Query 012775
Match_columns 456
No_of_seqs 153 out of 236
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 15:59:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012775.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012775hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wy3_A Villin; structural prot 14.8 47 0.0016 23.3 0.6 13 169-181 3-15 (35)
2 1und_A Advillin, P92; actin bi 14.5 48 0.0016 23.5 0.6 13 169-181 5-17 (37)
3 2knc_B Integrin beta-3; transm 11.4 3.2E+02 0.011 21.9 4.7 17 74-90 41-57 (79)
4 2w7n_A TRFB transcriptional re 8.0 1.9E+02 0.0064 24.2 2.2 24 328-351 75-98 (101)
5 1qzp_A Dematin; villin headpie 7.8 1.1E+02 0.0039 24.1 0.7 13 169-181 36-48 (68)
6 2jm3_A Hypothetical protein; z 7.4 4.6E+02 0.016 21.2 4.3 40 331-381 30-69 (91)
7 1vf6_C Maguk P55 subfamily mem 7.3 2E+02 0.0069 23.1 1.9 18 254-271 40-57 (72)
8 2k6m_S Supervillin; SVHP, HP, 7.2 1.3E+02 0.0043 23.8 0.8 19 160-181 29-47 (67)
9 2l16_A SEC-independent protein 7.1 2.2E+02 0.0074 22.9 2.1 26 206-231 13-39 (78)
10 1yu8_X Villin; alpha helix, 3- 6.8 1.3E+02 0.0045 23.8 0.6 19 160-181 29-47 (67)
No 1
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=14.81 E-value=47 Score=23.29 Aligned_cols=13 Identities=23% Similarity=0.749 Sum_probs=10.3
Q ss_pred HHhhhhhcccchh
Q 012775 169 EEEFQRIVGVSGP 181 (456)
Q Consensus 169 EdDFk~VVGIS~~ 181 (456)
|+||+.|.|+|-.
T Consensus 3 d~dF~~vFgmsr~ 15 (35)
T 1wy3_A 3 DEDFKAVFGMTRS 15 (35)
T ss_dssp HHHHHHHHSSCHH
T ss_pred HHHHHHHHCCCHH
Confidence 6889999888753
No 2
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=14.53 E-value=48 Score=23.47 Aligned_cols=13 Identities=23% Similarity=0.644 Sum_probs=10.7
Q ss_pred HHhhhhhcccchh
Q 012775 169 EEEFQRIVGVSGP 181 (456)
Q Consensus 169 EdDFk~VVGIS~~ 181 (456)
|+||+.|.|+|-.
T Consensus 5 d~dF~~vFgmsr~ 17 (37)
T 1und_A 5 EQDFVSVFGITRG 17 (37)
T ss_dssp HHHHHHHHSSCHH
T ss_pred HHHHHHHHCcCHH
Confidence 6899999998863
No 3
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=11.39 E-value=3.2e+02 Score=21.85 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=12.7
Q ss_pred HHhhHHhHHHhhhcccc
Q 012775 74 IHSWRVWEEEAHMDRHD 90 (456)
Q Consensus 74 ir~Wk~WE~e~~~~~~~ 90 (456)
-|.++++|+|.++...+
T Consensus 41 rrE~~kFEkE~~~~~w~ 57 (79)
T 2knc_B 41 RKEFAKFEEERARAKWD 57 (79)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcccc
Confidence 67889999997765443
No 4
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=7.98 E-value=1.9e+02 Score=24.24 Aligned_cols=24 Identities=21% Similarity=0.537 Sum_probs=18.8
Q ss_pred ccccchhHHHHHHHHHHHHhhhhc
Q 012775 328 AALIPRRIRETIHGWGKAARRKRR 351 (456)
Q Consensus 328 ~~if~e~v~~~L~~W~~~akkk~~ 351 (456)
..+++++.+..++.|...|+||..
