Query 012775
Match_columns 456
No_of_seqs 153 out of 236
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 06:10:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012775.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012775hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03094 Mlo: Mlo family; Int 100.0 4E-144 8E-149 1117.6 28.2 334 19-354 104-443 (478)
2 TIGR01106 ATPase-IIC_X-K sodiu 47.3 65 0.0014 38.0 8.1 37 248-284 817-853 (997)
3 KOG1899 LAR transmembrane tyro 38.7 53 0.0011 37.7 5.4 97 316-424 281-377 (861)
4 PF12129 Phtf-FEM1B_bdg: Male 29.2 42 0.00091 32.1 2.4 14 204-217 129-142 (159)
5 COG3114 CcmD Heme exporter pro 29.0 96 0.0021 25.9 4.1 37 192-229 10-56 (67)
6 PF15468 DUF4636: Domain of un 24.2 35 0.00076 34.3 0.9 38 161-203 25-62 (243)
7 PF09878 DUF2105: Predicted me 22.6 96 0.0021 30.9 3.5 46 170-220 158-206 (212)
8 PF05879 RHD3: Root hair defec 21.0 1.1E+02 0.0023 35.4 4.0 25 180-208 649-673 (742)
9 PF15444 TMEM247: Transmembran 19.1 1.3E+02 0.0028 29.8 3.6 23 52-74 193-215 (218)
10 smart00153 VHP Villin headpiec 16.1 65 0.0014 23.6 0.6 13 169-181 4-16 (36)
No 1
>PF03094 Mlo: Mlo family; InterPro: IPR004326 The Mlo-related proteins are a family of plant integral membrane proteins, first discovered in barley. Mutants lacking wild-type Mlo proteins show broad spectrum resistance to the powdery mildew fungus, and dysregulated cell death control, with spontaneous cell death in response to developmental or abiotic stimuli. Thus wild-type Mlo proteins are thought to be inhibitors of cell death whose deficiency lowers the threshold required to trigger the cascade of events that result in plant cell death. Mlo proteins are localized in the plasma membrane and possess seven transmembrane regions; thus the Mlo family is the only major higher plant family to possess 7 transmembrane domains. It has been suggested that Mlo proteins function as G-protein coupled receptors in plants []; however the molecular and biological functions of Mlo proteins is still unclear.; GO: 0008219 cell death, 0016021 integral to membrane
Probab=100.00 E-value=3.6e-144 Score=1117.61 Aligned_cols=334 Identities=52% Similarity=0.991 Sum_probs=321.7
Q ss_pred Ccccccc---ccccccCC-CCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHhhhcccccccc
Q 012775 19 RYRRVLN---ELNKNTCK-EGYEPFVSYEGLEQLHRFIFVMAVTHISYSCLTMLLAIVKIHSWRVWEEEAHMDRHDSLTE 94 (456)
Q Consensus 19 ~~RR~L~---~~~~~~C~-~GkvPlvS~egLHQLHIFIFVLAv~HV~Ys~lTm~Lg~~Kir~Wk~WE~e~~~~~~~~~~~ 94 (456)
+.||+|+ +.+.++|+ +|||||+|+|||||||||||||||+||+|||+||+||++|||+||+||+|+++++|+ ..+
T Consensus 104 ~~r~ll~~~~~~~~~~C~~kGkvpliS~egLHQLHIFIFVLAV~HV~Ys~lTm~Lg~~KIr~Wk~WE~e~~~~~~~-~~~ 182 (478)
T PF03094_consen 104 NRRRLLASGAAEGSDYCPKKGKVPLISAEGLHQLHIFIFVLAVVHVLYSCLTMLLGRAKIRRWKKWEDEAQTDEYQ-FSN 182 (478)
T ss_pred hhhhhhhhhcccccCcccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-ccc
Confidence 4667765 24577997 599999999999999999999999999999999999999999999999999998888 455
