Query 012776
Match_columns 456
No_of_seqs 256 out of 1028
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 16:00:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012776.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012776hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zhx_A KES1 protein; oxysterol 100.0 9E-90 3.1E-94 716.7 33.2 319 64-404 8-371 (438)
2 4g3b_A Alpha4F3D; alpha helix, 48.3 22 0.00076 21.3 3.3 21 369-389 3-23 (26)
3 3twe_A Alpha4H; unknown functi 42.6 31 0.0011 20.9 3.4 21 369-389 3-23 (27)
4 2c5i_P Vacuolar protein sortin 39.1 7.6 0.00026 24.5 0.4 11 165-175 1-11 (29)
5 2w6b_A RHO guanine nucleotide 26.7 55 0.0019 23.8 3.2 19 369-387 26-44 (56)
6 3sbu_A Hypothetical NTF2-like 20.1 79 0.0027 30.1 3.8 41 223-263 205-247 (261)
7 2lll_A Lamin-B2; immunoglobuli 19.1 3.6E+02 0.012 23.1 7.6 81 197-287 32-124 (139)
8 1ifr_A Lamin A/C; immunoglobul 15.9 4.6E+02 0.016 21.7 7.3 80 198-287 18-109 (121)
9 1ufg_A Lamin A, nuclear lamin; 14.8 5.6E+02 0.019 22.1 7.9 61 217-287 76-140 (151)
10 3syn_E ATP-binding protein YLX 13.9 80 0.0027 18.4 1.3 19 363-381 3-21 (23)
No 1
>1zhx_A KES1 protein; oxysterol,sterol binding protein, lipid binding protein; HET: HC3; 1.50A {Saccharomyces cerevisiae} SCOP: d.338.1.1 PDB: 1zht_A* 1zhw_A* 1zhy_A* 1zhz_A* 3spw_A* 1zi7_A
Probab=100.00 E-value=9e-90 Score=716.75 Aligned_cols=319 Identities=24% Similarity=0.404 Sum_probs=285.5
Q ss_pred ccchhHHHHHHhccCc---ccCCCcccCcccccccchHHHhhhccccHHHHhhhhcCC----------C------hHHHH
Q 012776 64 EERDNYWKMMQKYIGA---DVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECE----------D------PYMRL 124 (456)
Q Consensus 64 e~~~siw~~lk~~IG~---DLts~vslPv~i~EP~S~LQr~ae~~ey~~lL~~Aa~~~----------d------p~eRm 124 (456)
..+.|+|+.++++||+ ||++ |+|||+||||+|+||+++++|+|++||++|+..+ | |++||
T Consensus 8 ~~~~s~w~~~lK~i~k~g~DLSk-IslPv~i~EP~SlLE~~~~~~e~~dLL~~aa~~~~~~~~a~~~~D~~~~~~p~eRm 86 (438)
T 1zhx_A 8 YASSSSWTSFLKSIASFNGDLSS-LSAPPFILSPISLTEFSQYWAEHPELFLEPSFINDDNYKEHCLIDPEVESPELARM 86 (438)
T ss_dssp HTTSHHHHHHHHTTTTCCSCGGG-SCCCGGGEEEEEGGGGGGGGCSCHHHHHGGGGCCTTTGGGSCTTCTTCSCHHHHHH
T ss_pred cccccHHHHHHHHhhhcCCChhh-cccCchhcCCccHHHHHHHhhhhHHHHhhhhhcccccccccccCCccccCCHHHHH
