Query 012778
Match_columns 456
No_of_seqs 206 out of 461
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 16:03:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012778.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012778hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2aze_B Transcription factor E2 100.0 2.5E-36 8.7E-41 259.2 9.8 102 208-316 4-105 (106)
2 1cf7_A Protein (transcription 100.0 2.9E-29 9.8E-34 204.2 6.2 73 129-201 2-75 (76)
3 1cf7_B Protein (transcription 99.3 1.2E-12 4.1E-17 110.9 3.8 65 136-203 9-92 (95)
4 2xvc_A ESCRT-III, SSO0910; cel 93.2 0.074 2.5E-06 41.6 3.7 44 144-188 13-56 (59)
5 3deu_A Transcriptional regulat 92.5 0.61 2.1E-05 40.3 9.1 37 155-191 66-102 (166)
6 1oyi_A Double-stranded RNA-bin 92.3 0.14 4.7E-06 42.2 4.4 61 136-199 12-72 (82)
7 1qgp_A Protein (double strande 92.1 0.13 4.4E-06 40.9 3.9 55 144-198 17-72 (77)
8 1r7j_A Conserved hypothetical 91.6 0.4 1.4E-05 39.3 6.5 46 141-190 8-53 (95)
9 1qbj_A Protein (double-strande 91.4 0.19 6.3E-06 40.7 4.2 57 143-199 12-69 (81)
10 2oqg_A Possible transcriptiona 91.2 1.3 4.3E-05 35.5 9.0 47 145-194 25-71 (114)
11 3r0a_A Putative transcriptiona 91.2 0.55 1.9E-05 39.5 7.1 46 145-190 30-75 (123)
12 2heo_A Z-DNA binding protein 1 91.1 0.22 7.4E-06 38.3 4.1 52 142-194 11-62 (67)
13 3jw4_A Transcriptional regulat 88.8 1.9 6.6E-05 35.8 8.6 46 146-191 46-91 (148)
14 3eco_A MEPR; mutlidrug efflux 88.7 2.8 9.5E-05 34.2 9.3 46 145-190 35-80 (139)
15 3bro_A Transcriptional regulat 87.3 2.8 9.6E-05 34.1 8.5 47 145-191 38-84 (141)
16 2htj_A P fimbrial regulatory p 87.2 0.77 2.6E-05 35.6 4.8 43 145-189 4-46 (81)
17 2gxg_A 146AA long hypothetical 85.9 1.5 5.1E-05 36.0 6.1 37 155-191 48-84 (146)
18 1ku9_A Hypothetical protein MJ 84.9 4.1 0.00014 33.1 8.3 45 145-190 30-74 (152)
19 2a61_A Transcriptional regulat 84.8 1.6 5.5E-05 35.7 5.8 44 146-191 38-81 (145)
20 3qph_A TRMB, A global transcri 84.7 0.4 1.4E-05 47.6 2.4 51 146-199 24-74 (342)
21 4b8x_A SCO5413, possible MARR- 84.3 2.2 7.6E-05 36.2 6.6 45 147-191 41-85 (147)
22 3f6o_A Probable transcriptiona 83.8 1.7 5.7E-05 36.0 5.5 47 145-194 22-68 (118)
23 2kko_A Possible transcriptiona 83.5 2.9 0.0001 34.1 6.8 47 145-194 29-75 (108)
24 1y0u_A Arsenical resistance op 82.8 0.96 3.3E-05 35.9 3.5 48 145-197 35-82 (96)
25 2y75_A HTH-type transcriptiona 82.2 1.5 5.1E-05 36.7 4.6 47 144-190 12-59 (129)
26 3cuo_A Uncharacterized HTH-typ 81.9 1.2 4E-05 34.7 3.6 46 146-193 29-74 (99)
27 1on2_A Transcriptional regulat 81.8 1.3 4.4E-05 37.0 4.1 38 155-192 20-57 (142)
28 3bpv_A Transcriptional regulat 81.4 3.8 0.00013 33.1 6.7 43 146-190 34-76 (138)
29 2hr3_A Probable transcriptiona 81.2 2.4 8.4E-05 34.8 5.5 44 146-190 40-83 (147)
30 1s3j_A YUSO protein; structura 81.2 2.4 8.3E-05 35.1 5.6 37 155-191 49-85 (155)
31 3u2r_A Regulatory protein MARR 80.8 2.2 7.5E-05 36.4 5.3 46 146-191 51-96 (168)
32 2fbh_A Transcriptional regulat 80.5 11 0.00036 30.6 9.2 38 154-191 49-86 (146)
33 3s2w_A Transcriptional regulat 80.4 9.1 0.00031 32.1 9.0 36 156-191 63-98 (159)
34 3nrv_A Putative transcriptiona 80.2 2.9 9.9E-05 34.5 5.7 43 146-190 45-87 (148)
35 2bv6_A MGRA, HTH-type transcri 80.1 0.65 2.2E-05 38.2 1.7 37 155-191 49-85 (142)
36 2d1h_A ST1889, 109AA long hypo 80.0 1 3.5E-05 35.1 2.7 38 155-192 34-71 (109)
37 1sfx_A Conserved hypothetical 79.9 1.2 4E-05 34.6 3.0 45 145-191 24-68 (109)
38 2x4h_A Hypothetical protein SS 79.6 1.9 6.6E-05 35.7 4.4 38 154-191 28-65 (139)
39 3oop_A LIN2960 protein; protei 78.6 7.7 0.00026 31.8 7.8 36 156-191 50-85 (143)
40 1ub9_A Hypothetical protein PH 78.1 4.6 0.00016 31.2 5.9 44 146-191 21-64 (100)
41 3k0l_A Repressor protein; heli 77.7 2.5 8.7E-05 35.8 4.7 37 155-191 58-94 (162)
42 2fa5_A Transcriptional regulat 77.7 9.3 0.00032 31.9 8.1 37 155-191 61-97 (162)
43 1lj9_A Transcriptional regulat 77.3 9 0.00031 31.2 7.8 43 146-190 34-76 (144)
44 2fu4_A Ferric uptake regulatio 77.2 1.4 4.9E-05 33.9 2.7 47 145-191 21-72 (83)
45 3rkx_A Biotin-[acetyl-COA-carb 77.0 2.3 7.9E-05 41.9 4.8 56 144-199 6-62 (323)
46 3bj6_A Transcriptional regulat 76.8 2.4 8.3E-05 35.0 4.2 36 156-191 53-88 (152)
47 3jth_A Transcription activator 76.6 5.1 0.00017 31.5 5.9 38 156-193 35-72 (98)
48 2frh_A SARA, staphylococcal ac 76.6 1.6 5.5E-05 36.2 3.1 45 146-190 42-86 (127)
49 3tgn_A ADC operon repressor AD 76.3 4.5 0.00015 33.1 5.7 44 145-191 42-85 (146)
50 3f6v_A Possible transcriptiona 76.1 3.1 0.00011 36.5 4.9 51 145-198 62-112 (151)
51 1sfu_A 34L protein; protein/Z- 76.0 1.8 6.1E-05 35.2 3.0 61 136-198 10-70 (75)
52 4hbl_A Transcriptional regulat 75.2 12 0.0004 31.1 8.1 36 156-191 54-89 (149)
53 1r1u_A CZRA, repressor protein 75.2 1.9 6.6E-05 34.8 3.1 46 145-193 30-75 (106)
54 1tbx_A ORF F-93, hypothetical 75.1 7.2 0.00025 30.6 6.4 38 155-192 20-61 (99)
55 2qww_A Transcriptional regulat 74.8 3.8 0.00013 34.0 4.9 42 146-189 46-87 (154)
56 3g3z_A NMB1585, transcriptiona 74.3 4.1 0.00014 33.5 5.0 34 157-190 45-78 (145)
57 2eth_A Transcriptional regulat 74.3 3.5 0.00012 34.5 4.6 35 156-190 57-91 (154)
58 2pg4_A Uncharacterized protein 74.1 2.5 8.6E-05 33.3 3.5 53 136-188 8-62 (95)
59 3cjn_A Transcriptional regulat 73.6 9.3 0.00032 31.9 7.1 36 155-190 64-99 (162)
60 2hzt_A Putative HTH-type trans 73.6 2.6 8.9E-05 34.3 3.5 37 155-191 25-62 (107)
61 3bdd_A Regulatory protein MARR 73.5 1.8 6.2E-05 35.1 2.6 36 156-191 44-79 (142)
62 2dk5_A DNA-directed RNA polyme 73.4 3.3 0.00011 34.0 4.1 47 144-190 23-69 (91)
63 1j5y_A Transcriptional regulat 73.1 3 0.0001 37.3 4.2 53 144-198 24-77 (187)
64 3ech_A MEXR, multidrug resista 72.9 17 0.00059 29.7 8.4 44 146-191 42-85 (142)
65 3hsr_A HTH-type transcriptiona 72.9 1.5 5.1E-05 36.3 1.9 38 154-191 47-84 (140)
66 3bja_A Transcriptional regulat 72.7 11 0.00037 30.3 7.1 44 145-190 37-80 (139)
67 2lkp_A Transcriptional regulat 71.6 3.2 0.00011 33.8 3.6 36 156-191 44-79 (119)
68 2cfx_A HTH-type transcriptiona 71.4 3.1 0.00011 35.3 3.6 47 142-190 6-52 (144)
69 3mq0_A Transcriptional repress 71.3 4.7 0.00016 38.3 5.3 49 146-195 35-83 (275)
70 2f2e_A PA1607; transcription f 71.1 1.6 5.5E-05 37.8 1.8 60 132-191 11-71 (146)
71 2p4w_A Transcriptional regulat 71.0 23 0.00078 32.5 9.6 44 145-191 19-62 (202)
72 1a93_B MAX protein, coiled coi 70.8 6.1 0.00021 27.9 4.3 30 207-236 4-33 (34)
73 2rdp_A Putative transcriptiona 70.5 5 0.00017 33.0 4.6 35 156-190 55-89 (150)
74 2fbk_A Transcriptional regulat 69.6 5.9 0.0002 34.3 5.1 36 156-191 85-120 (181)
75 2xrn_A HTH-type transcriptiona 69.5 11 0.00037 34.9 7.2 47 145-192 10-56 (241)
76 2jt1_A PEFI protein; solution 69.4 3.4 0.00012 33.1 3.2 47 144-190 7-57 (77)
77 1u2w_A CADC repressor, cadmium 69.3 3.4 0.00012 34.4 3.4 46 145-192 46-91 (122)
78 3pfi_A Holliday junction ATP-d 69.2 3.6 0.00012 38.7 3.9 55 139-193 261-316 (338)
79 3gpv_A Transcriptional regulat 68.7 7.4 0.00025 34.1 5.5 39 157-199 16-56 (148)
80 2nyx_A Probable transcriptiona 68.6 4.2 0.00014 34.8 3.9 35 156-190 58-92 (168)
81 3pqk_A Biofilm growth-associat 68.6 2.8 9.6E-05 33.4 2.6 45 146-193 28-72 (102)
82 2pex_A Transcriptional regulat 67.9 4.4 0.00015 33.7 3.8 37 155-191 59-95 (153)
83 4ham_A LMO2241 protein; struct 67.6 29 0.001 29.2 8.9 54 142-195 19-77 (134)
84 3nqo_A MARR-family transcripti 67.2 3.7 0.00012 36.2 3.3 46 146-191 46-91 (189)
85 2dbb_A Putative HTH-type trans 67.1 3.9 0.00013 34.7 3.4 50 139-190 7-56 (151)
86 1yyv_A Putative transcriptiona 67.0 2.4 8.4E-05 36.2 2.0 60 132-191 22-83 (131)
87 3kp7_A Transcriptional regulat 66.8 11 0.00037 31.3 6.0 37 154-190 48-84 (151)
88 2fsw_A PG_0823 protein; alpha- 66.5 4.4 0.00015 32.8 3.4 57 132-191 12-73 (107)
89 1xn7_A Hypothetical protein YH 66.5 4.7 0.00016 32.3 3.5 45 144-190 5-49 (78)
90 1i1g_A Transcriptional regulat 66.4 4.2 0.00014 33.8 3.4 45 144-190 7-51 (141)
91 3mkl_A HTH-type transcriptiona 66.2 4.8 0.00016 33.0 3.6 39 142-180 8-46 (120)
92 2p5v_A Transcriptional regulat 66.2 4.4 0.00015 35.0 3.5 50 139-190 8-57 (162)
93 1z7u_A Hypothetical protein EF 66.2 4.1 0.00014 33.4 3.2 36 156-191 34-70 (112)
94 1p6r_A Penicillinase repressor 66.0 4.5 0.00015 31.0 3.2 46 144-191 12-61 (82)
95 3fm5_A Transcriptional regulat 66.0 3.8 0.00013 34.0 3.0 36 156-191 53-88 (150)
96 3e6m_A MARR family transcripti 65.6 3.5 0.00012 34.9 2.7 36 156-191 66-101 (161)
97 3boq_A Transcriptional regulat 65.2 6 0.00021 33.0 4.1 36 155-190 60-95 (160)
98 2jsc_A Transcriptional regulat 64.9 3.3 0.00011 34.4 2.4 44 145-191 25-68 (118)
99 2cg4_A Regulatory protein ASNC 64.3 4.7 0.00016 34.3 3.4 50 139-190 6-55 (152)
100 3oou_A LIN2118 protein; protei 64.2 4.8 0.00016 32.3 3.2 43 142-184 6-48 (108)
101 2nnn_A Probable transcriptiona 64.1 4.3 0.00015 32.8 2.9 35 156-190 51-85 (140)
102 2fbi_A Probable transcriptiona 64.1 4.2 0.00014 33.0 2.8 36 156-191 49-84 (142)
103 2k02_A Ferrous iron transport 63.8 5.4 0.00018 32.8 3.4 46 144-191 5-50 (87)
104 2ip2_A Probable phenazine-spec 63.6 4.9 0.00017 37.9 3.6 43 155-197 39-81 (334)
105 3oio_A Transcriptional regulat 62.9 6.2 0.00021 31.9 3.7 43 141-183 7-49 (113)
106 3f3x_A Transcriptional regulat 62.7 4.8 0.00016 33.1 3.0 44 145-191 41-84 (144)
107 2w25_A Probable transcriptiona 62.5 5.9 0.0002 33.6 3.6 50 139-190 5-54 (150)
108 3cdh_A Transcriptional regulat 62.1 4.6 0.00016 33.6 2.8 38 154-191 54-91 (155)
109 1mkm_A ICLR transcriptional re 61.7 8.6 0.00029 35.6 4.8 45 145-190 12-56 (249)
110 1fxk_C Protein (prefoldin); ar 61.5 11 0.00039 32.0 5.2 51 194-244 72-129 (133)
111 2wte_A CSA3; antiviral protein 61.4 6.8 0.00023 37.1 4.2 49 142-192 153-201 (244)
112 1r1t_A Transcriptional repress 61.3 5.7 0.00019 33.3 3.2 38 155-192 57-94 (122)
113 2h09_A Transcriptional regulat 60.6 10 0.00035 32.0 4.8 37 156-192 53-89 (155)
114 4aik_A Transcriptional regulat 60.5 64 0.0022 27.3 9.8 35 157-191 46-80 (151)
115 1ylf_A RRF2 family protein; st 60.4 8 0.00027 33.4 4.1 46 145-190 18-63 (149)
116 3by6_A Predicted transcription 60.1 21 0.00072 30.1 6.6 52 142-193 16-71 (126)
117 2ia0_A Putative HTH-type trans 59.9 6.8 0.00023 34.7 3.6 50 139-190 15-64 (171)
118 3mn2_A Probable ARAC family tr 59.9 6.4 0.00022 31.5 3.2 43 142-184 3-45 (108)
119 2pn6_A ST1022, 150AA long hypo 59.8 6 0.0002 33.4 3.2 44 144-189 6-49 (150)
120 2qlz_A Transcription factor PF 59.8 11 0.00039 35.6 5.3 42 145-189 16-57 (232)
121 2cyy_A Putative HTH-type trans 59.2 6.1 0.00021 33.7 3.1 50 139-190 5-54 (151)
122 1v4r_A Transcriptional repress 59.0 14 0.00048 29.5 5.1 55 139-193 13-71 (102)
123 3i53_A O-methyltransferase; CO 58.9 4.8 0.00017 38.1 2.7 50 145-197 29-78 (332)
124 4a5n_A Uncharacterized HTH-typ 58.4 7.4 0.00025 33.7 3.5 58 133-191 14-74 (131)
125 1z91_A Organic hydroperoxide r 58.2 2 7E-05 35.3 -0.1 36 156-191 53-88 (147)
126 3k69_A Putative transcription 56.3 10 0.00035 33.6 4.2 46 145-190 16-61 (162)
127 3lsg_A Two-component response 55.9 8.7 0.0003 30.4 3.3 43 142-184 3-46 (103)
128 3ihu_A Transcriptional regulat 55.1 18 0.00062 32.5 5.7 57 136-192 14-74 (222)
129 2g7u_A Transcriptional regulat 54.8 7.1 0.00024 36.4 3.0 50 145-195 15-66 (257)
130 2o0y_A Transcriptional regulat 54.7 11 0.00038 35.2 4.4 41 155-195 36-76 (260)
131 2r3s_A Uncharacterized protein 54.3 6 0.0002 37.0 2.4 42 155-197 37-78 (335)
132 3lst_A CALO1 methyltransferase 54.2 6.3 0.00022 37.8 2.6 42 154-196 52-93 (348)
133 1bl0_A Protein (multiple antib 54.2 7.6 0.00026 32.3 2.8 43 141-183 11-53 (129)
134 3neu_A LIN1836 protein; struct 53.5 26 0.00087 29.4 6.0 52 142-193 18-73 (125)
135 3df8_A Possible HXLR family tr 53.3 7.2 0.00025 32.1 2.5 57 136-192 18-78 (111)
136 2k9s_A Arabinose operon regula 53.2 12 0.00041 29.9 3.8 41 142-182 4-45 (107)
137 3hh0_A Transcriptional regulat 52.7 18 0.00061 31.6 5.1 35 157-197 4-42 (146)
138 2ia2_A Putative transcriptiona 52.6 12 0.00042 35.0 4.3 45 155-201 34-78 (265)
139 1jgs_A Multiple antibiotic res 52.4 4.5 0.00015 32.8 1.1 35 156-190 47-81 (138)
140 2vn2_A DNAD, chromosome replic 52.0 9.6 0.00033 32.3 3.1 35 158-192 52-86 (128)
141 2e1c_A Putative HTH-type trans 51.8 9.8 0.00034 33.7 3.3 50 139-190 25-74 (171)
142 3gwz_A MMCR; methyltransferase 51.8 6.3 0.00022 38.3 2.2 44 154-197 68-112 (369)
143 1q1h_A TFE, transcription fact 51.8 8.6 0.00029 30.9 2.7 37 154-190 30-66 (110)
144 3sxy_A Transcriptional regulat 51.6 15 0.0005 33.1 4.5 40 153-192 31-70 (218)
145 4fx0_A Probable transcriptiona 51.1 10 0.00035 32.2 3.2 36 155-190 50-85 (148)
146 2ek5_A Predicted transcription 50.7 21 0.00073 30.3 5.1 50 144-193 11-64 (129)
147 2zdi_C Prefoldin subunit alpha 50.6 34 0.0012 29.8 6.6 52 193-244 81-139 (151)
148 1qzz_A RDMB, aclacinomycin-10- 50.5 7.8 0.00027 37.0 2.6 49 146-197 41-91 (374)
149 3tqn_A Transcriptional regulat 50.4 18 0.00061 29.8 4.5 52 142-193 14-69 (113)
150 3r4k_A Transcriptional regulat 50.0 41 0.0014 31.4 7.4 54 145-199 7-63 (260)
151 1xmk_A Double-stranded RNA-spe 49.2 25 0.00084 28.4 5.0 56 141-198 11-67 (79)
152 3he5_B Synzip2; heterodimeric 49.2 41 0.0014 25.1 5.7 37 209-245 9-45 (52)
153 3b73_A PHIH1 repressor-like pr 48.9 14 0.00046 31.4 3.6 53 139-193 11-65 (111)
154 2esh_A Conserved hypothetical 48.1 74 0.0025 26.1 8.0 44 147-190 19-68 (118)
155 1okr_A MECI, methicillin resis 47.2 12 0.0004 30.2 2.8 46 144-191 13-62 (123)
156 2qko_A Possible transcriptiona 46.7 13 0.00045 31.8 3.2 43 134-176 25-67 (215)
157 1tw3_A COMT, carminomycin 4-O- 46.2 11 0.00039 35.8 3.0 43 155-197 50-92 (360)
158 3dp7_A SAM-dependent methyltra 46.0 14 0.00049 35.7 3.7 47 147-195 41-87 (363)
159 1hsj_A Fusion protein consisti 45.9 11 0.00038 37.3 3.0 46 146-191 409-454 (487)
160 2v79_A DNA replication protein 44.8 12 0.0004 32.6 2.6 36 155-190 49-84 (135)
161 1x19_A CRTF-related protein; m 44.8 13 0.00043 35.7 3.1 42 155-197 62-103 (359)
162 1bia_A BIRA bifunctional prote 44.7 14 0.00047 36.0 3.4 44 144-189 8-51 (321)
163 3t8r_A Staphylococcus aureus C 43.8 23 0.00079 30.5 4.3 46 144-189 14-60 (143)
164 2qvo_A Uncharacterized protein 43.3 12 0.00042 29.4 2.3 36 154-189 27-62 (95)
165 3m91_A Proteasome-associated A 43.1 54 0.0018 24.7 5.6 38 209-246 8-45 (51)
166 2wt7_A Proto-oncogene protein 43.1 49 0.0017 25.2 5.6 34 211-244 24-57 (63)
167 2yy0_A C-MYC-binding protein; 42.6 45 0.0015 25.1 5.2 32 210-241 19-50 (53)
168 2b0l_A GTP-sensing transcripti 42.4 11 0.00037 31.1 1.9 39 153-191 38-77 (102)
169 3k2z_A LEXA repressor; winged 42.3 13 0.00044 33.2 2.5 38 154-191 21-58 (196)
170 1wi9_A Protein C20ORF116 homol 42.1 22 0.00075 28.8 3.6 46 142-189 8-53 (72)
171 1r8e_A Multidrug-efflux transp 42.1 73 0.0025 29.2 7.7 41 156-200 4-47 (278)
172 1fp2_A Isoflavone O-methyltran 41.3 15 0.00051 35.2 3.0 51 146-197 41-96 (352)
173 3i4p_A Transcriptional regulat 40.7 17 0.0006 31.5 3.1 47 142-190 4-50 (162)
174 1uly_A Hypothetical protein PH 40.3 19 0.00066 32.6 3.4 44 144-190 23-66 (192)
175 1z4h_A TORI, TOR inhibition pr 40.0 12 0.0004 28.3 1.6 26 154-179 7-32 (66)
176 1p4x_A Staphylococcal accessor 39.0 18 0.00062 34.1 3.1 45 147-191 164-208 (250)
177 3c7j_A Transcriptional regulat 38.6 21 0.00071 33.0 3.4 51 142-192 31-84 (237)
178 4dzo_A Mitotic spindle assembl 38.4 92 0.0031 27.0 7.3 35 210-244 4-38 (123)
179 2zqm_A Prefoldin beta subunit 37.6 64 0.0022 26.3 5.9 76 165-244 30-111 (117)
180 3bvo_A CO-chaperone protein HS 37.4 63 0.0021 30.0 6.5 52 135-188 55-123 (207)
181 2g9w_A Conserved hypothetical 37.1 25 0.00085 29.5 3.4 46 145-191 13-62 (138)
182 3uo3_A J-type CO-chaperone JAC 36.6 2.2E+02 0.0075 25.7 9.8 109 131-246 24-147 (181)
183 2xdj_A Uncharacterized protein 36.1 59 0.002 26.6 5.3 39 208-246 25-63 (83)
184 2k4b_A Transcriptional regulat 35.3 19 0.00065 29.7 2.3 45 145-191 39-87 (99)
185 1t2k_D Cyclic-AMP-dependent tr 35.2 79 0.0027 23.8 5.6 34 211-244 23-56 (61)
186 1q06_A Transcriptional regulat 35.1 61 0.0021 27.7 5.6 81 158-245 1-100 (135)
187 2o03_A Probable zinc uptake re 34.6 33 0.0011 28.8 3.8 46 146-192 16-66 (131)
188 3lwf_A LIN1550 protein, putati 34.4 28 0.00096 30.9 3.4 46 145-190 31-77 (159)
189 1zg3_A Isoflavanone 4'-O-methy 33.9 20 0.00068 34.4 2.6 44 146-190 35-81 (358)
190 3hrs_A Metalloregulator SCAR; 33.8 31 0.0011 31.4 3.7 39 154-192 17-55 (214)
191 1mzb_A Ferric uptake regulatio 33.7 30 0.001 29.2 3.4 47 145-191 22-73 (136)
192 3viq_B Mating-type switching p 33.7 31 0.0011 28.6 3.3 32 212-243 3-34 (85)
193 2pjp_A Selenocysteine-specific 33.7 38 0.0013 28.2 3.9 55 139-195 64-118 (121)
194 1j9i_A GPNU1 DBD;, terminase s 33.5 18 0.00063 27.1 1.8 40 157-199 2-43 (68)
195 1xd7_A YWNA; structural genomi 33.3 48 0.0016 28.3 4.6 48 141-190 9-56 (145)
196 1fxk_A Prefoldin; archaeal pro 33.1 1.8E+02 0.0062 23.2 7.9 72 166-242 26-104 (107)
197 1hw1_A FADR, fatty acid metabo 33.0 23 0.00079 31.9 2.7 48 144-191 14-65 (239)
198 1jnm_A Proto-oncogene C-JUN; B 32.9 82 0.0028 23.8 5.4 34 211-244 23-56 (62)
199 1fzc_C Fibrin; blood coagulati 32.9 1.9E+02 0.0064 28.9 9.4 99 209-311 17-117 (319)
200 1ci6_A Transcription factor AT 32.9 88 0.003 23.9 5.6 32 212-243 25-56 (63)
201 1fp1_D Isoliquiritigenin 2'-O- 32.6 21 0.00073 34.4 2.5 34 157-190 62-101 (372)
202 3mcz_A O-methyltransferase; ad 32.1 26 0.0009 33.1 3.0 39 157-196 56-94 (352)
203 3gbg_A TCP pilus virulence reg 32.0 28 0.00097 31.7 3.1 38 142-179 170-207 (276)
204 2kfs_A Conserved hypothetical 31.7 18 0.0006 32.8 1.6 26 154-179 28-53 (148)
205 2hs5_A Putative transcriptiona 31.6 30 0.001 31.8 3.3 40 153-192 47-86 (239)
206 2qq9_A Diphtheria toxin repres 31.5 1.7E+02 0.0058 26.6 8.3 38 155-192 22-59 (226)
207 1fxk_A Prefoldin; archaeal pro 31.1 84 0.0029 25.2 5.5 31 214-244 69-99 (107)
208 2zqm_A Prefoldin beta subunit 30.9 89 0.003 25.4 5.7 34 212-245 72-105 (117)
209 3ic7_A Putative transcriptiona 30.6 26 0.00089 29.5 2.5 52 142-193 16-71 (126)
210 2fxa_A Protease production reg 30.4 13 0.00046 33.4 0.6 36 156-191 61-96 (207)
211 1d5y_A ROB transcription facto 29.9 27 0.00092 32.0 2.6 42 142-183 4-45 (292)
212 1umq_A Photosynthetic apparatu 29.9 72 0.0025 25.6 4.8 40 137-179 36-76 (81)
213 1m1j_C Fibrinogen gamma chain; 29.9 19 0.00064 37.2 1.7 28 382-409 310-348 (409)
214 1r8d_A Transcription activator 29.8 80 0.0027 25.7 5.2 36 158-197 3-40 (109)
215 1p4x_A Staphylococcal accessor 29.8 41 0.0014 31.7 3.9 45 146-190 39-83 (250)
216 2j5u_A MREC protein; bacterial 29.8 44 0.0015 31.9 4.1 47 209-256 25-72 (255)
217 1nkp_B MAX protein, MYC proto- 29.6 88 0.003 24.6 5.3 35 210-244 47-81 (83)
218 2obp_A Putative DNA-binding pr 29.1 47 0.0016 27.6 3.7 38 153-190 32-69 (96)
219 1hqc_A RUVB; extended AAA-ATPa 28.7 49 0.0017 30.4 4.2 54 139-192 245-300 (324)
220 4a6d_A Hydroxyindole O-methylt 28.1 35 0.0012 33.0 3.2 45 146-191 33-77 (353)
221 3gp4_A Transcriptional regulat 27.9 80 0.0027 27.3 5.1 34 210-243 88-121 (142)
222 2di3_A Bacterial regulatory pr 27.8 35 0.0012 30.9 3.0 37 153-189 23-60 (239)
223 3l7w_A Putative uncharacterize 27.6 55 0.0019 26.6 3.9 45 146-190 14-59 (108)
224 3bni_A Putative TETR-family tr 27.6 23 0.00079 30.9 1.6 43 134-176 40-82 (229)
225 2aze_A Transcription factor DP 27.5 1.2E+02 0.0041 27.7 6.3 19 271-289 66-84 (155)
226 2wv0_A YVOA, HTH-type transcri 27.3 57 0.0019 30.2 4.3 50 142-191 15-68 (243)
227 2qc0_A Uncharacterized protein 27.1 35 0.0012 33.9 3.0 37 156-192 310-346 (373)
228 3dcf_A Transcriptional regulat 26.9 39 0.0013 28.3 2.9 42 134-175 28-69 (218)
229 3edp_A LIN2111 protein; APC883 26.8 53 0.0018 30.3 4.0 51 141-191 13-67 (236)
230 2jn6_A Protein CGL2762, transp 26.8 12 0.00042 29.4 -0.2 30 157-186 23-52 (97)
231 3q8t_A Beclin-1; autophagy, AT 26.8 1E+02 0.0035 25.5 5.3 34 213-246 21-54 (96)
232 1sd4_A Penicillinase repressor 26.5 45 0.0015 26.8 3.1 45 145-191 14-62 (126)
233 3p9c_A Caffeic acid O-methyltr 26.3 41 0.0014 32.7 3.3 45 146-190 45-94 (364)
234 1jko_C HIN recombinase, DNA-in 26.3 31 0.001 23.0 1.8 22 158-179 22-43 (52)
235 3u1d_A Uncharacterized protein 26.1 55 0.0019 29.4 3.9 46 146-191 34-80 (151)
236 3cta_A Riboflavin kinase; stru 26.0 35 0.0012 31.0 2.6 38 154-191 24-61 (230)
237 1fxk_C Protein (prefoldin); ar 25.5 1.2E+02 0.004 25.5 5.7 32 214-245 92-123 (133)
238 1tc3_C Protein (TC3 transposas 25.4 34 0.0012 22.2 1.9 27 158-184 22-48 (51)
239 4etp_A Kinesin-like protein KA 25.2 67 0.0023 32.6 4.8 52 211-262 4-59 (403)
240 1lwu_C Fibrinogen gamma chain; 25.1 28 0.00097 34.8 2.0 98 207-312 2-104 (323)
241 1fx7_A Iron-dependent represso 25.1 57 0.0019 29.7 3.9 36 157-192 24-59 (230)
242 3dv8_A Transcriptional regulat 24.7 39 0.0013 28.9 2.6 39 157-196 169-207 (220)
243 3dkw_A DNR protein; CRP-FNR, H 24.0 62 0.0021 27.8 3.7 38 158-196 179-216 (227)
244 2fe3_A Peroxide operon regulat 24.0 63 0.0022 27.6 3.7 47 145-192 26-77 (145)
245 3fiw_A Putative TETR-family tr 24.0 47 0.0016 29.3 3.0 45 132-176 20-64 (211)
246 1ft9_A Carbon monoxide oxidati 23.9 69 0.0024 27.7 4.0 36 158-193 164-199 (222)
247 3e6c_C CPRK, cyclic nucleotide 23.7 64 0.0022 28.6 3.9 40 157-197 177-216 (250)
248 2id3_A Putative transcriptiona 23.6 19 0.00065 31.4 0.3 42 135-176 38-79 (225)
249 2p5k_A Arginine repressor; DNA 23.5 61 0.0021 23.1 3.1 37 148-190 12-53 (64)
250 2bgc_A PRFA; bacterial infecti 23.4 59 0.002 28.7 3.6 35 157-191 169-204 (238)
251 2dgc_A Protein (GCN4); basic d 23.2 99 0.0034 23.8 4.3 30 211-240 31-60 (63)
252 2v7f_A RPS19, RPS19E SSU ribos 23.2 55 0.0019 29.1 3.3 44 146-192 59-116 (150)
253 3hho_A CO-chaperone protein HS 22.8 1.8E+02 0.0063 25.9 6.7 96 139-246 20-142 (174)
254 4dzn_A Coiled-coil peptide CC- 22.8 1.7E+02 0.0056 20.1 4.7 26 212-237 4-29 (33)
255 1g2h_A Transcriptional regulat 22.7 1.2E+02 0.0041 22.4 4.6 38 138-179 17-55 (61)
256 1y6u_A XIS, excisionase from t 22.7 33 0.0011 26.8 1.6 26 154-179 13-38 (70)
257 3bwg_A Uncharacterized HTH-typ 22.5 78 0.0027 29.1 4.3 50 142-191 10-63 (239)
258 2yko_A LINE-1 ORF1P; RNA-bindi 22.4 87 0.003 30.2 4.6 41 206-246 9-49 (233)
259 2zhg_A Redox-sensitive transcr 21.8 1.5E+02 0.0052 25.9 5.8 81 158-245 12-111 (154)
260 2qlz_A Transcription factor PF 21.6 54 0.0019 30.9 3.0 42 155-196 176-217 (232)
261 3bru_A Regulatory protein, TET 21.5 66 0.0023 27.1 3.3 43 134-176 27-69 (222)
262 1ci6_A Transcription factor AT 21.5 1.7E+02 0.0058 22.3 5.3 32 210-241 30-61 (63)
263 1gd2_E Transcription factor PA 21.4 1.1E+02 0.0037 24.3 4.3 29 212-240 31-59 (70)
264 2w57_A Ferric uptake regulatio 21.4 53 0.0018 28.4 2.7 46 146-191 22-72 (150)
265 4ev0_A Transcription regulator 21.3 76 0.0026 27.0 3.7 38 157-195 163-200 (216)
266 2iu5_A DHAS, YCEG, HTH-type dh 21.3 77 0.0026 26.5 3.7 36 140-175 16-51 (195)
267 3eet_A Putative GNTR-family tr 21.0 92 0.0032 29.4 4.6 51 141-191 33-87 (272)
268 2rae_A Transcriptional regulat 20.9 78 0.0027 26.4 3.6 44 133-176 13-56 (207)
