BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012779
(456 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VZL4|MSL1_ARATH Mechanosensitive ion channel protein 1, mitochondrial
OS=Arabidopsis thaliana GN=MSL1 PE=2 SV=1
Length = 497
Score = 365 bits (938), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/308 (60%), Positives = 228/308 (74%), Gaps = 9/308 (2%)
Query: 95 PTSKNFCSR-RLATFASISPFLGHRSYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIV 153
P+ +F S RL A +LGH SY+ F SK+D D + + T +
Sbjct: 49 PSMISFSSNIRLHNDAKPFNYLGHSSYARAFSSKSD-----DFGSIVASGVTGSGDGNGN 103
Query: 154 GSDSFDKIKDAWKSVVDGVSYTGQKAKD---ELSPQIEQLLDAHPYLRDVIVPVSCYLTG 210
G+D +K KD ++ VD V+ T +K KD E+ P ++Q LD++PYL+DVIVPVS +TG
Sbjct: 104 GNDWVEKAKDVLQTSVDAVTETAKKTKDVSDEMIPHVQQFLDSNPYLKDVIVPVSLTMTG 163
Query: 211 TVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFV 270
T+ AWVVMPR+LRRFH YA+Q LL G S E VPYEKSFWGALEDP RYL+TF+AF
Sbjct: 164 TLFAWVVMPRILRRFHTYAMQSSAKLLPVGFSNEDVPYEKSFWGALEDPARYLVTFIAFA 223
Query: 271 QIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLAL 330
QI MVAPTTIA+QY + +GAVILS VWFL+RWKTNV TR ++++S GLDREK+L L
Sbjct: 224 QIAAMVAPTTIAAQYFSPTVKGAVILSLVWFLYRWKTNVITRMLSAKSFGGLDREKVLTL 283
Query: 331 DRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKP 390
D++SSVGLF IGLMA AEACGVAVQSILTVGG+GGVATAFA+RD+LGNVLSGLSMQFS+P
Sbjct: 284 DKVSSVGLFAIGLMASAEACGVAVQSILTVGGVGGVATAFAARDILGNVLSGLSMQFSRP 343
Query: 391 FSLGDTIK 398
FS+GDTIK
Sbjct: 344 FSMGDTIK 351
>sp|P0AEB5|YNAI_ECOLI MscS family inner membrane protein YnaI OS=Escherichia coli (strain
K12) GN=ynaI PE=1 SV=1
Length = 343
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 293 AVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGV 352
AVIL+ FL N F + Q G D + RI + + V+ ++ E G+
Sbjct: 87 AVILTIKLFLL---INQFEK---QQIKKGRDITSARIMSRIIKITIIVVLVLLYGEHFGM 140
Query: 353 AVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIK 398
++ +LT GGIGG+A A +D+L N SG+ + F +PFS+GD I+
Sbjct: 141 SLSGLLTFGGIGGLAVGMAGKDILSNFFSGIMLYFDRPFSIGDWIR 186
>sp|P0AEB6|YNAI_ECO57 MscS family inner membrane protein YnaI OS=Escherichia coli O157:H7
GN=ynaI PE=3 SV=1
Length = 343
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 293 AVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGV 352
AVIL+ FL N F + Q G D + RI + + V+ ++ E G+
Sbjct: 87 AVILTIKLFLL---INQFEK---QQIKKGRDITSARIMSRIIKITIIVVLVLLYGEHFGM 140
Query: 353 AVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIK 398
++ +LT GGIGG+A A +D+L N SG+ + F +PFS+GD I+
Sbjct: 141 SLSGLLTFGGIGGLAVGMAGKDILSNFFSGIMLYFDRPFSIGDWIR 186
>sp|O28726|Y1546_ARCFU Uncharacterized MscS family protein AF_1546 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=AF_1546 PE=3 SV=1
Length = 283
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 47/81 (58%)
Query: 319 IAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGN 378
I + R+++ + ++ G+ ++ +A+ A G+ + +L GGI G+ FAS+ V+ N
Sbjct: 47 IDKMKRDQLELMLKVIYFGIIIVAFIAVLPALGLDLSGLLVAGGITGIVLGFASQSVVAN 106
Query: 379 VLSGLSMQFSKPFSLGDTIKV 399
++SG+ + KP +GD + +
Sbjct: 107 LVSGIFLISEKPIKIGDQVNI 127
>sp|O25170|Y415_HELPY Uncharacterized MscS family protein HP_0415 OS=Helicobacter pylori
(strain ATCC 700392 / 26695) GN=HP_0415 PE=3 SV=1
Length = 623
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 290 WRGAV-ILSFVWF---LHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMA 345
W GAV I+ W L + MA++S +E + + ++ +F++ L+
Sbjct: 321 WVGAVYIMLLAWLVIALFKGYGEALVTNMATKSTHNFRKEVINLILKVVYFLIFIVALLG 380
Query: 346 LAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTI 397
+ + G V +I+ GIGG+A A A +DVL N + + + FS GD I
Sbjct: 381 VLKQLGFNVSAIIASLGIGGLAVALAVKDVLANFFASVILLLDNSFSQGDWI 432