Confidence 3568999888778865 9975 9999999999999999999999999999988766 9 99999
Q ss_pred HHHHHHHhhhhhh-c-------cccCCCCCCCCCCeEEEEecC------c-EEEEeeecccCCcceEEEEeCc--eEEEE
Q 012776 125 VYASSWALSIYFA-Y-------RRAWKPFNPVLGETFEMVNHG------G-VTFIAEQVSHHPPMSAGHAENE--HFIYD 187 (456)
Q Consensus 125 ~~V~af~iS~~~~-~-------~r~~KPfNPILGETfe~~~~~------g-~~fiaEQVSHHPPISAf~~e~~--~~~~~ 187 (456)
++|++|+||+|+. + .+.+|||||||||||+|.+++ | ++|||||||||||||||||+|+ +|.++
T Consensus 87 ~~V~af~lS~~~~~y~~~~~~~~~~kKPfNPiLGETFe~~~~d~~~~~~g~~~~iaEQVSHHPPISA~~~e~~~~g~~~~ 166 (438)
T 1zhx_A 87 LAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFGETVLLSEQVSHHPPVTAFSIFNDKNKVKLQ 166 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCEEECCCTTCEEEEEECCTTCTTTCCEEEEEEEEEETTEEEEEEEEETTTTEEEE
T ss_pred HHHHHHHHhhhhhhcccccccccccccCcCCcccceEEEEecCccCCCCCcEEEEEEeccCCCCeeEEEEEcCCCCEEEE
Confidence 9999999999864 2 578999999999999999854 5 8999999999999999999996 58999
Q ss_pred EeeeeeeeEEee-EEEEEEeeEEEEEEcCCcEEEEEeCCCceeeeeeccceeEecCCcEEEEeCCCCCEEEEEEeeCccc
Q 012776 188 VTSKLRTKFLGN-SIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYFQPCGWF 266 (456)
Q Consensus 188 ~~~~~kskF~G~-Sv~v~~~G~~~l~l~~~ge~Y~~~~P~~~v~nii~G~~~ve~~G~~~I~~~~tg~~a~i~F~~~~~~ 266 (456)
++..+++||+|+ ||+|.+.|.++|+|. ||+|+|++|+++|+|||+|++|+|++|+|+|+| +||++|+|+|+++|||
T Consensus 167 g~~~~kskF~G~~Sv~v~~~G~~~l~l~--~E~Y~~t~P~~~v~gIi~G~~~vE~~G~~~I~~-~tg~~~~l~F~~kg~f 243 (438)
T 1zhx_A 167 GYNQIKASFTKSLMLTVKQFGHTMLDIK--DESYLVTPPPLHIEGILVASPFVELEGKSYIQS-STGLLCVIEFSGRGYF 243 (438)
T ss_dssp EEEEEEEEECTTCCEEEEEECCEEEEET--TEEEEEECCCEEEECTTTTCCEEEECSEEEEEE-TTSCEEEEEEECSSSS
T ss_pred EEeeeEEEEcCceEEEEEcceEEEEEEC--CcEEEEecCcEEEEEEEecceeEecCCeEEEEc-CCCCEEEEEEcCCCCc
Confidence 999999999999 999999999999997 899999999999999999999999999999999 7999999999999999
Q ss_pred cCceeEEEEEEECC------CCCceEEEeeeecceeeeeeCCCCCCcCCCCCceEEEeeccCCCCCccccceeecccCCC
Q 012776 267 GAGRYEVDGYVYDA------AEQPKILMTGKWNESMSYQPCDSEGEPLPGTELKEVWRVADAPEDDKYQYTYFTHKLNSF 340 (456)
Q Consensus 267 g~~~~~V~G~V~~~------~g~~~~~i~G~W~~~l~~~~~~~~g~~l~~~~~~~lW~~~~~p~~~~~~ft~fa~~lN~~ 340 (456)
|++.+.|+|.|++. +++++++|+|+|++.|++...... .+...+|++.+.|... + .+.
