Query 012774
Match_columns 456
No_of_seqs 204 out of 2553
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 15:58:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012774.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012774hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni2_A 4-coumarate:COA ligase; 100.0 1.1E-72 3.8E-77 568.3 42.5 428 19-456 6-449 (536)
2 3rix_A Luciferase, luciferin 4 100.0 1.2E-71 4.2E-76 562.4 40.5 427 19-456 5-454 (550)
3 2d1s_A Luciferase, luciferin 4 100.0 4.2E-70 1.4E-74 550.4 41.6 423 20-456 10-456 (548)
4 3g7s_A Long-chain-fatty-acid-- 100.0 2.5E-70 8.4E-75 552.8 35.2 421 23-456 8-454 (549)
5 4fuq_A Malonyl COA synthetase; 100.0 1.9E-69 6.5E-74 540.3 35.2 404 42-456 4-414 (503)
6 3tsy_A Fusion protein 4-coumar 100.0 5.4E-69 1.9E-73 577.1 41.0 437 12-456 38-496 (979)
7 1mdb_A 2,3-dihydroxybenzoate-A 100.0 7.2E-70 2.5E-74 547.9 31.6 406 38-456 25-445 (539)
8 3r44_A Fatty acyl COA syntheta 100.0 9.4E-70 3.2E-74 544.3 32.3 407 37-456 15-428 (517)
9 3o83_A Peptide arylation enzym 100.0 1.6E-69 5.5E-74 546.0 32.5 407 38-456 30-454 (544)
10 4dg8_A PA1221; ANL superfamily 100.0 3.7E-69 1.3E-73 549.1 32.8 397 37-456 26-434 (620)
11 3fce_A D-alanine--poly(phospho 100.0 5.5E-69 1.9E-73 538.8 33.3 405 38-456 1-414 (512)
12 1v25_A Long-chain-fatty-acid-C 100.0 9.2E-69 3.2E-73 540.1 35.0 405 38-456 18-450 (541)
13 4gr5_A Non-ribosomal peptide s 100.0 2.9E-68 9.8E-73 539.8 35.3 399 37-456 74-484 (570)
14 3etc_A AMP-binding protein; ad 100.0 1.4E-67 4.8E-72 534.5 39.6 407 38-456 55-490 (580)
15 1t5h_X 4-chlorobenzoyl COA lig 100.0 6.1E-68 2.1E-72 530.0 35.6 400 38-456 2-417 (504)
16 3ivr_A Putative long-chain-fat 100.0 9.8E-68 3.4E-72 529.4 35.3 401 37-456 5-415 (509)
17 3e7w_A D-alanine--poly(phospho 100.0 1.1E-67 3.9E-72 528.9 35.1 404 38-456 1-413 (511)
18 2v7b_A Benzoate-coenzyme A lig 100.0 3.4E-67 1.2E-71 527.9 38.3 403 38-456 23-444 (529)
19 1pg4_A Acetyl-COA synthetase; 100.0 2.1E-67 7.3E-72 540.4 35.7 410 38-456 75-532 (652)
20 1amu_A GRSA, gramicidin synthe 100.0 3E-67 1E-71 530.6 35.7 395 38-456 39-445 (563)
21 3rg2_A Enterobactin synthase c 100.0 1.6E-67 5.4E-72 539.0 32.4 404 38-456 27-449 (617)
22 3l8c_A D-alanine--poly(phospho 100.0 1.4E-67 4.9E-72 529.9 31.4 405 38-456 4-418 (521)
23 3c5e_A Acyl-coenzyme A synthet 100.0 1.7E-66 5.8E-71 525.9 39.0 403 38-456 37-471 (570)
24 1ry2_A Acetyl-coenzyme A synth 100.0 1.6E-66 5.6E-71 534.0 34.4 414 35-456 78-541 (663)
25 3ipl_A 2-succinylbenzoate--COA 100.0 3.8E-66 1.3E-70 517.1 29.6 395 38-456 1-413 (501)
26 3kxw_A Saframycin MX1 syntheta 100.0 2.3E-66 8E-71 529.2 25.8 405 38-456 11-473 (590)
27 3ite_A SIDN siderophore synthe 100.0 5E-65 1.7E-69 516.0 32.6 405 37-456 19-442 (562)
28 3nyq_A Malonyl-COA ligase; A/B 100.0 1E-65 3.5E-70 513.3 23.7 391 38-456 22-421 (505)
29 2vsq_A Surfactin synthetase su 100.0 2.7E-64 9.1E-69 553.7 35.0 400 38-456 464-876 (1304)
30 3gqw_A Fatty acid AMP ligase; 100.0 4.3E-64 1.5E-68 511.4 31.3 406 38-456 21-476 (576)
31 3t5a_A Long-chain-fatty-acid-- 100.0 4.4E-64 1.5E-68 500.0 27.3 385 38-439 24-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 5.9E-42 2E-46 325.9 14.4 230 191-456 36-265 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 3.6E-41 1.2E-45 330.4 16.8 249 189-456 82-346 (436)
34 2y27_A Phenylacetate-coenzyme 100.0 1.9E-40 6.6E-45 325.3 16.8 249 189-456 87-348 (437)
35 2y4o_A Phenylacetate-coenzyme 100.0 2.5E-40 8.6E-45 325.1 16.4 249 189-456 89-350 (443)
36 3hgu_A EHPF; phenazine, antibi 100.0 1.2E-33 4.3E-38 270.7 15.4 238 189-449 88-368 (369)
37 4eql_A 4-substituted benzoates 98.9 2.6E-09 8.9E-14 105.2 7.6 126 306-455 296-439 (581)
38 4b2g_A GH3-1 auxin conjugating 98.8 4.6E-09 1.6E-13 103.6 5.0 126 306-455 301-451 (609)
39 4epl_A Jasmonic acid-amido syn 98.7 2.3E-08 7.9E-13 98.2 6.5 127 306-455 301-446 (581)
40 2y27_A Phenylacetate-coenzyme 93.8 0.36 1.2E-05 46.2 10.7 99 56-156 89-196 (437)
41 2y4o_A Phenylacetate-coenzyme 93.2 0.43 1.5E-05 45.7 10.3 86 69-156 111-198 (443)
42 3qov_A Phenylacetate-coenzyme 93.1 0.35 1.2E-05 46.2 9.4 98 57-156 86-192 (436)
43 3hgu_A EHPF; phenazine, antibi 86.1 2.4 8.3E-05 39.2 8.5 99 56-157 90-220 (369)
44 2d1s_A Luciferase, luciferin 4 84.9 4.6 0.00016 39.7 10.3 98 57-157 192-298 (548)
45 3ipl_A 2-succinylbenzoate--COA 81.5 14 0.0005 35.5 12.3 97 56-157 162-266 (501)
46 3o83_A Peptide arylation enzym 80.5 15 0.00051 35.9 12.1 96 56-156 190-295 (544)
47 1mdb_A 2,3-dihydroxybenzoate-A 79.9 13 0.00045 36.3 11.4 96 56-156 181-286 (539)
48 3r44_A Fatty acyl COA syntheta 78.7 16 0.00055 35.4 11.6 96 56-157 169-273 (517)
49 3rix_A Luciferase, luciferin 4 77.4 10 0.00035 37.2 9.8 100 56-157 189-296 (550)
50 3e7w_A D-alanine--poly(phospho 75.0 11 0.00038 36.5 9.2 98 56-157 142-249 (511)
51 1v25_A Long-chain-fatty-acid-C 74.7 12 0.00043 36.5 9.5 99 56-156 175-281 (541)
52 3fce_A D-alanine--poly(phospho 73.7 10 0.00036 36.7 8.6 98 56-157 143-250 (512)
53 3c5e_A Acyl-coenzyme A synthet 72.5 20 0.00069 35.2 10.5 98 56-157 205-312 (570)
54 3ni2_A 4-coumarate:COA ligase; 71.4 9.5 0.00033 37.3 7.7 101 56-157 177-286 (536)
55 1t5h_X 4-chlorobenzoyl COA lig 70.2 20 0.00069 34.5 9.8 96 56-156 152-258 (504)
56 2v7b_A Benzoate-coenzyme A lig 69.5 25 0.00085 34.1 10.3 98 56-157 182-289 (529)
57 3rg2_A Enterobactin synthase c 69.3 39 0.0013 33.5 11.9 96 56-156 183-288 (617)
58 3kxw_A Saframycin MX1 syntheta 68.6 15 0.0005 36.4 8.5 97 56-156 166-274 (590)
59 4gr5_A Non-ribosomal peptide s 65.3 27 0.00092 34.3 9.6 97 56-157 213-318 (570)
60 3l8c_A D-alanine--poly(phospho 63.9 40 0.0014 32.5 10.5 100 56-157 144-253 (521)
61 4dg8_A PA1221; ANL superfamily 63.1 28 0.00097 34.7 9.4 96 56-156 163-267 (620)
62 3nyq_A Malonyl-COA ligase; A/B 61.7 53 0.0018 31.6 10.8 95 56-156 154-257 (505)
63 3tsy_A Fusion protein 4-coumar 61.4 26 0.0009 37.1 9.2 100 56-156 224-332 (979)
64 3g7s_A Long-chain-fatty-acid-- 60.9 23 0.00079 34.6 8.2 96 57-157 180-283 (549)
65 1amu_A GRSA, gramicidin synthe 58.7 37 0.0012 33.3 9.2 97 56-156 181-287 (563)
66 3ivr_A Putative long-chain-fat 58.4 61 0.0021 31.1 10.7 96 56-157 159-263 (509)
67 3t5a_A Long-chain-fatty-acid-- 58.3 22 0.00076 33.9 7.4 93 56-153 182-292 (480)
68 1pg4_A Acetyl-COA synthetase; 53.6 39 0.0013 33.8 8.5 99 56-157 255-365 (652)
69 3gqw_A Fatty acid AMP ligase; 51.3 39 0.0013 33.0 8.1 98 56-156 175-284 (576)
70 3ezx_A MMCP 1, monomethylamine 50.1 94 0.0032 25.9 9.1 82 244-327 104-195 (215)
71 4gs5_A Acyl-COA synthetase (AM 50.1 44 0.0015 30.5 7.7 94 56-156 36-137 (358)
72 3etc_A AMP-binding protein; ad 49.3 60 0.0021 31.9 9.0 98 56-157 224-331 (580)
73 3ite_A SIDN siderophore synthe 44.9 58 0.002 31.8 8.1 88 69-156 194-286 (562)
74 1ry2_A Acetyl-coenzyme A synth 44.5 1.6E+02 0.0055 29.4 11.4 95 190-289 95-194 (663)
75 2vsq_A Surfactin synthetase su 39.3 76 0.0026 34.9 8.6 97 56-157 606-712 (1304)
76 3tbh_A O-acetyl serine sulfhyd 39.2 88 0.003 28.2 7.7 62 90-151 65-127 (334)
77 4fuq_A Malonyl COA synthetase; 37.8 1.1E+02 0.0038 29.2 8.8 79 211-290 28-109 (503)
78 3ju7_A Putative PLP-dependent 34.1 70 0.0024 29.3 6.4 60 85-148 69-135 (377)
79 3vc3_A Beta-cyanoalnine syntha 32.0 1.4E+02 0.0047 27.0 7.8 92 58-151 51-142 (344)
80 4hlb_A Uncharacterized protein 31.1 1.2E+02 0.0041 20.5 5.2 37 66-102 60-96 (115)
81 3tla_A MCCF; serine protease, 30.9 1.2E+02 0.0041 27.8 7.2 61 90-150 38-117 (371)
82 4h1h_A LMO1638 protein; MCCF-l 28.6 1.1E+02 0.0038 27.4 6.5 60 91-150 8-86 (327)
83 2l66_A SSO7C4, transcriptional 26.9 66 0.0023 19.8 3.3 21 85-105 19-39 (53)
84 4e5s_A MCCFLIKE protein (BA_56 26.2 1.7E+02 0.0058 26.3 7.2 60 91-150 8-86 (331)
85 1yfb_A Transition state regula 24.8 64 0.0022 20.6 3.0 21 84-104 28-48 (59)
86 2jtq_A Phage shock protein E; 24.5 1.3E+02 0.0045 20.2 5.0 45 68-120 22-66 (85)
87 3sr3_A Microcin immunity prote 24.4 1.6E+02 0.0053 26.6 6.6 60 91-150 9-87 (336)
88 1zsy_A Mitochondrial 2-enoyl t 23.8 1.8E+02 0.0061 26.2 7.1 79 69-148 139-222 (357)
89 1o69_A Aminotransferase; struc 23.4 2.7E+02 0.0091 25.3 8.4 57 90-149 67-129 (394)
90 3ri6_A O-acetylhomoserine sulf 22.1 2.4E+02 0.0083 26.3 7.8 54 92-148 118-173 (430)
91 3dzz_A Putative pyridoxal 5'-p 22.1 2.3E+02 0.008 25.4 7.7 54 92-148 106-166 (391)
92 1eg5_A Aminotransferase; PLP-d 21.9 2.4E+02 0.0081 25.2 7.7 56 93-149 87-146 (384)
93 3kki_A CAI-1 autoinducer synth 21.4 1.7E+02 0.0057 26.8 6.5 54 92-149 140-193 (409)
No 1
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=1.1e-72 Score=568.28 Aligned_cols=428 Identities=34% Similarity=0.546 Sum_probs=372.7
Q ss_pred CceeeCCCCCCCCCCCCCCCCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEE
Q 012774 19 TKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTA 98 (456)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V 98 (456)
..+|++..++.+.|. .+|+++++.++++++ |+++|+++..+++++||+||.++++++|+.|++ .|+++||+|
T Consensus 6 ~~i~~~~~~~~~~p~---~~~l~~~l~~~a~~~----p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V 77 (536)
T 3ni2_A 6 EFIFRSKLPDIYIPK---NLPLHSYVLENLSNH----SSKPCLINGANGDVYTYADVELTARRVASGLNK-IGIQQGDVI 77 (536)
T ss_dssp CCCBCCSSCCCCCCS---SCCHHHHHTTTGGGS----TTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEE
T ss_pred ceEEecCCCCCCCCC---CCcHHHHHHHHhhcC----CCceEEEECCCCCEEEHHHHHHHHHHHHHHHHH-cCCCCCCEE
Confidence 346677777776664 379999999999999 999999997667899999999999999999999 899999999
Q ss_pred EEEcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhc----cCCeEEEEcCC-----
Q 012774 99 FVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK----LKHRTILIDSP----- 169 (456)
Q Consensus 99 ~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~----~~~~~~~~~~~----- 169 (456)
+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++.....+.. ...+++.++..
T Consensus 78 ~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (536)
T 3ni2_A 78 MLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPDGCL 157 (536)
T ss_dssp EEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESSCCCTTCE
T ss_pred EEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEecCCCCCcc
Confidence 999999999999999999999999999999999999999999999999999876655442 24555555432
Q ss_pred chhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCC---CCCCCCcEEEEecchhhH
Q 012774 170 EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS---PKRVSPAVMLFTMPYFHI 246 (456)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~ 246 (456)
.+.++..... .........++++++++|||||||.||+|+++|+++.+.+....... .....++++++.+|++|.
T Consensus 158 ~~~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~ 235 (536)
T 3ni2_A 158 HFSELTQADE--NEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHI 235 (536)
T ss_dssp ETHHHHTSCG--GGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSH
T ss_pred CHHHHhhccc--cccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHH
Confidence 1333322211 11223345779999999999999999999999999988876654321 156789999999999999
Q ss_pred hhH-HHHHHHhHhcceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHH
Q 012774 247 YGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIM 325 (456)
Q Consensus 247 ~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~ 325 (456)
+++ ..++.++..|+++++.+.+++..+++.|+++++|++.++|+++..+++.......+++++|.+++||+++++++.+
T Consensus 236 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~ 315 (536)
T 3ni2_A 236 YALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELED 315 (536)
T ss_dssp HHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHH
T ss_pred HHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHH
Confidence 998 5578899999999999999999999999999999999999999999998776777899999999999999999999
Q ss_pred HHHHhCCCCceEeccCcccccccccccc---CCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccc
Q 012774 326 AFASKFPKVVLVQAYGLTESTAGVFRTV---GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402 (456)
Q Consensus 326 ~~~~~~~~~~i~~~yG~tE~~~~~~~~~---~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~g 402 (456)
++++.+|++++++.||+||++.+++.+. ........+++|+|+++++++|+|++++++++.|+.|||+|+|++++.|
T Consensus 316 ~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~G 395 (536)
T 3ni2_A 316 TVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKG 395 (536)
T ss_dssp HHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSE
T ss_pred HHHHHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchh
Confidence 9999999999999999999987655432 1223345688999999999999998889999999999999999999999
Q ss_pred cCCCccccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 403 YVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 403 y~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|+++++.|.+.|+.+|||+|||+|++|+||+++|.||+||+||++|++|+|.||
T Consensus 396 Y~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eI 449 (536)
T 3ni2_A 396 YLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAEL 449 (536)
T ss_dssp ETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHH
T ss_pred hcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHH
Confidence 999999999999889999999999999999999999999999999999999764
No 2
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=1.2e-71 Score=562.39 Aligned_cols=427 Identities=30% Similarity=0.490 Sum_probs=345.1
Q ss_pred CceeeCCCCCCCCCCCCCCCCHHHHhhhcccCCCCCCCCCcEEE---ECCCCceecHHHHHHHHHHHHHHhHhhcCCCCC
Q 012774 19 TKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALI---NSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKN 95 (456)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~A~~---~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~g 95 (456)
..++.++.+..+.+. .|+.++|.++++++ |+++|++ +...++++||+||.++++++|+.|++ .|+++|
T Consensus 5 ~~~~~~~~~~~~~~~----~tl~~~l~~~a~~~----p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~g 75 (550)
T 3rix_A 5 KNIKKGPAPFYPLED----GTAGEQLHKAMKRY----ALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKR-YGLNTN 75 (550)
T ss_dssp GGSEECCCCSSCCCC----SCHHHHHHHHHHHH----HTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-HTCCTT
T ss_pred cceeeCCCCCCCccc----CCHHHHHHHHHHhC----CCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHH-hCCCCC
Confidence 456777777777776 89999999999999 9998875 55457899999999999999999999 899999
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc------CCeEEEEcCC
Q 012774 96 DTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL------KHRTILIDSP 169 (456)
Q Consensus 96 d~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~------~~~~~~~~~~ 169 (456)
|+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++++....+... ...++.++..
T Consensus 76 d~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (550)
T 3rix_A 76 HRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSK 155 (550)
T ss_dssp CEEEEECSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCS
T ss_pred CEEEEEcCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCC
Confidence 9999999999999999999999999999999999999999999999999999998876655421 1233433321
Q ss_pred -------chhhhhcccCCC----cc-ccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCC--CCCCCCc
Q 012774 170 -------EFDSMTMSWNSK----HE-LDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--PKRVSPA 235 (456)
Q Consensus 170 -------~~~~~~~~~~~~----~~-~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~--~~~~~~~ 235 (456)
.+.++....... .. .......++++++++|||||||.||+|+++|+++...+....... ....+++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~ 235 (550)
T 3rix_A 156 TDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDT 235 (550)
T ss_dssp SCBTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTC
T ss_pred ccccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCc
Confidence 122222211110 01 111122457899999999999999999999999998887766552 2567899
Q ss_pred EEEEecchhhHhhHHHHHHHhHhcceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEec
Q 012774 236 VMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACG 315 (456)
Q Consensus 236 ~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~g 315 (456)
++++.+|++|.+++...+.++..|+++++.+.+++..+++.|+++++|+++++|+++..|++.......+++++|.+++|
T Consensus 236 ~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~g 315 (550)
T 3rix_A 236 AILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASG 315 (550)
T ss_dssp EEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEEC
T ss_pred EEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEe
Confidence 99999999999999888899999999999999999999999999999999999999999999877667789999999999
Q ss_pred CCCCCHHHHHHHHHhCCCCceEeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEe
Q 012774 316 AAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIR 395 (456)
Q Consensus 316 G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~ 395 (456)
|+++++++.+++.+.++...+++.||+||++..++... ......+++|+|+++++++|+|+++++++++|+.|||+|+
T Consensus 316 G~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~--~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~ 393 (550)
T 3rix_A 316 GAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITP--EGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR 393 (550)
T ss_dssp SSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECC--TTCCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEE
T ss_pred cCCCCHHHHHHHHHHcCCCccccccCcCccccceecCC--CCCCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEe
Confidence 99999999999999995456999999999988766533 2334668999999999999999888999999999999999
Q ss_pred cCCcccccCCCccccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 396 GPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 396 g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|++++.||+++++.|.+.|+.+|||+|||+|++|+||+++|.||.||+||++|++|+|.||
T Consensus 394 g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eI 454 (550)
T 3rix_A 394 GPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAEL 454 (550)
T ss_dssp STTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-------------------
T ss_pred CCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHH
Confidence 9999999999999999999889999999999999999999999999999999999999986
No 3
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=4.2e-70 Score=550.36 Aligned_cols=423 Identities=31% Similarity=0.475 Sum_probs=360.3
Q ss_pred ceeeCCCCCCCCCCCCCCCCHHH-HhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEE
Q 012774 20 KTFHSLRPPIDLPPEDAPISAVD-YVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTA 98 (456)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V 98 (456)
|.|+++.+..+.|. .+|+.+ ++.++++++ +++|+++...++++||+||.++++++|+.|++ .|+++||+|
T Consensus 10 ~~~~~~~~~~~~p~---~~~l~~~~l~~~~~~~-----~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V 80 (548)
T 2d1s_A 10 IVVGPKPFYPIEEG---SAGTQLRKYMERYAKL-----GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQN-YGLVVDGRI 80 (548)
T ss_dssp SEECCCCSSCCCSS---CHHHHHHHHHHHHHHH-----TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-HTCCTTCEE
T ss_pred eEecCCCCCCCCCC---cCcHHHHHHHhhhccc-----CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHH-cCCCCCCEE
Confidence 56777666555543 258999 888877643 78999985447899999999999999999998 899999999
Q ss_pred EEEcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhc----c--CCeEEEEcCC---
Q 012774 99 FVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK----L--KHRTILIDSP--- 169 (456)
Q Consensus 99 ~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~----~--~~~~~~~~~~--- 169 (456)
+|+++|+++++++++||+++|++++|+++.++.+++.+++++++++++|+++.....+.. . ...++.++..
T Consensus 81 ~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (548)
T 2d1s_A 81 ALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDY 160 (548)
T ss_dssp EEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSCB
T ss_pred EEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCcccc
Confidence 999999999999999999999999999999999999999999999999999877665432 1 2344444432
Q ss_pred ----chhhhhcccCCCccccccCC------CCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccC---CCCCCCCcE
Q 012774 170 ----EFDSMTMSWNSKHELDRAKV------CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFAS---SPKRVSPAV 236 (456)
Q Consensus 170 ----~~~~~~~~~~~~~~~~~~~~------~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~---~~~~~~~~~ 236 (456)
.+.++....... ....... .++++++++|||||||.||+|+++|+++.+.+...... + +..++++
T Consensus 161 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~-~~~~~d~ 238 (548)
T 2d1s_A 161 RGYQCLDTFIKRNTPP-GFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGN-QVSPGTA 238 (548)
T ss_dssp TTBCBHHHHHHHTSCT-TCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSC-CCCTTCE
T ss_pred cccccHHHHHhcCccc-cCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhcc-CCCccce
Confidence 244443322111 0111111 23899999999999999999999999999888776665 4 5678999
Q ss_pred EEEecchhhHhhHHH-HHHHhHhcceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEec
Q 012774 237 MLFTMPYFHIYGLFF-CFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACG 315 (456)
Q Consensus 237 ~~~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~g 315 (456)
+++.+|++|.+++.. ++.++ .|+++++.+.+++..+++.|+++++|+++++|+++..|.+.......+++++|.+++|
T Consensus 239 ~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~g 317 (548)
T 2d1s_A 239 VLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASG 317 (548)
T ss_dssp EEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEEC
T ss_pred EEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEc
Confidence 999999999999865 55666 9999999999999999999999999999999999999998766556678999999999
Q ss_pred CCCCCHHHHHHHHHhCCCCceEeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEe
Q 012774 316 AAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIR 395 (456)
Q Consensus 316 G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~ 395 (456)
|+++++++.+++.+.+++.++++.||+||++..++.. .....+.+++|+|+++++++|+|+++++++++|+.|||+|+
T Consensus 318 G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~--~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~ 395 (548)
T 2d1s_A 318 GAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIIT--PEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVK 395 (548)
T ss_dssp SSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEEC--CTTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEE
T ss_pred CccCCHHHHHHHHHHcCCCceeeccccccccceeeec--CcccCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEEC
Confidence 9999999999999999889999999999998776552 22234568999999999999999888999999999999999
Q ss_pred cCCcccccCCCccccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 396 GPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 396 g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|+.++.||+++++.|.+.|+.+|||+|||+|++|+||+++|.||.||+||++|++|+|.|+
T Consensus 396 g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eI 456 (548)
T 2d1s_A 396 GPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAEL 456 (548)
T ss_dssp STTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHH
T ss_pred CHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHH
Confidence 9999999999999999999889999999999999999999999999999999999999764
No 4
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=2.5e-70 Score=552.78 Aligned_cols=421 Identities=27% Similarity=0.389 Sum_probs=347.9
Q ss_pred eCCCCCCCCCCCCCCCCHHHHhhhcccCCCCCCCCCcEEEECCC------CceecHHHHHHHHHHHHHHhHhhcCCCCCC
Q 012774 23 HSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVT------GLRVSFSEFTRRTNSLASYLQNVTRLSKND 96 (456)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~------~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd 96 (456)
+...|+...|. +|+.++|.++++++ |+++|+++.+. .+++||+||.++++++|+.|.+ .|+++||
T Consensus 8 ~~~~p~~~~~~----~~l~~~l~~~a~~~----p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd 78 (549)
T 3g7s_A 8 KIGFPSLYYPK----ISLADRIDAAAEKF----GEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISR-KGVRKGE 78 (549)
T ss_dssp CCCCCCCCCCC----CCTTHHHHHHHHHH----TTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHH-TTCCTTC
T ss_pred ccCCCCCCcCC----CCHHHHHHHHHHhC----CCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHH-cCCCCCC
Confidence 34444444554 89999999999999 99999998732 1899999999999999999998 8999999
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhc----cCCe-EEEEc--CC
Q 012774 97 TAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK----LKHR-TILID--SP 169 (456)
Q Consensus 97 ~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~----~~~~-~~~~~--~~ 169 (456)
+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++.....+.. .... +++.+ ..
T Consensus 79 ~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (549)
T 3g7s_A 79 HVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGGEVN 158 (549)
T ss_dssp EEEEECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEETCSSS
T ss_pred EEEEECCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeCCCCc
Confidence 99999999999999999999999999999999999999999999999999999887765542 2233 33333 22
Q ss_pred chhhhhcccCCCccccccCCC-CCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhh
Q 012774 170 EFDSMTMSWNSKHELDRAKVC-QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYG 248 (456)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~-~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g 248 (456)
.+.++...... ........ ++++++++|||||||.||+|+++|+++.+.+......+ +..+.+++++.+|++|.++
T Consensus 159 ~~~~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~~ 235 (549)
T 3g7s_A 159 SLSEVMDSGSE--DFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-GLSHMDTIVGCMPMFHSAE 235 (549)
T ss_dssp CHHHHHHHSCS--CCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-CCCTTCEEECCSCTTSHHH
T ss_pred CHHHHHhcCcc--ccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-CCCCCCEEEEeCcHHHHHH
Confidence 34444333221 11122233 38999999999999999999999999999888777766 6789999999999999999
Q ss_pred HHHHHHHhHhcceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCC--CCCCCceEEEecCCCCCHHHHHH
Q 012774 249 LFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDG--YDLSSLETVACGAAPLGKDTIMA 326 (456)
Q Consensus 249 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~l~~lr~v~~gG~~~~~~~~~~ 326 (456)
+..++.++..|+++++.+.+++..+++.|+++++|+++++|+++..|++...... .+++++|.+++||+++++++.++
T Consensus 236 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~ 315 (549)
T 3g7s_A 236 FGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEK 315 (549)
T ss_dssp HHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHH
T ss_pred HHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHH
Confidence 9778889999999999999999999999999999999999999999987643332 56899999999999999999999
Q ss_pred HHHh----C--CCCceEeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcc
Q 012774 327 FASK----F--PKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIM 400 (456)
Q Consensus 327 ~~~~----~--~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~ 400 (456)
+.+. + |++++++.||+||++.+++.... .......++|+|+++++++|+|++++++++.|+.|||+|+|+.++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~-~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~ 394 (549)
T 3g7s_A 316 LLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPP-LRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIF 394 (549)
T ss_dssp HHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCG-GGGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTSC
T ss_pred HHHHHHhhcCCccccccceEeccccchhhhcCCc-cccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcchh
Confidence 9987 5 34899999999999887665332 222456889999999999999988999999999999999999999
Q ss_pred cccCCCccccccccC--CCC--eeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 401 KGYVGEPEVTSATLL--PDG--WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 401 ~gy~~~~~~~~~~~~--~~g--~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
.||+++++.+++.|. .+| ||+|||+|++|+||+|+|.||.||+||++|++|+|.||
T Consensus 395 ~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eI 454 (549)
T 3g7s_A 395 KGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFEL 454 (549)
T ss_dssp SEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHH
T ss_pred hhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHH
Confidence 999999999999884 567 99999999999999999999999999999999999874
No 5
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1.9e-69 Score=540.29 Aligned_cols=404 Identities=27% Similarity=0.408 Sum_probs=345.5
Q ss_pred HHhhhcccCCCCCCCCCcEEEE-CCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCC
Q 012774 42 DYVSSLRATLPWRDDDTVALIN-SVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGV 120 (456)
Q Consensus 42 ~~l~~~~~~~~~~~p~~~A~~~-~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~~G~ 120 (456)
+++.+.++++ |+++|+.. ...++++||+||.++++++|+.|++ .|+++||+|+++++|++++++++|||+++|+
T Consensus 4 ~l~~~~a~~~----p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga 78 (503)
T 4fuq_A 4 NLFARLFDKL----DDPHKLAIETAAGDKISYAELVARAGRVANVLVA-RGLQVGDRVAAQTEKSVEALVLYLATVRAGG 78 (503)
T ss_dssp CHHHHHHSCC----SCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHhC----CCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHcCc
Confidence 4667778888 88888763 1237899999999999999999999 8999999999999999999999999999999
Q ss_pred eEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHh----ccCCeEEEEcCCchhhhhcc-cCCCccccccCCCCCCEE
Q 012774 121 IISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLA----KLKHRTILIDSPEFDSMTMS-WNSKHELDRAKVCQSDVA 195 (456)
Q Consensus 121 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a 195 (456)
+++|+++.++.+++.+++++++++++|+++.....+. .....+..++......+... .............+++++
T Consensus 79 ~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a 158 (503)
T 4fuq_A 79 VYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLA 158 (503)
T ss_dssp EEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCTTSCSHHHHHHHTSCSCCCCCCCCTTSEE
T ss_pred EEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecCCcccccchhhhcCCCCcCcCCCCCCCeE
Confidence 9999999999999999999999999999876543222 22334444432221111100 001112223345679999
Q ss_pred EEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhH-HHHHHHhHhcceEEEecCCCHHHHH
Q 012774 196 AIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMML 274 (456)
Q Consensus 196 ~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~ 274 (456)
+++|||||||.||+|+++|+++.+........+ ...+++++++.+|++|.+++ ...+.++..|+++++.+.++++.++
T Consensus 159 ~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~ 237 (503)
T 4fuq_A 159 AILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-RFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKIL 237 (503)
T ss_dssp EEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCHHHHH
T ss_pred EEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-CCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCCCHHHHH
Confidence 999999999999999999999999888877777 78899999999999999997 5577889999999999999999999
Q ss_pred HHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccccC
Q 012774 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354 (456)
Q Consensus 275 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~ 354 (456)
+.++ ++|+++++|+++..+++........++++|.+++||+++++++.+.|.+.+ +.++++.||+||++..... .
