Query 012780
Match_columns 456
No_of_seqs 216 out of 483
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 16:05:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012780.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012780hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ig6_A MRF-2, modulator recogn 100.0 2.1E-29 7.3E-34 214.1 6.0 104 148-251 2-106 (107)
2 2eqy_A RBP2 like, jumonji, at 99.9 3.8E-27 1.3E-31 205.5 12.3 103 144-247 8-110 (122)
3 2lm1_A Lysine-specific demethy 99.9 2.1E-27 7.3E-32 201.3 9.0 96 144-240 10-105 (107)
4 2cxy_A BAF250B subunit, HBAF25 99.9 1.6E-27 5.4E-32 208.2 7.8 110 132-242 3-114 (125)
5 2kk0_A AT-rich interactive dom 99.9 3.1E-27 1.1E-31 211.5 8.1 109 129-238 13-124 (145)
6 2jxj_A Histone demethylase jar 99.9 3.1E-27 1E-31 196.9 7.1 92 146-238 4-95 (96)
7 2jrz_A Histone demethylase jar 99.9 7.5E-27 2.6E-31 202.1 8.8 97 145-242 7-103 (117)
8 2rq5_A Protein jumonji; develo 99.9 8.9E-27 3E-31 204.0 9.1 89 150-238 13-102 (121)
9 1c20_A DEAD ringer protein; DN 99.9 1.7E-26 5.9E-31 202.2 9.5 93 147-239 20-113 (128)
10 2li6_A SWI/SNF chromatin-remod 99.9 1.5E-26 5.2E-31 199.7 9.0 101 134-239 2-105 (116)
11 1kkx_A Transcription regulator 99.9 3.2E-25 1.1E-29 194.2 8.1 90 145-239 14-104 (123)
12 3gla_A Low molecular weight he 99.8 9.5E-20 3.2E-24 150.6 10.4 89 351-441 1-99 (100)
13 4fei_A Heat shock protein-rela 99.8 1E-18 3.4E-23 146.1 10.1 90 352-443 4-98 (102)
14 4eld_A MJ16.5-P1, small heat s 99.7 3.3E-17 1.1E-21 147.0 10.9 89 352-442 55-153 (161)
15 3aab_A Putative uncharacterize 99.7 3.6E-17 1.2E-21 140.6 10.5 88 352-442 23-118 (123)
16 3q9p_A Heat shock protein beta 99.7 4.4E-17 1.5E-21 132.7 8.7 81 358-439 2-84 (85)
17 1gme_A Heat shock protein 16.9 99.7 1.4E-16 4.8E-21 142.2 11.4 89 353-442 43-140 (151)
18 2wj5_A Heat shock protein beta 99.7 8E-17 2.7E-21 134.9 8.5 85 356-442 4-91 (101)
19 3l1e_A Alpha-crystallin A chai 99.7 7.8E-17 2.7E-21 136.3 7.7 85 356-442 5-92 (106)
20 2y1y_A Alpha-crystallin B chai 99.6 5.5E-16 1.9E-20 127.1 6.4 81 360-442 3-86 (90)
21 2bol_A TSP36, small heat shock 99.6 8.4E-15 2.9E-19 145.6 10.1 91 353-444 98-193 (314)
22 2klr_A Alpha-crystallin B chai 99.5 4.7E-15 1.6E-19 136.3 6.3 85 356-442 66-153 (175)
23 2bol_A TSP36, small heat shock 99.5 8.1E-15 2.8E-19 145.7 7.8 78 360-439 230-313 (314)
24 2xcm_C SGT1-like protein, cyto 98.4 1.3E-06 4.3E-11 70.3 9.1 85 354-450 3-87 (92)
25 1rl1_A Suppressor of G2 allele 98.4 1.3E-06 4.3E-11 73.4 8.6 85 354-450 10-94 (114)
26 1x5m_A Calcyclin-binding prote 96.3 0.032 1.1E-06 47.9 10.7 87 353-450 20-110 (127)
27 1wfi_A Nuclear distribution ge 96.3 0.025 8.7E-07 48.7 9.9 90 348-451 2-95 (131)
28 3qor_A Nuclear migration prote 95.9 0.061 2.1E-06 46.0 10.4 93 345-451 8-104 (121)
29 1wh0_A Ubiquitin carboxyl-term 95.8 0.028 9.5E-07 49.6 8.2 93 353-451 19-118 (134)
30 1wgv_A KIAA1068 protein; CS do 95.6 0.066 2.3E-06 45.8 9.5 94 346-451 12-108 (124)
31 2o30_A Nuclear movement protei 95.5 0.035 1.2E-06 48.0 7.5 82 354-451 5-87 (131)
32 2rh0_A NUDC domain-containing 95.5 0.066 2.3E-06 48.1 9.3 89 350-451 10-100 (157)
33 3igf_A ALL4481 protein; two-do 95.2 0.039 1.3E-06 55.7 7.7 62 364-438 306-368 (374)
34 2k8q_A Protein SHQ1; beta-sand 95.0 0.097 3.3E-06 46.8 8.8 77 354-442 4-84 (134)