269 2fmy_A COOA, carbon monoxide o 20.7 65 0.0022 27.8 3.2 39 157-196 167-206 (220)
270 4b4t_K 26S protease regulatory 20.7 3.4E+02 0.012 27.7 9.0 39 207-245 46-84 (428)
271 2ozu_A Histone acetyltransfera 20.3 1E+02 0.0035 30.6 4.7 50 137-189 188-243 (284)
272 2w83_C C-JUN-amino-terminal ki 20.3 76 0.0026 26.0 3.2 30 212-241 46-75 (77)
273 1gmj_A ATPase inhibitor; coile 20.3 1.7E+02 0.0058 24.3 5.3 28 219-246 53-80 (84)
No 1
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=100.00 E-value=2.5e-36 Score=259.22 Aligned_cols=102 Identities=33% Similarity=0.543 Sum_probs=97.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhccCCCCCCCeEEEeeCCCCCeEEecCC
Q 012778 208 ADENASSLQAEVESLTIQERRLDEQIRIMQERLRDLSEDENNQKWLFVTEDDIKSLPCFQNETLIAIKAPHGTTLEVPDP 287 (456)
Q Consensus 208 ~~~~~~~Lq~El~~L~~eE~~LDelI~~~~q~Lr~Lted~~n~~~aYVT~eDI~~l~~f~~qTvIAIKAP~gT~LEVPdP 287 (456)
+..++..||+|+++|..+|+.||++|++|+++|++|++|+.|.+|+|||++||++|+||++|||||||||+||+||||+|
T Consensus 4 ~~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted~~n~~~aYVT~~Di~~i~~f~~qtviaIkAP~gT~LeVpdp 83 (106)
T 2aze_B 4 MGGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQRLAYVTCQDLRSIADPAEQMVMVIKAPPETQLQAVDS 83 (106)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCEEEHHHHHTTSCTTTEEEEEEECCTTCEEEEEEC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccceecHHHHhcCcCCCcCeEEEEECCCCCeeeeCCC
Confidence 44568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCceEEEEecCCCceEEEEecC
Q 012778 288 DEAVDYPQRRYRIVLRSTMGPIDVYLVSQ 316 (456)
Q Consensus 288 de~~~~~qr~YqI~LkS~~GPIdVyL~~~ 316 (456)
++ +|||||||++||||||||++
T Consensus 84 ~~-------~yqi~LkS~~GPIdV~L~~~ 105 (106)
T 2aze_B 84 SE-------NFQISLKSKQGPIDVFLCPE 105 (106)
T ss_dssp SS-------CEEEEEECSSSCCEEECCTT
T ss_pred Cc-------ceEEEEECCCCCEEEEEeCC
Confidence 84 69999999999999999986
No 2
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=99.95 E-value=2.9e-29 Score=204.20 Aligned_cols=73 Identities=71% Similarity=1.091 Sum_probs=65.8
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhhCCCCcccHHHHHhhhcc-eeeehhhhHHhhhhccceecccCCeEEEeecC
Q 012778 129 PTGPCRYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEV-QKRRIYDITNVLEGIGLIEKKLKNRIQWKGLD 201 (456)
Q Consensus 129 p~~~~R~d~SLglLTkKFI~Ll~~apdg~idLn~aA~~L~V-qKRRIYDItNVLEGIGLIeK~sKN~i~W~G~d 201 (456)
|.+.+|+|+||++||++||++|++++++.+||++||+.|+| +|||||||+|||||||||+|.+||.|+|+|.+
T Consensus 2 ~~~~~R~~~SL~~lt~kFi~l~~~~~~~~i~l~~aa~~L~v~~kRRiYDI~NVLe~igli~K~~k~~~~W~G~~ 75 (76)
T 1cf7_A 2 PGTPSRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSKNSIQWKGVG 75 (76)
T ss_dssp ----CTTTTCHHHHHHHHHHHHHHSSTTEEEHHHHHHHTTTCCTHHHHHHHHHHHHHTSEEEEETTEEEEC---
T ss_pred CCCCCCccCcHHHHHHHHHHHHHhCCCCcCcHHHHHHHhCCccceehhhHHHHHhHhcceeecCCCcEEEeCCC
Confidence 67899999999999999999999999999999999999999 99999999999999999999999999999975
No 3
>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=99.29 E-value=1.2e-12 Score=110.94 Aligned_cols=65 Identities=32% Similarity=0.551 Sum_probs=45.6
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcccHHHHHhhh-------------------cceeeehhhhHHhhhhccceecccCCeEE
Q 012778 136 DSSLGLLTKKFINLIKHAEDGILDLNKAADTL-------------------EVQKRRIYDITNVLEGIGLIEKKLKNRIQ 196 (456)
Q Consensus 136 d~SLglLTkKFI~Ll~~apdg~idLn~aA~~L-------------------~VqKRRIYDItNVLEGIGLIeK~sKN~i~ 196 (456)
.+.|..+..+..+.++. .+...++++|+.| ..+||||||++|||++||||+| .|+.|+
T Consensus 9 ~~GLr~fS~kVcekVk~--k~~Tty~eVAdeLV~e~~~~~~~~~~~~~~d~~~~rRRvYD~~NVl~a~gii~K-~k~~i~ 85 (95)
T 1cf7_B 9 GKGLRHFSMKVCEKVQR--KGTTSYNEVADELVSEFTNSNNHLAADSAYDQKNIRRRVYDALNVLMAMNIISK-EKKEIK 85 (95)
T ss_dssp CCHHHHHHHHHHHHHHH--HSEECHHHHHHHHHHHHHTCTTCCGGGSHHHHHHHHHHHHHHHHHHHHTTSBCC-CSSCEE
T ss_pred CccHHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHhcccccCccchhcccccchhhHHHHHHHHHHhcceec-CCCEEE
Confidence 34455555555555533 2334555555544 4599999999999999999999 799999
Q ss_pred EeecCCC
Q 012778 197 WKGLDVS 203 (456)
Q Consensus 197 W~G~d~s 203 (456)
|+|++.+
T Consensus 86 W~g~~~~ 92 (95)
T 1cf7_B 86 WIGLPTN 92 (95)
T ss_dssp BCCCC--
T ss_pred EecCCcc
Confidence 9998754
No 4
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=93.16 E-value=0.074 Score=41.65 Aligned_cols=44 Identities=23% Similarity=0.514 Sum_probs=40.2
Q ss_pred HHHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhcccee
Q 012778 144 KKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIE 188 (456)
Q Consensus 144 kKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIe 188 (456)
++.++++++ .+|++|+..+|++++|.|--+||+.+=||.=|||.
T Consensus 13 ~~lL~yIr~-sGGildI~~~a~kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 13 RELLDYIVN-NGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHHHH-TTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHH-cCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 467778876 79999999999999999999999999999999986
No 5
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=92.46 E-value=0.61 Score=40.32 Aligned_cols=37 Identities=16% Similarity=0.208 Sum_probs=33.5
Q ss_pred CCcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 155 DGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 155 dg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
++.+.+.++|+.|++.+-.+.-+++-||.-|||+|..
T Consensus 66 ~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~ 102 (166)
T 3deu_A 66 PPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQT 102 (166)
T ss_dssp CSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC-
T ss_pred CCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeC
Confidence 3458999999999999999999999999999999874
No 6
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=92.29 E-value=0.14 Score=42.21 Aligned_cols=61 Identities=15% Similarity=0.155 Sum_probs=53.6
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecccCCeEEEee
Q 012778 136 DSSLGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKG 199 (456)
Q Consensus 136 d~SLglLTkKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN~i~W~G 199 (456)
|-.-..+.++.+.+|+. +| +...++|++|+|+|.-++=.++-||.=|+|.+..-+--+|.=
T Consensus 12 d~~~~~~~~~IL~lL~~--~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~~~~PP~W~~ 72 (82)
T 1oyi_A 12 ERSNAEIVCEAIKTIGI--EG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSDDIPPRWFM 72 (82)
T ss_dssp -CCSHHHHHHHHHHHSS--ST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEECSSSSCEEES
T ss_pred ccchHHHHHHHHHHHHH--cC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCCCCccee
Confidence 44566788899999983 45 999999999999999999999999999999999999999974
No 7
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=92.06 E-value=0.13 Score=40.91 Aligned_cols=55 Identities=15% Similarity=0.283 Sum_probs=47.3
Q ss_pred HHHHHHHhhCC-CCcccHHHHHhhhcceeeehhhhHHhhhhccceecccCCeEEEe
Q 012778 144 KKFINLIKHAE-DGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWK 198 (456)
Q Consensus 144 kKFI~Ll~~ap-dg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN~i~W~ 198 (456)
++.+.+|++.+ +..+...++|+.|+|.|+.|.-.+.-||.-|+|.+.+.+.=.|.
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~~~~W~ 72 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWK 72 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSSSCEEE
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCceE
Confidence 67788786654 67899999999999999999999999999999999876656674
No 8
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=91.62 E-value=0.4 Score=39.34 Aligned_cols=46 Identities=9% Similarity=0.097 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 141 LLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 141 lLTkKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
.+....+..+. .+ +-..++|..+++..|++-.+++.|+.-|||++.
T Consensus 8 eIi~~IL~~i~---~~-~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~ 53 (95)
T 1r7j_A 8 EIIQAILEACK---SG-SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQE 53 (95)
T ss_dssp HHHHHHHHHHT---TC-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHH---cC-CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEE
Confidence 34444555554 34 899999999999999999999999999999998
No 9
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=91.38 E-value=0.19 Score=40.75 Aligned_cols=57 Identities=16% Similarity=0.272 Sum_probs=48.1
Q ss_pred HHHHHHHHhhC-CCCcccHHHHHhhhcceeeehhhhHHhhhhccceecccCCeEEEee
Q 012778 143 TKKFINLIKHA-EDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKG 199 (456)
Q Consensus 143 TkKFI~Ll~~a-pdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN~i~W~G 199 (456)
-++.+++|++. ++..+...++|+.|+|.|+-|.-.+.-||.-|+|.+.+.+.=.|.=
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~~~~~W~i 69 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWKI 69 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESSSSCEEEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCeeEE
Confidence 46677777654 4667999999999999999999999999999999998766677753
No 10
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=91.20 E-value=1.3 Score=35.54 Aligned_cols=47 Identities=21% Similarity=0.257 Sum_probs=38.4
Q ss_pred HHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecccCCe
Q 012778 145 KFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNR 194 (456)
Q Consensus 145 KFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN~ 194 (456)
+.+.++. ++.+.+.++|+.|++.+--++-.++.|+.-|+|++.....
T Consensus 25 ~IL~~L~---~~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~gr 71 (114)
T 2oqg_A 25 EILTELG---RADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKVGR 71 (114)
T ss_dssp HHHHHHH---HSCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred HHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEecCC
Confidence 3555553 3458999999999999999999999999999998764433
No 11
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=91.19 E-value=0.55 Score=39.55 Aligned_cols=46 Identities=9% Similarity=0.208 Sum_probs=38.9
Q ss_pred HHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 145 KFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 145 KFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
+.+.++...++..+...++|+.|++.|-.+|-.++.|+..|+|.|.
T Consensus 30 ~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 30 NVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 4566665554433999999999999999999999999999999986
No 12
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=91.11 E-value=0.22 Score=38.31 Aligned_cols=52 Identities=12% Similarity=0.229 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecccCCe
Q 012778 142 LTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNR 194 (456)
Q Consensus 142 LTkKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN~ 194 (456)
.-++.+++|.+ .+..+.+.++|+.|+|.|--++-+++.|+.-|+|....+..
T Consensus 11 ~~~~IL~~L~~-~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~~~~G~ 62 (67)
T 2heo_A 11 LEQKILQVLSD-DGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSSPSPKY 62 (67)
T ss_dssp HHHHHHHHHHH-HCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEEEETTE
T ss_pred HHHHHHHHHHH-cCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEecCCCce
Confidence 34578888865 34569999999999999999999999999999998754443
No 13
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=88.81 E-value=1.9 Score=35.76 Aligned_cols=46 Identities=20% Similarity=0.246 Sum_probs=33.3
Q ss_pred HHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 146 FINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 146 FI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
++.++...+++.+...++|+.|++.+=-+.-+++-||.-|||+|..
T Consensus 46 vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 91 (148)
T 3jw4_A 46 MIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRI 91 (148)
T ss_dssp HHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC-
T ss_pred HHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeC
Confidence 4445555556789999999999999999999999999999999873
No 14
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=88.70 E-value=2.8 Score=34.20 Aligned_cols=46 Identities=17% Similarity=0.162 Sum_probs=40.5
Q ss_pred HHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 145 KFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 145 KFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
..+.++...+++.+.+.++|+.|++.+=.+.-+++-||.-|+|+|.
T Consensus 35 ~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~ 80 (139)
T 3eco_A 35 HTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRY 80 (139)
T ss_dssp HHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeec
Confidence 3455566666678999999999999999999999999999999987
No 15
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=87.27 E-value=2.8 Score=34.07 Aligned_cols=47 Identities=9% Similarity=0.129 Sum_probs=40.0
Q ss_pred HHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 145 KFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 145 KFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
.++.++...+++.+...++|+.|++.+--++-+++-||.-|+|++..
T Consensus 38 ~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~ 84 (141)
T 3bro_A 38 TIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKV 84 (141)
T ss_dssp HHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeC
Confidence 34555566555579999999999999999999999999999999863
No 16
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=87.24 E-value=0.77 Score=35.63 Aligned_cols=43 Identities=14% Similarity=0.230 Sum_probs=37.3
Q ss_pred HHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceec
Q 012778 145 KFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEK 189 (456)
Q Consensus 145 KFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK 189 (456)
+.+.++... +.+...++|+.|+|.+.-++-+++.|+.-|+|++
T Consensus 4 ~Il~~L~~~--~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 4 EILEFLNRH--NGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp HHHHHHHHS--CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 456666553 5689999999999999999999999999999994
No 17
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=85.92 E-value=1.5 Score=35.95 Aligned_cols=37 Identities=24% Similarity=0.279 Sum_probs=34.6
Q ss_pred CCcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 155 DGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 155 dg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
.+.+.+.++|+.|++.+--++-+++-||.-|+|++..
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~ 84 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVR 84 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeec
Confidence 6779999999999999999999999999999999863
No 18
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=84.91 E-value=4.1 Score=33.11 Aligned_cols=45 Identities=16% Similarity=0.284 Sum_probs=37.7
Q ss_pred HHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 145 KFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 145 KFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
+.+.++.... +.+.+.++|+.|++.|=-++.+++.||.-|+|++.
T Consensus 30 ~il~~L~~~~-~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 30 AVYAILYLSD-KPLTISDIMEELKISKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp HHHHHHHHCS-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 4455553233 56999999999999999999999999999999985
No 19
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=84.82 E-value=1.6 Score=35.69 Aligned_cols=44 Identities=18% Similarity=0.227 Sum_probs=36.9
Q ss_pred HHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 146 FINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 146 FI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
++.++.. .+.+.+.++|+.|++.+--++-+++-||.-|+|++..
T Consensus 38 iL~~l~~--~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~ 81 (145)
T 2a61_A 38 ILQKIYF--EGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTP 81 (145)
T ss_dssp HHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHH--cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecC
Confidence 3444433 3468999999999999999999999999999999863
No 20
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=84.68 E-value=0.4 Score=47.58 Aligned_cols=51 Identities=14% Similarity=0.210 Sum_probs=41.9
Q ss_pred HHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecccCCeEEEee
Q 012778 146 FINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKG 199 (456)
Q Consensus 146 FI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN~i~W~G 199 (456)
++.|++ .|.....++|+.+++.|.++|++++.|+..|||++...+..+|.-
T Consensus 24 Y~~Ll~---~g~~t~~eia~~~gv~~~~Vy~~L~~L~~~GlV~~~~g~p~~y~a 74 (342)
T 3qph_A 24 YWTLLV---YGPSTAKEISTKSGIPYNRVYDTISSLKLRGFVTEIEGTPKVYAA 74 (342)
T ss_dssp SHHHHH---HHHHHHSCCSSSTTSSSCSCCHHHHHHHHHTSEEEECCTTCEEEE
T ss_pred HHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcCceeEEEE
Confidence 555664 346778899999999999999999999999999988656666664
No 21
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=84.29 E-value=2.2 Score=36.21 Aligned_cols=45 Identities=22% Similarity=0.384 Sum_probs=40.3
Q ss_pred HHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 147 INLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 147 I~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
+.++...+++.+...++|+.|++.|=.+--+++-||.-|||+|..
T Consensus 41 L~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~ 85 (147)
T 4b8x_A 41 LVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRP 85 (147)
T ss_dssp HHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEee
Confidence 445566788899999999999999999999999999999999874
No 22
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=83.82 E-value=1.7 Score=35.99 Aligned_cols=47 Identities=15% Similarity=0.256 Sum_probs=39.2
Q ss_pred HHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecccCCe
Q 012778 145 KFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNR 194 (456)
Q Consensus 145 KFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN~ 194 (456)
+.+.++. ++.+.+.++|+.|++.+--++-.+++|+..|||++.....
T Consensus 22 ~Il~~L~---~~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~gr 68 (118)
T 3f6o_A 22 AVLGRLS---RGPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQGR 68 (118)
T ss_dssp HHHHHHH---TCCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred HHHHHHH---hCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecCC
Confidence 4555564 4678999999999999999999999999999998764443
No 23
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=83.48 E-value=2.9 Score=34.11 Aligned_cols=47 Identities=15% Similarity=0.229 Sum_probs=38.6
Q ss_pred HHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecccCCe
Q 012778 145 KFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNR 194 (456)
Q Consensus 145 KFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN~ 194 (456)
+.+.++. ++.+.+.++|+.|++.+.-++-.++.|+..|||++...+.
T Consensus 29 ~IL~~L~---~~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~gr 75 (108)
T 2kko_A 29 QILDLLA---QGERAVEAIATATGMNLTTASANLQALKSGGLVEARREGT 75 (108)
T ss_dssp HHHHHHT---TCCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEETT
T ss_pred HHHHHHH---cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3444553 3678999999999999999999999999999998765443
No 24
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=82.79 E-value=0.96 Score=35.92 Aligned_cols=48 Identities=23% Similarity=0.167 Sum_probs=39.5
Q ss_pred HHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecccCCeEEE
Q 012778 145 KFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQW 197 (456)
Q Consensus 145 KFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN~i~W 197 (456)
+.+.++ ++.+.+.++|+.|+|.+--++-.++.|+..|+|++.. ..|..
T Consensus 35 ~Il~~L----~~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~-g~y~l 82 (96)
T 1y0u_A 35 KILRML----DKGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG-ERWVV 82 (96)
T ss_dssp HHHHHH----HTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEEE
T ss_pred HHHHHH----cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC-CEEEE
Confidence 344555 3568999999999999999999999999999999876 54443
No 25
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=82.18 E-value=1.5 Score=36.66 Aligned_cols=47 Identities=15% Similarity=0.237 Sum_probs=39.0
Q ss_pred HHHHHHHhhC-CCCcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 144 KKFINLIKHA-EDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 144 kKFI~Ll~~a-pdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
-+.+.++... .++.+.+.++|+.++|.++-++.|++.|+..|+|+..
T Consensus 12 l~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~ 59 (129)
T 2y75_A 12 LTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSI 59 (129)
T ss_dssp HHHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEec
Confidence 3444455443 4678999999999999999999999999999999875
No 26
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=81.86 E-value=1.2 Score=34.67 Aligned_cols=46 Identities=7% Similarity=0.062 Sum_probs=38.2
Q ss_pred HHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecccCC
Q 012778 146 FINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKN 193 (456)
Q Consensus 146 FI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN 193 (456)
.+.++. .++.+.+.++|+.|++.+--++-.++.|+..|+|++....
T Consensus 29 il~~l~--~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~ 74 (99)
T 3cuo_A 29 ILCMLS--GSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDA 74 (99)
T ss_dssp HHHHHT--TCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred HHHHHH--hCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecC
Confidence 444443 3557999999999999999999999999999999986543
No 27
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=81.84 E-value=1.3 Score=37.03 Aligned_cols=38 Identities=13% Similarity=0.176 Sum_probs=34.6
Q ss_pred CCcccHHHHHhhhcceeeehhhhHHhhhhccceecccC
Q 012778 155 DGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLK 192 (456)
Q Consensus 155 dg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sK 192 (456)
++.+.+.++|+.|+|.+--+.-+++.||.-|+|++...
T Consensus 20 ~~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~~~ 57 (142)
T 1on2_A 20 KGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKY 57 (142)
T ss_dssp HSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETT
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeeC
Confidence 34599999999999999999999999999999998743
No 28
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=81.40 E-value=3.8 Score=33.13 Aligned_cols=43 Identities=23% Similarity=0.268 Sum_probs=36.7
Q ss_pred HHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 146 FINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 146 FI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
.+.++.. .+.+...++|+.|++.+--++-+++-||.-|+|++.
