL~~LY~y~~~rL~~ANl~nd~~~i~ 104 (132)
T COG1516 25 LMLYEGALKFLKRAKEAIEQEDIEEKNESIDKAIDIITELRASLDYEKGGEIAQNLDALYDYMVRRLVQANLKNDASKID 104 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCHhhcchHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence 334466666777888888999999888888888777654322222221 2233333333321 24667
Q ss_pred HHHHHHHHHHHHHHHhcCCC
Q 012772 368 EALAYCQLTIPVYQRVYPQF 387 (456)
Q Consensus 368 ~A~~~~~~~l~~~e~~~g~~ 387 (456)
+.+.+.+.+.+.|+.+.+..
T Consensus 105 eV~~ll~~l~eaW~ei~k~~ 124 (132)
T COG1516 105 EVIGLLRELREAWKEIMKKE 124 (132)
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 78888888888888777643
No 422
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=40.32 E-value=2.8e+02 Score=25.05 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=46.8
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Q 012772 376 TIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS 448 (456)
Q Consensus 376 ~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~~ 448 (456)
++..+....|..-...+...+.||..|. ..+.++|+.+|.+|++.... ++.+-.+++..|+.+.....
T Consensus 125 A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~----~~~~n~eil~sLas~~~~~~ 192 (203)
T PF11207_consen 125 ALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP----DDNFNPEILKSLASIYQKLK 192 (203)
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC----CCCCCHHHHHHHHHHHHHhc
Confidence 3334444667666677888899999886 66789999999999987544 44444566666666654433
No 423
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=40.31 E-value=21 Score=23.54 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=17.0
Q ss_pred CCCCCCCcccCCCCCCeeeccCCCcC
Q 012772 271 DDGCSGFLLRDSDDKGFTCQQCGLVR 296 (456)
Q Consensus 271 C~~C~~~~~~~~~~~~~~C~~C~~~~ 296 (456)
|..|...+... ..+...|+.||..+
T Consensus 5 C~~Cg~~~~~~-~~~~irC~~CG~rI 29 (44)
T smart00659 5 CGECGRENEIK-SKDVVRCRECGYRI 29 (44)
T ss_pred CCCCCCEeecC-CCCceECCCCCceE
Confidence 56888654433 35678999999753
No 424
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=40.09 E-value=1.7e+02 Score=30.00 Aligned_cols=60 Identities=27% Similarity=0.204 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 012772 307 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQL 375 (456)
Q Consensus 307 ~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 375 (456)
++.+..+.|.-+.++|+|.++.-...-+.+ ..| . ..++.-+|-.+....+|++|..+...
T Consensus 461 eian~LaDAEyLysqgey~kc~~ys~WL~~-----iaP-S---~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 461 EIANFLADAEYLYSQGEYHKCYLYSSWLTK-----IAP-S---PQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHH-----hCC-c---HHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 455666777778899999888553333322 233 2 35566788899999999999998764
No 425
>PF10867 DUF2664: Protein of unknown function (DUF2664); InterPro: IPR022614 The proteins in this entry belong to the Herpesviridae UL96 family. Currently no function is known.
Probab=39.45 E-value=57 Score=25.15 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=20.4
Q ss_pred HHHHHHHHhcCCCCchHHH--HHHHHHHHHHHHHh
Q 012772 417 EAVEILRITHGTNSPFMKE--LILKLEEAQAEASY 449 (456)
Q Consensus 417 ~Al~i~~~~~G~~h~~~~~--~~~~l~~~~~e~~~ 449 (456)
+=.+.+...||++||.+.. +.-+=+..+.+..+
T Consensus 8 ~h~~fL~~alG~~HpLt~~Q~ir~~~a~~~~~~~e 42 (89)
T PF10867_consen 8 RHHQFLRRALGEQHPLTSHQGIRTMRAAAREQTRE 42 (89)
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 3446778889999999954 33333334444444
No 426
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=39.38 E-value=5e+02 Score=28.58 Aligned_cols=31 Identities=13% Similarity=0.104 Sum_probs=23.2
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHHHHhh
Q 012772 420 EILRITHGTNSPFMKELILKLEEAQAEASYK 450 (456)
Q Consensus 420 ~i~~~~~G~~h~~~~~~~~~l~~~~~e~~~~ 450 (456)
.-+...||++||.+..+...++.+++++...
T Consensus 328 ~~l~~~~~~~hP~v~~l~~~~~~L~~~~~~l 358 (726)
T PRK09841 328 AEISQLYKKDHPTYRALLEKRQTLEQERKRL 358 (726)
T ss_pred HHHHHHhcccCchHHHHHHHHHHHHHHHHHH
Confidence 4445678999999999888877777665543
No 427
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=39.36 E-value=83 Score=30.37 Aligned_cols=56 Identities=11% Similarity=0.137 Sum_probs=41.8
Q ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 358 KILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
.-....|+.++|..+++.++. +-|.||.+ +.++|...-...+.-+|-.+|-+|+.|
T Consensus 124 ~~~~~~Gk~ekA~~lfeHAla-----laP~~p~~---L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 124 GRSRKDGKLEKAMTLFEHALA-----LAPTNPQI---LIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHHHhccchHHHHHHHHHHHh-----cCCCCHHH---HHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 334567999999999988884 45778875 556677766667788888888887764
No 428
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=38.63 E-value=19 Score=36.17 Aligned_cols=31 Identities=26% Similarity=0.596 Sum_probs=22.0
Q ss_pred cCCCCCCCcccCCCCCCeeeccCCCcCCHHHH
Q 012772 270 KDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEI 301 (456)
Q Consensus 270 ~C~~C~~~~~~~~~~~~~~C~~C~~~~~~~~~ 301 (456)
.|++|.+-+...-.. +|+|.+||........
T Consensus 352 ~Cp~Cg~~m~S~G~~-g~rC~kCg~~~~~~~~ 382 (421)
T COG1571 352 VCPRCGGRMKSAGRN-GFRCKKCGTRARETLI 382 (421)
T ss_pred CCCccCCchhhcCCC-CcccccccccCCcccc
Confidence 478999866544444 8999999987654433
No 429
>PF07840 FadR_C: FadR C-terminal domain; InterPro: IPR008920 Bacteria regulate membrane fluidity by manipulating the relative levels of saturated and unsaturated fatty acids within the phospholipids of their membrane bilayers. In Escherichia coli, the transcription factor, FadR, functions as a switch that co-ordinately regulates the machinery required for fatty acid beta-oxidation and the expression of a key enzyme in fatty acid biosynthesis. This single repressor controls the transcription of the whole fad regulon []. Binding of fadR is specifically inhibited by long chain fatty acyl-CoA compounds. The crystal structure of FadR reveals a two domain dimeric molecule where the N-terminal winged-helix domain binds DNA (IPR000524 from INTERPRO), and the C-terminal domain binds acyl-CoA []. The binding of acyl-CoA to the C-terminal domain results in a conformational change that affects the DNA binding affinity of the N-terminal domain []. FadR is a member of the GntR family of bacterial transcription regulators. The DNA-binding domain is well conserved for this family, whereas the C-terminal effector-binding domain (IPR011711 from INTERPRO) is more variable, and is consequently used to define the GntR subfamilies []. The FadR group is the largest subgroup, and is characterised by an all-helical C-terminal domain composed of 6 to 7 alpha helices []. This entry represents the C-terminal domain of FadR.; GO: 0000062 fatty-acyl-CoA binding, 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0019217 regulation of fatty acid metabolic process; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A.
Probab=38.38 E-value=2.7e+02 Score=24.26 Aligned_cols=57 Identities=16% Similarity=0.141 Sum_probs=41.1
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 012772 384 YPQFHPLLGLQYYTCGKLEWFLGDT--------ENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 443 (456)
Q Consensus 384 ~g~~hp~~~~~l~~La~~~~~~g~~--------~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~ 443 (456)
+-...|..+..++.+-.+|...|.+ +-|..+|++-+++.+.- ++..+..+...-..-
T Consensus 83 ~~S~NpiY~LilNgfk~lY~rvg~~YFs~~~aR~la~~fY~~L~~~~~~~---~~~~v~~~vr~yg~~ 147 (164)
T PF07840_consen 83 FASGNPIYGLILNGFKGLYSRVGRYYFSNPEARELALNFYRELLEACEKG---DYDQVPDVVRQYGIE 147 (164)
T ss_dssp HHTS-HHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHCT----CCGHHHHHHHHHHH
T ss_pred HhcCCCchhhHHcccHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHH
Confidence 3478999999999999999988764 55777888877777664 676676666554443
No 430
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=38.21 E-value=17 Score=23.70 Aligned_cols=28 Identities=29% Similarity=0.567 Sum_probs=18.5
Q ss_pred cCCCCCCCc-ccCCCCCCeeeccCCCcCC
Q 012772 270 KDDGCSGFL-LRDSDDKGFTCQQCGLVRS 297 (456)
Q Consensus 270 ~C~~C~~~~-~~~~~~~~~~C~~C~~~~~ 297 (456)
.|+.|.... ..+.....+.|..||..++
T Consensus 2 ~Cp~Cg~~~~~~D~~~g~~vC~~CG~Vl~ 30 (43)
T PF08271_consen 2 KCPNCGSKEIVFDPERGELVCPNCGLVLE 30 (43)
T ss_dssp SBTTTSSSEEEEETTTTEEEETTT-BBEE
T ss_pred CCcCCcCCceEEcCCCCeEECCCCCCEee
Confidence 367888653 3445566789999997654
No 431
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=38.03 E-value=3.5e+02 Score=25.44 Aligned_cols=100 Identities=15% Similarity=0.117 Sum_probs=55.1
Q ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHH-HHHHHHHHHHHHHHH-hcCCCC
Q 012772 311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWK-EALAYCQLTIPVYQR-VYPQFH 388 (456)
Q Consensus 311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~-~A~~~~~~~l~~~e~-~~g~~h 388 (456)
+..-|..+.+.|++..|.++..-+++.+++.-.+.+ -....+|+.++...+.=+ +-..+..+++.--+. -.+..|
T Consensus 13 L~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~---~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gd 89 (260)
T PF04190_consen 13 LYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVD---EESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGD 89 (260)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---S---HHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--
T ss_pred HHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCC
Confidence 344445556677788887776666666555222222 233456777666654222 345555666554411 112234
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 012772 389 PLLGLQYYTCGKLEWFLGDTENAIKSMT 416 (456)
Q Consensus 389 p~~~~~l~~La~~~~~~g~~~eA~~~l~ 416 (456)
|. ....+|..+++.|++.+|+.++-
T Consensus 90 p~---LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 90 PE---LHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp HH---HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HH---HHHHHHHHHHhhccHHHHHHHHH
Confidence 43 56778999999999999999874
No 432
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=37.03 E-value=20 Score=22.49 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=17.3
Q ss_pred CCCCCCCcccCCCCCCeeeccCCCcC
Q 012772 271 DDGCSGFLLRDSDDKGFTCQQCGLVR 296 (456)
Q Consensus 271 C~~C~~~~~~~~~~~~~~C~~C~~~~ 296 (456)
|..|.+. ....+...+.|.+||+..
