Query 012773
Match_columns 456
No_of_seqs 369 out of 2409
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 15:57:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012773.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012773hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ct9_A Asparagine synthetase B 100.0 3.3E-93 1.1E-97 759.9 34.0 432 1-439 116-552 (553)
2 1jgt_A Beta-lactam synthetase; 100.0 1.6E-67 5.5E-72 557.3 27.6 332 1-365 116-472 (513)
3 1q15_A CARA; CMPR, (2S,5S)-5-c 100.0 6.4E-67 2.2E-71 551.8 26.1 355 1-395 99-486 (503)
4 1ao0_A Glutamine phosphoribosy 99.5 1.6E-13 5.5E-18 142.9 13.1 116 1-119 153-284 (459)
5 1xff_A D-fructose-6-, glucosam 99.2 3.5E-11 1.2E-15 114.7 9.3 70 1-74 151-221 (240)
6 2e18_A NH(3)-dependent NAD(+) 99.2 2.9E-11 1E-15 116.3 7.2 132 92-238 6-140 (257)
7 1kqp_A NAD+ synthase, NH(3)-de 99.2 4.8E-11 1.6E-15 115.7 8.2 144 89-239 19-169 (271)
8 3bl5_A Queuosine biosynthesis 99.2 8.8E-11 3E-15 109.7 9.6 119 109-238 2-130 (219)
9 1xng_A NH(3)-dependent NAD(+) 99.1 4.1E-11 1.4E-15 116.1 7.1 129 92-238 9-143 (268)
10 3n05_A NH(3)-dependent NAD(+) 99.0 3.8E-10 1.3E-14 121.0 9.2 135 91-239 305-445 (590)
11 3sdb_A Glutamine-dependent NAD 99.0 1.4E-10 4.9E-15 126.0 4.4 258 92-362 341-617 (680)
12 1ecf_A Glutamine phosphoribosy 99.0 7.2E-10 2.4E-14 116.6 8.2 68 1-69 162-234 (504)
13 3k32_A Uncharacterized protein 99.0 1.3E-09 4.3E-14 101.2 8.7 109 110-234 6-115 (203)
14 3fiu_A NH(3)-dependent NAD(+) 98.9 2.1E-09 7.2E-14 102.8 7.0 134 90-238 11-153 (249)
15 2bpl_A Glucosamine--fructose-6 98.8 4.2E-09 1.5E-13 113.3 8.7 68 1-72 151-219 (608)
16 1wxi_A NH(3)-dependent NAD(+) 98.8 1.2E-08 4E-13 99.1 10.9 143 92-238 23-171 (275)
17 3p52_A NH(3)-dependent NAD(+) 98.8 3.4E-09 1.2E-13 101.3 6.6 128 93-238 11-144 (249)
18 2pg3_A Queuosine biosynthesis 98.8 1.3E-08 4.5E-13 96.0 10.4 116 112-238 4-133 (232)
19 2dpl_A GMP synthetase, GMP syn 98.6 9.9E-08 3.4E-12 94.0 10.6 125 94-233 5-133 (308)
20 2nz2_A Argininosuccinate synth 98.6 9.7E-08 3.3E-12 97.6 9.9 110 109-230 4-121 (413)
21 1wy5_A TILS, hypothetical UPF0 98.6 2.3E-07 7.8E-12 91.8 12.1 126 93-233 5-138 (317)
22 2hma_A Probable tRNA (5-methyl 98.6 8.1E-08 2.8E-12 97.2 8.6 113 110-234 9-137 (376)
23 1vl2_A Argininosuccinate synth 98.6 1.1E-07 3.9E-12 96.7 9.0 108 111-230 15-130 (421)
24 1kor_A Argininosuccinate synth 98.6 2.1E-07 7.1E-12 94.9 10.6 109 112-231 2-118 (400)
25 3mdn_A Glutamine aminotransfer 98.6 6.5E-08 2.2E-12 93.7 6.3 66 6-75 187-255 (274)
26 2der_A TRNA-specific 2-thiouri 98.4 3.4E-07 1.2E-11 92.7 8.5 112 110-233 17-145 (380)
27 3q4g_A NH(3)-dependent NAD(+) 98.4 4.7E-07 1.6E-11 87.7 8.7 88 92-181 24-113 (279)
28 1k92_A Argininosuccinate synth 98.3 5.3E-07 1.8E-11 92.7 7.1 111 107-229 7-130 (455)
29 3tqi_A GMP synthase [glutamine 98.2 1.6E-06 5.3E-11 91.7 7.9 123 94-234 215-344 (527)
30 1gpm_A GMP synthetase, XMP ami 98.2 4.4E-06 1.5E-10 88.2 10.8 124 93-231 211-339 (525)
31 3a2k_A TRNA(Ile)-lysidine synt 98.2 5.5E-06 1.9E-10 86.1 11.2 119 99-232 5-131 (464)
32 3dpi_A NAD+ synthetase; ssgcid 98.2 2.1E-06 7.2E-11 83.2 6.6 132 101-238 35-180 (285)
33 3ilv_A Glutamine-dependent NAD 98.1 4.1E-06 1.4E-10 90.3 9.2 90 92-181 283-407 (634)
34 2ywb_A GMP synthase [glutamine 98.1 1.2E-05 4E-10 84.5 12.3 125 93-233 193-321 (503)
35 1sur_A PAPS reductase; assimil 98.1 1.6E-05 5.4E-10 73.9 10.0 108 111-232 45-159 (215)
36 4f4h_A Glutamine dependent NAD 98.0 2E-05 6.9E-10 83.8 11.9 138 92-240 280-426 (565)
37 2c5s_A THII, probable thiamine 97.9 1.2E-05 4.3E-10 82.2 7.2 107 111-233 188-303 (413)
38 2vxo_A GMP synthase [glutamine 97.9 1.8E-05 6.3E-10 85.9 8.7 80 93-181 224-305 (697)
39 3uow_A GMP synthetase; structu 97.9 5.6E-05 1.9E-09 80.2 11.8 124 93-233 239-373 (556)
40 1ni5_A Putative cell cycle pro 97.8 5.8E-05 2E-09 77.7 10.6 112 103-233 6-121 (433)
41 2o8v_A Phosphoadenosine phosph 97.6 0.00015 5.2E-09 69.0 9.4 108 111-232 46-160 (252)
42 1zun_A Sulfate adenylyltransfe 97.6 0.00019 6.4E-09 71.0 10.0 110 111-234 47-160 (325)
43 2oq2_A Phosphoadenosine phosph 97.5 0.0003 1E-08 67.4 9.0 115 111-233 42-164 (261)
44 3rjz_A N-type ATP pyrophosphat 97.5 0.0001 3.6E-09 69.4 5.5 60 112-181 6-73 (237)
45 1ea0_A Glutamate synthase [NAD 97.3 0.00022 7.6E-09 81.9 6.7 66 1-68 326-394 (1479)
46 1vbk_A Hypothetical protein PH 97.3 0.0003 1E-08 69.0 6.9 80 111-232 180-267 (307)
47 1ofd_A Ferredoxin-dependent gl 97.3 0.00035 1.2E-08 80.5 7.7 66 1-68 325-393 (1520)
48 1te5_A Conserved hypothetical 96.9 0.00082 2.8E-08 64.1 5.1 65 4-73 168-252 (257)
49 2wsi_A FAD synthetase; transfe 96.1 0.0087 3E-07 58.5 7.1 69 111-179 54-136 (306)
50 2goy_A Adenosine phosphosulfat 96.0 0.025 8.4E-07 54.3 9.4 59 111-180 55-115 (275)
51 3fwk_A FMN adenylyltransferase 92.8 0.21 7.1E-06 48.5 7.2 66 112-177 60-139 (308)
52 3f9t_A TDC, L-tyrosine decarbo 33.5 2.9E+02 0.0099 25.7 11.2 129 93-228 68-209 (397)
53 1hle_B Horse leukocyte elastas 21.8 1.1E+02 0.0038 18.3 3.6 19 3-21 7-26 (31)
54 2h4p_B MENT, heterochromatin-a 21.1 1.1E+02 0.0038 18.7 3.6 19 3-21 8-27 (34)
55 3ri6_A O-acetylhomoserine sulf 20.6 2.4E+02 0.0082 27.8 8.0 117 95-228 83-205 (430)
No 1
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=100.00 E-value=3.3e-93 Score=759.86 Aligned_cols=432 Identities=59% Similarity=1.020 Sum_probs=356.9
Q ss_pred CcceeEEEEEEECCCCEEEEEeccCCCccEEEEEecCCeEEEecccchhhhccCccEEeCCCcEEEecCCeEEEeeCCCC
Q 012773 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGGLRRWYNPPC 80 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~~~~I~~lpPG~~~~~~~~~~~~y~~~~~ 80 (456)
+|+|||||+|||.++++++++||++|+|||||+...++.++||||+++|...+++|+.|||||++.+.+++.++||++.|
T Consensus 116 ~l~G~fa~~i~d~~~~~l~~aRD~~G~~PLy~~~~~~~~~~faSe~~al~~~~~~i~~l~pG~~~~~~~g~~~~yw~~~~ 195 (553)
T 1ct9_A 116 DLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVCRTIKEFPAGSYLWSQDGEIRSYYHRDW 195 (553)
T ss_dssp GCCEEEEEEEEETTTTEEEEEECTTCCSCCEEEECTTCCEEEESSGGGTTTTCSEEEECCTTEEEETTTCSEEECCCCGG
T ss_pred hCCccEEEEEEECCCCEEEEEECCCCCCCeEEEEecCCEEEEeechHHHHhhcCCEEEECCCeEEEEcCCcEEEeecCCc
Confidence 58999999999998899999999999999999984467899999999999999999999999999887777889999876
Q ss_pred CCC-CCCCCCCcHHHHHHHHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhh----hhhcCCcccceeccCC
Q 012773 81 YSE-QIPSNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEA----ACQWGSQLHSFCIGLE 155 (456)
Q Consensus 81 ~~~-~~~~~~~~~~~lr~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~----~~~~~~~l~tfsig~~ 155 (456)
... ..++.++.+++|+++|.+||++|+++|+|+|++||||+|||+|++++++...+... +..|..+++|||++++
T Consensus 196 ~~~~~~~~~~~~~~~lr~~L~~aV~~rl~sdvpvgv~LSGGlDSS~iaala~~~~~~~~~~~~~~~a~~~~l~tfsig~~ 275 (553)
T 1ct9_A 196 FDYDAVKDNVTDKNELRQALEDSVKSHLMSDVPYGVLLSGGLDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLP 275 (553)
T ss_dssp GSHHHHTTCCCCHHHHHHHHHHHHHHHTCCSSCEEEECCSSHHHHHHHHHHHHHC----------------CEEEEEEST
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHhcCCCceEEeCCCCccHHHHHHHHHHhhccccccccccccccCceeEEEecCC
Confidence 531 23355778999999999999999999999999999999999999999987642100 0001124899999999
Q ss_pred CCchHHHHHHHHHHhCCCceEEEeChhhHHHHHHHHHHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCchhhhcc
Q 012773 156 GSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFG 235 (456)
Q Consensus 156 ~~~e~~~A~~vA~~lg~~h~~~~~~~~~~~~~l~~~i~~~e~~~~~~i~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfg 235 (456)
+++|..+|+++|+++|++||++.++.+++++.++++++++++++.+++++++++|++++.+++.|++|+|||+||||+||
T Consensus 276 ~~~E~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GaDElfg 355 (553)
T 1ct9_A 276 GSPDLKAAQEVANHLGTVHHEIHFTVQEGLDAIRDVIYHIETYDVTTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFG 355 (553)
T ss_dssp TCHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHTTCCEEECCTTHHHHHT
T ss_pred CCcHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHcCCeEEEECCCchhccc
Confidence 88999999999999999999999999999999999999999887767777789999999999999999999999999999
Q ss_pred CCccccCCCChHHHHHHHHHHHHhchhhhhhhhccccccCCceecCCCCCHHHHHHHhcCCccccccCCCCCCcchHHHH
Q 012773 236 GYLYFHKAPNKEEFHQETCRKIKALHLYDCLRANKSTSAWGVEARVPFLDKEFINTAMSIDPEWKMVRPDLGRIEKWILR 315 (456)
Q Consensus 236 Gy~~~~~~p~~~~~~~e~~~~~~~l~~~dllr~dr~~~a~gle~r~PflD~~lve~a~slP~~~k~~~~~~~~~~K~lLR 315 (456)
||.+|+..|....|.+++.+++.+++.+|++|.||++|++|+|+|+||||++|||||++||+++|+.++ ++.+|+|||
T Consensus 356 GY~~~~~~~~~~~~~~e~~~~l~~l~~~~l~r~Dr~~ma~glE~R~PfLD~~lve~a~~lP~~~k~~~~--g~~~K~iLR 433 (553)
T 1ct9_A 356 GYLYFHKAPNAKELHEETVRKLLALHMYDCARANKAMSAWGVEARVPFLDKKFLDVAMRINPQDKMCGN--GKMEKHILR 433 (553)
T ss_dssp CSGGGGGCCSHHHHHHHHHHHHHHGGGTHHHHHHHHHHTTTCEEECGGGCHHHHHHHHHSCGGGTCC-----CCTTHHHH
T ss_pred CcHhHhhCcchhhHHHHHHHHHHHHhhhcchhhhhHHhhcCceeECCcCCHHHHHHHhcCCHHHhccCC--CCcchHHHH
Confidence 999999999888899999899999999999999999999999999999999999999999999999752 247899999
Q ss_pred HhcccCCCCCCChhhhhccccCCCCCCchhhhHHHHHHHHHhcChHHHhcCCCCCCCCCCchhhHhHHHHHHHHHCCCcc
Q 012773 316 NAFDDDKQPYLPKHILYRQKEQFSDGVGYSWIDGLRDHANKQVTDAMLANSSFVYPENTPTTKEAYYYRTIFEKFFPKNA 395 (456)
Q Consensus 316 ~a~~~~~~~~LP~~i~~R~K~~f~~~~~~~w~~~l~~~~~~~l~d~~l~~~~~~~~~~~p~~ke~~~~~~~~~~~~~~~~ 395 (456)
+||++ +||++|+||+|+||+.|++++|++.++++++++++|+.+++++..++.++|.|||+||||+||++|||+++
T Consensus 434 ~a~~~----~LP~~i~~R~K~~f~~p~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~f~~~~~~~~ 509 (553)
T 1ct9_A 434 ECFEA----YLPASVAWRQKEQFSDGVGYSWIDTLKEVAAQQVSDQQLETARFRFPYNTPTSKEAYLYREIFEELFPLPS 509 (553)
T ss_dssp HHHGG----GSCHHHHTCCCCTTCCTTCHHHHHHHHHHHHHHSCHHHHHTHHHHCCSSCCCSHHHHHHHHHHHHHCCCHH
T ss_pred HHHHh----hCCHHHHcCCCcCCCCCccHhHHHHHHHHHHHHhChHHHHhhhhhcCCCCCCchhHHHHHHHHHHHCCcHH
Confidence 99999 99999999999999999998899889999999999999999998889999999999999999999999999
Q ss_pred ccccccCCcccccchhhhhhhhhhhcCCCCCCchhhhHHhHHhh
Q 012773 396 ARATVPGGPSVACSTAKAVEWDAAWSKNPDPSGRAALGVHAAAY 439 (456)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~ 439 (456)
+..++|.+++|+||++++..|+++|.++.|||||++ ++|.+++
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~d~s~r~~-~~~~~~~ 552 (553)
T 1ct9_A 510 AAECVPGGPSVACSSAKAIEWDEAFKKMDDPSGRAV-GVHQSAY 552 (553)
T ss_dssp HHHHSCC-------------------------------------
T ss_pred HHhhCCCCCCcccccHHHhhhhhhhCcCCCCcchhh-hhhhccC
Confidence 999999999999999999999999999999999976 9998876
No 2
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=100.00 E-value=1.6e-67 Score=557.30 Aligned_cols=332 Identities=26% Similarity=0.371 Sum_probs=281.9
Q ss_pred CcceeEEEEEEECCCCEEEEEeccCCCccEEEEEecCCeEEEecccchhhhcc----------------CccEEeCCCcE
Q 012773 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDC----------------ERFISFPPGHI 64 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~~----------------~~I~~lpPG~~ 64 (456)
+|+|||||+|||.++ ++++|||+|+|||||+.. ++.++||||+|+|...+ ++|++|||||+
T Consensus 116 ~l~G~fA~~i~d~~~--l~~aRD~~G~kPLyy~~~-~~~~~faSe~~aL~~~~~~~~~~l~~~~~~t~~~~i~~l~pG~~ 192 (513)
T 1jgt_A 116 LVNGRFATVVRTGDR--VLLATDHAGSVPLYTCVA-PGEVRASTEAKALAAHRDPKGFPLADARRVAGLTGVYQVPAGAV 192 (513)
T ss_dssp TCCEEEEEEEEETTE--EEEEECTTCCSCCEEEEE-TTEEEEESCHHHHHTC--CCCCCCTTSEECSSCSSCEECCTTEE
T ss_pred hcCeeEEEEEEECCE--EEEEECCCCCceeEEEEe-CCEEEEcchHHHHHhccCcccccccCCCccccccceEEcCCCcE
Confidence 589999999999854 999999999999999986 78999999999998865 89999999999
Q ss_pred EEec--CCe--EEEeeCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhh
Q 012773 65 YSSK--QGG--LRRWYNPPCYSEQIPSNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAA 140 (456)
Q Consensus 65 ~~~~--~~~--~~~y~~~~~~~~~~~~~~~~~~~lr~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~ 140 (456)
+.++ +++ .++||++.... ...+.++.+++++++|.+||++|+.+|+|+|++||||+|||+|++++++..