35 3eud_A Protein SHQ1; CS domain 92.5 0.64 2.2E-05 40.7 9.1 77 354-442 18-98 (115)
36 1ejf_A Progesterone receptor P 92.0 0.33 1.1E-05 41.6 6.6 84 355-450 5-88 (125)
37 2cg9_X CO-chaperone protein SB 91.6 0.21 7.2E-06 43.5 5.1 74 363-440 23-97 (134)
38 2kmw_A Uncharacterized protein 91.4 0.39 1.4E-05 42.8 6.7 79 353-441 4-82 (150)
39 1ity_A TRF1; helix-turn-helix, 71.7 5.1 0.00017 30.8 4.6 41 182-232 20-60 (69)
40 1gvd_A MYB proto-oncogene prot 71.7 2.2 7.5E-05 30.9 2.4 39 182-232 13-51 (52)
41 1guu_A C-MYB, MYB proto-oncoge 71.3 3.1 0.00011 30.1 3.1 39 182-232 13-51 (52)
42 2elk_A SPCC24B10.08C protein; 66.8 5.5 0.00019 29.8 3.7 39 182-231 19-57 (58)
43 2dim_A Cell division cycle 5-l 64.8 5.5 0.00019 30.6 3.5 39 182-232 19-57 (70)
44 1x41_A Transcriptional adaptor 63.4 7.4 0.00025 29.2 3.9 38 182-231 18-55 (60)
45 1w0t_A Telomeric repeat bindin 57.8 14 0.00048 26.8 4.5 39 182-230 12-50 (53)
46 2d9a_A B-MYB, MYB-related prot 57.7 9 0.00031 28.4 3.5 38 182-231 18-55 (60)
47 2yum_A ZZZ3 protein, zinc fing 55.2 11 0.00039 29.1 3.8 44 182-232 18-61 (75)
48 2din_A Cell division cycle 5-l 53.6 18 0.00061 27.3 4.6 40 182-235 19-58 (66)
49 2cu7_A KIAA1915 protein; nucle 47.9 26 0.00089 27.0 4.8 40 182-234 19-58 (72)
50 3sjm_A Telomeric repeat-bindin 41.5 37 0.0013 26.0 4.7 39 182-230 21-59 (64)
51 1fex_A TRF2-interacting telome 37.1 32 0.0011 26.1 3.7 45 182-230 12-57 (59)
52 2yus_A SWI/SNF-related matrix- 37.0 19 0.00065 28.8 2.5 35 182-229 28-62 (79)
53 2k9n_A MYB24; R2R3 domain, DNA 35.8 28 0.00097 28.5 3.5 38 182-231 11-48 (107)
54 1gv2_A C-MYB, MYB proto-oncoge 34.9 30 0.001 28.0 3.5 37 182-230 14-50 (105)
55 2lpy_A Matrix protein P10; GAG 30.7 1.4E+02 0.0049 26.2 7.2 79 149-234 6-93 (124)
56 2k9n_A MYB24; R2R3 domain, DNA 30.7 58 0.002 26.7 4.5 42 182-236 63-104 (107)
57 2cqq_A RSGI RUH-037, DNAJ homo 29.3 60 0.002 25.6 4.2 39 199-246 31-69 (72)
58 1gv2_A C-MYB, MYB proto-oncoge 28.5 55 0.0019 26.5 4.0 36 182-230 66-101 (105)
59 2cjj_A Radialis; plant develop 26.3 1.7E+02 0.0059 24.1 6.7 41 199-246 31-71 (93)
60 1h8a_C AMV V-MYB, MYB transfor 25.3 56 0.0019 27.5 3.6 37 182-230 37-73 (128)
61 2cqr_A RSGI RUH-043, DNAJ homo 24.2 78 0.0027 25.0 4.0 26 200-230 42-67 (73)
62 3gla_A Low molecular weight he 24.0 89 0.0031 24.7 4.4 33 406-440 15-47 (100)
63 3zqc_A MYB3; transcription-DNA 22.1 75 0.0026 26.9 3.8 38 182-232 64-101 (131)
No 1
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=99.95 E-value=2.1e-29 Score=214.13 Aligned_cols=104 Identities=21% Similarity=0.412 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCC-CCCeeCCeeechhhHHHHHHhcCccchhccCcchhHhhhhcCCCCCCCcHHHHHHHHH
Q 012780 148 EEQAEFMKEIESFYRENALEF-KPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFY 226 (456)
Q Consensus 148 eEre~Fl~~L~~FmeeRGtp~-k~P~IgGK~LDLykLYk~V~~rGGydkVt~~KkWreVa~eLglP~t~TSas~~LK~~Y 226 (456)
++++.|+++|.+||+++|+++ ++|.|+|++||||+||++|+++|||++||.+++|.+||+.||++.+++++++.||++|
T Consensus 2 ~e~~~Fl~~L~~F~~~rg~~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y 81 (107)
T 1ig6_A 2 ADEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHY 81 (107)
T ss_dssp HHHHHHHHHHHHHHHTTTCCGGGCCCSSSSSCCHHHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHH
T ss_pred chHHHHHHHHHHHHHHcCCCCCcCceECCEeecHHHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHH
Confidence 588999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHhHhhcCCCCCCCCCCC
Q 012780 227 EKALLEYEKHKRLSGELQLPASSFP 251 (456)
Q Consensus 227 eKyLlpYE~~~~~~G~~~~P~~~~~ 251 (456)
++||++||+++++....+.|+++|+
T Consensus 82 ~k~L~~yE~~~~~~~~~~~p~~~~~ 106 (107)
T 1ig6_A 82 ERLILPYERFIKGEEDKPLPPIKPR 106 (107)
T ss_dssp HHHTTTTHHHHHHHTSSSSCTTCSC
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCCC
Confidence 9999999999998888888887764
No 2
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.94 E-value=3.8e-27 Score=205.50 Aligned_cols=103 Identities=19% Similarity=0.305 Sum_probs=95.6
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCCCCCCeeCCeeechhhHHHHHHhcCccchhccCcchhHhhhhcCCCCCCCcHHHHHH
Q 012780 144 EGTPEEQAEFMKEIESFYRENALEFKPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFR 223 (456)
Q Consensus 144 ~g~~eEre~Fl~~L~~FmeeRGtp~k~P~IgGK~LDLykLYk~V~~rGGydkVt~~KkWreVa~eLglP~t~TSas~~LK 223 (456)
++..+++..|+++|.+||+.||+++++|+|+|++||||+||++|+++|||++||.+++|++||+.||+|. ++++++.||
T Consensus 8 e~~~~~~~~Fl~~L~~F~~~rG~~l~~P~i~gk~lDLy~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~-~~~~~~~Lr 86 (122)
T 2eqy_A 8 EAQTRVKLNFLDQIAKYWELQGSTLKIPHVERKILDLFQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAP-GKAVGSHIR 86 (122)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHTCCCCCCBSSSSBCCHHHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCS-SSHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHcCCCCCCCeECCEeccHHHHHHHHHHccCHHHHcCCCcHHHHHHHhCCCC-CCcHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999999999999987 467899999
Q ss_pred HHHHHhHHHHHHhHhhcCCCCCCC
Q 012780 224 IFYEKALLEYEKHKRLSGELQLPA 247 (456)
Q Consensus 224 ~~YeKyLlpYE~~~~~~G~~~~P~ 247 (456)
++|+|||++||++.++.+....++
T Consensus 87 ~~Y~k~L~~yE~~~~~~~~~~~~~ 110 (122)
T 2eqy_A 87 GHYERILNPYNLFLSGDSLRCLQK 110 (122)
T ss_dssp HHHHHTHHHHHHHHHCCTTCCCCC
T ss_pred HHHHHHhHHHHHHHhcCCccccCC
Confidence 999999999999998766655444
No 3
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.94 E-value=2.1e-27 Score=201.31 Aligned_cols=96 Identities=24% Similarity=0.406 Sum_probs=91.4
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCCCCCCeeCCeeechhhHHHHHHhcCccchhccCcchhHhhhhcCCCCCCCcHHHHHH
Q 012780 144 EGTPEEQAEFMKEIESFYRENALEFKPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFR 223 (456)
Q Consensus 144 ~g~~eEre~Fl~~L~~FmeeRGtp~k~P~IgGK~LDLykLYk~V~~rGGydkVt~~KkWreVa~eLglP~t~TSas~~LK 223 (456)
++..+++..|+++|.+||+.+|+++++|.|+|++||||+||++|+++|||++||.+++|++||+.||+|.+ +++++.||
T Consensus 10 ~~~~~~~~~F~~~L~~F~~~~g~~l~~P~i~gk~vdL~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~-~~~~~~lk 88 (107)
T 2lm1_A 10 EAKTRVKLNFLDQIAKFWELQGSSLKIPMVERKALDLYTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSS-KSVGATLK 88 (107)
T ss_dssp CCSSHHHHHHHHHHHHHHTTTCCCCSCCCTTTSSCCHHHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCC-HHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHcCCCCCCCeECCEeecHHHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCC-CcHHHHHH
Confidence 47778999999999999999999999999999999999999999999999999999999999999999874 78999999
Q ss_pred HHHHHhHHHHHHhHhhc
Q 012780 224 IFYEKALLEYEKHKRLS 240 (456)
Q Consensus 224 ~~YeKyLlpYE~~~~~~ 240 (456)
++|++||++||++.++.