T Consensus 11 C~~C~~~-~~~~~dG~~yC~~cG~~~ 35 (36)
T PF11781_consen 11 CPVCGSR-WFYSDDGFYYCDRCGHQS 35 (36)
T ss_pred CCCCCCe-EeEccCCEEEhhhCceEc
Confidence 5678876 444455668899999754
No 433
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=36.91 E-value=2.7e+02 Score=23.88 Aligned_cols=51 Identities=10% Similarity=0.076 Sum_probs=34.8
Q ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 012772 319 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTI 377 (456)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l 377 (456)
...++.+++..++..+ ++|.|..+.+ ..--+.+++..|+|.+|+...+.+.
T Consensus 21 L~~~d~~D~e~lLdAL-----rvLrP~~~e~---d~~dg~l~i~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 21 LRSADPYDAQAMLDAL-----RVLRPNLKEL---DMFDGWLLIARGNYDEAARILRELL 71 (153)
T ss_pred HhcCCHHHHHHHHHHH-----HHhCCCcccc---chhHHHHHHHcCCHHHHHHHHHhhh
Confidence 3456777777654433 5677776543 2345667888999999999987654
No 434
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=36.52 E-value=21 Score=23.65 Aligned_cols=28 Identities=18% Similarity=0.475 Sum_probs=17.7
Q ss_pred CCccccCCCCCCC-cccCCCCCCeeeccCCC
Q 012772 265 EGYRCKDDGCSGF-LLRDSDDKGFTCQQCGL 294 (456)
Q Consensus 265 ~~f~C~C~~C~~~-~~~~~~~~~~~C~~C~~ 294 (456)
++|. |++|... .........|.|..|++
T Consensus 17 ~g~~--CP~Cg~~~~~~~~~~~~~~C~~C~~ 45 (46)
T PF12760_consen 17 DGFV--CPHCGSTKHYRLKTRGRYRCKACRK 45 (46)
T ss_pred CCCC--CCCCCCeeeEEeCCCCeEECCCCCC
Confidence 4676 4688864 11222346799999985
No 435
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=36.38 E-value=4.2e+02 Score=25.88 Aligned_cols=38 Identities=24% Similarity=0.240 Sum_probs=30.5
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 012772 388 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 425 (456)
Q Consensus 388 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~ 425 (456)
+-..|..++.+|..+...+++.+|+..|++|...++..
T Consensus 247 ~~~~a~a~~~~a~~~~e~~~~G~aia~L~~A~~~~~~~ 284 (345)
T cd09034 247 CIFKALAYYYHGLKLDEANKIGEAIARLQAALELLKES 284 (345)
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888889999999999988877665
No 436
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=36.36 E-value=25 Score=21.79 Aligned_cols=24 Identities=33% Similarity=0.746 Sum_probs=12.8
Q ss_pred CCCCCCCcccC----CCCCCeeeccCCC
Q 012772 271 DDGCSGFLLRD----SDDKGFTCQQCGL 294 (456)
Q Consensus 271 C~~C~~~~~~~----~~~~~~~C~~C~~ 294 (456)
|+.|.+++... ++...+.|+.||.
T Consensus 3 C~~CG~~l~~~ip~gd~r~R~vC~~Cg~ 30 (34)
T PF14803_consen 3 CPQCGGPLERRIPEGDDRERLVCPACGF 30 (34)
T ss_dssp -TTT--B-EEE--TT-SS-EEEETTTTE
T ss_pred cccccChhhhhcCCCCCccceECCCCCC
Confidence 78998876432 2345688999985
No 437
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=35.74 E-value=1.8e+02 Score=21.54 Aligned_cols=35 Identities=17% Similarity=0.078 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhc
Q 012772 308 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLY 342 (456)
Q Consensus 308 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l 342 (456)
...++..|......|+|++|..+|...+......+
T Consensus 6 A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~ 40 (75)
T cd02677 6 AAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGV 40 (75)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 34455555666667999999999999988776644
No 438
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=35.48 E-value=3.7e+02 Score=24.94 Aligned_cols=92 Identities=14% Similarity=0.061 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHH
Q 012772 307 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE--------DWKEALAYCQLTIP 378 (456)
Q Consensus 307 ~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g--------~~~~A~~~~~~~l~ 378 (456)
++..+.+.+-.+..+|+|++|...++..-+.....--+....++.-.+.+...+.+.. .-++.+...-+.--
T Consensus 4 eLd~~sd~~lqlvk~~~yeeA~q~l~~fs~~f~~~~~~~~~~t~e~iralT~t~~~a~~al~~~~~~~~e~~~~at~~RL 83 (232)
T PF09577_consen 4 ELDQLSDEALQLVKQGKYEEAKQLLEYFSEQFTSVDFKGRPLTMEEIRALTETIEEAKKALTSVSMSEEEKIRAATQFRL 83 (232)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhhccccccccCHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 4555566666777899999999877766554333212222255666666666555431 22333344444444
Q ss_pred HHHHhcCCCChHHHHHHHHH
Q 012772 379 VYQRVYPQFHPLLGLQYYTC 398 (456)
Q Consensus 379 ~~e~~~g~~hp~~~~~l~~L 398 (456)
....+-.+.+|.=.....-+
T Consensus 84 avDAl~~~~qPLW~~~e~~i 103 (232)
T PF09577_consen 84 AVDALTHKHQPLWLQYEKPI 103 (232)
T ss_pred HHHHhcCCCCCcHHHHHHHH
Confidence 45556667777654444444
No 439
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=35.44 E-value=30 Score=19.98 Aligned_cols=20 Identities=30% Similarity=0.582 Sum_probs=15.1
Q ss_pred cCcCcCCCC--CCccCcCCCCc
Q 012772 29 RCDGCFASS--NLKKCSACQVV 48 (456)
Q Consensus 29 ~C~~C~~~~--~~~~C~~C~~v 48 (456)
.|-.|.+.. .-..|+.|++.
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~ 23 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYD 23 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCC
Confidence 477888874 45789999875
No 440
>COG2715 SpmA Uncharacterized membrane protein, required for spore maturation in B.subtilis. [General function prediction only]
Probab=35.41 E-value=3.1e+02 Score=24.15 Aligned_cols=76 Identities=21% Similarity=0.207 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC---CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 012772 350 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP---QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH 426 (456)
Q Consensus 350 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g---~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~ 426 (456)
+-.+-.++.+--+.|-.+.=..+++ .+.++++| |+||..|..+.|+.--.+-+|+- |-.+=-||.+-++..-
T Consensus 48 m~lWlG~MrIaE~aGLvd~larl~r---P~~~~LFpdVpp~hpamG~i~~N~sAN~lGLgNA--ATPlGlKAMeelqeiN 122 (206)
T COG2715 48 MALWLGLMRIAEKAGLVDLLARLLR---PLLRRLFPDVPPGHPAMGYILMNMSANMLGLGNA--ATPLGLKAMEELQEIN 122 (206)
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHH---HHHHHhCCCCCcCCchHHHHHHHHHHHhcCCCcc--cCchhHHHHHHHHHhC
Confidence 3344445555555565544444433 35566665 89999999999997765555553 2233335555555554
Q ss_pred CCCC
Q 012772 427 GTNS 430 (456)
Q Consensus 427 G~~h 430 (456)
|..+
T Consensus 123 ~~ks 126 (206)
T COG2715 123 PNKS 126 (206)
T ss_pred CCCC
Confidence 4444
No 441
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=35.38 E-value=61 Score=22.20 Aligned_cols=25 Identities=16% Similarity=0.317 Sum_probs=15.4
Q ss_pred eeccCCCcCCHHHHHHHHHHHHHHH
Q 012772 288 TCQQCGLVRSKEEIKKIASEVNILS 312 (456)
Q Consensus 288 ~C~~C~~~~~~~~~~~~~~~~~~l~ 312 (456)
.||-|+..++.+....++.+....+
T Consensus 22 ~CPlC~r~l~~e~~~~li~~~~~~i 46 (54)
T PF04423_consen 22 CCPLCGRPLDEEHRQELIKKYKSEI 46 (54)
T ss_dssp E-TTT--EE-HHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 8999999999888777766555443
No 442
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=35.35 E-value=2.4e+02 Score=22.82 Aligned_cols=74 Identities=15% Similarity=0.155 Sum_probs=53.8
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCC-----CChHHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 012772 357 IKILMELEDWKEALAYCQLTIPVYQRVYPQ-----FHPLLGLQYYTCGKL--EWFLGDTENAIKSMTEAVEILRITHGTN 429 (456)
Q Consensus 357 ~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~-----~hp~~~~~l~~La~~--~~~~g~~~eA~~~l~~Al~i~~~~~G~~ 429 (456)
+......++|++|.+...++...+++.-.. +|-.+-..-..++++ |...++..++..-+..+...++...-.+
T Consensus 35 i~~~i~~~dW~~A~~~~~~l~~~W~k~~~~~~~~~~h~eid~i~~sl~rl~~~i~~~dk~~~l~el~~lk~~i~~i~~~e 114 (121)
T PF14276_consen 35 IEEAIENEDWEKAYKETEELEKEWDKNKKRWSILIEHQEIDNIDISLARLKGYIEAKDKSESLAELAELKELIEHIPEME 114 (121)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhhchheeeeecHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 344667799999999999999998876653 677777777777765 4456777888888777777666554433
Q ss_pred C
Q 012772 430 S 430 (456)
Q Consensus 430 h 430 (456)
-
T Consensus 115 ~ 115 (121)
T PF14276_consen 115 K 115 (121)
T ss_pred c
Confidence 3
No 443
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=35.19 E-value=14 Score=22.97 Aligned_cols=25 Identities=24% Similarity=0.648 Sum_probs=16.7
Q ss_pred CCCCCCCcccCCCCCC-eeeccCCCc
Q 012772 271 DDGCSGFLLRDSDDKG-FTCQQCGLV 295 (456)
Q Consensus 271 C~~C~~~~~~~~~~~~-~~C~~C~~~ 295 (456)
|+.|.+.+.|..+... ..|..|+..