T Consensus 34 iL~~l~~--~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~ 76 (138)
T 3bpv_A 34 CLLRIHR--EPGIKQDELATFFHVDKGTIARTLRRLEESGFIERE 76 (138)
T ss_dssp HHHHHHH--STTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 3444444 366899999999999999999999999999999985
No 29
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=81.20 E-value=2.4 Score=34.79 Aligned_cols=44 Identities=18% Similarity=0.238 Sum_probs=37.2
Q ss_pred HHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 146 FINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 146 FI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
.+.++... .+.+.+.++|+.|++.+--++-+++-||.-|+|++.
T Consensus 40 iL~~l~~~-~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~ 83 (147)
T 2hr3_A 40 VLGAIDRL-GGDVTPSELAAAERMRSSNLAALLRELERGGLIVRH 83 (147)
T ss_dssp HHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHc-CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeC
Confidence 34444431 566999999999999999999999999999999987
No 30
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=81.19 E-value=2.4 Score=35.12 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=34.0
Q ss_pred CCcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 155 DGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 155 dg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
.+.+.+.++|+.|++.+--++-+++-||.-|+|++..
T Consensus 49 ~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~ 85 (155)
T 1s3j_A 49 HGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTH 85 (155)
T ss_dssp HSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecC
Confidence 3468999999999999999999999999999999863
No 31
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=80.84 E-value=2.2 Score=36.38 Aligned_cols=46 Identities=17% Similarity=0.225 Sum_probs=35.6
Q ss_pred HHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 146 FINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 146 FI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
.+.++....++.+.+.++|+.|++.+=-+.-+++-||.-|||+|..
T Consensus 51 vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 96 (168)
T 3u2r_A 51 TLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTR 96 (168)
T ss_dssp HHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecC
Confidence 3444444445679999999999999999999999999999999874
No 32
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=80.49 E-value=11 Score=30.65 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=35.0
Q ss_pred CCCcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 154 EDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 154 pdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
.++.+...++|+.|++.+--++.+++-||.-|+|++..
T Consensus 49 ~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~ 86 (146)
T 2fbh_A 49 HRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLA 86 (146)
T ss_dssp CSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred cCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecC
Confidence 45678999999999999999999999999999999863
No 33
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=80.38 E-value=9.1 Score=32.08 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=33.7
Q ss_pred CcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 156 GILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 156 g~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
+.+...++|+.|++.+=-+.-+++-||.-|||+|..
T Consensus 63 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 98 (159)
T 3s2w_A 63 DGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQR 98 (159)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 568999999999999999999999999999999873
No 34
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=80.19 E-value=2.9 Score=34.47 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=36.0
Q ss_pred HHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 146 FINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 146 FI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
++.++.. .+.+.+.++|+.|++.+=-++-+++-||.-|+|+|.
T Consensus 45 iL~~l~~--~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~ 87 (148)
T 3nrv_A 45 IISVLSS--ASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
T ss_dssp HHHHHHH--SSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHc--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 4444444 347999999999999999999999999999999987
No 35
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=80.14 E-value=0.65 Score=38.21 Aligned_cols=37 Identities=14% Similarity=0.329 Sum_probs=34.1
Q ss_pred CCcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 155 DGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 155 dg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
.+.+...++|+.|++.+--++-+++-||.-|+|++..
T Consensus 49 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~ 85 (142)
T 2bv6_A 49 ESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRER 85 (142)
T ss_dssp SSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEE
T ss_pred cCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeec
Confidence 3468999999999999999999999999999999864
No 36
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=80.00 E-value=1 Score=35.11 Aligned_cols=38 Identities=16% Similarity=0.261 Sum_probs=34.8
Q ss_pred CCcccHHHHHhhhcceeeehhhhHHhhhhccceecccC
Q 012778 155 DGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLK 192 (456)
Q Consensus 155 dg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sK 192 (456)
++.+.+.++|+.|++.+--+|-+++.|+.-|+|++...
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~ 71 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKT 71 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeecc
Confidence 45689999999999999999999999999999998743
No 37
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=79.94 E-value=1.2 Score=34.61 Aligned_cols=45 Identities=20% Similarity=0.380 Sum_probs=37.8
Q ss_pred HHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 145 KFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 145 KFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
+.+.++.. .+.+...++|+.|++.+--+|-+++.|+.-|+|++..
T Consensus 24 ~il~~l~~--~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 24 RIYSLLLE--RGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 44555543 3458999999999999999999999999999999864
No 38
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=79.63 E-value=1.9 Score=35.66 Aligned_cols=38 Identities=24% Similarity=0.379 Sum_probs=35.6
Q ss_pred CCCcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 154 EDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 154 pdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
.++.+.+.++|+.|+|.+--++-+++.||.-|||++..
T Consensus 28 ~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~~ 65 (139)
T 2x4h_A 28 SGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKKE 65 (139)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred cCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEecC
Confidence 56779999999999999999999999999999999875
No 39
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=78.56 E-value=7.7 Score=31.78 Aligned_cols=36 Identities=17% Similarity=0.128 Sum_probs=33.9
Q ss_pred CcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 156 GILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 156 g~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
+.+.+.++|+.|++.+--+.-+++-||.-|+|+|..
T Consensus 50 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 85 (143)
T 3oop_A 50 EPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREI 85 (143)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccC
Confidence 678999999999999999999999999999999863
No 40
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=78.07 E-value=4.6 Score=31.15 Aligned_cols=44 Identities=14% Similarity=0.184 Sum_probs=36.6
Q ss_pred HHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 146 FINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 146 FI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
.+.++.. ++.+.+.++|+.|++.+--+|-+++.||.-|+|++..
T Consensus 21 iL~~L~~--~~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~ 64 (100)
T 1ub9_A 21 IMIFLLP--RRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYK 64 (100)
T ss_dssp HHHHHHH--HSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHh--cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 4444432 3568999999999999999999999999999999753
No 41
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=77.72 E-value=2.5 Score=35.78 Aligned_cols=37 Identities=24% Similarity=0.139 Sum_probs=34.1
Q ss_pred CCcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 155 DGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 155 dg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
.+.+.+.++|+.|++.+=-+.-+++-||.-|||+|..
T Consensus 58 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 94 (162)
T 3k0l_A 58 KPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAP 94 (162)
T ss_dssp CTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEE
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecC
Confidence 3568999999999999999999999999999999873
No 42
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=77.66 E-value=9.3 Score=31.86 Aligned_cols=37 Identities=14% Similarity=0.086 Sum_probs=33.1
Q ss_pred CCcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 155 DGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 155 dg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
.+.+...++|+.|++.+--++-+++.||.-|||+|..
T Consensus 61 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~ 97 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRET 97 (162)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeec
Confidence 4578999999999999999999999999999999863
No 43
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=77.25 E-value=9 Score=31.19 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=36.3
Q ss_pred HHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 146 FINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 146 FI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
++.++... +.+.+.++|+.|++.+--++-+++-||.-|+|++.
T Consensus 34 iL~~l~~~--~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~ 76 (144)
T 1lj9_A 34 YLVRVCEN--PGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQ 76 (144)
T ss_dssp HHHHHHHS--TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHC--cCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 34444443 46899999999999999999999999999999986
No 44
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=77.16 E-value=1.4 Score=33.87 Aligned_cols=47 Identities=13% Similarity=0.381 Sum_probs=39.7
Q ss_pred HHHHHHhhCCCCcccHHHHHhhh-----cceeeehhhhHHhhhhccceeccc
Q 012778 145 KFINLIKHAEDGILDLNKAADTL-----EVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 145 KFI~Ll~~apdg~idLn~aA~~L-----~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
..++++....++.+.+.++++.| +|.+=-+|=+++.|+..|+|.+..
T Consensus 21 ~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 21 KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEe
Confidence 35666655443689999999999 999999999999999999999863
No 45
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=77.03 E-value=2.3 Score=41.86 Aligned_cols=56 Identities=11% Similarity=0.197 Sum_probs=48.0
Q ss_pred HHHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccc-eecccCCeEEEee
Q 012778 144 KKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGL-IEKKLKNRIQWKG 199 (456)
Q Consensus 144 kKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGL-IeK~sKN~i~W~G 199 (456)
++.+++|+++.+..+.-.++|+.|+|+|+-|+--++.|+..|+ |+...+.-|+...
T Consensus 6 ~~iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~~~G~~i~~~~~~GY~L~~ 62 (323)
T 3rkx_A 6 QDVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQLKLEGCKIDSVNHKGHLLQQ 62 (323)
T ss_dssp HHHHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEEETTTEEEEEE
T ss_pred HHHHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHHHHHHhcCCeEEEeCCCeEEEec
Confidence 5788888877778999999999999999999999999999998 6655555677775
No 46
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=76.78 E-value=2.4 Score=35.00 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=33.6
Q ss_pred CcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 156 GILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 156 g~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
+.+...++|+.|++.+--+.-+++-||.-|+|++..
T Consensus 53 ~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~ 88 (152)
T 3bj6_A 53 PGATAPQLGAALQMKRQYISRILQEVQRAGLIERRT 88 (152)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecC
Confidence 468999999999999999999999999999999863
No 47
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=76.64 E-value=5.1 Score=31.50 Aligned_cols=38 Identities=13% Similarity=0.194 Sum_probs=34.9
Q ss_pred CcccHHHHHhhhcceeeehhhhHHhhhhccceecccCC
Q 012778 156 GILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKN 193 (456)
Q Consensus 156 g~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN 193 (456)
+.+.+.++|+.|++.+.-++--++.|+..|||++....
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g 72 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEA 72 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 78999999999999999999999999999999876433
No 48
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=76.55 E-value=1.6 Score=36.16 Aligned_cols=45 Identities=13% Similarity=0.255 Sum_probs=39.2
Q ss_pred HHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 146 FINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 146 FI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
++.++....++.+.+.++|+.|++.+=-+.-+++-||.-|+|+|.
T Consensus 42 vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 86 (127)
T 2frh_A 42 VLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKK 86 (127)
T ss_dssp HHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCB
T ss_pred HHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 445555555678999999999999999999999999999999985
No 49
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=76.30 E-value=4.5 Score=33.12 Aligned_cols=44 Identities=20% Similarity=0.310 Sum_probs=36.1
Q ss_pred HHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 145 KFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 145 KFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
..+.++. ..+ +...++|+.|++.|=-+.-+++.||.-|+|+|..
T Consensus 42 ~iL~~l~--~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 42 HILMLLS--EES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp HHHHHHT--TCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHH--hCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEecc
Confidence 3444444 344 9999999999999999999999999999999864
No 50
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=76.12 E-value=3.1 Score=36.51 Aligned_cols=51 Identities=20% Similarity=0.381 Sum_probs=40.8
Q ss_pred HHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecccCCeEEEe
Q 012778 145 KFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWK 198 (456)
Q Consensus 145 KFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN~i~W~ 198 (456)
+.+.+|. .+.+.+.++|+.|++.+=-++-.+++|+..|||++....+.++.
T Consensus 62 ~IL~~L~---~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~Gr~~~y 112 (151)
T 3f6v_A 62 RLVQLLT---SGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDGRFRYY 112 (151)
T ss_dssp HHHHHGG---GCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred HHHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEE
Confidence 3455554 46699999999999999999999999999999997654444443
No 51
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=75.95 E-value=1.8 Score=35.24 Aligned_cols=61 Identities=16% Similarity=0.193 Sum_probs=50.2
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecccCCeEEEe
Q 012778 136 DSSLGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWK 198 (456)
Q Consensus 136 d~SLglLTkKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN~i~W~ 198 (456)
|.....+.+++|..|. +++.+-.+.+|.+||+.|+-|==++.-|+.=|.|.+...+--+|.
T Consensus 10 ~~~~~~~v~~~i~~L~--~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~~~~PP~W~ 70 (75)
T 1sfu_A 10 DAEIFSLVKKEVLSLN--TNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMVPSNPPKWF 70 (75)
T ss_dssp SHHHHHHHHHHHHTSC--TTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCSSCEEE
T ss_pred hHHHHHHHHHHHHhCC--CCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecCCCCCCCcc
Confidence 3345556666666442 455599999999999999999999999999999999999999996
No 52
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=75.22 E-value=12 Score=31.15 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=32.8
Q ss_pred CcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 156 GILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 156 g~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
+.+...++|+.|++.+--+.-+++-||.-|||+|..
T Consensus 54 ~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 89 (149)
T 4hbl_A 54 NPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRER 89 (149)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC--
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCC
Confidence 668999999999999999999999999999999873
No 53
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=75.18 E-value=1.9 Score=34.82 Aligned_cols=46 Identities=11% Similarity=0.286 Sum_probs=37.9
Q ss_pred HHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecccCC
Q 012778 145 KFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKN 193 (456)
Q Consensus 145 KFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN 193 (456)
+.+.++. ++.+.+.++|+.|++.+--++-.++.|+..|+|.+...+
T Consensus 30 ~IL~~L~---~~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~g 75 (106)
T 1r1u_A 30 RIMELLS---VSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQG 75 (106)
T ss_dssp HHHHHHH---HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3445554 355899999999999999999999999999999976433
No 54
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=75.12 E-value=7.2 Score=30.60 Aligned_cols=38 Identities=11% Similarity=0.226 Sum_probs=33.9
Q ss_pred CCcccHHHH----HhhhcceeeehhhhHHhhhhccceecccC
Q 012778 155 DGILDLNKA----ADTLEVQKRRIYDITNVLEGIGLIEKKLK 192 (456)
Q Consensus 155 dg~idLn~a----A~~L~VqKRRIYDItNVLEGIGLIeK~sK 192 (456)
.+.+...++ |+.|++.+--++-+++-||.-|+|+|...
T Consensus 20 ~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~ 61 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQE 61 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 466888888 99999999999999999999999998643
No 55
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=74.78 E-value=3.8 Score=34.01 Aligned_cols=42 Identities=19% Similarity=0.221 Sum_probs=36.1
Q ss_pred HHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceec
Q 012778 146 FINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEK 189 (456)
Q Consensus 146 FI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK 189 (456)
.+.++... +.+...++|+.|++.+--+.-+++-||.-|+|+|
T Consensus 46 iL~~l~~~--~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 46 MINVIYST--PGISVADLTKRLIITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHHS--TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 34444443 4599999999999999999999999999999999
No 56
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=74.35 E-value=4.1 Score=33.55 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=32.5
Q ss_pred cccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 157 ILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 157 ~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
.+.+.++|+.|++.+-.++-+++-||.-|+|+|.
T Consensus 45 ~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 78 (145)
T 3g3z_A 45 SRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQ 78 (145)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeec
Confidence 3999999999999999999999999999999986
No 57
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=74.29 E-value=3.5 Score=34.52 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=33.0
Q ss_pred CcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 156 GILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 156 g~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
+.+.+.++|+.|++.+--++-+++.||.-|+|++.
T Consensus 57 ~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~ 91 (154)
T 2eth_A 57 GPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVRE 91 (154)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 35899999999999999999999999999999986
No 58
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=74.13 E-value=2.5 Score=33.31 Aligned_cols=53 Identities=17% Similarity=0.305 Sum_probs=40.7
Q ss_pred CCcHHHHHHHHHHHHhhCCCC-cccHHHHHhhhcceeee-hhhhHHhhhhcccee
Q 012778 136 DSSLGLLTKKFINLIKHAEDG-ILDLNKAADTLEVQKRR-IYDITNVLEGIGLIE 188 (456)
Q Consensus 136 d~SLglLTkKFI~Ll~~apdg-~idLn~aA~~L~VqKRR-IYDItNVLEGIGLIe 188 (456)
...+|.+.+-|.-|+--...+ .+.+.++|+.|++.+=- ++-+++.||.-|+|+
T Consensus 8 ~~~~g~~~~~l~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 8 RLQFGHLIRILPTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp GSBHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEE
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHCCCee
Confidence 345576665554433222233 69999999999999999 999999999999999
No 59
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=73.64 E-value=9.3 Score=31.94 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=33.6
Q ss_pred CCcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 155 DGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 155 dg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
.+.+.+.++|+.|++.+--++-+++-||.-|+|++.
T Consensus 64 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~ 99 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRRE 99 (162)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEec
Confidence 356899999999999999999999999999999986
No 60
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=73.59 E-value=2.6 Score=34.28 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=34.8
Q ss_pred CCcccHHHHHhhh-cceeeehhhhHHhhhhccceeccc
Q 012778 155 DGILDLNKAADTL-EVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 155 dg~idLn~aA~~L-~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
++.+.+.++++.| ++.+..++..++.||.-|||+|..
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~ 62 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIV 62 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEee
Confidence 5779999999999 999999999999999999999874
No 61
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=73.52 E-value=1.8 Score=35.14 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=33.6
Q ss_pred CcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 156 GILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 156 g~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
+.+...++|+.|++.+--++-+++-||.-|+|++..
T Consensus 44 ~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~ 79 (142)
T 3bdd_A 44 APLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKR 79 (142)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecC
Confidence 459999999999999999999999999999999874
No 62
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=73.43 E-value=3.3 Score=33.95 Aligned_cols=47 Identities=19% Similarity=0.114 Sum_probs=40.7
Q ss_pred HHHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 144 KKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 144 kKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
..++.++.++.+.-++..++|+++++.+.-+-=|+.-||.-|||.+.
T Consensus 23 ~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 23 KLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAV 69 (91)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 45667777766667999999999999999999999999999999943
No 63
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=73.13 E-value=3 Score=37.26 Aligned_cols=53 Identities=15% Similarity=0.226 Sum_probs=40.9
Q ss_pred HHHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccc-eecccCCeEEEe
Q 012778 144 KKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGL-IEKKLKNRIQWK 198 (456)
Q Consensus 144 kKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGL-IeK~sKN~i~W~ 198 (456)
.+.+.+|++. ++.+...++|+.|+|++|-||-=++.|+..|+ |.+. ..-|.+.
T Consensus 24 ~~Il~~L~~~-~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~~~-~~Gy~l~ 77 (187)
T 1j5y_A 24 KSIVRILERS-KEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVAT-PRGYVLA 77 (187)
T ss_dssp HHHHHHHHHC-SSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEEE-TTEEECC
T ss_pred HHHHHHHHHc-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE-CCEEEEC
Confidence 3456666643 34599999999999999999999999999999 8764 3334443
No 64
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=72.89 E-value=17 Score=29.69 Aligned_cols=44 Identities=23% Similarity=0.269 Sum_probs=32.9
Q ss_pred HHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 146 FINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 146 FI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
.+.++... +.+.+.++|+.|++.+=-+.-+++-||.-|||+|..
T Consensus 42 vL~~l~~~--~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~ 85 (142)
T 3ech_A 42 VLKLIDEQ--RGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRER 85 (142)
T ss_dssp HHHHHHHT--TTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHhC--CCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeecc
Confidence 44444443 468999999999999999999999999999999863
No 65
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=72.88 E-value=1.5 Score=36.30 Aligned_cols=38 Identities=13% Similarity=0.213 Sum_probs=35.3
Q ss_pred CCCcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 154 EDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 154 pdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
..+.+...++|+.|++.+--+.-+++-||.-|+|+|..
T Consensus 47 ~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~ 84 (140)
T 3hsr_A 47 NDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTR 84 (140)
T ss_dssp TTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecC
Confidence 46789999999999999999999999999999999873
No 66
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=72.72 E-value=11 Score=30.35 Aligned_cols=44 Identities=9% Similarity=0.254 Sum_probs=37.2
Q ss_pred HHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 145 KFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 145 KFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
.++.++.. .+.+.+.++|+.|++.+--++-+++-||.-|+|++.
T Consensus 37 ~iL~~l~~--~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~ 80 (139)
T 3bja_A 37 GVIQVLAK--SGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTE 80 (139)
T ss_dssp HHHHHHHH--SCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHH--cCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeec
Confidence 34444444 346999999999999999999999999999999986
No 67
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=71.56 E-value=3.2 Score=33.77 Aligned_cols=36 Identities=19% Similarity=0.365 Sum_probs=33.3
Q ss_pred CcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 156 GILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 156 g~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
+.+.+.++|+.|++.+--++-.++.||..|+|.+..
T Consensus 44 ~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~~~ 79 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGDR 79 (119)
T ss_dssp CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 468999999999999999999999999999998764
No 68
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=71.42 E-value=3.1 Score=35.32 Aligned_cols=47 Identities=17% Similarity=0.352 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 142 LTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 142 LTkKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
+-++++.+++. ++.+...++|+.|++++..+...++-|+.-|+|.+.
T Consensus 6 ~d~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 6 IDLNIIEELKK--DSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHHH--CSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 44577888765 467999999999999999999999999999999874
No 69
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=71.31 E-value=4.7 Score=38.31 Aligned_cols=49 Identities=12% Similarity=0.255 Sum_probs=38.9
Q ss_pred HHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecccCCeE
Q 012778 146 FINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRI 195 (456)
Q Consensus 146 FI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN~i 195 (456)
.++++...+ +.+.|.++|+.|++.|=-+|-|++.|+..|++++.....|
T Consensus 35 IL~~l~~~~-~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~~~~~~~Y 83 (275)
T 3mq0_A 35 ILDLVAGSP-RDLTAAELTRFLDLPKSSAHGLLAVMTELDLLARSADGTL 83 (275)
T ss_dssp HHHHHHHCS-SCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEEECTTSEE
T ss_pred HHHHHhhCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCCCcE
Confidence 455565543 5699999999999999999999999999999999864444
No 70
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=71.11 E-value=1.6 Score=37.79 Aligned_cols=60 Identities=13% Similarity=0.230 Sum_probs=45.4
Q ss_pred CCCCCCcHHHHHHHHH-HHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 132 PCRYDSSLGLLTKKFI-NLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 132 ~~R~d~SLglLTkKFI-~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
.|-....|..+..++- .+|....+|.+.+.++++.|++.+.-+...++.||.-|||+|..
T Consensus 11 ~c~~~~~l~~l~~~w~l~IL~~L~~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~ 71 (146)
T 2f2e_A 11 SCPVARPLDVIGDGWSMLIVRDAFEGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVP 71 (146)
T ss_dssp SCTTTTTHHHHCSSSHHHHHHHHHTTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCcHHHHHHHhCCchHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 4555667777764431 12221125779999999999999999999999999999999975
No 71
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=70.99 E-value=23 Score=32.52 Aligned_cols=44 Identities=20% Similarity=0.379 Sum_probs=37.3
Q ss_pred HHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 145 KFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 145 KFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
+.+.++. ++.+...++|+.|++.+--+|-.++.|+.-|||++..
T Consensus 19 ~IL~~L~---~~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~ 62 (202)
T 2p4w_A 19 RILFLLT---KRPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRV 62 (202)
T ss_dssp HHHHHHH---HSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEe
Confidence 3455554 3568999999999999999999999999999999853
No 72
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=70.79 E-value=6.1 Score=27.92 Aligned_cols=30 Identities=20% Similarity=0.380 Sum_probs=25.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012778 207 EADENASSLQAEVESLTIQERRLDEQIRIM 236 (456)
Q Consensus 207 ~~~~~~~~Lq~El~~L~~eE~~LDelI~~~ 236 (456)
.+-.+....++++++|+.+...|+++|+++
T Consensus 4 ~mRrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 4 GMRRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHhhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 345567889999999999999999999865
No 73
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=70.47 E-value=5 Score=32.97 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=33.0
Q ss_pred CcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 156 GILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 156 g~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
+.+...++|+.|++.+--++-+++.||.-|+|++.
T Consensus 55 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~ 89 (150)
T 2rdp_A 55 GDLTVGELSNKMYLACSTTTDLVDRMERNGLVARV 89 (150)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeec
Confidence 46899999999999999999999999999999986
No 74
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=69.59 E-value=5.9 Score=34.26 Aligned_cols=36 Identities=17% Similarity=0.073 Sum_probs=33.5
Q ss_pred CcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 156 GILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 156 g~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
+.+.+.++|+.|++.+--++-+++-||.-|||+|..
T Consensus 85 ~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~ 120 (181)
T 2fbk_A 85 EGLRPTELSALAAISGPSTSNRIVRLLEKGLIERRE 120 (181)
T ss_dssp SCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecC
Confidence 358999999999999999999999999999999873
No 75
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=69.47 E-value=11 Score=34.88 Aligned_cols=47 Identities=19% Similarity=0.152 Sum_probs=39.1
Q ss_pred HHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecccC
Q 012778 145 KFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLK 192 (456)
Q Consensus 145 KFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sK 192 (456)
+.++++... ++.+.+.++|+.+++.|=-+|-+++.|+..|+|++...
T Consensus 10 ~iL~~l~~~-~~~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~~~~~ 56 (241)
T 2xrn_A 10 SIMRALGSH-PHGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEALGP 56 (241)
T ss_dssp HHHHHHHTC-TTCEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEEECGG
T ss_pred HHHHHHHhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 345555443 34689999999999999999999999999999999754
No 76
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=69.37 E-value=3.4 Score=33.06 Aligned_cols=47 Identities=17% Similarity=0.299 Sum_probs=39.4
Q ss_pred HHHHHHHhhC----CCCcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 144 KKFINLIKHA----EDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 144 kKFI~Ll~~a----pdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
++.+++++.. .++.+.+.++|+.|+|+.--+..-++.||.-|+|.+.
T Consensus 7 ~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 7 TKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp HHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEec
Confidence 3455555543 4788999999999999988899999999999999986
No 77
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=69.27 E-value=3.4 Score=34.42 Aligned_cols=46 Identities=17% Similarity=0.117 Sum_probs=37.2
Q ss_pred HHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecccC
Q 012778 145 KFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLK 192 (456)
Q Consensus 145 KFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sK 192 (456)
+.+.++.. ++.+.+.++|+.|++.+--++-.++.|+..|||++...
T Consensus 46 ~IL~~L~~--~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~~ 91 (122)
T 1u2w_A 46 KITYALCQ--DEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKE 91 (122)
T ss_dssp HHHHHHHH--SSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC--
T ss_pred HHHHHHHH--CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEE
Confidence 34455543 46689999999999999999999999999999987643
No 78
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=69.19 E-value=3.6 Score=38.70 Aligned_cols=55 Identities=22% Similarity=0.363 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHH-hhhhccceecccCC
Q 012778 139 LGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITN-VLEGIGLIEKKLKN 193 (456)
Q Consensus 139 LglLTkKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItN-VLEGIGLIeK~sKN 193 (456)
|..+-++++..+-...++.+.+.++|+.|++.++.+|+.+. .|...|||.+..+.
T Consensus 261 l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~gli~~~~~g 316 (338)
T 3pfi_A 261 FDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKG 316 (338)
T ss_dssp CCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTHHHHHHTTSEEEETTE
T ss_pred CCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHcCceecCCCc
Confidence 44455778886655566789999999999999999999999 99999999887554
No 79
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=68.74 E-value=7.4 Score=34.06 Aligned_cols=39 Identities=10% Similarity=0.116 Sum_probs=27.9
Q ss_pred cccHHHHHhhhcceeeehhhhHHhhhhcccee--cccCCeEEEee
Q 012778 157 ILDLNKAADTLEVQKRRIYDITNVLEGIGLIE--KKLKNRIQWKG 199 (456)
Q Consensus 157 ~idLn~aA~~L~VqKRRIYDItNVLEGIGLIe--K~sKN~i~W~G 199 (456)
.+.+.++|+.+||..+-|- -.|.+|||. +...|.++.-.