T Consensus 244 ~g~~n~v~G~I~~~~~~~~~~~~~l~~i~G~W~~~l~i~~~~~~------~~~~~~~~~~~~~~~~------~--~v~-- 307 (438)
T 1zhx_A 244 SGKKNSFKARIYKDSKDSKDKEKALYTISGQWSGSSKIIKANKK------EESRLFYDAARIPAEH------L--NVK-- 307 (438)
T ss_dssp CSSSSEEEEEEESSTTGGGCGGGCSEEEEEETTSEEEEEETTCG------GGCEEEEETTTSCCCC------C--BCC--
T ss_pred CCCccEEEEEEEcCCcccCCCCcEEEEEEEEEcceEEEEeCCCC------ccceEEeccCCCCCcc------c--cCC--
Confidence 99999999999985 567899999999999999765321 1146799988765421 1 121
Q ss_pred CCCCCcCCCCCccc--chhhHHHHcCCchhhHHHHHHHHHHHHHHHHHHHhcCCCceecceeecCC
Q 012776 341 DTAPKKLLPSDSRL--RPDRYALEKGDLSKAGSEKSRLEERQRAEKRIREAKDDMFTPKWFDLSDE 404 (456)
Q Consensus 341 ~~~~~~l~PtDSR~--R~D~~aLe~Gd~~~A~~eK~~LEe~QR~~rk~R~~~~~~w~Pr~F~~~~d 404 (456)
+ ...++|+|||+ |||++||++||++.|+++|.+|||+||++||+|+++|++|+||||++.++
T Consensus 308 -p-~e~q~ptdSR~~Wr~d~~ale~Gd~d~A~~eK~rLEe~QR~~rk~re~~g~~w~Pr~F~~~~~ 371 (438)
T 1zhx_A 308 -P-LEEQHPLESRKAWYDVAGAIKLGDFNLIAKTKTELEETQRELRKEEEAKGISWQRRWFKDFDY 371 (438)
T ss_dssp -C-GGGCCTTBHHHHTHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSEEEEEC
T ss_pred -C-hhhCCCcccchhhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccceEEECCc
Confidence 1 13568999998 89999999999999999999999999999999999999999999999876
No 2
>4g3b_A Alpha4F3D; alpha helix, de novo designed, fluorinated protein, coiled-C NOVO protein; HET: 6FL; 1.19A {Synthetic} PDB: 4g4l_A* 3twg_A*
Probab=48.26 E-value=22 Score=21.31 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 012776 369 AGSEKSRLEERQRAEKRIREA 389 (456)
Q Consensus 369 A~~eK~~LEe~QR~~rk~R~~ 389 (456)
|.+.-..||+.|...||.|++
T Consensus 3 ade~ykeled~qerlrk~rkk 23 (26)
T 4g3b_A 3 ADEXYKELEDXQERLRKXRKK 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 556667899999988888875
No 3
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=42.62 E-value=31 Score=20.85 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 012776 369 AGSEKSRLEERQRAEKRIREA 389 (456)
Q Consensus 369 A~~eK~~LEe~QR~~rk~R~~ 389 (456)
|.+.-..||+-|...||.|++
T Consensus 3 adelykeledlqerlrklrkk 23 (27)
T 3twe_A 3 ADELYKELEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566677899999988988875
No 4
>2c5i_P Vacuolar protein sorting protein 51; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.3A {Saccharomyces cerevisiae}
Probab=39.09 E-value=7.6 Score=24.50 Aligned_cols=11 Identities=45% Similarity=0.697 Sum_probs=3.3
Q ss_pred eeecccCCcce
Q 012776 165 AEQVSHHPPMS 175 (456)
Q Consensus 165 aEQVSHHPPIS 175 (456)
|||+||--|+-
T Consensus 1 aeqItHKK~lr 11 (29)
T 2c5i_P 1 AEQISHKKSLR 11 (29)
T ss_dssp ------CCCCC
T ss_pred CccccccCCcc
Confidence 68888887763
No 5
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=26.66 E-value=55 Score=23.82 Aligned_cols=19 Identities=42% Similarity=0.487 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 012776 369 AGSEKSRLEERQRAEKRIR 387 (456)
Q Consensus 369 A~~eK~~LEe~QR~~rk~R 387 (456)
-.+.|.-||+.||+++++.
T Consensus 26 ~k~m~k~lEeEqkARk~LE 44 (56)
T 2w6b_A 26 NKKMKKSLEEEQRARKDLE 44 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3467788999999988764
No 6
>3sbu_A Hypothetical NTF2-like protein; cystatin-like, structural genomics, joint center for structu genomics, JCSG, protein structure initiative; HET: MLY; 2.15A {Bacteroides fragilis}
Probab=20.11 E-value=79 Score=30.07 Aligned_cols=41 Identities=20% Similarity=0.385 Sum_probs=32.1
Q ss_pred eCCCceeeeeeccceeE-ecCCc-EEEEeCCCCCEEEEEEeeC
Q 012776 223 VPPPTKVHNLIFGRTWI-DSPGD-MVMTNLTTGDKVVLYFQPC 263 (456)
Q Consensus 223 ~~P~~~v~nii~G~~~v-e~~G~-~~I~~~~tg~~a~i~F~~~ 263 (456)
.+|...+.||++|..+. +...+ +.|..-.+|+..++.|+..