T Consensus 4 Cp~C~nlL~p~~~~~~~~~C~~C~Y~ 29 (35)
T PF02150_consen 4 CPECGNLLYPKEDKEKRVACRTCGYE 29 (35)
T ss_dssp ETTTTSBEEEEEETTTTEEESSSS-E
T ss_pred CCCCCccceEcCCCccCcCCCCCCCc
Confidence 7899988877644322 269999864
No 444
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=35.13 E-value=1.6e+02 Score=29.40 Aligned_cols=94 Identities=14% Similarity=0.030 Sum_probs=51.4
Q ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q 012772 318 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME---LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 394 (456)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~---~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~ 394 (456)
|.+-.+|+..+++.+.+..+- ...-.....+....|-++.+ .|+.++|++....++..- +...|+ +
T Consensus 151 yRdiqdydamI~Lve~l~~~p----~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~----~~~~~d---~ 219 (374)
T PF13281_consen 151 YRDIQDYDAMIKLVETLEALP----TCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD----ENPDPD---T 219 (374)
T ss_pred hhhhhhHHHHHHHHHHhhccC----ccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc----CCCChH---H
Confidence 344456777777666554321 01111233445566666776 899999999887764322 234444 3
Q ss_pred HHHHHHHHHH---------cCCHHHHHHHHHHHHHHH
Q 012772 395 YYTCGKLEWF---------LGDTENAIKSMTEAVEIL 422 (456)
Q Consensus 395 l~~La~~~~~---------~g~~~eA~~~l~~Al~i~ 422 (456)
+--+|.+|-. ...+++|+..|.||.++-
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~ 256 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE 256 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence 3344555432 123567777777766543
No 445
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=35.12 E-value=2.5e+02 Score=23.02 Aligned_cols=83 Identities=5% Similarity=-0.015 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccH-HHHHHHHHHHHHH-------------ccCHH
Q 012772 302 KKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNL-MQTREKLIKILME-------------LEDWK 367 (456)
Q Consensus 302 ~~~~~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~-~~~~~~L~~~~~~-------------~g~~~ 367 (456)
.-+.+.+-..+..|.....+|+++++-....++..+.....+.-+... ..+-.+|..+|.. ...++
T Consensus 25 ~mLydg~i~~l~~a~~ai~~~d~~~~~~~i~ka~~Ii~eL~~~Ld~e~ggeiA~nL~~LY~y~~~~L~~An~~~d~~~l~ 104 (124)
T TIGR00208 25 LMLYNGCLKFIRLAAQAIENDDIERKNENLIKAQNIIQELNFTLDREKNIELSASLGALYDYMYRRLVQANIKNDTSKLA 104 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHhhCCHHHHH
Confidence 334455555566777777889998887777777666544333333322 2444455555542 23566
Q ss_pred HHHHHHHHHHHHHHHhc
Q 012772 368 EALAYCQLTIPVYQRVY 384 (456)
Q Consensus 368 ~A~~~~~~~l~~~e~~~ 384 (456)
++..+...+.+.|+.+.
T Consensus 105 ev~~~l~~Lr~aW~e~~ 121 (124)
T TIGR00208 105 EVEGYVRDFRDAWKEAI 121 (124)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 77777777777766554
No 446
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.81 E-value=3e+02 Score=30.46 Aligned_cols=24 Identities=21% Similarity=0.106 Sum_probs=18.0
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHH
Q 012772 312 SKKTLALTSCGNHQEVVSTYKMIE 335 (456)
Q Consensus 312 ~~~a~~~~~~g~~~~a~~~~~~~~ 335 (456)
.+.++-++.+|++++|...|-+.+
T Consensus 372 ~kYgd~Ly~Kgdf~~A~~qYI~tI 395 (933)
T KOG2114|consen 372 RKYGDYLYGKGDFDEATDQYIETI 395 (933)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHc
Confidence 345666788999999988876654
No 447
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=34.37 E-value=2.4e+02 Score=27.73 Aligned_cols=111 Identities=11% Similarity=0.054 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 012772 303 KIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR 382 (456)
Q Consensus 303 ~~~~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~ 382 (456)
++.+|+..+..--..+-+.|+...-...++.+..... =|.-| ..+..+..-++-|..-.+|..|...|.+.|..-.
T Consensus 37 ew~kEm~k~PfFMt~~p~~gd~~~~~~~LqslK~da~--E~ep~-E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc- 112 (390)
T KOG0551|consen 37 EWEKEMNKVPFFMTRAPSEGDPNPDNVCLQSLKADAE--EGEPH-EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKC- 112 (390)
T ss_pred HHHHHHhcCcHHHhcCCCCCCCCccHHHHHHhhhccc--cCChH-HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcC-
Confidence 3344555443333334455665544444444432210 01112 2666667777778888899999999888775321
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772 383 VYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 420 (456)
Q Consensus 383 ~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~ 420 (456)
++--.-+..|.|=|-....+|+|..|+.=-.+|+.
T Consensus 113 ---~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~ 147 (390)
T KOG0551|consen 113 ---ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK 147 (390)
T ss_pred ---CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334455667777778888888777665555443
No 448
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=33.65 E-value=1.2e+02 Score=28.48 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHH
Q 012772 298 KEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQ 338 (456)
Q Consensus 298 ~~~~~~~~~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~ 338 (456)
.+.+..+.++|..++.+|..+..+|+.++|..+...+..+.
T Consensus 122 ~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk 162 (254)
T PF03194_consen 122 AEKIDELDEKIGELLKEAEELGEEGDVDEAQKLMEEVEKLK 162 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 45677777889999999999999999999999888877664
No 449
>PF05030 SSXT: SSXT protein (N-terminal region); InterPro: IPR007726 SSXT (also known as SYT or SS18) appears to function synergistically with RBM14 as a transcriptional coactivator []. The SSXT protein is involved in synovial sarcoma in humans. A SYT-SSX fusion gene resulting from the chromosomal translocation t(X;18) (p11;q11) is characteristic of synovial sarcomas. This translocation fuses the SSXT (SYT) gene from chromosome 18 to either of two homologous genes at Xp11, SSX1 or SSX2 []. This entry also includes SS18-like protein 1, a transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons [],[].
Probab=33.49 E-value=1.9e+02 Score=20.96 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=32.9
Q ss_pred CcCCHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHH
Q 012772 294 LVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKM 333 (456)
Q Consensus 294 ~~~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~~a~~~~~~ 333 (456)
..++.+.+.++++|=..++..+..+...|+..|+....+.
T Consensus 4 ~~~~~~~IQk~LdEN~~LI~~I~e~qn~Gr~~Ec~qyq~~ 43 (65)
T PF05030_consen 4 AQITTEQIQKMLDENDQLIQCIQEYQNKGRAQECVQYQQI 43 (65)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3567889999998888889888899999999998875433
No 450
>PF13041 PPR_2: PPR repeat family
Probab=32.87 E-value=1e+02 Score=20.28 Aligned_cols=27 Identities=26% Similarity=0.135 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012772 393 LQYYTCGKLEWFLGDTENAIKSMTEAV 419 (456)
Q Consensus 393 ~~l~~La~~~~~~g~~~eA~~~l~~Al 419 (456)
..++.|=..+...|++++|.++|++-.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~ 30 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMK 30 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456777788889999999999998866
No 451
>PF08772 NOB1_Zn_bind: Nin one binding (NOB1) Zn-ribbon like; InterPro: IPR014881 This entry corresponds to a zinc ribbon and is found on the RNA binding protein NOB1. ; PDB: 2CON_A.
Probab=32.86 E-value=21 Score=26.41 Aligned_cols=21 Identities=29% Similarity=0.784 Sum_probs=9.0
Q ss_pred CccCcCcCCC---CCCccCcCCCC
Q 012772 27 ISRCDGCFAS---SNLKKCSACQV 47 (456)
Q Consensus 27 ~~~C~~C~~~---~~~~~C~~C~~ 47 (456)
...|+.||+. ....-||.|+-
T Consensus 9 vlrC~aCf~~t~~~~k~FCp~CGn 32 (73)
T PF08772_consen 9 VLRCHACFKITKDMTKQFCPKCGN 32 (73)
T ss_dssp EEE-SSS--EES-SS--S-SSS--
T ss_pred eEEccccccCcCCCCceeCcccCC
Confidence 3579999987 24566777765
No 452
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=32.79 E-value=2.6e+02 Score=23.67 Aligned_cols=67 Identities=12% Similarity=0.073 Sum_probs=39.4
Q ss_pred HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCcc-HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 012772 309 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN-LMQTREKLIKILMELEDWKEALAYCQLTIPV 379 (456)
Q Consensus 309 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~-~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~ 379 (456)
++.+..|..+..+.+-++..+ =+.+.+.++...|+. .-+..+-|+..+.++++|+.++.|....|+.
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~----GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQE----GIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHHHHHHHHcccchHHHHH----hHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 344555666554444333322 122233333323332 4456677888899999999999999887753
No 453
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=32.77 E-value=36 Score=23.98 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=11.6
Q ss_pred CCCCCCCcccCCCCCCeeeccCCC
Q 012772 271 DDGCSGFLLRDSDDKGFTCQQCGL 294 (456)
Q Consensus 271 C~~C~~~~~~~~~~~~~~C~~C~~ 294 (456)
|..|...+.+......|.|+.||.