Q ss_pred ccceeEeecccchhhhcccCCCCCchhHHHHHHHHhhhcCCccchhHHHHHHhhhhhcCCC-CCCChHHHHHHHHHHhhh
Q 012775 95 ITRELTIRRQTTFVRYHTSNPLSRNKLLIWVTCFFRQFGRSVVRADYLTLRKGFIMNHNLS-PKYDFHSYMIRSMEEEFQ 173 (456)
Q Consensus 95 ~~~~~~~~rqttFvr~H~s~~ws~~~~l~Wi~cFfRQF~~SV~k~DYltLR~GFI~~H~~~-~kFDFhkYi~RsLEdDFk 173 (456)
||++++++||++|+|+|+ ++|++++++.|++||||||++||+|+||+|||+|||++|+++ ++|||||||+||||||||
T Consensus 183 d~~r~~~~~qt~F~r~h~-~~w~~~~~~~wi~~FfrQF~~SV~k~DYltLR~gFI~~H~~~~~~FDFh~Yi~RsLEdDFk 261 (478)
T PF03094_consen 183 DPRRFRLTRQTTFVRRHT-SFWSKSPVLSWIVCFFRQFYGSVTKSDYLTLRHGFITAHLLPNPKFDFHKYIKRSLEDDFK 261 (478)
T ss_pred CcceeeeecccHHHHhhc-CCcccChhHHhHHHHHHHhhccccHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHH
Confidence 799999999999999999 789999999999999999999999999999999999999986 999999999999999999
Q ss_pred hhcccchhHHHHHHHHhhhccCCcchhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhcccCcccc-cccccCCCcccccC
Q 012775 174 RIVGVSGPLWGFVVAFMLFNVKGSNLYFWIAIIPVTLVLLVGSKLQHVIATLALENAGITGYFAG-AKLKPRDELFWFNK 252 (456)
Q Consensus 174 ~VVGIS~~LW~~vviFlLlnv~Gw~~yfWlsfiPliliLlVGtKLq~IIt~LAlei~e~~~~~~G-~~vkpsD~lFWF~r 252 (456)
+||||||+||++||+|+|+|++|||+|||++|||++++|+||||||+||++||+|++|++++++| |+|||+|++|||+|
T Consensus 262 ~VVGIS~~lW~~vv~fll~nv~gw~~yfW~sfipl~liL~VGtKLq~Ii~~ma~ei~~~~~~~~g~p~v~p~d~~FWF~r 341 (478)
T PF03094_consen 262 VVVGISWYLWAFVVLFLLLNVHGWHTYFWLSFIPLILILLVGTKLQHIITKMALEIAERHAVIKGTPLVKPSDDLFWFGR 341 (478)
T ss_pred HheeccccHhhhhheeeeecCCcceeEeehhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccCcccccccccceecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999 57999999999999
Q ss_pred chHHHHHHHHHHHhhhHHHHHHHHHHHhhcCCcccccccceeeehhhhhccccccccccccccchhhhhccccccccccc
Q 012775 253 PELMLSLIHFILFQNAFELASFFWFWWQFGYNSCFIHNHLLVYLRLILGFAGQFLCSYSTLPLYALVTQMGTNYKAALIP 332 (456)
Q Consensus 253 P~llL~LIHfiLFQNAFelAfF~W~~~~fG~~SCf~~~~~~ii~Rl~~Gv~vQvlCSY~TLPLYALVTQMGS~~K~~if~ 332 (456)
|+|||+||||||||||||||+|+|+||+||++||||++.+++++|+++|+++|++|||+|||||||||||||+||++||+
T Consensus 342 P~llL~lihfilFqnAFela~f~w~~~~~g~~sC~~~~~~~~i~rl~~gv~vq~lcsy~tLPLYaLVTqMGS~~K~~if~ 421 (478)
T PF03094_consen 342 PRLLLHLIHFILFQNAFELAFFFWIWWQFGFDSCFMENTEYIIIRLVMGVVVQVLCSYVTLPLYALVTQMGSHMKKAIFN 421 (478)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCceeEecCccceeeehhhhhhhhhhcchhhhhHHHHHhccccccchhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhhhccCC
Q 012775 333 RRIRETIHGWGKAARRKRRLGH 354 (456)
Q Consensus 333 e~v~~~L~~W~~~akkk~~~~~ 354 (456)
|+|+++|++||++||||+++++
T Consensus 422 e~v~~al~~W~~~ak~~~~~~~ 443 (478)
T PF03094_consen 422 EQVSKALKKWHKKAKKKKKHKK 443 (478)
T ss_pred HHHHHHHHHHHHHHHHhhccCC
Confidence 9999999999999999987765
No 2
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=47.31 E-value=65 Score=37.99 Aligned_cols=37 Identities=11% Similarity=0.089 Sum_probs=30.1
Q ss_pred ccccCchHHHHHHHHHHHhhhHHHHHHHHHHHhhcCC
Q 012775 248 FWFNKPELMLSLIHFILFQNAFELASFFWFWWQFGYN 284 (456)
Q Consensus 248 FWF~rP~llL~LIHfiLFQNAFelAfF~W~~~~fG~~ 284 (456)
..++++.++...+-..++|-.+.+++|+|.++.+|+.