T Consensus 238 ~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~--~ 312 (503)
T 4fuq_A 238 DLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKT-GHAVLERYGMTETNMNTSN--P 312 (503)
T ss_dssp HHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHH-SCCEEECCEETTTEECBCC--C
T ss_pred HHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHh-CCCccceEcccccCccccc--C
Confidence 9998 899999999999999998777777789999999999999999999999988 8899999999999876543 2
Q ss_pred CCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEccCCcE
Q 012774 355 PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFL 434 (456)
Q Consensus 355 ~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l 434 (456)
.......+++|+|+++++++|+|++++++++.|+.|||+|+|++++.||+++++.+.+.|..+|||+|||+|++|+||++
T Consensus 313 ~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l 392 (503)
T 4fuq_A 313 YDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYV 392 (503)
T ss_dssp SSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEE
T ss_pred CCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcE
Confidence 23344568899999999999999889999999999999999999999999999999999988999999999999999999
Q ss_pred EEecccccceeeCCeeecCCCC
Q 012774 435 FIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 435 ~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+|.||.||+||++|++|+|.||
T Consensus 393 ~~~GR~dd~ik~~G~~v~p~eI 414 (503)
T 4fuq_A 393 HILGRGKDLVITGGFNVYPKEI 414 (503)
T ss_dssp EECCSSTTCEEETTEEECHHHH
T ss_pred EEEecCCCEEEECCEEECHHHH
Confidence 9999999999999999999764
No 6
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=5.4e-69 Score=577.13 Aligned_cols=437 Identities=36% Similarity=0.552 Sum_probs=359.0
Q ss_pred CCCCCCCCceeeCCCCCCCCCCCCCCCCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcC
Q 012774 12 KSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTR 91 (456)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~g 91 (456)
.+..+.....|++..++.+.|. .+|++++|.++++++ |+++|+++..+++++||+||.++++++|+.|++ .|
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~p~---~~tl~~~l~~~a~~~----pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~-~G 109 (979)
T 3tsy_A 38 QSNNNNSDVIFRSKLPDIYIPN---HLSLHDYIFQNISEF----ATKPCLINGPTGHVYTYSDVHVISRQIAANFHK-LG 109 (979)
T ss_dssp -------CCCBCCSSCCCCCCT---TSCHHHHHTTTGGGT----TTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-TT
T ss_pred cccCCCCCceeecCCCCCCCCC---CCCHHHHHHHHHHhC----CCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHH-cC
Confidence 3444555667777777766653 379999999999999 999999997667899999999999999999999 89
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHh----ccCCeEEEEc
Q 012774 92 LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLA----KLKHRTILID 167 (456)
Q Consensus 92 i~~gd~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~----~~~~~~~~~~ 167 (456)
+++||+|+|+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|+++...+.+. .....++.++
T Consensus 110 v~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 189 (979)
T 3tsy_A 110 VNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCID 189 (979)
T ss_dssp CCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECC
T ss_pred CCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeC
Confidence 999999999999999999999999999999999999999999999999999999999977654432 2244455544
Q ss_pred CC----------chhhhhcccCC-CccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCC---CCCCC
Q 012774 168 SP----------EFDSMTMSWNS-KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS---PKRVS 233 (456)
Q Consensus 168 ~~----------~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~---~~~~~ 233 (456)
.. .+.++...... ..........++++++++|||||||.||+|+++|+++.+.+....... ....+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~ 269 (979)
T 3tsy_A 190 DNESVPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHS 269 (979)
T ss_dssp CCTTSCCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCS
T ss_pred CcccccCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCC
Confidence 32 12222221110 001222345779999999999999999999999999998877654322 14678
Q ss_pred CcEEEEecchhhHhhH-HHHHHHhHhcceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEE
Q 012774 234 PAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETV 312 (456)
Q Consensus 234 ~~~~~~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v 312 (456)
++++++.+|++|.+++ ..++.++..|+++++.+.+++..+++.|+++++|++.++|+++..|.+.......+++++|.+
T Consensus 270 ~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~ 349 (979)
T 3tsy_A 270 DDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVV 349 (979)
T ss_dssp SCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEE
T ss_pred CCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEE
Confidence 9999999999999998 557888999999999999999999999999999999999999999999877677789999999
Q ss_pred EecCCCCCHHHHHHHHHhCCCCceEeccCcccccccccccc---CCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCc
Q 012774 313 ACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV---GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKE 389 (456)
Q Consensus 313 ~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~---~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~ 389 (456)
++||+++++++.+++++.+|++++++.||+||++.+++... ........+++|+|+++++++|+|+++++++++|+.
T Consensus 350 ~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~ 429 (979)
T 3tsy_A 350 KSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQP 429 (979)
T ss_dssp EESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCC
T ss_pred EEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCc
Confidence 99999999999999999999999999999999987655432 122334567899999999999999888999999999
Q ss_pred ceEEEecCCcccccCCCccccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 390 GELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 390 Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|||+|+|+.+++||+++|+.|.+.|+.+|||+|||+|++|+||+|+|+||.||+||++|++|+|.||
T Consensus 430 GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eI 496 (979)
T 3tsy_A 430 GEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAEL 496 (979)
T ss_dssp EEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC--------------
T ss_pred cEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHH
Confidence 9999999999999999999999999889999999999999999999999999999999999999986
No 7
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=7.2e-70 Score=547.91 Aligned_cols=406 Identities=24% Similarity=0.316 Sum_probs=347.3
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
.|+.++|.++++++ |+++|+++. ++++||+||.++++++|+.|++ .|+++||+|+++++|++++++++|||++
T Consensus 25 ~tl~~~l~~~a~~~----p~~~A~~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 97 (539)
T 1mdb_A 25 ETFGDLLRDRAAKY----GDRIAITCG--NTHWSYRELDTRADRLAAGFQK-LGIQQKDRVVVQLPNIKEFFEVIFALFR 97 (539)
T ss_dssp CCHHHHHHHHHHHH----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HTCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHC----CCCEEEEeC--CCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHHH
Confidence 69999999999999 999999997 7899999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccch--------HHHHh-cc-CCe-EEEEcC-CchhhhhcccCCCcccc
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSV--------VHKLA-KL-KHR-TILIDS-PEFDSMTMSWNSKHELD 185 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~--------~~~~~-~~-~~~-~~~~~~-~~~~~~~~~~~~~~~~~ 185 (456)
+|++++|+++.++.+++.+++++++++++|+++.. ...+. .. ..+ +++.+. ..+.++...... ...
T Consensus 98 ~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 175 (539)
T 1mdb_A 98 LGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTE--PVK 175 (539)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTTSEEGGGCCCC--CCC
T ss_pred cCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCccchhhhhhcccc--ccc
Confidence 99999999999999999999999999999998753 12221 11 122 333332 123222221110 111
Q ss_pred ccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHH--HHHHHhHhcceEE
Q 012774 186 RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF--FCFRAAALMETAV 263 (456)
Q Consensus 186 ~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~--~~~~~l~~G~~~~ 263 (456)
.....++++++++|||||||.||+|+++|+++.+.+......+ +..+++++++.+|++|.+++. .++.++..|++++
T Consensus 176 ~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 176 LPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-WLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-TCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred cCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-CCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 2345678999999999999999999999999998887776666 678899999999999999985 5889999999999
Q ss_pred EecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCcc
Q 012774 264 VMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLT 343 (456)
Q Consensus 264 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~t 343 (456)
+.+.+++..+++.|+++++|+++++|+++..+++.......+++++|.+++||+++++++.+++++.+ ++++++.||+|
T Consensus 255 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~T 333 (539)
T 1mdb_A 255 LSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGMA 333 (539)
T ss_dssp ECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEEEECT
T ss_pred ECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHh-CCcEEEEEcCC
Confidence 99999999999999999999999999999999876544556789999999999999999999999988 89999999999
Q ss_pred ccccccccccCCCCCCCCCccccccCCc-EEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeec
Q 012774 344 ESTAGVFRTVGPDECRRWGSTGRLSAGL-EAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRT 422 (456)
Q Consensus 344 E~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~T 422 (456)
|++..+.. .........+++|+|+++. +++|+| +++++++.|+.|||+|+|++++.||+++++.|.+.|..+|||+|
T Consensus 334 E~~~~~~~-~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~T 411 (539)
T 1mdb_A 334 EGLVNYTR-LDDPEEIIVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRT 411 (539)
T ss_dssp TSCEEECC-TTSCHHHHHHCCCEESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEE
T ss_pred CCcccccC-CCCcHHhcCCCCCcccCCCceEEEEC-CCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeec
Confidence 96543322 1111112346899999765 899999 78999999999999999999999999999999999988999999
Q ss_pred cceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 423 GDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 423 GDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
||+|++|+||+|+|.||+||+||++|++|+|.||
T Consensus 412 GDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eI 445 (539)
T 1mdb_A 412 GDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEV 445 (539)
T ss_dssp EEEEEECTTSCEEEEEEGGGCEECSSCEECHHHH
T ss_pred CceEEECCCCcEEEeccccceEEECCEEECHHHH
Confidence 9999999999999999999999999999999764
No 8
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=9.4e-70 Score=544.31 Aligned_cols=407 Identities=26% Similarity=0.361 Sum_probs=350.3
Q ss_pred CCCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 012774 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (456)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~ 116 (456)
..|+.++|.++++++ |+++|+++.+.+.++||+||.++++++|+.|.+ .|+++||+|+++++|++++++++|||+
T Consensus 15 ~~~l~~~l~~~a~~~----p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 89 (517)
T 3r44_A 15 MKNIGWMLRQRATVS----PRLQAYVEPSTDVRMTYAQMNALANRCADVLTA-LGIAKGDRVALLMPNSVEFCCLFYGAA 89 (517)
T ss_dssp GGCHHHHHHHHHHHS----TTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHhC----CCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHH-cCCCCcCEEEEEcCCCHHHHHHHHHHH
Confidence 479999999999999 999999998444599999999999999999999 899999999999999999999999999
Q ss_pred HhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc----C--CeEE-EEcCCchhhhhcccCCCccccccCC
Q 012774 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----K--HRTI-LIDSPEFDSMTMSWNSKHELDRAKV 189 (456)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (456)
++|++++|+++.++.+++.+++++++++++|+++.....+... . ..++ ......+.+....... .......
T Consensus 90 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 167 (517)
T 3r44_A 90 KLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLRSAAA--DEPAVEC 167 (517)
T ss_dssp HHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEEHHHHHHHHHHCCC--CCCCCCC
T ss_pred HhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccCcccHHHHhhccCc--CCCCCCC
Confidence 9999999999999999999999999999999998776654321 1 1111 1111122222222111 2223345
Q ss_pred CCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEecCCC
Q 012774 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFD 269 (456)
Q Consensus 190 ~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~ 269 (456)
.++++++++|||||||.||+|+++|+++.+.+......+ +...++++++.+|++|.+++...+.++..|+++++.+.++
T Consensus 168 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~~~~ 246 (517)
T 3r44_A 168 GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-DVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFD 246 (517)
T ss_dssp CTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-CCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCC
T ss_pred CCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-CCCCCCEEEEeCchHHHHHHHHHHHHHhcCeEEEEeCCCC
Confidence 779999999999999999999999999999988877777 7889999999999999999977666666999999999999
Q ss_pred HHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCcccccccc
Q 012774 270 LKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV 349 (456)
Q Consensus 270 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~ 349 (456)
+..+++.|+++++|++.++|+++..|.+.......+++++|.+++||+++++++.+.+.+. ++++++.||+||++..+
T Consensus 247 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~~~YG~TE~~~~~ 324 (517)
T 3r44_A 247 ATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALTESCGGG 324 (517)
T ss_dssp HHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEECGGGTTCE
T ss_pred HHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc--CCcEEEeecccccccce
Confidence 9999999999999999999999999988765555678899999999999999999999987 89999999999998776
Q ss_pred ccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEc
Q 012774 350 FRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYID 429 (456)
Q Consensus 350 ~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~ 429 (456)
+.....+.....+++|+|+++++++|+| +++..++.| .|||+|+|+.++.||+++|+.+.+.| .+|||+|||+|++|
T Consensus 325 ~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~~~TGDl~~~~ 401 (517)
T 3r44_A 325 TLLLSEDALRKAGSAGRATMFTDVAVRG-DDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEID 401 (517)
T ss_dssp EEECGGGTTTTTTCCBEECTTEEEEEEC-TTSCEESSE-EEEEEEEETTSCSEETTCHHHHHHTE-ETTEEEEEEEEEEC
T ss_pred eecCCccccccCCCCCcCCCCeEEEEEC-CCCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhh-cCCCEecceeEEEc
Confidence 6544333345678999999999999999 778888888 89999999999999999999999999 68999999999999
Q ss_pred cCCcEEEecccccceeeCCeeecCCCC
Q 012774 430 EDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 430 ~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+||+++|.||.||+||++|++|+|.||
T Consensus 402 ~dG~l~~~GR~dd~ik~~G~~v~p~eI 428 (517)
T 3r44_A 402 DEGYLYIKDRLKDMIISGGENVYPAEI 428 (517)
T ss_dssp TTSCEEEEECGGGCEEETTEEECHHHH
T ss_pred CCeeEEEecCCcCEEEECCEEECHHHH
Confidence 999999999999999999999999764
No 9
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=1.6e-69 Score=545.98 Aligned_cols=407 Identities=22% Similarity=0.272 Sum_probs=336.7
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
.|+.++|.++++++ |+++|+++. ++++||+||.++++++|+.|++ .|+++||+|+|+++|++++++++|||++
T Consensus 30 ~tl~~~l~~~a~~~----p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~~ 102 (544)
T 3o83_A 30 QPLTRILTVGVQSH----PHSLAIICG--ERQLSYIELDRLSTNLATRLAE-KGLGKGDTALVQLPNVAEFYIVFFALLK 102 (544)
T ss_dssp CCTTHHHHHHHHHC----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhC----CCceEEEcC--CCceeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 69999999999999 999999998 8899999999999999999999 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchH--------HHHhcc--CC-eEEEEcCC----chhhhhcccCCCc
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV--------HKLAKL--KH-RTILIDSP----EFDSMTMSWNSKH 182 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--------~~~~~~--~~-~~~~~~~~----~~~~~~~~~~~~~ 182 (456)
+|++++|+++.++.+++.+++++++++++|+++... ..+... .. .++..+.. .+.++..... ..
T Consensus 103 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 181 (544)
T 3o83_A 103 AGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIETPA-ET 181 (544)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTTSEEHHHHHHSCC-SS
T ss_pred hCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCccccchhhhhhccc-cc
Confidence 999999999999999999999999999999987542 222211 12 23333322 1222222111 11
Q ss_pred cccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHH--HHHHHhHhcc
Q 012774 183 ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF--FCFRAAALME 260 (456)
Q Consensus 183 ~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~--~~~~~l~~G~ 260 (456)
........++++++++|||||||.||+|+++|+++...+......+ +..+++++++.+|++|.+++. .++.++..|+
T Consensus 182 ~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~ 260 (544)
T 3o83_A 182 FVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-GLNSNTRLLCALPAPHNFMLSSPGALGVLHAGG 260 (544)
T ss_dssp CCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTC
T ss_pred ccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-CCCCCCeEEEecCcceEeecchHHHHHHHHcCC
Confidence 1112345678999999999999999999999999999988887777 788999999999999999884 5889999999
Q ss_pred eEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEecc
Q 012774 261 TAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAY 340 (456)
Q Consensus 261 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~y 340 (456)
++++.+.+++..+++.|+++++|+++++|+++..+++.......+++++|.+++||+++++++.+++.+.+ ++++++.|
T Consensus 261 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~~~~Y 339 (544)
T 3o83_A 261 CVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVL-NCKLQQVF 339 (544)
T ss_dssp EEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHH-CSEEEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEeee
Confidence 99999999999999999999999999999999999887655556688999999999999999999999998 89999999
Q ss_pred CccccccccccccCCCCCCCCCcccccc-CCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCe
Q 012774 341 GLTESTAGVFRTVGPDECRRWGSTGRLS-AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGW 419 (456)
Q Consensus 341 G~tE~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~ 419 (456)
|+||++..+... .........++|+|+ ++.+++|+| ++++++++|+.|||+|+|++++.||+++++.+.+.|+.+||
T Consensus 340 G~TE~~~~~~~~-~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~ 417 (544)
T 3o83_A 340 GMAEGLVNYTRL-DDSDEQIFTTQGRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNY 417 (544)
T ss_dssp ECTTSCEEECCT-TSCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCC
T ss_pred ccccccceeecC-CCchhhccCCCceecCCCcEEEEEC-CCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCC
Confidence 999987554432 112222346899996 899999999 88999999999999999999999999999999999988999
Q ss_pred eeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 420 MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 420 ~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|+|||+|++|+||+++|.||.||+||++|++|+|.||
T Consensus 418 ~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eI 454 (544)
T 3o83_A 418 YYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEI 454 (544)
T ss_dssp EEEEEEEEECTTSCEEEEEEEC---------------
T ss_pred eEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHH
Confidence 9999999999999999999999999999999999986
No 10
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=3.7e-69 Score=549.07 Aligned_cols=397 Identities=19% Similarity=0.165 Sum_probs=339.6
Q ss_pred CCCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 012774 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (456)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~ 116 (456)
..|+.++|.++++++ |+++|+++. ++++||+||.++++++|+.|++ .|+++||+|+++++|++++++++|||+
T Consensus 26 ~~tl~~~~~~~a~~~----Pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~g~~V~i~~~~s~~~vva~lail 98 (620)
T 4dg8_A 26 HPTVVARFSEMAALH----PHREAIRDR--FGSVDYRQLLDSAEQLSDYLLE-HYPQPGVCLGVYGEYSRESITCLLAIL 98 (620)
T ss_dssp SCCHHHHHHHHHHHC----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HCCSSCCEEEEESSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCeEEEcC--CCcCcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 369999999999999 999999998 8899999999999999999999 899999999999999999999999999
Q ss_pred HhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhccCCeEEEEcCCchhhhhcccCCCccccccCCCCCCEEE
Q 012774 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA 196 (456)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 196 (456)
++|++++|++|.++.+++.+++++++++++++++....... ......+ ... .............++++++
T Consensus 99 kaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~--~~~~~~~-----~~~---~~~~~~~~~~~~~~~d~a~ 168 (620)
T 4dg8_A 99 LSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPAN--GLPCVPV-----RHL---PAAPASVARPCFAADQIAY 168 (620)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCT--TSCEEEG-----GGC---CCCCCCSSCCCCCTTSEEE
T ss_pred HhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCccccccc--CCceeee-----ccC---CcCCccccCCCCCCCCeEE
Confidence 99999999999999999999999999999997654322111 1111111 110 0001112223346799999
Q ss_pred EEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEec--CCCHHHHH
Q 012774 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ--RFDLKMML 274 (456)
Q Consensus 197 i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~--~~~~~~~~ 274 (456)
++|||||||.||+|+++|+++.+.+.. ...+ ...+++++++.+|++|..++..++.++..|+++++.+ .+++..++
T Consensus 169 iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~ 246 (620)
T 4dg8_A 169 INFSSGTTGRPKAIACTHAGITRLCLG-QSFL-AFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLR 246 (620)
T ss_dssp EEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-TTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSCCHHHHH
T ss_pred EEECCCccccCeEEEEchHHHHHHHHH-HHhh-CCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccccCCHHHHH
Confidence 999999999999999999999876654 3333 6788999999999999999988999999999999964 57999999
Q ss_pred HHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccccC
Q 012774 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354 (456)
Q Consensus 275 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~ 354 (456)
+.|+++++|+++++|+++..|.+.. ...++++|.+++|||+++++..+++.+.++++++++.||+||++.+++....
T Consensus 247 ~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~ 323 (620)
T 4dg8_A 247 QLIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVV 323 (620)
T ss_dssp HHHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEEC
T ss_pred HHHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEec
Confidence 9999999999999999999998642 3357899999999999999999999988889999999999999877654332
Q ss_pred C--CCCCCCCccccccCCcEEEEEcCCCCCC-CCCCCcceEEEecCCcccccCCCccccccccCCC-------Ceeeccc
Q 012774 355 P--DECRRWGSTGRLSAGLEAKIVDPETGDS-LPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPD-------GWMRTGD 424 (456)
Q Consensus 355 ~--~~~~~~~~~G~~~~~~~~~i~d~~~~~~-~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~-------g~~~TGD 424 (456)
. .......++|+|+++++++|+| +++++ ++.|+.|||+|+|+++++||+++++.|++.|..+ +||+|||
T Consensus 324 ~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGD 402 (620)
T 4dg8_A 324 TDDDLEEDDIPIGKAIAGTAVLLLD-EHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGD 402 (620)
T ss_dssp CTGGGGSSSCCCBEECTTEEEEEEC-TTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEE
T ss_pred cccccCCCCCCceecccCcEEEEEC-ccCCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCC
Confidence 2 2223457899999999999999 45554 8899999999999999999999999999999653 7999999
Q ss_pred eEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 425 LCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 425 l~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+|++++||+|+|+||.||+||++|+||+|.||
T Consensus 403 l~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eI 434 (620)
T 4dg8_A 403 RARYDEQGRLRFIGRGDGQVKLNGYRLDLPAL 434 (620)
T ss_dssp EEEECTTSCEEEEECSSSEEEETTEEEEHHHH
T ss_pred EEEECCCCeEEEEccCCCEEEECCEEcCHHHH
Confidence 99999999999999999999999999999774
No 11
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=5.5e-69 Score=538.84 Aligned_cols=405 Identities=20% Similarity=0.288 Sum_probs=347.9
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
||+.++|.+.++++ |+++|+++. ++++||+||.++++++|+.|.+ .|+++||+|+++++|++++++++|||++
T Consensus 1 m~l~~~l~~~a~~~----p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~-~g~~~gd~V~i~~~n~~e~~~~~la~~~ 73 (512)
T 3fce_A 1 MKLLEQIEKWAAET----PDQTAFVWR--DAKITYKQLKEDSDALAHWISS-EYPDDRSPIMVYGHMQPEMIINFLGCVK 73 (512)
T ss_dssp CCHHHHHHHHHHHS----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HSTTCCCCEEEEESSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHC----CCceEEEeC--CceEEHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 68999999999999 999999998 7899999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhccCCeEEEEcCCchhhhhcccCCCccccccCCCCCCEEEE
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAI 197 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 197 (456)
+|++++|+++.++.+++.++++++++++++++..... ......++ ....+...................+++++++
T Consensus 74 ~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i 149 (512)
T 3fce_A 74 AGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTV--TDLPVRIV--SEDNLKDIFFTHKGNTPNPEHAVKGDENFYI 149 (512)
T ss_dssp TTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCS--SCCSSEEE--ETHHHHHHHHHTTTCCCCGGGSCCTTSEEEE
T ss_pred hCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccc--ccccccee--chhhhhhhcccccccCCCccccCCCCCeEEE
Confidence 9999999999999999999999999999999754321 11112222 1112222211111111222344677999999
Q ss_pred EcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEecC---CCHHHHH
Q 012774 198 MYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKMML 274 (456)
Q Consensus 198 ~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~---~~~~~~~ 274 (456)
+|||||||.||+|+++|+++.+.+......+ +..++|++++.+|++|..++..++.++..|+++++.+. +++..++
T Consensus 150 ~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~ 228 (512)
T 3fce_A 150 IYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-NLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLF 228 (512)
T ss_dssp EEECC----CEEEEEEHHHHHHHHHHHHHHT-TCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHH
T ss_pred EECCCCCCCCceEEEehHHHHHHHHHHHHhc-CCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHH
Confidence 9999999999999999999999888877777 78899999999999999999889999999999999976 7899999
Q ss_pred HHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccccC
Q 012774 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354 (456)
Q Consensus 275 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~ 354 (456)
+.++++++|++.++|+++..++.........++++|.+++||+++++++.+++.+.++++++++.||+||++..++....
T Consensus 229 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~ 308 (512)
T 3fce_A 229 ASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHV 308 (512)
T ss_dssp HHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEC
T ss_pred HHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEe
Confidence 99999999999999999999998877777789999999999999999999999999999999999999999877664322
Q ss_pred CC---CCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCcccccccc---CCCCeeeccceEEE
Q 012774 355 PD---ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATL---LPDGWMRTGDLCYI 428 (456)
Q Consensus 355 ~~---~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~---~~~g~~~TGDl~~~ 428 (456)
.. ......++|+|.++++++|+| ++++++++|+.|||+|+|++++.||+++++.+++.| +.++||+|||+|++
T Consensus 309 ~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~ 387 (512)
T 3fce_A 309 TEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV 387 (512)
T ss_dssp CHHHHHHCSSCCCEEECTTCEEEEEC-SSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE
T ss_pred ccccccccCCCccccccCCcEEEEEC-CCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe
Confidence 11 123457899999999999999 889999999999999999999999999999999887 34679999999999
Q ss_pred ccCCcEEEecccccceeeCCeeecCCCC
Q 012774 429 DEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 429 ~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+||+++|.||.||+||++|++|+|.|+
T Consensus 388 -~dG~l~i~GR~~d~ik~~G~~v~p~eI 414 (512)
T 3fce_A 388 -ENGLLFYNGRLDFQIKLHGYRMELEEI 414 (512)
T ss_dssp -ETTEEEEEEEGGGCEEETTEEECHHHH
T ss_pred -cCCEEEEecccCCEEEECCEEECHHHH
Confidence 899999999999999999999999764
No 12
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=9.2e-69 Score=540.07 Aligned_cols=405 Identities=24% Similarity=0.365 Sum_probs=344.3
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEEC--CCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINS--VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSL 115 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~--~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~ 115 (456)
.|+.+++.++++++ |+++|+++. ..++++||+||.++++++|+.|++ .|+++||+|+++++|++++++++|||
T Consensus 18 ~~l~~~l~~~a~~~----p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA~ 92 (541)
T 1v25_A 18 LNLWDFLERAAALF----GRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRA-LGVGVGDRVATLGFNHFRHLEAYFAV 92 (541)
T ss_dssp CCTHHHHHHHHHHS----TTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhC----CCceEEEEecCCCCceecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 69999999999999 999999852 235789999999999999999998 89999999999999999999999999
Q ss_pred HHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc-----CC-eEEEEcCC------chhhhhcccCCCcc
Q 012774 116 LSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KH-RTILIDSP------EFDSMTMSWNSKHE 183 (456)
Q Consensus 116 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~-~~~~~~~~------~~~~~~~~~~~~~~ 183 (456)
+++|++++|+++.++.+++.+++++++++++|++++....+... .. .++.++.. .++++.....
T Consensus 93 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 168 (541)
T 1v25_A 93 PGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEA---- 168 (541)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEHHHHCCSCC----
T ss_pred HhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCcccccHHHHhhccC----
Confidence 99999999999999999999999999999999998876654421 12 23443322 1333222111
Q ss_pred ccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHh--ccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcce
Q 012774 184 LDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASS--FASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMET 261 (456)
Q Consensus 184 ~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~ 261 (456)
......++++++++|||||||.||+|+++|+++....... ...+ ...++|++++.+|++|.+++..++.++..|++
T Consensus 169 -~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~ 246 (541)
T 1v25_A 169 -DPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-ALSEKDVVLPVVPMFHVNAWCLPYAATLVGAK 246 (541)
T ss_dssp -CCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-CCCTTCEEEECSCTTSHHHHTHHHHHHHHTCE
T ss_pred -CcccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-cCCCCCEEEEeccchhhhHHHHHHHHHhcCce
Confidence 1133466899999999999999999999999998776653 2333 57889999999999999998777889999999
Q ss_pred EEEecC-CCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEecc
Q 012774 262 AVVMQR-FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAY 340 (456)
Q Consensus 262 ~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~y 340 (456)
+++.+. +++..+++.|+++++|+++++|+++..|++.......+++++|.+++||+++++++.+++ +.+ ++++++.|
T Consensus 247 ~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~~~~~Y 324 (541)
T 1v25_A 247 QVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERM-GVEVRQGY 324 (541)
T ss_dssp EEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHT-TCEEEEEE
T ss_pred EEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHh-CCceeecc
Confidence 999864 799999999999999999999999999987654444568899999999999999999999 556 89999999
Q ss_pred CccccccccccccCCCC---------CCCCCccccccCCcEEEEEcCCCCCCCCC--CCcceEEEecCCcccccCCCccc
Q 012774 341 GLTESTAGVFRTVGPDE---------CRRWGSTGRLSAGLEAKIVDPETGDSLPP--GKEGELSIRGPTIMKGYVGEPEV 409 (456)
Q Consensus 341 G~tE~~~~~~~~~~~~~---------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~--g~~Gel~i~g~~~~~gy~~~~~~ 409 (456)
|+||++.+++....... ....+++|+|+++++++|+| +++++++. ++.|||+|+|+.++.||+++|+.