T Consensus 193 l~i~~~~g~~~~~~yw~~~~~~-~~~~~~~~~~~l~~~L~~aV~~rl~sd~~vgv~LSGGlDSS~vaala~~~~------ 265 (513)
T 1jgt_A 193 MDIDLGSGTAVTHRTWTPGLSR-RILPEGEAVAAVRAALEKAVAQRVTPGDTPLVVLSGGIDSSGVAACAHRAA------ 265 (513)
T ss_dssp EEEETTTTEEEEEECCCCCCSC-BCCCHHHHHHHHHHHHHHHHHHHSCTTCCCEEECCSSHHHHHHHHHHHHHH------
T ss_pred EEEEcCCCCEEEEeecCCcccc-cCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCcHHHHHHHHHHHHhC------
Confidence 9887 554 57899986542 223445678899999999999999999999999999999999999998875
Q ss_pred hhcCCcccceeccCCCCchHHHHHHHHHHhCCCceEEEeChhhHHHHHHHHHHhhccCCcccccchHHHHHHHHHHHhCC
Q 012773 141 CQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLG 220 (456)
Q Consensus 141 ~~~~~~l~tfsig~~~~~e~~~A~~vA~~lg~~h~~~~~~~~~~~~~l~~~i~~~e~~~~~~i~~~~~~~~l~~~a~~~g 220 (456)
.+++|||+++++.+|..+|+++|+++|++|+++.++++++.+.+++++++++++++....+.+++|++++.+ +.|
T Consensus 266 ----~~v~tfti~~~~~~E~~~A~~vA~~lg~~h~~i~i~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~a-~~g 340 (513)
T 1jgt_A 266 ----GELDTVSMGTDTSNEFREARAVVDHLRTRHREITIPTTELLAQLPYAVWASESVDPDIIEYLLPLTALYRAL-DGP 340 (513)
T ss_dssp ----SSCEEEEEECSSCCCHHHHHHHHHHHTCEEEEEECCHHHHHTTHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-CSS
T ss_pred ----CCceEEEcCCCCCCHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHHHhCCCCcccchhHHHHHHHHHHH-HcC
Confidence 379999999998899999999999999999999999999999999999988876543344567888888877 578
Q ss_pred CcEEEEcCchhhhccCCccccCCCChHHHHHHHHHHHHhchhhhhhhhccccc----cCCceecCCCCCHHHHHHHhcCC
Q 012773 221 VKMVISGEGSDEIFGGYLYFHKAPNKEEFHQETCRKIKALHLYDCLRANKSTS----AWGVEARVPFLDKEFINTAMSID 296 (456)
Q Consensus 221 ~~vvLsG~GgDElfgGy~~~~~~p~~~~~~~e~~~~~~~l~~~dllr~dr~~~----a~gle~r~PflD~~lve~a~slP 296 (456)
++|+|||+||||+||||.+| |....+..| .+.+++.++++ ||++| ++|+|+|+||||++|||||++||
T Consensus 341 ~~VvltG~GaDElfgGY~~~---~~~~~l~~e---~l~~l~~~~ll--Dr~sm~la~a~glE~R~PfLD~~lve~a~~lP 412 (513)
T 1jgt_A 341 ERRILTGYGADIPLGGMHRE---DRLPALDTV---LAHDMATFDGL--NEMSPVLSTLAGHWTTHPYWDREVLDLLVSLE 412 (513)
T ss_dssp CCEEECCTTTHHHHTTTCCC---SCCHHHHHH---HHHHHHHCTTC--CTTCTHHHHTTTCEEECGGGSHHHHHHHHHBC
T ss_pred CCEEEeCCChhhcccCcccc---CChhhcCHH---HHHHHhhccch--hhhhhhhhhhcCcceECCCCCHHHHHHHHcCC
Confidence 99999999999999999977 444456555 34566777887 99999 99999999999999999999999
Q ss_pred ccccccCCCCCCcchHHHHHhcccCCCCCCChhhhhccccCCCCCCchhhhHHHHHHH-HHhcChHHHhc
Q 012773 297 PEWKMVRPDLGRIEKWILRNAFDDDKQPYLPKHILYRQKEQFSDGVGYSWIDGLRDHA-NKQVTDAMLAN 365 (456)
Q Consensus 297 ~~~k~~~~~~~~~~K~lLR~a~~~~~~~~LP~~i~~R~K~~f~~~~~~~w~~~l~~~~-~~~l~d~~l~~ 365 (456)
+++|+++ +.+|+|||+||++ +||++|++|+|+||+.|+++.|+ +++++ +++++++.++.
T Consensus 413 ~~~k~~~----~~~K~iLR~a~~~----~lP~~i~~R~K~gf~~p~~~~~~--l~~~~~~~~~~~~~~~~ 472 (513)
T 1jgt_A 413 AGLKRRH----GRDKWVLRAAMAD----ALPAETVNRPKLGVHEGSGTTSS--FSRLLLDHGVAEDRVHE 472 (513)
T ss_dssp HHHHEET----TEETHHHHHHHTT----TSCHHHHHSCCC---------CH--HHHHHHHHCCCTTSHHH
T ss_pred HHHhcCC----CCCHHHHHHHHHh----hCCHHHHhCCcCCCCCChhHHHH--HHHHHHHhhcCHHHHHH
Confidence 9999985 5789999999999 99999999999999999998887 78898 88888876654
No 3
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=100.00 E-value=6.4e-67 Score=551.84 Aligned_cols=355 Identities=24% Similarity=0.378 Sum_probs=289.7
Q ss_pred CcceeEEEEEEECCCCEEEEEeccCCCccEEEEEecCCe-----------------EEEecccchhhhc--------cCc
Q 012773 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGS-----------------IWFASEMKALSDD--------CER 55 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~~~~-----------------~~faSeik~L~~~--------~~~ 55 (456)
+|+|+|||++||..++ ++++|||+|+|||||+.. ++. ++||||+++|... +++
T Consensus 99 ~l~G~fa~~i~d~~~~-l~~aRD~~G~rPL~y~~~-~~~~~t~~l~l~~~~~~~~~~~faSE~~al~~~~~~~~~T~~~~ 176 (503)
T 1q15_A 99 LAEGDFCFFIDEPNGE-LTVITESRGFSPVHVVQG-KKAWMTNSLKLVTAAEGEGALWFEEEALVCQSLMRADTYTPVKN 176 (503)
T ss_dssp GCCSSEEEEEECTTSC-EEEEECSSSSSCCEEEES-SSEEEESCHHHHHHHHCTTSSCBCCHHHHTTCSCCCTTCCSBTT
T ss_pred HcCEEEEEEEEeCCCC-EEEEECCCCCeeEEEEEe-CCceecccccccccccCCcceEEecchHHHHhccCCCCCcccCC
Confidence 5899999999999888 999999999999999985 667 9999999999887 899
Q ss_pred cEEeCCCcEEEecCC------eEEEeeCCCCCCC-CCCCCCCcHHHHHHHHHHHHHHhhhcCCCeEEeccCcccHHHHHH
Q 012773 56 FISFPPGHIYSSKQG------GLRRWYNPPCYSE-QIPSNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAA 128 (456)
Q Consensus 56 I~~lpPG~~~~~~~~------~~~~y~~~~~~~~-~~~~~~~~~~~lr~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaa 128 (456)
|++|||||++.++.+ ..++||++..... ...+.++.+++++++|.+||++|+.+|+|+|++||||+|||+|++
T Consensus 177 v~~l~pG~~~~i~~~g~~~~~~~~~yw~~~~~~~~~~~~~~~~~~~l~~~L~~aV~~rl~sd~~v~v~LSGGlDSs~vaa 256 (503)
T 1q15_A 177 AQRLKPGAVHVLTHDSEGYSFVESRTLTTPASNQLLALPREPLLALIDRYLNAPLEDLAPRFDTVGIPLSGGLDSSLVTA 256 (503)
T ss_dssp EEECCSSEEEEEEECTTCCEEEEEEESCCCCCCSCBCCCHHHHHHHHHHHHHHHHHHHGGGCSEEEEECCSSHHHHHHHH
T ss_pred eEEECCCeEEEEeCCCcccccceeeecCCcccccccCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCCHHHHHHHH
Confidence 999999999987532 2678999865421 222445678899999999999999999999999999999999999
Q ss_pred HHHHHhchhhhhhhcCCcccceeccCCCCchHHHHHHHHHHhCCCceEEEeChhhHHHHHHHHHHhhccCCcccccchHH
Q 012773 129 VASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTP 208 (456)
Q Consensus 129 la~~~~~~~~~~~~~~~~l~tfsig~~~~~e~~~A~~vA~~lg~~h~~~~~~~~~~~~~l~~~i~~~e~~~~~~i~~~~~ 208 (456)
++++.. .++++||+++++.+|..+|+++|+++|++|+++.++++++.+.+++++++++.|++....+.++
T Consensus 257 la~~~~----------~~~~~~t~~~~~~~E~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~ 326 (503)
T 1q15_A 257 LASRHF----------KKLNTYSIGTELSNEFEFSQQVADALGTHHQMKILSETEVINGIIESIYYNEIFDGLSAEIQSG 326 (503)
T ss_dssp HHTTTC----------SEEEEEEEEETTBCCHHHHHHHHHHHTCEEEEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred HHHHhC----------CCcEEEEEeCCCccHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHHHHHhcCCCcccchhHHH
Confidence 998754 4689999999888999999999999999999999999999999999999988765444445678
Q ss_pred HHHHHHHHHhCCCcEEEEcCchhhhccCCccc-cCCCChHHHHHHHHHHHHhchhhhhhhhccccccCCceecCCCCCHH
Q 012773 209 MFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF-HKAPNKEEFHQETCRKIKALHLYDCLRANKSTSAWGVEARVPFLDKE 287 (456)
Q Consensus 209 ~~~l~~~a~~~g~~vvLsG~GgDElfgGy~~~-~~~p~~~~~~~e~~~~~~~l~~~dllr~dr~~~a~gle~r~PflD~~ 287 (456)
+|++++.+ +.|++|+|||+||||+|+||.+| ...|....+..|.++++. +++.|.||++|++|+|+|+||||++
T Consensus 327 ~~~l~~~a-~~~~~VvltG~GaDElf~GY~~~~~~~~~~~~l~~e~~~r~~----~~L~r~Dr~~ma~glE~R~PfLD~~ 401 (503)
T 1q15_A 327 LFNVYRQA-QGQVSCMLTGYGSDLLFGGILKPGAQYDNPNQLLAEQVYRTR----WTGEFATHGASCYGIDIRHPFWSHS 401 (503)
T ss_dssp HHHHHHHH-BTTBSEEECCTTHHHHHTTTSCTTCCCSCHHHHHHHHHHHHH----HHSTTCCHHHHHTTCEEECTTCCHH
T ss_pred HHHHHHHH-HCCCCEEEeCCChhhhccChHHHHHhcCCHHHHhHHHHHHHH----HhhhhhhHHHHHcCCCEECCCCCHH
Confidence 89999988 57899999999999999999887 456666666666665554 6788999999999999999999999
Q ss_pred HHHHHhcCCccccccCCCCCCcchHHHHHhcccCCCCCCChhhhhccccCCCCCCchhhhHHHHHHHHHhcChHHHhcCC
Q 012773 288 FINTAMSIDPEWKMVRPDLGRIEKWILRNAFDDDKQPYLPKHILYRQKEQFSDGVGYSWIDGLRDHANKQVTDAMLANSS 367 (456)
Q Consensus 288 lve~a~slP~~~k~~~~~~~~~~K~lLR~a~~~~~~~~LP~~i~~R~K~~f~~~~~~~w~~~l~~~~~~~l~d~~l~~~~ 367 (456)
|||||++||+++|+.+ +.+|+|||+||+++. +||++|++|+|+||+.|++..|+. . +++.. .
T Consensus 402 lve~a~~lP~~~k~~~----~~~K~iLR~a~~~~~--~lP~~i~~R~K~gf~~~~~~~~~~--~----~~~~~-----~- 463 (503)
T 1q15_A 402 LISLCHALHPDYKIFD----NEVKNILREYADSLQ--LLPKDIVWRKKIGIHEGSSVNQAF--A----NVLGS-----T- 463 (503)
T ss_dssp HHHHHHTBCGGGTEET----TEESHHHHHHHHHTS--CSCHHHHCC---------CHHHHH--H----HHHTS-----C-
T ss_pred HHHHHHhCCHHHHhCC----CCcHHHHHHHHhcCC--cCCHHHhcCCCCCCCCCcchHHHH--H----HHhcc-----c-
Confidence 9999999999999975 578999999999732 699999999999999999876542 1 12211 0
Q ss_pred CCCCCCCCchhhHhHHHHHHHHHCCCcc
Q 012773 368 FVYPENTPTTKEAYYYRTIFEKFFPKNA 395 (456)
Q Consensus 368 ~~~~~~~p~~ke~~~~~~~~~~~~~~~~ 395 (456)
..+ ..+|+.|+| +||+++|+++.
T Consensus 464 ---~~~-~~~k~~~~y-~~~~~~~~~~~ 486 (503)
T 1q15_A 464 ---VDN-YQTKSRFTY-RVYQAFLRGRL 486 (503)
T ss_dssp ---TTC-HHHHHHHHH-HHHHHHHTTSS
T ss_pred ---ccC-CCchhHHHH-HHHHHHcCCCC
Confidence 111 467877555 79999999853
No 4
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*
Probab=99.48 E-value=1.6e-13 Score=142.94 Aligned_cols=116 Identities=25% Similarity=0.308 Sum_probs=88.4
Q ss_pred CcceeEEEEEEECCCCEEEEEeccCCCccEEEEEecCCeEEEecccchhhhc-cCccEEeCCCcEEEecCCe--EEEeeC
Q 012773 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD-CERFISFPPGHIYSSKQGG--LRRWYN 77 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~-~~~I~~lpPG~~~~~~~~~--~~~y~~ 77 (456)
+|+|+|||++|| .++++++|||+|+|||||+.. ++.++||||+++|... .++|+.|+||+++.++.+. ..+||.
T Consensus 153 ~l~G~fa~~i~d--~~~l~~~RD~~G~rPL~~~~~-~~~~~~ASE~~al~~~~~~~i~~l~pG~~~~i~~~~~~~~~~~~ 229 (459)
T 1ao0_A 153 MLKGAYAFLIMT--ETEMIVALDPNGLRPLSIGMM-GDAYVVASETCAFDVVGATYLREVEPGEMLIINDEGMKSERFSM 229 (459)
T ss_dssp TCCEEEEEEEEC--SSEEEEEECTTCCSCCEEEEE-TTEEEEESSTHHHHHHTCEEEEECCTTEEEEEETTEEEEEESCS
T ss_pred hhccceEEEEEe--CCEEEEEECCCCCCCeEEEec-CCEEEEEECchHHhcCCCceEEEECCCEEEEEECCceEEEecCC
Confidence 589999999999 479999999999999999987 6789999999999885 6899999999999887654 457887
Q ss_pred CCCCC--------CCCC---CCCCcHHHHHHHHHHHHHHhhh--cCCCeEEeccC
Q 012773 78 PPCYS--------EQIP---SNPYDPLVLRKAFEKAVVKRLM--TDVPFGVLLSG 119 (456)
Q Consensus 78 ~~~~~--------~~~~---~~~~~~~~lr~~L~~AV~~rl~--sd~~vgv~LSG 119 (456)
+.... ...| ...+.+.+.+..|.+.+.+.+. .|.-+++..||
T Consensus 230 ~~~~~~c~feyiyfarp~s~~~~~~v~~~r~~lg~~La~~~~~~~DvVV~VP~~g 284 (459)
T 1ao0_A 230 NINRSICSMEYIYFSRPDSNIDGINVHSARKNLGKMLAQESAVEADVVTGVPDSS 284 (459)
T ss_dssp SCCCCEEHHHHHTTSCTTCEETTEEHHHHHHHHHHHHHHHHCCCCSEEECCTTTT
T ss_pred CccccccceeeeeccCCcchhccHhHHHHHHHHHHHHHHhcccCCcEEEEECCcH
Confidence 53210 0112 1345678899999999988663 34334444443
No 5
>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A*
Probab=99.20 E-value=3.5e-11 Score=114.66 Aligned_cols=70 Identities=31% Similarity=0.513 Sum_probs=62.3
Q ss_pred CcceeEEEEEEECC-CCEEEEEeccCCCccEEEEEecCCeEEEecccchhhhccCccEEeCCCcEEEecCCeEEE
Q 012773 1 MLDGMFSFVLLDTR-DKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGGLRR 74 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~-~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~~~~I~~lpPG~~~~~~~~~~~~ 74 (456)
+|+|+|||++||.+ .++|+++||+ |||||+.. ++.++||||+++|.....++..||||+++.++.+.++.
T Consensus 151 ~l~G~fa~~i~d~~~~~~l~~~Rd~---~PL~~~~~-~~~~~~aSE~~al~~~~~~~~~l~pG~~~~i~~~~~~~ 221 (240)
T 1xff_A 151 QLRGAYGTVIMDSRHPDTLLAARSG---SPLVIGLG-MGENFIASDQLALLPVTRRFIFLEEGDIAEITRRSVNI 221 (240)
T ss_dssp GCCEEEEEEEEETTCTTCEEEEEEB---SCCEEEEC-SSCEEEESSGGGTTTTCSEEEECCTTCEEEECSSCEEE
T ss_pred hcccceEEEEEecCCCCEEEEEECC---CceEEEEe-CCEEEEEECHHHHHhhCCeEEEECCCEEEEEECCeEEE
Confidence 48999999999975 6899999998 99999986 67899999999999888899999999999987666543
No 6
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=99.16 E-value=2.9e-11 Score=116.30 Aligned_cols=132 Identities=20% Similarity=0.263 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCchHHHHHHHHHHhC
Q 012773 92 PLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLG 171 (456)
Q Consensus 92 ~~~lr~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~e~~~A~~vA~~lg 171 (456)
.+++.+.+.+.+++. ...++++.||||+||+++++++.+.... .++.++++....+.|...|+++|+.+|
T Consensus 6 ~~~~~~~l~~~i~~~--~~~~vvv~lSGGiDSs~~~~l~~~~~g~--------~~v~av~~~~~~~~~~~~a~~~a~~lg 75 (257)
T 2e18_A 6 YDKVIERILEFIREK--GNNGVVIGISGGVDSATVAYLATKALGK--------EKVLGLIMPYFENKDVEDAKLVAEKLG 75 (257)
T ss_dssp HHHHHHHHHHHHHHH--CTTCEEEECCSSHHHHHHHHHHHHHHCG--------GGEEEEECCSSCSTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh--CCCcEEEEecCCHHHHHHHHHHHHhcCC--------CcEEEEEeCCCCchHHHHHHHHHHHhC
Confidence 456777777777776 5568999999999999999999887631 367888876543378999999999999
Q ss_pred CCceEEEeChhhHHHHHHHHHHhhccCCcc---cccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCc
Q 012773 172 TRHHEFHFTVQEGIDALEEVIYHIETYDVT---TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 238 (456)
Q Consensus 172 ~~h~~~~~~~~~~~~~l~~~i~~~e~~~~~---~i~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGy~ 238 (456)
++|+++.+++ ..+.+.+.+.. ..... .+.+-+-+..+.+.+++.|+.++.||+. ||.+.||.