T Consensus 16 ~~~I~evA~~~gvs~~tLR----~Ye~~Gll~p~~r~~~g~R~Y~ 56 (148)
T 3gpv_A 16 YYTIGQVAKMQHLTISQIR----YYDKQGLFPFLQRNEKGDRIFN 56 (148)
T ss_dssp CBCHHHHHHHTTCCHHHHH----HHHHTTCCTTCEECTTCCEEBC
T ss_pred ceeHHHHHHHHCcCHHHHH----HHHHCCCCCCCcCCCCCCeecC
Confidence 5889999999999988442 226778884 45566666643
No 80
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=68.65 E-value=4.2 Score=34.80 Aligned_cols=35 Identities=29% Similarity=0.352 Sum_probs=33.0
Q ss_pred CcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 156 GILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 156 g~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
+.+.+.++|+.|++.+--++-+++-||.-|+|+|.
T Consensus 58 ~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 92 (168)
T 2nyx_A 58 GPINLATLATLLGVQPSATGRMVDRLVGAELIDRL 92 (168)
T ss_dssp CSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec
Confidence 45899999999999999999999999999999985
No 81
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=68.62 E-value=2.8 Score=33.37 Aligned_cols=45 Identities=11% Similarity=0.288 Sum_probs=37.5
Q ss_pred HHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecccCC
Q 012778 146 FINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKN 193 (456)
Q Consensus 146 FI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN 193 (456)
.+.++. +|.+.+.++|+.|++.+-.++-.++.|+..|||++....
T Consensus 28 Il~~L~---~~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g 72 (102)
T 3pqk_A 28 LVCTLV---EGEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNI 72 (102)
T ss_dssp HHHHHH---TCCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSS
T ss_pred HHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 445553 256999999999999999999999999999999876443
No 82
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=67.93 E-value=4.4 Score=33.67 Aligned_cols=37 Identities=11% Similarity=0.229 Sum_probs=34.0
Q ss_pred CCcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 155 DGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 155 dg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
.+.+...++|+.|++.+--+.-+++-||.-|+|++..
T Consensus 59 ~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~ 95 (153)
T 2pex_A 59 TDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTR 95 (153)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecC
Confidence 3568999999999999999999999999999999864
No 83
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=67.62 E-value=29 Score=29.18 Aligned_cols=54 Identities=15% Similarity=0.171 Sum_probs=41.9
Q ss_pred HHHHHHHHHhh---CCCCcc-cHHHHHhhhcceeeehhhhHHhhhhccceeccc-CCeE
Q 012778 142 LTKKFINLIKH---AEDGIL-DLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL-KNRI 195 (456)
Q Consensus 142 LTkKFI~Ll~~---apdg~i-dLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s-KN~i 195 (456)
+...+.+.+.. .++..+ ...++|+.|+|+|=-+-..+..|+.-|||+... +..|
T Consensus 19 I~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~~g~G~~ 77 (134)
T 4ham_A 19 IVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITVKGKGTF 77 (134)
T ss_dssp HHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEE
T ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEcCcEEE
Confidence 44455554433 477778 899999999999999999999999999998654 4433
No 84
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=67.16 E-value=3.7 Score=36.22 Aligned_cols=46 Identities=24% Similarity=0.224 Sum_probs=40.4
Q ss_pred HHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 146 FINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 146 FI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
.+.++...+++.+.+.++|+.|++.+=.+.-+++-||.-|||+|..
T Consensus 46 vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~ 91 (189)
T 3nqo_A 46 TILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIP 91 (189)
T ss_dssp HHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 4455566678899999999999999999999999999999999863
No 85
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=67.10 E-value=3.9 Score=34.73 Aligned_cols=50 Identities=22% Similarity=0.402 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 139 LGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 139 LglLTkKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
|..+-++.+.+++. ++.+...++|+.||+++..+...++-|+.-|+|.+.
T Consensus 7 ld~~d~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 7 LDRVDMQLVKILSE--NSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 44455678888865 477999999999999999999999999999999864
No 86
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=66.96 E-value=2.4 Score=36.20 Aligned_cols=60 Identities=15% Similarity=0.214 Sum_probs=46.0
Q ss_pred CCCCCCcHHHHHHHHH-HHHhhCCCCcccHHHHHhhh-cceeeehhhhHHhhhhccceeccc
Q 012778 132 PCRYDSSLGLLTKKFI-NLIKHAEDGILDLNKAADTL-EVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 132 ~~R~d~SLglLTkKFI-~Ll~~apdg~idLn~aA~~L-~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
.|.....|.+|..++- .+|..-..+.+...++++.| ++.+.-+...++.||.-|||+|..
T Consensus 22 ~c~~~~~l~~l~~~w~l~IL~~L~~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~ 83 (131)
T 1yyv_A 22 QCPSREVLKHVTSRWGVLILVALRDGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVS 83 (131)
T ss_dssp TCTHHHHHHHHHSHHHHHHHHHGGGCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCHHHHHHHHcCCcHHHHHHHHHcCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEe
Confidence 4555666777775542 22222125789999999999 799999999999999999999874
No 87
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=66.81 E-value=11 Score=31.27 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=33.9
Q ss_pred CCCcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 154 EDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 154 pdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
..+.+.+.++|+.|++.+=.+.-+++-||.-|+|++.
T Consensus 48 ~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~ 84 (151)
T 3kp7_A 48 SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLE 84 (151)
T ss_dssp HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC-
T ss_pred HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 4567999999999999999999999999999999984
No 88
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=66.52 E-value=4.4 Score=32.79 Aligned_cols=57 Identities=25% Similarity=0.410 Sum_probs=43.7
Q ss_pred CCCCCCcHHHHHHHH----HHHHhhCCCCcccHHHHHhhhc-ceeeehhhhHHhhhhccceeccc
Q 012778 132 PCRYDSSLGLLTKKF----INLIKHAEDGILDLNKAADTLE-VQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 132 ~~R~d~SLglLTkKF----I~Ll~~apdg~idLn~aA~~L~-VqKRRIYDItNVLEGIGLIeK~s 191 (456)
.|.....|..+..++ +.++ . .+.+...++++.|+ +.+..++-.++.||.-|||+|..
T Consensus 12 ~c~~~~~l~~l~~~~~~~IL~~L--~-~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~ 73 (107)
T 2fsw_A 12 ECPVRKSMQIFAGKWTLLIIFQI--N-RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQ 73 (107)
T ss_dssp TCHHHHHHHHHTSSSHHHHHHHH--T-TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHcCccHHHHHHHH--H-hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEee
Confidence 455555566665432 2233 2 67799999999995 99999999999999999999874
No 89
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=66.51 E-value=4.7 Score=32.27 Aligned_cols=45 Identities=18% Similarity=0.269 Sum_probs=38.9
Q ss_pred HHHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 144 KKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 144 kKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
.+.++++++ .|.+.++++|+.|+|+.=-|--.++.||.-|+|.|.
T Consensus 5 ~~Il~~L~~--~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 5 IQVRDLLAL--RGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHH--SCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHH--cCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 456667754 688999999999999988888889999999999997
No 90
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=66.44 E-value=4.2 Score=33.84 Aligned_cols=45 Identities=20% Similarity=0.339 Sum_probs=38.9
Q ss_pred HHHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 144 KKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 144 kKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
.+.+.+++. ++.+...++|+.|++++.-++..++-||.-|+|.+.
T Consensus 7 ~~il~~L~~--~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 7 KIILEILEK--DARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEecc
Confidence 456776654 466899999999999999999999999999999875
No 91
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=66.19 E-value=4.8 Score=32.99 Aligned_cols=39 Identities=10% Similarity=0.081 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHh
Q 012778 142 LTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNV 180 (456)
Q Consensus 142 LTkKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNV 180 (456)
+..++++++.+.....++|.++|+.+++.+|.|.-++.-
T Consensus 8 ~~~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 8 MRTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp HHHHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 567899999988888999999999999999999877654
No 92
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=66.18 E-value=4.4 Score=34.98 Aligned_cols=50 Identities=14% Similarity=0.249 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 139 LGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 139 LglLTkKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
|-.+-++.+.+++. ++.+.+.++|+.|++++..++..++-||.-|+|.+.
T Consensus 8 ld~~~~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 8 LDKTDIKILQVLQE--NGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeee
Confidence 44555678888865 456899999999999999999999999999999974
No 93
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=66.17 E-value=4.1 Score=33.36 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=33.8
Q ss_pred CcccHHHHHhhh-cceeeehhhhHHhhhhccceeccc
Q 012778 156 GILDLNKAADTL-EVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 156 g~idLn~aA~~L-~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
+.+...++|+.| ++.+--++.+++.||.-|||+|..
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~ 70 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRES 70 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEee
Confidence 568999999999 999999999999999999999874
No 94
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=66.01 E-value=4.5 Score=31.05 Aligned_cols=46 Identities=13% Similarity=0.156 Sum_probs=38.3
Q ss_pred HHHHHHHhhCCCCcccHHHHHhhhc----ceeeehhhhHHhhhhccceeccc
Q 012778 144 KKFINLIKHAEDGILDLNKAADTLE----VQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 144 kKFI~Ll~~apdg~idLn~aA~~L~----VqKRRIYDItNVLEGIGLIeK~s 191 (456)
..++.++.. .+.+...++++.|+ +.+=-+|-+++.||.-|+|+|..
T Consensus 12 ~~vL~~L~~--~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 12 LEVMKVIWK--HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp HHHHHHHHT--SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHc--CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEe
Confidence 456666655 56799999999998 46778999999999999999875
No 95
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=66.00 E-value=3.8 Score=33.99 Aligned_cols=36 Identities=22% Similarity=0.330 Sum_probs=32.2
Q ss_pred CcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 156 GILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 156 g~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
+.+.+.++|+.|++.+=-+.-+++-||.-|||+|..
T Consensus 53 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~ 88 (150)
T 3fm5_A 53 EGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTL 88 (150)
T ss_dssp TCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC--
T ss_pred CCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeC
Confidence 348999999999999999999999999999999863
No 96
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=65.62 E-value=3.5 Score=34.89 Aligned_cols=36 Identities=17% Similarity=0.204 Sum_probs=33.7
Q ss_pred CcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 156 GILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 156 g~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
+.+.+.++|+.|++.+=-+.-+++-||.-|||+|..
T Consensus 66 ~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~ 101 (161)
T 3e6m_A 66 GELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSI 101 (161)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 478999999999999999999999999999999873
No 97
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=65.17 E-value=6 Score=32.96 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=33.8
Q ss_pred CCcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 155 DGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 155 dg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
.+.+.+.++|+.|++.+--+.-+++-||.-|||+|.
T Consensus 60 ~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~ 95 (160)
T 3boq_A 60 PDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKA 95 (160)
T ss_dssp TTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC
T ss_pred CCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 456999999999999999999999999999999986
No 98
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=64.91 E-value=3.3 Score=34.35 Aligned_cols=44 Identities=16% Similarity=0.303 Sum_probs=36.6
Q ss_pred HHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 145 KFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 145 KFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
+.+.++.. +.+.+.++|+.|++.+--++-.++.|+..|||++..
T Consensus 25 ~IL~~L~~---~~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~ 68 (118)
T 2jsc_A 25 RILVALLD---GVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATY 68 (118)
T ss_dssp HHHHHHHT---TCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEE
T ss_pred HHHHHHHc---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEE
Confidence 45555543 457888999999999999999999999999998764
No 99
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=64.33 E-value=4.7 Score=34.32 Aligned_cols=50 Identities=12% Similarity=0.165 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 139 LGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 139 LglLTkKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
|..+-++.+.+|+. ++.+.+.++|+.||+++..++..++-|+.-|+|.+.
T Consensus 6 ld~~d~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 55 (152)
T 2cg4_A 6 IDNLDRGILEALMG--NARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGA 55 (152)
T ss_dssp CCHHHHHHHHHHHH--CTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred cCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceE
Confidence 33445678888865 467999999999999999999999999999999974
No 100
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=64.24 E-value=4.8 Score=32.32 Aligned_cols=43 Identities=7% Similarity=0.106 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhc
Q 012778 142 LTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGI 184 (456)
Q Consensus 142 LTkKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGI 184 (456)
+..++++++.+.....++|.++|+.+++++|.|+-+..-.-|+
T Consensus 6 ~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~ 48 (108)
T 3oou_A 6 IIQNVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQKEMGE 48 (108)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCc
Confidence 4567888888877788999999999999999999887655443
No 101
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=64.14 E-value=4.3 Score=32.78 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=33.1
Q ss_pred CcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 156 GILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 156 g~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
+.+.+.++|+.|++.+--++-+++-||.-|+|++.
T Consensus 51 ~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~ 85 (140)
T 2nnn_A 51 GPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRS 85 (140)
T ss_dssp SSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 36899999999999999999999999999999986
No 102
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=64.10 E-value=4.2 Score=32.96 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=33.4
Q ss_pred CcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 156 GILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 156 g~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
+.+.+.++|+.|++.+--++-+++-||.-|+|++..
T Consensus 49 ~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~ 84 (142)
T 2fbi_A 49 GEMESYQLANQACILRPSMTGVLARLERDGIVRRWK 84 (142)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeec
Confidence 348999999999999999999999999999999863
No 103
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=63.79 E-value=5.4 Score=32.84 Aligned_cols=46 Identities=11% Similarity=0.238 Sum_probs=39.5
Q ss_pred HHHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 144 KKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 144 kKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
.+.++++++ .|.+.+.++|+.|+|+.=-|--.++.||.-|+|.|..
T Consensus 5 ~~Il~~L~~--~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 5 MEVRDMLAL--QGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHH--SCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHH--cCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 355667755 6899999999999999888888899999999999984
No 104
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=63.57 E-value=4.9 Score=37.88 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=38.5
Q ss_pred CCcccHHHHHhhhcceeeehhhhHHhhhhccceecccCCeEEE
Q 012778 155 DGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQW 197 (456)
Q Consensus 155 dg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN~i~W 197 (456)
++.+.+.++|+++++..|+++-+..+|.++|++++...+.|.-
T Consensus 39 ~~~~t~~ela~~~~~~~~~l~r~Lr~L~~~g~l~~~~~~~y~~ 81 (334)
T 2ip2_A 39 SGIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQGDTRDGYAN 81 (334)
T ss_dssp TTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEE
T ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHHhCCceEecCCCeEec
Confidence 3679999999999999999999999999999999887666654
No 105
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=62.85 E-value=6.2 Score=31.90 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhh
Q 012778 141 LLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEG 183 (456)
Q Consensus 141 lLTkKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEG 183 (456)
.+..++++++.+.....++|.++|+.+++.+|.|+-++.-.-|
T Consensus 7 ~~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G 49 (113)
T 3oio_A 7 PKLTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYLG 49 (113)
T ss_dssp HHHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHHHC
Confidence 3567889999888888899999999999999999988765443
No 106
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=62.74 E-value=4.8 Score=33.08 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=36.7
Q ss_pred HHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 145 KFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 145 KFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
..+.++...++ .+.++|+.|++.+=-+.-+++-||.-|+|+|..
T Consensus 41 ~iL~~l~~~~~---~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~ 84 (144)
T 3f3x_A 41 SILKATSEEPR---SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIR 84 (144)
T ss_dssp HHHHHHHHSCE---EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHCCC---CHHHHHHHHCCChhHHHHHHHHHHHCCCEEecc
Confidence 34445555443 999999999999999999999999999999873
No 107
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=62.55 E-value=5.9 Score=33.65 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 139 LGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 139 LglLTkKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
|...-.+.+.+++. ++.+.+.++|+.|++.+.-++..++-||.-|+|.+.
T Consensus 5 ld~~~~~iL~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 5 LDDIDRILVRELAA--DGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 33444577787764 467999999999999999999999999999999753
No 108
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=62.06 E-value=4.6 Score=33.60 Aligned_cols=38 Identities=13% Similarity=0.324 Sum_probs=34.7
Q ss_pred CCCcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 154 EDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 154 pdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
..+.+.+.++|+.|++.+--++-+++-||.-|+|+|..
T Consensus 54 ~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~ 91 (155)
T 3cdh_A 54 DNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVA 91 (155)
T ss_dssp SCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 34578999999999999999999999999999999863
No 109
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=61.68 E-value=8.6 Score=35.63 Aligned_cols=45 Identities=20% Similarity=0.405 Sum_probs=38.3
Q ss_pred HHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 145 KFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 145 KFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
+.++++... ++.+.+.++|+.|++.|=-+|-+++.|+..|+|++.
T Consensus 12 ~iL~~l~~~-~~~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~~ 56 (249)
T 1mkm_A 12 EILDFIVKN-PGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRK 56 (249)
T ss_dssp HHHHHHHHC-SSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEC
Confidence 345555543 346899999999999999999999999999999997
No 110
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=61.51 E-value=11 Score=31.96 Aligned_cols=51 Identities=12% Similarity=0.169 Sum_probs=30.9
Q ss_pred eEEEeecCCCCCCc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012778 194 RIQWKGLDVSRPGE-------ADENASSLQAEVESLTIQERRLDEQIRIMQERLRDLS 244 (456)
Q Consensus 194 ~i~W~G~d~s~~~~-------~~~~~~~Lq~El~~L~~eE~~LDelI~~~~q~Lr~Lt 244 (456)
-|.|.|.+..-... +..++..|+..++.|......+.+.|..+.+.|+++.
T Consensus 72 V~v~lG~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 72 VIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999965321111 3344555666666666666666666766666666653
No 111
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=61.36 E-value=6.8 Score=37.13 Aligned_cols=49 Identities=16% Similarity=0.262 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecccC
Q 012778 142 LTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLK 192 (456)
Q Consensus 142 LTkKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sK 192 (456)
...+.+.++.. ++.+.+.++|+.|++.|--++-+++.|+.-|+|++...
T Consensus 153 ~~~~IL~~L~~--~~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~~r 201 (244)
T 2wte_A 153 EEMKLLNVLYE--TKGTGITELAKMLDKSEKTLINKIAELKKFGILTQKGK 201 (244)
T ss_dssp HHHHHHHHHHH--HTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 44556666644 34589999999999999999999999999999999744
No 112
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=61.31 E-value=5.7 Score=33.35 Aligned_cols=38 Identities=13% Similarity=0.188 Sum_probs=34.2
Q ss_pred CCcccHHHHHhhhcceeeehhhhHHhhhhccceecccC
Q 012778 155 DGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLK 192 (456)
Q Consensus 155 dg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sK 192 (456)
++.+.+.++|+.|++.+--++-.++.||..|+|.+...
T Consensus 57 ~~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~ 94 (122)
T 1r1t_A 57 RSELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQ 94 (122)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 36689999999999999999999999999999987543
No 113
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=60.64 E-value=10 Score=31.95 Aligned_cols=37 Identities=24% Similarity=0.211 Sum_probs=33.7
Q ss_pred CcccHHHHHhhhcceeeehhhhHHhhhhccceecccC
Q 012778 156 GILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLK 192 (456)
Q Consensus 156 g~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sK 192 (456)
+.+...++|+.|+|.+=-+--+++.||.-|||++...
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~~~ 89 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPW 89 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEETT
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEecC
Confidence 4578999999999999999999999999999998743
No 114
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=60.48 E-value=64 Score=27.26 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=31.7
Q ss_pred cccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 157 ILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 157 ~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
.+...++|+.|+|.+=.+--+++-||.-|||+|..
T Consensus 46 ~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~ 80 (151)
T 4aik_A 46 EQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHT 80 (151)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeec
Confidence 35678999999999999999999999999999863
No 115
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=60.41 E-value=8 Score=33.40 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=38.2
Q ss_pred HHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 145 KFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 145 KFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
+.+-+|...+++.+.+.++|+.++|.++-+..|+..|...|||+..
T Consensus 18 ~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~ 63 (149)
T 1ylf_A 18 HILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVN 63 (149)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEc
Confidence 3344444446678999999999999999999999999999999854
No 116
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=60.11 E-value=21 Score=30.10 Aligned_cols=52 Identities=13% Similarity=0.155 Sum_probs=41.4
Q ss_pred HHHHHHHHHhh---CCCCcc-cHHHHHhhhcceeeehhhhHHhhhhccceecccCC
Q 012778 142 LTKKFINLIKH---AEDGIL-DLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKN 193 (456)
Q Consensus 142 LTkKFI~Ll~~---apdg~i-dLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN 193 (456)
+...+...+.. .++..+ ...++|+.|+|+|--+-..++.|+.-|||++....
T Consensus 16 i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g~ 71 (126)
T 3by6_A 16 LVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRTIPGK 71 (126)
T ss_dssp HHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred HHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCC
Confidence 33444444433 467778 99999999999999999999999999999987543
No 117
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=59.88 E-value=6.8 Score=34.68 Aligned_cols=50 Identities=24% Similarity=0.356 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 139 LGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 139 LglLTkKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
|..+-++.+.+++. ++.+.+.++|+.|++++--+...++-||.-|+|.+.
T Consensus 15 ld~~d~~IL~~L~~--~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 15 LDDLDRNILRLLKK--DARLTISELSEQLKKPESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 44555688888865 467999999999999999999999999999999864
No 118
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=59.88 E-value=6.4 Score=31.49 Aligned_cols=43 Identities=12% Similarity=0.130 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhc
Q 012778 142 LTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGI 184 (456)
Q Consensus 142 LTkKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGI 184 (456)
+..+.++++.+.....++|.++|+.+++.+|.|+-++.-.-|+
T Consensus 3 ~i~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~~~G~ 45 (108)
T 3mn2_A 3 AVRQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQRSRGY 45 (108)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHHHhCc
Confidence 4567888888877788999999999999999999887754443
No 119
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=59.83 E-value=6 Score=33.44 Aligned_cols=44 Identities=16% Similarity=0.287 Sum_probs=38.8
Q ss_pred HHHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceec
Q 012778 144 KKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEK 189 (456)
Q Consensus 144 kKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK 189 (456)
.+.+.+++. ++.+...++|+.|++.+--+...++.|+.-|+|++
T Consensus 6 ~~il~~L~~--~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 49 (150)
T 2pn6_A 6 LRILKILQY--NAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKG 49 (150)
T ss_dssp HHHHHHHTT--CTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 466676653 56799999999999999999999999999999997
No 120
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=59.83 E-value=11 Score=35.58 Aligned_cols=42 Identities=7% Similarity=0.154 Sum_probs=36.2
Q ss_pred HHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceec
Q 012778 145 KFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEK 189 (456)
Q Consensus 145 KFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK 189 (456)
+.+.++.. +.+...++|+.|++.+--++-.+++|+.-|||+.
T Consensus 16 ~IL~~L~~---g~~s~~ELa~~lglS~stVs~hL~~Le~aGLV~~ 57 (232)
T 2qlz_A 16 DLLSHLTC---MECYFSLLSSKVSVSSTAVAKHLKIMEREGVLQS 57 (232)
T ss_dssp HHHHHHTT---TTTCSSSSCTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHh---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 45556642 5688889999999999999999999999999997
No 121
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=59.19 E-value=6.1 Score=33.65 Aligned_cols=50 Identities=24% Similarity=0.357 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 139 LGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 139 LglLTkKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
|..+-++.+.+++. ++.+.+.++|+.|++++.-+...++-|+.-|+|.+.
T Consensus 5 ld~~~~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 5 LDEIDKKIIKILQN--DGKAPLREISKITGLAESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCC
T ss_pred cCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 33445678888865 467999999999999999999999999999999873
No 122
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=58.96 E-value=14 Score=29.49 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhh---CCCCcc-cHHHHHhhhcceeeehhhhHHhhhhccceecccCC
Q 012778 139 LGLLTKKFINLIKH---AEDGIL-DLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKN 193 (456)
Q Consensus 139 LglLTkKFI~Ll~~---apdg~i-dLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN 193 (456)
...+...+...+.. .++..+ ...++|+.|+|++=-+...++.|+.-|||++....
T Consensus 13 ~~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~~g~ 71 (102)
T 1v4r_A 13 YADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSRGAL 71 (102)
T ss_dssp HHHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEETTT
T ss_pred HHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCC
Confidence 34455555554433 366677 99999999999999999999999999999987533
No 123
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=58.87 E-value=4.8 Score=38.08 Aligned_cols=50 Identities=12% Similarity=0.146 Sum_probs=42.7
Q ss_pred HHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecccCCeEEE
Q 012778 145 KFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQW 197 (456)
Q Consensus 145 KFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN~i~W 197 (456)
++.+.+. +|.+.+.++|+++++..|.++-+..+|.++|++++..++.|.-
T Consensus 29 glf~~l~---~g~~t~~elA~~~~~~~~~l~rlLr~l~~~gl~~~~~~~~y~~ 78 (332)
T 3i53_A 29 RVADHIA---AGHRTAAEIASAAGAHADSLDRLLRHLVAVGLFTRDGQGVYGL 78 (332)
T ss_dssp THHHHHH---TTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSBEEE
T ss_pred ChHHHHh---cCCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEEecCCCeEEc
Confidence 3455553 3689999999999999999999999999999999987777764
No 124
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=58.40 E-value=7.4 Score=33.72 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=44.7
Q ss_pred CCCCCcHHHHHHH--HHHHHhhCCCCcccHHHHHhhh-cceeeehhhhHHhhhhccceeccc
Q 012778 133 CRYDSSLGLLTKK--FINLIKHAEDGILDLNKAADTL-EVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 133 ~R~d~SLglLTkK--FI~Ll~~apdg~idLn~aA~~L-~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
|-....|.+|..| ++-|..-. .|.+..+++++.| ++.++-|...+..||.-|||+|..
T Consensus 14 Cpi~~~l~~lg~kW~l~IL~~L~-~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~ 74 (131)
T 4a5n_A 14 SPVEFTLDVIGGKWKGILFYHMI-DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREV 74 (131)
T ss_dssp CHHHHHHHHHCSSSHHHHHHHHT-TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CcHHHHHHHHcCcCHHHHHHHHh-cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEe
Confidence 4445556666644 22222223 7889999999999 999999999999999999999984
No 125
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=58.17 E-value=2 Score=35.28 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=33.6
Q ss_pred CcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 156 GILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 156 g~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
+.+...++|+.|++.+--++-+++-||.-|+|++..
T Consensus 53 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~ 88 (147)
T 1z91_A 53 ETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKR 88 (147)
T ss_dssp SEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCB
T ss_pred CCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEecc
Confidence 468999999999999999999999999999999863
No 126
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=56.30 E-value=10 Score=33.59 Aligned_cols=46 Identities=20% Similarity=0.232 Sum_probs=39.2
Q ss_pred HHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 145 KFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 145 KFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
+.+.+|...+++.+...++|+.++|.+.-|.-|+..|..-|||+-.
T Consensus 16 r~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~ 61 (162)
T 3k69_A 16 HSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGT 61 (162)
T ss_dssp HHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 4455555556788999999999999999999999999999999754
No 127
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=55.94 E-value=8.7 Score=30.42 Aligned_cols=43 Identities=14% Similarity=0.157 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhCCCC-cccHHHHHhhhcceeeehhhhHHhhhhc
Q 012778 142 LTKKFINLIKHAEDG-ILDLNKAADTLEVQKRRIYDITNVLEGI 184 (456)
Q Consensus 142 LTkKFI~Ll~~apdg-~idLn~aA~~L~VqKRRIYDItNVLEGI 184 (456)
+..++++++.+.... .++|.++|+.+++.+|.|+-++.-.-|+
T Consensus 3 ~~~~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~g~ 46 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKNFGI 46 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCc
Confidence 456777777776554 8999999999999999998877654443
No 128
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=55.13 E-value=18 Score=32.52 Aligned_cols=57 Identities=11% Similarity=0.098 Sum_probs=43.0
Q ss_pred CCcHHHHH-HHHHHHHh---hCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecccC
Q 012778 136 DSSLGLLT-KKFINLIK---HAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLK 192 (456)
Q Consensus 136 d~SLglLT-kKFI~Ll~---~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sK 192 (456)
..+|.... ..+.+.+. -.|+..+...++|+.|||+|=-|=+.+..|+.-|||+....