>sp|Q9ZKG7|Y415_HELPJ Uncharacterized MscS family protein jhp_0969 OS=Helicobacter pylori
(strain J99) GN=jhp_0969 PE=3 SV=1
Length = 623
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 290 WRGAV-ILSFVWF---LHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMA 345
W GAV I+ W L + +A++S +E + + ++ +F++ L+
Sbjct: 321 WVGAVYIMLLAWLVIALFKGYGEALVTNVATKSTHNFRKEVINLILKVVYFLIFIVALLG 380
Query: 346 LAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTI 397
+ + G V +I+ GIGG+A A A +DVL N + + + FS GD I
Sbjct: 381 VLKQLGFNVSAIIASLGIGGLAVALAVKDVLANFFASVILLLDNSFSQGDWI 432
>sp|O66994|Y812_AQUAE Uncharacterized MscS family protein aq_812 OS=Aquifex aeolicus
(strain VF5) GN=aq_812 PE=3 SV=1
Length = 368
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 88/205 (42%), Gaps = 32/205 (15%)
Query: 255 ALEDPVRYLITFMAF-VQIGMMVAPTTIASQYL---AQAWRGAVILSFVWFLHRWKTNVF 310
A P Y I F + + ++ P A ++L + G I+ F+ H F
Sbjct: 73 AFVKPFSYFIVVFGFYLSLLVLEVPKVYADKFLKTFSLLILGWAIIRFLNLFHNKIVEFF 132
Query: 311 TRAMASQSIAGLDREKMLALDRISSVGLFVIGLM--ALAEACGVAVQSILTVGGIGGVAT 368
+ + G D + + + + FV+ ++ +L + GV + +IL G+ G+A
Sbjct: 133 VK------VGGKDFAEEVGDFILKILKAFVVVIVGASLLQEWGVNIGAILASVGLLGLAV 186
Query: 369 AFASRDVLGNVLSGLSMQFSKPFSLGDTIKVKRAYTPLKMIFISFFQIGNKVCRSRDFML 428
+ A++D N+LSGL + KP +G+T+KVK ++ IG + + R F
Sbjct: 187 SLAAKDTFENILSGLIILLDKPVKVGETVKVKDFMGSVE-------DIGLRSTKIRTF-- 237
Query: 429 KQRLSVFLTTIHRSCHTCPIREVLN 453
+S T P R+++N
Sbjct: 238 -----------DKSLVTIPNRDIVN 251
>sp|Q56X46|MSL2_ARATH Mechanosensitive ion channel protein 2, chloroplastic
OS=Arabidopsis thaliana GN=MSL2 PE=2 SV=1
Length = 673
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Query: 333 ISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFS 392
+++V LF+ E G + Q LT GG+G V A R++L N LS + + ++PF
Sbjct: 247 VAAVSLFM-------ELLGFSTQKWLTAGGLGTVLITLAGREILTNFLSSVMIHATRPFV 299
Query: 393 LGDTIKVK 400
L + I+ K
Sbjct: 300 LNEWIQTK 307
>sp|Q8L7W1|MSL3_ARATH Mechanosensitive ion channel protein 3, chloroplastic
OS=Arabidopsis thaliana GN=MSL3 PE=2 SV=1
Length = 678
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 348 EACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKVK 400
E G + Q LT GG+G V A R++L N LS + + ++PF L + I+ K
Sbjct: 257 ELLGFSTQKWLTAGGLGTVLLTLAGREILTNFLSSIMIHATRPFVLNEWIQTK 309
>sp|O07594|YHDY_BACSU Uncharacterized MscS family protein YhdY OS=Bacillus subtilis
(strain 168) GN=yhdY PE=3 SV=1
Length = 371
Score = 40.8 bits (94), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 322 LDREKMLA--LDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNV 379
LD + +LA L ++ + + + +A+ V + G+GG+A A A++D + N
Sbjct: 127 LDMDDILAPFLSKLLRFVIIALSVSVIAQEFNYDVNGFVAGLGLGGLAFALAAKDTISNF 186
Query: 380 LSGLSMQFSKPFSLGDTIK 398
G+ + KPF++GD ++
Sbjct: 187 FGGIIIITEKPFTIGDWVE 205
>sp|Q57634|MSMJS_METJA Small-conductance mechanosensitive channel MscMJ
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0170
PE=1 SV=1
Length = 350
Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 82/167 (49%), Gaps = 11/167 (6%)
Query: 263 LITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTR---AMASQSI 319
++T + + ++ P I + + +A + VILS +F ++ +F + ++
Sbjct: 65 VVTLFFYFGLRFLILPDYIL-KLIDEAVKVVVILSATYFAVKFIDGIFEHYLIPLTEKTE 123
Query: 320 AGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNV 379
LD + L ++ + ++G++ + G + ++L G+GG+A A A +D + N
Sbjct: 124 TELDEHIIKPLKKVVKILTILLGILTALSSVGYDITALLAGLGVGGLALALAMQDTIKNF 183
Query: 380 LSGLSMQFSKPFSLGDTIKVKRAYTPLKMIFISFFQIGNKVCRSRDF 426
++G+ + KPFSLG +KVK A ++ +IG + R R F
Sbjct: 184 IAGILILIDKPFSLGHWVKVKGAEGIVE-------EIGIRSTRIRTF 223
>sp|O14050|YEYH_SCHPO Uncharacterized MscS family protein C2C4.17c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC2C4.17c PE=3 SV=1
