Query 012775
Match_columns 456
No_of_seqs 153 out of 236
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 15:59:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012775.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012775hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf6c_ a.194.1.1 (C:) Maguk p 25.4 16 0.0012 25.8 1.9 18 254-271 29-46 (51)
2 d1yu8x1 a.14.1.1 (X:42-76) Vil 15.1 21 0.0016 23.4 0.6 12 169-180 3-14 (35)
3 d1unda_ a.14.1.1 (A:) Advillin 14.9 22 0.0016 23.5 0.6 12 169-180 4-15 (36)
4 d1xrda1 f.3.1.1 (A:1-52) Light 12.0 48 0.0035 23.6 1.8 14 45-58 14-27 (52)
5 d1ug0a_ a.217.1.1 (A:) Splicin 11.2 62 0.0045 24.4 2.4 53 216-281 25-80 (88)
6 d1yu5x1 a.14.1.1 (X:10-76) Vil 7.4 55 0.004 24.1 0.6 13 169-181 35-47 (67)
7 d1qzpa_ a.14.1.1 (A:) Dematin 7.2 60 0.0043 24.0 0.7 13 169-181 36-48 (68)
8 d1x4oa1 a.217.1.1 (A:8-72) Spl 6.7 1E+02 0.0073 21.8 1.8 36 216-251 8-45 (65)
9 d1q1ha_ a.4.5.41 (A:) Transcri 6.5 45 0.0033 25.8 -0.3 34 169-203 36-81 (88)
10 d2axtl1 f.23.31.1 (L:1-37) Pho 6.4 1.4E+02 0.01 19.6 2.2 13 50-62 22-34 (37)
No 1
>d1vf6c_ a.194.1.1 (C:) Maguk p55 subfamily member 5, Patj {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.42 E-value=16 Score=25.79 Aligned_cols=18 Identities=44% Similarity=0.683 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHhhhHHH
Q 012775 254 ELMLSLIHFILFQNAFEL 271 (456)
Q Consensus 254 ~llL~LIHfiLFQNAFel 271 (456)
.++|-|.|=.=|||||.+
T Consensus 29 ~l~lqLvqn~DFQnAfkI 46 (51)
T d1vf6c_ 29 SLLLQLVQNRDFQNAFKI 46 (51)
T ss_dssp HHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHH
Confidence 588999999999999986
No 2
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=15.10 E-value=21 Score=23.44 Aligned_cols=12 Identities=25% Similarity=0.800 Sum_probs=9.8
Q ss_pred HHhhhhhcccch
Q 012775 169 EEEFQRIVGVSG 180 (456)
Q Consensus 169 EdDFk~VVGIS~ 180 (456)
++||+.|.|+|-
T Consensus 3 d~dF~~vfgmsr 14 (35)
T d1yu8x1 3 DEDFKAVFGMTR 14 (35)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCCCH
Confidence 678888888875
No 3
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.87 E-value=22 Score=23.53 Aligned_cols=12 Identities=25% Similarity=0.742 Sum_probs=10.0
Q ss_pred HHhhhhhcccch
Q 012775 169 EEEFQRIVGVSG 180 (456)
Q Consensus 169 EdDFk~VVGIS~ 180 (456)
|+||..|.|+|-
T Consensus 4 d~dF~~vFgmsr 15 (36)
T d1unda_ 4 EQDFVSVFGITR 15 (36)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCcCH
Confidence 688999998875
No 4
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=11.98 E-value=48 Score=23.56 Aligned_cols=14 Identities=43% Similarity=0.714 Sum_probs=11.4
Q ss_pred chhHHHHHHHHHHH
Q 012775 45 LEQLHRFIFVMAVT 58 (456)
Q Consensus 45 LHQLHIFIFVLAv~ 58 (456)
+--++.|+|+||++
T Consensus 14 lva~~~fL~~LAl~ 27 (52)
T d1xrda1 14 LVGLATFLFVLALL 27 (52)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44589999999975
No 5
>d1ug0a_ a.217.1.1 (A:) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.21 E-value=62 Score=24.41 Aligned_cols=53 Identities=17% Similarity=0.001 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHhcccCcccccc--cccCCCcccccC-chHHHHHHHHHHHhhhHHHHHHHHHHHhh
Q 012775 216 SKLQHVIATLALENAGITGYFAGAK--LKPRDELFWFNK-PELMLSLIHFILFQNAFELASFFWFWWQF 281 (456)