T Consensus 10 CtSCg~~i~~~~~~~~F~CPnCG~ 33 (59)
T PRK14890 10 CTSCGIEIAPREKAVKFLCPNCGE 33 (59)
T ss_pred ccCCCCcccCCCccCEeeCCCCCC
Confidence 345555444433334455555554
No 454
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=32.68 E-value=3.7e+02 Score=25.50 Aligned_cols=88 Identities=18% Similarity=0.203 Sum_probs=39.0
Q ss_pred CChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 012772 322 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKL 401 (456)
Q Consensus 322 g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~ 401 (456)
++.+.|.++|++.++. + |.+..+ ...-+..++..++.+.|..++++++.. ++. .......+......
T Consensus 50 ~d~~~A~~Ife~glk~----f-~~~~~~---~~~Y~~~l~~~~d~~~aR~lfer~i~~----l~~-~~~~~~iw~~~i~f 116 (280)
T PF05843_consen 50 KDPKRARKIFERGLKK----F-PSDPDF---WLEYLDFLIKLNDINNARALFERAISS----LPK-EKQSKKIWKKFIEF 116 (280)
T ss_dssp S-HHHHHHHHHHHHHH----H-TT-HHH---HHHHHHHHHHTT-HHHHHHHHHHHCCT----SSC-HHHCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH----C-CCCHHH---HHHHHHHHHHhCcHHHHHHHHHHHHHh----cCc-hhHHHHHHHHHHHH
Confidence 4444466666665533 2 122221 122223344556666666665555432 111 11123344444444
Q ss_pred HHHcCCHHHHHHHHHHHHHHH
Q 012772 402 EWFLGDTENAIKSMTEAVEIL 422 (456)
Q Consensus 402 ~~~~g~~~eA~~~l~~Al~i~ 422 (456)
-...|+++...++.+++.+.+
T Consensus 117 E~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 117 ESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp HHHHS-HHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 455566666666666666543
No 455
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=32.55 E-value=25 Score=31.08 Aligned_cols=26 Identities=19% Similarity=0.530 Sum_probs=20.0
Q ss_pred cccCCCCCCCcccCCCCCCeeeccCCCc
Q 012772 268 RCKDDGCSGFLLRDSDDKGFTCQQCGLV 295 (456)
Q Consensus 268 ~C~C~~C~~~~~~~~~~~~~~C~~C~~~ 295 (456)
.=.|++|..++.+ ......|+.||..
T Consensus 149 ~A~CsrC~~~L~~--~~~~l~Cp~Cg~t 174 (188)
T COG1096 149 YARCSRCRAPLVK--KGNMLKCPNCGNT 174 (188)
T ss_pred EEEccCCCcceEE--cCcEEECCCCCCE
Confidence 4457899998877 4556899999963
No 456
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=32.46 E-value=21 Score=24.45 Aligned_cols=27 Identities=26% Similarity=0.819 Sum_probs=14.8
Q ss_pred cCcCcCCCC----------CCccCcCCCCcccccHHhhh
Q 012772 29 RCDGCFASS----------NLKKCSACQVVWYCGSNCQK 57 (456)
Q Consensus 29 ~C~~C~~~~----------~~~~C~~C~~v~yCs~~C~~ 57 (456)
.|..|.++. ..++|+.|+. .|| -+|-.
T Consensus 1 ~CfgC~~~~~~~~~~~~~~~~y~C~~C~~-~FC-~dCD~ 37 (51)
T PF07975_consen 1 YCFGCQKPFPDGPEKKADSSRYRCPKCKN-HFC-IDCDV 37 (51)
T ss_dssp EETTTTEE-TTS-------EEE--TTTT---B--HHHHH
T ss_pred CCccCCCCCCCcccccccCCeEECCCCCC-ccc-cCcCh
Confidence 367777762 2478999999 599 67853
No 457
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=32.45 E-value=20 Score=34.42 Aligned_cols=30 Identities=13% Similarity=0.234 Sum_probs=19.8
Q ss_pred cccCCCCCCCcccCC-CCCCeeeccCCCcCC
Q 012772 268 RCKDDGCSGFLLRDS-DDKGFTCQQCGLVRS 297 (456)
Q Consensus 268 ~C~C~~C~~~~~~~~-~~~~~~C~~C~~~~~ 297 (456)
.-.|.+|.......+ ....|.|++||..+.
T Consensus 246 ~TAC~rC~t~y~le~A~~~~wrCpkCGg~ik 276 (403)
T COG1379 246 LTACSRCYTRYSLEEAKSLRWRCPKCGGKIK 276 (403)
T ss_pred HHHHHHhhhccCcchhhhhcccCcccccchh
Confidence 456789985443222 245699999998543
No 458
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=32.06 E-value=5.6e+02 Score=26.09 Aligned_cols=117 Identities=10% Similarity=-0.074 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Q 012772 305 ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY 384 (456)
Q Consensus 305 ~~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~ 384 (456)
+..++++..+|..+..+.++..|-.+..++.--. ..+-+-..+..+...++.++-+-+.--.+..+..+.+.... -|
T Consensus 270 ~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc--~k~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~s-ey 346 (482)
T KOG4322|consen 270 QQSVENLCRFAHILHADEQVSYAYALLNKLMVQC--DKGCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRS-EY 346 (482)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHH-Hh
Confidence 3445666667777766666666666555443211 12222233445555555555554544455555555444332 22
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 012772 385 PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 425 (456)
Q Consensus 385 g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~ 425 (456)
.-+. ..+..-..||.....+|..+.|...++.|+..+..-
T Consensus 347 ~ldy-l~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~ 386 (482)
T KOG4322|consen 347 SLDY-LEANENLDLALEHLALGSPKAALPLLHTAVHLILVQ 386 (482)
T ss_pred ccch-hhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhc
Confidence 2222 234455566666667777777777777777665553
No 459
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=31.89 E-value=29 Score=30.60 Aligned_cols=30 Identities=33% Similarity=0.633 Sum_probs=19.4
Q ss_pred CccccCCCCCCCcccCCC-CCCeeeccCCCcCC
Q 012772 266 GYRCKDDGCSGFLLRDSD-DKGFTCQQCGLVRS 297 (456)
Q Consensus 266 ~f~C~C~~C~~~~~~~~~-~~~~~C~~C~~~~~ 297 (456)
.|.| +.|.-....+.. ..+|.|+.||..+.
T Consensus 113 ~y~C--~~~~~r~sfdeA~~~~F~Cp~Cg~~L~ 143 (176)
T COG1675 113 YYVC--PNCHVKYSFDEAMELGFTCPKCGEDLE 143 (176)
T ss_pred ceeC--CCCCCcccHHHHHHhCCCCCCCCchhh
Confidence 4788 677755433321 34699999997654
No 460
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=31.57 E-value=3.7e+02 Score=25.51 Aligned_cols=82 Identities=16% Similarity=0.077 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 012772 324 HQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME-LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE 402 (456)
Q Consensus 324 ~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~-~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~ 402 (456)
.+.|..+++++.+ ..+.++ .++...|.+-.. .++.+.|...+++.+.. ||. .+.+-. .-...+
T Consensus 17 ~~~aR~vF~~a~~-----~~~~~~---~vy~~~A~~E~~~~~d~~~A~~Ife~glk~----f~~-~~~~~~---~Y~~~l 80 (280)
T PF05843_consen 17 IEAARKVFKRARK-----DKRCTY---HVYVAYALMEYYCNKDPKRARKIFERGLKK----FPS-DPDFWL---EYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHC-----CCCS-T---HHHHHHHHHHHHTCS-HHHHHHHHHHHHHH----HTT--HHHHH---HHHHHH
T ss_pred hHHHHHHHHHHHc-----CCCCCH---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH----CCC-CHHHHH---HHHHHH
Confidence 5677777777741 122233 334455556444 56766799999988853 443 333333 333455
Q ss_pred HHcCCHHHHHHHHHHHHHH
Q 012772 403 WFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 403 ~~~g~~~eA~~~l~~Al~i 421 (456)
...|+.+.|+.+|++|+..
T Consensus 81 ~~~~d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS 99 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT
T ss_pred HHhCcHHHHHHHHHHHHHh
Confidence 6789999999999988653
No 461
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=31.44 E-value=2.8e+02 Score=28.66 Aligned_cols=67 Identities=18% Similarity=0.226 Sum_probs=46.7
Q ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 012772 358 KILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 425 (456)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~ 425 (456)
...++-++|++...-.+++-.++++.+-.+|..+.+ ..+.+..-+......-|..++.+|+.++-+.
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itL-WlkYae~Emknk~vNhARNv~dRAvt~lPRV 140 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDYRNITL-WLKYAEFEMKNKQVNHARNVWDRAVTILPRV 140 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchH-HHHHHHHHHhhhhHhHHHHHHHHHHHhcchH
Confidence 345666777777777777888888777766655433 3445666666777888888888888876553
No 462
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=31.39 E-value=23 Score=24.73 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=16.0
Q ss_pred CccCcCcCCCCCCccCcCCCCcccccHHhhh
Q 012772 27 ISRCDGCFASSNLKKCSACQVVWYCGSNCQK 57 (456)
Q Consensus 27 ~~~C~~C~~~~~~~~C~~C~~v~yCs~~C~~ 57 (456)
..||--|.+..+.- -.+||++|+.
T Consensus 8 H~HC~VCg~aIp~d-------e~~CSe~C~e 31 (64)
T COG4068 8 HRHCVVCGKAIPPD-------EQVCSEECGE 31 (64)
T ss_pred CccccccCCcCCCc-------cchHHHHHHH
Confidence 46777777763321 1589999984
No 463
>KOG2061 consensus Uncharacterized MYND Zn-finger protein [General function prediction only]
Probab=31.14 E-value=18 Score=35.32 Aligned_cols=48 Identities=33% Similarity=0.682 Sum_probs=40.1
Q ss_pred CccCcCcCCCCCCccCcCCCCcccccHHhhhhcHH-HhHHhchhhHhchh
Q 012772 27 ISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWK-LHRLECQVLSRLDK 75 (456)
Q Consensus 27 ~~~C~~C~~~~~~~~C~~C~~v~yCs~~C~~~~~~-~H~~EC~~l~~l~~ 75 (456)
...|..|... ....|..|+.+.|||+.=|..+|. .|+-+|.-...+..