T Consensus 76 i~~~~i~i~~--~~~~~~~~l~~--~~~~~~~~n~~ar~r~~~l~~~A~~~g~~vl~tg~~-~e~~~Gy~ 140 (257)
T 2e18_A 76 IGYKVINIKP--IVDSFVENLEL--NLDRKGLGNIMSRTRMIMLYAHANSLGRIVLGTSNR-SEFLTGYF 140 (257)
T ss_dssp CEEEECCCHH--HHHHHHHHHCS--CCCHHHHHHHHHHHHHHHHHHHHHHHTCEEECCCCH-HHHHHTCS
T ss_pred CCEEEEEChH--HHHHHHHHhcc--ccccchhHHHHHHHHHHHHHHHHHHcCCEEEEcCch-hHHhcCCe
Confidence 9998887654 22222221111 00000 0111123455677788889999999985 66777874
No 7
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A
Probab=99.15 E-value=4.8e-11 Score=115.75 Aligned_cols=144 Identities=15% Similarity=0.145 Sum_probs=88.4
Q ss_pred CCcHHHHHHHHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcC-CcccceeccCCCCchHHHHHHHH
Q 012773 89 PYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWG-SQLHSFCIGLEGSPDLKAAREVA 167 (456)
Q Consensus 89 ~~~~~~lr~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~-~~l~tfsig~~~~~e~~~A~~vA 167 (456)
++.++.+...|.+.|+++... .+.+.||||+|||++++++++....-+.. .+ .++.++++.+....|...|+++|
T Consensus 19 ~~~i~~~~~~L~d~v~~~g~~--~vvvgLSGGvDSsv~a~La~~a~~~lg~~--~~~~~v~av~~~~~~~~d~~~A~~va 94 (271)
T 1kqp_A 19 KQEIEDRVNFLKQYVKKTGAK--GFVLGISGGQDSTLAGRLAQLAVESIREE--GGDAQFIAVRLPHGTQQDEDDAQLAL 94 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC--EEEEECCSSHHHHHHHHHHHHHHHHHHHT--TCCCEEEEEECCSSSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCC--CEEEECCCCHHHHHHHHHHHHHHHHhccc--CCCceEEEEEeCCCCCCCHHHHHHHH
Confidence 344667888888888876543 56788999999999999988765210000 00 13455555432234789999999
Q ss_pred HHhCC-CceEEEeChhhHHHHHHHHHHhh-ccCCcccccch----HHHHHHHHHHHhCCCcEEEEcCchhhhccCCcc
Q 012773 168 DYLGT-RHHEFHFTVQEGIDALEEVIYHI-ETYDVTTIRAS----TPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 239 (456)
Q Consensus 168 ~~lg~-~h~~~~~~~~~~~~~l~~~i~~~-e~~~~~~i~~~----~~~~~l~~~a~~~g~~vvLsG~GgDElfgGy~~ 239 (456)
+++|+ +|+++.+++ ..+.+.+.+... +.+........ +-+..++..|.+.|. +++++.+.||++.||..
T Consensus 95 ~~lgi~~~~~i~i~~--~~~~~~~~l~~~~~~~~~~~~~~N~~aR~r~~~l~~~A~~~g~-lvl~tgn~~E~~~Gy~t 169 (271)
T 1kqp_A 95 KFIKPDKSWKFDIKS--TVSAFSDQYQQETGDQLTDFNKGNVKARTRMIAQYAIGGQEGL-LVLGTDHAAEAVTGFFT 169 (271)
T ss_dssp HHHCCSEEEECCCHH--HHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHTC-EEBCCCCHHHHTTTCSC
T ss_pred HhcCCCeEEEeccHH--HHHHHHHHHhhhcCCCCcchhhhhHHHHHHHHHHHHHHHHCCC-EEEECccHHHhccCCcc
Confidence 99999 888877654 334444333332 21111111011 223445566666665 56777778999999853
No 8
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=99.15 E-value=8.8e-11 Score=109.67 Aligned_cols=119 Identities=19% Similarity=0.318 Sum_probs=74.7
Q ss_pred cCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCC--CCchHHHHHHHHHHhCCCceEEEeCh-hhHH
Q 012773 109 TDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--GSPDLKAAREVADYLGTRHHEFHFTV-QEGI 185 (456)
Q Consensus 109 sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~--~~~e~~~A~~vA~~lg~~h~~~~~~~-~~~~ 185 (456)
++.+++++||||+||++++.++.+.. .++.++++.+. ...|..+++++|+++|++|+++.++. .++.
T Consensus 2 ~~~~v~v~lSGG~DS~~ll~ll~~~~----------~~v~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~~~~~~~~~~~ 71 (219)
T 3bl5_A 2 KKEKAIVVFSGGQDSTTCLLWALKEF----------EEVETVTFHYNQRHSQEVEVAKSIAEKLGVKNHLLDMSLLNQLA 71 (219)
T ss_dssp -CCEEEEECCSSHHHHHHHHHHHHHC----------SEEEEEEEESSCTTCHHHHHHHHHHHTTCCCEEEEECGGGGGGS
T ss_pred CCCCEEEEccCcHHHHHHHHHHHHcC----------CceEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEeChHHhhhc
Confidence 35689999999999999999998754 36777877543 34689999999999999999998764 2211
Q ss_pred -HHH--HHHHH--hhccCCcccccchHHHH--HHHHHHHhCCCcEEEEcCchhhhccCCc
Q 012773 186 -DAL--EEVIY--HIETYDVTTIRASTPMF--LMSRKIKSLGVKMVISGEGSDEIFGGYL 238 (456)
Q Consensus 186 -~~l--~~~i~--~~e~~~~~~i~~~~~~~--~l~~~a~~~g~~vvLsG~GgDElfgGy~ 238 (456)
+.+ +.+.. .......+++.+-...| ++.+.+++.|+++++||+++|+. +||+
T Consensus 72 ~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~a~~~g~~~i~tG~~~dd~-~~~~ 130 (219)
T 3bl5_A 72 PNALTRNDIEIEVKDGELPSTFVPGRNLVFLSFASILAYQIGARHIITGVCETDF-SGYP 130 (219)
T ss_dssp TGGGC--------------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCC-----CCG
T ss_pred ccccccccccccccccCCCCceeechHHHHHHHHHHHHHHcCCCEEEEecccccc-CCCC
Confidence 001 01100 00011111222222234 44677888899999999999995 5664
No 9
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=99.14 E-value=4.1e-11 Score=116.06 Aligned_cols=129 Identities=18% Similarity=0.161 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCC--CchHHHHHHHHHH
Q 012773 92 PLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEG--SPDLKAAREVADY 169 (456)
Q Consensus 92 ~~~lr~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~--~~e~~~A~~vA~~ 169 (456)
.+.+...|++.|++. ...++++.||||+||+++++++.+..+ .++.++++.+.. ..|...|+++|+.
T Consensus 9 ~~~l~~~l~~~v~~~--~~~~vvv~lSGGiDSsv~~~l~~~~~~---------~~v~av~~~~~~~~~~e~~~a~~~a~~ 77 (268)
T 1xng_A 9 IVYLCDFLEKEVQKR--GFKKVVYGLSGGLDSAVVGVLCQKVFK---------ENAHALLMPSSVSMPENKTDALNLCEK 77 (268)
T ss_dssp HHHHHHHHHHHHHHT--TCCCEEEECCSSHHHHHHHHHHHHHHG---------GGEEEEECCCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--CCCCEEEEccCcHHHHHHHHHHHHhCC---------CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 455666666666543 245799999999999999999988652 368888887653 2588999999999
Q ss_pred hCCCceEEEeChhhHHHHHHHHHHhhccCCcccccc----hHHHHHHHHHHHhCCCcEEEEcCchhhhccCCc
Q 012773 170 LGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRA----STPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 238 (456)
Q Consensus 170 lg~~h~~~~~~~~~~~~~l~~~i~~~e~~~~~~i~~----~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGy~ 238 (456)
+|++|+++.+++ ..+.+.+ .+.... +.... -+-+..+.+.|++.|+.|+.||+ .||.|.||.
T Consensus 78 lgi~~~~i~i~~--~~~~~~~---~~~~~~-~~~~~n~~~r~R~~~l~~~A~~~g~~vl~tg~-~~E~~~Gy~ 143 (268)
T 1xng_A 78 FSIPYTEYSIAP--YDAIFSS---HFKDAS-LTRKGNFCARLRMAFLYDYSLKSDSLVIGTSN-KSERMLGYG 143 (268)
T ss_dssp HTCCEEECCCHH--HHHHHHH---HCTTCC-HHHHHHHHHHHHHHHHHHHHHHHTCEEBCCCC-HHHHHHTCS
T ss_pred cCCCEEEEeChH--HHHHHHH---HhhhcC-CchHHHHHHHHHHHHHHHHHHHCCCEEEECCc-HHHHhcCcc
Confidence 999998887654 2222111 111100 00111 12244566778888998887876 588888884
No 10
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=99.03 E-value=3.8e-10 Score=121.02 Aligned_cols=135 Identities=19% Similarity=0.149 Sum_probs=93.0
Q ss_pred cHHHHHHHHHHHHHHhhhc--CCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCC--chHHHHHHH
Q 012773 91 DPLVLRKAFEKAVVKRLMT--DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGS--PDLKAAREV 166 (456)
Q Consensus 91 ~~~~lr~~L~~AV~~rl~s--d~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~--~e~~~A~~v 166 (456)
..+++.+.+...+++++.. ...+.+.||||+|||++++++.+.++. .++.++++....+ .|...|+++
T Consensus 305 ~~~~~~~~~~~~l~~~~~~~g~~~vvvglSGGvDSsv~a~la~~alG~--------~~v~~v~m~~~~~~~~~~~~A~~l 376 (590)
T 3n05_A 305 ADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGA--------QNVYGVSMPSKYSSDHSKGDAAEL 376 (590)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCCEEEECCSSHHHHHHHHHHHHHHCG--------GGEEEEECCCSSCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCcEEEEcCCCHHHHHHHHHHHHHhCc--------ccEEEEEECCCCCCHHHHHHHHHH
Confidence 3567777777777777653 357899999999999999999887531 3688888876543 588999999
Q ss_pred HHHhCCCceEEEeChhhHHHHHHHHHHhhccCCc--ccccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCcc
Q 012773 167 ADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDV--TTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 239 (456)
Q Consensus 167 A~~lg~~h~~~~~~~~~~~~~l~~~i~~~e~~~~--~~i~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGy~~ 239 (456)
|+++|++|+++.+++. .+.+.+.+ ...+. ..+.+-+-+..+...+.+.|..|+.|| +.||++.||..
T Consensus 377 a~~lgi~~~~i~i~~~--~~~~~~~l---~~~~~~~~n~~ar~r~~~l~~~A~~~g~~vl~TG-n~se~~~Gy~t 445 (590)
T 3n05_A 377 ARRTGLNFRTVSIEPM--FDAYMASL---GLTGLAEENLQSRLRGTTLMAISNQEGHIVLAPG-NKSELAVGYST 445 (590)
T ss_dssp HHHHTCEEEECCSHHH--HHHHHHHH---CCCTHHHHHHHHHHHHHHHHHHHHHHTCEEBCCC-CHHHHHHTCCC
T ss_pred HHHcCCcEEEEEChHH--HHHHHHHh---cccchhhhHHHHHHHHHHHHHHHHhcCCEEEeCC-CHHHHhcCchh
Confidence 9999999998876542 22222111 11110 011112334456666777899999999 77889988853
No 11
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*
Probab=99.00 E-value=1.4e-10 Score=125.99 Aligned_cols=258 Identities=16% Similarity=0.101 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHHhhhcC--CCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCC--chHHHHHHHH
Q 012773 92 PLVLRKAFEKAVVKRLMTD--VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGS--PDLKAAREVA 167 (456)
Q Consensus 92 ~~~lr~~L~~AV~~rl~sd--~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~--~e~~~A~~vA 167 (456)
.+++.+.+...+++++... ..+.+.||||+||++.+.++++....-+. -..++.++++....+ .+...|+++|
T Consensus 341 ~~~~~~~~~~~l~~~l~~~g~~~vvvglSGGvDSsvaa~l~~~a~~~lg~---~~~~v~~v~m~~~~~~~~~~~~A~~la 417 (680)
T 3sdb_A 341 CYEAYNIQVSGLEQRLRALDYPKVVIGVSGGLDSTHALIVATHAMDREGR---PRSDILAFALPGFATGEHTKNNAIKLA 417 (680)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCEEEEECCSSHHHHHHHHHHHHHHHHTTC---CGGGEEEEECCC--------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcEEEEecCCccHHHHHHHHHHHHHHhCC---CCceEEEEEECCCCCCHHHHHHHHHHH
Confidence 3567777777787777643 46889999999999866666654311000 003577777764332 4678899999
Q ss_pred HHhCCCceEEEeChhhHHHHHHHHHHh-h--cc--CCcc--cccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCccc
Q 012773 168 DYLGTRHHEFHFTVQEGIDALEEVIYH-I--ET--YDVT--TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 240 (456)
Q Consensus 168 ~~lg~~h~~~~~~~~~~~~~l~~~i~~-~--e~--~~~~--~i~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGy~~~ 240 (456)
+.+|++|+++.+++ .++...+.+.. . .. .+.+ .+.+-+-+-.+...+.+.|.-|+-|| ..+|++.||...
T Consensus 418 ~~lgi~~~~i~i~~--~~~~~~~~l~~~~~~~~~~~~~~~~N~~ar~R~~~l~~~A~~~g~lvlgTg-n~sE~~~Gy~T~ 494 (680)
T 3sdb_A 418 RALGVTFSEIDIGD--TARLMLHTIGHPYSVGEKVYDVTFENVQAGLRTDYLFRIANQRGGIVLGTG-DLSELALGWSTY 494 (680)
T ss_dssp HHHTCEEEECCCHH--HHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHHHTEEEEECC-CHHHHHHTCSCC
T ss_pred HHcCCCEEEEECHH--HHHHHHHHhchhhcCCCCCcchhHHHhhHHHHHHHHHHHHHHcCCEEEeCC-cHHhHhcCeeec
Confidence 99999998887653 22222111110 0 00 1110 01111112234445566676444455 456777788432
Q ss_pred c--C-----CCChHHHHHHHHHHH-HhchhhhhhhhccccccCCceecCCCCCHHHHHHHhcCCccccccCCCCCCcchH
Q 012773 241 H--K-----APNKEEFHQETCRKI-KALHLYDCLRANKSTSAWGVEARVPFLDKEFINTAMSIDPEWKMVRPDLGRIEKW 312 (456)
Q Consensus 241 ~--~-----~p~~~~~~~e~~~~~-~~l~~~dllr~dr~~~a~gle~r~PflD~~lve~a~slP~~~k~~~~~~~~~~K~ 312 (456)
. . .|... +.+..++.+ +.+.....+..+.......+--+.|+-+-.-++.-.....+..+.+ ...-..
T Consensus 495 ~~gD~~~~~~Pl~~-l~K~eVr~lar~l~~~~~~~~~~~~ip~~i~~k~Ps~eL~p~~~~~~q~de~~lg~---Y~~~D~ 570 (680)
T 3sdb_A 495 GVGDQMSHYNVNAG-VPKTLIQHLIRWVISAGEFGEKVGEVLQSVLDTEITPELIPTGEEELQSSEAKVGP---FALQDF 570 (680)
T ss_dssp SSSTTCCSEETTTT-SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHC-------------CHHHHCC---HHHHHH
T ss_pred cCCCccccccccCC-CcHHHHHHHHHHHHhhccccccccCchHHHhcCCCCcCcCCCCCCCCCCchhhcCC---HHHHHH
Confidence 2 1 13321 222222221 1111000000000001111223334433321111112223333311 122367
Q ss_pred HHHHhcccCCCCCCChhhhhccccCCCCCCchhhhHHHHHHHHHhcChHH
Q 012773 313 ILRNAFDDDKQPYLPKHILYRQKEQFSDGVGYSWIDGLRDHANKQVTDAM 362 (456)
Q Consensus 313 lLR~a~~~~~~~~LP~~i~~R~K~~f~~~~~~~w~~~l~~~~~~~l~d~~ 362 (456)
+|+..++.- +.|++|.++-|..|.+..+..|-..+.+..+...+++.
T Consensus 571 ~L~~~~~~~---~~~~~i~~~~~~a~~~~~~~~~~~~~~~~~~~~y~~~~ 617 (680)
T 3sdb_A 571 SLFQVLRYG---FRPSKIAFLAWHAWNDAERGNWPPGFPKSERPSYSLAE 617 (680)
T ss_dssp HHHHHHHHC---CCHHHHHHHHHHHHSCTTSSCCCSSCCGGGCCCCCHHH
T ss_pred HHHHHHHCC---CCHHHHHHHHHHHhccccccccccccchhhhcCCCHHH
Confidence 888887741 88999999999999887666676544433333333333
No 12
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A*
Probab=98.97 E-value=7.2e-10 Score=116.63 Aligned_cols=68 Identities=24% Similarity=0.337 Sum_probs=58.6
Q ss_pred CcceeEEEEEEECCCCEEEEEeccCCCccEEEEEec--C--CeEEEecccchhhhc-cCccEEeCCCcEEEecC
Q 012773 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGL--D--GSIWFASEMKALSDD-CERFISFPPGHIYSSKQ 69 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~--~--~~~~faSeik~L~~~-~~~I~~lpPG~~~~~~~ 69 (456)
+|+|+|||++|+.. ++|+++|||+|+|||||+... + +.++||||.++|... ++.|+.|+||+++.++.
T Consensus 162 ~l~G~fa~v~~~~~-~~l~a~RD~~GirPL~~g~~~~~~g~~~~~~ASE~~al~~~~~~~v~~l~PGe~v~i~~ 234 (504)
T 1ecf_A 162 LIRGAYACVAMIIG-HGMVAFRDPNGIRPLVLGKRDIDENRTEYMVASESVALDTLGFDFLRDVAPGEAIYITE 234 (504)
T ss_dssp HCCEEEEEEEEETT-TEEEEEECTTCCSCCEEEEEECSSSCEEEEEESSTHHHHHHTCEEEEECCTTEEEEEET
T ss_pred hcCccceEEEEEcC-CeEEEEECCCCCCceEEeecccCCCceEEEEEeCchHhhccCccEEEECCCCeEEEEeC
Confidence 37899999999854 579999999999999999862 3 479999999999876 57799999999988863
No 13
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=98.96 E-value=1.3e-09 Score=101.17 Aligned_cols=109 Identities=23% Similarity=0.222 Sum_probs=73.6
Q ss_pred CCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCchHHHHHHHHHHhCCCceEEEeChhhHHHHHH
Q 012773 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALE 189 (456)
Q Consensus 110 d~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~e~~~A~~vA~~lg~~h~~~~~~~~~~~~~l~ 189 (456)
-.++++++|||+||++++.++.+.. .++.++++.+...+|..+++++|+.+|++|+.+.++.+..-+.++
T Consensus 6 ~~kv~v~~SGG~DS~~ll~ll~~~g----------~~v~~~~v~~~~~~~~~~~~~~a~~lgi~~~~~~~~~~~~~~~~~ 75 (203)
T 3k32_A 6 LMDVHVLFSGGKDSSLSAVILKKLG----------YNPHLITINFGVIPSYKLAEETAKILGFKHKVITLDRKIVEKAAD 75 (203)
T ss_dssp CEEEEEECCCSHHHHHHHHHHHHTT----------EEEEEEEEECSSSCTTHHHHHHHHHHTCEEEEEECCTHHHHHHHH
T ss_pred CCeEEEEEECcHHHHHHHHHHHHcC----------CCeEEEEEeCCCchHHHHHHHHHHHhCCCEEEEECCHHHHHHHHH
Confidence 3579999999999999999887643 467778776544348899999999999999999988643222232
Q ss_pred HHHHhhccCCcccccchHH-HHHHHHHHHhCCCcEEEEcCchhhhc
Q 012773 190 EVIYHIETYDVTTIRASTP-MFLMSRKIKSLGVKMVISGEGSDEIF 234 (456)
Q Consensus 190 ~~i~~~e~~~~~~i~~~~~-~~~l~~~a~~~g~~vvLsG~GgDElf 234 (456)
..... +.+ ...+... .+++.+.+ + |+++++||+..|...