T Consensus 325 G~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~ 403 (541)
T 1v25_A 325 GLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEA 403 (541)
T ss_dssp ECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHH
T ss_pred cccccccceecccccccccccCccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhh
Confidence 99999877665322110 02347899999999999999 67888884 36899999999999999999999
Q ss_pred cccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 410 TSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 410 ~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|++.|..+|||+|||+|++|+||+++|.||+||+||++|++|+|.||
T Consensus 404 t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eI 450 (541)
T 1v25_A 404 TRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDL 450 (541)
T ss_dssp HHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHH
T ss_pred hhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHH
Confidence 99999879999999999999999999999999999999999999764
No 13
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=2.9e-68 Score=539.84 Aligned_cols=399 Identities=21% Similarity=0.240 Sum_probs=326.8
Q ss_pred CCCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 012774 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (456)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~ 116 (456)
..+++++|.++++++ |+++|+++. ++++||+||.++++++|+.|.+ .|+++||+|+|+++|++++++++|||+
T Consensus 74 ~~~l~~~l~~~a~~~----pd~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~ 146 (570)
T 4gr5_A 74 GACVHELFEAQAARA----PDAVALLHE--ADELTYGALNERANRLAHRLVG-LGVAPGTLVGVHLERGFDMVVALLAVL 146 (570)
T ss_dssp SCCHHHHHHHHHHHC----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHC----CCCeEEECC--CCcEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 369999999999999 999999998 8899999999999999999999 899999999999999999999999999
Q ss_pred HhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhccCCeEEEEcCCchhhhhcccCCCccccccCCCCCCEEE
Q 012774 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA 196 (456)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 196 (456)
++|++++|+++.++.+++.+++++++++++|+++.....+.. ...+.+....... ...........++++++
T Consensus 147 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~~d~a~ 218 (570)
T 4gr5_A 147 KAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTG--TTTLYVEDEAASD------APAGNLATGVGPEDVAC 218 (570)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSCS--SEEEECCC-------------CCCCCCCCCTTSEEE
T ss_pred HHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcccC--Ccceeeecccccc------ccccccCCCCCCCCeEE
Confidence 999999999999999999999999999999999766443322 1222221111000 00011223456789999
Q ss_pred EEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEec--CCCHHHHH
Q 012774 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ--RFDLKMML 274 (456)
Q Consensus 197 i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~--~~~~~~~~ 274 (456)
++|||||||.||+|+++|+++.+.... .... +..+++++++.+|++|..+...++.++..|+++++.+ .+++..++
T Consensus 219 i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~ 296 (570)
T 4gr5_A 219 VMFTSGSTGRPKGVMSPHRALTGTYLG-QDYA-GFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPLEIG 296 (570)
T ss_dssp EECCSSCCSSCCCEEEEHHHHHHHHSS-CCSS-CCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSCCHHHHH
T ss_pred EEECCcCCCCCeEEEEecHHHHHHHHh-hhhc-CCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCCccCCHHHHH
Confidence 999999999999999999999776544 3333 6788999999999998777778889999999999986 47999999
Q ss_pred HHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccccC
Q 012774 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354 (456)
Q Consensus 275 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~ 354 (456)
+.|+++++|++.++|+++..|.+... ..++++|.+++||++++++..+++.+.++++++++.||+||++.+++....
T Consensus 297 ~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~ 373 (570)
T 4gr5_A 297 ELVARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAV 373 (570)
T ss_dssp HHHHHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEEC
T ss_pred HHHHHcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeee
Confidence 99999999999999999999987542 347899999999999999999999999989999999999999877654322
Q ss_pred C--CCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCC--------Ceeeccc
Q 012774 355 P--DECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPD--------GWMRTGD 424 (456)
Q Consensus 355 ~--~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~--------g~~~TGD 424 (456)
. .......++|+|+++++++|+| +++++++.|+.|||+|+|++++.||+++++.|.+.|..+ |||+|||
T Consensus 374 ~~~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGD 452 (570)
T 4gr5_A 374 VAGDLSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGD 452 (570)
T ss_dssp CGGGTTSSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEE
T ss_pred cccccCCCccccceeeCCCEEEEEC-CCCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCC
Confidence 1 1223446799999999999999 779999999999999999999999999999999988543 7999999
Q ss_pred eEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 425 LCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 425 l~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+|++|+||+|+|.||+||+||++|++|+|.||
T Consensus 453 lg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eI 484 (570)
T 4gr5_A 453 LARRRADGVLEYVGRADDQVKIRGFRVEPGEV 484 (570)
T ss_dssp EEEECTTSCEEEEEC-----------------
T ss_pred eEEECCCCeEEEEcccCCEEEECcEEeCHHHH
Confidence 99999999999999999999999999999986
No 14
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=1.4e-67 Score=534.53 Aligned_cols=407 Identities=20% Similarity=0.285 Sum_probs=343.6
Q ss_pred CCHH-HHhhhcccCCCCCCCCCcEEEEC---CCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHH
Q 012774 38 ISAV-DYVSSLRATLPWRDDDTVALINS---VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113 (456)
Q Consensus 38 ~~~~-~~l~~~~~~~~~~~p~~~A~~~~---~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~l 113 (456)
+|+. +++.+.++++ |+++|+++. ..++++||+||.++++++|+.|++ .|+++||+|+|+++|++++++++|
T Consensus 55 ~n~~~~~l~~~a~~~----pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~-~Gv~~Gd~V~l~~~~~~e~~~~~l 129 (580)
T 3etc_A 55 FNFAYDVVDVYARDS----PEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVK-HGIGKGDYVMLTLKSRYDFWYCML 129 (580)
T ss_dssp CCHHHHTHHHHHHHC----TTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECTTCTHHHHHHH
T ss_pred chHHHHHHHHHHhhC----CCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHH
Confidence 5666 8999999999 999999863 124689999999999999999998 899999999999999999999999
Q ss_pred HHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchH--HHHh-------ccCCeEEEEcCC------chhhhhccc
Q 012774 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV--HKLA-------KLKHRTILIDSP------EFDSMTMSW 178 (456)
Q Consensus 114 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~-------~~~~~~~~~~~~------~~~~~~~~~ 178 (456)
||+++|++++|+++.++.+++.+++++++++++|++.+.. ..+. ......+.++.. ++.+.....
T Consensus 130 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (580)
T 3etc_A 130 GLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEES 209 (580)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCCTTCEEHHHHHHHS
T ss_pred HHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccccccccHHHHHhhC
Confidence 9999999999999999999999999999999999986543 3222 122344545432 122222221
Q ss_pred CCCcccc--ccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHH-HHHHH
Q 012774 179 NSKHELD--RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF-FCFRA 255 (456)
Q Consensus 179 ~~~~~~~--~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~-~~~~~ 255 (456)
......+ .....++++++++|||||||.||+|.++|.++...+....... ....++++++..|++|..++. .++.+
T Consensus 210 ~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (580)
T 3etc_A 210 SPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-NVEDDGLHYTVADSGWGKCVWGKLYGQ 288 (580)
T ss_dssp CSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-CCCTTCEEEECCCTTSTHHHHHTTHHH
T ss_pred CcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-CCCCCceEEEeCChHHHHHHHHHHHHH
Confidence 1111111 1246779999999999999999999999999888776655555 678899999999999988774 46788
Q ss_pred hHhcceEEEe--cCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCC
Q 012774 256 AALMETAVVM--QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPK 333 (456)
Q Consensus 256 l~~G~~~~~~--~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~ 333 (456)
+..|+++++. ..+++..+++.|+++++|+++++|+++..|.+. .....+++++|.+++|||++++++.++|.+.+ +
T Consensus 289 l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~-~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-g 366 (580)
T 3etc_A 289 WIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE-DLSHYNFSTLKYAVVAGEPLNPEVFNRFLEFT-G 366 (580)
T ss_dssp HHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS-CC---CCTTCCEEEECSSCCCHHHHHHHHHHH-S
T ss_pred HhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc-ccccCCCccceEEEEccCCCCHHHHHHHHHHh-C
Confidence 9999999887 578999999999999999999999999999886 34456789999999999999999999999987 8
Q ss_pred CceEeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEec-----CCcccccCCCcc
Q 012774 334 VVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRG-----PTIMKGYVGEPE 408 (456)
Q Consensus 334 ~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g-----~~~~~gy~~~~~ 408 (456)
+++++.||+||++..++.. .....+.+++|+|+|+++++|+| ++++++++|+.|||+|+| +.++.||+++|+
T Consensus 367 ~~i~~~YG~TE~~~~~~~~--~~~~~~~~~~G~p~~~~~v~ivd-~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~ 443 (580)
T 3etc_A 367 IKLMEGFGQTETVVTIATF--PWMEPKPGSIGKPTPGYKIELMD-RDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPE 443 (580)
T ss_dssp CCCEEEECCTTSSCCEECC--TTSCCCTTCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEECTTCCCTTCCCEETTCHH
T ss_pred CeEecccccccccceeecC--CCCCCCCCccccCCCCCEEEEEC-CCCCCCCCCCceEEEEecCCCCCCeeeccccCCHh
Confidence 9999999999998765543 22344678999999999999999 679999999999999997 789999999999
Q ss_pred ccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 409 VTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 409 ~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
.+.+.| .+|||+|||+|++|+||+|+|.||.||+||++|++|+|.||
T Consensus 444 ~t~~~f-~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eI 490 (580)
T 3etc_A 444 RTEETW-HDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEV 490 (580)
T ss_dssp HHHHHE-ETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHH
T ss_pred HHHhhc-CCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHH
Confidence 999999 58999999999999999999999999999999999999874
No 15
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=6.1e-68 Score=530.04 Aligned_cols=400 Identities=24% Similarity=0.322 Sum_probs=340.6
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
+|+.++|.++++++ |+++|+++...++++||+||.++++++|+.|++ .|+++||+|+++++|++++++++|||++
T Consensus 2 ~tl~~~l~~~a~~~----p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 76 (504)
T 1t5h_X 2 QTVNEMLRRAATRA----PDHCALAVPARGLRLTHAELRARVEAVAARLHA-DGLRPQQRVAVVAPNSADVVIAILALHR 76 (504)
T ss_dssp CCHHHHHHHHHHHC----TTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhC----CCceEEEEcCCCceeEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 58999999999999 999999987556899999999999999999999 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEE--ccchHHHH-hcc-CCeEEEEcCCchhhhhcccC---CCccccccCCC
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFA--TSSVVHKL-AKL-KHRTILIDSPEFDSMTMSWN---SKHELDRAKVC 190 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 190 (456)
+|++++|+++.++.+++.+++++++++++++ ++.....+ ... ..+++. ++++..... ...........
T Consensus 77 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 151 (504)
T 1t5h_X 77 LGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIF-----LGDLVRDGEPYSYGPPIEDPQRE 151 (504)
T ss_dssp HTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCCCCEEEE-----GGGTEETTEECCCSCCCCCCCCC
T ss_pred hCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccccceeEE-----ecchhhcCcccccCCccCCCCCC
Confidence 9999999999999999999999999999999 77665555 322 223221 223222110 00011113456
Q ss_pred CCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCC--CCCcEEEEecchhhHhhH-HHHHHHhHhcceEEEecC
Q 012774 191 QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKR--VSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQR 267 (456)
Q Consensus 191 ~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~ 267 (456)
++++++++|||||||.||+|+++|+++.+.+......+ +. .+.+++++.+|++|.+++ ..++.++..|+++++.+.
T Consensus 152 ~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~ 230 (504)
T 1t5h_X 152 PAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-GLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEE 230 (504)
T ss_dssp TTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-CCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSS
T ss_pred CCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-CCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCC
Confidence 78999999999999999999999999998887776666 45 788999999999999998 568899999999999999
Q ss_pred CCHHHHHHHHHHhcceeEEecHHHHHHHhcCCC--CCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCcccc
Q 012774 268 FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES 345 (456)
Q Consensus 268 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~ 345 (456)
+++..+++.|+++++|+++++|+++..|.+... ....+++++|.+++||+++++++.++|++.+ +..+++.||+||+
T Consensus 231 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~ 309 (504)
T 1t5h_X 231 FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNIYGTTEA 309 (504)
T ss_dssp CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHC-CSEEEEEEEETTT
T ss_pred CCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhc-Ccceeeeeccccc
Confidence 999999999999999999999999999987642 2445689999999999999999999999998 7899999999999
Q ss_pred ccccccccCCCCCCCCCccccccCCcEEEEEcCCCC---CCCCCCCcceEEEe-cCCcccccCCCccccccccCCCCeee
Q 012774 346 TAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETG---DSLPPGKEGELSIR-GPTIMKGYVGEPEVTSATLLPDGWMR 421 (456)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~---~~~~~g~~Gel~i~-g~~~~~gy~~~~~~~~~~~~~~g~~~ 421 (456)
+..... . ....+++|.|.++++++|+| +.+ ++++.|+.|||+|+ |+.++.||+++++.+.+.| .+|||+
T Consensus 310 ~~~~~~--~---~~~~~~~g~p~~~~~~~i~~-~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~ 382 (504)
T 1t5h_X 310 MNSLYM--R---QPKTGTEMAPGFFSEVRIVR-IGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYR 382 (504)
T ss_dssp EEEEEE--E---SCSSSSEEBCCTTCCEEEEC-TTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEE
T ss_pred cccccc--c---CCCCCccccCCCCCceeEEe-ccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhh-cCCccc
Confidence 432221 1 23458899999999999999 445 88999999999999 9999999999999999999 689999
Q ss_pred ccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 422 TGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 422 TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|||+|++|+||+++|.||.||+||++|++|+|.||
T Consensus 383 TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eI 417 (504)
T 1t5h_X 383 TSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEI 417 (504)
T ss_dssp EEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHH
T ss_pred cCcEEEECCCceEEEeCcccCEEEECCEEECHHHH
Confidence 99999999999999999999999999999999764
No 16
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=9.8e-68 Score=529.38 Aligned_cols=401 Identities=25% Similarity=0.361 Sum_probs=331.3
Q ss_pred CCCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 012774 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (456)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~ 116 (456)
++|+.++|.++++++ ||++|+++. ++++||+||.++++++|+.|++ .|+++||+|+++++|++++++++|||+
T Consensus 5 ~~tl~~~l~~~a~~~----pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 77 (509)
T 3ivr_A 5 DFTLADVYRRNAALF----PDRTAFMVD--GVRLTHRDYLARAERLASGLLR-DGVHTGDRVAILSQNCSEMIELIGAVA 77 (509)
T ss_dssp CCCHHHHHHHHHHHS----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHC----CCceEEEEC--CcEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 389999999999999 999999997 8899999999999999999998 899999999999999999999999999
Q ss_pred HhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHh----cc-CC-eEEEEcCC--chhhhhcccCCCccccccC
Q 012774 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLA----KL-KH-RTILIDSP--EFDSMTMSWNSKHELDRAK 188 (456)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~----~~-~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 188 (456)
++|++++|+++.++.+++.+++++++++++|++++....+. .. .. .++.++.. .+..+..... ........
T Consensus 78 ~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 156 (509)
T 3ivr_A 78 LIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSGPFAPFKDLAS-DTPFSAPE 156 (509)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCSSCEEGGGTCC-CSCCCCCC
T ss_pred HhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCcChhhHhhccC-CCCCCcCC
Confidence 99999999999999999999999999999999988765532 11 12 23333321 2222222111 11222345
Q ss_pred CCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEecCC
Q 012774 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRF 268 (456)
Q Consensus 189 ~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~ 268 (456)
..++++++++|||||||.||+|+++|+++.+.+......+ +..++|++++.+|++|.+++...+.++..|+..++...+
T Consensus 157 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~~~ 235 (509)
T 3ivr_A 157 FGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-RLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKF 235 (509)
T ss_dssp CCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSC
T ss_pred CCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-CCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEeccc
Confidence 6778999999999999999999999999999888887777 788999999999999999997777777777777777789
Q ss_pred CHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccc
Q 012774 269 DLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAG 348 (456)
Q Consensus 269 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~ 348 (456)
++..+++.|+++++|+++++|+++..+++.. ...+++++|.++.+|++ +..+.+.+.+|++++++.||+||++.+
T Consensus 236 ~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~ 310 (509)
T 3ivr_A 236 DPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGL 310 (509)
T ss_dssp CHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEE
T ss_pred CHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccc
Confidence 9999999999999999999999999998875 34567899999999987 888999999999999999999999887
Q ss_pred cccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEE
Q 012774 349 VFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYI 428 (456)
Q Consensus 349 ~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~ 428 (456)
++..... ....++|+|+++++++|+| ++++++++|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++
T Consensus 311 ~~~~~~~---~~~~~~G~p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~g~~~TGDl~~~ 385 (509)
T 3ivr_A 311 STFAPYR---DRPKSAGRPLFWRTVAVVD-AEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMGRF 385 (509)
T ss_dssp EEEEEGG---GSTTSCCEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHT-GGGSEEEEEEEEE
T ss_pred cccCccc---cCCCcccccCCCcEEEEEC-CCCCCCCCCCceEEEEecCCccccccCCHHHhHHHh-hcCCcccccEEEE
Confidence 6654322 1234599999999999999 679999999999999999999999999999999999 4899999999999
Q ss_pred ccCCcEEEeccc--ccceeeCCeeecCCCC
Q 012774 429 DEDGFLFIVDRL--KDLIKYKGYQVLPLLN 456 (456)
Q Consensus 429 ~~dg~l~~~GR~--~d~ik~~G~~v~p~e~ 456 (456)
|+||+++|.||. ||+||++|++|+|.|+
T Consensus 386 ~~dG~l~~~GR~d~~d~ik~~G~~v~p~ei 415 (509)
T 3ivr_A 386 DADGYLFYAGRAPEKELIKTGGENVYPAEV 415 (509)
T ss_dssp CTTSCEEEEEEC------------------
T ss_pred CCCceEEEeCCCCcceeEEECCEEECHHHH
Confidence 999999999999 9999999999999885
No 17
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=1.1e-67 Score=528.94 Aligned_cols=404 Identities=21% Similarity=0.278 Sum_probs=349.0
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
||+.++|.++++++ |+++|+++. ++++||+||.++++++|+.|.++.|.++|++|+++++|++++++++|||++
T Consensus 1 m~l~~~l~~~a~~~----p~~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~ 74 (511)
T 3e7w_A 1 MKLLHAIQTHAETY----PQTDAFRSQ--GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVK 74 (511)
T ss_dssp CCHHHHHHHHHHHS----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHC----CCCeEEEcC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHH
Confidence 68999999999999 999999997 889999999999999999998745888999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhccCCeEEEEcCCchhhhhcccCCCccccccCCCCCCEEEE
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAI 197 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 197 (456)
+|++++|+++.++.+++.+++++++++++|+++.............+ .+.++....... ........+++++++
T Consensus 75 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~a~i 148 (511)
T 3e7w_A 75 AGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQQIQTV-----SAEELLENEGGS-VSQDQWVKEHETFYI 148 (511)
T ss_dssp HTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCCCSSCEE-----EHHHHHTSCSCC-CCGGGSCCTTSEEEE
T ss_pred hCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhccccccee-----cHhhhhccccCC-ccccccCCCCCeEEE
Confidence 99999999999999999999999999999997543221111111121 122332221111 122334567899999
Q ss_pred EcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEecC---CCHHHHH
Q 012774 198 MYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKMML 274 (456)
Q Consensus 198 ~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~---~~~~~~~ 274 (456)
+|||||||.||+|+++|+++.+.+......+ ....++++++.+|++|..++..++.++..|+++++.+. +++..++
T Consensus 149 ~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~ 227 (511)
T 3e7w_A 149 IYTSGSTGNPKGVQISAANLQSFTDWICADF-PVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLF 227 (511)
T ss_dssp EEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-TTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHH
T ss_pred EECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-CCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHH
Confidence 9999999999999999999999888877777 67889999999999999999889999999999999875 6899999
Q ss_pred HHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccccC
Q 012774 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354 (456)
Q Consensus 275 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~ 354 (456)
+.++++++|++.++|+++..++.........++++|.+++||+++++++.+++++.++++++++.||+||++..++....
T Consensus 228 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~ 307 (511)
T 3e7w_A 228 EELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEI 307 (511)
T ss_dssp HHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEE
T ss_pred HHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEec
Confidence 99999999999999999999998877667778999999999999999999999999999999999999999877664322
Q ss_pred CC---CCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCC-CC--eeeccceEEE
Q 012774 355 PD---ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP-DG--WMRTGDLCYI 428 (456)
Q Consensus 355 ~~---~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~-~g--~~~TGDl~~~ 428 (456)
.. ......++|+|+++++++|+| ++++++++|+.|||+|+|+.++.||+++++.+++.|.. +| ||+|||+|++
T Consensus 308 ~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~ 386 (511)
T 3e7w_A 308 TNDVISRSESLPVGFAKPDMNIFIMD-EEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI 386 (511)
T ss_dssp CHHHHTTCSSCCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE
T ss_pred cccccccCCcCCCcceeCCCEEEEEC-CCCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc
Confidence 11 123456799999999999999 67999999999999999999999999999999998842 23 7999999999
Q ss_pred ccCCcEEEecccccceeeCCeeecCCCC
Q 012774 429 DEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 429 ~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+||++++.||.||+||++|++|+|.|+
T Consensus 387 -~dG~l~~~GR~~d~ik~~G~~v~p~eI 413 (511)
T 3e7w_A 387 -QDGQIFCQGRLDFQIKLHGYRMELEEI 413 (511)
T ss_dssp -ETTEEEEEEESSSEEEETTEEEEHHHH
T ss_pred -cCCeEEEEccccCEEEECCEEeCHHHH
Confidence 699999999999999999999999764
No 18
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=3.4e-67 Score=527.93 Aligned_cols=403 Identities=22% Similarity=0.297 Sum_probs=334.4
Q ss_pred CC-HHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 012774 38 IS-AVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (456)
Q Consensus 38 ~~-~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~ 116 (456)
+| +.+++.+.++ + |+++|+++. ++++||+||.++++++|+.|++ .|+++||+|+++++|++++++++|||+
T Consensus 23 ~~~~~~~l~~~~~-~----p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~ 94 (529)
T 2v7b_A 23 FNFAAYLFRLNET-R----AGKTAYIDD--TGSTTYGELEERARRFASALRT-LGVHPEERILLVMLDTVALPVAFLGAL 94 (529)
T ss_dssp CCHHHHHHHHTGG-G----TTSEEEECS--SCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSTHHHHHHHHHH
T ss_pred eeHHHHHHHhhhc-c----CCceEEEeC--CCCccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHH
Confidence 55 7888888888 8 999999987 7899999999999999999998 899999999999999999999999999
Q ss_pred HhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc-------CCeEEEEcCC--------chhhhhcccCCC
Q 012774 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-------KHRTILIDSP--------EFDSMTMSWNSK 181 (456)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-------~~~~~~~~~~--------~~~~~~~~~~~~ 181 (456)
++|++++|+++.++.+++.+++++++++++|+++.....+... ...+++.+.. .++++......
T Consensus 95 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 173 (529)
T 2v7b_A 95 YAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAP- 173 (529)
T ss_dssp HHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------CCCBHHHHHHTSCC-
T ss_pred HcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccccccccchhhhhccCCC-
Confidence 9999999999999999999999999999999998776554321 1233333321 23333321111
Q ss_pred ccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHH-HHHHHHhccCCCCCCCCcEEEEecchhhHhhHH-HHHHHhHhc
Q 012774 182 HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNL-TAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF-FCFRAAALM 259 (456)
Q Consensus 182 ~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~-~~~~~l~~G 259 (456)
........++++++++|||||||.||+|+++|+++ ..........+ +..+++++++.+|++|.+++. .++.++..|
T Consensus 174 -~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G 251 (529)
T 2v7b_A 174 -AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-GIAENDVVFSAAKLFFAYGLGNGLTFPLSVG 251 (529)
T ss_dssp -CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-CCCTTCEEEESSCTTSHHHHHHHTHHHHHHT
T ss_pred -cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-CCCCCcEEEEeecHHHHHHHHHHHHHHHhcC
Confidence 11223456789999999999999999999999999 55555544444 678899999999999999984 467889999
Q ss_pred ceEEEe-cCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEe
Q 012774 260 ETAVVM-QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ 338 (456)
Q Consensus 260 ~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~ 338 (456)
+++++. +.+++..+++.|+++++|+++++|+++..+++..........++|.+++||+++++++.+++++.+ ++++++
T Consensus 252 ~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~-g~~i~~ 330 (529)
T 2v7b_A 252 ATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHF-GCEILD 330 (529)
T ss_dssp CEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHH-SCCEEE
T ss_pred cEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHh-CCceee
Confidence 999987 678999999999999999999999999999886544333124899999999999999999999988 899999
Q ss_pred ccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCC
Q 012774 339 AYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDG 418 (456)
Q Consensus 339 ~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g 418 (456)
.||+||++.+++.... .....+++|+|+++++++|+| +++++++.|+.|||+|+|+.++.||+++++.+.+.| .++
T Consensus 331 ~YG~TE~~~~~~~~~~--~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~~ 406 (529)
T 2v7b_A 331 GIGSTEMLHIFLSNRA--GAVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATF-LGE 406 (529)
T ss_dssp EEECTTTSSEEEECCT--TCCCTTSCCEECTTCEEEEEC-TTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHE-ETT
T ss_pred eEchhhcCceeecccc--CCCccCCcccCCCCCEEEEEC-CCCCCCCCCCccEEEEecCCcccccCCChHHHHHhh-hcC
Confidence 9999999766554322 224568999999999999999 789999999999999999999999999999999999 489
Q ss_pred eeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 419 WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 419 ~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
||+|||+|++|+||+++|.||.||+||++|++|+|.|+
T Consensus 407 ~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eI 444 (529)
T 2v7b_A 407 WIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEV 444 (529)
T ss_dssp EEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHH
T ss_pred CcccCceEEECCCccEEEeCccCCeEEECCEEECHHHH
Confidence 99999999999999999999999999999999999764
No 19
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=2.1e-67 Score=540.39 Aligned_cols=410 Identities=19% Similarity=0.222 Sum_probs=342.4
Q ss_pred CC-HHHHhhhcccCCCCCCCCCcEEEECC----CCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHH
Q 012774 38 IS-AVDYVSSLRATLPWRDDDTVALINSV----TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILY 112 (456)
Q Consensus 38 ~~-~~~~l~~~~~~~~~~~p~~~A~~~~~----~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~ 112 (456)
+| ++++|.++++++ |+++|+++.. .++++||+||.++++++|+.|++ +|+++||+|+|+++|++++++++
T Consensus 75 ~n~~~~~l~~~a~~~----pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~-~Gv~~Gd~V~i~~~~~~e~vva~ 149 (652)
T 1pg4_A 75 LNLAANCLDRHLQEN----GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLD-LGIKKGDVVAIYMPMVPEAAVAM 149 (652)
T ss_dssp ECHHHHHTGGGHHHH----TTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHH-HTCCTTCEEEEECCSSHHHHHHH
T ss_pred hhHHHHHHHHHhccC----CCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHH
Confidence 44 556777788888 9999999731 34789999999999999999998 89999999999999999999999
Q ss_pred HHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchH------------HH-Hhcc---C-CeEEEEcCC------
Q 012774 113 FSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV------------HK-LAKL---K-HRTILIDSP------ 169 (456)
Q Consensus 113 la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~------------~~-~~~~---~-~~~~~~~~~------ 169 (456)
|||+++|++++|+++.++.+++.+++++++++++|+++... .. +... . ..+++++..