T Consensus 14 ~~~~~~~v~~~l~~~I~~g~l~pG~~L~E~~La~~lgVSRtpVREAl~~L~~eGlv~~~~~ 74 (222)
T 3ihu_A 14 DGSASDTVFFGIMSGLELGTFVPGQRLVETDLVAHFGVGRNSVREALQRLAAEGIVDLQRH 74 (222)
T ss_dssp --CHHHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECST
T ss_pred cCcHHHHHHHHHHHHHHhCCCCCCCccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 34555443 34444442 24888999999999999999999999999999999996643
No 129
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=54.81 E-value=7.1 Score=36.41 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=39.9
Q ss_pred HHHHHHhh--CCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecccCCeE
Q 012778 145 KFINLIKH--AEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRI 195 (456)
Q Consensus 145 KFI~Ll~~--apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN~i 195 (456)
|-+.+|.. ..++.+.+.++|+.|++.|=-+|-+++.|+..|+|++.. ..|
T Consensus 15 r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~~G~v~~~~-~~Y 66 (257)
T 2g7u_A 15 RGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGSG-GRW 66 (257)
T ss_dssp HHHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEE
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCC-CEE
Confidence 44444432 235679999999999999999999999999999999974 444
No 130
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=54.73 E-value=11 Score=35.19 Aligned_cols=41 Identities=5% Similarity=0.131 Sum_probs=36.4
Q ss_pred CCcccHHHHHhhhcceeeehhhhHHhhhhccceecccCCeE
Q 012778 155 DGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRI 195 (456)
Q Consensus 155 dg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN~i 195 (456)
++.+.+.++|+.|++.|--+|-+++.|+..|+|++.....|
T Consensus 36 ~~~~~~~eia~~~gl~kstv~r~l~tL~~~G~v~~~~~~~Y 76 (260)
T 2o0y_A 36 HPTRSLKELVEGTKLPKTTVVRLVATMCARSVLTSRADGSY 76 (260)
T ss_dssp BSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEECTTSCE
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCCCeE
Confidence 45799999999999999999999999999999999754433
No 131
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=54.27 E-value=6 Score=37.04 Aligned_cols=42 Identities=19% Similarity=0.267 Sum_probs=36.8
Q ss_pred CCcccHHHHHhhhcceeeehhhhHHhhhhccceecccCCeEEE
Q 012778 155 DGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQW 197 (456)
Q Consensus 155 dg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN~i~W 197 (456)
++.+.+.++|+++++..|+++-+.++|.++|++++. .+.|.-
T Consensus 37 ~~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~l~~~-~~~y~~ 78 (335)
T 2r3s_A 37 QGIESSQSLAQKCQTSERGMRMLCDYLVIIGFMTKQ-AEGYRL 78 (335)
T ss_dssp TSEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEEE
T ss_pred cCCCCHHHHHHHhCCCchHHHHHHHHHHhcCCeEec-CCEEec
Confidence 478999999999999999999999999999999874 455543
No 132
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=54.23 E-value=6.3 Score=37.80 Aligned_cols=42 Identities=12% Similarity=0.129 Sum_probs=37.6
Q ss_pred CCCcccHHHHHhhhcceeeehhhhHHhhhhccceecccCCeEE
Q 012778 154 EDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQ 196 (456)
Q Consensus 154 pdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN~i~ 196 (456)
.++.+.+.++|+++++..|.++-+..+|.++|++++ ..+.|.
T Consensus 52 ~~g~~t~~elA~~~g~~~~~l~rlLr~l~~~g~l~~-~~~~y~ 93 (348)
T 3lst_A 52 VDGPRTPAELAAATGTDADALRRVLRLLAVRDVVRE-SDGRFA 93 (348)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-ETTEEE
T ss_pred hCCCCCHHHHHHHhCcCHHHHHHHHHHHHhCCCEEe-cCCEEe
Confidence 457899999999999999999999999999999999 556554
No 133
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=54.16 E-value=7.6 Score=32.27 Aligned_cols=43 Identities=14% Similarity=0.223 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhh
Q 012778 141 LLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEG 183 (456)
Q Consensus 141 lLTkKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEG 183 (456)
.+..++++++.+.....+.|.++|+.+++.+|.|+-++.-.-|
T Consensus 11 ~~i~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~~G 53 (129)
T 1bl0_A 11 ITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETG 53 (129)
T ss_dssp HHHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHHC
Confidence 4667899999888888899999999999999999887764433
No 134
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=53.47 E-value=26 Score=29.41 Aligned_cols=52 Identities=15% Similarity=0.130 Sum_probs=41.5
Q ss_pred HHHHHHHHHhh---CCCCcc-cHHHHHhhhcceeeehhhhHHhhhhccceecccCC
Q 012778 142 LTKKFINLIKH---AEDGIL-DLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKN 193 (456)
Q Consensus 142 LTkKFI~Ll~~---apdg~i-dLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN 193 (456)
+...+...+.. .++..+ ...++|+.|+|++=-+-..+..|+.-|+|++....
T Consensus 18 i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~ 73 (125)
T 3neu_A 18 ISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM 73 (125)
T ss_dssp HHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCC
Confidence 44555555543 467777 59999999999999999999999999999987543
No 135
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=53.32 E-value=7.2 Score=32.11 Aligned_cols=57 Identities=23% Similarity=0.317 Sum_probs=41.7
Q ss_pred CCcHHHHHHHHH-HHHhhCCCCccc--HHHHHhhh-cceeeehhhhHHhhhhccceecccC
Q 012778 136 DSSLGLLTKKFI-NLIKHAEDGILD--LNKAADTL-EVQKRRIYDITNVLEGIGLIEKKLK 192 (456)
Q Consensus 136 d~SLglLTkKFI-~Ll~~apdg~id--Ln~aA~~L-~VqKRRIYDItNVLEGIGLIeK~sK 192 (456)
...|..|..+.- .++..-..|... .+++++.| ++.+.-+.-.+..||.-|||+|...
T Consensus 18 ~~~l~~l~~~wrl~IL~~L~~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~ 78 (111)
T 3df8_A 18 ESVLHLLGKKYTMLIISVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG 78 (111)
T ss_dssp SSTHHHHHSTTHHHHHHHHTSSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES
T ss_pred HHHHHHHcCccHHHHHHHHhcCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec
Confidence 445666664321 111111255666 99999999 9999999999999999999999754
No 136
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=53.25 E-value=12 Score=29.89 Aligned_cols=41 Identities=10% Similarity=0.088 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhCCC-CcccHHHHHhhhcceeeehhhhHHhhh
Q 012778 142 LTKKFINLIKHAED-GILDLNKAADTLEVQKRRIYDITNVLE 182 (456)
Q Consensus 142 LTkKFI~Ll~~apd-g~idLn~aA~~L~VqKRRIYDItNVLE 182 (456)
...+.++++.+... ..++|.++|+.+++++|.|.-+..-.-
T Consensus 4 ~i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~ 45 (107)
T 2k9s_A 4 RVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQL 45 (107)
T ss_dssp HHHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34678888888776 899999999999999999988776443
No 137
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=52.71 E-value=18 Score=31.64 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=23.4
Q ss_pred cccHHHHHhhhcceee--ehhhhHHhhhhcccee--cccCCeEEE
Q 012778 157 ILDLNKAADTLEVQKR--RIYDITNVLEGIGLIE--KKLKNRIQW 197 (456)
Q Consensus 157 ~idLn~aA~~L~VqKR--RIYDItNVLEGIGLIe--K~sKN~i~W 197 (456)
.+.+.++|+.+||..+ |.| |-.|||. +...|.++.
T Consensus 4 ~~tI~evA~~~Gvs~~tLR~y------e~~GLl~p~~r~~~g~R~ 42 (146)
T 3hh0_A 4 AWLISEFASVGDVTVRALRYY------DKINLLKPSDYTEGGHRL 42 (146)
T ss_dssp CBCHHHHHHHHTCCHHHHHHH------HHTTSSCCSEECTTSCEE
T ss_pred CCcHHHHHHHHCcCHHHHHHH------HHCCCCCCCeECCCCCEe
Confidence 4678899999999877 445 5567774 234455554
No 138
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=52.60 E-value=12 Score=35.01 Aligned_cols=45 Identities=9% Similarity=0.050 Sum_probs=38.1
Q ss_pred CCcccHHHHHhhhcceeeehhhhHHhhhhccceecccCCeEEEeecC
Q 012778 155 DGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLD 201 (456)
Q Consensus 155 dg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN~i~W~G~d 201 (456)
++.+.+.++|+.|++.|=-+|-+++.|+..|+|++.. ..|. .|..
T Consensus 34 ~~~~~~~eia~~~gl~~stv~r~l~tL~~~G~v~~~~-~~Y~-Lg~~ 78 (265)
T 2ia2_A 34 NQRRTLSDVARATDLTRATARRFLLTLVELGYVATDG-SAFW-LTPR 78 (265)
T ss_dssp CSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEESS-SEEE-ECGG
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecC-CEEE-EcHH
Confidence 4679999999999999999999999999999999973 4453 4533
No 139
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=52.37 E-value=4.5 Score=32.81 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=32.8
Q ss_pred CcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 156 GILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 156 g~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
+.+...++|+.|++.+-.++-+++-||.-|+|++.
T Consensus 47 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~ 81 (138)
T 1jgs_A 47 ACITPVELKKVLSVDLGALTRMLDRLVCKGWVERL 81 (138)
T ss_dssp SSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEec
Confidence 45789999999999999999999999999999986
No 140
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=51.99 E-value=9.6 Score=32.27 Aligned_cols=35 Identities=14% Similarity=0.157 Sum_probs=32.7
Q ss_pred ccHHHHHhhhcceeeehhhhHHhhhhccceecccC
Q 012778 158 LDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLK 192 (456)
Q Consensus 158 idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sK 192 (456)
+...++|+.+++..+-+..+++-||.-|+|++...
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~ 86 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEH 86 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC-
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeE
Confidence 79999999999999999999999999999999744
No 141
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=51.84 E-value=9.8 Score=33.70 Aligned_cols=50 Identities=24% Similarity=0.357 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 139 LGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 139 LglLTkKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
|..+-++++.+|+. ++.+.+.++|+.|++++.-+...++-||.-|+|++.
T Consensus 25 ld~~d~~IL~~L~~--~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 25 LDEIDKKIIKILQN--DGKAPLREISKITGLAESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCC
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEee
Confidence 55566788888876 467999999999999999999999999999999873
No 142
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=51.82 E-value=6.3 Score=38.27 Aligned_cols=44 Identities=9% Similarity=0.216 Sum_probs=39.0
Q ss_pred CCCcccHHHHHhhhcceeeehhhhHHhhhhccceecccCCe-EEE
Q 012778 154 EDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNR-IQW 197 (456)
Q Consensus 154 pdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN~-i~W 197 (456)
.++.+.+.++|+++++..|.++-+..+|.++|++++...+. |.-
T Consensus 68 ~~g~~t~~eLA~~~g~~~~~l~rlLr~L~~~g~l~~~~~~~~y~~ 112 (369)
T 3gwz_A 68 QEGPRTATALAEATGAHEQTLRRLLRLLATVGVFDDLGHDDLFAQ 112 (369)
T ss_dssp TTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEECSSTTEEEC
T ss_pred cCCCCCHHHHHHHHCcCHHHHHHHHHHHHhCCCEEEeCCCceEec
Confidence 46789999999999999999999999999999999976665 543
No 143
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=51.80 E-value=8.6 Score=30.89 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=33.7
Q ss_pred CCCcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 154 EDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 154 pdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
++..+...++|+.|+|.+=-+...++.|+.-|+|++.
T Consensus 30 ~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 30 KGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp HCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred cCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3445899999999999999999999999999999876
No 144
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=51.63 E-value=15 Score=33.05 Aligned_cols=40 Identities=15% Similarity=0.167 Sum_probs=36.8
Q ss_pred CCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecccC
Q 012778 153 AEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLK 192 (456)
Q Consensus 153 apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sK 192 (456)
.|+..+.-.++|+.|||+|=-|=+.+..|+.-|||+....
T Consensus 31 ~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~ 70 (218)
T 3sxy_A 31 KLGEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVVPR 70 (218)
T ss_dssp CTTCEECHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEETT
T ss_pred CCCCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 4788899999999999999999999999999999997644
No 145
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=51.12 E-value=10 Score=32.19 Aligned_cols=36 Identities=17% Similarity=0.196 Sum_probs=29.3
Q ss_pred CCcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 155 DGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 155 dg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
++.+...++|+.|++.+=-+--+++-||.-|||++.
T Consensus 50 ~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr~~ 85 (148)
T 4fx0_A 50 GIDLTMSELAARIGVERTTLTRNLEVMRRDGLVRVM 85 (148)
T ss_dssp ----CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC--
T ss_pred CCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 467999999999999999999999999999999654
No 146
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=50.73 E-value=21 Score=30.31 Aligned_cols=50 Identities=16% Similarity=0.074 Sum_probs=40.2
Q ss_pred HHHHHHHhh---CCCCcc-cHHHHHhhhcceeeehhhhHHhhhhccceecccCC
Q 012778 144 KKFINLIKH---AEDGIL-DLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKN 193 (456)
Q Consensus 144 kKFI~Ll~~---apdg~i-dLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN 193 (456)
..+...+.. .++..+ ...++|+.|+|+|--+-..++.|+.-|||++....
T Consensus 11 ~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~~~g~ 64 (129)
T 2ek5_A 11 SLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYKKRGI 64 (129)
T ss_dssp HHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEETTT
T ss_pred HHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEecCC
Confidence 344444433 467778 89999999999999999999999999999987543
No 147
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=50.55 E-value=34 Score=29.80 Aligned_cols=52 Identities=10% Similarity=0.128 Sum_probs=27.8
Q ss_pred CeEEEeecCCCCCCc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012778 193 NRIQWKGLDVSRPGE-------ADENASSLQAEVESLTIQERRLDEQIRIMQERLRDLS 244 (456)
Q Consensus 193 N~i~W~G~d~s~~~~-------~~~~~~~Lq~El~~L~~eE~~LDelI~~~~q~Lr~Lt 244 (456)
+-+.|.|.+..-... +..++..|+..++.|......+.+.|..+...|+.+.
T Consensus 81 ~V~v~lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~ 139 (151)
T 2zdi_C 81 NAIVSVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQ 139 (151)
T ss_dssp EEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred EEEEEeCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788865321111 2334455555555555555555555555555555553
No 148
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=50.47 E-value=7.8 Score=37.03 Aligned_cols=49 Identities=16% Similarity=0.249 Sum_probs=39.6
Q ss_pred HHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecccCC--eEEE
Q 012778 146 FINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKN--RIQW 197 (456)
Q Consensus 146 FI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN--~i~W 197 (456)
.+++|. ++.+.+.++|+++++..+.++-+..+|..+|++++...+ .|.-
T Consensus 41 i~~~l~---~~~~t~~eLA~~~g~~~~~l~r~Lr~L~~~Gll~~~~~~~~~y~~ 91 (374)
T 1qzz_A 41 LVDHLL---AGADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGEKQGRPLRP 91 (374)
T ss_dssp HHHHHH---TTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECCCC-CCCCEE
T ss_pred hHHHHh---CCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCEEEeCCCCeEEEE
Confidence 445553 467999999999999999999999999999999986555 4443
No 149
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=50.39 E-value=18 Score=29.80 Aligned_cols=52 Identities=17% Similarity=0.239 Sum_probs=41.5
Q ss_pred HHHHHHHHHhh---CCCCcc-cHHHHHhhhcceeeehhhhHHhhhhccceecccCC
Q 012778 142 LTKKFINLIKH---AEDGIL-DLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKN 193 (456)
Q Consensus 142 LTkKFI~Ll~~---apdg~i-dLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN 193 (456)
+...+...+.. .++..+ ...++|+.|+|+|--+-..++.|+.-|+|++....
T Consensus 14 i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~~~~ 69 (113)
T 3tqn_A 14 LRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKRRGL 69 (113)
T ss_dssp HHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred HHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCC
Confidence 34455555543 467777 89999999999999999999999999999977443
No 150
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=49.95 E-value=41 Score=31.38 Aligned_cols=54 Identities=17% Similarity=0.250 Sum_probs=42.5
Q ss_pred HHHHHHhh--CCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecccC-CeEEEee
Q 012778 145 KFINLIKH--AEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLK-NRIQWKG 199 (456)
Q Consensus 145 KFI~Ll~~--apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sK-N~i~W~G 199 (456)
|-+.+|.. ..++.+.+.++|+.|++.|=-+|-+++.|+..|+|++... ..|+ .|
T Consensus 7 Ral~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~~~~~~~~Y~-lG 63 (260)
T 3r4k_A 7 KALTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQEAGFVEQVEGARSYR-LG 63 (260)
T ss_dssp HHHHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEECSSSSEEE-EC
T ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCCCCcEE-cC
Confidence 44444432 1357899999999999999999999999999999999865 4443 45
No 151
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=49.24 E-value=25 Score=28.35 Aligned_cols=56 Identities=13% Similarity=0.133 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHhhhcceee-ehhhhHHhhhhccceecccCCeEEEe
Q 012778 141 LLTKKFINLIKHAEDGILDLNKAADTLEVQKR-RIYDITNVLEGIGLIEKKLKNRIQWK 198 (456)
Q Consensus 141 lLTkKFI~Ll~~apdg~idLn~aA~~L~VqKR-RIYDItNVLEGIGLIeK~sKN~i~W~ 198 (456)
..-.+.+.+|+.. |.....++|+.|++.+= -+==..+.||.=|||++.+.+.-.|.
T Consensus 11 ~~~~~IL~~Lk~~--g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~~~~gRP~w~ 67 (79)
T 1xmk_A 11 EIKEKICDYLFNV--SDSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQGTTPPIWH 67 (79)
T ss_dssp HHHHHHHHHHHHT--CCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEECSSSCEEE
T ss_pred hHHHHHHHHHHHc--CCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEecCCCCCCeE
Confidence 4557888888775 45779999999999874 77777888999999998876666774
No 152
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=49.17 E-value=41 Score=25.06 Aligned_cols=37 Identities=16% Similarity=0.304 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012778 209 DENASSLQAEVESLTIQERRLDEQIRIMQERLRDLSE 245 (456)
Q Consensus 209 ~~~~~~Lq~El~~L~~eE~~LDelI~~~~q~Lr~Lte 245 (456)
..++..|+.+--+|+..|+.|+..|..+...|-.|-.
T Consensus 9 rkkiarlkkdnlqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 9 RKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 3467888888888999999999999999998877743
No 153
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=48.89 E-value=14 Score=31.40 Aligned_cols=53 Identities=11% Similarity=0.201 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHhhh--cceeeehhhhHHhhhhccceecccCC
Q 012778 139 LGLLTKKFINLIKHAEDGILDLNKAADTL--EVQKRRIYDITNVLEGIGLIEKKLKN 193 (456)
Q Consensus 139 LglLTkKFI~Ll~~apdg~idLn~aA~~L--~VqKRRIYDItNVLEGIGLIeK~sKN 193 (456)
+...-++.+++|+. +|.+...++|+.+ ++++-.+-.-+++|+.-|||++....
T Consensus 11 md~~d~~IL~~L~~--~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~~rg 65 (111)
T 3b73_A 11 MTIWDDRILEIIHE--EGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPLANG 65 (111)
T ss_dssp CCHHHHHHHHHHHH--HSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEECSTT
T ss_pred cCHHHHHHHHHHHH--cCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEecCCc
Confidence 34444788888865 3589999999999 99999999999999999999987544
No 154
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=48.14 E-value=74 Score=26.13 Aligned_cols=44 Identities=16% Similarity=0.269 Sum_probs=29.4
Q ss_pred HHHHhhCCCCcccHHHHHhhh---c--cee-eehhhhHHhhhhccceecc
Q 012778 147 INLIKHAEDGILDLNKAADTL---E--VQK-RRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 147 I~Ll~~apdg~idLn~aA~~L---~--VqK-RRIYDItNVLEGIGLIeK~ 190 (456)
+.+|...+-.-.+|.+..... . +.. --||-+++-||.-|||++.
T Consensus 19 L~~L~~~~~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~GlI~~~ 68 (118)
T 2esh_A 19 LLLVAEKPSHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTE 68 (118)
T ss_dssp HHHHHHSCBCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEE
T ss_pred HHHHHcCCCCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCCCeEEE
Confidence 344544443334443333322 3 888 9999999999999999986
No 155
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=47.19 E-value=12 Score=30.19 Aligned_cols=46 Identities=17% Similarity=0.238 Sum_probs=38.0
Q ss_pred HHHHHHHhhCCCCcccHHHHHhhhc----ceeeehhhhHHhhhhccceeccc
Q 012778 144 KKFINLIKHAEDGILDLNKAADTLE----VQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 144 kKFI~Ll~~apdg~idLn~aA~~L~----VqKRRIYDItNVLEGIGLIeK~s 191 (456)
...+.++.. .+.+...++|+.|+ +.+=-+|-+++.||.-|+|+|..
T Consensus 13 ~~vL~~l~~--~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~ 62 (123)
T 1okr_A 13 WEVMNIIWM--KKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKK 62 (123)
T ss_dssp HHHHHHHHH--HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHh--CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEe
Confidence 345555544 45689999999999 67999999999999999999874
No 156
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=46.74 E-value=13 Score=31.76 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=34.8
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCCcccHHHHHhhhcceeeehhh
Q 012778 134 RYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYD 176 (456)
Q Consensus 134 R~d~SLglLTkKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYD 176 (456)
|.+..=..|....++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 25 r~~~~r~~Il~aa~~lf~~~G~~~~tv~~IA~~agvs~~t~Y~ 67 (215)
T 2qko_A 25 QNPERRAALVNAAIEVLAREGARGLTFRAVDVEANVPKGTASN 67 (215)
T ss_dssp --CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHSSSTTTCHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhChhhccHHHHHHHcCCCcchHHH
Confidence 3455556778889999988776789999999999999999994
No 157
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=46.23 E-value=11 Score=35.75 Aligned_cols=43 Identities=16% Similarity=0.235 Sum_probs=37.9
Q ss_pred CCcccHHHHHhhhcceeeehhhhHHhhhhccceecccCCeEEE
Q 012778 155 DGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQW 197 (456)
Q Consensus 155 dg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN~i~W 197 (456)
++.+.+.++|+.+++..+.++-+..+|...||+++.....|.-
T Consensus 50 ~~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~~~~~~~g~y~~ 92 (360)
T 1tw3_A 50 AGARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDAPGEFVP 92 (360)
T ss_dssp TTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEETTEEEE
T ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEecCCCeEEe
Confidence 4678999999999999999999999999999999865666554
No 158
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=46.01 E-value=14 Score=35.69 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=38.3
Q ss_pred HHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecccCCeE
Q 012778 147 INLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRI 195 (456)
Q Consensus 147 I~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN~i 195 (456)
.++|.. .++.+.+.++|+++++..|.++-+..+|.++|++++. .+.|
T Consensus 41 fd~L~~-~~~~~t~~eLA~~~g~~~~~l~rlLr~l~~~g~l~~~-~~~y 87 (363)
T 3dp7_A 41 FQLLSG-KREGYTLQEISGRTGLTRYAAQVLLEASLTIGTILLE-EDRY 87 (363)
T ss_dssp HHHHHT-CTTCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE-TTEE
T ss_pred HHHHHh-cCCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCeEec-CCEE
Confidence 344433 2478999999999999999999999999999999885 4443
No 159
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=45.86 E-value=11 Score=37.31 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=39.5
Q ss_pred HHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 146 FINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 146 FI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
++.+|.+.+++.+.+.++|+.|++.+=.|==+++-||.-|||+|..
T Consensus 409 vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~~g~v~r~~ 454 (487)
T 1hsj_A 409 ILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKR 454 (487)
T ss_dssp HHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCEE
T ss_pred HHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecC
Confidence 3444455556889999999999999999999999999999999973
No 160
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=44.84 E-value=12 Score=32.60 Aligned_cols=36 Identities=6% Similarity=0.039 Sum_probs=33.2
Q ss_pred CCcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 155 DGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 155 dg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
..-.+..++|+++++..+-|+.+++-|+.=|+|++.
T Consensus 49 ~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 49 SYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp CCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 345799999999999999999999999999999985
No 161
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=44.82 E-value=13 Score=35.67 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=37.0
Q ss_pred CCcccHHHHHhhhcceeeehhhhHHhhhhccceecccCCeEEE
Q 012778 155 DGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQW 197 (456)
Q Consensus 155 dg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN~i~W 197 (456)
++.+.+.++|+++++..|+++-+..+|.++|++++.. +.|.-
T Consensus 62 ~~~~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~-~~y~~ 103 (359)
T 1x19_A 62 EGPKDLATLAADTGSVPPRLEMLLETLRQMRVINLED-GKWSL 103 (359)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEEE
T ss_pred CCCCCHHHHHHHhCcChHHHHHHHHHHHhCCCeEeeC-CeEec
Confidence 4789999999999999999999999999999999874 44443
No 162
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=44.70 E-value=14 Score=35.95 Aligned_cols=44 Identities=18% Similarity=0.192 Sum_probs=37.9
Q ss_pred HHHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceec
Q 012778 144 KKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEK 189 (456)
Q Consensus 144 kKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK 189 (456)
.+.+.+|+ .++.+...++|+.|+|+++-||--++.|+..|++..
T Consensus 8 ~~Il~~L~--~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~i~ 51 (321)
T 1bia_A 8 LKLIALLA--NGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDVF 51 (321)
T ss_dssp HHHHHHHT--TSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHH--cCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEE
Confidence 45667774 567899999999999999999999999999998853
No 163
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=43.84 E-value=23 Score=30.50 Aligned_cols=46 Identities=17% Similarity=0.295 Sum_probs=37.6
Q ss_pred HHHHHHHhhCC-CCcccHHHHHhhhcceeeehhhhHHhhhhccceec
Q 012778 144 KKFINLIKHAE-DGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEK 189 (456)
Q Consensus 144 kKFI~Ll~~ap-dg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK 189 (456)
-+.+.+|-..+ ++.+.+.++|+.+++.++-+.-|+..|..-|||+-
T Consensus 14 l~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s 60 (143)
T 3t8r_A 14 LTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRS 60 (143)
T ss_dssp HHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEe
Confidence 34444454444 45799999999999999999999999999999984
No 164
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=43.32 E-value=12 Score=29.39 Aligned_cols=36 Identities=11% Similarity=0.131 Sum_probs=32.3
Q ss_pred CCCcccHHHHHhhhcceeeehhhhHHhhhhccceec
Q 012778 154 EDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEK 189 (456)
Q Consensus 154 pdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK 189 (456)
+++.+.+.++|+.|++.|=-++-+++.||.-|+|..
T Consensus 27 ~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~ 62 (95)
T 2qvo_A 27 GGNDVYIQYIASKVNSPHSYVWLIIKKFEEAKMVEC 62 (95)
T ss_dssp TTCCEEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCccC
Confidence 344689999999999999999999999999999943
No 165
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=43.10 E-value=54 Score=24.73 Aligned_cols=38 Identities=24% Similarity=0.437 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 012778 209 DENASSLQAEVESLTIQERRLDEQIRIMQERLRDLSED 246 (456)
Q Consensus 209 ~~~~~~Lq~El~~L~~eE~~LDelI~~~~q~Lr~Lted 246 (456)
..+...|+.++..|..+..+|-+.++.+.++|..|.+.
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkee 45 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREE 45 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999999999988664
No 166
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=43.07 E-value=49 Score=25.25 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012778 211 NASSLQAEVESLTIQERRLDEQIRIMQERLRDLS 244 (456)
Q Consensus 211 ~~~~Lq~El~~L~~eE~~LDelI~~~~q~Lr~Lt 244 (456)
.+..|+.+++.|..+-..|...|..+++++..|.
