BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012776
(456 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZHT|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With 7-Hydroxycholesterol
pdb|1ZHW|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With 20-hydroxycholesterol
pdb|1ZHX|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With 25-Hydroxycholesterol
pdb|1ZHY|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With Cholesterol
pdb|1ZHZ|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With Ergosterol
Length = 438
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 131/318 (41%), Gaps = 45/318 (14%)
Query: 116 ECEDPYM-RLVYASSWALSI----YFAYRRAW----KPFNPVLGETF-------EMVNHG 159
E E P + R++ + W +S Y + + KP NP LGE F E G
Sbjct: 77 EVESPELARMLAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFG 136
Query: 160 GVTFIAEQVSHHPPMSAGHAENEHFIYDVT--SKLRTKFLGN-SIDVYPVGRTRVTLKRD 216
++EQVSHHPP++A N+ + ++++ F + + V G T + +K +
Sbjct: 137 ETVLLSEQVSHHPPVTAFSIFNDKNKVKLQGYNQIKASFTKSLMLTVKQFGHTMLDIKDE 196
Query: 217 GVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYFQPCGWFGAGRYEVDGY 276
+ + PPP + ++ +++ G + + +TG V+ F G+F +
Sbjct: 197 SYL--VTPPPLHIEGILVASPFVELEGKSYIQS-STGLLCVIEFSGRGYFSGKKNSFKAR 253
Query: 277 VY----DAAEQPKILMT--GKWNESMSYQPCDSEGEPLPGTELKEVWRVADAPEDDKYQY 330
+Y D+ ++ K L T G+W+ S + + E + + A P +
Sbjct: 254 IYKDSKDSKDKEKALYTISGQWSGSSKIIKANKKEES------RLFYDAARIPAEH---- 303
Query: 331 TYFTHKLNSFDTAPKKLLPSDSRLRPDRYALEKGDLSKAGSEKSRLEERQRAEKRIREAK 390
LN + L S A++ GD + K+ LEE QR ++ EAK
Sbjct: 304 ------LNVKPLEEQHPLESRKAWYDVAGAIKLGDFNLIAKTKTELEETQRELRKEEEAK 357
Query: 391 DDMFTPKWF-DLSDEVTP 407
+ +WF D VTP
Sbjct: 358 GISWQRRWFKDFDYSVTP 375
>pdb|3SPW|A Chain A, Structure Of Osh4pKES1P IN COMPLEX WITH
PHOSPHATIDYLINOSITOL 4- Phosphate
pdb|3SPW|B Chain B, Structure Of Osh4pKES1P IN COMPLEX WITH
PHOSPHATIDYLINOSITOL 4- Phosphate
Length = 436
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 131/318 (41%), Gaps = 45/318 (14%)
Query: 116 ECEDPYM-RLVYASSWALSI----YFAYRRAW----KPFNPVLGETF-------EMVNHG 159
E E P + R++ + W +S Y + + KP NP LGE F E G
Sbjct: 75 EVESPELARMLAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFG 134
Query: 160 GVTFIAEQVSHHPPMSAGHAENEHFIYDVT--SKLRTKFLGN-SIDVYPVGRTRVTLKRD 216
++EQVSHHPP++A N+ + ++++ F + + V G T + +K +
Sbjct: 135 ETVLLSEQVSHHPPVTAFSIFNDKNKVKLQGYNQIKASFTKSLMLTVKQFGHTMLDIKDE 194
Query: 217 GVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYFQPCGWFGAGRYEVDGY 276
+ + PPP + ++ +++ G + + +TG V+ F G+F +
Sbjct: 195 SYL--VTPPPLHIEGILVASPFVELEGKSYIQS-STGLLCVIEFSGRGYFSGKKNSFKAR 251
Query: 277 VY----DAAEQPKILMT--GKWNESMSYQPCDSEGEPLPGTELKEVWRVADAPEDDKYQY 330
+Y D+ ++ K L T G+W+ S + + E + + A P +
Sbjct: 252 IYKDSKDSKDKEKALYTISGQWSGSSKIIKANKKEES------RLFYDAARIPAEH---- 301
Query: 331 TYFTHKLNSFDTAPKKLLPSDSRLRPDRYALEKGDLSKAGSEKSRLEERQRAEKRIREAK 390
LN + L S A++ GD + K+ LEE QR ++ EAK
Sbjct: 302 ------LNVKPLEEQHPLESRKAWYDVAGAIKLGDFNLIAKTKTELEETQRELRKEEEAK 355
Query: 391 DDMFTPKWF-DLSDEVTP 407
+ +WF D VTP
Sbjct: 356 GISWQRRWFKDFDYSVTP 373
>pdb|1ZI7|A Chain A, Structure Of Truncated Yeast Oxysterol Binding Protein
Osh4
pdb|1ZI7|B Chain B, Structure Of Truncated Yeast Oxysterol Binding Protein