T Consensus 75 ~v~lP~~~a~~v~~~~~~a~~~~~ 98 (101)
T 2w7n_A 75 TAVLPEHQAYIVRKWEADAKKKQE 98 (101)
T ss_dssp EEEECHHHHHHHHHHHHHHHC---
T ss_pred eeecCHHHHHHHHHHHHHHHHhhc
Confidence 456899999999999999988764
No 5
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=7.79 E-value=1.1e+02 Score=24.06 Aligned_cols=13 Identities=31% Similarity=0.606 Sum_probs=11.4
Q ss_pred HHhhhhhcccchh
Q 012775 169 EEEFQRIVGVSGP 181 (456)
Q Consensus 169 EdDFk~VVGIS~~ 181 (456)
++||+.|.|||.-
T Consensus 36 dedF~~vFgmsr~ 48 (68)
T 1qzp_A 36 AEDFSRVFAMSPE 48 (68)
T ss_dssp HHHHHHHSSSCHH
T ss_pred HHHHHHHHCcCHH
Confidence 7999999999864
No 6
>2jm3_A Hypothetical protein; zinc finger, domain, metal binding protein; NMR {Caenorhabditis elegans}
Probab=7.39 E-value=4.6e+02 Score=21.19 Aligned_cols=40 Identities=23% Similarity=0.190 Sum_probs=25.4
Q ss_pred cchhHHHHHHHHHHHHhhhhccCCCCCCCccccccCCCccccccccccccc
Q 012775 331 IPRRIRETIHGWGKAARRKRRLGHFTDDSTIHTVTDASTVASLEEYDHQLI 381 (456)
Q Consensus 331 f~e~v~~~L~~W~~~akkk~~~~~~~~~~~~~~~t~~~~~~~l~~~~~~~~ 381 (456)
|..+-.+-.+.|-+..+++.. +++..+-|||.+=..+++.
T Consensus 30 FPk~~~~~rk~Wl~ai~r~~~-----------~~~~~~rICS~HF~~~~~~ 69 (91)
T 2jm3_A 30 IPKRPLILRQRWLTAIGRTEE-----------TVVSQLRICSAHFEGGEKK 69 (91)
T ss_dssp CCCSSHHHHHHHHHHHTCCGG-----------GSSSSCCBCGGGSTTSCCS
T ss_pred CCCCCHHHHHHHHHHhCCCCC-----------CCCCCcEEechhcCCCCcc
Confidence 444434567899998876532 1236678999986655543
No 7
>1vf6_C Maguk P55 subfamily member 5; L27 domain, heterodimer, four-helical bundle, coiled-coil, hydrophobic packing interactions; 2.10A {Mus musculus} SCOP: a.194.1.1
Probab=7.28 E-value=2e+02 Score=23.14 Aligned_cols=18 Identities=44% Similarity=0.683 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHhhhHHH
Q 012775 254 ELMLSLIHFILFQNAFEL 271 (456)
Q Consensus 254 ~llL~LIHfiLFQNAFel 271 (456)
.+||-|.|=.=|||||-+
T Consensus 40 ~lllqL~~~~DFQ~A~kI 57 (72)
T 1vf6_C 40 SLLLQLVQNRDFQNAFKI 57 (72)
T ss_dssp HHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHH
Confidence 588889999999999976
No 8
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=7.22 E-value=1.3e+02 Score=23.79 Aligned_cols=19 Identities=16% Similarity=0.485 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHhhhhhcccchh
Q 012775 160 FHSYMIRSMEEEFQRIVGVSGP 181 (456)
Q Consensus 160 FhkYi~RsLEdDFk~VVGIS~~ 181 (456)
-..|+. ++||+.|.|+|..
T Consensus 29 lE~yLs---dedF~~vFgmsr~ 47 (67)
T 2k6m_S 29 LEIYLT---DEDFEFALDMTRD 47 (67)
T ss_dssp CGGGSC---HHHHHHHTSSCHH
T ss_pred HHhhCC---HHHHHHHHCcCHH
Confidence 344553 7999999999863
No 9
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=7.10 E-value=2.2e+02 Score=22.93 Aligned_cols=26 Identities=23% Similarity=0.208 Sum_probs=17.6
Q ss_pred HHHHHHHHhh-hHHHHHHHHHHHHHhc
Q 012775 206 IPVTLVLLVG-SKLQHVIATLALENAG 231 (456)
Q Consensus 206 iPliliLlVG-tKLq~IIt~LAlei~e 231 (456)
|-++++|++| -||-.+.-.++.-+.+
T Consensus 13 IlvVaLlvfGpkkLP~l~r~lGk~ir~ 39 (78)
T 2l16_A 13 IFVIALIIFGPSKLPEIGRAAGRTLLE 39 (78)
T ss_dssp HHHHHHHHSCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhheeCccHhHHHHHHHHHHHHH
Confidence 4445567777 6788888777776544
No 10
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=6.82 E-value=1.3e+02 Score=23.77 Aligned_cols=19 Identities=16% Similarity=0.457 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHhhhhhcccchh
Q 012775 160 FHSYMIRSMEEEFQRIVGVSGP 181 (456)
Q Consensus 160 FhkYi~RsLEdDFk~VVGIS~~ 181 (456)
-..|+. ++||+.|.|+|.-
T Consensus 29 lE~yLs---dedF~~vFgms~~ 47 (67)
T 1yu8_X 29 KENHLS---DEDFKAVFGMTRS 47 (67)
T ss_dssp GGGGSC---HHHHHHHHSSCHH
T ss_pred HHhcCC---HHHHHHHHCcCHH
Confidence 445554 7999999999864
Done!