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667888888888888888888888887776664
No 167
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=42.58 E-value=45 Score=25.10 Aligned_cols=32 Identities=13% Similarity=0.208 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012778 210 ENASSLQAEVESLTIQERRLDEQIRIMQERLR 241 (456)
Q Consensus 210 ~~~~~Lq~El~~L~~eE~~LDelI~~~~q~Lr 241 (456)
..+..|+.|++.|+.+-..|-+.+.++..+|.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46889999999999999999999988888775
No 168
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=42.44 E-value=11 Score=31.11 Aligned_cols=39 Identities=26% Similarity=0.309 Sum_probs=35.3
Q ss_pred CCCCcc-cHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 153 AEDGIL-DLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 153 apdg~i-dLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
.+++.+ ...++|+.|+|++=-+-..++.|+.-|+|++..
T Consensus 38 ~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 38 DGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp BTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 356666 999999999999999999999999999999875
No 169
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=42.29 E-value=13 Score=33.24 Aligned_cols=38 Identities=21% Similarity=0.143 Sum_probs=33.8
Q ss_pred CCCcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 154 EDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 154 pdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
.+....+.++|+.|++.+--++..++.||.-|+|.+..
T Consensus 21 ~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~~~ 58 (196)
T 3k2z_A 21 NGYPPSVREIARRFRITPRGALLHLIALEKKGYIERKN 58 (196)
T ss_dssp HSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC-
T ss_pred hCCCCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEecC
Confidence 45578999999999998889999999999999999863
No 170
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=42.11 E-value=22 Score=28.75 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceec
Q 012778 142 LTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEK 189 (456)
Q Consensus 142 LTkKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK 189 (456)
|...||++++. ..++.|.++|..+++..--.-|=++-||.-|.|.=
T Consensus 8 ll~~Fi~yIk~--~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltG 53 (72)
T 1wi9_A 8 FLTEFINYIKK--SKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTG 53 (72)
T ss_dssp HHHHHHHHHHH--CSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCE
T ss_pred HHHHHHHHHHH--cCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEE
Confidence 44899999987 46899999999999976666677777887776653
No 171
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=42.07 E-value=73 Score=29.23 Aligned_cols=41 Identities=7% Similarity=0.104 Sum_probs=28.0
Q ss_pred CcccHHHHHhhhcceeeehhhhHHhhhhcccee--cc-cCCeEEEeec
Q 012778 156 GILDLNKAADTLEVQKRRIYDITNVLEGIGLIE--KK-LKNRIQWKGL 200 (456)
Q Consensus 156 g~idLn~aA~~L~VqKRRIYDItNVLEGIGLIe--K~-sKN~i~W~G~ 200 (456)
..+.+.++|+.+||.+|-|- -.|.+||+. +. ..|.++.-..
T Consensus 4 ~~~~i~e~a~~~gvs~~tlr----~y~~~gll~p~~~d~~~g~R~y~~ 47 (278)
T 1r8e_A 4 SYYSIGEVSKLANVSIKALR----YYDKIDLFKPAYVDPDTSYRYYTD 47 (278)
T ss_dssp CEEEHHHHHHHHTCCHHHHH----HHHHTTSSCCSEECTTTCCEEEET
T ss_pred CcEeHHHHHHHHCcCHHHHH----HHHHCCCCCCCccCCCCCccccCH
Confidence 35788999999999888662 225667774 33 4677776543
No 172
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=41.29 E-value=15 Score=35.17 Aligned_cols=51 Identities=16% Similarity=0.208 Sum_probs=39.5
Q ss_pred HHHHHhhCCCCcccHHHHHhhhcc---eeeehhhhHHhhhhccceecc--cCCeEEE
Q 012778 146 FINLIKHAEDGILDLNKAADTLEV---QKRRIYDITNVLEGIGLIEKK--LKNRIQW 197 (456)
Q Consensus 146 FI~Ll~~apdg~idLn~aA~~L~V---qKRRIYDItNVLEGIGLIeK~--sKN~i~W 197 (456)
.++.+... ++.+.+.++|+++++ ..++++-+..+|.++|++++. ..+.|.-
T Consensus 41 if~~L~~~-~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~y~~ 96 (352)
T 1fp2_A 41 IPNIIQNH-GKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITKEEESYAL 96 (352)
T ss_dssp HHHHHHHH-TSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEESSSEEEEE
T ss_pred hhhhhhhc-CCCccHHHHHHHhCcCCCChHHHHHHHHHHHhCCeEEEecCCCCeEeC
Confidence 34444432 357999999999999 588999999999999999987 3455544
No 173
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=40.66 E-value=17 Score=31.45 Aligned_cols=47 Identities=17% Similarity=0.386 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 142 LTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 142 LTkKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
+-++.+.+|+. ++.+...++|+.||++.--+..-++-||.-|+|.+.
T Consensus 4 ~d~~il~~L~~--~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 4 LDRKILRILQE--DSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHHTT--CSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHH--CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeec
Confidence 34577777754 678899999999999999999999999999999964
No 174
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=40.28 E-value=19 Score=32.62 Aligned_cols=44 Identities=23% Similarity=0.468 Sum_probs=38.7
Q ss_pred HHHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 144 KKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 144 kKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
.+.+.++. ++.+...++|+.|++.+--++-.++.||.-|+|++.
T Consensus 23 ~~IL~~L~---~~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 23 RKILKLLR---NKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHHHHT---TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 45666665 367999999999999999999999999999999987
No 175
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=39.95 E-value=12 Score=28.26 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=23.9
Q ss_pred CCCcccHHHHHhhhcceeeehhhhHH
Q 012778 154 EDGILDLNKAADTLEVQKRRIYDITN 179 (456)
Q Consensus 154 pdg~idLn~aA~~L~VqKRRIYDItN 179 (456)
++..+.+.++|+.|+|+|..||..++
T Consensus 7 ~~~~l~~~eva~~lgvsrstiy~~~~ 32 (66)
T 1z4h_A 7 PDSLVDLKFIMADTGFGKTFIYDRIK 32 (66)
T ss_dssp SSSEECHHHHHHHHSSCHHHHHHHHH
T ss_pred cccccCHHHHHHHHCcCHHHHHHHHH
Confidence 46689999999999999999999987
No 176
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=38.95 E-value=18 Score=34.13 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=38.2
Q ss_pred HHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 147 INLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 147 I~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
+..+...+++.+...++|+.|++.+=.+--+++-||.-|+|+|..
T Consensus 164 L~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~GlV~R~~ 208 (250)
T 1p4x_A 164 LAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKER 208 (250)
T ss_dssp HHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEEE
T ss_pred HHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeeC
Confidence 344444454579999999999999999999999999999999973
No 177
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=38.58 E-value=21 Score=32.96 Aligned_cols=51 Identities=18% Similarity=0.214 Sum_probs=42.1
Q ss_pred HHHHHHHHHhh---CCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecccC
Q 012778 142 LTKKFINLIKH---AEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLK 192 (456)
Q Consensus 142 LTkKFI~Ll~~---apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sK 192 (456)
+...+.+.+-. .|+..+...++|+.|||+|=-|-.-++.|+.-|||+....
T Consensus 31 v~~~L~~~I~~g~l~pG~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~~~ 84 (237)
T 3c7j_A 31 IEEKLRNAIIDGSLPSGTALRQQELATLFGVSRMPVREALRQLEAQSLLRVETH 84 (237)
T ss_dssp HHHHHHHHHHTSSSCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHhCCCCCcCeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 44555554432 5888999999999999999999999999999999998743
No 178
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=38.44 E-value=92 Score=26.99 Aligned_cols=35 Identities=23% Similarity=0.411 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012778 210 ENASSLQAEVESLTIQERRLDEQIRIMQERLRDLS 244 (456)
Q Consensus 210 ~~~~~Lq~El~~L~~eE~~LDelI~~~~q~Lr~Lt 244 (456)
.++..|++|+++++...++|-+.-....+.+|+..
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav 38 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKIQEFRKAC 38 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999888766666666543
No 179
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=37.58 E-value=64 Score=26.27 Aligned_cols=76 Identities=13% Similarity=0.250 Sum_probs=37.8
Q ss_pred hhhcceeeehhhhHHhhhhccceecccCCeEEEeecCCCCC------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012778 165 DTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRP------GEADENASSLQAEVESLTIQERRLDEQIRIMQE 238 (456)
Q Consensus 165 ~~L~VqKRRIYDItNVLEGIGLIeK~sKN~i~W~G~d~s~~------~~~~~~~~~Lq~El~~L~~eE~~LDelI~~~~q 238 (456)
..|.-+++.+-++++=|+.+ .- ..+.|+=+|.-.... ..+..++..+..+++.|..+...+...+..++.
T Consensus 30 ~~l~~~~~e~~~~~~eL~~l---~~-d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~ 105 (117)
T 2zqm_A 30 QKVQLELTEAKKALDEIESL---PD-DAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTA 105 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHTS---CT-TCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcC---CC-CcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555544 32 334566566322110 012333445555556666666666666666666
Q ss_pred HHHhhh
Q 012778 239 RLRDLS 244 (456)
Q Consensus 239 ~Lr~Lt 244 (456)
.|+.+.
T Consensus 106 ~l~~~~ 111 (117)
T 2zqm_A 106 QIQSAL 111 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665553
No 180
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=37.40 E-value=63 Score=29.97 Aligned_cols=52 Identities=25% Similarity=0.309 Sum_probs=36.9
Q ss_pred CCCcHHHHHHHHHHHHhh-CCCCc---------------ccHHHHHhhhcc-eeeehhhhHHhhhhcccee
Q 012778 135 YDSSLGLLTKKFINLIKH-AEDGI---------------LDLNKAADTLEV-QKRRIYDITNVLEGIGLIE 188 (456)
Q Consensus 135 ~d~SLglLTkKFI~Ll~~-apdg~---------------idLn~aA~~L~V-qKRRIYDItNVLEGIGLIe 188 (456)
++.+...|-+.|..|.+. .||.. ..||+|=+.|.- .||+.||. -|.|+.+-+
T Consensus 55 ~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~--~l~G~~~~~ 123 (207)
T 3bvo_A 55 FRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL--KLHGIEIPE 123 (207)
T ss_dssp SCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH--HHTTCCCCS
T ss_pred CCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH--HhcCCCccc
Confidence 457889999999998753 55542 357777777775 78889998 455665543
No 181
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=37.06 E-value=25 Score=29.50 Aligned_cols=46 Identities=7% Similarity=0.084 Sum_probs=38.3
Q ss_pred HHHHHHhhCCCCcccHHHHHhhhc----ceeeehhhhHHhhhhccceeccc
Q 012778 145 KFINLIKHAEDGILDLNKAADTLE----VQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 145 KFI~Ll~~apdg~idLn~aA~~L~----VqKRRIYDItNVLEGIGLIeK~s 191 (456)
.++.++... .+.+...++++.|+ +.+=-+|-+++-||.-|+|+|..
T Consensus 13 ~vL~~L~~~-~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~ 62 (138)
T 2g9w_A 13 AVMDHLWSR-TEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIR 62 (138)
T ss_dssp HHHHHHHTC-SSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHhc-CCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 455666553 35689999999998 78889999999999999999874
No 182
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=36.65 E-value=2.2e+02 Score=25.74 Aligned_cols=109 Identities=21% Similarity=0.260 Sum_probs=63.9
Q ss_pred CCCCCCCcHHHHHHHHHHHHhh-CCCCc-------ccHHHHHhhhcc-eeeehhhhHHhhhhccceecccCCeEEEeecC
Q 012778 131 GPCRYDSSLGLLTKKFINLIKH-AEDGI-------LDLNKAADTLEV-QKRRIYDITNVLEGIGLIEKKLKNRIQWKGLD 201 (456)
Q Consensus 131 ~~~R~d~SLglLTkKFI~Ll~~-apdg~-------idLn~aA~~L~V-qKRRIYDItNVLEGIGLIeK~sKN~i~W~G~d 201 (456)
+..+++.+...|.+.|..|.+. .||.. ..||+|=+.|.= .+|+.||..= +.|+.+-.-.... +..
T Consensus 24 ~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~~Yd~~l-~~g~~~~~e~~~~-----~~~ 97 (181)
T 3uo3_A 24 KLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKL-LRNIDLTQEQTSN-----EVT 97 (181)
T ss_dssp CSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHHHHHHHH-HHCCCTTSHHHHH-----HHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHHHHHHHH-HhCCCcccccccc-----ccc
Confidence 4445788999999999998865 56643 468998888876 8999999731 1455544321000 000
Q ss_pred CCCCCchhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhhhc
Q 012778 202 VSRPGEADENASSLQAEVE------SLTIQERRLDEQIRIMQERLRDLSED 246 (456)
Q Consensus 202 ~s~~~~~~~~~~~Lq~El~------~L~~eE~~LDelI~~~~q~Lr~Lted 246 (456)
...+ ++-..+-.+.++|+ +|.....++++.|..|.++|....+.
T Consensus 98 ~~d~-~fLme~me~rE~leea~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~ 147 (181)
T 3uo3_A 98 TSDP-QLLLKVLDIHDELSQMDDEAGVKLLEKQNKERIQDIEAQLGQCYND 147 (181)
T ss_dssp HTCH-HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCH-HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0011 22222333344443 34455556677777777777776654
No 183
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=36.08 E-value=59 Score=26.56 Aligned_cols=39 Identities=21% Similarity=0.212 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 012778 208 ADENASSLQAEVESLTIQERRLDEQIRIMQERLRDLSED 246 (456)
Q Consensus 208 ~~~~~~~Lq~El~~L~~eE~~LDelI~~~~q~Lr~Lted 246 (456)
+...+..|+.||..|..+-+.+.-.|..++++-+++..|
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~d 63 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQ 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777777777777777777777777766444
No 184
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=35.29 E-value=19 Score=29.69 Aligned_cols=45 Identities=7% Similarity=0.053 Sum_probs=36.4
Q ss_pred HHHHHHhhCCCCcccHHHHHhhhcce----eeehhhhHHhhhhccceeccc
Q 012778 145 KFINLIKHAEDGILDLNKAADTLEVQ----KRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 145 KFI~Ll~~apdg~idLn~aA~~L~Vq----KRRIYDItNVLEGIGLIeK~s 191 (456)
.++.+|.. .+.+...++++.|+.. +=-+|-+++-||.-|+|+|..
T Consensus 39 ~VL~~L~~--~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~ 87 (99)
T 2k4b_A 39 IVMRVIWS--LGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp HHHHHHHH--HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHHh--CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEe
Confidence 45566654 4468999999999864 567999999999999999864
No 185
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=35.19 E-value=79 Score=23.78 Aligned_cols=34 Identities=18% Similarity=0.368 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012778 211 NASSLQAEVESLTIQERRLDEQIRIMQERLRDLS 244 (456)
Q Consensus 211 ~~~~Lq~El~~L~~eE~~LDelI~~~~q~Lr~Lt 244 (456)
.+..|+.+++.|..+-..|...|..+++++..|.
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888888888888888888777664
No 186
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=35.12 E-value=61 Score=27.66 Aligned_cols=81 Identities=15% Similarity=0.174 Sum_probs=0.0
Q ss_pred ccHHHHHhhhcceeeehhhhHHhhhhcccee--cccCCeEEEeecCCCCCCchhHHHHHHH------HHHHHHH------
Q 012778 158 LDLNKAADTLEVQKRRIYDITNVLEGIGLIE--KKLKNRIQWKGLDVSRPGEADENASSLQ------AEVESLT------ 223 (456)
Q Consensus 158 idLn~aA~~L~VqKRRIYDItNVLEGIGLIe--K~sKN~i~W~G~d~s~~~~~~~~~~~Lq------~El~~L~------ 223 (456)
+.+.++|+.+||..+-|- -.|-.||+. +...|.+++-..+.. ..-..+..|+ +|+..+-
T Consensus 1 ~~I~e~A~~~gvs~~tLR----~ye~~Gll~p~~r~~~g~R~Y~~~dl---~~l~~I~~lr~~G~sl~eI~~~l~~~~~~ 73 (135)
T 1q06_A 1 MNISDVAKITGLTSKAIR----FYEEKGLVTPPMRSENGYRTYTQQHL---NELTLLRQARQVGFNLEESGELVNLFNDP 73 (135)
T ss_dssp CCHHHHHHHHTCCHHHHH----HHHHTTCSCCCEECTTSCEECCHHHH---HHHHHHHHHHHTTCCHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHCcCHHHHH----HHHHCCCCCCCccCCCCCeeeCHHHH---HHHHHHHHHHHCCCCHHHHHHHHHhhhcC
Q ss_pred -----HHHHHHHHHHHHHHHHHHhhhh
Q 012778 224 -----IQERRLDEQIRIMQERLRDLSE 245 (456)
Q Consensus 224 -----~eE~~LDelI~~~~q~Lr~Lte 245 (456)
.....|++++..+.+++..|..
T Consensus 74 ~~~~~~~~~~l~~~~~~l~~~i~~L~~ 100 (135)
T 1q06_A 74 QRHSADVKRRTLEKVAEIERHIEELQS 100 (135)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHH
No 187
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=34.58 E-value=33 Score=28.81 Aligned_cols=46 Identities=15% Similarity=0.295 Sum_probs=39.3
Q ss_pred HHHHHhhCCCCcccHHHHHhhh-----cceeeehhhhHHhhhhccceecccC
Q 012778 146 FINLIKHAEDGILDLNKAADTL-----EVQKRRIYDITNVLEGIGLIEKKLK 192 (456)
Q Consensus 146 FI~Ll~~apdg~idLn~aA~~L-----~VqKRRIYDItNVLEGIGLIeK~sK 192 (456)
.+++|.++ ++.+...++.+.| ++.+=-+|-.++.|+..|||.|..-
T Consensus 16 Il~~l~~~-~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~ 66 (131)
T 2o03_A 16 ISTLLETL-DDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHT 66 (131)
T ss_dssp HHHHHHHC-CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEEC
T ss_pred HHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEe
Confidence 56667654 6689999999999 7899999999999999999998753
No 188
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=34.44 E-value=28 Score=30.89 Aligned_cols=46 Identities=13% Similarity=0.243 Sum_probs=37.6
Q ss_pred HHHHHHh-hCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 145 KFINLIK-HAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 145 KFI~Ll~-~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
+.+-+|- ...++.+.+.++|+.+++.++-+..|+..|..-|||+-.
T Consensus 31 r~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~ 77 (159)
T 3lwf_A 31 TITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSI 77 (159)
T ss_dssp HHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEe
Confidence 3444443 334567999999999999999999999999999999854
No 189
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=33.90 E-value=20 Score=34.36 Aligned_cols=44 Identities=16% Similarity=0.260 Sum_probs=36.6
Q ss_pred HHHHHhhCCCCcccHHHHHhhhcc---eeeehhhhHHhhhhccceecc
Q 012778 146 FINLIKHAEDGILDLNKAADTLEV---QKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 146 FI~Ll~~apdg~idLn~aA~~L~V---qKRRIYDItNVLEGIGLIeK~ 190 (456)
.++.|... ++.+.+.++|+++++ ..++++-+..+|.++|++++.
T Consensus 35 if~~L~~~-~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~ 81 (358)
T 1zg3_A 35 IADAIHNH-GKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKT 81 (358)
T ss_dssp HHHHHHHH-TSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEE
T ss_pred hHhHHhhc-CCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEe
Confidence 44555432 457999999999999 588999999999999999987
No 190
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=33.76 E-value=31 Score=31.38 Aligned_cols=39 Identities=15% Similarity=0.174 Sum_probs=36.5
Q ss_pred CCCcccHHHHHhhhcceeeehhhhHHhhhhccceecccC
Q 012778 154 EDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLK 192 (456)
Q Consensus 154 pdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sK 192 (456)
.++.+...++|+.|+|.+-.+-.+++-||.-|||++...
T Consensus 17 ~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~~ 55 (214)
T 3hrs_A 17 RHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDKK 55 (214)
T ss_dssp SCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred cCCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEecC
Confidence 578899999999999999999999999999999999854
No 191
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=33.74 E-value=30 Score=29.24 Aligned_cols=47 Identities=19% Similarity=0.390 Sum_probs=39.1
Q ss_pred HHHHHHhhCCCCcccHHHHHhhh-----cceeeehhhhHHhhhhccceeccc
Q 012778 145 KFINLIKHAEDGILDLNKAADTL-----EVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 145 KFI~Ll~~apdg~idLn~aA~~L-----~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
..+++|.++.++.+...++.+.| .+.+=-+|-.++.|+..|||.|..
T Consensus 22 ~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 73 (136)
T 1mzb_A 22 KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHN 73 (136)
T ss_dssp HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEE
Confidence 35667766554789999999999 788889999999999999999875
No 192
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=33.72 E-value=31 Score=28.63 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012778 212 ASSLQAEVESLTIQERRLDEQIRIMQERLRDL 243 (456)
Q Consensus 212 ~~~Lq~El~~L~~eE~~LDelI~~~~q~Lr~L 243 (456)
...|+++++.|+.+...|+..|..+..+|++.
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~ 34 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDALAKLKNR 34 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 45788888888888888888888887776643
No 193
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=33.72 E-value=38 Score=28.21 Aligned_cols=55 Identities=15% Similarity=0.205 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecccCCeE
Q 012778 139 LGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRI 195 (456)
Q Consensus 139 LglLTkKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN~i 195 (456)
+..+...+.++++. ++.+++.++-+.||++|+..-=|..-|..+|+..|++-.++
T Consensus 64 ~~~~~~~l~~~~~~--~~~it~ae~Rd~lg~sRK~ai~lLE~~Dr~g~TrR~gd~R~ 118 (121)
T 2pjp_A 64 IVEFANMIRDLDQE--CGSTCAADFRDRLGVGRKLAIQILEYFDRIGFTRRRGNDHL 118 (121)
T ss_dssp HHHHHHHHHHHHHH--HSSEEHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEETTEEE
T ss_pred HHHHHHHHHHHHHH--CCCccHHHHHHHHCCcHHHHHHHHHHHhhcCCeEeeCCEee
Confidence 33444455555544 48899999999999999999999999999999998865444
No 194
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=33.46 E-value=18 Score=27.09 Aligned_cols=40 Identities=15% Similarity=0.224 Sum_probs=29.2
Q ss_pred cccHHHHHhhhcceeeehhhhHHhhhhccceecccC--CeEEEee
Q 012778 157 ILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLK--NRIQWKG 199 (456)
Q Consensus 157 ~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sK--N~i~W~G 199 (456)
.++..++|+.|+|+++-||..+.- |+ -+.+... .++.|.-
T Consensus 2 ~lt~~e~a~~LgvS~~Tl~rw~~~--G~-P~~~~~g~~~~~~y~~ 43 (68)
T 1j9i_A 2 EVNKKQLADIFGASIRTIQNWQEQ--GM-PVLRGGGKGNEVLYDS 43 (68)
T ss_dssp EEEHHHHHHHTTCCHHHHHHHTTT--TC-CCSSCCCSSSCCEEEH
T ss_pred ccCHHHHHHHHCcCHHHHHHHHHC--CC-CeEeeCCCcceEEECH
Confidence 468899999999999999999874 65 3333333 3666664
No 195
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=33.31 E-value=48 Score=28.30 Aligned_cols=48 Identities=13% Similarity=0.245 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 141 LLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 141 lLTkKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
...-+.+-+|-..+++ .+.++|+.+++..+-+..|+.-|.--|||+-.
T Consensus 9 ~yAl~~L~~La~~~~~--s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~ 56 (145)
T 1xd7_A 9 AVAIHILSLISMDEKT--SSEIIADSVNTNPVVVRRMISLLKKADILTSR 56 (145)
T ss_dssp HHHHHHHHHHHTCSCC--CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC
T ss_pred HHHHHHHHHHHhCCCC--CHHHHHHHHCcCHHHHHHHHHHHHHCCceEee
Confidence 3333444445444553 99999999999999999999999999999754
No 196
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=33.12 E-value=1.8e+02 Score=23.16 Aligned_cols=72 Identities=19% Similarity=0.194 Sum_probs=33.6
Q ss_pred hhcceeeehhhhHHhhhhccceecccCCeEEEeecCCCCCCch-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012778 166 TLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEA-------DENASSLQAEVESLTIQERRLDEQIRIMQE 238 (456)
Q Consensus 166 ~L~VqKRRIYDItNVLEGIGLIeK~sKN~i~W~G~d~s~~~~~-------~~~~~~Lq~El~~L~~eE~~LDelI~~~~q 238 (456)
.|.-+++.+-++.+=|+.+ .- ....|+=+|.-... ... ..++..+..+++.|..+...+...+..++.
T Consensus 26 ~l~~~~~e~~~~~~EL~~l---~~-d~~vy~~iG~vfv~-~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~ 100 (107)
T 1fxk_A 26 TVEMQINETQKALEELSRA---AD-DAEVYKSSGNILIR-VAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHS---CT-TCCEEEEETTEEEE-ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC---CC-CchHHHHHhHHHHh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544 32 23355556632211 122 233444444555555555555555555555
Q ss_pred HHHh
Q 012778 239 RLRD 242 (456)
Q Consensus 239 ~Lr~ 242 (456)
.|+.
T Consensus 101 ~l~~ 104 (107)
T 1fxk_A 101 NIQE 104 (107)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 5544
No 197
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=33.03 E-value=23 Score=31.87 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=39.9
Q ss_pred HHHHHHHhh---CCCCcc-cHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 144 KKFINLIKH---AEDGIL-DLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 144 kKFI~Ll~~---apdg~i-dLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
..+.+.+.. .|+..+ .-.++|+.|||+|=-+=..+..|+.-|||++..
T Consensus 14 ~~l~~~I~~g~l~pG~~LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~~~~ 65 (239)
T 1hw1_A 14 EYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQH 65 (239)
T ss_dssp HHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEec
Confidence 344444433 478889 899999999999999999999999999999764
No 198
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=32.94 E-value=82 Score=23.78 Aligned_cols=34 Identities=21% Similarity=0.413 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012778 211 NASSLQAEVESLTIQERRLDEQIRIMQERLRDLS 244 (456)
Q Consensus 211 ~~~~Lq~El~~L~~eE~~LDelI~~~~q~Lr~Lt 244 (456)
.+..|+.+++.|..+-..|...|..+++++..|.
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888888888888888888888877764
No 199
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=32.92 E-value=1.9e+02 Score=28.88 Aligned_cols=99 Identities=16% Similarity=0.150 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc-ccccccchhhhccCCCCCCCeEEEeeCCC-CCeEEecC
Q 012778 209 DENASSLQAEVESLTIQERRLDEQIRIMQERLRDLSEDENN-QKWLFVTEDDIKSLPCFQNETLIAIKAPH-GTTLEVPD 286 (456)
Q Consensus 209 ~~~~~~Lq~El~~L~~eE~~LDelI~~~~q~Lr~Lted~~n-~~~aYVT~eDI~~l~~f~~qTvIAIKAP~-gT~LEVPd 286 (456)
+.++..|+..++.|+.+-+.|.++|..+...++....+... ..-.+-++.||.... ....-|.-|+-+. ...++|-=
T Consensus 17 ~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~~~~~~~~~~~~~~~~~sC~~i~~~g-~~~SGvY~I~p~~~~~pf~VyC 95 (319)
T 1fzc_C 17 DSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDTVQIHDITGKDCQDIANKG-AKQSGLYFIKPLKANQQFLVYC 95 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCEESCCCCSCCBSSHHHHHTTT-CCCCEEEEECCTTCSSCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCHHHHHhcC-CCCCeEEEEecCCCCCcEEEEE
Confidence 44566666666666655555555555554444332211111 112345677776532 2345566666332 23344431
Q ss_pred CCcccCCCCCceEEEEecCCCceEE
Q 012778 287 PDEAVDYPQRRYRIVLRSTMGPIDV 311 (456)
Q Consensus 287 Pde~~~~~qr~YqI~LkS~~GPIdV 311 (456)
| |+....-+.|+.|=..|.+|.