T Consensus 150 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~ 229 (652)
T 1pg4_A 150 LACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW 229 (652)
T ss_dssp HHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCC
T ss_pred HHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccc
Confidence 99999999999999999999999999999999999986532 11 1111 1 234444321
Q ss_pred ------chhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHH-hccCCCCCCCCcEEEEecc
Q 012774 170 ------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVAS-SFASSPKRVSPAVMLFTMP 242 (456)
Q Consensus 170 ------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~-~~~~~~~~~~~~~~~~~~p 242 (456)
.|.++...... ........++++++++|||||||.||||+++|+++...... ....+ ...++|++++.+|
T Consensus 230 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-~~~~~d~~l~~~~ 306 (652)
T 1pg4_A 230 QEGRDLWWRDLIEKASP--EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-DYHPGDIYWCTAD 306 (652)
T ss_dssp CBTTEEEHHHHHTTSCS--CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-TCCTTCEEEECSC
T ss_pred cCCCceeHHHHHhhcCC--CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc-CCCCCCEEEEccC
Confidence 13333322111 11223345789999999999999999999999998776643 33334 6788999999999
Q ss_pred hhhHhhH-HHHHHHhHhcceEEEecC----CCHHHHHHHHHHhcceeEEecHHHHHHHhcCCC--CCCCCCCCceEEEec
Q 012774 243 YFHIYGL-FFCFRAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVACG 315 (456)
Q Consensus 243 ~~~~~g~-~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~v~~g 315 (456)
++|..++ ..++.++..|+++++.+. +++..+++.|+++++|+++++|+++..|++... ....+++++|.+++|
T Consensus 307 ~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~g 386 (652)
T 1pg4_A 307 VGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSV 386 (652)
T ss_dssp TTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEE
T ss_pred CeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEe
Confidence 9999998 668899999999999874 589999999999999999999999999988654 344578999999999
Q ss_pred CCCCCHHHHHHHHHhCC--CCceEeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEE
Q 012774 316 AAPLGKDTIMAFASKFP--KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELS 393 (456)
Q Consensus 316 G~~~~~~~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~ 393 (456)
||++++++++++.+.++ ++++++.||+||++.+++.........+.+++|+|++|++++|+| +++++++.|+.|||+
T Consensus 387 Ge~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~~GEl~ 465 (652)
T 1pg4_A 387 GEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLV 465 (652)
T ss_dssp SSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEEEE
T ss_pred cCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCCcCCCceEEEE
Confidence 99999999999999883 289999999999987666533222334668999999999999999 679999999999999
Q ss_pred Eec--CCcccccCCCccccccccC--CCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 394 IRG--PTIMKGYVGEPEVTSATLL--PDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 394 i~g--~~~~~gy~~~~~~~~~~~~--~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|+| |+++.||+++++.+.+.+. .+|||+|||+|++|+||+|+|+||+||+||++|+||+|.||
T Consensus 466 i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eI 532 (652)
T 1pg4_A 466 ITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEI 532 (652)
T ss_dssp ECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHH
T ss_pred EccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHH
Confidence 999 7899999999998877763 37899999999999999999999999999999999999874
No 20
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=3e-67 Score=530.64 Aligned_cols=395 Identities=19% Similarity=0.234 Sum_probs=337.4
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
.++.++|.+.++++ |+++|+++. ++++||+||.++++++|+.|.+ .|+++||+|+++++|++++++++|||++
T Consensus 39 ~~l~~~l~~~a~~~----p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 111 (563)
T 1amu_A 39 KTIHQLFEEQVSKR----PNNVAIVCE--NEQLTYHELNVKANQLARIFIE-KGIGKDTLVGIMMEKSIDLFIGILAVLK 111 (563)
T ss_dssp CCHHHHHHHHHHHC----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHC----CCCeEEEeC--CceecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 68999999999999 999999987 7899999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhccC--CeEEEEcCCchhhhhcccCCCccccccCCCCCCEE
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK--HRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVA 195 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 195 (456)
+|++++|+++.++.+++.+++++++++++|++++....+.... ..+..++...+.. .. . ........+++++
T Consensus 112 ~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~-~~~~~~~~~~d~a 185 (563)
T 1amu_A 112 AGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEEDTIKI---RE--G-TNLHVPSKSTDLA 185 (563)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEECCCSTTTT---SC--C-SCCCCCCCTTSEE
T ss_pred hCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccccCceeeecchhhcc---cc--C-ccCCCCCCCCCeE
Confidence 9999999999999999999999999999999988776655432 2233332211110 00 0 1112234678999
Q ss_pred EEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEecC---CCHHH
Q 012774 196 AIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKM 272 (456)
Q Consensus 196 ~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~---~~~~~ 272 (456)
+++|||||||.||+|+++|+++.+........+ +..++|++++.+|++|..++..++.++..|+++++.+. +++..
T Consensus 186 ~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~ 264 (563)
T 1amu_A 186 YVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-NVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVK 264 (563)
T ss_dssp EEEEEC-----CEEEEEESHHHHHHHHHHHHTS-CCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHH
T ss_pred EEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-CCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCHHH
Confidence 999999999999999999999998887776666 67889999999999999988888899999999999875 68999
Q ss_pred HHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccc
Q 012774 273 MLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT 352 (456)
Q Consensus 273 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~ 352 (456)
+++.++++++|++.++|+++..+... .++++|.+++||+++++++.++|.+ .+++++.||+||++.+++..
T Consensus 265 ~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~---~~~~~~~YG~TE~~~~~~~~ 335 (563)
T 1amu_A 265 FEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKE---KVTYINAYGPTETTICATTW 335 (563)
T ss_dssp HHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTT---TSEEEEEECCGGGSSCSEEE
T ss_pred HHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHh---CCeEEEEECcCHHhHhheee
Confidence 99999999999999999999877542 4678999999999999999999876 47899999999998766543
Q ss_pred cCCC-CCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCC------CCeeeccce
Q 012774 353 VGPD-ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP------DGWMRTGDL 425 (456)
Q Consensus 353 ~~~~-~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~------~g~~~TGDl 425 (456)
.... ......++|+|+++++++|+| +++++++.|+.|||+|+|++++.||+++|+.|.+.|.. ++||+|||+
T Consensus 336 ~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDl 414 (563)
T 1amu_A 336 VATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQ 414 (563)
T ss_dssp ECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEE
T ss_pred ecccccCCCCCcccceeCCCEEEEEC-CCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCE
Confidence 3222 223457899999999999999 78999999999999999999999999999999988853 359999999
Q ss_pred EEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 426 CYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 426 ~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|++|+||+|+|.||+||+||++|++|+|.||
T Consensus 415 g~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eI 445 (563)
T 1amu_A 415 ARWLSDGNIEYLGRIDNQVKIRGHRVELEEV 445 (563)
T ss_dssp EEECTTSCEEEEEEGGGEEEETTEEEEHHHH
T ss_pred EEEcCCCeEEEeccccCEEEECCEEeCHHHH
Confidence 9999999999999999999999999999764
No 21
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=1.6e-67 Score=539.02 Aligned_cols=404 Identities=23% Similarity=0.310 Sum_probs=345.5
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
+++.+++.++++ ||++|+++. ++++||+||.++++++|+.|++ .|+++||+|+++++|++++++++|||++
T Consensus 27 ~~l~~~~~~~a~------pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~gd~V~l~~~~s~~~vva~lA~l~ 97 (617)
T 3rg2_A 27 LPLTDILTRHAA------SDSIAVIDG--ERQLSYRELNQAADNLACSLRR-QGIKPGETALVQLGNVAELYITFFALLK 97 (617)
T ss_dssp CCTTHHHHTTTT------CCSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHhhC------CCCeEEecC--CceEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCcHHHHHHHHHHHh
Confidence 799999998876 799999998 8899999999999999999999 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchH--------HHHh--ccCCeEE-EEcCCc---hhhhhcccCCCcc
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV--------HKLA--KLKHRTI-LIDSPE---FDSMTMSWNSKHE 183 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--------~~~~--~~~~~~~-~~~~~~---~~~~~~~~~~~~~ 183 (456)
+|++++|+++..+.+++.++++++++++++++.... ..+. ......+ ..+... +........ ..
T Consensus 98 aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 175 (617)
T 3rg2_A 98 LGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQDAINHPA--ED 175 (617)
T ss_dssp HTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCSTTBHHHHHHSCC--SS
T ss_pred cCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccccchhhhhcccc--cc
Confidence 999999999999999999999999999999986543 1111 1122222 233222 222222111 11
Q ss_pred ccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHH--HHHHHhHhcce
Q 012774 184 LDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF--FCFRAAALMET 261 (456)
Q Consensus 184 ~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~--~~~~~l~~G~~ 261 (456)
.......++++++++|||||||.||+|+++|+++.+.+......+ ...+++++++.+|++|.+++. .++.++..|++
T Consensus 176 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~ 254 (617)
T 3rg2_A 176 FTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGT 254 (617)
T ss_dssp CCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-TCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCE
T ss_pred cCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-CCCCcceEEEeccchhhhhhhHHHHHHHHHcCCE
Confidence 222345678999999999999999999999999999888877776 688999999999999999884 58899999999
Q ss_pred EEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCC--CCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEec
Q 012774 262 AVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA 339 (456)
Q Consensus 262 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~ 339 (456)
+++.+.+++..+++.++++++|++.++|+++..+++.... ....++++|.+++|||++++++.++|.+.+ ++++++.
T Consensus 255 ~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-~~~~~~~ 333 (617)
T 3rg2_A 255 VVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI-GCQLQQV 333 (617)
T ss_dssp EEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHT-CSEEEEE
T ss_pred EEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHh-CCcEEEE
Confidence 9999989999999999999999999999999998775332 233689999999999999999999999998 8999999
Q ss_pred cCccccccccccccCCCCCCCCCcccccc-CCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCC
Q 012774 340 YGLTESTAGVFRTVGPDECRRWGSTGRLS-AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDG 418 (456)
Q Consensus 340 yG~tE~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g 418 (456)
||+||++..+.... ........++|+|+ ++.+++|+| +++++++.|+.|||+|+|+++++||+++++.|.+.|..++
T Consensus 334 YG~tE~~~~~~~~~-~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~ 411 (617)
T 3rg2_A 334 FGMAEGLVNYTRLD-DSAEKIIHTQGYPMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANG 411 (617)
T ss_dssp EEETTEEEEECCTT-SCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTS
T ss_pred eccCcceeecccCC-CcccccccCCCccCCCCceEEEEC-CCCCCCCCCCceEEEecCccccchhcCChhhhhhccCCCC
Confidence 99999986544321 11112235789997 788999999 7899999999999999999999999999999999999999
Q ss_pred eeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 419 WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 419 ~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
||+|||+|++++||+|+|+||.||+||++|+||+|.||
T Consensus 412 ~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eI 449 (617)
T 3rg2_A 412 FYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEI 449 (617)
T ss_dssp CEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHH
T ss_pred ceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHH
Confidence 99999999999999999999999999999999999764
No 22
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=1.4e-67 Score=529.92 Aligned_cols=405 Identities=21% Similarity=0.296 Sum_probs=340.5
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
.|+.++|.+.++++ |+++|+++. ++++||+||.++++++|+.|.+ .|+++||+|+++++|++++++++|||++
T Consensus 4 ~~l~~~l~~~a~~~----p~~~a~~~~--~~~~Ty~el~~~~~~lA~~L~~-~g~~~gd~V~i~~~n~~~~~~~~lA~~~ 76 (521)
T 3l8c_A 4 KDMIDSIEQFAQTQ----ADFPVYDCL--GERRTYGQLKRDSDSIAAFIDS-LALLAKSPVLVFGAQTYDMLATFVALTK 76 (521)
T ss_dssp CCHHHHHHHHHHHS----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TCCCTTCCEEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC----CCCcceecC--CCeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 58999999999999 999999998 8899999999999999999999 9999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhccCCeEEEEcCCchhhhhcccCCCccccccCCCCCCEEEE
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAI 197 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 197 (456)
+|++++|+++.++.+++.+++++++++++|++++....+. ....+.+. ......... ..........+++++++
T Consensus 77 ~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~--~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~d~a~i 150 (521)
T 3l8c_A 77 SGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE--GISLVSLS--EIESAKLAE--MPYERTHSVKGDDNYYI 150 (521)
T ss_dssp TTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT--TSEEEEHH--HHHHHHHHT--CCCCCSSCCCTTSEEEE
T ss_pred hCCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccc--cCcccchh--hhhhccccc--CCcccCCCCCCCCcEEE
Confidence 9999999999999999999999999999999876533222 11222111 111111111 00112234567899999
Q ss_pred EcCCCCCCCCchhcccHHHHHHHHHHhccCC-CCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEecCC---CHHHH
Q 012774 198 MYSSGTTGRVKGVMLTHRNLTAAVASSFASS-PKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRF---DLKMM 273 (456)
Q Consensus 198 ~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~---~~~~~ 273 (456)
+|||||||.||+|+++|+++.+......... ......+++++..|++|..++..++.++..|+++++.+.. ++..+
T Consensus 151 ~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~ 230 (521)
T 3l8c_A 151 IFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQL 230 (521)
T ss_dssp EECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCHHHH
T ss_pred EEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCHHHH
Confidence 9999999999999999999998776655441 1567889999999999999888888999999999998764 89999
Q ss_pred HHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCcccccccccccc
Q 012774 274 LKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV 353 (456)
Q Consensus 274 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~ 353 (456)
++.+.++++|++.++|+++..+..........++++|.+++||+++++++.+++.+.++++++++.||+||++..++...
T Consensus 231 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~ 310 (521)
T 3l8c_A 231 FTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIE 310 (521)
T ss_dssp HHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEE
T ss_pred HHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceee
Confidence 99999999999999999999998877666677899999999999999999999999999999999999999987765432
Q ss_pred CCC---CCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCcccccccc---CCCCeeeccceEE
Q 012774 354 GPD---ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATL---LPDGWMRTGDLCY 427 (456)
Q Consensus 354 ~~~---~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~---~~~g~~~TGDl~~ 427 (456)
... ......++|+|+++++++|+| ++++++++|+.|||+|+|++++.||+++++.+++.| +.+|||+|||+|+
T Consensus 311 ~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~ 389 (521)
T 3l8c_A 311 ITREMVDNYTRLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGS 389 (521)
T ss_dssp ECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEE
T ss_pred cccccccCCCccccccccCCCEEEEEC-CCcCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEE
Confidence 111 122456899999999999999 779999999999999999999999999999999987 4568999999999
Q ss_pred EccCCcEEEecccccceeeCCeeecCCCC
Q 012774 428 IDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 428 ~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+|+||+++|.||.||+||++|++|+|.|+
T Consensus 390 ~d~dG~l~~~GR~~d~i~~~G~~v~p~eI 418 (521)
T 3l8c_A 390 LTEDNILLYGGRLDFQIKYAGYRIELEDV 418 (521)
T ss_dssp ECSSSCEEEEEEGGGBCC-----CBHHHH
T ss_pred EeCCCeEEEeCcccceEeECCEEeCHHHH
Confidence 99999999999999999999999999764
No 23
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=1.7e-66 Score=525.89 Aligned_cols=403 Identities=20% Similarity=0.293 Sum_probs=341.3
Q ss_pred CC-HHHHhhhcccC-----CCCCCCCCcEEEECC---CCceecHHHHHHHHHHHHHHhHhhc-CCCCCCEEEEEcCCCCc
Q 012774 38 IS-AVDYVSSLRAT-----LPWRDDDTVALINSV---TGLRVSFSEFTRRTNSLASYLQNVT-RLSKNDTAFVLSTNSIE 107 (456)
Q Consensus 38 ~~-~~~~l~~~~~~-----~~~~~p~~~A~~~~~---~~~~~Ty~eL~~~~~~~a~~L~~~~-gi~~gd~V~l~~~~~~~ 107 (456)
++ +.+++.+.+++ + |+++|+++.+ .++++||+||.++++++|+.|.+ . |+++||+|+|+++|+++
T Consensus 37 ~~~~~~~l~~~a~~~~a~~~----p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~-~~Gv~~gd~V~i~~~n~~e 111 (570)
T 3c5e_A 37 FNFASDVLDHWADMEKAGKR----PPSPALWWVNGKGKELMWNFRELSENSQQAANVLSG-ACGLQRGDRVAVVLPRVPE 111 (570)
T ss_dssp CCHHHHTHHHHHHHHHTTSS----CCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHT-TTCCCTTCEEEEECCSCHH
T ss_pred ccHHHHHHHHHHhhccccCC----CCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHH-ccCCCCCCEEEEEcCCCHH
Confidence 44 46788888777 8 9999998732 24789999999999999999998 6 99999999999999999
Q ss_pred HHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhc----c-CC-eEEEEcCC------chhhhh
Q 012774 108 IPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK----L-KH-RTILIDSP------EFDSMT 175 (456)
Q Consensus 108 ~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~----~-~~-~~~~~~~~------~~~~~~ 175 (456)
+++++|||+++|++++|+++.++.+++.+++++++++++|++++....+.. . .. .++.++.. .++++.
T Consensus 112 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (570)
T 3c5e_A 112 WWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLL 191 (570)
T ss_dssp HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCCTTSEEHHHHH
T ss_pred HHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCccccccHHHHh
Confidence 999999999999999999999999999999999999999999887665532 1 12 23444431 233332
Q ss_pred cccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHH--HHHHhccCCCCCCCCcEEEEecchhhHhhHH-HH
Q 012774 176 MSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA--AVASSFASSPKRVSPAVMLFTMPYFHIYGLF-FC 252 (456)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~-~~ 252 (456)
..... ........++++++++|||||||.||+|+++|+ ++. ..... ..+ +...+|++++.+|++|..++. .+
T Consensus 192 ~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~-~~~~~d~~~~~~p~~~~~~~~~~~ 266 (570)
T 3c5e_A 192 NEAST--THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT-GLQASDIMWTISDTGWILNILCSL 266 (570)
T ss_dssp HHSCS--CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-SCCTTCEEEECCCTTSHHHHHHTT
T ss_pred hcccc--cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-CCCCCceEEEcCchHHHHHHHHHH
Confidence 22111 111233567899999999999999999999999 444 33333 444 678899999999999999985 67
Q ss_pred HHHhHhcceEEEec--CCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHh
Q 012774 253 FRAAALMETAVVMQ--RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASK 330 (456)
Q Consensus 253 ~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~ 330 (456)
+.++..|+++++.+ .+++..+++.|+++++|+++++|+++..|.+.. ....+++++|.+++||+++++++.++|++.
T Consensus 267 ~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~ 345 (570)
T 3c5e_A 267 MEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPHLQNCVTVGESLLPETLENWRAQ 345 (570)
T ss_dssp HHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTTCCEEEEESSCCCHHHHHHHHHH
T ss_pred HHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccccccccceEEEEcCCcCCHHHHHHHHHH
Confidence 88999999999986 689999999999999999999999999998863 334568899999999999999999999998
Q ss_pred CCCCceEeccCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEe-----cCCcccccCC
Q 012774 331 FPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIR-----GPTIMKGYVG 405 (456)
Q Consensus 331 ~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~-----g~~~~~gy~~ 405 (456)
+ ++++++.||+||++..++.. .......+++|+|+++++++|+| +++++++.|+.|||+|+ |++++.||++
T Consensus 346 ~-g~~i~~~YG~TE~~~~~~~~--~~~~~~~~~vG~p~~~~~v~i~d-~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~ 421 (570)
T 3c5e_A 346 T-GLDIRESYGQTETGLTCMVS--KTMKIKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVD 421 (570)
T ss_dssp H-SCCCEEEEEETTTEEEEECC--TTSCCCTTCCCEECTTCCEEEEC-TTSCBCCTTCCEEEEEECSSBCCTTCCCEETT
T ss_pred h-CCchhhccchhhcccceecC--cccccCCCcccccCCCceEEEEC-CCCCCCCCCCCCeeEEeccCCCCchhhccccC
Confidence 8 89999999999998665442 22234568999999999999999 67999999999999999 9999999999
Q ss_pred CccccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 406 EPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 406 ~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+++.+.+.| .++||+|||+|++|+||+|+|.||.||+||++|++|+|.||
T Consensus 422 ~~~~t~~~f-~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eI 471 (570)
T 3c5e_A 422 NPDKTAANI-RGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEV 471 (570)
T ss_dssp CHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHH
T ss_pred ChhHhhhhh-cCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHH
Confidence 999999999 58999999999999999999999999999999999999764
No 24
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=1.6e-66 Score=534.00 Aligned_cols=414 Identities=18% Similarity=0.258 Sum_probs=342.5
Q ss_pred CCCCC-HHHHhhhcccCCCCCCCCCcEEEEC----CCCceecHHHHHHHHHHHHHHhH-hhcCCCCCCEEEEEcCCCCcH
Q 012774 35 DAPIS-AVDYVSSLRATLPWRDDDTVALINS----VTGLRVSFSEFTRRTNSLASYLQ-NVTRLSKNDTAFVLSTNSIEI 108 (456)
Q Consensus 35 ~~~~~-~~~~l~~~~~~~~~~~p~~~A~~~~----~~~~~~Ty~eL~~~~~~~a~~L~-~~~gi~~gd~V~l~~~~~~~~ 108 (456)
++.+| ++++|.++++++ |+++|+++. ..++++||+||.++++++|+.|+ + +|+++||+|+|+++|++++
T Consensus 78 ~~~~n~~~~~l~~~a~~~----pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~-~Gv~~Gd~V~i~~~~~~e~ 152 (663)
T 1ry2_A 78 NGQLNACYNCVDRHALKT----PNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYS-MGVRKGDTVAVYMPMVPEA 152 (663)
T ss_dssp TCEECHHHHHTHHHHTTC----TTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHT-SCCCTTCEEEECCCSSHHH
T ss_pred CCCccHHHHHHHHHhccC----CCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCCHHH
Confidence 33344 456776778888 999999973 23578999999999999999999 7 8999999999999999999
Q ss_pred HHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchH---------HHHh----cc-C-CeEEEEcCC----
Q 012774 109 PILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV---------HKLA----KL-K-HRTILIDSP---- 169 (456)
Q Consensus 109 ~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~----~~-~-~~~~~~~~~---- 169 (456)
++++|||+++|++++|+++.++.+++.+++++++++++|+++... ..+. .. . ..+++++..
T Consensus 153 v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~ 232 (663)
T 1ry2_A 153 IITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPS 232 (663)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSS
T ss_pred HHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCc
Confidence 999999999999999999999999999999999999999986542 1111 11 1 234444321
Q ss_pred ---------chhhhhcccCCCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHh-ccCCCCCCCCcEEEE
Q 012774 170 ---------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASS-FASSPKRVSPAVMLF 239 (456)
Q Consensus 170 ---------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~-~~~~~~~~~~~~~~~ 239 (456)
.|.++...... ........++++++++|||||||.||||+++|+++....... ...+ ...++|++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-~~~~~d~~~~ 309 (663)
T 1ry2_A 233 VAFHAPRDLDWATEKKKYKT--YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-DTHQEDVFFT 309 (663)
T ss_dssp CCCCSSSEEEHHHHHTTSCS--CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-CCCSSCEEEE
T ss_pred cccCCCccccHHHHHhhcCC--CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc-CCCCCcEEEE
Confidence 12232221110 112233467899999999999999999999999987666433 3334 6788999999
Q ss_pred ecchhhHhhH-HHHHHHhHhcceEEEecC----CCHHHHHHHHHHhcceeEEecHHHHHHHhcCCC--CCCCCCCCceEE
Q 012774 240 TMPYFHIYGL-FFCFRAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETV 312 (456)
Q Consensus 240 ~~p~~~~~g~-~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~v 312 (456)
.+|++|+.+. ..++.++..|+++++.+. +++..+++.|+++++|+++++|++++.|.+... ....+++++|.+
T Consensus 310 ~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i 389 (663)
T 1ry2_A 310 AGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCL 389 (663)
T ss_dssp CSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEE
T ss_pred cCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEE
Confidence 9999999998 667899999999999864 589999999999999999999999999988654 234578999999
Q ss_pred EecCCCCCHHHHHHHHHhCC--CCceEeccCccccccccccccC-CCCCCCCCccccccCCcEEEEEcCCCCCCCCC-CC
Q 012774 313 ACGAAPLGKDTIMAFASKFP--KVVLVQAYGLTESTAGVFRTVG-PDECRRWGSTGRLSAGLEAKIVDPETGDSLPP-GK 388 (456)
Q Consensus 313 ~~gG~~~~~~~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~-~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~-g~ 388 (456)
++|||++++++++++.+.++ ++++++.||+||++..++.... .....+.+++|+|++|++++|+|++++++++. |+
T Consensus 390 ~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~ 469 (663)
T 1ry2_A 390 GSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHA 469 (663)
T ss_dssp EECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSC
T ss_pred EEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCc
Confidence 99999999999999999883 3899999999999876655322 12334678999999999999999548999988 99
Q ss_pred cceEEEec--CCcccccCCCccccccccCC--CCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 389 EGELSIRG--PTIMKGYVGEPEVTSATLLP--DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 389 ~Gel~i~g--~~~~~gy~~~~~~~~~~~~~--~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
.|||+|+| |+++.||+++++.+.+.+.. +|||+|||+|++|+||+++|+||+||+||++|+||+|.||
T Consensus 470 ~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eI 541 (663)
T 1ry2_A 470 EGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEI 541 (663)
T ss_dssp EEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHH
T ss_pred ceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHH
Confidence 99999999 58999999999988887643 7899999999999999999999999999999999999874
No 25
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=3.8e-66 Score=517.10 Aligned_cols=395 Identities=23% Similarity=0.317 Sum_probs=329.9
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
||+.++|.++++++ |+++|+++. ++++||+||.++++++|+.|++ . +||+|+++++|++++++++|||++
T Consensus 1 mtl~~~l~~~a~~~----pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~---~gd~V~i~~~n~~e~~~~~lA~~~ 70 (501)
T 3ipl_A 1 MSLDFWLYKQAQQN----GHHIAITDG--QESYTYQNLYCEASLLAKRLKA-Y---QQSRVGLYIDNSIQSIILIHACWL 70 (501)
T ss_dssp --CCCHHHHHHHHH----TTSEEEECS--SCEEEHHHHHHHHHHHHHHHHT-T---CCSEEEEECCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhc----CCceEEEeC--CcEEEHHHHHHHHHHHHHHHHH-c---CCCEEEEEcCCCHHHHHHHHHHHH
Confidence 57889999999999 999999988 7899999999999999999998 4 899999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc----CCeEEEE----cC-------Cchhhhh---cccC
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----KHRTILI----DS-------PEFDSMT---MSWN 179 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~----~~-------~~~~~~~---~~~~ 179 (456)
+|++++|+++.++.+++.+++++++++++|++.......... ....+.. .. ..+.... ....
T Consensus 71 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (501)
T 3ipl_A 71 ANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKE 150 (501)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC--------------------------------C
T ss_pred cCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeeeecccccccccccccccccchhhccccC
Confidence 999999999999999999999999999999987654332110 0000000 00 0000000 0000
Q ss_pred CCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhc
Q 012774 180 SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALM 259 (456)
Q Consensus 180 ~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G 259 (456)
...........++++++++|||||||.||+|+++|+++.+........+ +..+++++++.+|++|.+++..++.++..|
T Consensus 151 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G 229 (501)
T 3ipl_A 151 SPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-GFDRDTNWLSVLPIYHISGLSVLLRAVIEG 229 (501)
T ss_dssp CHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-CCCTTCEEEECSCTTSHHHHHHHHHHHHHT
T ss_pred CcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-CCCccCEEEEeCcHHHHHHHHHHHHHHHcC
Confidence 0001112345678999999999999999999999999999888877777 788999999999999999998889999999
Q ss_pred ceEEEecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEec
Q 012774 260 ETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA 339 (456)
Q Consensus 260 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~ 339 (456)
+++++.+.+++..+++.|+++++|+++++|+++..|.+...... .++|.+++||+++++++.+.+++. ++++++.
T Consensus 230 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~~--~~~~~~~ 304 (501)
T 3ipl_A 230 FTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQY--NLPIYNS 304 (501)
T ss_dssp CEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHHT--TCCEEEE
T ss_pred ceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHHh--CCCEecc
Confidence 99999999999999999999999999999999999988754432 289999999999999999999884 8999999
Q ss_pred cCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCe
Q 012774 340 YGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGW 419 (456)
Q Consensus 340 yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~ 419 (456)
||+||++..+............+++|+|+++++++|+|++ +|+.|||+|+|+.++.||+++++.+.. | .+||
T Consensus 305 YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~g~ 376 (501)
T 3ipl_A 305 FGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNGYLYPTDLTGT-F-ENGY 376 (501)
T ss_dssp EEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC------SSCCEEEEEESTTSCSCCSBSTTCCCS-E-ETTE
T ss_pred ccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC------CCCccEEEEeccchhhhhCcChhhcch-h-cCCc
Confidence 9999998765543222223356789999999999999954 456799999999999999999999887 5 6899
Q ss_pred eeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 420 MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 420 ~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|+|||+|++|+||+++|.||.||+||++|++|+|.|+
T Consensus 377 ~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~ei 413 (501)
T 3ipl_A 377 FNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQI 413 (501)
T ss_dssp EEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHH
T ss_pred eecCCEEEEcCCCeEEEEccccceEEECCEEECHHHH
Confidence 9999999999999999999999999999999999764
No 26
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=2.3e-66 Score=529.24 Aligned_cols=405 Identities=23% Similarity=0.308 Sum_probs=341.1
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECC--CCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSV--TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSL 115 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~--~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~ 115 (456)
+|+.++|.++++++ |+++|+++.+ .++++||+||.++++++|+.|++ .|+++||+|+++++|++++++++|||
T Consensus 11 ~tl~~~l~~~a~~~----p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~gv~~gd~V~i~~~~~~~~~~~~lA~ 85 (590)
T 3kxw_A 11 QSLVDVVRLRALHS----PNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQA-EGAKPGDRVLLLFAPGLPLIQAFLGC 85 (590)
T ss_dssp SSHHHHHHHHHHHC----TTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhC----CCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchhHHHHHHHH
Confidence 79999999999999 9999998642 35799999999999999999999 89999999999999999999999999
Q ss_pred HHhCCeEecCCCCCC---HHHHHHHhhhcCCeEEEEccchHHHHhccCC-------eEEEEcCCchhhhhcccCCCcccc
Q 012774 116 LSLGVIISPANPVNT---ESEISRQIQLSNPVIAFATSSVVHKLAKLKH-------RTILIDSPEFDSMTMSWNSKHELD 185 (456)
Q Consensus 116 ~~~G~~~v~l~~~~~---~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 185 (456)
+++|++++|+++..+ .+++.++++.+++++++++.+....+..... .+..+. .+.+.... .....