T Consensus 76 ~~~~~-~~~---~~~c~~~~~~~l~~~A-~-g~~~i~tGh~~dD~~ 115 (203)
T 3k32_A 76 MIIEH-KYP---GPAIQYVHKTVLEILA-D-EYSILADGTRRDDRV 115 (203)
T ss_dssp HHHHH-SSS---HHHHHHHHHHHHHHHT-T-TCSEEECCCCTTCCS
T ss_pred HHHhc-CCC---ccHHHHHHHHHHHHHh-c-CCCEEEECCCcccch
Confidence 22211 111 1112222 23333333 3 899999999999876
No 14
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=98.87 E-value=2.1e-09 Score=102.81 Aligned_cols=134 Identities=15% Similarity=0.178 Sum_probs=85.5
Q ss_pred CcHHHHHHHHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCC--CchHHHHHHHH
Q 012773 90 YDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEG--SPDLKAAREVA 167 (456)
Q Consensus 90 ~~~~~lr~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~--~~e~~~A~~vA 167 (456)
+..+.+.+.|++.|++.- ...+.+.||||+||+++++++.+... ..+ ++++.... ..|...|+++|
T Consensus 11 ~~~~~l~~~l~~~v~~~~--~~~vvv~lSGGiDSsv~a~l~~~~~~---------~~~-av~~~~~~~~~~~~~~a~~~a 78 (249)
T 3fiu_A 11 EYSQKLVNWLSDSCMNYP--AEGFVIGLSGGIDSAVAASLAVKTGL---------PTT-ALILPSDNNQHQDMQDALELI 78 (249)
T ss_dssp HHHHHHHHHHHHHHHTTT--CSEEEEECCSSHHHHHHHHHHHHTTS---------CEE-EEECCCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC--CCCEEEEecCcHHHHHHHHHHHHhCC---------CCE-EEEecCCCCCHHHHHHHHHHH
Confidence 345677777777777643 34689999999999999999988653 234 77776542 35789999999
Q ss_pred HHhCCCceEEEeChhhHHHHHHHHHH-hhccCCcccccc-----h-HHHHHHHHHHHhCCCcEEEEcCchhhhccCCc
Q 012773 168 DYLGTRHHEFHFTVQEGIDALEEVIY-HIETYDVTTIRA-----S-TPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 238 (456)
Q Consensus 168 ~~lg~~h~~~~~~~~~~~~~l~~~i~-~~e~~~~~~i~~-----~-~~~~~l~~~a~~~g~~vvLsG~GgDElfgGy~ 238 (456)
+.+|++|+++.+++ ..+.+.+.+. .++....++..+ . +-+..+...|++.|+.++-||+ .||.+.||.
T Consensus 79 ~~lgi~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ni~~r~R~~~l~~~A~~~g~~vl~TGn-~sE~~~G~~ 153 (249)
T 3fiu_A 79 EMLNIEHYTISIQP--AYEAFLASTQSFTNLQNNRQLVIKGNAQARLRMMYLYAYAQQYNRIVIGTDN-ACEWYMGYF 153 (249)
T ss_dssp HHHTCEEEECCCHH--HHHHHHHHTGGGC------CHHHHHHHHHHHHHHHHHHHHHHHTEEEBCCCC-HHHHHHTCS
T ss_pred HHhCCCEEEEEChH--HHHHHHHHHHhhccCCCCcChhHHHHHHHHHHHHHHHHHHHHcCCEEEECCC-HHHHhcCch
Confidence 99999998887643 2232222111 001000011000 1 1123456667788999999995 568877774
No 15
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*
Probab=98.84 E-value=4.2e-09 Score=113.31 Aligned_cols=68 Identities=32% Similarity=0.544 Sum_probs=61.3
Q ss_pred CcceeEEEEEEECCC-CEEEEEeccCCCccEEEEEecCCeEEEecccchhhhccCccEEeCCCcEEEecCCeE
Q 012773 1 MLDGMFSFVLLDTRD-KSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGGL 72 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~-~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~~~~I~~lpPG~~~~~~~~~~ 72 (456)
+|+|+|||++||.++ ++++++||+ +||||+.. ++.++||||+++|....+.+..|+||+++.++.+.+
T Consensus 151 ~l~G~fa~~i~d~~~~~~l~~aRd~---~PL~~g~~-~~~~~~aSe~~al~~~~~~~~~l~~G~i~~i~~~~~ 219 (608)
T 2bpl_A 151 QLRGAYGTVIMDSRHPDTLLAARSG---SPLVIGLG-MGENFIASDQLALLPVTRRFIFLEEGDIAEITRRSV 219 (608)
T ss_dssp GCCSSEEEEEEETTCTTCEEEEEEB---SCCEEEEC-SSCEEEESSGGGTTTTCCEEEECCTTCEEEECSSCE
T ss_pred hhcCceEEEEEecCCCCEEEEEECC---CceEEEEe-CCeEEEEechHHHHhcCCeEEEECCCeEEEEECCeE
Confidence 489999999999987 899999998 99999986 678999999999999889999999999988765544
No 16
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=98.84 E-value=1.2e-08 Score=99.05 Aligned_cols=143 Identities=11% Similarity=0.041 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhh-hcCCcccceeccCCCCchHHHHHHHHHHh
Q 012773 92 PLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAAC-QWGSQLHSFCIGLEGSPDLKAAREVADYL 170 (456)
Q Consensus 92 ~~~lr~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~-~~~~~l~tfsig~~~~~e~~~A~~vA~~l 170 (456)
++.+...|.+.|++.- ....+.+.||||+|||++++++++....-+... .-+.++.++++.+....|...|+++|+.+
T Consensus 23 i~~~~~~L~~~l~~~g-~~~~vvvglSGGvDSsv~a~L~~~a~~~lg~~~~~~~~~v~av~~~~~~~~~~~dA~~va~~l 101 (275)
T 1wxi_A 23 IRRSVDFLKSYLQTYP-FIKSLVLGISGGQDSTLAGKLCQMAINELRLETGNESLQFIAVRLPYGVQADEQDCQDAIAFI 101 (275)
T ss_dssp HHHHHHHHHHHHHHST-TCCEEEEECCSSHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECCSSSCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-CCCCEEEECcCcHHHHHHHHHHHHHHHHhccccccccceEEEEEeCCCCccCHHHHHHHHHHc
Confidence 3445555555554421 023688999999999999998887652100000 00025667776654345889999999999
Q ss_pred CC-CceEEEeChhhHHHHHHHHHHhhccCCcccccch----HHHHHHHHHHHhCCCcEEEEcCchhhhccCCc
Q 012773 171 GT-RHHEFHFTVQEGIDALEEVIYHIETYDVTTIRAS----TPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 238 (456)
Q Consensus 171 g~-~h~~~~~~~~~~~~~l~~~i~~~e~~~~~~i~~~----~~~~~l~~~a~~~g~~vvLsG~GgDElfgGy~ 238 (456)
|+ +|+++.+++ ..+.+.+.+...+.......... +-+..+...|.+.|..|+-|| ..+|++.||.
T Consensus 102 gi~~~~~i~i~~--~~~~~~~~l~~~g~~~~~~~~~N~~aR~r~~~l~~~A~~~g~lvlgTg-n~~E~~~Gy~ 171 (275)
T 1wxi_A 102 QPDRVLTVNIKG--AVLASEQALREAGIELSDFVRGNEKARERMKAQYSIAGMTSGVVVGTD-HAAEAITGFF 171 (275)
T ss_dssp CCSEEEECCCHH--HHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCC-CHHHHTTTCS
T ss_pred CCCeEEEEecHH--HHHHHHHHHHhcCCCCCCchhhhhhhhHHHHHHHHHHHHCCCEEEECc-cHHHHccCcc
Confidence 99 888877653 33333322222111111111111 112234455666776555454 5578888884
No 17
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=98.83 E-value=3.4e-09 Score=101.35 Aligned_cols=128 Identities=19% Similarity=0.183 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCC--CchHHHHHHHHHHh
Q 012773 93 LVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEG--SPDLKAAREVADYL 170 (456)
Q Consensus 93 ~~lr~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~--~~e~~~A~~vA~~l 170 (456)
+.+...|.+.|++. ....+.+.||||+||+++++++.+..+ .++.++++.... ..|...|+++|+.+
T Consensus 11 ~~l~~~l~d~v~~~--g~~~vvv~lSGGiDSsv~a~l~~~~~g---------~~v~av~~~~~~~~~~~~~~a~~~a~~l 79 (249)
T 3p52_A 11 EKMCDFIQEKVKNS--QSQGVVLGLSGGIDSALVATLCKRALK---------ENVFALLMPTQISNKANLEDALRLCADL 79 (249)
T ss_dssp HHHHHHHHHHHHTS--SCSEEEEECCSSHHHHHHHHHHHHHHT---------TSEEEEECCSCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCEEEEcCCCHHHHHHHHHHHHHcC---------CcEEEEEecCCCCCHHHHHHHHHHHHHh
Confidence 34444555555432 245789999999999999999988653 468888876543 35789999999999
Q ss_pred CCCceEEEeChhhHHHHHHHHHHhhccCCcccccch----HHHHHHHHHHHhCCCcEEEEcCchhhhccCCc
Q 012773 171 GTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRAS----TPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 238 (456)
Q Consensus 171 g~~h~~~~~~~~~~~~~l~~~i~~~e~~~~~~i~~~----~~~~~l~~~a~~~g~~vvLsG~GgDElfgGy~ 238 (456)
|++|+++.+++ ..+.+ ...+.+.+. ...+. +-+..+...|++.|+.|+-||+- ||++.||.
T Consensus 80 gi~~~~v~i~~--~~~~~---~~~~~~~~~-~~~~n~~~r~R~~~l~~~A~~~g~~vl~tgn~-se~~~g~~ 144 (249)
T 3p52_A 80 NLEYKIIEIQS--ILDAF---IKQSENTTL-VSLGNFAARIRMSLLYDYSALKNSLVIGTSNK-SELLLGYG 144 (249)
T ss_dssp TCEEEECCCHH--HHHHH---HTTCSCCCH-HHHHHHHHHHHHHHHHHHHHHTTEEEBCCCCH-HHHHHTCS
T ss_pred CCCEEEEECcH--HHHHH---HHhccccCC-ccHhHHHHHHHHHHHHHHHHHCCCeEEeCCCH-HHHHccch
Confidence 99998876643 22221 111111111 01111 11234566777888876666664 56655664
No 18
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=98.82 E-value=1.3e-08 Score=96.03 Aligned_cols=116 Identities=22% Similarity=0.297 Sum_probs=75.1
Q ss_pred CeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCC--CCchHHHHHHHHHHhCCC-ceEEEeCh-hhHHH-
Q 012773 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--GSPDLKAAREVADYLGTR-HHEFHFTV-QEGID- 186 (456)
Q Consensus 112 ~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~--~~~e~~~A~~vA~~lg~~-h~~~~~~~-~~~~~- 186 (456)
++.+++|||+||+++++++.+.. .++.++++.+. ...|..+|+++|+++|++ |+++.++. +++..
T Consensus 4 kvvv~lSGG~DS~~~l~ll~~~~----------~~v~av~~~~g~~~~~e~~~a~~~a~~lgi~~~~vi~~~~l~~~~~~ 73 (232)
T 2pg3_A 4 RAVVVFSGGQDSTTCLIQALQDY----------DDVHCITFDYGQRHRAEIEVAQELSQKLGAAAHKVLDVGLLNELATS 73 (232)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHC----------SEEEEEEEESSSSCHHHHHHHHHHHHHHTCSEEEEEECTHHHHTSHH
T ss_pred CEEEEecCcHHHHHHHHHHHHcC----------CCEEEEEEECCCCCHHHHHHHHHHHHHhCCCceEEEeChhHHHHhhh
Confidence 68999999999999999988754 35777776543 336889999999999999 99998872 32221
Q ss_pred HHHHH---H----HhhccCCcccccchHHHH--HHHHHHHhCCCcEEEEcCchhhhccCCc
Q 012773 187 ALEEV---I----YHIETYDVTTIRASTPMF--LMSRKIKSLGVKMVISGEGSDEIFGGYL 238 (456)
Q Consensus 187 ~l~~~---i----~~~e~~~~~~i~~~~~~~--~l~~~a~~~g~~vvLsG~GgDElfgGy~ 238 (456)
.+.+. + +..+....+++.+-...| +..+.|.+.|+++|++|+.+|+.. ||+
T Consensus 74 ~l~~~~~~v~~~~~~~~~~~~~~~~~R~~~~~~la~~~A~~~g~~~I~~G~~~~D~~-~~~ 133 (232)
T 2pg3_A 74 SLTRDSIPVPDYDANAQGIPNTFVPGRNILFLTLASIYAYQVGAEAVITGVCETDFS-GYP 133 (232)
T ss_dssp HHHHTTCCCCC---------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCSCSSS-CCG
T ss_pred hcccccccccccccccCCCCCCeEechHHHHHHHHHHHHHHcCcCEEEEccCccccC-CCC
Confidence 12110 0 001111112222222222 225677788999999999999875 454
No 19
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=98.64 E-value=9.9e-08 Score=94.02 Aligned_cols=125 Identities=18% Similarity=0.203 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccC--CCCchHHHHHH-HHHHh
Q 012773 94 VLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGL--EGSPDLKAARE-VADYL 170 (456)
Q Consensus 94 ~lr~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~--~~~~e~~~A~~-vA~~l 170 (456)
.+.+...+.++..+. +.++.++||||+||++++.++.+..+ .++.++++.. ....|...+++ +++++
T Consensus 5 ~~~~~~~~~ir~~v~-~~kvlvalSGGvDSsvla~ll~~~~g---------~~v~av~vd~g~~~~~e~~~~~~~~a~~l 74 (308)
T 2dpl_A 5 RFVEEKVREIRETVG-DSKAIIALSGGVDSSTAAVLAHKAIG---------DRLHAVFVNTGFLRKGEPEFVVKTFRDEF 74 (308)
T ss_dssp HHHHHHHHHHHHHHT-TSCEEEECCSSHHHHHHHHHHHHHHG---------GGEEEEEEECSCCCTTHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhC-CCCEEEEEeChHHHHHHHHHHHHhhC---------CCEEEEEEcCCCCChHHHHHHHHHHHHHc
Confidence 444445555666554 45899999999999999999988742 3677777643 23457778887 66789
Q ss_pred CCCceEEEeChhhHHHHHHHHHHhhccCCccc-ccchHHHHHHHHHHHhCCCcEEEEcCchhhh
Q 012773 171 GTRHHEFHFTVQEGIDALEEVIYHIETYDVTT-IRASTPMFLMSRKIKSLGVKMVISGEGSDEI 233 (456)
Q Consensus 171 g~~h~~~~~~~~~~~~~l~~~i~~~e~~~~~~-i~~~~~~~~l~~~a~~~g~~vvLsG~GgDEl 233 (456)
|++|+.+.++.. +.+.+.. ...+.... +........+.+.|++.|++.+++|+..|.+
T Consensus 75 gi~~~vv~~~~~-f~~~l~~----~~~pe~~~~~~~~~~~~~l~~~A~~~g~~~la~Gh~~dD~ 133 (308)
T 2dpl_A 75 GMNLHYVDAQDR-FFSALKG----VTDPEEKRKIIGRVFIEVFEEVAKKIGAEYLIQGTIAPDW 133 (308)
T ss_dssp CCEEEEEECHHH-HHHHTTT----CCCHHHHHHHHHHHHHHHHHHHHHHHTCSEEECCCCCC--
T ss_pred CCcEEEEECCHH-HHHhhhC----CCCHHHHHHHHHHHHHHHHHHHHHHcCcCEEEECCCCccc
Confidence 999999887532 2221110 00010000 0001112345667788899999999988754
No 20
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=98.61 E-value=9.7e-08 Score=97.57 Aligned_cols=110 Identities=18% Similarity=0.152 Sum_probs=73.6
Q ss_pred cCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCchHHHHHHHHHHhCCC-ceEEEeChhhHHH-
Q 012773 109 TDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTR-HHEFHFTVQEGID- 186 (456)
Q Consensus 109 sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~e~~~A~~vA~~lg~~-h~~~~~~~~~~~~- 186 (456)
+..++++++|||+||++++.++.+.. ..+.++++.+....|...++++|+.+|++ ++++.++ +++.+
T Consensus 4 ~~~kVvvalSGGlDSsvll~lL~e~G----------~eV~av~vd~g~~~e~e~a~~~A~~lGi~~~~vvd~~-~ef~~~ 72 (413)
T 2nz2_A 4 SKGSVVLAYSGGLDTSCILVWLKEQG----------YDVIAYLANIGQKEDFEEARKKALKLGAKKVFIEDVS-REFVEE 72 (413)
T ss_dssp -CEEEEEECCSSHHHHHHHHHHHHTT----------EEEEEEEEESSCCCCHHHHHHHHHHHTCSEEEEEECH-HHHHHH
T ss_pred CCCeEEEEEcChHHHHHHHHHHHHcC----------CEEEEEEEECCcHHHHHHHHHHHHHhCCCEEEEEeCh-HHHHHH
Confidence 34579999999999999999998752 46888887665457899999999999998 6666664 33332
Q ss_pred HHHHHHHhhcc----CCcc-c-ccchHHHHHHHHHHHhCCCcEEEEcCch
Q 012773 187 ALEEVIYHIET----YDVT-T-IRASTPMFLMSRKIKSLGVKMVISGEGS 230 (456)
Q Consensus 187 ~l~~~i~~~e~----~~~~-~-i~~~~~~~~l~~~a~~~g~~vvLsG~Gg 230 (456)
.+...+..... +... . .+. ...-.+.+.|++.|++++.+|+.+
T Consensus 73 ~~~~~i~~~a~~e~~y~~g~~~aRp-~i~~~l~~~A~~~Ga~~IatGh~~ 121 (413)
T 2nz2_A 73 FIWPAIQSSALYEDRYLLGTSLARP-CIARKQVEIAQREGAKYVSHGATG 121 (413)
T ss_dssp THHHHHHTTCCBTTTBCCTTTTHHH-HHHHHHHHHHHHHTCSEEECCCCT
T ss_pred HHHHHHHhCcccccccccccccchH-HHHHHHHHHHHHcCCCEEEECCcC
Confidence 22233322111 1110 0 010 112345677888899999999987
No 21
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=98.60 E-value=2.3e-07 Score=91.78 Aligned_cols=126 Identities=10% Similarity=0.072 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHh--hhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCc-ccceecc--CCC-C-chHHHHHH
Q 012773 93 LVLRKAFEKAVVKR--LMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQ-LHSFCIG--LEG-S-PDLKAARE 165 (456)
Q Consensus 93 ~~lr~~L~~AV~~r--l~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~-l~tfsig--~~~-~-~e~~~A~~ 165 (456)
..+.+.+.+++++. +....++.+++|||.||++++.++.+.... ++.+ +.++++. ... + .|..++++
T Consensus 5 ~~~~~~~~~~i~~~~l~~~~~~vlva~SGG~DS~~Ll~ll~~~~~~------~g~~~v~av~vd~g~r~~s~~~~~~v~~ 78 (317)
T 1wy5_A 5 SRVIRKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLKNY------FSLKEVALAHFNHMLRESAERDEEFCKE 78 (317)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECCSSHHHHHHHHHHHHSTTT------TTCSEEEEEEEECCSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEEecchHHHHHHHHHHHHHHHH------cCCCEEEEEEEECCCCcccHHHHHHHHH
Confidence 45677778888765 445678999999999999999998875321 1235 6666664 332 2 47889999
Q ss_pred HHHHhCCCceEEEeChhhHHHHHHHHHHhhccCCcccccchHHHH-HHHHHHHhCCCcEEEEcCchhhh
Q 012773 166 VADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEI 233 (456)
Q Consensus 166 vA~~lg~~h~~~~~~~~~~~~~l~~~i~~~e~~~~~~i~~~~~~~-~l~~~a~~~g~~vvLsG~GgDEl 233 (456)
+|+.+|++++.+.++..++.+. . ..+ +...+....| .+.+.+++.|++++++|+-+|+.