T Consensus 96 -D--m~t~ggGWtviqrR~dGsv~F 117 (319)
T 1fzc_C 96 -E--IDGSGNGWTVFQKRLDGSVDF 117 (319)
T ss_dssp -E--ECTTSCEEEEEEEESSSCSCC
T ss_pred -e--eecCCCCEEEEEEecCCCcce
Confidence 1 111123466666666666553
No 200
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=32.92 E-value=88 Score=23.94 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012778 212 ASSLQAEVESLTIQERRLDEQIRIMQERLRDL 243 (456)
Q Consensus 212 ~~~Lq~El~~L~~eE~~LDelI~~~~q~Lr~L 243 (456)
...|..+++.|..+-..|...|..++..+..|
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777777777777665554
No 201
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=32.62 E-value=21 Score=34.43 Aligned_cols=34 Identities=12% Similarity=0.242 Sum_probs=32.0
Q ss_pred cccHHHHHhhhcc------eeeehhhhHHhhhhccceecc
Q 012778 157 ILDLNKAADTLEV------QKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 157 ~idLn~aA~~L~V------qKRRIYDItNVLEGIGLIeK~ 190 (456)
.+.+.++|+++++ ..++++-+..+|.++|++++.
T Consensus 62 ~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 101 (372)
T 1fp1_D 62 FMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTST 101 (372)
T ss_dssp CBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCCceEec
Confidence 3999999999999 789999999999999999987
No 202
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=32.14 E-value=26 Score=33.11 Aligned_cols=39 Identities=13% Similarity=0.177 Sum_probs=35.5
Q ss_pred cccHHHHHhhhcceeeehhhhHHhhhhccceecccCCeEE
Q 012778 157 ILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQ 196 (456)
Q Consensus 157 ~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN~i~ 196 (456)
.+.+.++|+++++..|.++-+..+|.++|++++.. +.|.
T Consensus 56 ~~t~~elA~~~~~~~~~l~rlLr~L~~~gll~~~~-~~y~ 94 (352)
T 3mcz_A 56 GRTPAEVAASFGMVEGKAAILLHALAALGLLTKEG-DAFR 94 (352)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEE
T ss_pred CCCHHHHHHHhCcChHHHHHHHHHHHHCCCeEecC-Ceee
Confidence 89999999999999999999999999999999875 4444
No 203
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=31.99 E-value=28 Score=31.69 Aligned_cols=38 Identities=11% Similarity=0.031 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHH
Q 012778 142 LTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITN 179 (456)
Q Consensus 142 LTkKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItN 179 (456)
+..+|++++.+.....+.|.++|+.+++++|.+.-+..
T Consensus 170 ~~~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk 207 (276)
T 3gbg_A 170 AMEKISCLVKSDITRNWRWADICGELRTNRMILKKELE 207 (276)
T ss_dssp HHHHHHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 56789999999888899999999999999999988764
No 204
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=31.70 E-value=18 Score=32.76 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=23.4
Q ss_pred CCCcccHHHHHhhhcceeeehhhhHH
Q 012778 154 EDGILDLNKAADTLEVQKRRIYDITN 179 (456)
Q Consensus 154 pdg~idLn~aA~~L~VqKRRIYDItN 179 (456)
.+..+.+.++|+.|+|.+.|+|+.++
T Consensus 28 ~~~~LTv~EVAe~LgVs~srV~~LIr 53 (148)
T 2kfs_A 28 DEPTYDLPRVAELLGVPVSKVAQQLR 53 (148)
T ss_dssp TSCEEEHHHHHHHHTCCHHHHHHHHH
T ss_pred cCceEcHHHHHHHhCCCHHHHHHHHH
Confidence 34789999999999999999999875
No 205
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=31.63 E-value=30 Score=31.78 Aligned_cols=40 Identities=15% Similarity=0.216 Sum_probs=37.0
Q ss_pred CCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecccC
Q 012778 153 AEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLK 192 (456)
Q Consensus 153 apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sK 192 (456)
.|+..+.-.++|+.|+|+|=-|=+.+..|+.-|||+....
T Consensus 47 ~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~ 86 (239)
T 2hs5_A 47 RPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAHELN 86 (239)
T ss_dssp CTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCcCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 4788899999999999999999999999999999997754
No 206
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=31.53 E-value=1.7e+02 Score=26.56 Aligned_cols=38 Identities=16% Similarity=0.066 Sum_probs=33.3
Q ss_pred CCcccHHHHHhhhcceeeehhhhHHhhhhccceecccC
Q 012778 155 DGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLK 192 (456)
Q Consensus 155 dg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sK 192 (456)
+......++|+.|+|.+--+-.+++-||.-|||++...
T Consensus 22 ~~~~~~~~la~~l~vs~~tvs~~l~~Le~~GlV~r~~~ 59 (226)
T 2qq9_A 22 GVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASD 59 (226)
T ss_dssp TCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTT
T ss_pred CCCccHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 34446699999999999999999999999999999743
No 207
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=31.05 E-value=84 Score=25.20 Aligned_cols=31 Identities=23% Similarity=0.528 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012778 214 SLQAEVESLTIQERRLDEQIRIMQERLRDLS 244 (456)
Q Consensus 214 ~Lq~El~~L~~eE~~LDelI~~~~q~Lr~Lt 244 (456)
.|...++.|...-..|+..+..++..|.++.
T Consensus 69 ~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 69 ELQEKLETLQLREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555566666666666665553
No 208
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=30.86 E-value=89 Score=25.41 Aligned_cols=34 Identities=24% Similarity=0.531 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012778 212 ASSLQAEVESLTIQERRLDEQIRIMQERLRDLSE 245 (456)
Q Consensus 212 ~~~Lq~El~~L~~eE~~LDelI~~~~q~Lr~Lte 245 (456)
...|...++.|...-..|+..+..++.+|.++..
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~ 105 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKLKELTA 105 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666667777777777777777777776643
No 209
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=30.58 E-value=26 Score=29.46 Aligned_cols=52 Identities=17% Similarity=0.221 Sum_probs=40.8
Q ss_pred HHHHHHHHHhh---CCCCcc-cHHHHHhhhcceeeehhhhHHhhhhccceecccCC
Q 012778 142 LTKKFINLIKH---AEDGIL-DLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKN 193 (456)
Q Consensus 142 LTkKFI~Ll~~---apdg~i-dLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN 193 (456)
+...+...+.. .++..+ ...++|+.|+|+|--+-..++.|+.-|+|++....
T Consensus 16 i~~~l~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~~~ 71 (126)
T 3ic7_A 16 IADRICDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNKRGI 71 (126)
T ss_dssp HHHHHHHHHHTTSSCBTSEECCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEETTT
T ss_pred HHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEcCC
Confidence 44455555533 467778 89999999999999999999999999999987543
No 210
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=30.41 E-value=13 Score=33.42 Aligned_cols=36 Identities=11% Similarity=0.108 Sum_probs=33.6
Q ss_pred CcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 156 GILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 156 g~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
+.+...++|+.|++.+=-+.-+++.||.-|||+|..
T Consensus 61 ~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~ 96 (207)
T 2fxa_A 61 NGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSK 96 (207)
T ss_dssp TSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 458999999999999999999999999999999874
No 211
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=29.94 E-value=27 Score=32.05 Aligned_cols=42 Identities=14% Similarity=0.218 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhh
Q 012778 142 LTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEG 183 (456)
Q Consensus 142 LTkKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEG 183 (456)
+..++++++.+..+..++|.++|+.+++++|.|.-++.-.-|
T Consensus 4 ~~~~~~~~i~~~~~~~~~~~~la~~~~~s~~~l~r~f~~~~g 45 (292)
T 1d5y_A 4 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTG 45 (292)
T ss_dssp HHHHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHC
Confidence 567889999988899999999999999999999888554433
No 212
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=29.91 E-value=72 Score=25.60 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=29.3
Q ss_pred CcHHHHHHHHHH-HHhhCCCCcccHHHHHhhhcceeeehhhhHH
Q 012778 137 SSLGLLTKKFIN-LIKHAEDGILDLNKAADTLEVQKRRIYDITN 179 (456)
Q Consensus 137 ~SLglLTkKFI~-Ll~~apdg~idLn~aA~~L~VqKRRIYDItN 179 (456)
..|..+-+++|. .|+.. +| ++.+||+.|||.|+.||.-+.
T Consensus 36 ~~l~~~Er~~I~~aL~~~-~G--N~s~AA~~LGISR~TLyrKLk 76 (81)
T 1umq_A 36 MSADRVRWEHIQRIYEMC-DR--NVSETARRLNMHRRTLQRILA 76 (81)
T ss_dssp SCHHHHHHHHHHHHHHHT-TS--CHHHHHHHHTSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHh-CC--CHHHHHHHhCCCHHHHHHHHH
Confidence 457777777776 44443 33 477999999999999997654
No 213
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=29.88 E-value=19 Score=37.18 Aligned_cols=28 Identities=14% Similarity=0.367 Sum_probs=14.6
Q ss_pred eeecCCCCCCCC-----------CeeeecCCCCcccccc
Q 012778 382 MKIVPSEVDSDA-----------DYWLLSDAGVSITDIW 409 (456)
Q Consensus 382 ~ki~psd~~~d~-----------dywl~sd~~vsitd~w 409 (456)
|+..--|-|.|. -+|+..=....+.-.|
T Consensus 310 ~~FST~DrDnD~~~~nCA~~~~GGWWy~~C~~sNLNG~Y 348 (409)
T 1m1j_C 310 MRFSTFDNDNDNFEGNCAEQDGSGWWMNRCHAGHLNGPY 348 (409)
T ss_dssp CCCBBTTBCCSSSSSCHHHHHTSCBCCSSSCSEETTSCC
T ss_pred ceeeccCcCCCCCCCCccccCCCCCcCCCCCCCCCCccc
Confidence 455555655553 2676643334555555
No 214
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=29.82 E-value=80 Score=25.70 Aligned_cols=36 Identities=14% Similarity=0.210 Sum_probs=23.7
Q ss_pred ccHHHHHhhhcceeeehhhhHHhhhhcccee--cccCCeEEE
Q 012778 158 LDLNKAADTLEVQKRRIYDITNVLEGIGLIE--KKLKNRIQW 197 (456)
Q Consensus 158 idLn~aA~~L~VqKRRIYDItNVLEGIGLIe--K~sKN~i~W 197 (456)
+.+.++|+.+||+.+-|-=. |..||+. +...|.+++
T Consensus 3 ~~i~e~A~~~gvs~~tLR~y----e~~Gll~p~~~~~~g~R~ 40 (109)
T 1r8d_A 3 YQVKQVAEISGVSIRTLHHY----DNIELLNPSALTDAGYRL 40 (109)
T ss_dssp BCHHHHHHHHSCCHHHHHHH----HHTTSSCCSEECTTCCEE
T ss_pred ccHHHHHHHHCcCHHHHHHH----HHCCCCCCCeECCCCCee
Confidence 57889999999988876322 4467764 323455554
No 215
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=29.81 E-value=41 Score=31.69 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=38.1
Q ss_pred HHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 146 FINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 146 FI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
++..+....++.+...++|+.|++.+--|-=+++-||.-|+|+|.
T Consensus 39 vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~G~i~R~ 83 (250)
T 1p4x_A 39 LLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKV 83 (250)
T ss_dssp HHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEE
T ss_pred HHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEec
Confidence 344444444567899999999999999999999999999999987
No 216
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=29.76 E-value=44 Score=31.88 Aligned_cols=47 Identities=11% Similarity=0.172 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc-ccccccc
Q 012778 209 DENASSLQAEVESLTIQERRLDEQIRIMQERLRDLSEDENN-QKWLFVT 256 (456)
Q Consensus 209 ~~~~~~Lq~El~~L~~eE~~LDelI~~~~q~Lr~Lted~~n-~~~aYVT 256 (456)
.++.++|++|+..|+.+..+++++..+ .++|+.|.+-... ..|-|+.
T Consensus 25 ~~eN~~Lk~e~~~l~~~~~~~~~l~~E-n~rLr~lL~~~~~~~~~~~i~ 72 (255)
T 2j5u_A 25 YTENQHLKERLEELAQLESEVADLKKE-NKDLKESLDITDSIRDYDPLN 72 (255)
T ss_dssp -CTTTTHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTTCCSCTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCccccccCceEE
Confidence 344568889999998888888887665 4567777665443 3444443
No 217
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=29.59 E-value=88 Score=24.64 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012778 210 ENASSLQAEVESLTIQERRLDEQIRIMQERLRDLS 244 (456)
Q Consensus 210 ~~~~~Lq~El~~L~~eE~~LDelI~~~~q~Lr~Lt 244 (456)
+.+..|+.++..|..+-..|.+.+..++++|..|.
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34778888888888888888888888888887663
No 218
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=29.11 E-value=47 Score=27.60 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=35.7
Q ss_pred CCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 153 AEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 153 apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
++++.+.+.++|+.+++.+=++-=.+..||.-|||++.
T Consensus 32 ~~g~~~s~~eLa~~l~l~~stLsR~l~rLe~~GLV~r~ 69 (96)
T 2obp_A 32 NGATPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLADVS 69 (96)
T ss_dssp TTCCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCcCHHHHHHHhCCchhhHHHHHHHHHHCCCEEee
Confidence 47889999999999999999999999999999999975
No 219
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=28.68 E-value=49 Score=30.41 Aligned_cols=54 Identities=19% Similarity=0.278 Sum_probs=40.0
Q ss_pred HHHHHHHHHH-HHhhCCCCcccHHHHHhhhcceeeehhhhHHh-hhhccceecccC
Q 012778 139 LGLLTKKFIN-LIKHAEDGILDLNKAADTLEVQKRRIYDITNV-LEGIGLIEKKLK 192 (456)
Q Consensus 139 LglLTkKFI~-Ll~~apdg~idLn~aA~~L~VqKRRIYDItNV-LEGIGLIeK~sK 192 (456)
|...-++++. +++...+..+.+..+|+.||+.+..+|..+.- |...|+|.+..+
T Consensus 245 l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~ 300 (324)
T 1hqc_A 245 LEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPR 300 (324)
T ss_dssp CCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETT
T ss_pred CCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCc
Confidence 4444555665 44555666789999999999999999995544 777899987653
No 220
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=28.07 E-value=35 Score=33.01 Aligned_cols=45 Identities=16% Similarity=0.245 Sum_probs=37.8
Q ss_pred HHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 146 FINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 146 FI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
..++|.+. ++.+++.++|+++++..+.++-+..+|.++|++++..
T Consensus 33 lfd~L~~~-~~p~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~ 77 (353)
T 4a6d_A 33 VFDLLAEA-PGPLDVAAVAAGVRASAHGTELLLDICVSLKLLKVET 77 (353)
T ss_dssp HHHHHHHS-SSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHhcC-CCCCCHHHHHHhhCcCHHHHHHHHHHHHHCCCEEEec
Confidence 44555443 4689999999999999999999999999999998654
No 221
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=27.91 E-value=80 Score=27.32 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012778 210 ENASSLQAEVESLTIQERRLDEQIRIMQERLRDL 243 (456)
Q Consensus 210 ~~~~~Lq~El~~L~~eE~~LDelI~~~~q~Lr~L 243 (456)
+++..|.++++.|+...+.|+..|..+++.+...
T Consensus 88 ~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~ 121 (142)
T 3gp4_A 88 KQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPA 121 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667777777777777777776655443
No 222
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=27.80 E-value=35 Score=30.94 Aligned_cols=37 Identities=24% Similarity=0.330 Sum_probs=34.4
Q ss_pred CCCCcc-cHHHHHhhhcceeeehhhhHHhhhhccceec
Q 012778 153 AEDGIL-DLNKAADTLEVQKRRIYDITNVLEGIGLIEK 189 (456)
Q Consensus 153 apdg~i-dLn~aA~~L~VqKRRIYDItNVLEGIGLIeK 189 (456)
.|+..+ .-.++|+.|||+|=-+=+.+..|+.-|||+.
T Consensus 23 ~pG~~LpsE~~La~~lgVSRtpVREAL~~L~~~GlV~~ 60 (239)
T 2di3_A 23 KIGDHLPSERALSETLGVSRSSLREALRVLEALGTIST 60 (239)
T ss_dssp CTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC
T ss_pred CCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEe
Confidence 477788 5889999999999999999999999999997
No 223
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=27.58 E-value=55 Score=26.57 Aligned_cols=45 Identities=13% Similarity=0.268 Sum_probs=32.2
Q ss_pred HHHHHhhCCCCcccH-HHHHhhhcceeeehhhhHHhhhhccceecc
Q 012778 146 FINLIKHAEDGILDL-NKAADTLEVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 146 FI~Ll~~apdg~idL-n~aA~~L~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
.+.+|...+..-.+| ..+++.+++..--||-++.-||.-|+|++.
T Consensus 14 IL~~L~~~~~~gyel~~~l~~~~~i~~~tly~~L~~Le~~GlI~~~ 59 (108)
T 3l7w_A 14 ILAIVSKHDSYGYDISQTIKLIASIKESTLYPILKKLEKAGYLSTY 59 (108)
T ss_dssp HHHHHHHSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHcCCCcHHHHHHHHHHHhCCCcChHHHHHHHHHHCCCeEEE
Confidence 444555544333344 234455789999999999999999999986
No 224
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=27.56 E-value=23 Score=30.91 Aligned_cols=43 Identities=16% Similarity=0.175 Sum_probs=34.6
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCCcccHHHHHhhhcceeeehhh
Q 012778 134 RYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYD 176 (456)
Q Consensus 134 R~d~SLglLTkKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYD 176 (456)
|.+..-..|....++++.+..-..+.+.++|++.||.|.-||-
T Consensus 40 r~~~~r~~Il~aA~~l~~~~G~~~~tv~~IA~~AGvs~~t~Y~ 82 (229)
T 3bni_A 40 RSAERLTRILDACADLLDEVGYDALSTRAVALRADVPIGSVYR 82 (229)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcChhhccHHHHHHHHCCCchhHHH
Confidence 3344445677888888888766779999999999999999984
No 225
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=27.47 E-value=1.2e+02 Score=27.68 Aligned_cols=19 Identities=11% Similarity=0.344 Sum_probs=16.1
Q ss_pred EEEeeCCCCCeEEecCCCc
Q 012778 271 LIAIKAPHGTTLEVPDPDE 289 (456)
Q Consensus 271 vIAIKAP~gT~LEVPdPde 289 (456)
.|.|+.-+.|.|+|-..++
T Consensus 66 FIlV~T~k~t~I~ceISeD 84 (155)
T 2aze_A 66 FIIVNTSKKTVIDCSISND 84 (155)
T ss_dssp CEEEEEESSCCEEEEECTT
T ss_pred EEEEEcCCCCEEEEEEecC
Confidence 6899999999999987654
No 226
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=27.27 E-value=57 Score=30.19 Aligned_cols=50 Identities=16% Similarity=0.197 Sum_probs=40.6
Q ss_pred HHHHHHHHHhh---CCCCcc-cHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 142 LTKKFINLIKH---AEDGIL-DLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 142 LTkKFI~Ll~~---apdg~i-dLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
+...+.+.+.. .++..+ ...++|+.|+|+|=-+-..++.|+.-|+|.+..
T Consensus 15 i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~ 68 (243)
T 2wv0_A 15 IMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLK 68 (243)
T ss_dssp HHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECT
T ss_pred HHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEeC
Confidence 33445555544 467788 899999999999999999999999999999763
No 227
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=27.13 E-value=35 Score=33.93 Aligned_cols=37 Identities=11% Similarity=0.104 Sum_probs=32.6
Q ss_pred CcccHHHHHhhhcceeeehhhhHHhhhhccceecccC
Q 012778 156 GILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLK 192 (456)
Q Consensus 156 g~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sK 192 (456)
..+.+..+++.++|+++-+.-.++-|+..|+|++.++
T Consensus 310 p~~t~~~~~~~~gvS~~Ta~r~L~~L~e~GiL~~~~~ 346 (373)
T 2qc0_A 310 PYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQS 346 (373)
T ss_dssp SEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC--
T ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHHCCcEEEecC
Confidence 4678889999999999999999999999999998753
No 228
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=26.93 E-value=39 Score=28.26 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=34.1
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCCcccHHHHHhhhcceeeehh
Q 012778 134 RYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIY 175 (456)
Q Consensus 134 R~d~SLglLTkKFI~Ll~~apdg~idLn~aA~~L~VqKRRIY 175 (456)
|.+..=..|...+++++.+..-.-+.+.++|+..||.|.-||
T Consensus 28 ~~~~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y 69 (218)
T 3dcf_A 28 TGNDRRTQIIKVATELFREKGYYATSLDDIADRIGFTKPAIY 69 (218)
T ss_dssp --CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHHH
T ss_pred CccchHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCHHHHH
Confidence 344445677788999998876678999999999999999999
No 229
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=26.83 E-value=53 Score=30.33 Aligned_cols=51 Identities=14% Similarity=0.230 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhh---CCCCcc-cHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 141 LLTKKFINLIKH---AEDGIL-DLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 141 lLTkKFI~Ll~~---apdg~i-dLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
.+...+.+.+.. .++..+ ...++|++++|+|=-+-..++.|+.-|+|++..
T Consensus 13 ~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~ 67 (236)
T 3edp_A 13 VIASKIKDSINRDEYKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRKN 67 (236)
T ss_dssp HHHHHHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC
Confidence 355566666654 467778 899999999999999999999999999999864
No 230
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=26.83 E-value=12 Score=29.44 Aligned_cols=30 Identities=10% Similarity=0.010 Sum_probs=25.4
Q ss_pred cccHHHHHhhhcceeeehhhhHHhhhhccc
Q 012778 157 ILDLNKAADTLEVQKRRIYDITNVLEGIGL 186 (456)
Q Consensus 157 ~idLn~aA~~L~VqKRRIYDItNVLEGIGL 186 (456)
-..+.++|..+||.+.-||-++.-+..-|.
T Consensus 23 g~s~~~ia~~~gIs~~tl~rW~~~~~~~g~ 52 (97)
T 2jn6_A 23 GASLQQIANDLGINRVTLKNWIIKYGSNHN 52 (97)
T ss_dssp GSCHHHHHHHHTSCHHHHHHHHHHHCCCST
T ss_pred CChHHHHHHHHCcCHHHHHHHHHHHhhcCc
Confidence 368999999999999999999987766444
No 231
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=26.82 E-value=1e+02 Score=25.53 Aligned_cols=34 Identities=18% Similarity=0.317 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 012778 213 SSLQAEVESLTIQERRLDEQIRIMQERLRDLSED 246 (456)
Q Consensus 213 ~~Lq~El~~L~~eE~~LDelI~~~~q~Lr~Lted 246 (456)
..|.+||..|..++..||..|..++..++.|-..
T Consensus 21 ~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~e 54 (96)
T 3q8t_A 21 ERLIQELEDVEKNRKVVAENLEKVQAEAERLDQE 54 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhH
Confidence 4556778888899999999999999888887554
No 232
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=26.52 E-value=45 Score=26.75 Aligned_cols=45 Identities=13% Similarity=0.168 Sum_probs=37.2
Q ss_pred HHHHHHhhCCCCcccHHHHHhhhcc----eeeehhhhHHhhhhccceeccc
Q 012778 145 KFINLIKHAEDGILDLNKAADTLEV----QKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 145 KFI~Ll~~apdg~idLn~aA~~L~V----qKRRIYDItNVLEGIGLIeK~s 191 (456)
.++.++... +.+...++|+.|++ .+=-++-+++-||.-|+|+|..
T Consensus 14 ~vL~~L~~~--~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 14 DVMNIIWDK--KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp HHHHHHHHS--SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHhc--CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEe
Confidence 456666553 45899999999985 6888999999999999999875
No 233
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=26.35 E-value=41 Score=32.67 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=38.3
Q ss_pred HHHHHhhCCCCcccHHHHHhhhcc--eee---ehhhhHHhhhhccceecc
Q 012778 146 FINLIKHAEDGILDLNKAADTLEV--QKR---RIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 146 FI~Ll~~apdg~idLn~aA~~L~V--qKR---RIYDItNVLEGIGLIeK~ 190 (456)
..+.|..+.++.+.+.++|+++++ ..| .++-|..+|-++|++++.
T Consensus 45 ifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~~ 94 (364)
T 3p9c_A 45 LLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCL 94 (364)
T ss_dssp HHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred hHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEEe
Confidence 556665554578999999999998 777 899999999999999986
No 234
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=26.25 E-value=31 Score=23.02 Aligned_cols=22 Identities=9% Similarity=0.031 Sum_probs=19.9
Q ss_pred ccHHHHHhhhcceeeehhhhHH
Q 012778 158 LDLNKAADTLEVQKRRIYDITN 179 (456)
Q Consensus 158 idLn~aA~~L~VqKRRIYDItN 179 (456)
+.+.++|+.|+|.+.-||-+++
T Consensus 22 ~s~~~ia~~lgvs~~Tv~r~l~ 43 (52)
T 1jko_C 22 HPRQQLAIIFGIGVSTLYRYFP 43 (52)
T ss_dssp CCHHHHHHTTSCCHHHHHHHSC
T ss_pred CCHHHHHHHHCCCHHHHHHHHH
Confidence 7899999999999999998765
No 235
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=26.07 E-value=55 Score=29.37 Aligned_cols=46 Identities=17% Similarity=0.196 Sum_probs=40.3
Q ss_pred HHHHHhhCCCCcccHHHHHhhhc-ceeeehhhhHHhhhhccceeccc
Q 012778 146 FINLIKHAEDGILDLNKAADTLE-VQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 146 FI~Ll~~apdg~idLn~aA~~L~-VqKRRIYDItNVLEGIGLIeK~s 191 (456)
.+.++...+.+...+.++++.++ +.+=-||--++.|+..|||++..
T Consensus 34 IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~eaGLV~~~~ 80 (151)
T 3u1d_A 34 VLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVDRGIVEKIP 80 (151)
T ss_dssp HHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEee
Confidence 44555666888899999999999 99999999999999999999874
No 236
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=25.97 E-value=35 Score=30.99 Aligned_cols=38 Identities=26% Similarity=0.304 Sum_probs=34.5
Q ss_pred CCCcccHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 154 EDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 154 pdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
..+.+.+.++|+.|++.+=-+.-.++-||..||++|..