T Consensus 86 ~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~ 160 (590)
T 3kxw_A 86 LYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIA---LESIELNR--SSSWQ 160 (590)
T ss_dssp HHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEE---GGGCCGGG--GGGCC
T ss_pred HHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceee---chhccccc--cccCC
Confidence 999999999999884 5789999999999999999887766543210 011111 11111100 11122
Q ss_pred ccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHH-HHHHhHhcceEEE
Q 012774 186 RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFF-CFRAAALMETAVV 264 (456)
Q Consensus 186 ~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~l~~G~~~~~ 264 (456)
.....++++++++|||||||.||+|+++|+++.+.+......+ +..+++++++++|++|.+++.. ++.++..|+++++
T Consensus 161 ~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~ 239 (590)
T 3kxw_A 161 PTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-HMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIM 239 (590)
T ss_dssp CCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEE
T ss_pred CCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-CCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEE
Confidence 3345778999999999999999999999999999998887777 7889999999999999999865 7889999999999
Q ss_pred ecCC----CHHHHHHHHHHhcceeEEecHHHHHHHhcCC---CCCCCCCCCceEEEecCCCCCHHHHHHHHHhCC-----
Q 012774 265 MQRF----DLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG---STDGYDLSSLETVACGAAPLGKDTIMAFASKFP----- 332 (456)
Q Consensus 265 ~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~----- 332 (456)
.+.+ ++..+++.|+++++|++.++|+++..+.+.. .....+++++|.+++||+++++++.++|.+.++
T Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~ 319 (590)
T 3kxw_A 240 MSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFR 319 (590)
T ss_dssp CCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCC
T ss_pred eCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCC
Confidence 8765 7899999999999999999999999887753 234567899999999999999999999999873
Q ss_pred CCceEeccCccccccccccccCC-------------------------CCCCCCCccccccCCcEEEEEcCCCCCCCCCC
Q 012774 333 KVVLVQAYGLTESTAGVFRTVGP-------------------------DECRRWGSTGRLSAGLEAKIVDPETGDSLPPG 387 (456)
Q Consensus 333 ~~~i~~~yG~tE~~~~~~~~~~~-------------------------~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g 387 (456)
+.++++.||+||++.+++..... .......++|+|+++ ++|+|++++.+++.|
T Consensus 320 ~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g 397 (590)
T 3kxw_A 320 KEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFD 397 (590)
T ss_dssp GGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTT
T ss_pred ccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCC
Confidence 45799999999998876643210 111233678999998 889997779999999
Q ss_pred CcceEEEecCCcccccCCCccccccccCC------CC--eeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 388 KEGELSIRGPTIMKGYVGEPEVTSATLLP------DG--WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 388 ~~Gel~i~g~~~~~gy~~~~~~~~~~~~~------~g--~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+.|||+|+|++++.||+++|+.|++.|.. +| ||+|||+|++| ||+|+|.||.||+||++|+||+|.||
T Consensus 398 ~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eI 473 (590)
T 3kxw_A 398 QVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDI 473 (590)
T ss_dssp BCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHH
T ss_pred CEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHH
Confidence 99999999999999999999999999854 24 99999999998 99999999999999999999999774
No 27
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=5e-65 Score=515.95 Aligned_cols=405 Identities=19% Similarity=0.198 Sum_probs=318.8
Q ss_pred CCCHHHHhhhcccCCCCCCCCCcEEEECCC--------CceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcH
Q 012774 37 PISAVDYVSSLRATLPWRDDDTVALINSVT--------GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI 108 (456)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~p~~~A~~~~~~--------~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~ 108 (456)
.+|+.++|.++++++ |+++|+++... ++++||+||.++++++|+.|.+ .|+ +||+|+++++|++++
T Consensus 19 ~~tl~~~l~~~a~~~----p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~g~-~gd~V~i~~~n~~~~ 92 (562)
T 3ite_A 19 TVPPSHYIETWAKTH----PEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIH-ASL-HGRAIAVSLDRSLIA 92 (562)
T ss_dssp CCCTTHHHHHHHHHC----TTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHH-TTC-SSCEEEEECCSCHHH
T ss_pred cCCHHHHHHHHHHHC----CCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHh-cCC-CCCEEEEEeCCCHHH
Confidence 389999999999999 99999987421 2789999999999999999998 898 799999999999999
Q ss_pred HHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhcc-CCeEEEEcCCchhhhhcccCCCcccccc
Q 012774 109 PILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-KHRTILIDSPEFDSMTMSWNSKHELDRA 187 (456)
Q Consensus 109 ~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (456)
++++|||+++|++++|+++.++.+++.+++++++++++|+++......... ...++......+.+....... .....
T Consensus 93 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 170 (562)
T 3ite_A 93 FAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVELPPETKVLDTKNQSFIENLSTQDT--SDILN 170 (562)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCCCTTCEEEETTCHHHHHHHHHSCC--SCCCC
T ss_pred HHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccccCccceeecccchhhhhhcccccc--ccccc
Confidence 999999999999999999999999999999999999999987654433211 112222222222222221111 11223
Q ss_pred CCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCC-------CCCCCCcEEEEecchhhHhhHHHHHHHhHhcc
Q 012774 188 KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS-------PKRVSPAVMLFTMPYFHIYGLFFCFRAAALME 260 (456)
Q Consensus 188 ~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~-------~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~ 260 (456)
...++++++++|||||||.||+|+++|+++.+........+ ......+++++..|+.|..++..++.++..|+
T Consensus 171 ~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 250 (562)
T 3ite_A 171 NYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGL 250 (562)
T ss_dssp CCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTC
T ss_pred CCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhccc
Confidence 34568899999999999999999999999987766543221 13567889999999999888888889999999
Q ss_pred eEEEecCCC-HHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEec
Q 012774 261 TAVVMQRFD-LKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA 339 (456)
Q Consensus 261 ~~~~~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~ 339 (456)
++++.+.+. +..+++.++++++|++.++|+++..+... ..+++++|.+++||+++++++.+.|++.+ ++++++.
T Consensus 251 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~ 325 (562)
T 3ite_A 251 CAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PEDAPHLVYLGVGGEKMTPRTQQIWSSSD-RVALVNV 325 (562)
T ss_dssp EEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----GGGSTTCCEEEEESSCCCHHHHHHHTTCS-SCEEEEE
T ss_pred EEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----ccccCceEEEEEecCCCCHHHHHHHhhCC-CcEEEEe
Confidence 999887543 57788999999999999999999887543 34688999999999999999999999876 8999999
Q ss_pred cCccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCC-
Q 012774 340 YGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDG- 418 (456)
Q Consensus 340 yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g- 418 (456)
||+||++..++..... .....+++|+|+++++++|+|+++++.+++|+.|||+|+|+.++.||+++++.+...+ .+|
T Consensus 326 YG~TE~~~~~~~~~~~-~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~-~~g~ 403 (562)
T 3ite_A 326 YGPTEVTIGCSAGRIL-PDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCD-INGR 403 (562)
T ss_dssp ECCGGGCSCSEEEECC-TTSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEE-ETTE
T ss_pred eccchheeeeeeeeec-CCCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCcccccccc-CCCC
Confidence 9999998766553322 2335678999999999999998889999999999999999999999999999988765 355
Q ss_pred -eeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 419 -WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 419 -~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
||+|||+|++|+||+|+|.||.||+||++|+||+|.||
T Consensus 404 ~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eI 442 (562)
T 3ite_A 404 KMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEV 442 (562)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEC----------------
T ss_pred EEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHH
Confidence 99999999999999999999999999999999999986
No 28
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=1e-65 Score=513.30 Aligned_cols=391 Identities=23% Similarity=0.326 Sum_probs=327.3
Q ss_pred CCHHHHhhhcccCCCCCCCC-CcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDD-TVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~-~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~ 116 (456)
.|+.++|.++++++ |+ ++|+++. ++++||+||.++++++|..|.. |++|+++++|++++++++|||+
T Consensus 22 ~tl~~~l~~~a~~~----p~d~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~~------~~~V~i~~~~~~~~~~~~la~~ 89 (505)
T 3nyq_A 22 SSLFPALSPAPTGA----PADRPALRFG--ERSLTYAELAAAAGATAGRIGG------AGRVAVWATPAMETGVAVVAAL 89 (505)
T ss_dssp --CCTTTSSCCCSG----GGGSEEEEET--TEEEEHHHHHHHHHHHHTTCC---------CEEEECCSSHHHHHHHHHHH
T ss_pred chhHHHHHHHHHhC----CCCCeEEEEC--CeeeeHHHHHHHHHHHHhhccC------CCEEEEEcCCCHHHHHHHHHHH
Confidence 68899999999998 65 9999998 8899999999999999988743 7899999999999999999999
Q ss_pred HhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhccCCeEEEEcCCchhhhhcccCCCccccccCCCCCCEEE
Q 012774 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA 196 (456)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 196 (456)
++|++++|+++.++.+++.+++++++++++|++++............+.++.. ...........++++++
T Consensus 90 ~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~d~a~ 159 (505)
T 3nyq_A 90 LAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPALGALERVDVDVR----------ARGAVPEDGADDGDPAL 159 (505)
T ss_dssp HHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCCGGGTTSEEEECCTT----------CCCCCCCCCCCTTSEEE
T ss_pred HhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccchhhccccccccccc----------cccCCCCCCCCCCCeEE
Confidence 99999999999999999999999999999999864211000111222222211 00011223456789999
Q ss_pred EEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhH-HHHHHHhHhcceEEEecCCCHHHHHH
Q 012774 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLK 275 (456)
Q Consensus 197 i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~ 275 (456)
++|||||||.||+|+++|+++.+.+......+ +..+++++++.+|++|..++ ..++.++..|+++++.+.+++..+++
T Consensus 160 i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~ 238 (505)
T 3nyq_A 160 VVYTSGTTGPPKGAVIPRRALATTLDALADAW-QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAR 238 (505)
T ss_dssp EEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCCHHHHHH
T ss_pred EEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCChHHHHH
Confidence 99999999999999999999999888877776 67889999999999999998 56889999999999999999999999
Q ss_pred HHHHhcceeEEecHHHHHHHhcCCCCC---CCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccc
Q 012774 276 AVEEFRVTHAAVTPPIVVAMSKGGSTD---GYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT 352 (456)
Q Consensus 276 ~i~~~~~t~~~~~P~~~~~l~~~~~~~---~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~ 352 (456)
.+ ++++|+++++|+++..+++..... ...++++|.+++||+++++++.+++.+.+ +.++++.||+||++..+...
T Consensus 239 ~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~ 316 (505)
T 3nyq_A 239 EL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAAT-GRRVIERYGMTETLMNTSVR 316 (505)
T ss_dssp HH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECC
T ss_pred HH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhc-CCeeecccchhhcccccccC
Confidence 99 889999999999999998743221 13467899999999999999999999987 89999999999998765542
Q ss_pred cCCCCCCCCCccccccCCcEEEEEcCCCCCCCCC---CCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEc
Q 012774 353 VGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPP---GKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYID 429 (456)
Q Consensus 353 ~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~---g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~ 429 (456)
.......+++|+|+++++++|+| +++++++. |+.|||+|+|+.++.||+++++.+.+.|..+|||+|||+|++|
T Consensus 317 --~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~ 393 (505)
T 3nyq_A 317 --ADGEPRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRD 393 (505)
T ss_dssp --TTSCCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEEC
T ss_pred --CCCCCCCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEEC
Confidence 23334568899999999999999 67888776 8999999999999999999999999999889999999999999
Q ss_pred cCCcEEEeccc-ccceeeCCeeecCCCC
Q 012774 430 EDGFLFIVDRL-KDLIKYKGYQVLPLLN 456 (456)
Q Consensus 430 ~dg~l~~~GR~-~d~ik~~G~~v~p~e~ 456 (456)
+||+++|.||+ ||+||++|++|+|.||
T Consensus 394 ~dG~l~~~GR~~d~~ik~~G~~v~~~eI 421 (505)
T 3nyq_A 394 PDGYVRIVGRKATDLIKSGGYKIGAGEI 421 (505)
T ss_dssp TTSCEEEEEESSCCCEEETTEEECHHHH
T ss_pred CCccEEEeCCccCceEEeCCEEECHHHH
Confidence 99999999997 5999999999999764
No 29
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=2.7e-64 Score=553.66 Aligned_cols=400 Identities=22% Similarity=0.251 Sum_probs=344.0
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~ 117 (456)
.++++++.++++++ |+++|+++. ++++||+||.++++++|+.|.+ .|+++|++|+|+++++++++++++||++
T Consensus 464 ~~l~~~~~~~~~~~----p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~g~~V~i~~~~s~~~vv~~lailk 536 (1304)
T 2vsq_A 464 KPLTYWFKEAVNAN----PDAPALTYS--GQTLSYRELDEEANRIARRLQK-HGAGKGSVVALYTKRSLELVIGILGVLK 536 (1304)
T ss_dssp CCHHHHHHHHHHHC----TTSEEEESS--SCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhC----CCCeEEEEC--CeeEcHHHHHHHHHHHHHHHHh-cCcCCcCEEEEEeCCCHHHHHHHHHHHH
Confidence 68999999999999 999999987 8899999999999999999999 8999999999999999999999999999
Q ss_pred hCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccchHHHHhccC--CeEEEEcCCchhhhhcccCCCccccccCCCCCCEE
Q 012774 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK--HRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVA 195 (456)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 195 (456)
+|++++|++|.++.+++.++++++++++++++......+..+. ...+.++.. ..... ..........+++++
T Consensus 537 aG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~a 610 (1304)
T 2vsq_A 537 AGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQ--TRFEE----QASDPATAIDPNDPA 610 (1304)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCCCCSEEEESSCG--GGGGS----CSSCCCCCCCTTSEE
T ss_pred HCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccCCCCcEEEeccc--ccccc----ccCCCCCCCCCCCeE
Confidence 9999999999999999999999999999999977654433221 223333221 11111 001122345678999
Q ss_pred EEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEecC---CCHHH
Q 012774 196 AIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKM 272 (456)
Q Consensus 196 ~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~---~~~~~ 272 (456)
|++|||||||.||||+++|+++.+. ......+ ...++++++...|+.|..+...++.++..|+++++.+. .++..
T Consensus 611 yiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~-~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~ 688 (1304)
T 2vsq_A 611 YIMYTSGTTGKPKGNITTHANIQGL-VKHVDYM-AFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTER 688 (1304)
T ss_dssp EEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSS-CCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHH
T ss_pred EEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhc-CCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHH
Confidence 9999999999999999999999876 4444444 67889999999999998888889999999999999874 68999
Q ss_pred HHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccccc
Q 012774 273 MLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT 352 (456)
Q Consensus 273 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~ 352 (456)
+++.|+++++|+++++|+++..+.+.. ...++++|.+++|||++++++.++|.+.+++.+++|.||+||++.+++..
T Consensus 689 l~~~i~~~~vt~~~~~p~~~~~l~~~~---~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~ 765 (1304)
T 2vsq_A 689 LTDLILQENVNVMFATTALFNLLTDAG---EDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAH 765 (1304)
T ss_dssp HHHHHHHHTCCEEEEEHHHHHHHHHHC---SHHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEE
T ss_pred HHHHHHHcCCcEEEccHHHHHHHHhhc---hhcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheee
Confidence 999999999999999999999997642 22367899999999999999999999988778999999999998876654
Q ss_pred cCCC--CCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCC------CCeeeccc
Q 012774 353 VGPD--ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP------DGWMRTGD 424 (456)
Q Consensus 353 ~~~~--~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~------~g~~~TGD 424 (456)
.... ......++|+|++|++++|+| +.+++++.|+.|||+|+|+++++||+++|+.|+++|.. ++||+|||
T Consensus 766 ~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGD 844 (1304)
T 2vsq_A 766 VVHDLPDSISSLPIGKPISNASVYILN-EQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGD 844 (1304)
T ss_dssp ECCCCCSSCSSCCCBEECTTEEEEEEC-TTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEE
T ss_pred eccCccccCCCCCCceeeCCCEEEEEC-CCcCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCC
Confidence 3222 223456899999999999999 77899999999999999999999999999999999853 35999999
Q ss_pred eEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 425 LCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 425 l~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+|++++||+|+|+||+||+||++|+||+|.||
T Consensus 845 l~~~~~dG~l~~~GR~d~qvki~G~rie~~eI 876 (1304)
T 2vsq_A 845 LARWLPDGTIEYAGRIDDQVKIRGHRIELEEI 876 (1304)
T ss_dssp EEEECTTSCEEEEEEGGGEEEETTEEEEHHHH
T ss_pred eEEEcCCCeEEEEcCCCCEEEECCEeeCHHHH
Confidence 99999999999999999999999999999774
No 30
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=4.3e-64 Score=511.38 Aligned_cols=406 Identities=20% Similarity=0.305 Sum_probs=338.7
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECC-CCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSV-TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~-~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~ 116 (456)
.|+.+++.++++++ |+.+++.+.. .++++||+||.++++++|+.|++ .|+++||+|+++++|+++++++++||+
T Consensus 21 ~tl~~~l~~~a~~~----p~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 95 (576)
T 3gqw_A 21 PTLVDALDYAALSS----AGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLS-LNLKKGDRVALIAETSSEFVEAFFACQ 95 (576)
T ss_dssp SSHHHHHHHHTTSS----CEEEEECTTSCEEEEEEHHHHHHHHHHHHHHHHH-TCCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred CcHHHHHHHHhhCC----CCeEEeCCCCCceeEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHH
Confidence 69999999999999 9888876532 24789999999999999999999 899999999999999999999999999
Q ss_pred HhCCeEecCCCCCC-------HHHHHHHhhhcCCeEEEEccchHHHHhcc---CCeEEEEcCCchhhhhcccCCCccccc
Q 012774 117 SLGVIISPANPVNT-------ESEISRQIQLSNPVIAFATSSVVHKLAKL---KHRTILIDSPEFDSMTMSWNSKHELDR 186 (456)
Q Consensus 117 ~~G~~~v~l~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (456)
++|++++|+++.++ .+++.++++.++++++|++++....+... ......+.. .+.. ... ......
T Consensus 96 ~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~-~~~~~~ 170 (576)
T 3gqw_A 96 YAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHVLSH-AWFK---ALP-EADVAL 170 (576)
T ss_dssp HTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTTCEEEEH-HHHH---TSC-CCCCCC
T ss_pred HhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCcceecch-hhhh---ccc-cccccc
Confidence 99999999999998 89999999999999999998877655421 111111110 0111 000 112222
Q ss_pred cCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHH-HHHHHhHhcceEEEe
Q 012774 187 AKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF-FCFRAAALMETAVVM 265 (456)
Q Consensus 187 ~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~-~~~~~l~~G~~~~~~ 265 (456)
....++++++++|||||||.||+|+++|+++.+++...........++|++++++|++|.+++. .++.++..|+++++.
T Consensus 171 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~ 250 (576)
T 3gqw_A 171 QRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYL 250 (576)
T ss_dssp CCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEEC
T ss_pred CCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEc
Confidence 3456789999999999999999999999999988877655422678999999999999999984 466788889988887
Q ss_pred cC----CCHHHHHHHHHHhcceeEEecHHHHHHHhcCCC---CCCCCCCCceEEEecCCCCCHHHHHHHHHhCC-----C
Q 012774 266 QR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS---TDGYDLSSLETVACGAAPLGKDTIMAFASKFP-----K 333 (456)
Q Consensus 266 ~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~-----~ 333 (456)
+. +++..+++.|+++++|+++++|+++..+.+... ....+++++|.+++||+++++++.++|.+.++ +
T Consensus 251 ~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~ 330 (576)
T 3gqw_A 251 RTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDN 330 (576)
T ss_dssp CHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCG
T ss_pred chhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCc
Confidence 63 588999999999999999999999988876543 23456899999999999999999999999874 7
Q ss_pred CceEeccCccccccccccccCCCCC--------------------------CCCCccccccCCcEEEEEcCCCCCCCCCC
Q 012774 334 VVLVQAYGLTESTAGVFRTVGPDEC--------------------------RRWGSTGRLSAGLEAKIVDPETGDSLPPG 387 (456)
Q Consensus 334 ~~i~~~yG~tE~~~~~~~~~~~~~~--------------------------~~~~~~G~~~~~~~~~i~d~~~~~~~~~g 387 (456)
.++++.||+||++.+++........ ....++|+|+++++++|+| ++++++++|
T Consensus 331 ~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g 409 (576)
T 3gqw_A 331 KTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN-EAGMPVAER 409 (576)
T ss_dssp GGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC-TTSCBCCTT
T ss_pred ccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC-CCCCCCCCC
Confidence 8899999999998876653211100 0112789999999999999 889999999
Q ss_pred CcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEccCCcEEEecccccceeeCCeeecCCCC
Q 012774 388 KEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 388 ~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
+.|||+|+|+.+++||+++++.+.+.+ .+|||+|||+|++ +||+++|+||.||+||++|+||+|.||
T Consensus 410 ~~GEl~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~~G~~v~p~eI 476 (576)
T 3gqw_A 410 VVGHICISGPSLMSGYFGDQVSQDEIA-ATGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQDI 476 (576)
T ss_dssp BCEEEEEESTTSCCCBTTCHHHHHHHH-HHSCEEEEEEEEE-ETTEEEEEEETTTCEEETTEEECHHHH
T ss_pred CeEEEEEeCccccccccCCcccccccc-CCCeeeccceEEE-ECCEEEEEecCcceEEECCEEECHHHH
Confidence 999999999999999999998887765 6899999999999 799999999999999999999999764
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=4.4e-64 Score=499.99 Aligned_cols=385 Identities=21% Similarity=0.283 Sum_probs=316.4
Q ss_pred CCHHHHhhhcccCCCCCCCCCcEEEECC-----CC--ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHH
Q 012774 38 ISAVDYVSSLRATLPWRDDDTVALINSV-----TG--LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI 110 (456)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~p~~~A~~~~~-----~~--~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~ 110 (456)
.|+.++|.++++++ |+++|+++.+ ++ +++||+||.++++++|+.|++ .|+ +||+|+|+++|++++++
T Consensus 24 ~tl~~~l~~~a~~~----pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~-~g~-~gd~V~i~~~n~~e~~~ 97 (480)
T 3t5a_A 24 RSLPAALRACARLQ----PHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSR-CGS-TGDRVVISAPQGLEYVV 97 (480)
T ss_dssp CCHHHHHHHHHHHS----TTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTT-SSC-TTCEEEEECCSSHHHHH
T ss_pred ccHHHHHHHHHHhC----CCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHh-cCC-CCCEEEEEcCCcHHHHH
Confidence 79999999999999 9999998752 12 789999999999999999998 896 99999999999999999
Q ss_pred HHHHHHHhCCeEecCCC---CCCHHHHHHHhhhcCCeEEEEccchHHHHhccCC--------eEEEEcCCchhhhhcccC
Q 012774 111 LYFSLLSLGVIISPANP---VNTESEISRQIQLSNPVIAFATSSVVHKLAKLKH--------RTILIDSPEFDSMTMSWN 179 (456)
Q Consensus 111 ~~la~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 179 (456)
++|||+++|++++|+++ .++.+++.+++++++++++|+++.....+..... .++.++. ....
T Consensus 98 ~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-- 170 (480)
T 3t5a_A 98 AFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDL-----LDLD-- 170 (480)
T ss_dssp HHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGG-----SCTT--
T ss_pred HHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecc-----cccc--
Confidence 99999999999999999 7788999999999999999999888776653321 1222211 1000
Q ss_pred CCccccccCCCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCC------CcEEEEecchhhHhhH-HHH
Q 012774 180 SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVS------PAVMLFTMPYFHIYGL-FFC 252 (456)
Q Consensus 180 ~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~------~~~~~~~~p~~~~~g~-~~~ 252 (456)
...........++++++++|||||||.||+|+++|+++.+++......+ .... ++++++++|++|.+++ ..+
T Consensus 171 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~ 249 (480)
T 3t5a_A 171 APNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-FADTDGIPPPNSALVSWLPFYHDMGLVIGI 249 (480)
T ss_dssp CC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-CTTTTTCCCTTEEEEECCCTTSTTHHHHHT
T ss_pred cccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-ccccccCCCCCCeEEEeCCCcCccHHHHHH
Confidence 0112223445678999999999999999999999999988877766555 3444 8999999999999997 567
Q ss_pred HHHhHhcceEEEecCC----CHHHHHHHHHHhcceeEEecHHHHHHHhcC----CCCCCCCCCCceEEEecCCCCCHHHH
Q 012774 253 FRAAALMETAVVMQRF----DLKMMLKAVEEFRVTHAAVTPPIVVAMSKG----GSTDGYDLSSLETVACGAAPLGKDTI 324 (456)
Q Consensus 253 ~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~----~~~~~~~l~~lr~v~~gG~~~~~~~~ 324 (456)
+.++..|+++++.+.. ++..+++.++++++| +.++|+++..++.. ......+++++|.+++||+++++++.
T Consensus 250 ~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~ 328 (480)
T 3t5a_A 250 CAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATI 328 (480)
T ss_dssp HHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTCCHHHH
T ss_pred HHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcCCHHHH
Confidence 8999999999998753 899999999999999 78888888877653 22345678999999999999999999
Q ss_pred HHHHHhC-----CCCceEeccCccccccccccccCCCC-----------------------CCCCCccccccCCcEEEEE
Q 012774 325 MAFASKF-----PKVVLVQAYGLTESTAGVFRTVGPDE-----------------------CRRWGSTGRLSAGLEAKIV 376 (456)
Q Consensus 325 ~~~~~~~-----~~~~i~~~yG~tE~~~~~~~~~~~~~-----------------------~~~~~~~G~~~~~~~~~i~ 376 (456)
++|++.+ +++.+++.||+||++.+++....... .....++|+|++ ++++|+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~iv 407 (480)
T 3t5a_A 329 KRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIV 407 (480)
T ss_dssp HHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEE
T ss_pred HHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEE
Confidence 9999988 45689999999999887665432111 123458999999 999999
Q ss_pred cCCCCCCCCCCCcceEEEecCCcccccCCCccccccccC-----------CCCeeeccceEEEccCCcEEEecc
Q 012774 377 DPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLL-----------PDGWMRTGDLCYIDEDGFLFIVDR 439 (456)
Q Consensus 377 d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~-----------~~g~~~TGDl~~~~~dg~l~~~GR 439 (456)
|++++++++.|+.|||+|+|++++.||+++|+.|++.|. .+|||+|||+|++| ||+|+|+||
T Consensus 408 d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 408 DSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp ETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred cCCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 977789999999999999999999999999999999985 46799999999996 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=5.9e-42 Score=325.94 Aligned_cols=230 Identities=19% Similarity=0.200 Sum_probs=198.4
Q ss_pred CCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhccCCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEecCCCH
Q 012774 191 QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDL 270 (456)
Q Consensus 191 ~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~ 270 (456)
.+++++|+|||||||.||+|++||+++.+++......+ +..++|++++++|++|.+|+..++.++..|+++++.+..
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~-- 112 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT-- 112 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC--
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc--
Confidence 36889999999999999999999999999988888877 788999999999999999998889999999999888642
Q ss_pred HHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCccccccccc
Q 012774 271 KMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVF 350 (456)
Q Consensus 271 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~ 350 (456)
...++.|+++++|++.++|+++..|++... ...+++++|.+++||+++++++.+++++. ++++++.||+||++..+.