T Consensus 205 ~lP~~~i~NI~YGQky~~~s~~KIl~~rGi~NG~e~~l~Fkk~ 247 (261)
T 3sbu_A 205 ALPADXLSNINYGQQNDDNASHKILALXGIGNGFSNILYFQRX 247 (261)
T ss_dssp CCCSSEEEEEESSCCCCTTCSEEEEEEEESSSCCEEEEEEEEE
T ss_pred ccCcccceeeeccccccCCCCceEEEEEeecCceeEEEEEeec
Confidence 46899999999999994 44333 4456778999999999865
No 7
>2lll_A Lamin-B2; immunoglobulin-like fold, structural protein, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=19.07 E-value=3.6e+02 Score=23.09 Aligned_cols=81 Identities=11% Similarity=0.145 Sum_probs=46.2
Q ss_pred EeeEEEEEEeeEEEEEEc--------CCcEEEEEeCCCceeeeeeccceeEecCCcEEEEeCCCCCE----EEEEEeeCc
Q 012776 197 LGNSIDVYPVGRTRVTLK--------RDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDK----VVLYFQPCG 264 (456)
Q Consensus 197 ~G~Sv~v~~~G~~~l~l~--------~~ge~Y~~~~P~~~v~nii~G~~~ve~~G~~~I~~~~tg~~----a~i~F~~~~ 264 (456)
.|.+|.+.+.|...+.|. ...+...|++|..++ +.-.+.++|-....|-. ..|.++...
T Consensus 32 ~GefV~L~N~s~~~~~L~GW~L~r~v~g~~~~~y~Fp~~~~---------L~pg~~VtIws~~~g~~~~pp~dlv~~~q~ 102 (139)
T 2lll_A 32 EGKFVQLKNNSDKDQSLGNWRIKRQVLEGEEIAYKFTPKYI---------LRAGQMVTVWAAGAGVAHSPPSTLVWKGQS 102 (139)
T ss_dssp SCSEEEEEECSSSCEECSSCEEEEEETTSCEEEEECCTTCE---------ECTTCEEEEEEGGGTCCCBTTTEEEETTCS
T ss_pred CCCEEEEEECCCCccccCCCEEEEecCCCccEEEEECCCcE---------ECCCCEEEEEeCCCCCCCCCchhEEEeccc
Confidence 356677777665444432 233557788886332 23355667766544432 357776554
Q ss_pred cccCceeEEEEEEECCCCCceEE
Q 012776 265 WFGAGRYEVDGYVYDAAEQPKIL 287 (456)
Q Consensus 265 ~~g~~~~~V~G~V~~~~g~~~~~ 287 (456)
-||.+. .+...++|++|+.+..
T Consensus 103 sWg~G~-~~~T~L~n~~GEevAt 124 (139)
T 2lll_A 103 SWGTGE-SFRTVLVNADGEEVAM 124 (139)
T ss_dssp SSSCCS-EEEEEEECTTSCEEEE
T ss_pred ccCCCC-CEEEEEECCCCCEEEE
Confidence 344333 3556789999987654
No 8
>1ifr_A Lamin A/C; immunoglobulin, immune system; 1.40A {Homo sapiens} SCOP: b.1.16.1 PDB: 1ivt_A 3gef_A
Probab=15.86 E-value=4.6e+02 Score=21.73 Aligned_cols=80 Identities=11% Similarity=0.195 Sum_probs=43.2
Q ss_pred eeEEEEEEeeEEEEEEc--------CCcEEEEEeCCCceeeeeeccceeEecCCcEEEEeCCCCCE----EEEEEeeCcc
Q 012776 198 GNSIDVYPVGRTRVTLK--------RDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDK----VVLYFQPCGW 265 (456)
Q Consensus 198 G~Sv~v~~~G~~~l~l~--------~~ge~Y~~~~P~~~v~nii~G~~~ve~~G~~~I~~~~tg~~----a~i~F~~~~~ 265 (456)
|.+|.+.+.|...+.|. ..++...|++|..++ +.-...++|-....|.. ..|.++....