T Consensus 136 ~~~~~~~~~~-a~~~~~~~~~a~~~S~~~q~~d~~~~~~~a~aq~~~~~~ 184 (362)
T KOG2061|consen 136 ADLCGSCGCS-APAACSPCKAAAYCSKKHQSLDWPKGHKDACAQPSTLGE 184 (362)
T ss_pred cchhccCccc-CcccccccchhhhcCchhhcccccccccccccCcccccc
Confidence 4678888777 778899999999999999999998 69999987765543
No 464
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=30.98 E-value=4.9e+02 Score=26.82 Aligned_cols=113 Identities=11% Similarity=0.016 Sum_probs=58.4
Q ss_pred HHhhhhcCChHHHHHHHHHHHHHHHh---hcCCCCcc----HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 012772 315 TLALTSCGNHQEVVSTYKMIEKLQKK---LYHPFSVN----LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 387 (456)
Q Consensus 315 a~~~~~~g~~~~a~~~~~~~~~~~~~---~l~p~h~~----~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~ 387 (456)
|.....++.+++|++.+.....-... .+=..|.. ..-.-+..|..++..|+|.++.....+++. ++++.+
T Consensus 86 ~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~---~llkrE 162 (549)
T PF07079_consen 86 ALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIE---RLLKRE 162 (549)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHH---HHhhhh
Confidence 33445667888887765544332111 11111111 112224566788899999999999888764 456655
Q ss_pred ChHHHHHHHH----HHHHHHH---c-CCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772 388 HPLLGLQYYT----CGKLEWF---L-GDTENAIKSMTEAVEILRITHGTNS 430 (456)
Q Consensus 388 hp~~~~~l~~----La~~~~~---~-g~~~eA~~~l~~Al~i~~~~~G~~h 430 (456)
+---.-.++. ||+.|.- . -..+-+-++|+-++--+++.+|-|-
T Consensus 163 ~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~ 213 (549)
T PF07079_consen 163 CEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQ 213 (549)
T ss_pred hcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhh
Confidence 4433333333 4555542 1 2223344455555544444444443
No 465
>PRK05685 fliS flagellar protein FliS; Validated
Probab=30.61 E-value=2.7e+02 Score=23.16 Aligned_cols=46 Identities=15% Similarity=0.074 Sum_probs=30.1
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH-HHHHHHHHHHH
Q 012772 357 IKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL-GLQYYTCGKLE 402 (456)
Q Consensus 357 ~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~-~~~l~~La~~~ 402 (456)
+...+..|+++++.....++..+...+-..-.+.. |-.-.+|..+|
T Consensus 42 A~~ai~~~~~~~~~~~l~ka~~Ii~eL~~sLd~e~ggeiA~~L~~LY 88 (132)
T PRK05685 42 AKLAIEQGDIEAKGEYLSKAINIINGLRNSLDMEKGGEVAKNLSALY 88 (132)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHH
Confidence 34456779999999999999998877766444433 23333444444
No 466
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=30.38 E-value=34 Score=21.03 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=17.3
Q ss_pred CCCCCCCcccCCCCCCeeeccCCCc
Q 012772 271 DDGCSGFLLRDSDDKGFTCQQCGLV 295 (456)
Q Consensus 271 C~~C~~~~~~~~~~~~~~C~~C~~~ 295 (456)
|..|.+......+.+...|..||..
T Consensus 6 C~~C~~~~i~~~~~~~~~C~~Cg~~ 30 (33)
T PF08792_consen 6 CSKCGGNGIVNKEDDYEVCIFCGSS 30 (33)
T ss_pred cCCCCCCeEEEecCCeEEcccCCcE
Confidence 5678877655444456789999864
No 467
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=30.11 E-value=34 Score=21.86 Aligned_cols=23 Identities=30% Similarity=0.740 Sum_probs=17.1
Q ss_pred CcCcCCCCC--CccCcCCCCcccccH
Q 012772 30 CDGCFASSN--LKKCSACQVVWYCGS 53 (456)
Q Consensus 30 C~~C~~~~~--~~~C~~C~~v~yCs~ 53 (456)
|+.|-+... +..|..|+. .||++
T Consensus 1 C~~C~~~~~l~~f~C~~C~~-~FC~~ 25 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCGN-LFCGE 25 (39)
T ss_pred CcccCCcccccCeECCccCC-ccccc
Confidence 667777732 578999999 49974
No 468
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=29.82 E-value=2.2e+02 Score=31.30 Aligned_cols=167 Identities=15% Similarity=0.183 Sum_probs=0.0
Q ss_pred CccccCCCCCCCcccCCCCCCeeeccCCCcCCHHHH----------------HHHHHHHHHHHHHHHhhhhcCChHHHHH
Q 012772 266 GYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEI----------------KKIASEVNILSKKTLALTSCGNHQEVVS 329 (456)
Q Consensus 266 ~f~C~C~~C~~~~~~~~~~~~~~C~~C~~~~~~~~~----------------~~~~~~~~~l~~~a~~~~~~g~~~~a~~ 329 (456)
++.=.|+.|+.++..-.......|--||.....-.. +++.+++..++-.+......++...-..
T Consensus 442 g~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~ 521 (730)
T COG1198 442 GYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKG 521 (730)
T ss_pred CCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchh
Q ss_pred HHHHHHHHHHhhcCCCCccHHHHHHHHHH----------------HHHHccCHHHHHHHHHHHHHHHHH-----------
Q 012772 330 TYKMIEKLQKKLYHPFSVNLMQTREKLIK----------------ILMELEDWKEALAYCQLTIPVYQR----------- 382 (456)
Q Consensus 330 ~~~~~~~~~~~~l~p~h~~~~~~~~~L~~----------------~~~~~g~~~~A~~~~~~~l~~~e~----------- 382 (456)
.++.++ ..+++.-.+++---..++. .+....||..+++.++....+.-+
T Consensus 522 ~~~~~l----~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~Vv 597 (730)
T COG1198 522 ALEDLL----DQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVV 597 (730)
T ss_pred hHHHHH----HHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEE
Q ss_pred --hcCCCChHHHHHHHHHHHHHHHc-----------------------CCHHHHHHHHHHHHHHHH-------HhcCCCC
Q 012772 383 --VYPQFHPLLGLQYYTCGKLEWFL-----------------------GDTENAIKSMTEAVEILR-------ITHGTNS 430 (456)
Q Consensus 383 --~~g~~hp~~~~~l~~La~~~~~~-----------------------g~~~eA~~~l~~Al~i~~-------~~~G~~h 430 (456)
.|-|+||.+-..+.+=-....+. .+.+.|++..++..++++ ..+||..
T Consensus 598 IQT~~P~hp~i~~~~~~dy~~F~~~El~~Rk~~~~PPf~~l~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlGP~~ 677 (730)
T COG1198 598 IQTYNPDHPAIQALKRGDYEAFYEQELAERKELGLPPFSRLAAVIASAKNEEKALEFARALRELLKEALPVDVEVLGPAP 677 (730)
T ss_pred EEeCCCCcHHHHHHHhcCHHHHHHHHHHHHHhcCCCChhhheeeEecCCCHHHHHHHHHHHHHHHHhcccccceeeCCCc
Q ss_pred chHHHH
Q 012772 431 PFMKEL 436 (456)
Q Consensus 431 ~~~~~~ 436 (456)
..+..+
T Consensus 678 a~~~r~ 683 (730)
T COG1198 678 APLAKL 683 (730)
T ss_pred chhHHh
No 469
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=29.80 E-value=2.6e+02 Score=30.04 Aligned_cols=47 Identities=23% Similarity=0.234 Sum_probs=26.1
Q ss_pred HccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012772 362 ELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAV 419 (456)
Q Consensus 362 ~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al 419 (456)
+.|+|.+|-.+.++.= ..-|. .++.-|+.+.+..+++||.+.|.+|-
T Consensus 785 e~~~W~eAFalAe~hP--------e~~~d---Vy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 785 ETQRWDEAFALAEKHP--------EFKDD---VYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred ecccchHhHhhhhhCc--------ccccc---ccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 4466666666554422 22222 34445666666777777777776553
No 470
>KOG4850 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.63 E-value=25 Score=29.97 Aligned_cols=25 Identities=36% Similarity=1.038 Sum_probs=18.6
Q ss_pred ccCcCcCCCCCCccCcCCCCcccccHHhhhh
Q 012772 28 SRCDGCFASSNLKKCSACQVVWYCGSNCQKL 58 (456)
Q Consensus 28 ~~C~~C~~~~~~~~C~~C~~v~yCs~~C~~~ 58 (456)
.-|.+|+ ++|+.|+.. -|+.+|+..
T Consensus 143 ~eCdGC~-----Y~C~~CGST-kCG~~CR~n 167 (190)
T KOG4850|consen 143 VECDGCH-----YPCKQCGST-KCGIGCRQN 167 (190)
T ss_pred cccccce-----ecccccccc-ccccccccc
Confidence 3455554 789999994 899999754
No 471
>PHA00626 hypothetical protein
Probab=29.39 E-value=59 Score=22.58 Aligned_cols=32 Identities=19% Similarity=0.473 Sum_probs=20.7
Q ss_pred cCCCCCCC-cccC----CCCCCeeeccCCCcCCHHHH
Q 012772 270 KDDGCSGF-LLRD----SDDKGFTCQQCGLVRSKEEI 301 (456)
Q Consensus 270 ~C~~C~~~-~~~~----~~~~~~~C~~C~~~~~~~~~ 301 (456)
.|+.|... +... .....+.|+.||...+.+..