T Consensus 113 ~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~-~~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~~ 189 (358)
T 4gs5_A 113 ANPLAGLDHADFDFVAMVPMQLQSILENSA-TSGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHVA 189 (358)
T ss_dssp SCTTTTCSSCCCSEEEECHHHHHHHHHCTT-TGGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEEE
T ss_pred ccHHHHHHHhCCeEEEcChHHHHHhhcccc-ccccCCcceEEEEcccCCCchheeccccc--CceEEeccccccccceee
Confidence 134677899999999999999999988754 33468999999999999999999999875 899999999999988766
Q ss_pred cccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEcc
Q 012774 351 RTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDE 430 (456)
Q Consensus 351 ~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~ 430 (456)
.... .....+.+|.+.||+++.+.+ .|||+++|+.. .+|||+|||+|++|+
T Consensus 190 ~~~~--~~~~~g~~~~~~pgv~~~~~~-----------~Gel~~~g~~~----------------~~g~~~TGDlg~~d~ 240 (358)
T 4gs5_A 190 LKAL--NGPEASELYVFLPGIQYGVDE-----------RGCLHISGAVT----------------NGQTVQTNDLVEIHG 240 (358)
T ss_dssp EEEC--SSTTCCSCEEECTTCEEEECT-----------TSEEEEESGGG----------------TTCCEEEEEEEEECS
T ss_pred cccc--cccccceeeccCCCeEEEecC-----------cCceEEecccc----------------cCcceecCCcccccc
Confidence 5332 223457899999999988754 49999988632 578999999999999
Q ss_pred CCcEEEecccccceeeCCeeecCCCC
Q 012774 431 DGFLFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 431 dg~l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|| ++++||+||+||++|+||+|.||
T Consensus 241 ~g-~~~~GR~dd~Ik~~G~~v~p~eI 265 (358)
T 4gs5_A 241 NA-FQWIGRADNVINSGGVKIVLDQI 265 (358)
T ss_dssp SE-EEEEEEGGGEEEETTEEEEHHHH
T ss_pred Cc-eEEcccccCeEEECCEEECHHHH
Confidence 88 66679999999999999999764
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=3.6e-41 Score=330.41 Aligned_cols=249 Identities=22% Similarity=0.218 Sum_probs=208.9
Q ss_pred CCC-CCEEEEEcCCCCCCCCchhcccHHHHHHHHHHh---ccCCCCCCCCcEEEEecchhhHhhH-HHHHHHhHhcceEE
Q 012774 189 VCQ-SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASS---FASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAV 263 (456)
Q Consensus 189 ~~~-~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~---~~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l~~G~~~~ 263 (456)
..+ +++++++|||||||.||+|+++|+++....... .... +..+++++++.+|+.|..+. ...+.++..|++++
T Consensus 82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMV-GIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHT-TCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHc-CCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 344 789999999999999999999999997665544 2233 57889999999998655544 56778899999999
Q ss_pred EecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCC--CCCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccC
Q 012774 264 VMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGY--DLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYG 341 (456)
Q Consensus 264 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG 341 (456)
+.+.+++..+++.|+++++|+++++|+++..|++....... .++++|.+++||+++++++.+.+++.| ++++++.||
T Consensus 161 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG 239 (436)
T 3qov_A 161 PAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSFG 239 (436)
T ss_dssp CCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEE
T ss_pred eCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEecCc
Confidence 99888999999999999999999999999999876443333 378999999999999999999999998 899999999
Q ss_pred ccccccccccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeee
Q 012774 342 LTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMR 421 (456)
Q Consensus 342 ~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~ 421 (456)
+||+++.++..... .....|.+.+++.++|+|+++++++++|+.|||+|+|. +.+.+ +++||+
T Consensus 240 ~TE~~~~~~~~~~~----~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~------------~~~~~-~~~~y~ 302 (436)
T 3qov_A 240 MTEMNGPGVAFECQ----EQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTL------------DREMM-PLIRYR 302 (436)
T ss_dssp EGGGTEEEEEEECT----TCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEES------------SCCSS-CCCSEE
T ss_pred chhhcCCeeEEecC----CCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEecc------------CcCCc-eEEEEE
Confidence 99995542222221 12347778889999999988999999999999999983 23344 688999
Q ss_pred ccceEEEccCC------c---EEEecccccceeeCCeeecCCCC
Q 012774 422 TGDLCYIDEDG------F---LFIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 422 TGDl~~~~~dg------~---l~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|||+|+++++| + ++|.||.||+||++|++|+|.|+
T Consensus 303 TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~ei 346 (436)
T 3qov_A 303 TRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQV 346 (436)
T ss_dssp EEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHH
T ss_pred cCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHH
Confidence 99999999998 6 69999999999999999999764
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=1.9e-40 Score=325.29 Aligned_cols=249 Identities=25% Similarity=0.280 Sum_probs=207.4
Q ss_pred CCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhc---cCCCCCCCCcEEEEecch-hhHhhHHHHHHHhHhcceEEE
Q 012774 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF---ASSPKRVSPAVMLFTMPY-FHIYGLFFCFRAAALMETAVV 264 (456)
Q Consensus 189 ~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~---~~~~~~~~~~~~~~~~p~-~~~~g~~~~~~~l~~G~~~~~ 264 (456)
..++++++++|||||||.||+|+++|+++........ ..+ +..++|++++.+|+ +|..++...+.++..|+++++
T Consensus 87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAA-GARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHT-TCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc-CCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 4567889999999999999999999999876654332 234 57889999999998 688877778889999999998
Q ss_pred ecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCC--CCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCc
Q 012774 265 MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYD--LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGL 342 (456)
Q Consensus 265 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~--l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~ 342 (456)
.+.++++.+++.|+++++|+++++|+++..|++.......+ ++++|.+++||+++++++.+.+++.+ ++++++.||+
T Consensus 166 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~ 244 (437)
T 2y27_A 166 FGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYGL 244 (437)
T ss_dssp CCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEecCCc
Confidence 88889999999999999999999999999998754322322 47899999999999999999999988 8999999999
Q ss_pred cccccc-cccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeee
Q 012774 343 TESTAG-VFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMR 421 (456)
Q Consensus 343 tE~~~~-~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~ 421 (456)
||+++. +... ... ....++.+.+++.++|+|++++++++.|+.|||+|+|. +.+.| +++||+
T Consensus 245 TE~~g~~~~~~-~~~---~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~------------t~~~~-~~~~y~ 307 (437)
T 2y27_A 245 SEVMGPGVASE-CVE---TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSL------------TKEAL-PIIRYR 307 (437)
T ss_dssp TTTTEEEEEEC-CTT---TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSS-CCCSEE
T ss_pred hhhcCCeeEEe-cCC---CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecC------------CcCCc-hhheee
Confidence 998432 3221 111 11136677789999999988899999999999999973 33445 688999
Q ss_pred ccceEEEcc-CCcE-----EEecccccceeeCCeeecCCCC
Q 012774 422 TGDLCYIDE-DGFL-----FIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 422 TGDl~~~~~-dg~l-----~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|||+|++++ ||++ +|.||.||+||++|++|+|.|+
T Consensus 308 TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~ei 348 (437)
T 2y27_A 308 TRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQI 348 (437)
T ss_dssp EEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHH
T ss_pred cCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHH
Confidence 999999999 6985 8999999999999999999763
No 35
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=2.5e-40 Score=325.07 Aligned_cols=249 Identities=23% Similarity=0.259 Sum_probs=207.4
Q ss_pred CCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhc---cCCCCCCCCcEEEEecch-hhHhhHHHHHHHhHhcceEEE
Q 012774 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF---ASSPKRVSPAVMLFTMPY-FHIYGLFFCFRAAALMETAVV 264 (456)
Q Consensus 189 ~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~---~~~~~~~~~~~~~~~~p~-~~~~g~~~~~~~l~~G~~~~~ 264 (456)
..++++++++|||||||.||+|+++|+++........ ..+ +..++|++++.+|+ +|..++...+.++..|+++++
T Consensus 89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAA-GGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHT-TCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc-CCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 4568889999999999999999999999876554332 234 67889999999998 577777778889999999999
Q ss_pred ecCCCHHHHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCC--CCCceEEEecCCCCCHHHHHHHHHhCCCCceEeccCc
Q 012774 265 MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYD--LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGL 342 (456)
Q Consensus 265 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~--l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~i~~~yG~ 342 (456)
.+.++++.+++.|+++++|+++++|+++..|++.......+ ++++|.+++||+++++++.+.+++.+ ++++++.||+
T Consensus 168 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~ 246 (443)
T 2y4o_A 168 MSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYGL 246 (443)
T ss_dssp CCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEeccCc
Confidence 88889999999999999999999999999998754323332 47999999999999999999999988 8999999999
Q ss_pred cccccc-cccccCCCCCCCCCccccccCCcEEEEEcCCCCCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeee
Q 012774 343 TESTAG-VFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMR 421 (456)
Q Consensus 343 tE~~~~-~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~ 421 (456)
||+++. +... ... .....+.+.+++.++|+|++++++++.|+.|||+|+|. +.+.| +++||+
T Consensus 247 TE~~g~~~~~~-~~~---~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~------------t~~~~-p~~~y~ 309 (443)
T 2y4o_A 247 SEVMGPGVACE-CVE---TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSL------------TKEAM-PVIRYR 309 (443)
T ss_dssp TTTTEEEEEEE-CTT---TCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSS-CCSSEE
T ss_pred hhhcCCeEEec-cCC---CCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCC------------CcccC-hhheee
Confidence 997443 2221 111 11125667789999999987899999999999999973 23444 678999
Q ss_pred ccceEEEccC-CcE-----EEecccccceeeCCeeecCCCC
Q 012774 422 TGDLCYIDED-GFL-----FIVDRLKDLIKYKGYQVLPLLN 456 (456)
Q Consensus 422 TGDl~~~~~d-g~l-----~~~GR~~d~ik~~G~~v~p~e~ 456 (456)
|||+|+++++ |++ ++.||.||+||++|++|+|.|+
T Consensus 310 TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~ei 350 (443)
T 2y4o_A 310 TRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQI 350 (443)
T ss_dssp EEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHH
T ss_pred cCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHH
Confidence 9999999999 987 8999999999999999999764
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=100.00 E-value=1.2e-33 Score=270.65 Aligned_cols=238 Identities=18% Similarity=0.139 Sum_probs=183.6
Q ss_pred CCCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHHhc---cCCCCCCCCcEEEEecch-hhHhhHHHHHHHhHhcceEEE
Q 012774 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF---ASSPKRVSPAVMLFTMPY-FHIYGLFFCFRAAALMETAVV 264 (456)
Q Consensus 189 ~~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~~~---~~~~~~~~~~~~~~~~p~-~~~~g~~~~~~~l~~G~~~~~ 264 (456)
..++++++++|||||||.||+|+++|+++........ ... +..+++++++.+|+ +|..++...+.++..|+ +++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHR-PGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTS-TTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhh-CCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEE
Confidence 4678899999999999999999999999998887433 333 57889999999999 99999977777788999 667
Q ss_pred ecCCCHH-----------------------HHHHHHHHhcceeEEecHHHHHHHhcCCCCCCCCCCCceEEEecCCCCCH
Q 012774 265 MQRFDLK-----------------------MMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGK 321 (456)
Q Consensus 265 ~~~~~~~-----------------------~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~ 321 (456)
...+++. .+++.|+++++|++.++|+++..|++.......+++++|.+++|||++++
T Consensus 166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~ 245 (369)
T 3hgu_A 166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNL 245 (369)
T ss_dssp CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCH
T ss_pred CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCH
Confidence 7777877 88889999999999999999999987643223456789999999999999
Q ss_pred HHHHHHH-HhCCCCceEeccCccccccccccccCCCCCCCCCccccc------cCCcEEEEEcCCCCCCCCCCCcceEEE
Q 012774 322 DTIMAFA-SKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRL------SAGLEAKIVDPETGDSLPPGKEGELSI 394 (456)
Q Consensus 322 ~~~~~~~-~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~------~~~~~~~i~d~~~~~~~~~g~~Gel~i 394 (456)
++.++++ +.||++++++.||+||+++++..+. ..++|+| +++++++|+|+++++++++|+.|||+|
T Consensus 246 ~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~-------~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~v 318 (369)
T 3hgu_A 246 DEIKFIASEILPDCEFSASYGSTSALGVSRSLL-------ITSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVIV 318 (369)
T ss_dssp HHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECC-------BCTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEEEEE
T ss_pred HHHHHHHHHhCCCcEEEcccCchhhhcceeccc-------cccCCCcccccCCCCCeEEEEECCCCCcCCCCCCceEEEE
Confidence 9999999 9999999999999999987654311 1158888 999999999976999999999999999
Q ss_pred ecCCcccccCCCccccccccCCCCeeeccceEEEccC--C-------cEEEecccccceeeCCe
Q 012774 395 RGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDED--G-------FLFIVDRLKDLIKYKGY 449 (456)
Q Consensus 395 ~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~d--g-------~l~~~GR~~d~ik~~G~ 449 (456)
++.. ...+ -.+|+|||++.+.+. | .+..++|.+++.++.|.
T Consensus 319 t~l~------------~~~~--l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 319 THLS------------PWAF--YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEE------------TTEE--EEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred EEcC------------cccc--cccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 8732 1112 125899999988543 2 35567888888888874
No 37
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.87 E-value=2.6e-09 Score=105.17 Aligned_cols=126 Identities=16% Similarity=0.163 Sum_probs=79.4
Q ss_pred CCC---ceEEEecCCCCCHHHHHHHHHhCCCCceE-eccCccccccccccccCCCCCCCCCcccc-ccCC-cEEEEEcCC
Q 012774 306 LSS---LETVACGAAPLGKDTIMAFASKFPKVVLV-QAYGLTESTAGVFRTVGPDECRRWGSTGR-LSAG-LEAKIVDPE 379 (456)
Q Consensus 306 l~~---lr~v~~gG~~~~~~~~~~~~~~~~~~~i~-~~yG~tE~~~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~i~d~~ 379 (456)
+++ +..++.||- ..-...++..+++.++. ..|++||+ .+... ..+. ..+...+. .+++ +-.+.++.+
T Consensus 296 WPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~-~~p~--~~~~~~~~~L~~~~~ffEFip~~ 368 (581)
T 4eql_A 296 WPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSET-TFGIN-LDPL--CKPEDVSYTFMPNMSYFEFIPMD 368 (581)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSC-EEEEC-SCTT--SCGGGCCEEECTTSSEEEEEECS
T ss_pred CCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccc-eeeec-cCCC--CCcccCceeecCCcEEEEEEecc
Confidence 566 555556664 33334455555678888 89999995 22221 1111 11112222 2233 445666532
Q ss_pred CC--------CCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEcc----CCcEEEecccccceeeC
Q 012774 380 TG--------DSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDE----DGFLFIVDRLKDLIKYK 447 (456)
Q Consensus 380 ~~--------~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~----dg~l~~~GR~~d~ik~~ 447 (456)
+. ..+..|+.+||+|+..+ |.| .|++||++++.. ...+.|.||.++++.+.
T Consensus 369 ~~~~~~~v~l~eVe~G~~YelViTt~~---GL~--------------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~ 431 (581)
T 4eql_A 369 GGDKNDVVDLEDVKLGCTYEPVVTNFA---GLY--------------RMRVGDIVLVTGFYNNAPQFKFVRRENVVLSID 431 (581)
T ss_dssp TTCCSSCEEGGGCCTTCEEEEEEECSS---SCC--------------SEECCEEEEEEEEETTEEEEEEEEETTEEECSS
T ss_pred ccCCCcEeCHHHcCCCceEEEEEeecc---cee--------------eEEcCCEEEEcccCCCCcEEEEEEecCCEEEee
Confidence 21 34668999999998753 222 299999999975 35899999999999999
Q ss_pred CeeecCCC
Q 012774 448 GYQVLPLL 455 (456)
Q Consensus 448 G~~v~p~e 455 (456)
|++|++.+
T Consensus 432 Gekl~~~~ 439 (581)
T 4eql_A 432 SDKTNEED 439 (581)
T ss_dssp SCCEEHHH
T ss_pred eeECCHHH
Confidence 99998754
No 38
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.76 E-value=4.6e-09 Score=103.59 Aligned_cols=126 Identities=17% Similarity=0.144 Sum_probs=78.9
Q ss_pred CCCce---EEEecCCCCCHHHHHHHHHhCCCCceE-eccCccccccccccccCCCCCCCCCcccc-ccCC-cEEEEEcCC
Q 012774 306 LSSLE---TVACGAAPLGKDTIMAFASKFPKVVLV-QAYGLTESTAGVFRTVGPDECRRWGSTGR-LSAG-LEAKIVDPE 379 (456)
Q Consensus 306 l~~lr---~v~~gG~~~~~~~~~~~~~~~~~~~i~-~~yG~tE~~~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~i~d~~ 379 (456)
++++| .++.||- ..-...++..+++.++. ..|++||+ .+... ..+ .+ .++..+. .+|+ .-.+.++.+
T Consensus 301 WPnlk~l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~-~~p-~~-~p~~~~~~L~p~~~ffEFIP~~ 373 (609)
T 4b2g_A 301 WPNTKYLDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSEC-YFGLN-LNP-MS-KPSEVSYTIMPNMAYFEFLPHE 373 (609)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSC-EEEEC-SCT-TS-CGGGCCEEECTTSCEEEEEEGG
T ss_pred CCCCcEEEEEccCCh---HHHHHHHHHHcCCCccccCcccccce-eeeee-cCC-CC-CcccCceeecCCcEEEEEEecc
Confidence 56754 4455653 22334444444577777 89999996 33322 111 11 1112222 2333 445566432
Q ss_pred CC---------------CCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEcc----CCcEEEeccc
Q 012774 380 TG---------------DSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDE----DGFLFIVDRL 440 (456)
Q Consensus 380 ~~---------------~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~----dg~l~~~GR~ 440 (456)
+. ..++.|+.+||+|+..+ |.| .|++||++++.. ...+.|.||.
T Consensus 374 ~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~~---GL~--------------RYr~GD~v~v~~f~~~~p~i~~~gR~ 436 (609)
T 4b2g_A 374 HSSIPLSRDSPPRLVDLAHVEVGKEYELVITTYA---GLY--------------RYRVGDILRVTGFHNSAPQFHFVRRK 436 (609)
T ss_dssp GTTSCCCSSSCCCCEEGGGCCTTCEEEEEEECTT---SCC--------------SEEEEEEEEEEEEETTEEEEEEEEET
T ss_pred ccccccccCCCCccccHhHcCCCCeEEEehhhhh---hhh--------------heecCCEEEEeecCCCCcEEEEEEec
Confidence 21 35678999999998653 333 299999999973 3689999999
Q ss_pred ccceeeCCeeecCCC
Q 012774 441 KDLIKYKGYQVLPLL 455 (456)
Q Consensus 441 ~d~ik~~G~~v~p~e 455 (456)
++++++.|++|++.+
T Consensus 437 ~~~l~~~Geki~~~~ 451 (609)
T 4b2g_A 437 NVLLSIDSDKTDEAE 451 (609)
T ss_dssp TCCBCSSSCCBCHHH
T ss_pred CCeEEccccCCCHHH
Confidence 999999999998764
No 39
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.65 E-value=2.3e-08 Score=98.18 Aligned_cols=127 Identities=14% Similarity=0.033 Sum_probs=77.7
Q ss_pred CCCceEE--EecCCCCCHHHHHHHHHhCCCCceE-eccCccccccccccccCCCCCCCCCccc-cccCC-cEEEEEcCCC
Q 012774 306 LSSLETV--ACGAAPLGKDTIMAFASKFPKVVLV-QAYGLTESTAGVFRTVGPDECRRWGSTG-RLSAG-LEAKIVDPET 380 (456)
Q Consensus 306 l~~lr~v--~~gG~~~~~~~~~~~~~~~~~~~i~-~~yG~tE~~~~~~~~~~~~~~~~~~~~G-~~~~~-~~~~i~d~~~ 380 (456)
++++++| +++|.. ..-...++..+++.++. ..|++||+ .+.+. ..+. ..++..+ ..+|+ .-.+.++.++
T Consensus 301 WPnl~~i~~~~~G~~--~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~-~~p~--~~~~~~~~~L~p~~~ffEFiP~~~ 374 (581)
T 4epl_A 301 FPNAKYVYGIMTGSM--EPYVPKLRHYAGDLPLVSHDYGSSEG-WIAAN-VTPR--LSPEEATFAVIPNLGYFEFLPVSE 374 (581)
T ss_dssp CTTCCCEEEECSGGG--GGGHHHHHHHHTTSCEEECCEEETTE-EEEEC-CCTT--SCTTTCCEEECTTSCEEEEEEC--
T ss_pred CCCCceEEEEeCCCh--HHHHHHHHHHcCCCccccCceeccce-eeeee-cCCC--CCccccceeecCCcEEEEEEeccc
Confidence 5677533 334422 22334555555678877 89999995 33222 1111 1112222 23333 3345554222
Q ss_pred ----------CCCCCCCCcceEEEecCCcccccCCCccccccccCCCCeeeccceEEEccC----CcEEEecccccceee
Q 012774 381 ----------GDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDED----GFLFIVDRLKDLIKY 446 (456)
Q Consensus 381 ----------~~~~~~g~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~d----g~l~~~GR~~d~ik~ 446 (456)
...++.|+.+||+|+..+ |.| .|++||++++..- ..+.|.||.++++++
T Consensus 375 ~~~~~~~~v~l~eve~G~~YelviTt~~---GL~--------------RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~ 437 (581)
T 4epl_A 375 TGEGEEKPVGLTQVKIGEEYEVVITNYA---GLY--------------RYRLGDVVKVIGFYNNTPQLKFICRRNLILSI 437 (581)
T ss_dssp -----CCCEEGGGCCTTCEEEEEEESTT---SCS--------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCS
T ss_pred ccCCCCceeeHHHcCCCCeEEEEEeecc---cee--------------eEEcCCEEEEecccCCCcEEEEEeecCCeEEe
Confidence 135778999999998753 222 3999999999642 579999999999999
Q ss_pred CCeeecCCC
Q 012774 447 KGYQVLPLL 455 (456)
Q Consensus 447 ~G~~v~p~e 455 (456)
.|++|++.+
T Consensus 438 ~Ge~~~~~~ 446 (581)
T 4epl_A 438 NIDKNTERD 446 (581)
T ss_dssp SSCCBCHHH
T ss_pred eeeECCHHH
Confidence 999998754
No 40
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=93.77 E-value=0.36 Score=46.19 Aligned_cols=99 Identities=17% Similarity=0.176 Sum_probs=75.8
Q ss_pred CCCcEEE-EC--CCC----ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCC--cHHHHHHHHHHhCCeEecCC
Q 012774 56 DDTVALI-NS--VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSI--EIPILYFSLLSLGVIISPAN 126 (456)
Q Consensus 56 p~~~A~~-~~--~~~----~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~--~~~~~~la~~~~G~~~v~l~ 126 (456)
++.+|++ +. .+| -.+|.+.+...+..+++.+.. .|+.++|++....+-+. ..+...++++..|+..++++
T Consensus 89 ~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 167 (437)
T 2y27_A 89 QDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRA-AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFG 167 (437)
T ss_dssp GGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHH-TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCC
T ss_pred hhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH-cCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCC
Confidence 5666654 32 233 258999999888888888877 89999999998887533 23445688889999999876
Q ss_pred CCCCHHHHHHHhhhcCCeEEEEccchHHHH
Q 012774 127 PVNTESEISRQIQLSNPVIAFATSSVVHKL 156 (456)
Q Consensus 127 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 156 (456)
. .+++.+...++..++.+++..+.....+
T Consensus 168 ~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l 196 (437)
T 2y27_A 168 G-GQTEKQVQLIQDFRPDIIMVTPSYMLSI 196 (437)
T ss_dssp S-CCHHHHHHHHHHHCCSEEEECHHHHHHH
T ss_pred C-CCHHHHHHHHHHhCCCEEEECHHHHHHH
Confidence 5 4788999999999999999988776554
No 41
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=93.23 E-value=0.43 Score=45.71 Aligned_cols=86 Identities=15% Similarity=0.103 Sum_probs=70.1
Q ss_pred eecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCC--cHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEE
Q 012774 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSI--EIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIA 146 (456)
Q Consensus 69 ~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~--~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 146 (456)
.+|.+.+...+..+++.+.. .|+.++|++....+-+. ..+...++++..|+..++++.. +++.+...++..++.++
T Consensus 111 ~~t~~~~~~~~~~~~~~~~~-~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l 188 (443)
T 2y4o_A 111 GYTARDIDTWANVTARSIRA-AGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKII 188 (443)
T ss_dssp EECHHHHHHHHHHHHHHHHH-TTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSEE
T ss_pred ecCHHHHHHHHHHHHHHHHH-cCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcEE
Confidence 58999999888888888877 89999999998887543 2344568888999999988654 78889999999999999
Q ss_pred EEccchHHHH
Q 012774 147 FATSSVVHKL 156 (456)
Q Consensus 147 i~~~~~~~~~ 156 (456)
+..+.....+
T Consensus 189 ~~~Ps~~~~l 198 (443)
T 2y4o_A 189 LVTPSYMLNL 198 (443)
T ss_dssp EECHHHHHHH
T ss_pred EECHHHHHHH
Confidence 9988776554
No 42
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=93.09 E-value=0.35 Score=46.20 Aligned_cols=98 Identities=19% Similarity=0.097 Sum_probs=76.2
Q ss_pred CCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCC--CcHHHHHHHHHHhCCeEecCCC
Q 012774 57 DTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNS--IEIPILYFSLLSLGVIISPANP 127 (456)
Q Consensus 57 ~~~A~~~~---~~~----~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~--~~~~~~~la~~~~G~~~v~l~~ 127 (456)
+.+|++.. .+| -.+|.+.+...+..+++.+.. .++.++|++....+-+ ...+..+++++..|+..++.+.
T Consensus 86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~ 164 (436)
T 3qov_A 86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYM-VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA 164 (436)
T ss_dssp HHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHH-TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS
T ss_pred CCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHH-cCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC
Confidence 56676532 223 358999999998888888887 8999999999888743 2344567888999999988765
Q ss_pred CCCHHHHHHHhhhcCCeEEEEccchHHHH
Q 012774 128 VNTESEISRQIQLSNPVIAFATSSVVHKL 156 (456)
Q Consensus 128 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 156 (456)
. +++.+...++..++.+++..+.....+
T Consensus 165 ~-~~~~~~~~i~~~~~t~~~~~P~~~~~l 192 (436)
T 3qov_A 165 G-NSKRQIKFISDFKTTALHAIPSYAIRL 192 (436)
T ss_dssp C-CHHHHHHHHHHHTCCEEECCHHHHHHH
T ss_pred C-CHHHHHHHHHHHCCCEEEECHHHHHHH
Confidence 4 678899999999999999988776655
No 43
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=86.10 E-value=2.4 Score=39.20 Aligned_cols=99 Identities=12% Similarity=0.026 Sum_probs=68.0
Q ss_pred CCCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCc--HHHHHHHHHHhCCeEecCC
Q 012774 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIE--IPILYFSLLSLGVIISPAN 126 (456)
Q Consensus 56 p~~~A~~~---~~~~----~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~--~~~~~la~~~~G~~~v~l~ 126 (456)
++.+|.+. +.+| ..+|.+.+...+..++..+.. .|+.++|++..+.+-+.. -....++++..|+.+++.+
T Consensus 90 ~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~-~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~ 168 (369)
T 3hgu_A 90 ADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQH-RPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID 168 (369)
T ss_dssp TTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTT-STTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC
T ss_pred ccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHh-hCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc
Confidence 56666543 2233 358999999888887777777 899999999988876332 2334455588898665543
Q ss_pred CCCCHH-----------------------HHHHHhhhcCCeEEEEccchHHHHh
Q 012774 127 PVNTES-----------------------EISRQIQLSNPVIAFATSSVVHKLA 157 (456)
Q Consensus 127 ~~~~~~-----------------------~l~~~l~~~~~~~vi~~~~~~~~~~ 157 (456)
.++. .+.+.+++.++.+++..+.....+.
T Consensus 169 --~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~ 220 (369)
T 3hgu_A 169 --IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELL 220 (369)
T ss_dssp --CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHT
T ss_pred --CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 3444 6666888889988888877766654
No 44
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=84.91 E-value=4.6 Score=39.69 Aligned_cols=98 Identities=13% Similarity=0.120 Sum_probs=72.6
Q ss_pred CCcEEEECC---CC----ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHH--HHHHHHHHhCCeEecCCC
Q 012774 57 DTVALINSV---TG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIP--ILYFSLLSLGVIISPANP 127 (456)
Q Consensus 57 ~~~A~~~~~---~~----~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~--~~~la~~~~G~~~v~l~~ 127 (456)
+.+|++... +| -.+|.+.+...+......+.. .++.++|++....+-...+- ..+++.+ .|+..+.++
T Consensus 192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~-~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~- 268 (548)
T 2d1s_A 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYG-NQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT- 268 (548)
T ss_dssp TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTS-CCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-
T ss_pred CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhc-cCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-
Confidence 778876532 22 359999998877666554433 57889999888877654433 3356777 999888775
Q ss_pred CCCHHHHHHHhhhcCCeEEEEccchHHHHh
Q 012774 128 VNTESEISRQIQLSNPVIAFATSSVVHKLA 157 (456)
Q Consensus 128 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 157 (456)
..+++.+...+++.++.+++..+.....+.
T Consensus 269 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 298 (548)
T 2d1s_A 269 KFDEETFLKTLQDYKCTSVILVPTLFAILN 298 (548)
T ss_dssp CCCHHHHHHHHHHTTEEEEEECHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCcEEEecHHHHHHHH
Confidence 568899999999999999999888777654
No 45
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=81.53 E-value=14 Score=35.51 Aligned_cols=97 Identities=10% Similarity=0.014 Sum_probs=72.3
Q ss_pred CCCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcH-HHHHHHHHHhCCeEecCCC
Q 012774 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI-PILYFSLLSLGVIISPANP 127 (456)
Q Consensus 56 p~~~A~~~~---~~~----~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~-~~~~la~~~~G~~~v~l~~ 127 (456)
++.+|++.. .+| -.+|++.+...+..+... +++.++|++...+|-.... +..+++++..|+..+..+
T Consensus 162 ~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~----~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~- 236 (501)
T 3ipl_A 162 LDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKES----LGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD- 236 (501)
T ss_dssp TTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHH----TCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred CCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHh----hCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-
Confidence 678887643 222 358999988776665433 5788999998888765432 334677888999988775
Q ss_pred CCCHHHHHHHhhhcCCeEEEEccchHHHHh
Q 012774 128 VNTESEISRQIQLSNPVIAFATSSVVHKLA 157 (456)
Q Consensus 128 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 157 (456)
..+++.+...++..++.++...+.....+.
T Consensus 237 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 266 (501)
T 3ipl_A 237 KFNAEQILTMIKNERITHISLVPQTLNWLM 266 (501)
T ss_dssp SCCHHHHHHHHHHSCCCEEEECHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCcEEEchHHHHHHHH
Confidence 478899999999999999999888776654
No 46
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=80.51 E-value=15 Score=35.91 Aligned_cols=96 Identities=17% Similarity=0.107 Sum_probs=70.9
Q ss_pred CCCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHH---HHHHHHHhCCeEecC
Q 012774 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI---LYFSLLSLGVIISPA 125 (456)
Q Consensus 56 p~~~A~~~~---~~~----~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~---~~la~~~~G~~~v~l 125 (456)
++.+|++.. .+| -.+|.+.+...+...+.. +++.++|++....|-...+-. .+++.+..|+..+..
T Consensus 190 ~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~----~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 265 (544)
T 3o83_A 190 ADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEI----CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMA 265 (544)
T ss_dssp TTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHH----TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred ccceEEEEECCCcccCCceEEechHHHHHHHHHHHHH----hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEEC
Confidence 677887643 222 359999998777665543 578899999988886655433 368888899988876
Q ss_pred CCCCCHHHHHHHhhhcCCeEEEEccchHHHH
Q 012774 126 NPVNTESEISRQIQLSNPVIAFATSSVVHKL 156 (456)
Q Consensus 126 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 156 (456)
+ ..++..+...++..++.++...+.....+
T Consensus 266 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 295 (544)
T 3o83_A 266 P-NPEPLNCFSIIQRHQVNMASLVPSAVIMW 295 (544)
T ss_dssp S-SCCHHHHHHHHHHHTCCEEEECHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHCCCEEEechHHHHHH
Confidence 5 45788888999999999999888766544
No 47
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=79.86 E-value=13 Score=36.26 Aligned_cols=96 Identities=10% Similarity=0.099 Sum_probs=71.2
Q ss_pred CCCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHH---HHHHHHHhCCeEecC
Q 012774 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI---LYFSLLSLGVIISPA 125 (456)
Q Consensus 56 p~~~A~~~~---~~~----~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~---~~la~~~~G~~~v~l 125 (456)
|+.+|++.. .+| -.+|.+.+...+..... . +++.++|++....|-...+-. .+++.+..|+..+..
T Consensus 181 ~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~---~-~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 256 (539)
T 1mdb_A 181 SSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVE---V-CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS 256 (539)
T ss_dssp TTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH---H-HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred cCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHH---h-hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence 677787543 223 36999998877665443 2 577899998888876654433 478889999998876
Q ss_pred CCCCCHHHHHHHhhhcCCeEEEEccchHHHH
Q 012774 126 NPVNTESEISRQIQLSNPVIAFATSSVVHKL 156 (456)
Q Consensus 126 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 156 (456)
+ ..+++.+...+++.++.++...+.....+
T Consensus 257 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 286 (539)
T 1mdb_A 257 P-SPSPDDAFPLIEREKVTITALVPPLAMVW 286 (539)
T ss_dssp S-SSSHHHHHHHHHHHTCSEEEECHHHHHHH
T ss_pred C-CCCHHHHHHHHHHcCCeEEEccHHHHHHH
Confidence 5 46788999999999999999988776554
No 48
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=78.72 E-value=16 Score=35.40 Aligned_cols=96 Identities=16% Similarity=0.107 Sum_probs=68.9
Q ss_pred CCCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHH--HHHHHHhCCeEecCC
Q 012774 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPIL--YFSLLSLGVIISPAN 126 (456)
Q Consensus 56 p~~~A~~~~---~~~----~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~--~la~~~~G~~~v~l~ 126 (456)
|+.+|++.. .+| -.+|.+.+...+..++.. +++.++|++...+|-....-.. +++++ .|+..+..+
T Consensus 169 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~----~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~~ 243 (517)
T 3r44_A 169 GDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWAST----IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISMP 243 (517)
T ss_dssp TTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHH----SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEECS
T ss_pred CCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHh----cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEeC
Confidence 577776532 233 359999988777665443 5788999999888866544333 45555 898888764
Q ss_pred CCCCHHHHHHHhhhcCCeEEEEccchHHHHh
Q 012774 127 PVNTESEISRQIQLSNPVIAFATSSVVHKLA 157 (456)
Q Consensus 127 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 157 (456)
..++..+...++..++.++...+.....+.