T Consensus 89 ~~Y~k~L~~yE~~~~~~ 105 (107)
T 2lm1_A 89 AHYERILHPFEVYTSGK 105 (107)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhHHHHHHHhcC
Confidence 99999999999998764
No 4
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=99.94 E-value=1.6e-27 Score=208.22 Aligned_cols=110 Identities=17% Similarity=0.320 Sum_probs=93.9
Q ss_pred ccccccccCC-CCCCChHHHHHHHHHHHHHHHhcCCCC-CCCeeCCeeechhhHHHHHHhcCccchhccCcchhHhhhhc
Q 012780 132 NWLNDIEMGE-ADEGTPEEQAEFMKEIESFYRENALEF-KPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVGESF 209 (456)
Q Consensus 132 ~~~~d~~~~~-~e~g~~eEre~Fl~~L~~FmeeRGtp~-k~P~IgGK~LDLykLYk~V~~rGGydkVt~~KkWreVa~eL 209 (456)
+..|.++++. ++.+...+++.|+++|.+||+.||+++ ++|.|+|++||||+||++|+++|||++||.+++|++||+.|
T Consensus 3 ~~~f~~r~Q~L~el~~~~~~~~Fl~~L~~F~~~rG~~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~l 82 (125)
T 2cxy_A 3 SGSSGEKITKVYELGNEPERKLWVDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNL 82 (125)
T ss_dssp ----CCBTTHHHHSCCCTTHHHHHHHHHHHHHHTTCCCCBCCEETTEECCHHHHHHHHHHHTSHHHHHHHTCHHHHHHHT
T ss_pred CCccccceeeHHhccCchhHHHHHHHHHHHHHHcCCCCCCCeeECCEeecHHHHHHHHHHcCCHHHhcccCcHHHHHHHh
Confidence 4566777776 332222356679999999999999999 89999999999999999999999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhHHHHHHhHhhcCC
Q 012780 210 HPPKTCTTVSWTFRIFYEKALLEYEKHKRLSGE 242 (456)
Q Consensus 210 glP~t~TSas~~LK~~YeKyLlpYE~~~~~~G~ 242 (456)
|+|. ++++++.||++|+|||++||+++....+
T Consensus 83 g~~~-~~s~~~~Lk~~Y~k~L~~yE~~~~~g~~ 114 (125)
T 2cxy_A 83 NVGT-SSSAASSLKKQYIQYLFAFECKIERGEE 114 (125)
T ss_dssp TSCS-SHHHHHHHHHHHHHHTHHHHHHHHHCCC
T ss_pred CCCC-CCcHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9986 5789999999999999999999876444
No 5
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=99.94 E-value=3.1e-27 Score=211.55 Aligned_cols=109 Identities=27% Similarity=0.530 Sum_probs=101.6
Q ss_pred cccccccccccCC-CC-CCChHHHHHHHHHHHHHHHhcCCCC-CCCeeCCeeechhhHHHHHHhcCccchhccCcchhHh
Q 012780 129 KSKNWLNDIEMGE-AD-EGTPEEQAEFMKEIESFYRENALEF-KPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQV 205 (456)
Q Consensus 129 ~~~~~~~d~~~~~-~e-~g~~eEre~Fl~~L~~FmeeRGtp~-k~P~IgGK~LDLykLYk~V~~rGGydkVt~~KkWreV 205 (456)
...+|.|.+.++. ++ ++.+ +++.|+++|.+||+.+|+|+ ++|.|+|++||||+||++|+++|||++||.+++|++|
T Consensus 13 ~~~~f~F~~r~q~L~eL~~~~-~~~~Fl~~L~~F~~~rG~pl~~~P~i~gk~vDL~~Ly~~V~~~GG~~~V~~~~~W~~V 91 (145)
T 2kk0_A 13 DHGDWTYEEQFKQLYELDGDP-KRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREI 91 (145)
T ss_dssp CTTSCCCCCCCTHHHHTTCCH-HHHHHHHHHHHHHHHTTCCCSSCCEETTEECCHHHHHHHHHHHTCHHHHHHHTCHHHH
T ss_pred CCCCceecCccccHhhccCch-hHHHHHHHHHHHHHHcCCCCccceeECCEEecHHHHHHHHHHhCCHHHhcccCcHHHH
Confidence 3468999999997 44 4555 49999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCCcHHHHHHHHHHHhHHHHHHhHh
Q 012780 206 GESFHPPKTCTTVSWTFRIFYEKALLEYEKHKR 238 (456)
Q Consensus 206 a~eLglP~t~TSas~~LK~~YeKyLlpYE~~~~ 238 (456)
|+.||+|.+++++++.||++|++||++||++.+
T Consensus 92 a~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~ 124 (145)
T 2kk0_A 92 TKGLNLPTSITSAAFTLRTQYMKYLYPYECEKR 124 (145)
T ss_dssp HHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHT
T ss_pred HHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999977
No 6
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=99.94 E-value=3.1e-27 Score=196.89 Aligned_cols=92 Identities=23% Similarity=0.386 Sum_probs=87.6
Q ss_pred ChHHHHHHHHHHHHHHHhcCCCCCCCeeCCeeechhhHHHHHHhcCccchhccCcchhHhhhhcCCCCCCCcHHHHHHHH
Q 012780 146 TPEEQAEFMKEIESFYRENALEFKPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIF 225 (456)
Q Consensus 146 ~~eEre~Fl~~L~~FmeeRGtp~k~P~IgGK~LDLykLYk~V~~rGGydkVt~~KkWreVa~eLglP~t~TSas~~LK~~ 225 (456)
..++++.|+++|.+||++||+++++|.|+|++||||+||++|+++|||++||++++|.+|++.||+|.++ ++++.||++