T Consensus 2 ~CP~CGS~~Ivrcg~cr~~snrYkCkdCGY~ft~~~~ 38 (59)
T PHA00626 2 SCPKCGSGNIAKEKTMRGWSDDYVCCDCGYNDSKDAF 38 (59)
T ss_pred CCCCCCCceeeeeceecccCcceEcCCCCCeechhhh
Confidence 58899863 3221 12467999999987665443
No 472
>KOG2858 consensus Uncharacterized conserved protein [General function prediction only]
Probab=29.38 E-value=22 Score=34.53 Aligned_cols=33 Identities=24% Similarity=0.552 Sum_probs=28.6
Q ss_pred CCCccCcCcCCCCCCccCcCCCCcccccHHhhhh
Q 012772 25 SSISRCDGCFASSNLKKCSACQVVWYCGSNCQKL 58 (456)
Q Consensus 25 ~~~~~C~~C~~~~~~~~C~~C~~v~yCs~~C~~~ 58 (456)
.....|..|++..+-++||+|-. .+||-+|...
T Consensus 15 ~~~vlCgVClknE~KYkCPRCl~-rtCsLeCskk 47 (390)
T KOG2858|consen 15 LHSVLCGVCLKNEPKYKCPRCLA-RTCSLECSKK 47 (390)
T ss_pred cchhhhhhcccCcccccCcchhh-hheecccccc
Confidence 35678999999999999999988 7999999854
No 473
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=29.19 E-value=96 Score=28.73 Aligned_cols=54 Identities=19% Similarity=0.262 Sum_probs=41.6
Q ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772 360 LMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 421 (456)
Q Consensus 360 ~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i 421 (456)
..+.|+.+.|.+.+.+++.+ -|.-+..++.+|......|+++.|.+.|++.+++
T Consensus 5 ~~~~~D~~aaaely~qal~l--------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 5 LAESGDAEAAAELYNQALEL--------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred hcccCChHHHHHHHHHHhhc--------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 44567888888888888753 3555677888888888888998888888887765
No 474
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=29.00 E-value=4.8e+02 Score=25.04 Aligned_cols=102 Identities=17% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHH------HhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHH------------
Q 012772 313 KKTLALTSCGNHQEVVSTYKMIEKLQ------KKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQ------------ 374 (456)
Q Consensus 313 ~~a~~~~~~g~~~~a~~~~~~~~~~~------~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~------------ 374 (456)
+.|+.++-.-+|..|++.+++..+.. +.--+..-..-...---=++++.++++|.+++.+-.
T Consensus 40 ~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpk 119 (309)
T PF07163_consen 40 EAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPK 119 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHH
Q ss_pred ----------------HHHHHHHHhcC-CCChHHHHHHHHHHHHHHH-----cCCHHHHHHHH
Q 012772 375 ----------------LTIPVYQRVYP-QFHPLLGLQYYTCGKLEWF-----LGDTENAIKSM 415 (456)
Q Consensus 375 ----------------~~l~~~e~~~g-~~hp~~~~~l~~La~~~~~-----~g~~~eA~~~l 415 (456)
.++++-...+- +.+..... |-.++.+|.. +|.++||+++.
T Consensus 120 IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~-y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 120 ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPE-YGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchh-hHHHHHHHHHHHHhccccHHHHHHHH
No 475
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=28.85 E-value=4.2e+02 Score=23.66 Aligned_cols=77 Identities=16% Similarity=0.144 Sum_probs=52.1
Q ss_pred CccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012772 346 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ-FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 424 (456)
Q Consensus 346 h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~-~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~ 424 (456)
...+..+..+....+...++++.|..+...+-.+. .|+ ..-......+--|-+....|+.+++.+..++++++++.
T Consensus 124 ~~~i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~---~~~~~~~~ki~~~f~~~l~~y~~g~~~~~~~~i~~~i~~l~~ 200 (220)
T TIGR01716 124 RRRVIQLLLNIAVLLIEKNEFSYAQYFLEKLEKIL---DPEDDLYERILFNFLKGIILYKEGQKESGEEKIEQAIEIFDE 200 (220)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh---chhhhHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHH
Confidence 34466777788888888888888887766643321 222 22233334444455556789888899999999999998
Q ss_pred h
Q 012772 425 T 425 (456)
Q Consensus 425 ~ 425 (456)
.
T Consensus 201 l 201 (220)
T TIGR01716 201 L 201 (220)
T ss_pred c
Confidence 4
No 476
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=28.73 E-value=2.9e+02 Score=29.36 Aligned_cols=101 Identities=14% Similarity=0.172 Sum_probs=0.0
Q ss_pred cCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 012772 321 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK 400 (456)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~ 400 (456)
+|+.-.|+..+.+++. +.|...++--+ +||++.+.-|....|-.+..+.|.+. .--|-.|-.. |.
T Consensus 620 ~gn~~~a~~cl~~a~~-----~~p~~~~v~~v--~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~-------g~ 684 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALN-----LAPLQQDVPLV--NLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSL-------GN 684 (886)
T ss_pred cCCcHHHHHHHHHHhc-----cChhhhcccHH--HHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhc-------ch
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 012772 401 LEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 441 (456)
Q Consensus 401 ~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~ 441 (456)
.++.+.+.+.|++.+++|+. ..++.|..++-+.+++
T Consensus 685 ~~l~l~~i~~a~~~~~~a~~-----~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 685 AYLALKNISGALEAFRQALK-----LTTKCPECENSLKLIR 720 (886)
T ss_pred hHHHHhhhHHHHHHHHHHHh-----cCCCChhhHHHHHHHH
No 477
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.48 E-value=4.3e+02 Score=23.55 Aligned_cols=95 Identities=12% Similarity=0.128 Sum_probs=63.5
Q ss_pred HHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q 012772 315 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 394 (456)
Q Consensus 315 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~ 394 (456)
+....+.|+-.+|+..|..+-+. ...+.--.+++++ ..+.++...|-|++-..- .+-+-++.+|.+...
T Consensus 101 at~~a~kgdta~AV~aFdeia~d--t~~P~~~rd~ARl--raa~lLvD~gsy~dV~sr-------vepLa~d~n~mR~sA 169 (221)
T COG4649 101 ATLLAQKGDTAAAVAAFDEIAAD--TSIPQIGRDLARL--RAAYLLVDNGSYDDVSSR-------VEPLAGDGNPMRHSA 169 (221)
T ss_pred HHHHhhcccHHHHHHHHHHHhcc--CCCcchhhHHHHH--HHHHHHhccccHHHHHHH-------hhhccCCCChhHHHH
Confidence 33344567888888777665332 1111111233333 345566778887654433 455677899999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772 395 YYTCGKLEWFLGDTENAIKSMTEAVE 420 (456)
Q Consensus 395 l~~La~~~~~~g~~~eA~~~l~~Al~ 420 (456)
---||...++.|++..|.+.+.+..+
T Consensus 170 rEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 170 REALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhHHHHhccchHHHHHHHHHHHc
Confidence 99999999999999999999887655
No 478
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=28.31 E-value=1.6e+02 Score=28.57 Aligned_cols=59 Identities=8% Similarity=0.026 Sum_probs=38.3
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 012772 312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIP 378 (456)
Q Consensus 312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~ 378 (456)
.+.|.....+|+.++|..+++.+++ +.|.|+..+ ...+...-...+..+|-++|-++|.
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAla-----laP~~p~~L---~e~G~f~E~~~~iv~ADq~Y~~ALt 178 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALA-----LAPTNPQIL---IEMGQFREMHNEIVEADQCYVKALT 178 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHh-----cCCCCHHHH---HHHhHHHHhhhhhHhhhhhhheeee
Confidence 3455566778999999999998876 457776543 3344433334555666666666553
No 479
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=28.27 E-value=5.6e+02 Score=24.87 Aligned_cols=41 Identities=24% Similarity=0.379 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHH
Q 012772 298 KEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQ 338 (456)
Q Consensus 298 ~~~~~~~~~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~ 338 (456)
.++|..+.+.|..++++|..+..+|+.++|.+++..+..+.
T Consensus 121 ~~~v~~l~e~I~~~l~~~E~LG~eG~Veeaq~~~~e~E~lk 161 (319)
T KOG0796|consen 121 AEKVHELEEKIGKLLEKAEELGEEGNVEEAQKAMKEVEELK 161 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 45666667788999999999999999999999988887765
No 480
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=28.26 E-value=43 Score=26.96 Aligned_cols=23 Identities=22% Similarity=0.512 Sum_probs=18.0
Q ss_pred CCccCcCcCCC-----CCCccCcCCCCc
Q 012772 26 SISRCDGCFAS-----SNLKKCSACQVV 48 (456)
Q Consensus 26 ~~~~C~~C~~~-----~~~~~C~~C~~v 48 (456)
...+|..|.++ ..++.||.|+..
T Consensus 8 tKR~Cp~CG~kFYDLnk~PivCP~CG~~ 35 (108)
T PF09538_consen 8 TKRTCPSCGAKFYDLNKDPIVCPKCGTE 35 (108)
T ss_pred CcccCCCCcchhccCCCCCccCCCCCCc
Confidence 36899999998 246779988875
No 481
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=28.18 E-value=27 Score=33.55 Aligned_cols=42 Identities=26% Similarity=0.753 Sum_probs=29.2
Q ss_pred CCceeecCCC-CCCccCcCcCCC---CCCccCcCCCCcccccHHhhhh
Q 012772 15 EPYVCVPNNS-SSISRCDGCFAS---SNLKKCSACQVVWYCGSNCQKL 58 (456)
Q Consensus 15 ~P~~~~~~~~-~~~~~C~~C~~~---~~~~~C~~C~~v~yCs~~C~~~ 58 (456)
+||+-+|... ....+|..|+.. ...++|+.|+.+ ||. +|-.-
T Consensus 317 ~~F~Eip~~~~~~~~~Cf~C~~~~~~~~~y~C~~Ck~~-FCl-dCDv~ 362 (378)
T KOG2807|consen 317 KPFVEIPETEYNGSRFCFACQGELLSSGRYRCESCKNV-FCL-DCDVF 362 (378)
T ss_pred cchhhccccccCCCcceeeeccccCCCCcEEchhccce-eec-cchHH
Confidence 4565555443 356779999655 357899999995 994 78643
No 482
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.09 E-value=1.7e+02 Score=29.53 Aligned_cols=68 Identities=13% Similarity=0.146 Sum_probs=42.9
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012772 355 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP---LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 424 (456)
Q Consensus 355 ~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp---~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~ 424 (456)
+++..|-++++|++|+.+|++.|.....--|-..+ .+-...++=|. ..+-++.++...++.=++|++.