T Consensus 244 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 273 (517)
T 3r44_A 244 -QFDATKVWSLIVEERVCIGGAVPAILNFMR 273 (517)
T ss_dssp -SCCHHHHHHHHHHTTCCEEEECHHHHHHHH
T ss_pred -CCCHHHHHHHHHHhCCeEEEeHHHHHHHHH
Confidence 578889999999999999999887776553
No 49
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=77.45 E-value=10 Score=37.17 Aligned_cols=100 Identities=15% Similarity=0.099 Sum_probs=72.0
Q ss_pred CCCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcH-HHHHHHHHHhCCeEecCCC
Q 012774 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI-PILYFSLLSLGVIISPANP 127 (456)
Q Consensus 56 p~~~A~~~~---~~~----~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~-~~~~la~~~~G~~~v~l~~ 127 (456)
++.+|++.. .+| -.+|.+.+...+......+.. .++.++|++....|-...+ +...++.+..|+..+.+.
T Consensus 189 ~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~- 266 (550)
T 3rix_A 189 DKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFG-NQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY- 266 (550)
T ss_dssp TTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTS-CCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred CCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhcc-ccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-
Confidence 456776542 222 359999888776665554443 5788999998888765432 345667788899888775
Q ss_pred CCCHHHHHHHhhhcCCeEEEEccchHHHHh
Q 012774 128 VNTESEISRQIQLSNPVIAFATSSVVHKLA 157 (456)
Q Consensus 128 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 157 (456)
..+++.+...++..++.+++..+.....+.
T Consensus 267 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 296 (550)
T 3rix_A 267 RFEEELFLRSLQDYKIQSALLVPTLFSFFA 296 (550)
T ss_dssp SCCHHHHHHHHHHTTCSEEEECHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCeEEEeCcHHHHHHH
Confidence 577889999999999999999888776654
No 50
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=74.98 E-value=11 Score=36.52 Aligned_cols=98 Identities=14% Similarity=0.115 Sum_probs=71.9
Q ss_pred CCCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcH-HHHHHHHHHhCCeEecCCC
Q 012774 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI-PILYFSLLSLGVIISPANP 127 (456)
Q Consensus 56 p~~~A~~~---~~~~----~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~-~~~~la~~~~G~~~v~l~~ 127 (456)
++.+|++. +.+| -.+|.+.+...+..+... +++.++|++....+-+... +..+++++..|+..+.++.
T Consensus 142 ~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~----~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 217 (511)
T 3e7w_A 142 EHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICAD----FPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTK 217 (511)
T ss_dssp TTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHH----STTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCH
T ss_pred CCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHh----cCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcCh
Confidence 66777653 2233 359999988776655433 5778999999888866544 3457888999999887764
Q ss_pred C--CCHHHHHHHhhhcCCeEEEEccchHHHHh
Q 012774 128 V--NTESEISRQIQLSNPVIAFATSSVVHKLA 157 (456)
Q Consensus 128 ~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 157 (456)
. .++..+...++..++.+++..+.....+.
T Consensus 218 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 249 (511)
T 3e7w_A 218 DAVNKPKVLFEELKKSGLNVWTSTPSFVQMCL 249 (511)
T ss_dssp HHHHSHHHHHHHHHHHCCSEEEECHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHcCCcEEEecHHHHHHHH
Confidence 3 46788889999999999999888776653
No 51
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=74.70 E-value=12 Score=36.47 Aligned_cols=99 Identities=13% Similarity=0.074 Sum_probs=69.6
Q ss_pred CCCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHH-HHHHHHHhCCeEecCCC
Q 012774 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI-LYFSLLSLGVIISPANP 127 (456)
Q Consensus 56 p~~~A~~~---~~~~----~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~-~~la~~~~G~~~v~l~~ 127 (456)
++.+|++. +.+| -.+|.+.+...+... .+....++.++|++...+|-....-. ..++++..|+..+..++
T Consensus 175 ~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~--~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~ 252 (541)
T 1v25_A 175 ERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAA--SLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGP 252 (541)
T ss_dssp TTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHT--TSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTT
T ss_pred CCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhh--hhcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCC
Confidence 56777543 2333 358998886544331 12222578899999888876443322 45777888999888776
Q ss_pred CCCHHHHHHHhhhcCCeEEEEccchHHHH
Q 012774 128 VNTESEISRQIQLSNPVIAFATSSVVHKL 156 (456)
Q Consensus 128 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 156 (456)
..+++.+...++..++.++...+.....+
T Consensus 253 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 281 (541)
T 1v25_A 253 RLDPASLVELFDGEGVTFTAGVPTVWLAL 281 (541)
T ss_dssp CCSHHHHHHHHHHTTCCEEEECHHHHHHH
T ss_pred CCCHHHHHHHHHhcCeeEEecchHHHHHH
Confidence 67899999999999999999988776554
No 52
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=73.73 E-value=10 Score=36.68 Aligned_cols=98 Identities=12% Similarity=0.090 Sum_probs=71.2
Q ss_pred CCCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcH-HHHHHHHHHhCCeEecCCC
Q 012774 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI-PILYFSLLSLGVIISPANP 127 (456)
Q Consensus 56 p~~~A~~~~---~~~----~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~-~~~~la~~~~G~~~v~l~~ 127 (456)
++.+|++.. .+| -.+|++.+...+...... .++.++|++....|-+... +..+++.+..|+..+.++.
T Consensus 143 ~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~----~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 218 (512)
T 3fce_A 143 GDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVED----FNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDK 218 (512)
T ss_dssp TTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHH----TTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCH
T ss_pred CCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHh----cCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCH
Confidence 677776542 222 359999888766554432 5788999999988866433 3457888899999888765
Q ss_pred C--CCHHHHHHHhhhcCCeEEEEccchHHHHh
Q 012774 128 V--NTESEISRQIQLSNPVIAFATSSVVHKLA 157 (456)
Q Consensus 128 ~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 157 (456)
. .++..+...++..++.++...+.....+.
T Consensus 219 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 250 (512)
T 3fce_A 219 DMIARPKDLFASLEQSDIQVWTSTPSFAEMCL 250 (512)
T ss_dssp HHHHSHHHHHHHHHHHCCCEEEECHHHHHHHT
T ss_pred HHhhCHHHHHHHHHHcCCcEEEecHHHHHHHH
Confidence 3 56788889999999999999888776653
No 53
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=72.53 E-value=20 Score=35.25 Aligned_cols=98 Identities=14% Similarity=0.027 Sum_probs=69.1
Q ss_pred CCCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHH--HHHHHHHhCCeEecCC
Q 012774 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI--LYFSLLSLGVIISPAN 126 (456)
Q Consensus 56 p~~~A~~~~---~~~----~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~--~~la~~~~G~~~v~l~ 126 (456)
++.+|++.. .+| -.+|++ +...... ..... .++.++|++....+-+...-. .+++.+..|+..+...
T Consensus 205 ~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~--~~~~~-~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~ 280 (570)
T 3c5e_A 205 SQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAK--MDAGW-TGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHL 280 (570)
T ss_dssp TTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHH--HHTTT-TSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEEC
T ss_pred CCCcEEEEECCCCCCCCCEEEechH-HHHhhhh--hhhhh-cCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEec
Confidence 677776542 223 358888 4432111 12233 788999999888876655433 4678888899888765
Q ss_pred C-CCCHHHHHHHhhhcCCeEEEEccchHHHHh
Q 012774 127 P-VNTESEISRQIQLSNPVIAFATSSVVHKLA 157 (456)
Q Consensus 127 ~-~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 157 (456)
. ..++..+...++..++.+++..+.....+.
T Consensus 281 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 312 (570)
T 3c5e_A 281 LPKFDPLVILKTLSSYPIKSMMGAPIVYRMLL 312 (570)
T ss_dssp CSSCCHHHHHHHHHHSCCCEEEECHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCeEEeccHHHHHHHH
Confidence 3 678899999999999999999988777664
No 54
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=71.37 E-value=9.5 Score=37.26 Aligned_cols=101 Identities=13% Similarity=0.045 Sum_probs=73.3
Q ss_pred CCCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcH--HHHHHHHHHhCCeEecCC
Q 012774 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI--PILYFSLLSLGVIISPAN 126 (456)
Q Consensus 56 p~~~A~~~---~~~~----~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~--~~~~la~~~~G~~~v~l~ 126 (456)
|+.+|++. +.+| -.+|.+.+...+..........+++.++|++...+|-...+ ...+++.+..|+..+..+
T Consensus 177 ~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~ 256 (536)
T 3ni2_A 177 PDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMP 256 (536)
T ss_dssp TTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECS
T ss_pred ccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcC
Confidence 67788643 3333 36999998877665544333235788999998888765433 244678888999888775
Q ss_pred CCCCHHHHHHHhhhcCCeEEEEccchHHHHh
Q 012774 127 PVNTESEISRQIQLSNPVIAFATSSVVHKLA 157 (456)
Q Consensus 127 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 157 (456)
...++.+...++..++.++...+.....+.
T Consensus 257 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 286 (536)
T 3ni2_A 257 -KFEIGSLLGLIEKYKVSIAPVVPPVMMSIA 286 (536)
T ss_dssp -SCCHHHHHHHHHHHTCCEEEECHHHHHHHH
T ss_pred -CCCHHHHHHHHHHhCCeEEEccHHHHHHHH
Confidence 577889999999999999999887776654
No 55
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=70.24 E-value=20 Score=34.54 Aligned_cols=96 Identities=15% Similarity=0.102 Sum_probs=69.2
Q ss_pred CCCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHhhcCC--CCCCEEEEEcCCCCcHH--HHHHHHHHhCCeEec
Q 012774 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRL--SKNDTAFVLSTNSIEIP--ILYFSLLSLGVIISP 124 (456)
Q Consensus 56 p~~~A~~~~---~~~----~~~Ty~eL~~~~~~~a~~L~~~~gi--~~gd~V~l~~~~~~~~~--~~~la~~~~G~~~v~ 124 (456)
|+.+|++.. .+| -.+|.+.+...+..+.. . .++ .++|++...+|-....- ..+++.+..|+..+.
T Consensus 152 ~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~---~-~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~ 227 (504)
T 1t5h_X 152 PAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMST---Q-VGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVV 227 (504)
T ss_dssp TTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHH---T-TCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEE
T ss_pred CCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHH---h-hCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEe
Confidence 677887543 222 35899888776665443 2 566 78898888877665443 346888899999887
Q ss_pred CCCCCCHHHHHHHhhhcCCeEEEEccchHHHH
Q 012774 125 ANPVNTESEISRQIQLSNPVIAFATSSVVHKL 156 (456)
Q Consensus 125 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 156 (456)
.+. .++..+...+++.++.+++..+.....+
T Consensus 228 ~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l 258 (504)
T 1t5h_X 228 VEE-FRPVDALQLVQQEQVTSLFATPTHLDAL 258 (504)
T ss_dssp CSS-CCHHHHHHHHHHHTCCEEECCHHHHHHH
T ss_pred CCC-CCHHHHHHHHHHhCCeEEEeChHHHHHH
Confidence 754 6788889999999999999988776655
No 56
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=69.49 E-value=25 Score=34.11 Aligned_cols=98 Identities=14% Similarity=0.143 Sum_probs=69.4
Q ss_pred CCCcEEEEC---CCC----ceecHHHH-HHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHH--HHHHHHHhCCeEecC
Q 012774 56 DDTVALINS---VTG----LRVSFSEF-TRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI--LYFSLLSLGVIISPA 125 (456)
Q Consensus 56 p~~~A~~~~---~~~----~~~Ty~eL-~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~--~~la~~~~G~~~v~l 125 (456)
|+.+|++.. .+| -.+|++.+ ..... ......++.++|++....+-...+-. .++..+..|+..+.+
T Consensus 182 ~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~----~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 257 (529)
T 2v7b_A 182 CDDIAFWLYSSGSTGKPKGTVHTHANLYWTAEL----YAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILM 257 (529)
T ss_dssp TTSEEEEEEC-----CCCEEEEEHHHHHHHHHH----TCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECC
T ss_pred CCCeEEEEECCCCCCCCceEEEEhhHHHHHHHH----HhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEe
Confidence 677887543 222 35899887 33222 22233578899998888877655433 456788899999988
Q ss_pred CCCCCHHHHHHHhhhcCCeEEEEccchHHHHh
Q 012774 126 NPVNTESEISRQIQLSNPVIAFATSSVVHKLA 157 (456)
Q Consensus 126 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 157 (456)
++..+++.+...+++.++.+++..+.....+.
T Consensus 258 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 289 (529)
T 2v7b_A 258 AERPTADAIFARLVEHRPTVFYGVPTLYANML 289 (529)
T ss_dssp CSCCCHHHHHHHHHHSCCSEEEECHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhCCEEEEecHHHHHHHH
Confidence 77788999999999999999999887766553
No 57
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=69.34 E-value=39 Score=33.53 Aligned_cols=96 Identities=9% Similarity=0.080 Sum_probs=70.2
Q ss_pred CCCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHH---HHHHHHHhCCeEecC
Q 012774 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI---LYFSLLSLGVIISPA 125 (456)
Q Consensus 56 p~~~A~~~~---~~~----~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~---~~la~~~~G~~~v~l 125 (456)
++.+|++.. .+| -.+|.+.+...+...... +++.++|++....+-...+-. .+++++..|+..+..
T Consensus 183 ~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~----~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~ 258 (617)
T 3rg2_A 183 ADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEI----CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLA 258 (617)
T ss_dssp TTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHH----HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEEC
T ss_pred CCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHh----cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEe
Confidence 577887532 233 369999988776665443 467899999988886554433 368888889988876
Q ss_pred CCCCCHHHHHHHhhhcCCeEEEEccchHHHH
Q 012774 126 NPVNTESEISRQIQLSNPVIAFATSSVVHKL 156 (456)
Q Consensus 126 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 156 (456)
+. .+...+...++..++.++...+.....+
T Consensus 259 ~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l 288 (617)
T 3rg2_A 259 AD-PSATLCFPLIEKHQVNVTALVPPAVSLW 288 (617)
T ss_dssp SS-CCHHHHHHHHHHTTCCEEEECHHHHHHH
T ss_pred CC-CCHHHHHHHHHHhCCcEEEcchHHHHHH
Confidence 54 5778888899999999999988766544
No 58
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=68.65 E-value=15 Score=36.35 Aligned_cols=97 Identities=10% Similarity=0.103 Sum_probs=70.5
Q ss_pred CCCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHH--HHHHHHHhCCeEecCC
Q 012774 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI--LYFSLLSLGVIISPAN 126 (456)
Q Consensus 56 p~~~A~~~~---~~~----~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~--~~la~~~~G~~~v~l~ 126 (456)
|+.+|++.. .+| -.+|++.+...+...... +++.++|++...+|-...+-. .+++.+..|+..+..+
T Consensus 166 ~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~----~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~ 241 (590)
T 3kxw_A 166 SNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTS----FHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMS 241 (590)
T ss_dssp TTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHH----TTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECC
T ss_pred CCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHh----hCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeC
Confidence 677887643 223 359999998877665443 578899999988887765443 3788899999988876
Q ss_pred CCC---CHHHHHHHhhhcCCeEEEEccchHHHH
Q 012774 127 PVN---TESEISRQIQLSNPVIAFATSSVVHKL 156 (456)
Q Consensus 127 ~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~ 156 (456)
+.. .+..+...++..++.++...+.....+
T Consensus 242 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 274 (590)
T 3kxw_A 242 PFSFLQNPLSWLKHITKYKATISGSPNFAYDYC 274 (590)
T ss_dssp HHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHH
T ss_pred HHHHHHCHHHHHHHHHHhCCeeecCChhHHHHH
Confidence 532 567788888999999888876655443
No 59
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=65.31 E-value=27 Score=34.31 Aligned_cols=97 Identities=14% Similarity=0.098 Sum_probs=70.5
Q ss_pred CCCcEEEECC---CC----ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCC-cHHHHHHHHHHhCCeEecCCC
Q 012774 56 DDTVALINSV---TG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSI-EIPILYFSLLSLGVIISPANP 127 (456)
Q Consensus 56 p~~~A~~~~~---~~----~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~-~~~~~~la~~~~G~~~v~l~~ 127 (456)
|+.+|++... +| -.+|.+.+...... ... .++.++|++..+.+-+. -....+++.+..|+..+..+.
T Consensus 213 ~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~----~~~-~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 287 (570)
T 4gr5_A 213 PEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG----QDY-AGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSG 287 (570)
T ss_dssp TTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS----CCS-SCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSS
T ss_pred CCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh----hhh-cCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCC
Confidence 7788876532 22 36899887543321 233 67889999998888654 345567888899998887654
Q ss_pred -CCCHHHHHHHhhhcCCeEEEEccchHHHHh
Q 012774 128 -VNTESEISRQIQLSNPVIAFATSSVVHKLA 157 (456)
Q Consensus 128 -~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 157 (456)
..++..+...+++.++.++...+.....+.
T Consensus 288 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~ 318 (570)
T 4gr5_A 288 QNPDPLEIGELVARHGVTMLQLSASLFNFLV 318 (570)
T ss_dssp SSCCHHHHHHHHHHHTCCEEEEEHHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCcEEEecHHHHHHHH
Confidence 567889999999999999999887776654
No 60
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=63.92 E-value=40 Score=32.53 Aligned_cols=100 Identities=16% Similarity=0.098 Sum_probs=70.6
Q ss_pred CCCcEEEECC---CC----ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcH-HHHHHHHHHhCCeEecCCC
Q 012774 56 DDTVALINSV---TG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI-PILYFSLLSLGVIISPANP 127 (456)
Q Consensus 56 p~~~A~~~~~---~~----~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~-~~~~la~~~~G~~~v~l~~ 127 (456)
++.+|++... +| -.+|.+.+...+..+.... . .++.+++++....+-+... +..+++++..|+..+.++.
T Consensus 144 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~ 221 (521)
T 3l8c_A 144 GDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA-A-FDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPK 221 (521)
T ss_dssp TTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT-T-TCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCG
T ss_pred CCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc-c-cCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCH
Confidence 6777775432 22 3599999987766554432 2 4678888888777765544 4556778889998887765
Q ss_pred C--CCHHHHHHHhhhcCCeEEEEccchHHHHh
Q 012774 128 V--NTESEISRQIQLSNPVIAFATSSVVHKLA 157 (456)
Q Consensus 128 ~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 157 (456)
. .....+...+...++.++...+.....+.
T Consensus 222 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 253 (521)
T 3l8c_A 222 ELVADFKQLFTTIAQLPVGIWTSTPSFADMAM 253 (521)
T ss_dssp GGTTCHHHHHHHHHHSCCSEEEECHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHh
Confidence 3 47788889999999999998887766543
No 61
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=63.11 E-value=28 Score=34.66 Aligned_cols=96 Identities=19% Similarity=0.144 Sum_probs=70.1
Q ss_pred CCCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHH-HHHHHHHHhCCeEecCC-
Q 012774 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIP-ILYFSLLSLGVIISPAN- 126 (456)
Q Consensus 56 p~~~A~~~---~~~~----~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~-~~~la~~~~G~~~v~l~- 126 (456)
|+.+|++- +.+| -.+|.+.+...+.. ... .++.++|++....+-+.+.- ..+++.+..|+..+..+
T Consensus 163 ~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~----~~~-~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 237 (620)
T 4dg8_A 163 ADQIAYINFSSGTTGRPKAIACTHAGITRLCLG----QSF-LAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDL 237 (620)
T ss_dssp TTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS----CGG-GTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCS
T ss_pred CCCeEEEEECCCccccCeEEEEchHHHHHHHHH----HHh-hCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCcc
Confidence 67778653 3333 36999887654322 233 68899999999888765543 34678888999887764
Q ss_pred CCCCHHHHHHHhhhcCCeEEEEccchHHHH
Q 012774 127 PVNTESEISRQIQLSNPVIAFATSSVVHKL 156 (456)
Q Consensus 127 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 156 (456)
...+++.+...++..++..+...+.....+
T Consensus 238 ~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l 267 (620)
T 4dg8_A 238 GPLDPGVLRQLIGERGADSAWLTASLFNTL 267 (620)
T ss_dssp SSCCHHHHHHHHHTTCCCEEEEEHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCcEEEccHHHHHHH
Confidence 356889999999999999999888776655
No 62
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=61.68 E-value=53 Score=31.58 Aligned_cols=95 Identities=14% Similarity=0.121 Sum_probs=66.7
Q ss_pred CCCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcH--HHHHHHHHHhCCeEecCC
Q 012774 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI--PILYFSLLSLGVIISPAN 126 (456)
Q Consensus 56 p~~~A~~~---~~~~----~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~--~~~~la~~~~G~~~v~l~ 126 (456)
++.+|++. +.+| -.+|.+.+...+..+... +++.++|++...++-.... +..+++.+..|+..+..+
T Consensus 154 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~----~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~ 229 (505)
T 3nyq_A 154 DGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADA----WQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLG 229 (505)
T ss_dssp TTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHH----HTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECS
T ss_pred CCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHH----hCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECC
Confidence 67777653 2333 369999998887766554 4678899888777754433 334788899999988775
Q ss_pred CCCCHHHHHHHhhhcCCeEEEEccchHHHH
Q 012774 127 PVNTESEISRQIQLSNPVIAFATSSVVHKL 156 (456)
Q Consensus 127 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 156 (456)
...++.+...+ ..++.+++..+.....+
T Consensus 230 -~~~~~~~~~~i-~~~~t~~~~~P~~~~~l 257 (505)
T 3nyq_A 230 -RFSTEGAAREL-NDGATMLFGVPTMYHRI 257 (505)
T ss_dssp -SCCHHHHHHHH-TTTCCEEEECHHHHHHH
T ss_pred -CCChHHHHHHH-hhCCeEEEehHHHHHHH
Confidence 56667777777 66888888887766544
No 63
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=61.38 E-value=26 Score=37.14 Aligned_cols=100 Identities=12% Similarity=0.051 Sum_probs=72.4
Q ss_pred CCCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcH--HHHHHHHHHhCCeEecCC
Q 012774 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI--PILYFSLLSLGVIISPAN 126 (456)
Q Consensus 56 p~~~A~~~~---~~~----~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~--~~~~la~~~~G~~~v~l~ 126 (456)
|+.+|++.. .+| -.+|.+.+...+..........+++.++|++....|-...+ ...+++.+..|+..+..+
T Consensus 224 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~ 303 (979)
T 3tsy_A 224 PDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMP 303 (979)
T ss_dssp TTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECS
T ss_pred ccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeC
Confidence 788887643 222 36999998877665544333235788999998887755433 344678888999888764
Q ss_pred CCCCHHHHHHHhhhcCCeEEEEccchHHHH
Q 012774 127 PVNTESEISRQIQLSNPVIAFATSSVVHKL 156 (456)
Q Consensus 127 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 156 (456)
...++.+...++..++.++...+.....+
T Consensus 304 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 332 (979)
T 3tsy_A 304 -KFEINLLLELIQRCKVTVAPMVPPIVLAI 332 (979)
T ss_dssp -SCCHHHHHHHHHHHTCCEEEECHHHHHHH
T ss_pred -CCCHHHHHHHHHHhCCeEEEcHHHHHHHH
Confidence 56788999999999999999888776655
No 64
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=60.94 E-value=23 Score=34.56 Aligned_cols=96 Identities=19% Similarity=0.151 Sum_probs=71.1
Q ss_pred CCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcH-HHHHHHHHHhCCeEecCCCC
Q 012774 57 DTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI-PILYFSLLSLGVIISPANPV 128 (456)
Q Consensus 57 ~~~A~~~---~~~~----~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~-~~~~la~~~~G~~~v~l~~~ 128 (456)
+.+|++. +.+| -.+|.+.+...+..++.. .++.++|++....|-.... +..++.++..|+..+.++ .
T Consensus 180 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~----~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~-~ 254 (549)
T 3g7s_A 180 EDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVA----TGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMG-M 254 (549)
T ss_dssp TSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHH----HCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEES-S
T ss_pred CCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHH----cCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcC-C
Confidence 6777643 3333 369999998887766543 4778999998887765443 233667788899888775 6
Q ss_pred CCHHHHHHHhhhcCCeEEEEccchHHHHh
Q 012774 129 NTESEISRQIQLSNPVIAFATSSVVHKLA 157 (456)
Q Consensus 129 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 157 (456)
.+++.+...++..++.+++..+.....+.
T Consensus 255 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 283 (549)
T 3g7s_A 255 FNQEMLAENIEKYKGTFSWAVPPALNVLV 283 (549)
T ss_dssp CCHHHHHHHHHHTTCCEEEECHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCeEEEeCCHHHHHHH
Confidence 78889999999999999999887766553
No 65
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=58.70 E-value=37 Score=33.32 Aligned_cols=97 Identities=13% Similarity=0.077 Sum_probs=66.9
Q ss_pred CCCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcH-HHHHHHHHHhCCeEecCCC
Q 012774 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI-PILYFSLLSLGVIISPANP 127 (456)
Q Consensus 56 p~~~A~~~~---~~~----~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~-~~~~la~~~~G~~~v~l~~ 127 (456)
++.+|++.. .+| -.+|.+.+...+..++ ..+++.++|++....+-.... +..++..+..|+..+.++.
T Consensus 181 ~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~----~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 256 (563)
T 1amu_A 181 STDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFE----NSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILK 256 (563)
T ss_dssp TTSEEEEEEEC-----CEEEEEESHHHHHHHHHHH----HTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCH
T ss_pred CCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHH----HhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcCh
Confidence 667776532 233 3589998876554432 336889999998888765543 3346778888998887754
Q ss_pred C--CCHHHHHHHhhhcCCeEEEEccchHHHH
Q 012774 128 V--NTESEISRQIQLSNPVIAFATSSVVHKL 156 (456)
Q Consensus 128 ~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 156 (456)
. .++..+...++..++.++...+.....+
T Consensus 257 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 287 (563)
T 1amu_A 257 DTINDFVKFEQYINQKEITVITLPPTYVVHL 287 (563)
T ss_dssp HHHTCHHHHHHHHHHTTCCEEEECHHHHTTS
T ss_pred HhhcCHHHHHHHHHHcCCcEEEeCHHHHHHH
Confidence 2 5678888999999999998877665443
No 66
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=58.41 E-value=61 Score=31.07 Aligned_cols=96 Identities=14% Similarity=0.086 Sum_probs=65.5
Q ss_pred CCCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHH--HHHHHHHHhCCeEecCC
Q 012774 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIP--ILYFSLLSLGVIISPAN 126 (456)
Q Consensus 56 p~~~A~~~---~~~~----~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~--~~~la~~~~G~~~v~l~ 126 (456)
++.+|++. +.+| -.+|.+.+...+..+... +++.++|++...+|-...+- ..+.+++..|..+++.
T Consensus 159 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~----~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~- 233 (509)
T 3ivr_A 159 AADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDA----WRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAA- 233 (509)
T ss_dssp TTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHH----TTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred ccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHh----hCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEec-
Confidence 66777653 3334 369999998776665443 57889999998887654432 2333344555555443
Q ss_pred CCCCHHHHHHHhhhcCCeEEEEccchHHHHh
Q 012774 127 PVNTESEISRQIQLSNPVIAFATSSVVHKLA 157 (456)
Q Consensus 127 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 157 (456)
..+++.+...++..++.++...+.....+.
T Consensus 234 -~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~ 263 (509)
T 3ivr_A 234 -KFDPAQAARDIEAHKVTVMAEFAPMLGNIL 263 (509)
T ss_dssp -SCCHHHHHHHHHHHTCCEEEEETTHHHHHH
T ss_pred -ccCHHHHHHHHHHHCCcEEEecHHHHHHHH
Confidence 678899999999999999998887776653
No 67
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=58.26 E-value=22 Score=33.86 Aligned_cols=93 Identities=13% Similarity=0.019 Sum_probs=64.4
Q ss_pred CCCcEEEECC---C----CceecHHHHHHHHHHHHHHhHhhcCCCC------CCEEEEEcCCCCcH--HHHHHHHHHhCC
Q 012774 56 DDTVALINSV---T----GLRVSFSEFTRRTNSLASYLQNVTRLSK------NDTAFVLSTNSIEI--PILYFSLLSLGV 120 (456)
Q Consensus 56 p~~~A~~~~~---~----~~~~Ty~eL~~~~~~~a~~L~~~~gi~~------gd~V~l~~~~~~~~--~~~~la~~~~G~ 120 (456)
++.+|++... + +-.+|++.+...+..+...+ ++.+ +|++...+|-...+ ...+++.+..|+
T Consensus 182 ~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~----~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~ 257 (480)
T 3t5a_A 182 YPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY----FADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGY 257 (480)
T ss_dssp CCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH----CTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTC
T ss_pred CCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh----ccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCC
Confidence 6778876532 2 24699999988877766654 3344 88888888766543 456788999999
Q ss_pred eEecCCCC---CCHHHHHHHhhhcCCeEEEEccchH
Q 012774 121 IISPANPV---NTESEISRQIQLSNPVIAFATSSVV 153 (456)
Q Consensus 121 ~~v~l~~~---~~~~~l~~~l~~~~~~~vi~~~~~~ 153 (456)
..+..++. ..+..+.+.++..++. +...+...