Osh4
pdb|1ZI7|C Chain C, Structure Of Truncated Yeast Oxysterol Binding Protein
Osh4
Length = 406
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 73/315 (23%), Positives = 129/315 (40%), Gaps = 42/315 (13%)
Query: 116 ECEDPYM-RLVYASSWALSI----YFAYRRAW----KPFNPVLGETF-------EMVNHG 159
E E P + R++ + W +S Y + + KP NP LGE F E G
Sbjct: 48 EVESPELARMLAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFG 107
Query: 160 GVTFIAEQVSHHPPMSAGHAENEHFIYDVT--SKLRTKFLGN-SIDVYPVGRTRVTLKRD 216
++EQVSHHPP++A N+ + ++++ F + + V G T + +K +
Sbjct: 108 ETVLLSEQVSHHPPVTAFSIFNDKNKVKLQGYNQIKASFTKSLMLTVKQFGHTMLDIKDE 167
Query: 217 GVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYFQPC-GWFGAGRYEVDG 275
+ + PPP + ++ +++ G + + +TG V+ F G + + +
Sbjct: 168 SYL--VTPPPLHIEGILVASPFVELEGKSYIQS-STGLLCVIEFSGVDGKKNSFKARIYK 224
Query: 276 YVYDAAEQPKILMT--GKWNESMSYQPCDSEGEPLPGTELKEVWRVADAPEDDKYQYTYF 333
D+ ++ K L T G+W+ S + + E + + A P +
Sbjct: 225 DSKDSKDKEKALYTISGQWSGSSKIIKANKKEES------RLFYDAARIPAE-------- 270
Query: 334 THKLNSFDTAPKKLLPSDSRLRPDRYALEKGDLSKAGSEKSRLEERQRAEKRIREAKDDM 393
LN + L S A++ GD + K+ LEE QR ++ EAK
Sbjct: 271 --HLNVKPLEEQHPLESRKAWYDVAGAIKLGDFNLIAKTKTELEETQRELRKEEEAKGIS 328
Query: 394 FTPKWF-DLSDEVTP 407
+ +WF D VTP
Sbjct: 329 WQRRWFKDFDYSVTP 343
>pdb|3KG6|A Chain A, Dehydratase Domain From Curf Module Of Curacin Polyketide
Synthase
pdb|3KG6|B Chain B, Dehydratase Domain From Curf Module Of Curacin Polyketide
Synthase
pdb|3KG6|C Chain C, Dehydratase Domain From Curf Module Of Curacin Polyketide
Synthase
pdb|3KG6|D Chain D, Dehydratase Domain From Curf Module Of Curacin Polyketide
Synthase
Length = 285
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Query: 266 FGAGRYEVDGYVYDAAEQPKILMTGKWNESMSYQPCDS-EGEPLPGTELKEVWRVADAPE 324
FG + GY+ AA K L T + E + D + +P TE+K V V E
Sbjct: 40 FGKVLFPSTGYLEIAASAGKSLFTSQ--EQVVVSDVDILQSLVIPETEIKTVQTVVSFAE 97
Query: 325 DDKYQYTYFTHKLNSFDTAPKKLLPSDSRL--RPDRYALEKGDLSKAGSEKSR---LEER 379
++ Y++ F+ P+ +L + ++ P R + K DL K +E S+ +EE
Sbjct: 98 NNSYKFEIFSPSEGENQQTPQWVLHAQGKIYTEPTRNSQAKIDLEKYQAECSQAIEIEEH 157
Query: 380 QR 381
R
Sbjct: 158 YR 159
>pdb|3CUC|A Chain A, Crystal Structure Of A Fic Domain Containing Signaling
Protein (Bt_2513) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.71 A Resolution
pdb|3CUC|B Chain B, Crystal Structure Of A Fic Domain Containing Signaling
Protein (Bt_2513) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.71 A Resolution
Length = 291
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 68 NYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYS 108
+YWK + G D++ + + + S PNSVL E+ Y+
Sbjct: 111 DYWKNAKTPDGQDIRXQIKVGEYKSRPNSVLTATGEVFSYA 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,112,761
Number of Sequences: 62578
Number of extensions: 672443
Number of successful extensions: 1238
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1227
Number of HSP's gapped (non-prelim): 9
length of query: 456
length of database: 14,973,337
effective HSP length: 102
effective length of query: 354
effective length of database: 8,590,381
effective search space: 3040994874
effective search space used: 3040994874
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)