T Consensus 79 ~a~~lgi~~~v~~~~~~~~~~~-------~-~~~-~e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~dD~ 138 (317)
T 1wy5_A 79 FAKERNMKIFVGKEDVRAFAKE-------N-RMS-LEEAGRFLRYKFLKEILESEGFDCIATAHHLNDL 138 (317)
T ss_dssp HHHHHTCCEEEEECCHHHHHHH-------T-TCC-HHHHHHHHHHHHHHHHHHHTTCSEEECCCCHHHH
T ss_pred HHHHcCCcEEEEEEechhhhcc-------C-CCC-HHHHHHHHHHHHHHHHHHHcCCCEEEEeCchhHH
Confidence 9999999999998875432211 0 011 0000112233 45667788899999999999864
No 22
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=98.59 E-value=8.1e-08 Score=97.21 Aligned_cols=113 Identities=19% Similarity=0.161 Sum_probs=75.9
Q ss_pred CCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCC--C--------CchHHHHHHHHHHhCCCceEEEe
Q 012773 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--G--------SPDLKAAREVADYLGTRHHEFHF 179 (456)
Q Consensus 110 d~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~--~--------~~e~~~A~~vA~~lg~~h~~~~~ 179 (456)
..++.+++|||+||++++.++.+.. .++.++++... + ..|...|+++|+.+|++|+.+.+
T Consensus 9 ~~kVlVa~SGGvDSsv~a~lL~~~G----------~~V~~v~~~~~~~~~~~~~c~~~~d~~~a~~va~~lGIp~~vv~~ 78 (376)
T 2hma_A 9 KTRVVVGMSGGVDSSVTALLLKEQG----------YDVIGIFMKNWDDTDENGVCTATEDYKDVVAVADQIGIPYYSVNF 78 (376)
T ss_dssp GSEEEEECCSSHHHHHHHHHHHHTT----------CEEEEEEEECCCCCC----CHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCeEEEEEeCHHHHHHHHHHHHHcC----------CcEEEEEEECCCcccccccCCCHHHHHHHHHHHHHhCCcEEEEeC
Confidence 3479999999999999999998753 46777766432 1 14688999999999999999998
Q ss_pred ChhhHHHH-HHHHHHhh---ccCCcccccchHH--HHHHHHHHHhCCCcEEEEcCchhhhc
Q 012773 180 TVQEGIDA-LEEVIYHI---ETYDVTTIRASTP--MFLMSRKIKSLGVKMVISGEGSDEIF 234 (456)
Q Consensus 180 ~~~~~~~~-l~~~i~~~---e~~~~~~i~~~~~--~~~l~~~a~~~g~~vvLsG~GgDElf 234 (456)
+.+ +.+. +...+... .+++ +++.+... +..+.+.|++.|++.+.||+.+|...
T Consensus 79 ~~~-~~~~v~~~~l~~y~~G~tpn-pc~~C~r~ik~~~l~~~A~~~G~d~IatGH~a~d~~ 137 (376)
T 2hma_A 79 EKE-YWDRVFEYFLAEYRAGRTPN-PDVMCNKEIKFKAFLDYAITLGADYVATGHYARVAR 137 (376)
T ss_dssp HHH-HHHHTHHHHHHHHHTTCCCC-HHHHHHHHTTTTHHHHHHHTTTCSEEECCCSEEEEE
T ss_pred hHH-HHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHHHHHHHHhCCCCEEEECcchhhhh
Confidence 643 2221 12222111 1222 22222211 12456778889999999999998754
No 23
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=98.57 E-value=1.1e-07 Score=96.69 Aligned_cols=108 Identities=18% Similarity=0.137 Sum_probs=73.2
Q ss_pred CCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCchHHHHHHHHHHhCC-CceEEEeChhhHHHH-H
Q 012773 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGT-RHHEFHFTVQEGIDA-L 188 (456)
Q Consensus 111 ~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~e~~~A~~vA~~lg~-~h~~~~~~~~~~~~~-l 188 (456)
.++.+++|||+|||++++++.+.. ..+.++++......|...|+++|+.+|+ +|+++.+. +++.+. +
T Consensus 15 ~KVVVA~SGGlDSSv~a~~Lke~G----------~eViavt~d~Gq~~Ele~A~~vA~~lGi~~~~VvDl~-eef~~~v~ 83 (421)
T 1vl2_A 15 EKVVLAYSGGLDTSVILKWLCEKG----------FDVIAYVANVGQKDDFVAIKEKALKTGASKVYVEDLR-REFVTDYI 83 (421)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHTT----------CEEEEEEEESSCCCCHHHHHHHHHHHTCSEEEEEECH-HHHHHHTH
T ss_pred CCEEEEeCCcHHHHHHHHHHHHCC----------CeEEEEEEEcCCHHHHHHHHHHHHHcCCceEEEEecH-HHHHHhhh
Confidence 468999999999999999998763 4678888765444789999999999999 89988875 334332 2
Q ss_pred HHHHHhh---c-cCCcccc--cchHHHHHHHHHHHhCCCcEEEEcCch
Q 012773 189 EEVIYHI---E-TYDVTTI--RASTPMFLMSRKIKSLGVKMVISGEGS 230 (456)
Q Consensus 189 ~~~i~~~---e-~~~~~~i--~~~~~~~~l~~~a~~~g~~vvLsG~Gg 230 (456)
...+... + .|..++. +..+ .-.+.+.|++.|++.|.+|.-+
T Consensus 84 ~p~i~~na~yeg~Y~~g~~l~Rp~i-~~~l~~~A~~~Gad~IA~G~~~ 130 (421)
T 1vl2_A 84 FTALLGNAMYEGRYLLGTAIARPLI-AKRQVEIAEKEGAQYVAHGATG 130 (421)
T ss_dssp HHHHTTTCCBTTTBCCHHHHHHHHH-HHHHHHHHHHHTCSEEECCCCT
T ss_pred hHHHhcCCcccCceeCCCcccHHHH-HHHHHHHHHHcCCCEEEECCee
Confidence 2222211 1 1221111 1111 1235567788899999999986
No 24
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=98.56 E-value=2.1e-07 Score=94.85 Aligned_cols=109 Identities=17% Similarity=0.214 Sum_probs=73.3
Q ss_pred CeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCchHHHHHHHHHHhCC-CceEEEeChhhHHHH-HH
Q 012773 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGT-RHHEFHFTVQEGIDA-LE 189 (456)
Q Consensus 112 ~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~e~~~A~~vA~~lg~-~h~~~~~~~~~~~~~-l~ 189 (456)
++++++|||+|||+++.++.+... ..+.++++......|...++++|+.+|+ +++++.++. ++.+. ..
T Consensus 2 kVvva~SGG~DSsvll~ll~~~~g---------~~V~av~vd~g~~~e~e~a~~~A~~lGi~~~~vvd~~~-ef~~~~~~ 71 (400)
T 1kor_A 2 KIVLAYSGGLDTSIILKWLKETYR---------AEVIAFTADIGQGEEVEEAREKALRTGASKAIALDLKE-EFVRDFVF 71 (400)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHT---------CEEEEEEEESSCSSCHHHHHHHHHHHTCSEEEEEECHH-HHHHHTHH
T ss_pred cEEEEEeChHHHHHHHHHHHHhhC---------CcEEEEEEeCCCHHHHHHHHHHHHHhCCCeEEEEeCcH-HHHHHhhH
Confidence 588999999999999999987642 4677888765445689999999999999 677777653 33322 22
Q ss_pred HHHHhhcc----CCccc--ccchHHHHHHHHHHHhCCCcEEEEcCchh
Q 012773 190 EVIYHIET----YDVTT--IRASTPMFLMSRKIKSLGVKMVISGEGSD 231 (456)
Q Consensus 190 ~~i~~~e~----~~~~~--i~~~~~~~~l~~~a~~~g~~vvLsG~GgD 231 (456)
..+..... +...+ .+..+ ...+.+.|++.|++++++|+.+|
T Consensus 72 ~~i~~~~~~e~~y~~g~~~~R~~~-~~~L~~~A~~~G~~~IatG~~~d 118 (400)
T 1kor_A 72 PMMRAGAVYEGYYLLGTSIARPLI-AKHLVRIAEEEGAEAIAHGATGK 118 (400)
T ss_dssp HHHHTTCCBTTTBCCTTTTHHHHH-HHHHHHHHHHHTCSEEECCCCTT
T ss_pred HHHHcCCccccccccCCccchHHH-HHHHHHHHHHcCCCEEEECCCCC
Confidence 22222111 21111 11111 23566778888999999999986
No 25
>3mdn_A Glutamine aminotransferase class-II domain protei; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi}
Probab=98.55 E-value=6.5e-08 Score=93.69 Aligned_cols=66 Identities=20% Similarity=0.175 Sum_probs=51.4
Q ss_pred EEEEEEECCCCEEEEEecc-CCCccEEEEEecC--CeEEEecccchhhhccCccEEeCCCcEEEecCCeEEEe
Q 012773 6 FSFVLLDTRDKSFIAARDA-IGVTPLYMGWGLD--GSIWFASEMKALSDDCERFISFPPGHIYSSKQGGLRRW 75 (456)
Q Consensus 6 Fa~~i~D~~~~~l~laRD~-~G~~PLyy~~~~~--~~~~faSeik~L~~~~~~I~~lpPG~~~~~~~~~~~~y 75 (456)
|+|+++|. ++|+++||+ +|++||+|+...+ +.++||||. |......++.|+||+++.++.+.++.+
T Consensus 187 ~~~~~~d~--~~l~a~Rd~~~G~~Pll~~~~~~~~~~~~vASE~--l~~~~~~~~~v~pGeiv~i~~~~v~~~ 255 (274)
T 3mdn_A 187 LSAAFSDG--QTLYAARYSSDHIAPSVYYRYSHARQGWAVVSEP--LETDEGDWTELRPGRMLTIGAEGAAER 255 (274)
T ss_dssp EEEEEECS--SCEEEEEEESSSCCCCCEEEEETTTTEEEEESSC--C--CCSCCEECCSSEEEEEETTEEEEE
T ss_pred EEEEEEcC--CEEEEEECCCCCCCCeEEEEEeCCCCEEEEEecc--cccCCceEEEECcCEEEEEeCCeEEEE
Confidence 99999985 689999998 9999955554433 789999998 433447899999999999887765443
No 26
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=98.44 E-value=3.4e-07 Score=92.70 Aligned_cols=112 Identities=23% Similarity=0.252 Sum_probs=73.7
Q ss_pred CCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccC--CC--------CchHHHHHHHHHHhCCCceEEEe
Q 012773 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGL--EG--------SPDLKAAREVADYLGTRHHEFHF 179 (456)
Q Consensus 110 d~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~--~~--------~~e~~~A~~vA~~lg~~h~~~~~ 179 (456)
..++.+++|||+||++++.++.+.. .++.++++.. .+ ..|...|+++|+.+|++|+.+.+
T Consensus 17 ~~kVvVa~SGGvDSsv~a~lL~~~G----------~~V~~v~~~~~~~~~~~~~~~s~~d~~~a~~va~~LGIp~~vvd~ 86 (380)
T 2der_A 17 AKKVIVGMSGGVDSSVSAWLLQQQG----------YQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGIELHTVNF 86 (380)
T ss_dssp CCEEEEECCSCSTTHHHHHHHHTTC----------CEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCEEEEEEEChHHHHHHHHHHHHcC----------CeEEEEEEEcCccccccCCCCCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 4579999999999999999998753 4677777643 21 14688999999999999999987
Q ss_pred ChhhHHHH-HHHHHHhh---ccCCcccccchHH--HHHHHHHHHh-CCCcEEEEcCchhhh
Q 012773 180 TVQEGIDA-LEEVIYHI---ETYDVTTIRASTP--MFLMSRKIKS-LGVKMVISGEGSDEI 233 (456)
Q Consensus 180 ~~~~~~~~-l~~~i~~~---e~~~~~~i~~~~~--~~~l~~~a~~-~g~~vvLsG~GgDEl 233 (456)
+.+ +.+. +...+... .+++ +++.+... .-.+.+.|++ .|++.+.||+.+|..
T Consensus 87 ~~~-f~~~v~~~~~~ey~~G~tpn-pc~~Cnr~ik~~~l~~~A~~~~Gad~IatGH~a~d~ 145 (380)
T 2der_A 87 AAE-YWDNVFELFLAEYKAGRTPN-PDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRA 145 (380)
T ss_dssp HHH-HHHHTHHHHHHHHHTTCCCC-HHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSCEEE
T ss_pred cHH-HHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHHHHHHHHhhcCCCEEEEccccccc
Confidence 643 2221 11112111 1222 22222211 1245566777 899999999998864
No 27
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0
Probab=98.42 E-value=4.7e-07 Score=87.70 Aligned_cols=88 Identities=10% Similarity=0.071 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhh-hhcCCcccceeccCCCCchHHHHHHHHHHh
Q 012773 92 PLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAA-CQWGSQLHSFCIGLEGSPDLKAAREVADYL 170 (456)
Q Consensus 92 ~~~lr~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~-~~~~~~l~tfsig~~~~~e~~~A~~vA~~l 170 (456)
++.+...|.+.|++. .-..+.+.||||+||+++++++++....-+.. ...+.++.++++.+....|...|+++|+.+
T Consensus 24 i~~~v~~L~d~l~~~--g~~~vvvglSGGvDSal~a~l~~~A~~~Lg~~~~~~~~~v~av~~p~~~~~~~~~A~~~a~~l 101 (279)
T 3q4g_A 24 IERRVAFIKRKLTEA--RYKSLVLGISGGVDSTTCGRLAQLAVEELNQQHNTTEYQFIAVRLPYGEQKDEDEAQLALSFI 101 (279)
T ss_dssp HHHHHHHHHHHHHHH--TCCEEEEECCSSHHHHHHHHHHHHHHHHHHHHTTCSCCEEEEEECCSSSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc--CCCCEEEEccCCHHHHHHHHHHHHHHHHhCcccccCCceEEEEEecCCChHHHHHHHHHHHHh
Confidence 444455555555543 22468899999999999999876543210000 000124556665544345788999999999
Q ss_pred CC-CceEEEeCh
Q 012773 171 GT-RHHEFHFTV 181 (456)
Q Consensus 171 g~-~h~~~~~~~ 181 (456)
|+ +|+++.+++
T Consensus 102 gi~~~~~i~i~~ 113 (279)
T 3q4g_A 102 RPTHSVSVNIKA 113 (279)
T ss_dssp CCSEEEECCCHH
T ss_pred CCCeEEEEECHH
Confidence 99 788776643
No 28
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=98.34 E-value=5.3e-07 Score=92.69 Aligned_cols=111 Identities=22% Similarity=0.149 Sum_probs=73.1
Q ss_pred hhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCC--CchHHHHHHHHHHhCC-CceEEEeChhh
Q 012773 107 LMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEG--SPDLKAAREVADYLGT-RHHEFHFTVQE 183 (456)
Q Consensus 107 l~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~--~~e~~~A~~vA~~lg~-~h~~~~~~~~~ 183 (456)
+....+|.+++|||+|||+++.++.+.. ..+.++++.... ..|...|+++|+.+|+ +|+++.+. ++
T Consensus 7 l~~~~KVvVA~SGGlDSSvll~~L~e~G----------~eViavtvd~Gq~~~~ele~a~~~A~~lGi~~~~vvD~~-ee 75 (455)
T 1k92_A 7 LPVGQRIGIAFSGGLDTSAALLWMRQKG----------AVPYAYTANLGQPDEEDYDAIPRRAMEYGAENARLIDCR-KQ 75 (455)
T ss_dssp CCTTSEEEEECCSSHHHHHHHHHHHHTT----------CEEEEEEEECCCTTCSCTTHHHHHHHHHTCSEEEEEECH-HH
T ss_pred hcCCCeEEEEEcChHHHHHHHHHHHHcC----------CEEEEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEeCh-HH
Confidence 4455679999999999999999997752 467788765432 3588999999999999 89888875 34
Q ss_pred HHHHHHHHHHhh-----cc---CCcccc--cchHHHHHHHHHHHhCCCcEEEEcCc
Q 012773 184 GIDALEEVIYHI-----ET---YDVTTI--RASTPMFLMSRKIKSLGVKMVISGEG 229 (456)
Q Consensus 184 ~~~~l~~~i~~~-----e~---~~~~~i--~~~~~~~~l~~~a~~~g~~vvLsG~G 229 (456)
+.+.+-..+... |. |...+. |..+ .-.+.+.|++.|++.|.+|.-
T Consensus 76 f~~~v~p~i~~na~y~~eg~rcY~l~t~~aRp~i-~~~l~e~A~e~Gad~IAtGht 130 (455)
T 1k92_A 76 LVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVT-GTMLVAAMKEDGVNIWGDGST 130 (455)
T ss_dssp HHHHHHHHHHHTCCCCEETTEECCCHHHHHHHHH-HHHHHHHHHHTTCCEEECCCC
T ss_pred HHHHhHHHHHcCCcccccCceecccCCcchHHHH-HHHHHHHHHHcCCCEEEECCc
Confidence 433211222221 11 211110 1111 123567788889999999994
No 29
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=98.23 E-value=1.6e-06 Score=91.66 Aligned_cols=123 Identities=16% Similarity=0.198 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceec--cCCCCchHHHHHH-HHHHh
Q 012773 94 VLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSPDLKAARE-VADYL 170 (456)
Q Consensus 94 ~lr~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsi--g~~~~~e~~~A~~-vA~~l 170 (456)
.+.+.+.+.++..+.. .++.++||||+||++++.++.+..+ .++.++++ |+....|...+.+ +|+.+
T Consensus 215 ~~~~~~i~~i~~~v~~-~kvlvalSGGvDSsvla~ll~~~~G---------~~v~av~vd~g~~~~~e~~~~~~~~a~~l 284 (527)
T 3tqi_A 215 HIIEDSIRDIQEKVGK-EQVIVGLSGGVDSAVTATLVHKAIG---------DQLVCVLVDTGLLRLNEVDEVLNVFQKHL 284 (527)
T ss_dssp HHHHHHHHHHHHHHTT-SCEEEECTTTHHHHHHHHHHHHHHG---------GGEEEEEECCSCSCTTHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHhcCC-CeEEEEEecCcCHHHHHHHHHHHhC---------CeEEEEEeccCCCChhHHHHHHHHHHHHc
Confidence 3444444555655544 6799999999999999999988743 36777776 4444467777765 99999
Q ss_pred CCCceEEEeChhhHHHHHHHHHHhhccCCcccccc---hHHHH-HHHHHHHhCCCcEEEEcCchhhhc
Q 012773 171 GTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRA---STPMF-LMSRKIKSLGVKMVISGEGSDEIF 234 (456)
Q Consensus 171 g~~h~~~~~~~~~~~~~l~~~i~~~e~~~~~~i~~---~~~~~-~l~~~a~~~g~~vvLsG~GgDElf 234 (456)
|++|+.+.++.. +.+. ++....+.... ...++ .+.+.|++.|++.+++|+-.|.+.