T Consensus 817 ~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~ 853 (997)
T TIGR01106 817 KLVNERLISMAYGQIGMIQALGGFFTYFVILAENGFL 853 (997)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 6677777777777778899999999999998877753
No 3
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=38.69 E-value=53 Score=37.68 Aligned_cols=97 Identities=21% Similarity=0.153 Sum_probs=58.2
Q ss_pred chhhhhccccccccccchhHHHHHHHHHHHHhhhhccCCCCCCCccccccCCCcccccccccccccCCcccccCCCCCCc
Q 012775 316 YALVTQMGTNYKAALIPRRIRETIHGWGKAARRKRRLGHFTDDSTIHTVTDASTVASLEEYDHQLIDIPETAIGAGNSTG 395 (456)
Q Consensus 316 YALVTQMGS~~K~~if~e~v~~~L~~W~~~akkk~~~~~~~~~~~~~~~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 395 (456)
.|+-++|-++=.|.=|-|..+.-+.+..+.+.-.+-....+.++.-+. +.-++.++.+++|.-- ..+ .
T Consensus 281 ~a~eslm~ane~kdr~ie~lr~~ln~y~k~~~iv~i~qg~~~~~~s~~--e~~p~s~~S~~n~~~g-p~~---------~ 348 (861)
T KOG1899|consen 281 NALESLMRANEQKDRFIESLRNYLNNYDKNAQIVRILQGEPSDSMSHS--ESFPVSSSSTTNNGKG-PRS---------T 348 (861)
T ss_pred HHHHHHHhhchhhhhHHHHHHHHhhhhhhhhhhhhhhcCCCccccccc--ccccccccccccccCC-ccc---------c
Confidence 467788988888888888888888887766655543333333333333 4445555555543222 111 1
Q ss_pred ceEeeecccCCCCCCCCCCCCCCccCccc
Q 012775 396 AEVELQPRNISNSPASVPNETSSRVGTPL 424 (456)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (456)
.+-+-.|.+++|.+.|.++-+|++.|++=
T Consensus 349 ~~~s~~p~~ssp~v~P~~~~~S~slg~lr 377 (861)
T KOG1899|consen 349 VQSSSSPNMSSPAVSPQHNWSSASLGTLR 377 (861)
T ss_pred ccCCCCCcCCCCCCCCccccccccccchh
Confidence 11122345677777888888888888753
No 4
>PF12129 Phtf-FEM1B_bdg: Male germ-cell putative homeodomain transcription factor; InterPro: IPR021980 This domain is found in bacteria and eukaryotes, and is typically between 101 and 140 amino acids in length. Phtf proteins do not display any sequence similarity to known or predicted proteins, but their conservation among species suggests an essential function. The 84 kDa Phtf1 protein is an integral membrane protein, anchored to a cell membrane by six to eight trans-membrane domains, that is associated with a domain of the endoplasmic reticulum (ER) juxtaposed to the Golgi apparatus. It is present during meiosis and spermiogenesis, and, by the end of spermiogenesis, is released from the mature spermatozoon within the residual bodies []. Phtf1 enhances the binding of FEM1B -feminisation homologue 1B - to cell membranes. Fem-1 was initially identified in the signaling pathway for sex determination, as well as being implicated in apoptosis, but its biochemical role is still unclear, and neither FEM1B nor PHTF1 is directly implicated in apoptosis in spermatogenesis. It is the ANK domain of FEM1B that is necessary for the interaction with the N-terminal region of Phtf1 [].
Probab=29.24 E-value=42 Score=32.09 Aligned_cols=14 Identities=36% Similarity=0.681 Sum_probs=12.2
Q ss_pred hhHHHHHHHHhhhH
Q 012775 204 AIIPVTLVLLVGSK 217 (456)
Q Consensus 204 sfiPliliLlVGtK 217 (456)
-++|+.++|++|+=
T Consensus 129 v~~Pi~LmLlLg~V 142 (159)
T PF12129_consen 129 VFGPICLMLLLGTV 142 (159)
T ss_pred HHHHHHHHHHHHHh
Confidence 57999999999983
No 5
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=29.05 E-value=96 Score=25.91 Aligned_cols=37 Identities=32% Similarity=0.651 Sum_probs=20.1
Q ss_pred hccCCcchhhhh----hhHHHHHHHHhhhHH------HHHHHHHHHHH
Q 012775 192 FNVKGSNLYFWI----AIIPVTLVLLVGSKL------QHVIATLALEN 229 (456)
Q Consensus 192 lnv~Gw~~yfWl----sfiPliliLlVGtKL------q~IIt~LAlei 229 (456)
+|..|...|-|+ +.+|+++ |+|-+-+ +.|.-+.|.|.