T Consensus 24 ~~~~~s~s~aA~~L~isq~avSr~I~~LE~~~L~~R~~ 61 (230)
T 3cta_A 24 NRAYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTV 61 (230)
T ss_dssp SEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 34568899999999999999999999999999999973
No 237
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=25.46 E-value=1.2e+02 Score=25.54 Aligned_cols=32 Identities=19% Similarity=0.378 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012778 214 SLQAEVESLTIQERRLDEQIRIMQERLRDLSE 245 (456)
Q Consensus 214 ~Lq~El~~L~~eE~~LDelI~~~~q~Lr~Lte 245 (456)
-|+..++.|...-+.|.+.+..+++++..+.+
T Consensus 92 ~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~ 123 (133)
T 1fxk_C 92 SIKSQKNELESTLQKMGENLRAITDIMMKLSP 123 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666665543
No 238
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=25.39 E-value=34 Score=22.24 Aligned_cols=27 Identities=7% Similarity=0.026 Sum_probs=22.8
Q ss_pred ccHHHHHhhhcceeeehhhhHHhhhhc
Q 012778 158 LDLNKAADTLEVQKRRIYDITNVLEGI 184 (456)
Q Consensus 158 idLn~aA~~L~VqKRRIYDItNVLEGI 184 (456)
+...++|+.|+|.+.-||-+++-++.-
T Consensus 22 ~s~~~IA~~lgis~~Tv~~~~~~~~~~ 48 (51)
T 1tc3_C 22 VSLHEMSRKISRSRHCIRVYLKDPVSY 48 (51)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHCSTTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHhhHHhc
Confidence 579999999999999999988765543
No 239
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=25.19 E-value=67 Score=32.58 Aligned_cols=52 Identities=17% Similarity=0.295 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc----cccccccccchhhhcc
Q 012778 211 NASSLQAEVESLTIQERRLDEQIRIMQERLRDLSED----ENNQKWLFVTEDDIKS 262 (456)
Q Consensus 211 ~~~~Lq~El~~L~~eE~~LDelI~~~~q~Lr~Lted----~~n~~~aYVT~eDI~~ 262 (456)
++..|+.|++.|+++-.+|++.|+.++.+++++.+- +.-++-+|-.-+|+++
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 355667777777777777777777777776665442 2223455666666654
No 240
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=25.13 E-value=28 Score=34.82 Aligned_cols=98 Identities=20% Similarity=0.184 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhccCCCCCCCeE--EEeeCCCCCeEEe
Q 012778 207 EADENASSLQAEVESLTIQERRLDEQIRIMQERLRDLSEDENNQKWLFVTEDDIKSLPCFQNETL--IAIKAPHGTTLEV 284 (456)
Q Consensus 207 ~~~~~~~~Lq~El~~L~~eE~~LDelI~~~~q~Lr~Lted~~n~~~aYVT~eDI~~l~~f~~qTv--IAIKAP~gT~LEV 284 (456)
....+.++|.+|+..|+..-...+..|+.++..|..+...-...+-..+..+.....+| ..++ -.-..++..+.++
T Consensus 2 ~~~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~~~~--~~~~~~~~~~~~~~dC~~i 79 (323)
T 1lwu_C 2 SGQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRPC--QDTTANKISPITGKDCQQV 79 (323)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC--EEHHHHTBCSCCCSSHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--ccccccccCCCCCcCHHHH
Q ss_pred cC---CCcccCCCCCceEEEEecCCCceEEE
Q 012778 285 PD---PDEAVDYPQRRYRIVLRSTMGPIDVY 312 (456)
Q Consensus 285 Pd---Pde~~~~~qr~YqI~LkS~~GPIdVy 312 (456)
.. ...++ |.|.......|+.||
T Consensus 80 ~~~g~~~SGv------Y~I~p~~~~~pf~V~ 104 (323)
T 1lwu_C 80 VDNGGKDSGL------YYIKPLKAKQPFLVF 104 (323)
T ss_dssp HTTTCCSSEE------EEECCTTCSSCEEEE
T ss_pred HhcCCCCCeE------EEEecCCCCCcEEEE
No 241
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=25.13 E-value=57 Score=29.74 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=32.1
Q ss_pred cccHHHHHhhhcceeeehhhhHHhhhhccceecccC
Q 012778 157 ILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLK 192 (456)
Q Consensus 157 ~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sK 192 (456)
.....++|+.|++.+--+..+++-||.-|||++...
T Consensus 24 ~~~~~~La~~l~vs~~tvs~~l~~Le~~GlV~r~~~ 59 (230)
T 1fx7_A 24 TPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGD 59 (230)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTT
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 344599999999999999999999999999999753
No 242
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=24.72 E-value=39 Score=28.94 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=34.0
Q ss_pred cccHHHHHhhhcceeeehhhhHHhhhhccceecccCCeEE
Q 012778 157 ILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQ 196 (456)
Q Consensus 157 ~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN~i~ 196 (456)
.+...++|..||+.+..++=+.+-|+.-|+|+.. +++|.
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~-~~~i~ 207 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVKLS-RGKIT 207 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeC-CCEEE
Confidence 5678999999999999999999999999999875 55443
No 243
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=24.03 E-value=62 Score=27.80 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=33.2
Q ss_pred ccHHHHHhhhcceeeehhhhHHhhhhccceecccCCeEE
Q 012778 158 LDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQ 196 (456)
Q Consensus 158 idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN~i~ 196 (456)
+...++|..||+.+..+.-+.+-|+.-|+|++. ++.|.
T Consensus 179 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~-~~~i~ 216 (227)
T 3dkw_A 179 VAKQLVAGHLSIQPETFSRIMHRLGDEGIIHLD-GREIS 216 (227)
T ss_dssp SCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEES-SSCEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCcEEec-CCEEE
Confidence 566899999999999999999999999999886 44443
No 244
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.97 E-value=63 Score=27.58 Aligned_cols=47 Identities=11% Similarity=0.198 Sum_probs=39.1
Q ss_pred HHHHHHhhCCCCcccHHHHHhhh-----cceeeehhhhHHhhhhccceecccC
Q 012778 145 KFINLIKHAEDGILDLNKAADTL-----EVQKRRIYDITNVLEGIGLIEKKLK 192 (456)
Q Consensus 145 KFI~Ll~~apdg~idLn~aA~~L-----~VqKRRIYDItNVLEGIGLIeK~sK 192 (456)
..+++|..+ ++.+...++.+.| ++.+=-+|-.++.|+..|||.|..-
T Consensus 26 ~Il~~L~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~ 77 (145)
T 2fe3_A 26 AILEYLVNS-MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTY 77 (145)
T ss_dssp HHHHHHHHC-SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEee
Confidence 356667654 5678999999999 7889999999999999999998653
No 245
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=23.96 E-value=47 Score=29.29 Aligned_cols=45 Identities=11% Similarity=0.101 Sum_probs=34.2
Q ss_pred CCCCCCcHHHHHHHHHHHHhhCCCCcccHHHHHhhhcceeeehhh
Q 012778 132 PCRYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYD 176 (456)
Q Consensus 132 ~~R~d~SLglLTkKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYD 176 (456)
..|...+=..|..-.++++.+..-.-+.+..+|+.+||.|.-||=
T Consensus 20 ~~r~~~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~ 64 (211)
T 3fiw_A 20 QGMTKMNRETVITEALDLLDEVGLDGVSTRRLAKRLGVEQPSLYW 64 (211)
T ss_dssp ----CCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHT
T ss_pred ccccccCHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHH
Confidence 344455567788888888877655679999999999999999984
No 246
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=23.87 E-value=69 Score=27.74 Aligned_cols=36 Identities=14% Similarity=0.215 Sum_probs=32.8
Q ss_pred ccHHHHHhhhcceeeehhhhHHhhhhccceecccCC
Q 012778 158 LDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKN 193 (456)
Q Consensus 158 idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN 193 (456)
+...++|..||+.+..+.=+.+-|+.-|+|++..+.
T Consensus 164 ~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~~~~~ 199 (222)
T 1ft9_A 164 FTVEEIANLIGSSRQTTSTALNSLIKEGYISRQGRG 199 (222)
T ss_dssp CCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEECSTT
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEEcCCc
Confidence 678999999999999999999999999999987443
No 247
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=23.74 E-value=64 Score=28.60 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=34.6
Q ss_pred cccHHHHHhhhcceeeehhhhHHhhhhccceecccCCeEEE
Q 012778 157 ILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQW 197 (456)
Q Consensus 157 ~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN~i~W 197 (456)
.+...++|..||+.+..+.=+++-|+.-|+|++.. +.|.-
T Consensus 177 ~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~~-~~i~i 216 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLASLKRENILDKKK-NKIIV 216 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECS-SEEEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEeCC-CEEEE
Confidence 46889999999999999999999999999999874 44443
No 248
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=23.58 E-value=19 Score=31.37 Aligned_cols=42 Identities=17% Similarity=0.068 Sum_probs=33.0
Q ss_pred CCCcHHHHHHHHHHHHhhCCCCcccHHHHHhhhcceeeehhh
Q 012778 135 YDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYD 176 (456)
Q Consensus 135 ~d~SLglLTkKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYD 176 (456)
.+..-..|....++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 38 ~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~ 79 (225)
T 2id3_A 38 TARIREAVLLAAGDALAADGFDALDLGEIARRAGVGKTTVYR 79 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHH
Confidence 344445666778888877655679999999999999999984
No 249
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=23.55 E-value=61 Score=23.09 Aligned_cols=37 Identities=19% Similarity=0.279 Sum_probs=28.9
Q ss_pred HHHhhCCCCcccHHHHHhhh-----cceeeehhhhHHhhhhccceecc
Q 012778 148 NLIKHAEDGILDLNKAADTL-----EVQKRRIYDITNVLEGIGLIEKK 190 (456)
Q Consensus 148 ~Ll~~apdg~idLn~aA~~L-----~VqKRRIYDItNVLEGIGLIeK~ 190 (456)
.++.. ++.+...++++.| +|.++-||-.++ .+|+| |.
T Consensus 12 ~ll~~--~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~---~lg~v-~~ 53 (64)
T 2p5k_A 12 EIITS--NEIETQDELVDMLKQDGYKVTQATVSRDIK---ELHLV-KV 53 (64)
T ss_dssp HHHHH--SCCCSHHHHHHHHHHTTCCCCHHHHHHHHH---HHTCE-EE
T ss_pred HHHHc--CCCCCHHHHHHHHHHhCCCcCHHHHHHHHH---HcCCE-EE
Confidence 44543 4679999999999 999999997777 56777 54
No 250
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=23.41 E-value=59 Score=28.66 Aligned_cols=35 Identities=14% Similarity=0.094 Sum_probs=31.8
Q ss_pred cccHHHHHhhhcceee-ehhhhHHhhhhccceeccc
Q 012778 157 ILDLNKAADTLEVQKR-RIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 157 ~idLn~aA~~L~VqKR-RIYDItNVLEGIGLIeK~s 191 (456)
.+...++|..||+.+| .+.=+++-|+.-|+|++..
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~~~ 204 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKN 204 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEET
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEecC
Confidence 4667899999999998 9999999999999999874
No 251
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=23.20 E-value=99 Score=23.80 Aligned_cols=30 Identities=17% Similarity=0.338 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012778 211 NASSLQAEVESLTIQERRLDEQIRIMQERL 240 (456)
Q Consensus 211 ~~~~Lq~El~~L~~eE~~LDelI~~~~q~L 240 (456)
.+..|+.+++.|..+...|...|..+.++|
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777777666554
No 252
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=23.16 E-value=55 Score=29.10 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=34.0
Q ss_pred HHHHHhhCCCCcccHHHHHhhhc--------------ceeeehhhhHHhhhhccceecccC
Q 012778 146 FINLIKHAEDGILDLNKAADTLE--------------VQKRRIYDITNVLEGIGLIEKKLK 192 (456)
Q Consensus 146 FI~Ll~~apdg~idLn~aA~~L~--------------VqKRRIYDItNVLEGIGLIeK~sK 192 (456)
+.+++...+.|. .++|+.++ |++=-|-.++..||..|||++..+
T Consensus 59 lr~~i~~g~~G~---~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~~~ 116 (150)
T 2v7f_A 59 LRRVYLDGPVGI---ERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPG 116 (150)
T ss_dssp HHHHHHHCSBCH---HHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHhCCCCH---HHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHHCCCEEEeCC
Confidence 344444444444 99999999 777779999999999999998743
No 253
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=22.81 E-value=1.8e+02 Score=25.89 Aligned_cols=96 Identities=24% Similarity=0.311 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhh-CCCCc---------------ccHHHHHhhhcc-eeeehhhhHHhhhhccceecccCCeEEEeecC
Q 012778 139 LGLLTKKFINLIKH-AEDGI---------------LDLNKAADTLEV-QKRRIYDITNVLEGIGLIEKKLKNRIQWKGLD 201 (456)
Q Consensus 139 LglLTkKFI~Ll~~-apdg~---------------idLn~aA~~L~V-qKRRIYDItNVLEGIGLIeK~sKN~i~W~G~d 201 (456)
...|-+.|..+.+. .||.. .-||+|=+.|.= .+|+.||.. |.|+.+-.-. + .
T Consensus 20 ~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~--l~g~~~~~e~--~-------~ 88 (174)
T 3hho_A 20 GSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLS--LQGIEMNAEQ--Q-------T 88 (174)
T ss_dssp HHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH--HTTCCCC-------------C
T ss_pred HHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH--ccCCCccccc--C-------C
Confidence 67888888887753 55542 346777777765 899999974 4566654321 0 0
Q ss_pred CCCCCchhHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhhhhc
Q 012778 202 VSRPGEADENASSLQAEVES----------LTIQERRLDEQIRIMQERLRDLSED 246 (456)
Q Consensus 202 ~s~~~~~~~~~~~Lq~El~~----------L~~eE~~LDelI~~~~q~Lr~Lted 246 (456)
...+ ++-..+=.+.++++. |..-..++++.|+.|.++|....++
T Consensus 89 ~~d~-~fLme~me~rE~le~~~~~~d~~~~l~~l~~~~~~~~~~~~~~l~~~~~~ 142 (174)
T 3hho_A 89 LQDP-MFLMEQMELREELESVTACADPEAALVAFDTKVTAMQRHYLAQLQGQLAQ 142 (174)
T ss_dssp CCCH-HHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCH-HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1111 222222233344433 5555566777777777777777664
No 254
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=22.76 E-value=1.7e+02 Score=20.12 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012778 212 ASSLQAEVESLTIQERRLDEQIRIMQ 237 (456)
Q Consensus 212 ~~~Lq~El~~L~~eE~~LDelI~~~~ 237 (456)
+..|++|+..|..+-..|.-.|..+.
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777776666665555544
No 255
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=22.74 E-value=1.2e+02 Score=22.36 Aligned_cols=38 Identities=16% Similarity=0.216 Sum_probs=28.2
Q ss_pred cHHHHHHHHHH-HHhhCCCCcccHHHHHhhhcceeeehhhhHH
Q 012778 138 SLGLLTKKFIN-LIKHAEDGILDLNKAADTLEVQKRRIYDITN 179 (456)
Q Consensus 138 SLglLTkKFI~-Ll~~apdg~idLn~aA~~L~VqKRRIYDItN 179 (456)
.|..+-+.+|. .+... | +...+|+.|||.|+-||.-+.
T Consensus 17 ~l~~~Er~~I~~aL~~~--g--n~~~aA~~LGIsr~tL~rklk 55 (61)
T 1g2h_A 17 IIGFYEAQVLKLFYAEY--P--STRKLAQRLGVSHTAIANKLK 55 (61)
T ss_dssp SCSHHHHHHHHHHHHHS--C--SHHHHHHHTTSCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--C--CHHHHHHHhCCCHHHHHHHHH
Confidence 35556667766 45554 3 678999999999999997654
No 256
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=22.72 E-value=33 Score=26.82 Aligned_cols=26 Identities=12% Similarity=0.302 Sum_probs=23.4
Q ss_pred CCCcccHHHHHhhhcceeeehhhhHH
Q 012778 154 EDGILDLNKAADTLEVQKRRIYDITN 179 (456)
Q Consensus 154 pdg~idLn~aA~~L~VqKRRIYDItN 179 (456)
....+.+.+||+-|+|.+..+|.+++
T Consensus 13 ~K~~LTi~EaAeylgIg~~~l~~L~~ 38 (70)
T 1y6u_A 13 ERYTLTIEEASKYFRIGENKLRRLAE 38 (70)
T ss_dssp TSSEEEHHHHHHHTCSCHHHHHHHHH
T ss_pred ccceeCHHHHHHHHCcCHHHHHHHHH
Confidence 45679999999999999999999985
No 257
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=22.46 E-value=78 Score=29.10 Aligned_cols=50 Identities=22% Similarity=0.231 Sum_probs=40.4
Q ss_pred HHHHHHHHHhh---CCCCcc-cHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 142 LTKKFINLIKH---AEDGIL-DLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 142 LTkKFI~Ll~~---apdg~i-dLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
+...+.+.+.. .++..+ ...++|+.++|+|=-+-..++.|+.-|+|.+..
T Consensus 10 i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~g~i~~~~ 63 (239)
T 3bwg_A 10 IATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQVR 63 (239)
T ss_dssp HHHHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEeC
Confidence 33444454433 467788 899999999999999999999999999999864
No 258
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=22.35 E-value=87 Score=30.25 Aligned_cols=41 Identities=12% Similarity=0.291 Sum_probs=36.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 012778 206 GEADENASSLQAEVESLTIQERRLDEQIRIMQERLRDLSED 246 (456)
Q Consensus 206 ~~~~~~~~~Lq~El~~L~~eE~~LDelI~~~~q~Lr~Lted 246 (456)
.++++.+..|...++.+.+.|+.....|+..+++|++|-+.
T Consensus 9 d~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~ 49 (233)
T 2yko_A 9 DQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDY 49 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677899999999999999999999999999999998664
No 259
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=21.75 E-value=1.5e+02 Score=25.88 Aligned_cols=81 Identities=16% Similarity=0.052 Sum_probs=0.0
Q ss_pred ccHHHHHhhhcceeeehhhhHHhhhhcccee-cccCCeEEEeecCCCCCCchhHHHHHHH------HHHHHHHH------
Q 012778 158 LDLNKAADTLEVQKRRIYDITNVLEGIGLIE-KKLKNRIQWKGLDVSRPGEADENASSLQ------AEVESLTI------ 224 (456)
Q Consensus 158 idLn~aA~~L~VqKRRIYDItNVLEGIGLIe-K~sKN~i~W~G~d~s~~~~~~~~~~~Lq------~El~~L~~------ 224 (456)
+.+.++|+.+||..|-|. -.|.+|||. ....|.++.-..... ..-..+..|+ +|+..+-.
T Consensus 12 ~~i~e~A~~~gvs~~TLR----~ye~~Gll~p~r~~~g~R~Y~~~dl---~~l~~I~~lr~~G~sl~eI~~~l~~~~~~~ 84 (154)
T 2zhg_A 12 LTPGEVAKRSGVAVSALH----FYESKGLITSIRNSGNQRRYKRDVL---RYVAIIKIAQRIGIPLATIGEAFGVLPEGH 84 (154)
T ss_dssp BCHHHHHHHHTSCHHHHH----HHHHTTSSCCEECTTSCEEBCTTHH---HHHHHHHHHHHHTCCHHHHHHHHCC-----
T ss_pred CCHHHHHHHHCcCHHHHH----HHHHcCCCCcccCCCCCEEeCHHHH---HHHHHHHHHHHCCCCHHHHHHHHHhccccC
Q ss_pred ------HHHHHHHHHHHHHHHHHhhhh
Q 012778 225 ------QERRLDEQIRIMQERLRDLSE 245 (456)
Q Consensus 225 ------eE~~LDelI~~~~q~Lr~Lte 245 (456)
...-|.+++..+.+++..|..
T Consensus 85 ~~~~~~~~~ll~~~~~~l~~qi~~L~~ 111 (154)
T 2zhg_A 85 TLSAKEWKQLSSQWREELDRRIHTLVA 111 (154)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHH
No 260
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=21.57 E-value=54 Score=30.89 Aligned_cols=42 Identities=12% Similarity=0.226 Sum_probs=38.6
Q ss_pred CCcccHHHHHhhhcceeeehhhhHHhhhhccceecccCCeEE
Q 012778 155 DGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQ 196 (456)
Q Consensus 155 dg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN~i~ 196 (456)
++..+..++|+.|++..+-+-..++-|...|+|++...+.|.
T Consensus 176 ~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~~~~~~~~~ 217 (232)
T 2qlz_A 176 NGRATVEELSDRLNLKEREVREKISEMARFVPVKIINDNTVV 217 (232)
T ss_dssp SSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEEEETTTEEE
T ss_pred cCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeEEecCCeEE
Confidence 578899999999999999999999999999999988777765
No 261
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=21.54 E-value=66 Score=27.10 Aligned_cols=43 Identities=9% Similarity=0.095 Sum_probs=35.5
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCCcccHHHHHhhhcceeeehhh
Q 012778 134 RYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYD 176 (456)
Q Consensus 134 R~d~SLglLTkKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYD 176 (456)
|.+..-..|....++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 27 ~~~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~aGvs~~t~Y~ 69 (222)
T 3bru_A 27 DASLAHQSLIRAGLEHLTEKGYSSVGVDEILKAARVPKGSFYH 69 (222)
T ss_dssp CGGGHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHcCCCcCcHHHHHHHhCCCcchhhh
Confidence 3455556788889999988766789999999999999999983
No 262
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=21.46 E-value=1.7e+02 Score=22.32 Aligned_cols=32 Identities=16% Similarity=0.332 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012778 210 ENASSLQAEVESLTIQERRLDEQIRIMQERLR 241 (456)
Q Consensus 210 ~~~~~Lq~El~~L~~eE~~LDelI~~~~q~Lr 241 (456)
.....|+.+...|..+-..|...+.++.+-|.
T Consensus 30 ~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 30 GECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555555555444443
No 263
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=21.45 E-value=1.1e+02 Score=24.32 Aligned_cols=29 Identities=10% Similarity=0.162 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012778 212 ASSLQAEVESLTIQERRLDEQIRIMQERL 240 (456)
Q Consensus 212 ~~~Lq~El~~L~~eE~~LDelI~~~~q~L 240 (456)
+..|..++..|+.....|......+.+++
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i 59 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKV 59 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433333333333333333
No 264
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=21.42 E-value=53 Score=28.37 Aligned_cols=46 Identities=13% Similarity=0.365 Sum_probs=38.2
Q ss_pred HHHHHhhCCCCcccHHHHHhhh-----cceeeehhhhHHhhhhccceeccc
Q 012778 146 FINLIKHAEDGILDLNKAADTL-----EVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 146 FI~Ll~~apdg~idLn~aA~~L-----~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
.+++|..+.++.+...++.+.| .|.+=-||-.++.|+..|||.|..
T Consensus 22 Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 72 (150)
T 2w57_A 22 ILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHH 72 (150)
T ss_dssp HHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEEE
Confidence 5666665443678999999998 688888999999999999999874
No 265
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=21.35 E-value=76 Score=27.02 Aligned_cols=38 Identities=8% Similarity=0.157 Sum_probs=33.5
Q ss_pred cccHHHHHhhhcceeeehhhhHHhhhhccceecccCCeE
Q 012778 157 ILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRI 195 (456)
Q Consensus 157 ~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN~i 195 (456)
.+...++|..||+.+..+.=+.+-|+.-|+|++. ++.|
T Consensus 163 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~-~~~i 200 (216)
T 4ev0_A 163 QIRHHELAALAGTSRETVSRVLHALAEEGVVRLG-PGTV 200 (216)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE-TTEE
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec-CCEE
Confidence 4678999999999999999999999999999875 4444
No 266
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=21.32 E-value=77 Score=26.52 Aligned_cols=36 Identities=14% Similarity=0.392 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHhhhcceeeehh
Q 012778 140 GLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIY 175 (456)
Q Consensus 140 glLTkKFI~Ll~~apdg~idLn~aA~~L~VqKRRIY 175 (456)
..|...+++++.+..-..+.+.++|++.||.|.-||
T Consensus 16 ~~Il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y 51 (195)
T 2iu5_A 16 KIIAKAFKDLMQSNAYHQISVSDIMQTAKIRRQTFY 51 (195)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCGGGGG
T ss_pred HHHHHHHHHHHHhCCCCeeCHHHHHHHhCCCHHHHH
Confidence 567777888998866667999999999999999998
No 267
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=21.03 E-value=92 Score=29.41 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhh---CCCCcc-cHHHHHhhhcceeeehhhhHHhhhhccceeccc
Q 012778 141 LLTKKFINLIKH---AEDGIL-DLNKAADTLEVQKRRIYDITNVLEGIGLIEKKL 191 (456)
Q Consensus 141 lLTkKFI~Ll~~---apdg~i-dLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~s 191 (456)
.+...+.+.+.. .++..+ ...++|+.++|+|=-+-..++.|+.-|+|++..
T Consensus 33 ~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~ 87 (272)
T 3eet_A 33 RVAGDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEARKVLMAEGLVEGRS 87 (272)
T ss_dssp HHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHHHcCCCCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 445556665543 467778 899999999999999999999999999998764
No 268
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=20.88 E-value=78 Score=26.42 Aligned_cols=44 Identities=11% Similarity=0.198 Sum_probs=35.7
Q ss_pred CCCCCcHHHHHHHHHHHHhhCCCCcccHHHHHhhhcceeeehhh
Q 012778 133 CRYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYD 176 (456)
Q Consensus 133 ~R~d~SLglLTkKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYD 176 (456)
.|....-..|....++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 13 ~~~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 56 (207)
T 2rae_A 13 RRPSTTQDRISTVGIELFTEQGFDATSVDEVAEASGIARRTLFR 56 (207)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHCTTTSCHHHHHHHTTSCHHHHHH
T ss_pred cchHhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcchHhh
Confidence 34455556788889999987666779999999999999999884
No 269
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=20.74 E-value=65 Score=27.79 Aligned_cols=39 Identities=15% Similarity=0.266 Sum_probs=34.2
Q ss_pred cccHHHHHhhhcceeeehhhhHHhhhhccceecc-cCCeEE
Q 012778 157 ILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKK-LKNRIQ 196 (456)
Q Consensus 157 ~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~-sKN~i~ 196 (456)
.+...++|..||+.+..+.=+.+-|+.-|+|++. .+ .|.
T Consensus 167 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~-~i~ 206 (220)
T 2fmy_A 167 GLNTEEIALMLGTTRQTVSVLLNDFKKMGILERVNQR-TLL 206 (220)
T ss_dssp SSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEESSSS-EEE
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEEcCCC-EEE
Confidence 4678999999999999999999999999999986 44 554
No 270
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.68 E-value=3.4e+02 Score=27.66 Aligned_cols=39 Identities=26% Similarity=0.345 Sum_probs=27.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012778 207 EADENASSLQAEVESLTIQERRLDEQIRIMQERLRDLSE 245 (456)
Q Consensus 207 ~~~~~~~~Lq~El~~L~~eE~~LDelI~~~~q~Lr~Lte 245 (456)
++..++++|+.|++-|..+++.|.+.++.++.+++.+.+
T Consensus 46 dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~e 84 (428)
T 4b4t_K 46 DIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQE 84 (428)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667888888888888888887777777777665544
No 271
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=20.31 E-value=1e+02 Score=30.62 Aligned_cols=50 Identities=22% Similarity=0.338 Sum_probs=34.6
Q ss_pred CcHHHHHH------HHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceec
Q 012778 137 SSLGLLTK------KFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEK 189 (456)
Q Consensus 137 ~SLglLTk------KFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK 189 (456)
+-||++.- ..+++|....++.+.|+++++..++. .-||+..|+.+|++..
T Consensus 188 SDLG~~sYrsYW~~~il~~L~~~~~~~isi~~is~~T~i~---~~DIi~tL~~l~~l~~ 243 (284)
T 2ozu_A 188 SDLGRLSYMAYWKSVILECLYHQNDKQISIKKLSKLTGIC---PQDITSTLHHLRMLDF 243 (284)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHCBC---HHHHHHHHHHTTCC--
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcEeHHHHHHHhCCC---HHHHHHHHHHCCCEEe
Confidence 34787762 35666666677889999999999984 5799999999999963
No 272
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=20.31 E-value=76 Score=25.99 Aligned_cols=30 Identities=33% Similarity=0.513 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012778 212 ASSLQAEVESLTIQERRLDEQIRIMQERLR 241 (456)
Q Consensus 212 ~~~Lq~El~~L~~eE~~LDelI~~~~q~Lr 241 (456)
...|+.|+..+...-.++.+.|+.+.+.|+
T Consensus 46 ~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 46 KDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555555554444
No 273
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=20.27 E-value=1.7e+02 Score=24.27 Aligned_cols=28 Identities=14% Similarity=0.330 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 012778 219 VESLTIQERRLDEQIRIMQERLRDLSED 246 (456)
Q Consensus 219 l~~L~~eE~~LDelI~~~~q~Lr~Lted 246 (456)
|+.-..+-+.|.+.|...+..|++|..+
T Consensus 53 l~~h~~ei~~le~~i~rhk~~i~~l~~~ 80 (84)
T 1gmj_A 53 ISHHAKEIERLQKEIERHKQSIKKLKQS 80 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3333344444555566666677766543
Done!