T Consensus 285 gi~~~vv~~~~~-~~~~-------l~g~~~~~~~r~~~~~~~~~~~~~~A~~~g~~~la~Gh~~dD~~ 344 (527)
T 3tqi_A 285 GAKVICVDAKDR-FMKA-------LKGISDPEEKRKIAGEQFIRVFEEQAKKLNVKWLGQGTIYPDVI 344 (527)
T ss_dssp CCEEEEECCHHH-HHSS-------SSSCCCHHHHHHHHHHHHHHHHHHTTTTTTCCEEECCCCHHHHH
T ss_pred CCcEEEEeChHH-HHHh-------hcCCCChhhhhhhhHHHHHHHHHHHHHHcCCCEEEccccCCccc
Confidence 999988865432 1111 11111100000 00122 234567778999999999877765
No 30
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=98.21 E-value=4.4e-06 Score=88.16 Aligned_cols=124 Identities=15% Similarity=0.098 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccC--CCCchHHHHHH-HHHH
Q 012773 93 LVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGL--EGSPDLKAARE-VADY 169 (456)
Q Consensus 93 ~~lr~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~--~~~~e~~~A~~-vA~~ 169 (456)
+.+.+.+.+.+++.+.. .++.++||||+||+++++++.+..+ .++.++++.. ....|...+.+ +|++
T Consensus 211 ~~~~~~~~~~ir~~v~~-~~vvvalSGGvDSsv~a~ll~~a~G---------~~v~av~v~~g~~~~~e~~~~~~~la~~ 280 (525)
T 1gpm_A 211 AKIIDDAVARIREQVGD-DKVILGLSGGVDSSVTAMLLHRAIG---------KNLTCVFVDNGLLRLNEAEQVLDMFGDH 280 (525)
T ss_dssp HHHHHHHHHHHHHHHTT-CEEEEECCSSHHHHHHHHHHHHHHG---------GGEEEEEEECSCSCTTHHHHHHHHHTTT
T ss_pred HHHHHhhhhhhhhhhcc-cceEEEecCCCCHHHHHHHHHHHhC---------CCEEEEEEeCCCCCchHHHHHHHHHHHH
Confidence 45555555666666544 6899999999999999999988643 3677777643 23357777765 8999
Q ss_pred hCCCceEEEeChhhHHHHHHHHHHhhccCCccc-ccchHHHHHHHHHHHhC-CCcEEEEcCchh
Q 012773 170 LGTRHHEFHFTVQEGIDALEEVIYHIETYDVTT-IRASTPMFLMSRKIKSL-GVKMVISGEGSD 231 (456)
Q Consensus 170 lg~~h~~~~~~~~~~~~~l~~~i~~~e~~~~~~-i~~~~~~~~l~~~a~~~-g~~vvLsG~GgD 231 (456)
+|++|+.+.++. .+.+.+.. ...+.... +....-...+.+.|++. |++.+++|.-.|
T Consensus 281 lgi~~~~v~~~~-~f~~~l~~----~~~pe~~~~~~~~~~~~~l~~~A~~~~g~~~l~~Gt~~~ 339 (525)
T 1gpm_A 281 FGLNIVHVPAED-RFLSALAG----ENDPEAKRKIIGRVFVEVFDEEALKLEDVKWLAQGTIYP 339 (525)
T ss_dssp TCCCEEEEECHH-HHHHHHTT----CCCHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCCCHH
T ss_pred hCCcEEEEeccH-HHHHhhcC----CCChHHhhhhhhHHHHHHHHHHHHhcCCCCEEEeCCCCc
Confidence 999999988754 22222211 11110000 00001112345667777 899999999543
No 31
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=98.20 E-value=5.5e-06 Score=86.14 Aligned_cols=119 Identities=13% Similarity=0.094 Sum_probs=77.4
Q ss_pred HHHHHHHh--hhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceecc--CCC--C-chHHHHHHHHHHhC
Q 012773 99 FEKAVVKR--LMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEG--S-PDLKAAREVADYLG 171 (456)
Q Consensus 99 L~~AV~~r--l~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig--~~~--~-~e~~~A~~vA~~lg 171 (456)
+.+++++. +....++.|++|||.||++++.++.+...+. +.++.++++. ..+ + .|..+++++|+.+|
T Consensus 5 v~~~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~------~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lg 78 (464)
T 3a2k_A 5 VRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLRDEW------KLQVIAAHVDHMFRGRESEEEMEFVKRFCVERR 78 (464)
T ss_dssp HHHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHHHHHTT------TCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHHHHHHHc------CCeEEEEEEECCCCccccHHHHHHHHHHHHHcC
Confidence 34445543 3456689999999999999999998754221 2456666654 432 2 36789999999999
Q ss_pred CCceEEEeChhhHHHHHHHHHHhhccCCcccccchHHHH-HHHHHHHhCCCcEEEEcCchhh
Q 012773 172 TRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDE 232 (456)
Q Consensus 172 ~~h~~~~~~~~~~~~~l~~~i~~~e~~~~~~i~~~~~~~-~l~~~a~~~g~~vvLsG~GgDE 232 (456)
++++.+.++...+.+. .... +...+....| ++.+.+++.|+.+++||+-+|.
T Consensus 79 i~~~v~~~~~~~~~~~--------~~~~-~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~dD 131 (464)
T 3a2k_A 79 ILCETAQIDVPAFQRS--------AGLG-AQEAARICRYRFFAELMEKHQAGYVAVGHHGDD 131 (464)
T ss_dssp CEEEEEECCCHHHHTT--------TTCC-SHHHHHHHHHHHHHHHHHTTTCCEEECCCCHHH
T ss_pred CcEEEEEechhhhhhc--------cCCC-HHHHHHHHHHHHHHHHHHHcCcCEEEEeCChHH
Confidence 9999998875432110 0011 0111111223 4556777889999999999885
No 32
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0
Probab=98.16 E-value=2.1e-06 Score=83.25 Aligned_cols=132 Identities=17% Similarity=0.136 Sum_probs=70.7
Q ss_pred HHHHHhhhc--CCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCC--cccceeccCCCCchHHHHHHHHHHhC-CCce
Q 012773 101 KAVVKRLMT--DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGS--QLHSFCIGLEGSPDLKAAREVADYLG-TRHH 175 (456)
Q Consensus 101 ~AV~~rl~s--d~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~--~l~tfsig~~~~~e~~~A~~vA~~lg-~~h~ 175 (456)
+.++.++.. -..+.+.||||+||+++++++++....-+. -+. .+.++++.+....|...|+++|+.+| ++|+
T Consensus 35 ~~L~d~l~~~g~~~vvvglSGGiDSal~a~La~~A~daLG~---~~~~~~viav~~p~~~~~~~~dA~~~a~~lg~i~~~ 111 (285)
T 3dpi_A 35 GFVADYLRTAGLRACVLGISGGIDSSTAGRLAQLAVERLRA---SGYDARFVAMRLPYGAQHDEADARRALAFVRADETL 111 (285)
T ss_dssp HHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHHHHHHHHHH---TTCCCEEEEEECCSCC---CHHHHHHHHHHCCSEEE
T ss_pred HHHHHHHHHcCCCcEEEEccCChhHHHHHHHHHHHHHHhcc---cCcccEEEEEEcCCCCHHHHHHHHHHHHHcCCCcEE
Confidence 445555432 346889999999999998776653211000 011 34555554433346788999999999 6888
Q ss_pred EEEeChhhHHHHHHHHHHhhc-cCCc----c----cccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCc
Q 012773 176 EFHFTVQEGIDALEEVIYHIE-TYDV----T----TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 238 (456)
Q Consensus 176 ~~~~~~~~~~~~l~~~i~~~e-~~~~----~----~i~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGy~ 238 (456)
++.+++ ..+.+.+.+.... ++.. . .+.+-+-+-.+...|.+.|.-|+-||+- +|++.||.
T Consensus 112 ~i~i~~--~~~~~~~~l~~~g~~~~~~~~~~~~~~NiqaR~Rm~~L~~~A~~~g~lVlgTgn~-sE~~~Gy~ 180 (285)
T 3dpi_A 112 TVDVKP--AADAMLAALAAGGLAYLDHAQQDFVLGNIKARERMIAQYAVAGARNGVVIGTDHA-AESVMGFF 180 (285)
T ss_dssp ECCCHH--HHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCCH-HHHHHHHH
T ss_pred EEEChH--HHHHHHHHHHhcCccccccCCCchhhhhHHHHHHHHHHHHHHHHCCCEEEeCccH-HhhhCCcc
Confidence 877644 3333322221100 1100 0 0111122334556677778766666665 56666764
No 33
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=98.15 E-value=4.1e-06 Score=90.32 Aligned_cols=90 Identities=18% Similarity=0.182 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHhhhc--CCCeEEeccCcccHHHHHHHHH-------HHhchhhhhhhcC-------C----------
Q 012773 92 PLVLRKAFEKAVVKRLMT--DVPFGVLLSGGLDSSLVAAVAS-------RYLADSEAACQWG-------S---------- 145 (456)
Q Consensus 92 ~~~lr~~L~~AV~~rl~s--d~~vgv~LSGGlDSs~Iaala~-------~~~~~~~~~~~~~-------~---------- 145 (456)
.+++...+...++.+++. ...+.+.||||+|||++|++++ +..+..+...... .
T Consensus 283 ~~~~~~~~~~~l~d~~~~~g~~~vvlglSGGvDSsv~A~Lv~~~~~~a~~alG~~~v~~~~~~~~~~~~~~~~~~~~~~~ 362 (634)
T 3ilv_A 283 EFEFWEATSLGLFDYMRKSRSKGFVLSLSGGADSSACAIMVAEMIRKGLKELGLTAFLQKSNMETLFDLPALQHLPFEEQ 362 (634)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCGGGCCSSCSSCTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHhCchhhhhhhhcccccccccccccccccc
Confidence 456666666666666643 4568999999999999999843 3332210000000 0
Q ss_pred -------cccceeccCCCC--chHHHHHHHHHHhCCCceEEEeCh
Q 012773 146 -------QLHSFCIGLEGS--PDLKAAREVADYLGTRHHEFHFTV 181 (456)
Q Consensus 146 -------~l~tfsig~~~~--~e~~~A~~vA~~lg~~h~~~~~~~ 181 (456)
-++++.++...+ .+...|+++|+.||++|+++.+++
T Consensus 363 ~~~~~~~~~~~v~m~~~~ss~~~~~dA~~la~~LGi~~~~IdI~~ 407 (634)
T 3ilv_A 363 AKKITAVFLTTAYQSTRNSGDETYTSAKTLAESIGATFYNWSVDE 407 (634)
T ss_dssp HHHHHHHHEEEEEEECTTCCSHHHHHHHHHHHHHTCEEEEEECHH
T ss_pred hhHhhhheeeeeecCCCCCCHHHHHHHHHHHHHhCCcEEEEccHH
Confidence 044555554333 467889999999999999988754
No 34
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=98.14 E-value=1.2e-05 Score=84.49 Aligned_cols=125 Identities=14% Similarity=0.099 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceecc--CCCCchHHHHHHHHHHh
Q 012773 93 LVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEGSPDLKAAREVADYL 170 (456)
Q Consensus 93 ~~lr~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig--~~~~~e~~~A~~vA~~l 170 (456)
+.+.+...+.+++.+. +.++.+.+|||+||++++.++.+.. .++.++++. +....|.+.++++|+.+
T Consensus 193 ~~~~~~~i~~ir~~~~-~~kvvvalSGGvDSsvla~ll~~~g----------~~v~av~vd~g~~~~~e~~~v~~~~~~l 261 (503)
T 2ywb_A 193 EHVLEELLREVRERAG-KDRVLLAVSGGVDSSTLALLLAKAG----------VDHLAVFVDHGLLRLGEREEVEGALRAL 261 (503)
T ss_dssp HHHHHHHHHHHHHHHT-TSEEEEEECSSHHHHHHHHHHHHHT----------CEEEEEEEECSCSCTTHHHHHHHHHHHT
T ss_pred hhhhHHHHHhhhhhcc-CccEEEEecCCcchHHHHHHHHHcC----------CeEEEEEEeCCCCChHHHHHHHHHHHHh
Confidence 3344444455555554 3579999999999999999998762 467777764 33346889999999999
Q ss_pred CCCceEEEeChhhHHHHHHHHHHhhccCCccc-ccchHHHHHHHHHHHhC-CCcEEEEcCchhhh
Q 012773 171 GTRHHEFHFTVQEGIDALEEVIYHIETYDVTT-IRASTPMFLMSRKIKSL-GVKMVISGEGSDEI 233 (456)
Q Consensus 171 g~~h~~~~~~~~~~~~~l~~~i~~~e~~~~~~-i~~~~~~~~l~~~a~~~-g~~vvLsG~GgDEl 233 (456)
|++++.+.++.. +.+.+.. ...+.... +....-...+.+.|++. |++.+++|+..|.+
T Consensus 262 gi~~~vv~~~~~-f~~~l~g----~~~pe~~r~~~~~~~~~~l~~~A~~~~g~~~la~G~~~~D~ 321 (503)
T 2ywb_A 262 GVNLLVVDAKER-FLKALKG----VEDPEEKRKIIGREFVAAFSQVARERGPFRFLAQGTLYPDV 321 (503)
T ss_dssp TCCEEEEECHHH-HHHHHTT----CCCHHHHHHHHHHHHHHHHHHHHHHHCCCSEEECCCCHHHH
T ss_pred CCCEEEEECcHH-HHHhhcC----CCChHHHhhhhhHHHHHHHHHHHHhcCCCCEEEECCcCccc
Confidence 999999886532 2221110 00010000 00001112344556676 89999999976654
No 35
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=98.05 E-value=1.6e-05 Score=73.85 Aligned_cols=108 Identities=11% Similarity=0.098 Sum_probs=67.5
Q ss_pred CCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceecc--CCCCchHHHHHHHHHHhCCCceEEEeChhhHHHHH
Q 012773 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDAL 188 (456)
Q Consensus 111 ~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig--~~~~~e~~~A~~vA~~lg~~h~~~~~~~~~~~~~l 188 (456)
.++.+.+|||.||++++.++.+.. .++..+++. .....+..+++++|+.+|++++.+..+.. ..+..
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~----------~~v~~v~vd~g~~~~e~~~~v~~~~~~~gi~~~v~~~~~~-~~~~~ 113 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR----------PDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATES-AAWQE 113 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS----------TTCEEEEEECSCBCHHHHHHHHHHHHHTTCEEEEEECSSC-HHHHH
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC----------CCCeEEEeeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCCC-HHHHH
Confidence 479999999999999999998864 356666654 33224578999999999999998876532 11111
Q ss_pred HHHHHhhccCCc-ccc--cch-H-HHHHHHHHHHhCCCcEEEEcCchhh
Q 012773 189 EEVIYHIETYDV-TTI--RAS-T-PMFLMSRKIKSLGVKMVISGEGSDE 232 (456)
Q Consensus 189 ~~~i~~~e~~~~-~~i--~~~-~-~~~~l~~~a~~~g~~vvLsG~GgDE 232 (456)
.. .. ..+.. +.. ... . -...+.+.+++.|+.++++|.-.|+
T Consensus 114 ~~--~g-~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~~~i~~G~r~dd 159 (215)
T 1sur_A 114 AR--YG-KLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQ 159 (215)
T ss_dssp HH--HC-CGGGSHHHHHHHHHHHHTHHHHHHHHHHTTEEEEECCCCTTS
T ss_pred Hh--cC-CCCCCCccHHHHHHHHHHHHHHHHHHHhcCCceEEEEeehhh
Confidence 11 00 00100 000 000 0 0012345667778889999999987
No 36
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=98.04 E-value=2e-05 Score=83.78 Aligned_cols=138 Identities=22% Similarity=0.218 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHhhhc--CCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCc--hHHHHHHHH
Q 012773 92 PLVLRKAFEKAVVKRLMT--DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSP--DLKAAREVA 167 (456)
Q Consensus 92 ~~~lr~~L~~AV~~rl~s--d~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~--e~~~A~~vA 167 (456)
.+++.+.+.-.++.++.. -..+.+.||||+||+++++++++.++. .+|+++++....+. ....|+++|
T Consensus 280 ~~~~~~a~~~gl~dy~~k~g~~~~vlglSGGiDSal~~~la~~alg~--------~~v~~v~mp~~~ts~~t~~~a~~la 351 (565)
T 4f4h_A 280 EAQVYRALVLGVRDYIGKNGFPGAIIGLSGGVDSALVLAVAVDALGA--------ERVRAVMMPSRYTAGISTTDAADMA 351 (565)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEECCSSHHHHHHHHHHHHHHCG--------GGEEEEECCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcEEEecCCCccHHHHHHHHHHHhCC--------ccEEEEeccccccccchHHHHHHHH
Confidence 456777777777777763 345889999999999999999888753 46888887655544 357799999
Q ss_pred HHhCCCceEEEeChhhHHHHHHHHHHhh-cc--CCcc--cccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCccc
Q 012773 168 DYLGTRHHEFHFTVQEGIDALEEVIYHI-ET--YDVT--TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 240 (456)
Q Consensus 168 ~~lg~~h~~~~~~~~~~~~~l~~~i~~~-e~--~~~~--~i~~~~~~~~l~~~a~~~g~~vvLsG~GgDElfgGy~~~ 240 (456)
+.+|+.|+++.+++ .++.+...+.+. .. .+.+ .+.+-+-+-.++..+.+.|.-|+=||+- +|+.-||..+
T Consensus 352 ~~lg~~~~~i~i~~--~~~~~~~~~~~~~~~~~~d~~~eN~qaR~R~~~l~~~an~~g~lvlgTgn~-sE~a~Gy~T~ 426 (565)
T 4f4h_A 352 RRVGVRYDEIAIAP--MFDAFRASLAAEFAGLAEDATEENIQARIRGTLLMALSNKFGSIVLTTGNK-SEMAVGYCTL 426 (565)
T ss_dssp HHHTCEEEECCCHH--HHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCH-HHHHHTCSCT
T ss_pred HHhCCceeeeecch--HHHHHHHHhhhcccCccchhhHhhhcchhhHHHHHHHHhhcCCcccCCCch-hhHhhccccc
Confidence 99999999887643 444444333321 11 1110 1111122334555666677666667755 5677788543
No 37
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=97.92 E-value=1.2e-05 Score=82.16 Aligned_cols=107 Identities=19% Similarity=0.188 Sum_probs=69.2
Q ss_pred CCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCC--CC-chHHHHHHHHHHh-----CCCceEEEeChh
Q 012773 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--GS-PDLKAAREVADYL-----GTRHHEFHFTVQ 182 (456)
Q Consensus 111 ~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~--~~-~e~~~A~~vA~~l-----g~~h~~~~~~~~ 182 (456)
.++.+++|||+||++++.++.+.. .++.++++... ++ .+...++++|+.+ |++++.+.++..