Length = 840
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 12/142 (8%)
Query: 310 FTRAMASQ--SIAGLDREKMLALDRISSVGLFVIGLMAL---AEACGVAVQSILTVGGIG 364
FTR ++ + SI+ R+ LAL ++ VGL V+G++A+ + +IL G
Sbjct: 420 FTREISIEFRSISSSLRDVDLALGKLDRVGLGVVGIIAVLTFISFLDTSFATILAAFGTT 479
Query: 365 GVATAFASRDVLGNVLSGLSMQFSK-PFSLGDTI---KVKRAYTPLKMIFISFFQIGNKV 420
++ +F ++S + FSK PF + D + +K L ++F F +G
Sbjct: 480 LLSLSFVFSTSAQELMSSIIFLFSKHPFDISDVVIVNNIKYEVVSLSLLFTVFRTMGGST 539
Query: 421 CRSRDFMLKQRLSVFLTTIHRS 442
++ + +L ++F+ + RS
Sbjct: 540 VQAPNSLLN---TLFIENLRRS 558
>sp|P77338|KEFA_ECOLI Potassium efflux system KefA OS=Escherichia coli (strain K12)
GN=kefA PE=1 SV=1
Length = 1120
Score = 37.0 bits (84), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 338 LFVIGLMALAEACGVAVQSILTVGGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTI 397
+ +G M + + GV+ + + V F +++ GN +SGL + F +P +GDT+
Sbjct: 893 IIAVGAMTVFGSLGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLIILFERPVRIGDTV 952
Query: 398 KV 399
+
Sbjct: 953 TI 954
>sp|P39285|YJEP_ECOLI Uncharacterized MscS family protein YjeP OS=Escherichia coli
(strain K12) GN=yjeP PE=3 SV=3
Length = 1107
Score = 36.2 bits (82), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 365 GVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKVK 400
GV F +++ N +SGL + F KP +GDT+ ++
Sbjct: 908 GVGLGFGLQEIFANFISGLIILFEKPIRIGDTVTIR 943
>sp|P0C0S3|MSCS_SHIFL Small-conductance mechanosensitive channel OS=Shigella flexneri
GN=mscS PE=3 SV=1
Length = 286
Score = 33.5 bits (75), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 301 FLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTV 360
+ R +N R M S+ I + + AL R G+ L+A GV S++ V
Sbjct: 43 IIARMISNAVNRLMISRKIDATVADFLSALVR---YGIIAFTLIAALGRVGVQTASVIAV 99
Query: 361 GGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKV 399
G G+A A + L N+ +G+ + +PF G+ + +
Sbjct: 100 LGAAGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDL 138
>sp|P0C0S1|MSCS_ECOLI Small-conductance mechanosensitive channel OS=Escherichia coli
(strain K12) GN=mscS PE=1 SV=1
Length = 286
Score = 33.5 bits (75), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 301 FLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTV 360
+ R +N R M S+ I + + AL R G+ L+A GV S++ V
Sbjct: 43 IIARMISNAVNRLMISRKIDATVADFLSALVR---YGIIAFTLIAALGRVGVQTASVIAV 99
Query: 361 GGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKV 399
G G+A A + L N+ +G+ + +PF G+ + +
Sbjct: 100 LGAAGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDL 138
>sp|P0C0S2|MSCS_ECO57 Small-conductance mechanosensitive channel OS=Escherichia coli
O157:H7 GN=mscS PE=1 SV=1
Length = 286
Score = 33.5 bits (75), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 301 FLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTV 360
+ R +N R M S+ I + + AL R G+ L+A GV S++ V
Sbjct: 43 IIARMISNAVNRLMISRKIDATVADFLSALVR---YGIIAFTLIAALGRVGVQTASVIAV 99
Query: 361 GGIGGVATAFASRDVLGNVLSGLSMQFSKPFSLGDTIKV 399
G G+A A + L N+ +G+ + +PF G+ + +
Sbjct: 100 LGAAGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDL 138
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,532,110
Number of Sequences: 539616
Number of extensions: 6168692
Number of successful extensions: 22026
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 21997
Number of HSP's gapped (non-prelim): 31
length of query: 456
length of database: 191,569,459
effective HSP length: 121
effective length of query: 335
effective length of database: 126,275,923
effective search space: 42302434205
effective search space used: 42302434205
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 63 (28.9 bits)