T Consensus 18 g~fV~l~N~s~~~~~L~gW~l~r~v~~~~~~~y~Fp~~~~---------L~pg~~vtIws~~~g~~~~pp~dlv~~~~~s 88 (121)
T 1ifr_A 18 GKFVRLRNKSNEDQSMGNWQIKRQNGDDPLLTYRFPPKFT---------LKAGQVVTIWAAGAGATHSPPTDLVWKAQNT 88 (121)
T ss_dssp SSEEEEEECSSSCEECTTCEEEEEETTSCCEEEECCSSCE---------ECTTCEEEEEETTSSCCCBTTTEEEETTCSC
T ss_pred CCEEEEEeCCCCccccCCCEEEEEcCCCccEEEEeCCCcE---------ECCCCEEEEEeCCCCCCCCCchhEEEecccc
Confidence 44555655554333331 223446777776322 23356677777655432 2577755443
Q ss_pred ccCceeEEEEEEECCCCCceEE
Q 012776 266 FGAGRYEVDGYVYDAAEQPKIL 287 (456)
Q Consensus 266 ~g~~~~~V~G~V~~~~g~~~~~ 287 (456)
||.+. .+...++|++|+.+..
T Consensus 89 Wg~g~-~~~t~L~n~~GeevA~ 109 (121)
T 1ifr_A 89 WGCGN-SLRTALINSTGEEVAM 109 (121)
T ss_dssp CCCSS-CEEEEEECTTSCEEEE
T ss_pred cCCCC-CeEEEEECCCCCEEEE
Confidence 44333 3556788998886543
No 9
>1ufg_A Lamin A, nuclear lamin; immunoglobulin like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.1.16.1
Probab=14.80 E-value=5.6e+02 Score=22.15 Aligned_cols=61 Identities=10% Similarity=0.183 Sum_probs=34.3
Q ss_pred cEEEEEeCCCceeeeeeccceeEecCCcEEEEeCCCCCE----EEEEEeeCccccCceeEEEEEEECCCCCceEE
Q 012776 217 GVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDK----VVLYFQPCGWFGAGRYEVDGYVYDAAEQPKIL 287 (456)
Q Consensus 217 ge~Y~~~~P~~~v~nii~G~~~ve~~G~~~I~~~~tg~~----a~i~F~~~~~~g~~~~~V~G~V~~~~g~~~~~ 287 (456)
++...|++|..++ +.-...++|-....|.. ..|.++...-|+.+. .+...++|++|+.+..
T Consensus 76 ~~~~~y~Fp~~~~---------L~pg~tVtIws~~~g~~~~pp~dlv~k~q~sWg~G~-~~~T~L~n~~GEevA~ 140 (151)
T 1ufg_A 76 DPLMTYRFPPKFT---------LKAGQVVTIWASGAGATHSPPTDLVWKAQNTWGCGS-SLRTALINSTGEEVAM 140 (151)
T ss_dssp SCCEEEECCTTCE---------ECTTCEEEEEESSSSCCCCTTTEEEECSSSCSCCSS-EEEEEEECSSSCEEEE
T ss_pred CccEEEEECCCcE---------ECCCCEEEEEeCCCCCCCCCchhEEEecccccCCCC-CEEEEEECCCCCEEEE
Confidence 3456777776332 23355666666544422 357776554344333 3556789998886543
No 10
>3syn_E ATP-binding protein YLXH; SRP GTPase, flagellum, protein transport, biosynthetic prote GTPase activating protein, type 3 secretion system; HET: GDP; 3.06A {Bacillus subtilis}
Probab=13.91 E-value=80 Score=18.38 Aligned_cols=19 Identities=21% Similarity=0.483 Sum_probs=13.8
Q ss_pred cCCchhhHHHHHHHHHHHH
Q 012776 363 KGDLSKAGSEKSRLEERQR 381 (456)
Q Consensus 363 ~Gd~~~A~~eK~~LEe~QR 381 (456)
.+.+|.|.....++|.+.|
T Consensus 3 mnrydqaatlrakmekrer 21 (23)
T 3syn_E 3 MNRYDQAATLRAKMEKRER 21 (26)
T ss_pred cchHHHHHHHHHHHHHHhh
Confidence 3467888888888887665
Done!