T Consensus 258 ~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~ 292 (480)
T 3t5a_A 258 PAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFA 292 (480)
T ss_dssp CEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHH
T ss_pred ceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHH
Confidence 98887654 3667788888888888 44444443
No 68
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=53.59 E-value=39 Score=33.85 Aligned_cols=99 Identities=12% Similarity=0.138 Sum_probs=68.8
Q ss_pred CCCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHH--HHHHHHHHhCCeEecCC
Q 012774 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIP--ILYFSLLSLGVIISPAN 126 (456)
Q Consensus 56 p~~~A~~~---~~~~----~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~--~~~la~~~~G~~~v~l~ 126 (456)
++.+|++- +.+| -.+|.+.+...+.. .+...+++.++|++....+-+...- ..+++.+..|+..+..+
T Consensus 255 ~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~ 331 (652)
T 1pg4_A 255 AEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAT---TFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFE 331 (652)
T ss_dssp TTSEEEEEEECCSSSSCEEEEEESHHHHHHHHH---HHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEEC
T ss_pred CCCCEEEEeccCCCCCCceEEECchHHHHHHHH---HHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEEC
Confidence 56777653 2333 35888877654432 2222267889999888777655443 34678899999988876
Q ss_pred CC---CCHHHHHHHhhhcCCeEEEEccchHHHHh
Q 012774 127 PV---NTESEISRQIQLSNPVIAFATSSVVHKLA 157 (456)
Q Consensus 127 ~~---~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 157 (456)
.. .++..+...+++.++.++.+.+.....+.
T Consensus 332 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~ 365 (652)
T 1pg4_A 332 GVPNWPTPARMCQVVDKHQVNILYTAPTAIRALM 365 (652)
T ss_dssp SCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHH
Confidence 42 46788999999999999999888776654
No 69
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=51.33 E-value=39 Score=32.99 Aligned_cols=98 Identities=7% Similarity=0.046 Sum_probs=69.3
Q ss_pred CCCcEEEECC---CC----ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcH--HHHHHHHHHhCCeEecCC
Q 012774 56 DDTVALINSV---TG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI--PILYFSLLSLGVIISPAN 126 (456)
Q Consensus 56 p~~~A~~~~~---~~----~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~--~~~~la~~~~G~~~v~l~ 126 (456)
|+.+|++... +| -.+|.+.+...+..+... . .++.++|++...+|-...+ ...+++.+..|+..+.+.
T Consensus 175 ~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~--~-~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~ 251 (576)
T 3gqw_A 175 PNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHD--G-IKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLR 251 (576)
T ss_dssp TTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHT--T-SCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECC
T ss_pred CCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhc--c-cCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcc
Confidence 6788877542 22 369999988766554332 2 5788999999888766543 345677788888887765
Q ss_pred C---CCCHHHHHHHhhhcCCeEEEEccchHHHH
Q 012774 127 P---VNTESEISRQIQLSNPVIAFATSSVVHKL 156 (456)
Q Consensus 127 ~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 156 (456)
+ ...+..+...++..++.+++..+.....+
T Consensus 252 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 284 (576)
T 3gqw_A 252 TQDFAMRPLQWLKLISKNRGTVSVAPPFGYELC 284 (576)
T ss_dssp HHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHH
T ss_pred hhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHH
Confidence 4 23556788899999999999887665443
No 70
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=50.15 E-value=94 Score=25.92 Aligned_cols=82 Identities=11% Similarity=0.064 Sum_probs=48.7
Q ss_pred hhHhhHHHHH-HHhHhcceEEEe-cCCCHHHHHHHHHHhcceeEEe--c----HHH--HHHHhcCCCCCCCCCCCceEEE
Q 012774 244 FHIYGLFFCF-RAAALMETAVVM-QRFDLKMMLKAVEEFRVTHAAV--T----PPI--VVAMSKGGSTDGYDLSSLETVA 313 (456)
Q Consensus 244 ~~~~g~~~~~-~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~--~----P~~--~~~l~~~~~~~~~~l~~lr~v~ 313 (456)
.|..|...+- ..-..|-.++.. ....++.+.+.+.+++++++.+ + ++. +..+.+..+..... ..+ .++
T Consensus 104 ~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~~-~~v-~v~ 181 (215)
T 3ezx_A 104 IHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEEKLR-DSV-KCM 181 (215)
T ss_dssp CCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHTTCG-GGS-EEE
T ss_pred hhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHcCCC-CCC-EEE
Confidence 4777774443 334456666655 4578999999999999998877 2 221 22222221111110 123 378
Q ss_pred ecCCCCCHHHHHHH
Q 012774 314 CGAAPLGKDTIMAF 327 (456)
Q Consensus 314 ~gG~~~~~~~~~~~ 327 (456)
+||.+++++..+++
T Consensus 182 vGG~~~~~~~a~~i 195 (215)
T 3ezx_A 182 FGGAPVSDKWIEEI 195 (215)
T ss_dssp EESSSCCHHHHHHH
T ss_pred EECCCCCHHHHHHh
Confidence 89999998765543
No 71
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=50.06 E-value=44 Score=30.47 Aligned_cols=94 Identities=9% Similarity=0.099 Sum_probs=62.4
Q ss_pred CCCcEEE---ECCCC----ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcH-HHHHHHHHHhCCeEecCCC
Q 012774 56 DDTVALI---NSVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI-PILYFSLLSLGVIISPANP 127 (456)
Q Consensus 56 p~~~A~~---~~~~~----~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~-~~~~la~~~~G~~~v~l~~ 127 (456)
.|.+|++ .+.+| -.+|++.+...+..++.. +++.++|++...+|-.... +..++..+..|+..+..++
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~----~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~ 111 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKA----LSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEP 111 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHH----TTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHH----hCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCc
Confidence 4566764 34444 369999988776655443 5789999999888765432 3345556677887776665
Q ss_pred CCCHHHHHHHhhhcCCeEEEEccchHHHH
Q 012774 128 VNTESEISRQIQLSNPVIAFATSSVVHKL 156 (456)
Q Consensus 128 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 156 (456)
.... ...++..++.++...+.....+
T Consensus 112 ~~~~---~~~i~~~~~t~~~~~P~~l~~l 137 (358)
T 4gs5_A 112 TANP---LAGLDHADFDFVAMVPMQLQSI 137 (358)
T ss_dssp CSCT---TTTCSSCCCSEEEECHHHHHHH
T ss_pred cccH---HHHHHHhCCeEEEcChHHHHHh
Confidence 4432 3457778888888877766555
No 72
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=49.31 E-value=60 Score=31.89 Aligned_cols=98 Identities=5% Similarity=0.011 Sum_probs=67.9
Q ss_pred CCCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHH--HHHHHHHhCCeEecCC
Q 012774 56 DDTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI--LYFSLLSLGVIISPAN 126 (456)
Q Consensus 56 p~~~A~~~~---~~~----~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~--~~la~~~~G~~~v~l~ 126 (456)
++.+|++.. .+| -.+|...+...+.. .... .++.+++++....+....... .+++.+..|+..+..+
T Consensus 224 ~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 299 (580)
T 3etc_A 224 NEDICLVYFSSGTAGFPKMVEHDNTYPLGHILT---AKYW-QNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYD 299 (580)
T ss_dssp TTSEEEEEEECCSSSSCEEEEEETTHHHHHHHH---HHTT-SCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEE
T ss_pred CCCcEEEEEeCCCCCCccEEEeccHHHHHHHHH---HHHh-hCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEec
Confidence 677776542 233 24666544433222 2222 578899988887776655433 3688899999888775
Q ss_pred -CCCCHHHHHHHhhhcCCeEEEEccchHHHHh
Q 012774 127 -PVNTESEISRQIQLSNPVIAFATSSVVHKLA 157 (456)
Q Consensus 127 -~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 157 (456)
...+++.+...+++.++.++...+.....+.
T Consensus 300 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~ 331 (580)
T 3etc_A 300 YDRFEAKNMLEKASKYGVTTFCAPPTIYRFLI 331 (580)
T ss_dssp CSSCCHHHHHHHHHHHTCCEEEECHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHCCeEEEccHHHHHHHH
Confidence 5678899999999999999999888776654
No 73
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=44.90 E-value=58 Score=31.76 Aligned_cols=88 Identities=13% Similarity=0.161 Sum_probs=64.0
Q ss_pred eecHHHHHHHHHHHHHHhHh----hcCCCCCCEEEEEcCCCCcHH-HHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCC
Q 012774 69 RVSFSEFTRRTNSLASYLQN----VTRLSKNDTAFVLSTNSIEIP-ILYFSLLSLGVIISPANPVNTESEISRQIQLSNP 143 (456)
Q Consensus 69 ~~Ty~eL~~~~~~~a~~L~~----~~gi~~gd~V~l~~~~~~~~~-~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~ 143 (456)
.+|++.+...+..++..+.. ...+...+++....+...... ..++..+..|+..+........+.+...++..++
T Consensus 194 ~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~ 273 (562)
T 3ite_A 194 RVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGV 273 (562)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTC
T ss_pred EECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCC
Confidence 59999999888887776542 135677888877777665443 3467788889888876544445667788999999
Q ss_pred eEEEEccchHHHH
Q 012774 144 VIAFATSSVVHKL 156 (456)
Q Consensus 144 ~~vi~~~~~~~~~ 156 (456)
.++...+.....+
T Consensus 274 t~~~~~P~~l~~~ 286 (562)
T 3ite_A 274 THAGIVPSLLDQT 286 (562)
T ss_dssp CEEEECHHHHHHH
T ss_pred CEEEcCHHHHhhc
Confidence 9999888776654
No 74
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=44.48 E-value=1.6e+02 Score=29.40 Aligned_cols=95 Identities=14% Similarity=0.132 Sum_probs=66.9
Q ss_pred CCCCEEEEEcCCCCCCCCchhcccHHHHHHHHHH---hcc-CCCCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEe
Q 012774 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVAS---SFA-SSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVM 265 (456)
Q Consensus 190 ~~~~~a~i~~TSGtTG~PK~V~~th~~l~~~~~~---~~~-~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~ 265 (456)
.++.+|++.... .+|. ...+|.+.+...+.. ... .. +..++|++...+|...- ....+++++..|+..+.+
T Consensus 95 ~pd~~Al~~~~~-~~~~--~~~~TY~eL~~~v~~lA~~L~~~~-Gv~~Gd~V~i~~~~~~e-~v~a~lA~~~~Gav~vpl 169 (663)
T 1ry2_A 95 TPNKKAIIFEGD-EPGQ--GYSITYKELLEEVCQVAQVLTYSM-GVRKGDTVAVYMPMVPE-AIITLLAISRIGAIHSVV 169 (663)
T ss_dssp CTTSEEEEEECS-STTC--CEEEEHHHHHHHHHHHHHHHHHTS-CCCTTCEEEECCCSSHH-HHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEEEcC-CCCc--eEEEEHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEcCCCHH-HHHHHHHHHHcCCEEEee
Confidence 456777765422 1221 235888877554443 333 44 67899999999997543 346778889999987777
Q ss_pred c-CCCHHHHHHHHHHhcceeEEecH
Q 012774 266 Q-RFDLKMMLKAVEEFRVTHAAVTP 289 (456)
Q Consensus 266 ~-~~~~~~~~~~i~~~~~t~~~~~P 289 (456)
. .+.++.+...|++.++.+++...
T Consensus 170 ~~~~~~~~l~~~l~~~~~~~li~~~ 194 (663)
T 1ry2_A 170 FAGFSSNSLRDRINDGDSKVVITTD 194 (663)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEEES
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEcc
Confidence 4 68899999999999999988754
No 75
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=39.35 E-value=76 Score=34.86 Aligned_cols=97 Identities=15% Similarity=0.173 Sum_probs=70.5
Q ss_pred CCCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHH-HHHHHHHhCCeEecCCC
Q 012774 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI-LYFSLLSLGVIISPANP 127 (456)
Q Consensus 56 p~~~A~~~---~~~~----~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~-~~la~~~~G~~~v~l~~ 127 (456)
|+.+|++- +.+| -.+|.+.+... ...... +++.++|++..+.+-+.+..+ -+++.+..|+..+..++
T Consensus 606 ~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~----~~~~~~-~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~ 680 (1304)
T 2vsq_A 606 PNDPAYIMYTSGTTGKPKGNITTHANIQGL----VKHVDY-MAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADE 680 (1304)
T ss_dssp TTSEEEEEEECCSSSSCEEEEEEHHHHHHH----HSSCCS-SCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCG
T ss_pred CCCeEEEEeCCCCCCCCCEEEEehHHHHHH----HHHHHh-cCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECCh
Confidence 67788653 3333 35999888643 222333 688999999888877765543 47788889998888765
Q ss_pred --CCCHHHHHHHhhhcCCeEEEEccchHHHHh
Q 012774 128 --VNTESEISRQIQLSNPVIAFATSSVVHKLA 157 (456)
Q Consensus 128 --~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 157 (456)
..++..+...++..++.++...+.....+.
T Consensus 681 ~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~ 712 (1304)
T 2vsq_A 681 HTLLDTERLTDLILQENVNVMFATTALFNLLT 712 (1304)
T ss_dssp GGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHcCCcEEEccHHHHHHHH
Confidence 467889999999999999998887766553
No 76
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=39.16 E-value=88 Score=28.18 Aligned_cols=62 Identities=11% Similarity=-0.003 Sum_probs=44.5
Q ss_pred cC-CCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEccc
Q 012774 90 TR-LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSS 151 (456)
Q Consensus 90 ~g-i~~gd~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 151 (456)
.| +++|+.|.+....+-.-..+-++|...|..++.+-|...+..-...++..++++++++..
T Consensus 65 ~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 65 EGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp TTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred cCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 35 488888756666666777777888888987666545444455566788999999999754
No 77
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=37.79 E-value=1.1e+02 Score=29.19 Aligned_cols=79 Identities=6% Similarity=-0.038 Sum_probs=58.9
Q ss_pred cccHHHHHHHHHHhccCC--CCCCCCcEEEEecchhhHhhHHHHHHHhHhcceEEEec-CCCHHHHHHHHHHhcceeEEe
Q 012774 211 MLTHRNLTAAVASSFASS--PKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ-RFDLKMMLKAVEEFRVTHAAV 287 (456)
Q Consensus 211 ~~th~~l~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~ 287 (456)
.+|.+.+...+......+ .+..++|++...++-.. -....+++.+..|+..+.+. ....+++...+++.++..++.
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~ 106 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSV-EALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVC 106 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCH-HHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCH-HHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEE
Confidence 478888865554433332 26788999998888653 23467788889999888875 578899999999999999988
Q ss_pred cHH
Q 012774 288 TPP 290 (456)
Q Consensus 288 ~P~ 290 (456)
.+.
T Consensus 107 ~~~ 109 (503)
T 4fuq_A 107 DPS 109 (503)
T ss_dssp CGG
T ss_pred Cch
Confidence 764
No 78
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=34.06 E-value=70 Score=29.28 Aligned_cols=60 Identities=12% Similarity=-0.018 Sum_probs=38.1
Q ss_pred HhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEecCCC-----CCCHHHHHHHhhhcC--CeEEEE
Q 012774 85 YLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANP-----VNTESEISRQIQLSN--PVIAFA 148 (456)
Q Consensus 85 ~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~-----~~~~~~l~~~l~~~~--~~~vi~ 148 (456)
.|.. +++++||.|.+-.+.... ..-++...|+.++.++. ..+.+.++..+..-+ .++|+.
T Consensus 69 al~~-l~~~~Gd~Vi~~~~~~~~---~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~ 135 (377)
T 3ju7_A 69 AIQL-KKRKKGKYALMPSFTFPA---TPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVP 135 (377)
T ss_dssp HHHH-HSCTTCCEEEEESSSCTH---HHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECC
T ss_pred HHHH-cCCCCcCEEEECCCCcHH---HHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEE
Confidence 3444 567899998876554333 34456778987665543 247888888774333 666663
No 79
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=31.97 E-value=1.4e+02 Score=27.01 Aligned_cols=92 Identities=11% Similarity=0.049 Sum_probs=59.8
Q ss_pred CcEEEECCCCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHH
Q 012774 58 TVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQ 137 (456)
Q Consensus 58 ~~A~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~ 137 (456)
++.+-....+.+=||++-- ....+.....+ --+++|.+..+....+-.-..+-++|.+.|..+..+=|...+......
T Consensus 51 ~IylK~E~lnptGSfK~Rg-A~~~i~~a~~~-g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~ 128 (344)
T 3vc3_A 51 YVAVKQEMMQPTASIADRP-AYAMITDAEEK-NLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVT 128 (344)
T ss_dssp EEEEEEGGGSTTSBTTHHH-HHHHHHHHHHT-TCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHH
T ss_pred EEEEEecCCCCCCCcHHHH-HHHHHHHHHHc-CCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHH
Confidence 3444444334455665422 12333333433 336778776677777777888888999999977766666666666778
Q ss_pred hhhcCCeEEEEccc
Q 012774 138 IQLSNPVIAFATSS 151 (456)
Q Consensus 138 l~~~~~~~vi~~~~ 151 (456)
++..++++++++..
T Consensus 129 ~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 129 MRAFGAELILTDPA 142 (344)
T ss_dssp HHHTTCEEEEECGG
T ss_pred HHHcCCEEEEECCC
Confidence 89999999998753
No 80
>4hlb_A Uncharacterized protein; alpha-lytic protease prodomain-like fold, structural genomic center for structural genomics, JCSG; 1.80A {Desulfovibrio piger}
Probab=31.11 E-value=1.2e+02 Score=20.53 Aligned_cols=37 Identities=11% Similarity=0.064 Sum_probs=31.9
Q ss_pred CCceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEc
Q 012774 66 TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLS 102 (456)
Q Consensus 66 ~~~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~ 102 (456)
.++.+|.+|+...+.+--+.|.++.|+.+.-.|+-++
T Consensus 60 adrkmtraefsaiasrsirelkerfgfdkdvpigavl 96 (115)
T 4hlb_A 60 ADRKMTRAEFSAIASRSIRELKERFGFDKDVPIGAVL 96 (115)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEE
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHhCCCcCCccceeE
Confidence 3789999999999999999999989998887776554
No 81
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=30.86 E-value=1.2e+02 Score=27.81 Aligned_cols=61 Identities=13% Similarity=0.073 Sum_probs=38.9
Q ss_pred cCCCCCCEEEEEcCCCCc------HHHHHHHHH-HhCCeEecCCCCC------------CHHHHHHHhhhcCCeEEEEcc
Q 012774 90 TRLSKNDTAFVLSTNSIE------IPILYFSLL-SLGVIISPANPVN------------TESEISRQIQLSNPVIAFATS 150 (456)
Q Consensus 90 ~gi~~gd~V~l~~~~~~~------~~~~~la~~-~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~vi~~~ 150 (456)
--+++||+|+|++|.+.- -+-.-...+ ..|..++.-.... ..++|...+.+-++++|++..
T Consensus 38 ~~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 38 APLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CCCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 358899999999998753 222222233 3587766543211 235677777778889999864
No 82
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=28.61 E-value=1.1e+02 Score=27.43 Aligned_cols=60 Identities=12% Similarity=0.160 Sum_probs=37.9
Q ss_pred CCCCCCEEEEEcCCCC------cHHHHHHH-HHHhCCeEecCCCCC------------CHHHHHHHhhhcCCeEEEEcc
Q 012774 91 RLSKNDTAFVLSTNSI------EIPILYFS-LLSLGVIISPANPVN------------TESEISRQIQLSNPVIAFATS 150 (456)
Q Consensus 91 gi~~gd~V~l~~~~~~------~~~~~~la-~~~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~vi~~~ 150 (456)
-+++||+|+|++|.+. +.+-.-.. +-..|..++.-..-. ..+++...+.+-++++|++..
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 4789999999999864 12222222 223477666543211 235677778888899999864
No 83
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=26.92 E-value=66 Score=19.80 Aligned_cols=21 Identities=14% Similarity=0.107 Sum_probs=16.0
Q ss_pred HhHhhcCCCCCCEEEEEcCCC
Q 012774 85 YLQNVTRLSKNDTAFVLSTNS 105 (456)
Q Consensus 85 ~L~~~~gi~~gd~V~l~~~~~ 105 (456)
.+++++|+++||.|.+...+.
T Consensus 19 ~ir~~lgi~~Gd~v~i~~~~~ 39 (53)
T 2l66_A 19 KVRQKFQIKEGDLVKVTFDES 39 (53)
T ss_dssp HHHHHSCCCTTCEEEEEECSS
T ss_pred HHHHHcCcCCCCEEEEEEECC
Confidence 455569999999999876543
No 84
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=26.21 E-value=1.7e+02 Score=26.32 Aligned_cols=60 Identities=18% Similarity=0.168 Sum_probs=38.2
Q ss_pred CCCCCCEEEEEcCCCCcH------HHHHHHHH-HhCCeEecCCCCC------------CHHHHHHHhhhcCCeEEEEcc
Q 012774 91 RLSKNDTAFVLSTNSIEI------PILYFSLL-SLGVIISPANPVN------------TESEISRQIQLSNPVIAFATS 150 (456)
Q Consensus 91 gi~~gd~V~l~~~~~~~~------~~~~la~~-~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~vi~~~ 150 (456)
-+++||+|+|++|.+.-. +-.-...+ ..|..++.-.... ..++|...+.+-++++|++..
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 86 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTL 86 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 478999999999987632 22222233 3577766543211 235677777788889999864
No 85
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=24.76 E-value=64 Score=20.57 Aligned_cols=21 Identities=10% Similarity=0.151 Sum_probs=15.9
Q ss_pred HHhHhhcCCCCCCEEEEEcCC
Q 012774 84 SYLQNVTRLSKNDTAFVLSTN 104 (456)
Q Consensus 84 ~~L~~~~gi~~gd~V~l~~~~ 104 (456)
..+++++|+++||.|.+...+
T Consensus 28 keiR~~Lgi~~Gd~l~i~~~~ 48 (59)
T 1yfb_A 28 IELRRTLGIAEKDALEIYVDD 48 (59)
T ss_dssp HHHHHHTTCCTTCEEEEEEET
T ss_pred HHHHHHcCCCCCCEEEEEEEC
Confidence 345556899999999887654
No 86
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=24.52 E-value=1.3e+02 Score=20.18 Aligned_cols=45 Identities=18% Similarity=0.161 Sum_probs=31.3
Q ss_pred ceecHHHHHHHHHHHHHHhHhhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCC
Q 012774 68 LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGV 120 (456)
Q Consensus 68 ~~~Ty~eL~~~~~~~a~~L~~~~gi~~gd~V~l~~~~~~~~~~~~la~~~~G~ 120 (456)
..+.+.++.+ .+.+ +++.+++.|.++|..+.....+...+...|.
T Consensus 22 ~~ip~~~l~~-------~~~~-l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~ 66 (85)
T 2jtq_A 22 INIPLKEVKE-------RIAT-AVPDKNDTVKVYCNAGRQSGQAKEILSEMGY 66 (85)
T ss_dssp EECCHHHHHH-------HHHH-HCCCTTSEEEEEESSSHHHHHHHHHHHHTTC
T ss_pred EEcCHHHHHH-------HHHH-hCCCCCCcEEEEcCCCchHHHHHHHHHHcCC
Confidence 4566766654 3444 5667888999999888777667667777775
No 87
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=24.36 E-value=1.6e+02 Score=26.62 Aligned_cols=60 Identities=22% Similarity=0.066 Sum_probs=37.8
Q ss_pred CCCCCCEEEEEcCCCCc------HHHHHHHHH-HhCCeEecCCCC------------CCHHHHHHHhhhcCCeEEEEcc
Q 012774 91 RLSKNDTAFVLSTNSIE------IPILYFSLL-SLGVIISPANPV------------NTESEISRQIQLSNPVIAFATS 150 (456)
Q Consensus 91 gi~~gd~V~l~~~~~~~------~~~~~la~~-~~G~~~v~l~~~------------~~~~~l~~~l~~~~~~~vi~~~ 150 (456)
-+++||+|+|++|.+.- -+-.-...+ ..|..++.-... ...++|...+.+-++++|++..
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 87 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTI 87 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 47899999999998853 222223233 357776653211 1235677777778889999864
No 88
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=23.84 E-value=1.8e+02 Score=26.22 Aligned_cols=79 Identities=13% Similarity=0.181 Sum_probs=45.9
Q ss_pred eecHHHHHHHH--HHHH-HHhHhhcCCCCCCEEEEEcCCC-CcHHHHHHHHHHhCCe-EecCCCCCCHHHHHHHhhhcCC
Q 012774 69 RVSFSEFTRRT--NSLA-SYLQNVTRLSKNDTAFVLSTNS-IEIPILYFSLLSLGVI-ISPANPVNTESEISRQIQLSNP 143 (456)
Q Consensus 69 ~~Ty~eL~~~~--~~~a-~~L~~~~gi~~gd~V~l~~~~~-~~~~~~~la~~~~G~~-~v~l~~~~~~~~l~~~l~~~~~ 143 (456)
.+++.+..... -..| ..|.+..++++|++|+|....+ .-..++.+|- ..|+. ++..+.....++....++..++
T Consensus 139 ~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lGa 217 (357)
T 1zsy_A 139 DIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAA-ALGLRTINVVRDRPDIQKLSDRLKSLGA 217 (357)
T ss_dssp SSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHH-HHTCEEEEEECCCSCHHHHHHHHHHTTC
T ss_pred CCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHH-HcCCEEEEEecCccchHHHHHHHHhcCC
Confidence 36776654321 1222 2444435799999999998744 5555555554 45874 4444444444444456667777
Q ss_pred eEEEE
Q 012774 144 VIAFA 148 (456)
Q Consensus 144 ~~vi~ 148 (456)
..++.
T Consensus 218 ~~vi~ 222 (357)
T 1zsy_A 218 EHVIT 222 (357)
T ss_dssp SEEEE
T ss_pred cEEEe
Confidence 76664
No 89
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=23.38 E-value=2.7e+02 Score=25.27 Aligned_cols=57 Identities=12% Similarity=-0.014 Sum_probs=36.8
Q ss_pred cCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEecCCCC----CCHHHHHHHhhhc--CCeEEEEc
Q 012774 90 TRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV----NTESEISRQIQLS--NPVIAFAT 149 (456)
Q Consensus 90 ~gi~~gd~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~----~~~~~l~~~l~~~--~~~~vi~~ 149 (456)
+++++||.|.+..+...... .++...|+.++.++.+ .+.+.++..++.. ++++|+..
T Consensus 67 l~~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~ 129 (394)
T 1o69_A 67 AGVKQDDIVLASSFTFIASV---APICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILT 129 (394)
T ss_dssp TTCCTTCEEEEESSSCGGGT---HHHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEE
T ss_pred cCCCCCCEEEECCCccHHHH---HHHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEE
Confidence 34678999888776555543 3344578766655432 4678888888764 56666654
No 90
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=22.11 E-value=2.4e+02 Score=26.26 Aligned_cols=54 Identities=11% Similarity=0.177 Sum_probs=26.1
Q ss_pred CCCCCEEEEEcCCCCcHHHHHH--HHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEE
Q 012774 92 LSKNDTAFVLSTNSIEIPILYF--SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFA 148 (456)
Q Consensus 92 i~~gd~V~l~~~~~~~~~~~~l--a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 148 (456)
+++||.|.+..+ ........+ .+...|+.++.++.. +.+.++..++. +.++|++
T Consensus 118 ~~~Gd~Vi~~~~-~y~~~~~~~~~~~~~~G~~~~~v~~~-d~~~l~~ai~~-~t~~v~~ 173 (430)
T 3ri6_A 118 ARAGDSVVTTDR-LFGHTLSLFQKTLPSFGIEVRFVDVM-DSLAVEHACDE-TTKLLFL 173 (430)
T ss_dssp CCTTCEEEEETT-CCHHHHHHHHTHHHHTTCEEEEECTT-CHHHHHHHCCT-TEEEEEE
T ss_pred hCCCCEEEEcCC-CchhHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHhhCC-CCeEEEE
Confidence 456666644332 222222222 344556666655544 55566655543 4455553
No 91
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=22.09 E-value=2.3e+02 Score=25.38 Aligned_cols=54 Identities=9% Similarity=0.127 Sum_probs=36.4
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEecCCCC-------CCHHHHHHHhhhcCCeEEEE
Q 012774 92 LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV-------NTESEISRQIQLSNPVIAFA 148 (456)
Q Consensus 92 i~~gd~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~-------~~~~~l~~~l~~~~~~~vi~ 148 (456)
.++||.|.+..+ .+.....++...|+.++.++.. .+.+.++..++..++++|+.
T Consensus 106 ~~~gd~vl~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i 166 (391)
T 3dzz_A 106 TSPGDQILVQEP---VYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVF 166 (391)
T ss_dssp SCTTCEEEECSS---CCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEE
T ss_pred CCCCCeEEECCC---CcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEE
Confidence 467888775443 3333445666788877766542 67899999987667777754
No 92
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=21.90 E-value=2.4e+02 Score=25.19 Aligned_cols=56 Identities=7% Similarity=-0.008 Sum_probs=32.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHhCCeEecCCC--C--CCHHHHHHHhhhcCCeEEEEc
Q 012774 93 SKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANP--V--NTESEISRQIQLSNPVIAFAT 149 (456)
Q Consensus 93 ~~gd~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~--~--~~~~~l~~~l~~~~~~~vi~~ 149 (456)
++||.|.+..+..+.+...+.++...|+.++.++. + .+.+.++..++. ++++|+..
T Consensus 87 ~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 146 (384)
T 1eg5_A 87 KRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-DTFLVSIM 146 (384)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-TEEEEEEE
T ss_pred CCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC-CCeEEEEE
Confidence 57888776554433333333344566876665543 2 467788877764 56666543
No 93
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=21.35 E-value=1.7e+02 Score=26.81 Aligned_cols=54 Identities=15% Similarity=0.065 Sum_probs=38.2
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEecCCCCCCHHHHHHHhhhcCCeEEEEc
Q 012774 92 LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFAT 149 (456)
Q Consensus 92 i~~gd~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 149 (456)
.++||.|.+-. +.+....-++...|+.+++++. .+.+.++..++..+++++++.
T Consensus 140 ~~~gd~Vl~~~---~~~~~~~~~~~~~g~~~~~~~~-~d~~~le~~l~~~~~~~vi~~ 193 (409)
T 3kki_A 140 CQPNTNVYIDF---FAHMSLWEGARYANAQAHPFMH-NNCDHLRMLIQRHGPGIIVVD 193 (409)
T ss_dssp CCTTCEEEEET---TSCHHHHHHHHHTTCEEEEECT-TCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCEEEECC---CcCHHHHHHHHHcCCeEEEecC-CCHHHHHHHHHhcCCeEEEEC
Confidence 46899887643 3344555667778988887754 568889988887666777765
Done!