T Consensus 188 ~kvlvalSGGvDS~vll~ll~~~G----------~~v~av~v~~~~~~~~~~~~~v~~~a~~l~~~~ggi~~~vv~~~~~ 257 (413)
T 2c5s_A 188 GKVMVLLSGGIDSPVAAYLTMKRG----------VSVEAVHFHSPPFTSERAKQKVIDLAQELTKYCKRVTLHLVPFTEV 257 (413)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHBT----------EEEEEEEEECTTTSCHHHHHHHHHHHHHHGGGSSCEEEEEEECHHH
T ss_pred CeEEEEeCCCChHHHHHHHHHHcC----------CcEEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcHH
Confidence 357899999999999999888743 46777666542 22 3667888999999 899999886542
Q ss_pred hHHHHHHHHHHhhccCCcccccchHHHH-HHHHHHHhCCCcEEEEcCchhhh
Q 012773 183 EGIDALEEVIYHIETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEI 233 (456)
Q Consensus 183 ~~~~~l~~~i~~~e~~~~~~i~~~~~~~-~l~~~a~~~g~~vvLsG~GgDEl 233 (456)
. ..+ ..... ....++.+-..+| .+.+.|++.|+..+++|+..|.+
T Consensus 258 ~--~~i---~~~~~-~~~~c~~~Rr~~~~~~~~~A~~~g~~~I~tG~~~dD~ 303 (413)
T 2c5s_A 258 Q--KTI---NKEIP-SSYSMTVMRRMMMRITERIAEERNALAITTGESLGQV 303 (413)
T ss_dssp H--HHH---HHHSC-GGGHHHHHHHHHHHHHHHHHHHTTCCEEECCCCSSST
T ss_pred H--HHH---HhcCC-cccHHHHHHHHHHHHHHHHHHHcCCCEEEEcccchhh
Confidence 1 111 11111 0111111112233 34566788899999999988765
No 38
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=97.91 E-value=1.8e-05 Score=85.87 Aligned_cols=80 Identities=21% Similarity=0.221 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccC--CCCchHHHHHHHHHHh
Q 012773 93 LVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGL--EGSPDLKAAREVADYL 170 (456)
Q Consensus 93 ~~lr~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~--~~~~e~~~A~~vA~~l 170 (456)
+.+.+.+.+.+++.+. +.++.+.||||+||+++++++.+..+. .++.++++.. ....|.+.|+++|+.+
T Consensus 224 ~~~~~~~i~~Ir~~v~-~~~vvv~lSGGvDSsVla~Ll~~alG~--------~~V~aV~vd~g~~~~~e~e~a~~~a~~l 294 (697)
T 2vxo_A 224 QNRELECIREIKERVG-TSKVLVLLSGGVDSTVCTALLNRALNQ--------EQVIAVHIDNGFMRKRESQSVEEALKKL 294 (697)
T ss_dssp HHHHHHHHHHHHHHHT-TCEEEEECCSSHHHHHHHHHHHHHSCG--------GGEEEEEEECSCCCSSTTHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhc-ccceEEEccCchHHHHHHHHHHHhcCC--------ceEEEEEeccccCCcchHHHHHHHHHHh
Confidence 4555556666666654 468999999999999999999887531 3677777643 3346889999999999
Q ss_pred CCCceEEEeCh
Q 012773 171 GTRHHEFHFTV 181 (456)
Q Consensus 171 g~~h~~~~~~~ 181 (456)
|++++.+.++.
T Consensus 295 GI~~~vvdi~~ 305 (697)
T 2vxo_A 295 GIQVKVINAAH 305 (697)
T ss_dssp TCCEEEEECHH
T ss_pred CCcEEEecchH
Confidence 99999988753
No 39
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=97.89 E-value=5.6e-05 Score=80.20 Aligned_cols=124 Identities=14% Similarity=0.171 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceecc--CCCCchHHHH-HHHHHH
Q 012773 93 LVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEGSPDLKAA-REVADY 169 (456)
Q Consensus 93 ~~lr~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig--~~~~~e~~~A-~~vA~~ 169 (456)
+.+.+...+.+++. ..+..+.+.||||+||+++++++.+..+ .++.++++. +....|...+ +.+|++
T Consensus 239 ~~~~~~~i~~ir~~-g~~~~vvvalSGGvDSsv~a~ll~~~~G---------~~v~~v~vd~g~~~~~e~~~~~~~~~~~ 308 (556)
T 3uow_A 239 IRYHELELKNIEKY-KHDHYVIAAMSGGIDSTVAAAYTHKIFK---------ERFFGIFIDNGLLRKNEAENVYTFLKST 308 (556)
T ss_dssp HHHHHHHHHHHGGG-TTTCEEEEECCSSHHHHHHHHHHHHHHG---------GGEEEEEEECSCSCTTHHHHHHHHHHHH
T ss_pred ccccccceeeeeec-CCCceEEEEcccCCCHHHHHHHHHHHhC---------CeEEEEEEecCCCChHHHHHHHHHHHHh
Confidence 44444445556655 4367899999999999999999988753 367777764 3334566666 669999
Q ss_pred h-CCCceEEEeChhhHHHHHHHHHHhhccCCcccccch---HHHHHHHHHHHhCCC----cEEEEcCchhhh
Q 012773 170 L-GTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRAS---TPMFLMSRKIKSLGV----KMVISGEGSDEI 233 (456)
Q Consensus 170 l-g~~h~~~~~~~~~~~~~l~~~i~~~e~~~~~~i~~~---~~~~~l~~~a~~~g~----~vvLsG~GgDEl 233 (456)
+ |++|+.+.++.. +.+.+.. . .+...-+.. .....+.+.|++.|. +.+.+|...|.+
T Consensus 309 l~gi~~~~vd~~~~-f~~~l~g----~--~~pe~kr~iig~~f~~vf~~~A~~~~~~~~~~~la~Gt~y~D~ 373 (556)
T 3uow_A 309 FPDMNITKIDASEN-FLSNLQG----V--TDPEQKRKIIGKLFIEEFEKAVNNIDIDINKTFLLQGTLYPDI 373 (556)
T ss_dssp CTTSEEEEEECHHH-HHHHTTT----C--CCHHHHHHHHHHHHHHHHHHHHHTTCCCGGGEEEECCCCHHHH
T ss_pred cCCCCeEEeccHHH-HHHhhcC----C--CChHHHHHHHHHHHHHHHHHHHHHcCCcccccccccCccChHH
Confidence 9 999999987532 2222110 0 000000000 112234556666664 788888776655
No 40
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=97.84 E-value=5.8e-05 Score=77.66 Aligned_cols=112 Identities=13% Similarity=0.181 Sum_probs=69.8
Q ss_pred HHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceecc--CCC-C-chHHHHHHHHHHhCCCceEEE
Q 012773 103 VVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEG-S-PDLKAAREVADYLGTRHHEFH 178 (456)
Q Consensus 103 V~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig--~~~-~-~e~~~A~~vA~~lg~~h~~~~ 178 (456)
+.+.+....++.|++|||+||++++.++.+...+. .+.++.++++. ... + .|..+++++|+.+|++++.+.
T Consensus 6 l~~~l~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~-----~g~~v~avhvdhglr~~s~~~~~~v~~~~~~lgi~~~v~~ 80 (433)
T 1ni5_A 6 LNRQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN-----PGVALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVER 80 (433)
T ss_dssp HHHHHTTCSEEEEECCSBHHHHHHHHHHHHHHTTS-----TTCEEEEEEECCSCCSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHhcCCCCEEEEEEcchHHHHHHHHHHHHHHHhc-----CCCeEEEEEEECCCCcccHHHHHHHHHHHHHcCCcEEEEE
Confidence 33444556789999999999999999998754310 02356666664 332 2 367899999999999999887
Q ss_pred eChhhHHHHHHHHHHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCchhhh
Q 012773 179 FTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 233 (456)
Q Consensus 179 ~~~~~~~~~l~~~i~~~e~~~~~~i~~~~~~~~l~~~a~~~g~~vvLsG~GgDEl 233 (456)
++.... ..+. ...+-...|.+...+.+ ++.++++|+-+|..
T Consensus 81 ~~~~~~------------~~~~-e~~aR~~Ry~~l~~~a~-~~~~i~tgH~~dD~ 121 (433)
T 1ni5_A 81 VQLAQE------------GLGI-EAQARQARYQAFARTLL-PGEVLVTAQHLDDQ 121 (433)
T ss_dssp CCCCCS------------SSTT-TTHHHHHHHHHHHHTCC-TTEEEECCCCHHHH
T ss_pred ecCCCC------------CCCH-HHHHHHHHHHHHHHHHh-hCCeEEeeccchHH
Confidence 764310 0000 00011223433332322 48899999988753
No 41
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=97.65 E-value=0.00015 Score=69.02 Aligned_cols=108 Identities=12% Similarity=0.088 Sum_probs=66.2
Q ss_pred CCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccC--CCCchHHHHHHHHHHhCCCceEEEeChhhHHHHH
Q 012773 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGL--EGSPDLKAAREVADYLGTRHHEFHFTVQEGIDAL 188 (456)
Q Consensus 111 ~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~--~~~~e~~~A~~vA~~lg~~h~~~~~~~~~~~~~l 188 (456)
.++.+.+|||.||++++.++.+.. .++..+++.. ....+..+++++++.+|++++.+..+.. ....
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~~----------~~v~vv~idtg~~~~et~~~~~~~~~~~gi~~~v~~~~~~--~~~~ 113 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQIR----------PDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATES--AAWQ 113 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHHS----------TTCEEEECCCSCBCHHHHHHHHHHHHHTTCEEEECCCSSC--HHHH
T ss_pred CCEEEEeCCCHHHHHHHHHHHHhC----------CCCeEEEecCCCCCHHHHHHHHHHHHHhCCceEEEcCCCC--HHHH
Confidence 479999999999999999998865 3566666543 2224578999999999999887765421 1111
Q ss_pred HHHHHhhccCCc-cccc--ch-HH-HHHHHHHHHhCCCcEEEEcCchhh
Q 012773 189 EEVIYHIETYDV-TTIR--AS-TP-MFLMSRKIKSLGVKMVISGEGSDE 232 (456)
Q Consensus 189 ~~~i~~~e~~~~-~~i~--~~-~~-~~~l~~~a~~~g~~vvLsG~GgDE 232 (456)
... +. ..+.. +..+ +. +. ...+.+.+++.|+.+++||.-.|+
T Consensus 114 ~~~-~g-~~~~~~~~~~~~cc~~~K~~pl~~~l~~~~~~~~~tG~r~dd 160 (252)
T 2o8v_A 114 EAR-YG-KLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQ 160 (252)
T ss_dssp HHH-TC-CGGGSHHHHHHHHHHHHTHHHHHHHHHHTTCSEEEECCCSTT
T ss_pred HHH-cC-CccccCCchHHHHHHHHHHHHHHHHHHhcCCcEEEEeccccc
Confidence 100 00 00100 0000 00 00 012345567778889999999987
No 42
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=97.62 E-value=0.00019 Score=70.99 Aligned_cols=110 Identities=11% Similarity=0.074 Sum_probs=66.9
Q ss_pred CCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceecc--CCCCchHHHHHHHHHHhCCCceEEEeChhhHHHHH
Q 012773 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDAL 188 (456)
Q Consensus 111 ~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig--~~~~~e~~~A~~vA~~lg~~h~~~~~~~~~~~~~l 188 (456)
.++.+.+|||.||++++.++.+..... +.++..+++. .....+..+++++++.+|++++.+..... ..
T Consensus 47 ~~ivVa~SGGkDS~vLL~Ll~~~~~~~------~~~i~vv~vDtg~~~~et~~~v~~~~~~~gi~l~v~~~~~~--~~-- 116 (325)
T 1zun_A 47 DNPVMLYSIGKDSAVMLHLARKAFFPG------KLPFPVMHVDTRWKFQEMYRFRDQMVEEMGLDLITHINPDG--VA-- 116 (325)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHTTS------CCSSCEEEECCSCCCHHHHHHHHHHHHTTTCCEEEECC---------
T ss_pred CCEEEEEcChHHHHHHHHHHHHhcccc------CCCEEEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCchH--Hh--
Confidence 478999999999999999998875321 1356666664 33234678999999999999887764321 10
Q ss_pred HHHHHhhccCCc-ccccchH-HHHHHHHHHHhCCCcEEEEcCchhhhc
Q 012773 189 EEVIYHIETYDV-TTIRAST-PMFLMSRKIKSLGVKMVISGEGSDEIF 234 (456)
Q Consensus 189 ~~~i~~~e~~~~-~~i~~~~-~~~~l~~~a~~~g~~vvLsG~GgDElf 234 (456)
. ....+.. +...+.. -...+.+.+++.|.+++++|.-.||.-
T Consensus 117 -~---G~~~~~~~~~~cc~~~K~~pL~~~l~e~g~~~i~tG~R~Des~ 160 (325)
T 1zun_A 117 -Q---GINPFTHGSAKHTDIMKTEGLKQALDKHGFDAAFGGARRDEEK 160 (325)
T ss_dssp -------------CCHHHHHHTHHHHHHHHHHHTCSEEECCCCTTSSG
T ss_pred -c---CCCccccChHHHHHHHHHHHHHHHHHHcCCCEEEEecccchhh
Confidence 0 0000100 0000000 011345566677899999999988854
No 43
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.0003 Score=67.36 Aligned_cols=115 Identities=12% Similarity=0.014 Sum_probs=68.0
Q ss_pred CCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceecc--CCCCchHHHHHHHHHHhCC----CceEEEeChhhH
Q 012773 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEGSPDLKAAREVADYLGT----RHHEFHFTVQEG 184 (456)
Q Consensus 111 ~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig--~~~~~e~~~A~~vA~~lg~----~h~~~~~~~~~~ 184 (456)
.++.+.+|||.||++++.++.+...+ +.++..+++. +....+..+++++++.+|+ +++.+..+...-
T Consensus 42 ~~v~va~SGGkDS~vLL~ll~~~~~~-------~~~i~vv~iDtg~~~~et~~~v~~~~~~~gl~~~~~l~v~~~~~~~~ 114 (261)
T 2oq2_A 42 PHLFQTTAFGLTGLVTIDMLSKLSEK-------YYMPELLFIDTLHHFPQTLTLKNEIEKKYYQPKNQTIHVYKPDGCES 114 (261)
T ss_dssp SSEEEECCCCHHHHHHHHHHHHHTTT-------SCCCEEEEECCSCBCHHHHHHHHHHHHHHTGGGTCCCEEECSTTCSS
T ss_pred CCEEEEecCCHHHHHHHHHHHHhCcc-------CCCeeEEEecCCCCCHHHHHHHHHHHHHhCCCCCCCeEEEecCCccC
Confidence 37999999999999999999887631 0245666653 3323467899999999999 888776542100
Q ss_pred HHHHHHHHHhhccCCcccccch-H-HHHHHHHHHHhCCCcEEEEcCchhhh
Q 012773 185 IDALEEVIYHIETYDVTTIRAS-T-PMFLMSRKIKSLGVKMVISGEGSDEI 233 (456)
Q Consensus 185 ~~~l~~~i~~~e~~~~~~i~~~-~-~~~~l~~~a~~~g~~vvLsG~GgDEl 233 (456)
.+.+.+. +....+.....++. + -...+.+.+++.|++++++|.-.|+-
T Consensus 115 ~~~~~~~-~G~~~~~~~~~~cc~~~K~~pl~~~l~~~g~~~~~tG~R~dds 164 (261)
T 2oq2_A 115 EADFASK-YGDFLWEKDDDKYDYLAKVEPAHRAYKELHISAVFTGRRKSQG 164 (261)
T ss_dssp HHHHHHH-HCTTHHHHCHHHHHHHHTHHHHHHHHHHTTCSEEECCCCGGGC
T ss_pred HHHHHHH-hCCCccccChHHHHHHHhHHHHHHHHHHcCCCEEEEeccccch
Confidence 1111110 00000000000000 0 01123456677899999999999984
No 44
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=97.47 E-value=0.0001 Score=69.37 Aligned_cols=60 Identities=18% Similarity=0.071 Sum_probs=42.9
Q ss_pred CeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCccccee--ccCC------CCchHHHHHHHHHHhCCCceEEEeCh
Q 012773 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFC--IGLE------GSPDLKAAREVADYLGTRHHEFHFTV 181 (456)
Q Consensus 112 ~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfs--ig~~------~~~e~~~A~~vA~~lg~~h~~~~~~~ 181 (456)
++.+++|||.||++.+.++.+.. ..+.+.. ++.. ...+...|+++|+.+|++|+.+.+..