T Consensus 10 faMGgyafyVWlA~~~tll~l~~-l~v~sv~qrr~iL~~v~r~~aRea 56 (67)
T COG3114 10 FAMGGYAFYVWLAVGMTLLPLAV-LVVHSVLQRRAILRGVARQRAREA 56 (67)
T ss_pred HHccCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777 4455544 4444434 44445555553
No 6
>PF15468 DUF4636: Domain of unknown function (DUF4636)
Probab=24.16 E-value=35 Score=34.32 Aligned_cols=38 Identities=29% Similarity=0.566 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhhhhcccchhHHHHHHHHhhhccCCcchhhhh
Q 012775 161 HSYMIRSMEEEFQRIVGVSGPLWGFVVAFMLFNVKGSNLYFWI 203 (456)
Q Consensus 161 hkYi~RsLEdDFk~VVGIS~~LW~~vviFlLlnv~Gw~~yfWl 203 (456)
+.|=.| +||+-.++| +..||-||+|++|.=. ..+++|+
T Consensus 25 qdyEc~--KDdsc~~iG-~fLlWyfviilvLm~~--~ras~Wm 62 (243)
T PF15468_consen 25 QDYECR--KDDSCGAIG-SFLLWYFVIILVLMFF--SRASVWM 62 (243)
T ss_pred cchhhc--cCCccchhh-hHHHHHHHHHHHHHHH--HHHHHHH
Confidence 344433 899988888 7899999887765411 3444554
No 7
>PF09878 DUF2105: Predicted membrane protein (DUF2105); InterPro: IPR019212 This entry represents a protein found in various hypothetical archaeal proteins, has no known function.
Probab=22.58 E-value=96 Score=30.89 Aligned_cols=46 Identities=24% Similarity=0.426 Sum_probs=27.8
Q ss_pred HhhhhhcccchhHHHHHHHHhhhccCCcchhhhhhhHHH---HHHHHhhhHHHH
Q 012775 170 EEFQRIVGVSGPLWGFVVAFMLFNVKGSNLYFWIAIIPV---TLVLLVGSKLQH 220 (456)
Q Consensus 170 dDFk~VVGIS~~LW~~vviFlLlnv~Gw~~yfWlsfiPl---iliLlVGtKLq~ 220 (456)
|-...+-||.|-+|++.-+.+++ .+-+|+.++=+ .+++=||+|+--
T Consensus 158 egi~~~SGiaWalWi~gF~~Ff~-----~P~~Wl~~L~lAg~gl~iKV~sKlgL 206 (212)
T PF09878_consen 158 EGIEGVSGIAWALWIAGFIGFFL-----FPQYWLLALMLAGCGLLIKVGSKLGL 206 (212)
T ss_pred ehhhhhhhHHHHHHHHHHHHHHH-----hHHHHHHHHHHHhcchhhhhhhhhhh
Confidence 34556778889999765433222 34567755533 456667777754
No 8
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=21.05 E-value=1.1e+02 Score=35.37 Aligned_cols=25 Identities=24% Similarity=0.535 Sum_probs=18.6
Q ss_pred hhHHHHHHHHhhhccCCcchhhhhhhHHH
Q 012775 180 GPLWGFVVAFMLFNVKGSNLYFWIAIIPV 208 (456)
Q Consensus 180 ~~LW~~vviFlLlnv~Gw~~yfWlsfiPl 208 (456)
+|+|+++++.+| ||+=..++---|+
T Consensus 649 iP~w~~~ll~vL----GwNE~m~vLrnPl 673 (742)
T PF05879_consen 649 IPPWMYLLLLVL----GWNEFMAVLRNPL 673 (742)
T ss_pred CCHHHHHHHHHH----hHHHHHHHHHChH
Confidence 688888887766 8988887744444
No 9
>PF15444 TMEM247: Transmembrane protein 247
Probab=19.11 E-value=1.3e+02 Score=29.77 Aligned_cols=23 Identities=22% Similarity=0.522 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012775 52 IFVMAVTHISYSCLTMLLAIVKI 74 (456)
Q Consensus 52 IFVLAv~HV~Ys~lTm~Lg~~Ki 74 (456)
||+|--=|-+||+.+++|+..|-
T Consensus 193 vfflfskhylfciaaillclikt 215 (218)
T PF15444_consen 193 VFFLFSKHYLFCIAAILLCLIKT 215 (218)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Confidence 46666678888999999999883
No 10
>smart00153 VHP Villin headpiece domain.
Probab=16.12 E-value=65 Score=23.59 Aligned_cols=13 Identities=23% Similarity=0.756 Sum_probs=10.6
Q ss_pred HHhhhhhcccchh
Q 012775 169 EEEFQRIVGVSGP 181 (456)
Q Consensus 169 EdDFk~VVGIS~~ 181 (456)
++||+.|.|+|.-
T Consensus 4 deeF~~vfgmsr~ 16 (36)
T smart00153 4 DEDFEEVFGMTRE 16 (36)
T ss_pred HHHHHHHHCCCHH
Confidence 7899999998753
Done!