T Consensus 4 ~~r~~~~F~~~L~~F~~~~g~~l~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~-~~~~~Lk~~ 82 (96)
T 2jxj_A 4 GSRVRLDFLDQLAKFWELQGSTLKIPVVERKILDLYALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGK-GTGSLLKSH 82 (96)
T ss_dssp SSHHHHHHHHHHHHHHHHHTCCCCCCEETTEECCCHHHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCS-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCCCCCCCcCCCEeccHHHHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcC-cHHHHHHHH
Confidence 3578999999999999999999999999999999999999999999999999999999999999999866 688999999
Q ss_pred HHHhHHHHHHhHh
Q 012780 226 YEKALLEYEKHKR 238 (456)
Q Consensus 226 YeKyLlpYE~~~~ 238 (456)
|++||++||++.+
T Consensus 83 Y~k~L~~yE~~~~ 95 (96)
T 2jxj_A 83 YERILYPYELFQS 95 (96)
T ss_dssp HTTTTHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999975
No 7
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=99.93 E-value=7.5e-27 Score=202.11 Aligned_cols=97 Identities=21% Similarity=0.401 Sum_probs=91.8
Q ss_pred CChHHHHHHHHHHHHHHHhcCCCCCCCeeCCeeechhhHHHHHHhcCccchhccCcchhHhhhhcCCCCCCCcHHHHHHH
Q 012780 145 GTPEEQAEFMKEIESFYRENALEFKPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRI 224 (456)
Q Consensus 145 g~~eEre~Fl~~L~~FmeeRGtp~k~P~IgGK~LDLykLYk~V~~rGGydkVt~~KkWreVa~eLglP~t~TSas~~LK~ 224 (456)
+..+++..|+++|.+||+.||+|+++|+|+|++||||+||++|+++|||++||.+++|++||+.||+|.+ +++++.||+
T Consensus 7 ~~~r~~~~Fl~~L~~F~~~rG~~l~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~-~~a~~~Lk~ 85 (117)
T 2jrz_A 7 AQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPG-KNIGSLLRS 85 (117)
T ss_dssp TSTTTHHHHHHHHHHHHHTTTSCCCCCEETTEECCHHHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTT-CTHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHcCCCCCCCeECCEeecHHHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCC-CcHHHHHHH
Confidence 5667899999999999999999999999999999999999999999999999999999999999999977 789999999
Q ss_pred HHHHhHHHHHHhHhhcCC
Q 012780 225 FYEKALLEYEKHKRLSGE 242 (456)
Q Consensus 225 ~YeKyLlpYE~~~~~~G~ 242 (456)
+|+|||++||++.++...
T Consensus 86 ~Y~k~L~~yE~~~~~~~~ 103 (117)
T 2jrz_A 86 HYERIVYPYEMYQSGANL 103 (117)
T ss_dssp HHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCCc
Confidence 999999999999876544
No 8
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=99.93 E-value=8.9e-27 Score=204.05 Aligned_cols=89 Identities=21% Similarity=0.357 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHhcCCCC-CCCeeCCeeechhhHHHHHHhcCccchhccCcchhHhhhhcCCCCCCCcHHHHHHHHHHH
Q 012780 150 QAEFMKEIESFYRENALEF-KPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEK 228 (456)
Q Consensus 150 re~Fl~~L~~FmeeRGtp~-k~P~IgGK~LDLykLYk~V~~rGGydkVt~~KkWreVa~eLglP~t~TSas~~LK~~YeK 228 (456)
...|+++|.+||++||+|| ++|.|+|++||||+||+.|+++|||++||.+++|++||+.||+|.+|+++++.||.+|+|
T Consensus 13 ~~~Fl~~L~~F~~~rGtpl~~~P~i~gk~lDL~~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k 92 (121)
T 2rq5_A 13 NVQRLACIKKHLRSQGITMDELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQ 92 (121)
T ss_dssp HHHHHHHHHHHHHHTTCCCSSCCEETTEECCHHHHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHcCCCCCCCCcCCCEeccHHHHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHH
Confidence 4689999999999999999 799999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhHh
Q 012780 229 ALLEYEKHKR 238 (456)
Q Consensus 229 yLlpYE~~~~ 238 (456)
||++||++..
T Consensus 93 ~L~~YE~~~~ 102 (121)
T 2rq5_A 93 YLLSYDSLSP 102 (121)
T ss_dssp THHHHHHCCH
T ss_pred HhHHHHCcCH
Confidence 9999999744
No 9
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=99.93 E-value=1.7e-26 Score=202.21 Aligned_cols=93 Identities=27% Similarity=0.482 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHHHHHhcCCCC-CCCeeCCeeechhhHHHHHHhcCccchhccCcchhHhhhhcCCCCCCCcHHHHHHHH