T Consensus 27 ~~gl~~dE~~~~e~a~~~Ye~gl~~i~~GIpvg~k~k~~~~~~~W~dAc--aliQklkes~~~vr~Rl~vL~k 97 (560)
T KOG2709|consen 27 EQGLCYDEVNDWENALAMYEKGLNLIVEGIPVGEKMKNARKSEMWKDAC--ALIQKLKESKSSVRHRLNVLKK 97 (560)
T ss_pred HhhcchhhhcCHHHHHHHHHHHHHHHHhcCcccccccccccchhhHHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 44556678899999999999999987773332222 22222223222 2234567777777777777776
No 483
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=28.06 E-value=1.1e+02 Score=18.01 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHc----CCHHHHHHHHHHHHH
Q 012772 394 QYYTCGKLEWFL----GDTENAIKSMTEAVE 420 (456)
Q Consensus 394 ~l~~La~~~~~~----g~~~eA~~~l~~Al~ 420 (456)
..+.||..+..- .+.++|..++++|-+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 467788877542 377889999888864
No 484
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=27.94 E-value=4.9e+02 Score=24.07 Aligned_cols=24 Identities=25% Similarity=0.178 Sum_probs=14.7
Q ss_pred CCccHHHHHHHHHHHHHHccCHHH
Q 012772 345 FSVNLMQTREKLIKILMELEDWKE 368 (456)
Q Consensus 345 ~h~~~~~~~~~L~~~~~~~g~~~~ 368 (456)
.|+.+.+++..|+.+....+++..
T Consensus 70 ~~~~L~~a~~kLg~v~~~v~dl~~ 93 (230)
T cd07625 70 THHGLGNLYEKFGKVLTAVGDIDS 93 (230)
T ss_pred ccchHHHHHHHHHHHHHHHhhHHH
Confidence 355666666666666666665543
No 485
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=27.75 E-value=65 Score=26.13 Aligned_cols=24 Identities=25% Similarity=0.492 Sum_probs=17.3
Q ss_pred CCCCCCCcccCCCCCCeeeccCCCcCCH
Q 012772 271 DDGCSGFLLRDSDDKGFTCQQCGLVRSK 298 (456)
Q Consensus 271 C~~C~~~~~~~~~~~~~~C~~C~~~~~~ 298 (456)
|+.|.+.+.-. ...|+.|+..+..
T Consensus 1 CPvCg~~l~vt----~l~C~~C~t~i~G 24 (113)
T PF09862_consen 1 CPVCGGELVVT----RLKCPSCGTEIEG 24 (113)
T ss_pred CCCCCCceEEE----EEEcCCCCCEEEe
Confidence 78898876533 4689999877654
No 486
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=27.47 E-value=1.6e+02 Score=31.55 Aligned_cols=26 Identities=15% Similarity=0.018 Sum_probs=16.7
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Q 012772 354 EKLIKILMELEDWKEALAYCQLTIPV 379 (456)
Q Consensus 354 ~~L~~~~~~~g~~~~A~~~~~~~l~~ 379 (456)
..-++-+.+..+|+||-+.+.++-.-
T Consensus 808 ~pyaqwLAE~DrFeEAqkAfhkAGr~ 833 (1081)
T KOG1538|consen 808 MPYAQWLAENDRFEEAQKAFHKAGRQ 833 (1081)
T ss_pred chHHHHhhhhhhHHHHHHHHHHhcch
Confidence 34455566777888888777665433
No 487
>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) []. ; GO: 0003677 DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, 0005737 cytoplasm; PDB: 2IYK_B 2WJY_A 2WJV_A 2XZL_A.
Probab=27.33 E-value=20 Score=30.56 Aligned_cols=29 Identities=28% Similarity=0.778 Sum_probs=19.0
Q ss_pred cCcCcCCC--CCCccCcCCCCcccccHHhhhh
Q 012772 29 RCDGCFAS--SNLKKCSACQVVWYCGSNCQKL 58 (456)
Q Consensus 29 ~C~~C~~~--~~~~~C~~C~~v~yCs~~C~~~ 58 (456)
.|.+|.-. ..+++|..|+. .||+-..-..
T Consensus 2 aC~YCG~~~p~~vv~C~~c~k-WFCNg~~~~s 32 (152)
T PF09416_consen 2 ACAYCGIHDPSCVVKCNTCNK-WFCNGRGNTS 32 (152)
T ss_dssp S-TTT----CCCEEEETTTTE-EEES--TTSS
T ss_pred CccccCCCCcccEeEcCCCCc-EeecCCCCCc
Confidence 49999955 56899999999 7998876544
No 488
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=27.23 E-value=3.5e+02 Score=22.19 Aligned_cols=86 Identities=12% Similarity=0.064 Sum_probs=46.8
Q ss_pred CChHHHHHHHHHHHHHHHh-hcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 012772 322 GNHQEVVSTYKMIEKLQKK-LYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK 400 (456)
Q Consensus 322 g~~~~a~~~~~~~~~~~~~-~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~ 400 (456)
|.-.....++++++..... ---.+++..+++....+. .-+ ++.+.+..+ +.+-.|. ..+.-+-..|.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~----~~~--~~~~if~~l---~~~~IG~---~~A~fY~~wA~ 107 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYAD----LSS--DPREIFKFL---YSKGIGT---KLALFYEEWAE 107 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHT----TBS--HHHHHHHHH---HHHTTST---TBHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHH----Hcc--CHHHHHHHH---HHcCccH---HHHHHHHHHHH
Confidence 3444455556666554322 122234444444333222 222 445554433 2333343 34667888899
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 012772 401 LEWFLGDTENAIKSMTEAV 419 (456)
Q Consensus 401 ~~~~~g~~~eA~~~l~~Al 419 (456)
.+...|++++|.++|++++
T Consensus 108 ~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 108 FLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhC
Confidence 9999999999999999875
No 489
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=27.21 E-value=3.1e+02 Score=22.55 Aligned_cols=86 Identities=15% Similarity=0.066 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh------cCCCChHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772 351 QTREKLIKILMELEDWKEALAYCQLTIPVYQRV------YPQFHPLL--GLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 422 (456)
Q Consensus 351 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~------~g~~hp~~--~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~ 422 (456)
.+..+++.++++.|+.+.-..+.++...+-..- +++.+|.. ...|..++..+...|++..|++++..-.+..
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Q ss_pred HHhcCCCCchHHHHHH
Q 012772 423 RITHGTNSPFMKELIL 438 (456)
Q Consensus 423 ~~~~G~~h~~~~~~~~ 438 (456)
. .-.+ +....++++
T Consensus 83 ~-I~i~-~~~W~~Ll~ 96 (126)
T PF12921_consen 83 P-IPIP-KEFWRRLLE 96 (126)
T ss_pred C-CCCC-HHHHHHHHH
No 490
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=27.08 E-value=39 Score=28.83 Aligned_cols=25 Identities=20% Similarity=0.519 Sum_probs=19.1
Q ss_pred CCccCcCcCCCC------CCccCcCCCCccc
Q 012772 26 SISRCDGCFASS------NLKKCSACQVVWY 50 (456)
Q Consensus 26 ~~~~C~~C~~~~------~~~~C~~C~~v~y 50 (456)
..-+|.+|.... .+.+||.|+...|
T Consensus 111 G~l~C~~Cg~~~~~~~~~~l~~Cp~C~~~~F 141 (146)
T PF07295_consen 111 GTLVCENCGHEVELTHPERLPPCPKCGHTEF 141 (146)
T ss_pred ceEecccCCCEEEecCCCcCCCCCCCCCCee
Confidence 467899998772 3789999987544
No 491
>TIGR01053 LSD1 zinc finger domain, LSD1 subclass. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC
Probab=26.74 E-value=58 Score=19.70 Aligned_cols=24 Identities=21% Similarity=0.541 Sum_probs=18.7
Q ss_pred CCCCCCCcccCCCCCCeeeccCCC
Q 012772 271 DDGCSGFLLRDSDDKGFTCQQCGL 294 (456)
Q Consensus 271 C~~C~~~~~~~~~~~~~~C~~C~~ 294 (456)
|..|...+...+....++|..|..
T Consensus 4 C~~C~t~L~yP~gA~~vrCs~C~~ 27 (31)
T TIGR01053 4 CGGCRTLLMYPRGASSVRCALCQT 27 (31)
T ss_pred cCCCCcEeecCCCCCeEECCCCCe
Confidence 567887776667777899999975
No 492
>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....
Probab=26.60 E-value=18 Score=27.98 Aligned_cols=30 Identities=20% Similarity=0.503 Sum_probs=19.4
Q ss_pred CCccccCCCCCCCcccCCCCCCeeeccCCCcC
Q 012772 265 EGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVR 296 (456)
Q Consensus 265 ~~f~C~C~~C~~~~~~~~~~~~~~C~~C~~~~ 296 (456)
..|.| +.|...-..-.....|.|.+|+..+
T Consensus 34 ~ky~C--p~Cgk~~vkR~a~GIW~C~~C~~~~ 63 (90)
T PF01780_consen 34 AKYTC--PFCGKTSVKRVATGIWKCKKCGKKF 63 (90)
T ss_dssp S-BEE--SSSSSSEEEEEETTEEEETTTTEEE
T ss_pred CCCcC--CCCCCceeEEeeeEEeecCCCCCEE
Confidence 35777 5888644333345679999998653
No 493
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=26.50 E-value=39 Score=23.80 Aligned_cols=33 Identities=27% Similarity=0.518 Sum_probs=20.0
Q ss_pred CccCcCcCCCC------CCccCcCCC-CcccccHHhhhhc
Q 012772 27 ISRCDGCFASS------NLKKCSACQ-VVWYCGSNCQKLD 59 (456)
Q Consensus 27 ~~~C~~C~~~~------~~~~C~~C~-~v~yCs~~C~~~~ 59 (456)
..+|..|.... ...+||.|+ ..-|=...|++..