Q Consensus 216 tKLq~IIt~LAlei~e~~~~~~G~~--vkpsD~lFWF~r-P~llL~LIHfiLFQNAFelAfF~W~~~~f 281 (456)
.++..||.++|.=+++.....+-.+ =+.+|..|||=+ | +.=.-+|+-|-+++|
T Consensus 25 ~~~~~iI~~tA~~Vak~G~~fE~~l~~k~~~np~F~FL~d~-------------~~~~~~YY~~kl~e~ 80 (88)
T d1ug0a_ 25 AETRRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTFLHDK-------------NSREFLYYRRKVAEI 80 (88)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHTTTCSSSHHHHCS-------------SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHhccCCCCceeeCCC-------------CCCCcHHHHHHHHHH
Confidence 3688999999999887432222222 146788899842 3 333336666766665
No 6
>d1yu5x1 a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=7.43 E-value=55 Score=24.14 Aligned_cols=13 Identities=23% Similarity=0.749 Sum_probs=11.4
Q ss_pred HHhhhhhcccchh
Q 012775 169 EEEFQRIVGVSGP 181 (456)
Q Consensus 169 EdDFk~VVGIS~~ 181 (456)
++||+.|.|+|.-
T Consensus 35 d~dF~~vFgms~~ 47 (67)
T d1yu5x1 35 DEDFKAVFGMTRS 47 (67)
T ss_dssp HHHHHHHHSSCHH
T ss_pred HHHHHHHHCcCHH
Confidence 8999999999863
No 7
>d1qzpa_ a.14.1.1 (A:) Dematin {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.15 E-value=60 Score=24.02 Aligned_cols=13 Identities=31% Similarity=0.606 Sum_probs=11.3
Q ss_pred HHhhhhhcccchh
Q 012775 169 EEEFQRIVGVSGP 181 (456)
Q Consensus 169 EdDFk~VVGIS~~ 181 (456)
++||+.|.|+|..
T Consensus 36 d~dF~~vFgms~~ 48 (68)
T d1qzpa_ 36 AEDFSRVFAMSPE 48 (68)
T ss_dssp HHHHHHHSSSCHH
T ss_pred HHHHHHHHCcCHH
Confidence 7899999999864
No 8
>d1x4oa1 a.217.1.1 (A:8-72) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.74 E-value=1e+02 Score=21.78 Aligned_cols=36 Identities=17% Similarity=0.063 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHhcccCccccccc--ccCCCccccc
Q 012775 216 SKLQHVIATLALENAGITGYFAGAKL--KPRDELFWFN 251 (456)
Q Consensus 216 tKLq~IIt~LAlei~e~~~~~~G~~v--kpsD~lFWF~ 251 (456)
.++..||.++|.-+++.....+-.+. +-+|--|||=
T Consensus 8 ~~~~~iI~~tA~~Vak~G~~fE~~l~~k~~~np~F~FL 45 (65)
T d1x4oa1 8 EEAKNLAEKLARFIADGGPEVETIALQNNRENQAFSFL 45 (65)
T ss_dssp HHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHCSSTTTT
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHhccCCCCceee
Confidence 36789999999999874433332221 3456678883
No 9
>d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=6.53 E-value=45 Score=25.81 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=19.9
Q ss_pred HHhhhhhcccchhHHHHHHHHhhhc------------cCCcchhhhh
Q 012775 169 EEEFQRIVGVSGPLWGFVVAFMLFN------------VKGSNLYFWI 203 (456)
Q Consensus 169 EdDFk~VVGIS~~LW~~vviFlLln------------v~Gw~~yfWl 203 (456)
|+|.....||..-- +==++|.|.+ -.||++|+|-
T Consensus 36 De~iA~~tgi~in~-VRk~Ly~L~~~~L~~y~R~kd~~~gw~~Y~W~ 81 (88)
T d1q1ha_ 36 DEEIANQLNIKVND-VRKKLNLLEEQGFVSYRKTRDKDSGWFIYYWK 81 (88)
T ss_dssp HHHHHHTTTSCHHH-HHHHHHHHHHHTSCEEEEEC---CCCCEEEEE
T ss_pred HHHHHHHhCCcHHH-HHHHHHHHHhCCceEEEEeecCCCCcEEEEEE
Confidence 55666667766532 1123555554 2599999994
No 10
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.40 E-value=1.4e+02 Score=19.56 Aligned_cols=13 Identities=38% Similarity=0.590 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHH
Q 012775 50 RFIFVMAVTHISY 62 (456)
Q Consensus 50 IFIFVLAv~HV~Y 62 (456)
.+||||||.--.|
T Consensus 22 Llifvl~vLFssY 34 (37)
T d2axtl1 22 LLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5799999876665
Done!