Q 012780 147 PEEQAEFMKEIESFYRENALEF-KPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIF 225 (456)
Q Consensus 147 ~eEre~Fl~~L~~FmeeRGtp~-k~P~IgGK~LDLykLYk~V~~rGGydkVt~~KkWreVa~eLglP~t~TSas~~LK~~ 225 (456)
.++++.|++.|.+||+.+|+++ ++|.|+|++||||+||++|+++|||++||.+++|++||+.||+|.+++++++.||++
T Consensus 20 ~~~~~~Fl~~L~~F~~~rG~~l~~~P~i~gk~vDL~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~ 99 (128)
T 1c20_A 20 DPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQ 99 (128)
T ss_dssp CHHHHHHHHHHHHHHTTTSSCSSCCCEETTEECCHHHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCCCccceeECCEeecHHHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHH
Confidence 3799999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHhHhh
Q 012780 226 YEKALLEYEKHKRL 239 (456)
Q Consensus 226 YeKyLlpYE~~~~~ 239 (456)
|++||++||++.++
T Consensus 100 Y~k~L~~yE~~~~~ 113 (128)
T 1c20_A 100 YMKYLYPYECEKKN 113 (128)
T ss_dssp HHHHTHHHHHHHHC
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999874
No 10
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.5e-26 Score=199.73 Aligned_cols=101 Identities=21% Similarity=0.336 Sum_probs=94.2
Q ss_pred ccccccCC--CCCCChHHHHHHHHHHHHHHHhcCCCC-CCCeeCCeeechhhHHHHHHhcCccchhccCcchhHhhhhcC
Q 012780 134 LNDIEMGE--ADEGTPEEQAEFMKEIESFYRENALEF-KPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVGESFH 210 (456)
Q Consensus 134 ~~d~~~~~--~e~g~~eEre~Fl~~L~~FmeeRGtp~-k~P~IgGK~LDLykLYk~V~~rGGydkVt~~KkWreVa~eLg 210 (456)
-|+|+++. ..+...++++.|++.|.+||+.+|+++ ++|.|+|++||||+||++|+++|||++||.+++|++||+.||
T Consensus 2 ~~~pr~Q~ln~~e~~~~~~~~F~~~L~~F~~~~G~pl~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg 81 (116)
T 2li6_A 2 SLNPALQEKISTELNNKQYELFMKSLIENCKKRNMPLQSIPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWSMVAQRLQ 81 (116)
T ss_dssp CCCCCSSBCCCSSSSHHHHHHHHHHHHHHHHTTTSCCSSCCCCBSCCCSTTHHHHHHHHHTSHHHHHHTTCHHHHHHHHT
T ss_pred CCCchhhhhhcccccchhHHHHHHHHHHHHHHcCCCCCCCceECCEeecHHHHHHHHHHhcCHHHccccCcHHHHHHHhC
Confidence 36888887 336888999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHHHhHHHHHHhHhh
Q 012780 211 PPKTCTTVSWTFRIFYEKALLEYEKHKRL 239 (456)
Q Consensus 211 lP~t~TSas~~LK~~YeKyLlpYE~~~~~ 239 (456)
+|. ++.||.+|++||++||+++..
T Consensus 82 ~~~-----~~~Lr~~Y~k~L~~yE~~~~~ 105 (116)
T 2li6_A 82 ISD-----YQQLESIYFRILLPYERHMIS 105 (116)
T ss_dssp SCC-----TTHHHHHHHHHHSHHHHHHHH
T ss_pred CCh-----HHHHHHHHHHHHHHHHHHHhC
Confidence 986 579999999999999999764
No 11
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=99.91 E-value=3.2e-25 Score=194.19 Aligned_cols=90 Identities=21% Similarity=0.378 Sum_probs=85.1
Q ss_pred CChHHHHHHHHHHHHHHHhcCCCC-CCCeeCCeeechhhHHHHHHhcCccchhccCcchhHhhhhcCCCCCCCcHHHHHH
Q 012780 145 GTPEEQAEFMKEIESFYRENALEF-KPPKFYGEPLNCLKLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFR 223 (456)
Q Consensus 145 g~~eEre~Fl~~L~~FmeeRGtp~-k~P~IgGK~LDLykLYk~V~~rGGydkVt~~KkWreVa~eLglP~t~TSas~~LK 223 (456)
+..++++.|+++|.+||+++|+|+ ++|.|+|++||||+||++|+++|||++||.+++|++||+.||+|. ++.||
T Consensus 14 ~~~~~~~~Fl~~L~~F~~~rG~pl~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~-----~~~Lr 88 (123)
T 1kkx_A 14 SNNKQYELFMKSLIENCKKRNMPLQSIPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-----YQQLE 88 (123)
T ss_dssp -CCCHHHHHHHHHHHHHHHTTCSSSSCCCCSSSSCCTTHHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCC-----HHHHH
T ss_pred CcchhHHHHHHHHHHHHHHcCCCCCcCceECCEeecHHHHHHHHHHhcCHHhccccccHHHHHHHHCCCh-----HHHHH
Confidence 456789999999999999999999 999999999999999999999999999999999999999999986 78999
Q ss_pred HHHHHhHHHHHHhHhh
Q 012780 224 IFYEKALLEYEKHKRL 239 (456)
Q Consensus 224 ~~YeKyLlpYE~~~~~ 239 (456)
++|+|||++||++++.