T Consensus 9 ~~~CtSCg~~i~p~e~~v~F~CPnCGe~~I~Rc~~CRk~g 48 (61)
T COG2888 9 PPVCTSCGREIAPGETAVKFPCPNCGEVEIYRCAKCRKLG 48 (61)
T ss_pred CceeccCCCEeccCCceeEeeCCCCCceeeehhhhHHHcC
Confidence 46788887763 146788887 3333336677543
No 494
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=26.37 E-value=33 Score=35.56 Aligned_cols=54 Identities=22% Similarity=0.388 Sum_probs=36.5
Q ss_pred CCCCCCCeE---EEe---------CCceeecCCCCCCccCcCcCCC-----CCCccCcCCCCcccccHHhhhh
Q 012772 3 SFHVSGEVI---ISQ---------EPYVCVPNNSSSISRCDGCFAS-----SNLKKCSACQVVWYCGSNCQKL 58 (456)
Q Consensus 3 ~~i~~G~vi---l~e---------~P~~~~~~~~~~~~~C~~C~~~-----~~~~~C~~C~~v~yCs~~C~~~ 58 (456)
|||..||+| +.. .|-+.-+..-...+.|++|... .....|.+|+.- |= +.|..+
T Consensus 120 sdI~eG~lvEvvl~~~at~ed~~i~PH~l~vhSY~~PtFCD~CGEmL~GLvrQGlKC~gCglN-yH-KRCa~k 190 (888)
T KOG4236|consen 120 SDITEGDLVEVVLSASATFEDFQIRPHTLFVHSYKAPTFCDFCGEMLFGLVRQGLKCEGCGLN-YH-KRCAFK 190 (888)
T ss_pred cccccCceEEEEeeccccccceeeecceeeeecccCchHHHHHHHHHHHHHHccccccCCCCc-Hh-hhhhhc
Confidence 789999865 332 3444444444567999999987 246789999883 54 566544
No 495
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.20 E-value=7.8e+02 Score=25.84 Aligned_cols=124 Identities=15% Similarity=0.059 Sum_probs=64.4
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772 313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 392 (456)
Q Consensus 313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~ 392 (456)
.+|..+...|+-+.|+.+.+..+...-+.++ .-....++-.+..+.+|.+|..++..+.+.-++--.-+--..|
T Consensus 272 ~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~------~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa~ 345 (546)
T KOG3783|consen 272 MEARILSIKGNSEAAIDMESLSIPIRMKQVK------SLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYTYFAG 345 (546)
T ss_pred HHHHHHHHcccHHHHHHHHHhcccHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHHH
Confidence 3444455566766667766655542222111 1233456667778889999999988877765432222222222
Q ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 012772 393 LQYYTCGKLEWF-LGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 443 (456)
Q Consensus 393 ~~l~~La~~~~~-~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~ 443 (456)
-.++.=...... .|+-++| +.+.+...-+.+.-|++-|.-+-+..+.+.-
T Consensus 346 cc~l~~~~~~q~~~~ne~~a-~~~~k~~~~l~~~a~K~~P~E~f~~RKverf 396 (546)
T KOG3783|consen 346 CCLLQNWEVNQGAGGNEEKA-QLYFKVGEELLANAGKNLPLEKFIVRKVERF 396 (546)
T ss_pred HHHhccHHHHHhcccchhHH-HHHHHHHHHHHHhccccCchhHHHHHHHHHH
Confidence 222111222222 3344444 4444555555555577777666655554443
No 496
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=25.76 E-value=5.3e+02 Score=25.36 Aligned_cols=39 Identities=13% Similarity=-0.059 Sum_probs=31.7
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 012772 388 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH 426 (456)
Q Consensus 388 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~ 426 (456)
+-..|..++.+|......+++.+|+..|+.|.+.++...
T Consensus 249 ~~~~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~~~ 287 (346)
T cd09247 249 ALHEARSQLYLARRLKEAGHIGVAVGVLREALRNLKKKL 287 (346)
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 344677888888888889999999999999999766553
No 497
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=25.72 E-value=6.6e+02 Score=24.81 Aligned_cols=98 Identities=13% Similarity=0.146 Sum_probs=61.5
Q ss_pred CChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 012772 322 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKL 401 (456)
Q Consensus 322 g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~ 401 (456)
++.++|++..+++.+.....=-| -.+..+...++.++...||..++.+.....-.......+ --|.+-..+|-++.-
T Consensus 89 ~D~~~al~~Le~i~~~~~~~~e~--~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~-v~~~Vh~~fY~lssq 165 (380)
T KOG2908|consen 89 SDKDEALEFLEKIIEKLKEYKEP--DAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDG-VTSNVHSSFYSLSSQ 165 (380)
T ss_pred ccHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccC-CChhhhhhHHHHHHH
Confidence 46788888888776543322222 246667778889999999999999888777666665444 333344445555544
Q ss_pred -HHHcCCHHHHHHHHHHHHHHHHHh
Q 012772 402 -EWFLGDTENAIKSMTEAVEILRIT 425 (456)
Q Consensus 402 -~~~~g~~~eA~~~l~~Al~i~~~~ 425 (456)
|...|+++. +|+.|+.-+.-+
T Consensus 166 Yyk~~~d~a~---yYr~~L~YL~~~ 187 (380)
T KOG2908|consen 166 YYKKIGDFAS---YYRHALLYLGCS 187 (380)
T ss_pred HHHHHHhHHH---HHHHHHHHhccc
Confidence 444566543 455665555444
No 498
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=25.65 E-value=38 Score=28.81 Aligned_cols=26 Identities=31% Similarity=0.562 Sum_probs=16.9
Q ss_pred cCCCCCCCcccCC---------------CCCCeeeccCCCc
Q 012772 270 KDDGCSGFLLRDS---------------DDKGFTCQQCGLV 295 (456)
Q Consensus 270 ~C~~C~~~~~~~~---------------~~~~~~C~~C~~~ 295 (456)
.|..|.+.+.+.+ ...-|.|+.||+.
T Consensus 93 RC~~CN~~L~~v~~~~v~~~vp~~v~~~~~~f~~C~~C~ki 133 (147)
T PF01927_consen 93 RCPKCNGPLRPVSKEEVKDRVPPYVYETYDEFWRCPGCGKI 133 (147)
T ss_pred ccCCCCcEeeechhhccccccCccccccCCeEEECCCCCCE
Confidence 4678887654321 1235899999973
No 499
>PRK14562 haloacid dehalogenase superfamily protein; Provisional
Probab=25.52 E-value=5e+02 Score=23.41 Aligned_cols=141 Identities=19% Similarity=0.121 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHh---hcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 012772 301 IKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKK---LYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTI 377 (456)
Q Consensus 301 ~~~~~~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~---~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l 377 (456)
+.++..++....+.+-....++++++|.+.++.+.+...+ .+.+ ++.+.. .+.+...+++|.+|..++.-+-
T Consensus 23 iik~sRdI~~~Sk~~I~~lHr~~~~~a~~~l~~a~~~~~~l~~~~~~-~~~~~y----~~~~~~~lQEyvEA~~f~~~l~ 97 (204)
T PRK14562 23 ALKLSREIVRLSGDAIRAIHRGDFEEAEKLLKEAEELVKELKELLKD-HPELYY----AGYVGTALQEYVEALLVYSLLF 97 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhcc-Cchhhh----hhhcchHHHHHHHHHHHHHHHc
Confidence 3344445555555554455567788887777666554332 2332 444310 1111223345555554432111
Q ss_pred HHHHHhcC---CCChHHHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHHHHHh--cCCCCchHHHHHHHHHH
Q 012772 378 PVYQRVYP---QFHPLLGLQYYTCG----------KLEWFLGDTENAIKSMTEAVEILRIT--HGTNSPFMKELILKLEE 442 (456)
Q Consensus 378 ~~~e~~~g---~~hp~~~~~l~~La----------~~~~~~g~~~eA~~~l~~Al~i~~~~--~G~~h~~~~~~~~~l~~ 442 (456)
..-+| .-|......+..|+ .-....|+++.|.++++=.-+|.... +...+..+.++..++.-
T Consensus 98 ---~~~l~s~eel~v~~~dYLlGl~Dl~GEL~R~al~~l~~gd~~~~~~i~~fm~~ly~~~~~l~~~~~~~~~LRkK~D~ 174 (204)
T PRK14562 98 ---ENKIPSPEELGVPEAAYLLGLADAIGELRRHILELLRKGEIEEAEKLLEIMEEIYEFLMTLDYPDAITPGLRRKQDV 174 (204)
T ss_pred ---CCCCCCHHHcCCCHHHHHhHHHHHHhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCCcccchhhHHHHH
Confidence 00111 01222333333333 33445799999888766554544443 32223344556566655
Q ss_pred HHHHHHh
Q 012772 443 AQAEASY 449 (456)
Q Consensus 443 ~~~e~~~ 449 (456)
++..++.
T Consensus 175 ~r~~lek 181 (204)
T PRK14562 175 ARSLLER 181 (204)
T ss_pred HHHHHHH
Confidence 5555444
No 500
>PF04570 DUF581: Protein of unknown function (DUF581); InterPro: IPR007650 This is a family of uncharacterised proteins.
Probab=25.44 E-value=46 Score=23.46 Aligned_cols=33 Identities=15% Similarity=0.258 Sum_probs=21.0
Q ss_pred CccCcCcCCCCC--CccCcCCCCcccccHHhhhhc
Q 012772 27 ISRCDGCFASSN--LKKCSACQVVWYCGSNCQKLD 59 (456)
Q Consensus 27 ~~~C~~C~~~~~--~~~C~~C~~v~yCs~~C~~~~ 59 (456)
-..|..|-+... .-.+---+-..|||.+|+...
T Consensus 16 L~~C~~C~k~L~~~~DiymYrGd~aFCS~ECR~~q 50 (58)
T PF04570_consen 16 LSFCYLCKKKLDPGKDIYMYRGDKAFCSEECRSQQ 50 (58)
T ss_pred HHHHHccCCCCCCCCCeeeeccccccccHHHHHHH
Confidence 456888887732 112334455689999998653
Done!