T Consensus 6 Kvvvl~SGGkDSs~al~~l~~~G----------~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGIpl~~v~~~g 73 (237)
T 3rjz_A 6 DVAVLYSGGKDSNYALYWAIKNR----------FSVKFLVTMVSENEESYMYHTINANLTDLQARALGIPLVKGFTQG 73 (237)
T ss_dssp EEEEECCSSHHHHHHHHHHHHTT----------CEEEEEEEEECC--------CCSSSHHHHHHHHHTCCEEEEEC--
T ss_pred EEEEEecCcHHHHHHHHHHHHcC----------CeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 68999999999999888887653 3444432 2221 12456789999999999999998764
No 45
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Probab=97.32 E-value=0.00022 Score=81.92 Aligned_cols=66 Identities=21% Similarity=0.270 Sum_probs=54.9
Q ss_pred CcceeEEEEEEECCCCEEEEEeccCCCccEEEEEecCCeEEEecccchhhhccCc-cE--EeCCCcEEEec
Q 012773 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCER-FI--SFPPGHIYSSK 68 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~~~~-I~--~lpPG~~~~~~ 68 (456)
.++|.|++++-|. +.++++|||.|.|||.|+..+++.+++|||..+|--.... ++ .|.||..+.++
T Consensus 326 ~~dGp~slv~~dg--~~l~a~~DrnGlRPl~~g~t~d~~~v~ASE~galdi~~a~~vrkg~l~PGemv~id 394 (1479)
T 1ea0_A 326 PWDGPAALAMTDG--RWVVGGMDRNGLRPMRYTITTDGLIIGGSETGMVKIDETQVIEKGRLGPGEMIAVD 394 (1479)
T ss_dssp CCCSSEEEEECSS--SEEEEECCTTCCSCCEEEEETTSEEEECSSSTTSCCCGGGEEEEEECCTTCEEEEE
T ss_pred cCCCcEEEEEEeC--CEEEEEecCCCCcceEEEEECCCEEEEEcccccccCcchheeeccCCCCCeEEEEE
Confidence 3689999999775 7999999999999999998767789999999888543333 34 89999998775
No 46
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=97.31 E-value=0.0003 Score=68.96 Aligned_cols=80 Identities=20% Similarity=0.206 Sum_probs=57.1
Q ss_pred CCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCchHHHHHHHHHHh-------CCCceEEE-eChh
Q 012773 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYL-------GTRHHEFH-FTVQ 182 (456)
Q Consensus 111 ~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~e~~~A~~vA~~l-------g~~h~~~~-~~~~ 182 (456)
.++.++||| +||++.+.++.+.. ..+.+.++. .+..+...|+++|+.+ +++++.+. ++.
T Consensus 180 ~kvlvllSG-vDS~vaa~ll~~~G----------~~v~~v~~~-~~~~~~~~a~~~a~~l~~~~~~~~i~~~vv~~~~~- 246 (307)
T 1vbk_A 180 GRMIGILHD-ELSALAIFLMMKRG----------VEVIPVYIG-KDDKNLEKVRSLWNLLKRYSYGSKGFLVVAESFDR- 246 (307)
T ss_dssp CEEEEECSS-HHHHHHHHHHHHBT----------CEEEEEEES-CSSHHHHHHHHHHHHHHTTCTTSCCCCEEESSHHH-
T ss_pred CcEEEEEeC-CcHHHHHHHHHhCC----------CeEEEEEEE-ECHHHHHHHHHHHHHHhhhccCCCCcEEEeCCCHH-
Confidence 457899999 99999988887754 467777766 2234677899999999 66665553 211
Q ss_pred hHHHHHHHHHHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCchhh
Q 012773 183 EGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 232 (456)
Q Consensus 183 ~~~~~l~~~i~~~e~~~~~~i~~~~~~~~l~~~a~~~g~~vvLsG~GgDE 232 (456)
.+ +.|.+.|+..+.||+-++.
T Consensus 247 --------------------------~~---~~A~~~ga~~I~tG~~~~~ 267 (307)
T 1vbk_A 247 --------------------------VL---KLIRDFGVKGVIKGLRPND 267 (307)
T ss_dssp --------------------------HH---HHHHHHTCCEEECCCCGGG
T ss_pred --------------------------HH---HHHHHcCCCEEEECcccch
Confidence 00 4466679999999998654
No 47
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=97.27 E-value=0.00035 Score=80.46 Aligned_cols=66 Identities=23% Similarity=0.171 Sum_probs=54.8
Q ss_pred CcceeEEEEEEECCCCEEEEEeccCCCccEEEEEecCCeEEEecccchhhhccC-ccE--EeCCCcEEEec
Q 012773 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCE-RFI--SFPPGHIYSSK 68 (456)
Q Consensus 1 ~L~G~Fa~~i~D~~~~~l~laRD~~G~~PLyy~~~~~~~~~faSeik~L~~~~~-~I~--~lpPG~~~~~~ 68 (456)
.++|.|++++-|. +.++++|||.|.|||.|+..+++.+++|||..+|--... -++ .|.||..+.++
T Consensus 325 ~~dGpaalv~~dg--~~l~a~~DrnGlRPl~~~~t~d~~~v~ASE~galdi~~a~~vrkg~l~PGemv~id 393 (1520)
T 1ofd_A 325 PWDGPALLVFSDG--KIVGAGLDRNGLRPARYCITKDDYIVLGSEAGVVDLPEVDIVEKGRLAPGQMIAVD 393 (1520)
T ss_dssp CCCSSEEEEEECS--SEEEEEECTTCCSCCEEEEETTCCEEEESSTTCSCCCGGGEEEEEECCTTCEEEEE
T ss_pred cCCCCEEEEEEeC--CEEEEEecCCCCCceEEEEeCCCEEEEEcccccccCcchheeeccCCCCCeEEEEE
Confidence 3689999999886 799999999999999998876678999999988843333 234 89999998775
No 48
>1te5_A Conserved hypothetical protein; glutamine amidotransferase, amidotransferase, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.153.1.1
Probab=96.88 E-value=0.00082 Score=64.12 Aligned_cols=65 Identities=20% Similarity=0.128 Sum_probs=50.9
Q ss_pred eeEEEEEEECCCCEEEEEec----------cCCCccEEE-------EE---ecCCeEEEecccchhhhccCccEEeCCCc
Q 012773 4 GMFSFVLLDTRDKSFIAARD----------AIGVTPLYM-------GW---GLDGSIWFASEMKALSDDCERFISFPPGH 63 (456)
Q Consensus 4 G~Fa~~i~D~~~~~l~laRD----------~~G~~PLyy-------~~---~~~~~~~faSeik~L~~~~~~I~~lpPG~ 63 (456)
|.|+|++.|. .+|+++|| |+|++||.. .. ..++.++||||- |- ..+.++.++||+
T Consensus 168 G~~n~~l~~g--~~l~a~rd~~L~~~~~~~p~g~rpL~~~~~~i~~g~~~~~~~~~~vvASE~--l~-~~~~wr~v~pGe 242 (257)
T 1te5_A 168 GVFNALISDG--DWLFTFCSSKLAYITRRAPFGPARLKDADLTVDFHAETTPDDVVTVIATEP--LT-DNENWTLQQSGE 242 (257)
T ss_dssp BCCEEEEESS--SCEEEECSSCEEEEEEESSCCCEEEECSSEEEEECCCSSTTCEEEEEESSC--SS-SSSSCEEECTTC
T ss_pred CcEEEEEEcC--CEEEEEEcCCceEEeecCCCcccccccccceeecccccCCCCCEEEEEeCc--cC-CCCCeeEeCCCE
Confidence 8999999886 67999999 999999964 20 113468999993 43 457899999999
Q ss_pred EEEecCCeEE
Q 012773 64 IYSSKQGGLR 73 (456)
Q Consensus 64 ~~~~~~~~~~ 73 (456)
.+.++.+.+.
T Consensus 243 ~v~i~~~~~~ 252 (257)
T 1te5_A 243 WVLWWGGEVL 252 (257)
T ss_dssp EEEEETTEEE
T ss_pred EEEEECCEEE
Confidence 9998876654
No 49
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.0087 Score=58.47 Aligned_cols=69 Identities=14% Similarity=0.025 Sum_probs=45.6
Q ss_pred CCeEEeccCcccHHHHHHHHHHHhchhh----hhhh-------c-CCcccceeccCCC-C-chHHHHHHHHHHhCCCceE
Q 012773 111 VPFGVLLSGGLDSSLVAAVASRYLADSE----AACQ-------W-GSQLHSFCIGLEG-S-PDLKAAREVADYLGTRHHE 176 (456)
Q Consensus 111 ~~vgv~LSGGlDSs~Iaala~~~~~~~~----~~~~-------~-~~~l~tfsig~~~-~-~e~~~A~~vA~~lg~~h~~ 176 (456)
.++.+.+|||.||++++.++.+.+.+.. ..++ . ..++..+++.... . ....+++++++.+|++++.
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~fpet~~fv~~~~~~ygl~l~v 133 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEETFPTLENFVLETSERYCLSLYE 133 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTCCHHHHHHHHHHHHHTTEEEEE
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 4699999999999999999887642110 0000 0 1345666664321 2 3578999999999998866
Q ss_pred EEe
Q 012773 177 FHF 179 (456)
Q Consensus 177 ~~~ 179 (456)
+..
T Consensus 134 ~~~ 136 (306)
T 2wsi_A 134 SQR 136 (306)
T ss_dssp CCC
T ss_pred EeC
Confidence 543
No 50
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=95.99 E-value=0.025 Score=54.29 Aligned_cols=59 Identities=10% Similarity=0.118 Sum_probs=46.2
Q ss_pred CCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceecc--CCCCchHHHHHHHHHHhCCCceEEEeC
Q 012773 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEGSPDLKAAREVADYLGTRHHEFHFT 180 (456)
Q Consensus 111 ~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig--~~~~~e~~~A~~vA~~lg~~h~~~~~~ 180 (456)
.++.+.+| |.||++++.++.+.. .++..+++. +....+..+++++++.+|++++.+...
T Consensus 55 ~~i~Va~S-GkDS~vLL~Ll~~~~----------~~i~vv~iDtg~~~~et~~~v~~~~~~~gi~l~v~~~~ 115 (275)
T 2goy_A 55 DELWISFS-GAEDVVLVDMAWKLN----------RNVKVFSLDTGRLHPETYRFIDQVREHYGIAIDVLSPD 115 (275)
T ss_dssp TTEEEECC-SSTTHHHHHHHHHHC----------TTCCEEEECCSCCCHHHHHHHHHHHHHHTCCCEEECCC
T ss_pred CCEEEEee-cHHHHHHHHHHHHhC----------CCceEEEEeCCCCCHHHHHHHHHHHHHHCCeEEEEeCC
Confidence 57999999 999999999998764 356666664 332245789999999999998877654
No 51
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=92.79 E-value=0.21 Score=48.50 Aligned_cols=66 Identities=12% Similarity=0.066 Sum_probs=40.4
Q ss_pred CeEEeccCcccHHHHHHHHHHHhchh-----hhhh------hc-CCcccceeccCCC-Cch-HHHHHHHHHHhCCCceEE
Q 012773 112 PFGVLLSGGLDSSLVAAVASRYLADS-----EAAC------QW-GSQLHSFCIGLEG-SPD-LKAAREVADYLGTRHHEF 177 (456)
Q Consensus 112 ~vgv~LSGGlDSs~Iaala~~~~~~~-----~~~~------~~-~~~l~tfsig~~~-~~e-~~~A~~vA~~lg~~h~~~ 177 (456)
.+++..|||.||++++-++.+.+.+. ..+. .. ..++..+.+...- -+| ..+..++++++|++.+++
T Consensus 60 ~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG~~FpET~ef~d~~~~~ygL~L~v~ 139 (308)
T 3fwk_A 60 EISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDTFKTLENFIEETSLRYSLSLYES 139 (308)
T ss_dssp SEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCTTCCHHHHHHHHHHHHHTTEEEEEC
T ss_pred CEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCCCCCHHHHHHHHHHHHHhCCcEEEe
Confidence 59999999999999999988764110 0000 00 0245566554321 244 588999999999865443
No 52
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=33.55 E-value=2.9e+02 Score=25.72 Aligned_cols=129 Identities=8% Similarity=-0.001 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHh-chhhhhh---hcCCcccceeccCCCCchHHHHHHHHH
Q 012773 93 LVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYL-ADSEAAC---QWGSQLHSFCIGLEGSPDLKAAREVAD 168 (456)
Q Consensus 93 ~~lr~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~-~~~~~~~---~~~~~l~tfsig~~~~~e~~~A~~vA~ 168 (456)
.++.+.+++.+.+.+..+..-.++.+||..+..++..+.... .+..... .-+..|.+..-.+. . ....++
T Consensus 68 ~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~---~---~~~~~~ 141 (397)
T 3f9t_A 68 KLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHF---S---FEKGRE 141 (397)
T ss_dssp HHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCT---H---HHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchh---H---HHHHHH
Confidence 566777777777777655445578888887765544333211 0000000 00112222221221 1 344566
Q ss_pred HhCCCceEEEeChhh--HHHHHHHHHHh-------hccCCcccccchHHHHHHHHHHHhCCCcEEEEcC
Q 012773 169 YLGTRHHEFHFTVQE--GIDALEEVIYH-------IETYDVTTIRASTPMFLMSRKIKSLGVKMVISGE 228 (456)
Q Consensus 169 ~lg~~h~~~~~~~~~--~~~~l~~~i~~-------~e~~~~~~i~~~~~~~~l~~~a~~~g~~vvLsG~ 228 (456)
.+|.+...+.++.+. -++.+.+.+.. ++.+..++.. ..+.-.+.+.+++.|+-+++.+-
T Consensus 142 ~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~-~~~l~~i~~l~~~~~~~li~Dea 209 (397)
T 3f9t_A 142 MMDLEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGT-IDNIEELSKIAKENNIYIHVDAA 209 (397)
T ss_dssp HHTCEEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCC-BCCHHHHHHHHHHHTCEEEEECT
T ss_pred HcCceeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCCCC-CCCHHHHHHHHHHhCCeEEEEcc
Confidence 679877777654321 12344444332 1223222211 12344567778888888887553
No 53
>1hle_B Horse leukocyte elastase inhibitor; hydrolase inhibitor(serine proteinase); 1.95A {Equus caballus} SCOP: e.1.1.1
Probab=21.76 E-value=1.1e+02 Score=18.28 Aligned_cols=19 Identities=16% Similarity=0.301 Sum_probs=13.1
Q ss_pred ceeEEEEEEECCCCE-EEEE
Q 012773 3 DGMFSFVLLDTRDKS-FIAA 21 (456)
Q Consensus 3 ~G~Fa~~i~D~~~~~-l~la 21 (456)
|=-|.|+|+|..++. |+++
T Consensus 7 drPFlf~I~~~~t~~iLF~G 26 (31)
T 1hle_B 7 DHPFIFFIRHNPSANILFLG 26 (31)
T ss_dssp CSCEEEEEEETTTTEEEEEE
T ss_pred eCCEEEEEEECCCCcEEEEE
Confidence 456888899887765 4444
No 54
>2h4p_B MENT, heterochromatin-associated protein MENT; serine protease inhibitor, serpin, hydrolase inhibitor; 1.70A {Gallus gallus} PDB: 2h4q_B
Probab=21.11 E-value=1.1e+02 Score=18.70 Aligned_cols=19 Identities=21% Similarity=0.446 Sum_probs=12.6
Q ss_pred ceeEEEEEEECCCCE-EEEE
Q 012773 3 DGMFSFVLLDTRDKS-FIAA 21 (456)
Q Consensus 3 ~G~Fa~~i~D~~~~~-l~la 21 (456)
|=-|.|+|+|..++. |+++
T Consensus 8 drPFlf~I~~~~t~~iLF~G 27 (34)
T 2h4p_B 8 DHPFHFFIRHNKSKTILFFG 27 (34)
T ss_dssp CSCEEEEEEETTTTEEEEEE
T ss_pred cCCEEEEEEECCCCeEEEEE
Confidence 446888888877664 3443
No 55
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=20.64 E-value=2.4e+02 Score=27.84 Aligned_cols=117 Identities=12% Similarity=0.129 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhhhcCCCeEEeccCcccHHHHHHHHHHHhchhhhhhhcCCcccceeccCCCCchHHHHHHHHHHhCCCc
Q 012773 95 LRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRH 174 (456)
Q Consensus 95 lr~~L~~AV~~rl~sd~~vgv~LSGGlDSs~Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~e~~~A~~vA~~lg~~h 174 (456)
..+.|++.+.+.... +-++.+++|. +.+.+++. ...+. +..|.+....+. .-......+++.+|.+.
T Consensus 83 ~~~~le~~lA~l~g~--~~~v~~~sG~-~Ai~~al~-al~~~-------Gd~Vi~~~~~y~--~~~~~~~~~~~~~G~~~ 149 (430)
T 3ri6_A 83 TVEDLEQRLKNLTGA--LGVLALGSGM-AAISTAIL-TLARA-------GDSVVTTDRLFG--HTLSLFQKTLPSFGIEV 149 (430)
T ss_dssp HHHHHHHHHHHHHTC--SEEEEESCHH-HHHHHHHH-HHCCT-------TCEEEEETTCCH--HHHHHHHTHHHHTTCEE
T ss_pred HHHHHHHHHHHHHCC--CcEEEECCHH-HHHHHHHH-HHhCC-------CCEEEEcCCCch--hHHHHHHHHHHHcCCEE
Confidence 455666666665543 3478889997 33333332 23321 123322221111 11233444677889876
Q ss_pred eEEEeChhhHHHHHHHHHH------hhccCCcccccchHHHHHHHHHHHhCCCcEEEEcC
Q 012773 175 HEFHFTVQEGIDALEEVIY------HIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGE 228 (456)
Q Consensus 175 ~~~~~~~~~~~~~l~~~i~------~~e~~~~~~i~~~~~~~~l~~~a~~~g~~vvLsG~ 228 (456)
..+..+ + ++.+.+.+. .+|++..++... .+.-.+.+.+++.|+.+++..-
T Consensus 150 ~~v~~~--d-~~~l~~ai~~~t~~v~~e~p~NptG~~-~dl~~i~~la~~~g~~livD~a 205 (430)
T 3ri6_A 150 RFVDVM--D-SLAVEHACDETTKLLFLETISNPQLQV-ADLEALSKVVHAKGIPLVVDTT 205 (430)
T ss_dssp EEECTT--C-HHHHHHHCCTTEEEEEEESSCTTTCCC-CCHHHHHHHHHTTTCCEEEECT
T ss_pred EEeCCC--C-HHHHHHhhCCCCeEEEEECCCCCCCee-cCHHHHHHHHHHcCCEEEEECC
Confidence 666543 2 233443321 145554443221 1334577888889998887644
Done!