T Consensus 89 ~~Y~k~L~~yE~~~~~ 104 (123)
T 1kkx_A 89 SIYFRILLPYERHMIS 104 (123)
T ss_dssp HHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999999753
No 12
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Probab=99.81 E-value=9.5e-20 Score=150.60 Aligned_cols=89 Identities=25% Similarity=0.381 Sum_probs=81.1
Q ss_pred CCc-ceeeeeccCCeEEEEEEcCCCCccceEEEecCCceEEEecccCCCCC---------CCCCCcceEEeeCCCCCCCC
Q 012780 351 ADW-VKINVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDN---------PWGITPFKKVVILPSRIDPL 420 (456)
Q Consensus 351 ad~-p~iNV~~T~d~~EVyA~vPGl~p~el~V~~d~~g~L~IsGer~~~~~---------~~~~~~FrRvv~LP~~vDp~ 420 (456)
|+| |++||.+|++.|.|.+.+||+++++|+|+++ ++.|+|+|+++.... ++..++|+|.|.||..||++
T Consensus 1 ~~~~P~~di~e~~~~~~v~~~lPG~~~edi~v~~~-~~~L~I~g~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~ 79 (100)
T 3gla_A 1 AQWVPRVDIKEEVNHFVLYADLPGIDPSQIEVQMD-KGILSIRGERKSESSTETERFSRIERRYGSFHRRFALPDSADAD 79 (100)
T ss_dssp CCSCCCEEEEECSSEEEEEEECTTSCGGGCEEEEE-TTEEEEEEEECCGGGSSGGGEEEECCCCEEEEEEEECCTTBCTT
T ss_pred CCccCcEEEEECCCEEEEEEECCCCCHHHEEEEEE-CCEEEEEEEEcCcCccCCccEEEEeecceEEEEEEECCCCcChH
Confidence 456 9999999999999999999999999999999 999999999876521 67788999999999999999
Q ss_pred CceeEEeeCcEEEEEecceee
Q 012780 421 QTSAVVSLHGRLYGLKLGERQ 441 (456)
Q Consensus 421 ~v~A~~~~~G~L~I~i~k~~~ 441 (456)
+++|.|+ ||+|+|++||.++
T Consensus 80 ~i~A~~~-~GvL~I~~pK~~~ 99 (100)
T 3gla_A 80 GITAAGR-NGVLEIRIPKRPA 99 (100)
T ss_dssp SCEEEEE-TTEEEEEEEBC--
T ss_pred HeEEEEe-CCEEEEEEecCCC
Confidence 9999999 9999999999875
No 13
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}
Probab=99.77 E-value=1e-18 Score=146.11 Aligned_cols=90 Identities=20% Similarity=0.298 Sum_probs=82.4
Q ss_pred Cc-ceeeeeccCCeEEEEEEcCCCCccceEEEecCCceEEEecccCCCC----CCCCCCcceEEeeCCCCCCCCCceeEE
Q 012780 352 DW-VKINVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVD----NPWGITPFKKVVILPSRIDPLQTSAVV 426 (456)
Q Consensus 352 d~-p~iNV~~T~d~~EVyA~vPGl~p~el~V~~d~~g~L~IsGer~~~~----~~~~~~~FrRvv~LP~~vDp~~v~A~~ 426 (456)
.| |++||.+++++|.|.+.+||+++++|+|+++ ++.|+|+|+++... .++..+.|+|.|.||..||+++++|.|
T Consensus 4 ~~~P~~di~e~~~~~~v~~~lPG~~~edi~v~~~-~~~L~I~g~~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~i~A~~ 82 (102)
T 4fei_A 4 PWTPAADWRDAGTHLDLLLDVPGVDAGTLALAED-GGQLTVSGERPGTEHLLRSERPSGRFVRELAFPEPVRPASGVASL 82 (102)
T ss_dssp ECCCCEEEEEETTEEEEEEECTTCCGGGCEEEEE-TTEEEEEEEECCCSSCSSCCSEEEEEEEEEECSSCBCTTCCEEEE
T ss_pred cccCcEEEEEcCCEEEEEEECCCCchHhEEEEEE-CCEEEEEEEEecCCCEEEEEEeccEEEEEEECCCCcchhHcEEEE
Confidence 45 8999999999999999999999999999999 99999999987643 256777999999999999999999999
Q ss_pred eeCcEEEEEecceeeee
Q 012780 427 SLHGRLYGLKLGERQIY 443 (456)
Q Consensus 427 ~~~G~L~I~i~k~~~~~ 443 (456)
. ||+|+|++||.+..-
T Consensus 83 ~-~GvL~I~lpK~~~~~ 98 (102)
T 4fei_A 83 A-GGVLTVRFEKLRPTI 98 (102)
T ss_dssp E-TTEEEEEEEBSSCCC
T ss_pred E-CCEEEEEEEccCccc
Confidence 9 999999999987654
No 14
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A
Probab=99.71 E-value=3.3e-17 Score=146.97 Aligned_cols=89 Identities=17% Similarity=0.247 Sum_probs=81.6
Q ss_pred CcceeeeeccCCeEEEEEEcCCCCccceEEEecCCceEEEecccCCCC---------CCC-CCCcceEEeeCCCCCCCCC
Q 012780 352 DWVKINVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVD---------NPW-GITPFKKVVILPSRIDPLQ 421 (456)
Q Consensus 352 d~p~iNV~~T~d~~EVyA~vPGl~p~el~V~~d~~g~L~IsGer~~~~---------~~~-~~~~FrRvv~LP~~vDp~~ 421 (456)
.|+.+||.+|+|.|.|.|.+||+++++|+|+++ ++.|+|+|+++... .++ ..+.|+|.|.||..||+++
T Consensus 55 ~~~pvdi~e~~~~~~v~~dlPG~~~edi~V~~~-~~~L~I~g~~~~~~~~~~~~~~~~Er~~~g~f~R~~~LP~~vd~~~ 133 (161)
T 4eld_A 55 GFMPISIIEGDQHIKVIAWLPGVNKEDIILNAV-GDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEEN 133 (161)
T ss_dssp SCCCEEEEECSSEEEEEEECTTCCGGGEEEEEE-TTEEEEEEECCCCCCCSSCEEEEECSCCCCEEEEEEECSSCBCGGG
T ss_pred cccceeEEEeCCEEEEEEECCCCChHhEEEEEE-CCEEEEEEEEcccccCCCceEEEEEeeccccEEEEEECCCCccccc
Confidence 476699999999999999999999999999999 89999999988741 156 7889999999999999999
Q ss_pred ceeEEeeCcEEEEEecceeee
Q 012780 422 TSAVVSLHGRLYGLKLGERQI 442 (456)
Q Consensus 422 v~A~~~~~G~L~I~i~k~~~~ 442 (456)
++|.|. ||+|+|+|||.+..
T Consensus 134 i~A~~~-nGvL~I~lpK~~~~ 153 (161)
T 4eld_A 134 ASAKFE-NGVLSVILPKAESS 153 (161)
T ss_dssp CEEEEE-TTEEEEEEEBCGGG
T ss_pred EEEEEE-CCEEEEEEEcCCCC
Confidence 999999 99999999998754
No 15
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Probab=99.71 E-value=3.6e-17 Score=140.60 Aligned_cols=88 Identities=18% Similarity=0.177 Sum_probs=80.5
Q ss_pred CcceeeeeccCCeEEEEEEcCCCCccceEEEecCC-ceEEEecccCCCC------CCCCCCcceEEeeCCCCCCCCCc-e
Q 012780 352 DWVKINVREAKDCYEVYALVPGLLREEVRVQSDPA-GRLVITGEPEQVD------NPWGITPFKKVVILPSRIDPLQT-S 423 (456)
Q Consensus 352 d~p~iNV~~T~d~~EVyA~vPGl~p~el~V~~d~~-g~L~IsGer~~~~------~~~~~~~FrRvv~LP~~vDp~~v-~ 423 (456)
.||.+||.+|++.|.|.+.+||+++++|+|+++ + +.|+|+|+++... .++.. .|+|.|.||..||++++ +
T Consensus 23 ~~P~~di~e~~~~~~v~~~lPG~~~edi~V~v~-~~~~L~I~g~~~~~~~~~~~~~Er~~-~f~R~~~LP~~vd~~~i~~ 100 (123)
T 3aab_A 23 VYPPVDMYEEGGYLVVVADLAGFNKEKIKARVS-GQNELIIEAEREITEPGVKYLTQRPK-YVRKVIRLPYNVAKDAEIS 100 (123)
T ss_dssp HCSCEEEEEETTEEEEEEECCSCCGGGCEEEEE-TTTEEEEEEECCCCCCSCEEEECSCS-EEEEEEECSSEECTTCCCE
T ss_pred CCCcEEEEEcCCEEEEEEECCCCCHHHEEEEEe-CCCEEEEEEEEeccCCCeEEEEEEeE-EEEEEEECCCCcCcchhCe
Confidence 468999999999999999999999999999999 7 9999999987753 14566 99999999999999999 9
Q ss_pred eEEeeCcEEEEEecceeee
Q 012780 424 AVVSLHGRLYGLKLGERQI 442 (456)
Q Consensus 424 A~~~~~G~L~I~i~k~~~~ 442 (456)
|.|. ||+|+|++||.+..
T Consensus 101 A~~~-~GvL~I~lPK~~~~ 118 (123)
T 3aab_A 101 GKYE-NGVLTIRIPIAGTS 118 (123)
T ss_dssp EEEE-TTEEEEEEEGGGEE
T ss_pred eEEc-CCEEEEEEEcCCCC
Confidence 9999 99999999998753
No 16
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Probab=99.69 E-value=4.4e-17 Score=132.70 Aligned_cols=81 Identities=23% Similarity=0.256 Sum_probs=70.4
Q ss_pred eeccCCeEEEEEEcCCCCccceEEEecCCceEEEecccCCCCC--CCCCCcceEEeeCCCCCCCCCceeEEeeCcEEEEE
Q 012780 358 VREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDN--PWGITPFKKVVILPSRIDPLQTSAVVSLHGRLYGL 435 (456)
Q Consensus 358 V~~T~d~~EVyA~vPGl~p~el~V~~d~~g~L~IsGer~~~~~--~~~~~~FrRvv~LP~~vDp~~v~A~~~~~G~L~I~ 435 (456)
+.+|++.|.|.|.+||+++++|+|+++ +|.|+|+|+++.... .+..+.|+|.|.||..||+++++|.|.-||+|+|+
T Consensus 2 ~~E~~~~~~v~~dlPG~~~edi~V~v~-~~~L~I~g~~~~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~~~~~GvL~I~ 80 (85)
T 3q9p_A 2 GSHTADRWRVSLDVNHFAPDELTVKTK-DGVVEITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLTVE 80 (85)
T ss_dssp -CCCCCEEEEEEECTTTCCSEEEEEEE-TTEEEEEEEEC-------CCCEEEEEEEECCTTCCGGGCEEEECTTSEEEEE
T ss_pred ccCcCCEEEEEEECCCCChHHEEEEEE-CCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChHHcEEEECCCCEEEEE
Confidence 468999999999999999999999999 999999999876532 34456999999999999999999999669999999
Q ss_pred ecce
Q 012780 436 KLGE 439 (456)
Q Consensus 436 i~k~ 439 (456)
+||.
T Consensus 81 lPK~ 84 (85)
T 3q9p_A 81 APMP 84 (85)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9985
No 17
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Probab=99.68 E-value=1.4e-16 Score=142.25 Aligned_cols=89 Identities=19% Similarity=0.197 Sum_probs=80.8
Q ss_pred cceeeeeccCCeEEEEEEcCCCCccceEEEecCCceEEEecccCCCC---------CCCCCCcceEEeeCCCCCCCCCce
Q 012780 353 WVKINVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVD---------NPWGITPFKKVVILPSRIDPLQTS 423 (456)
Q Consensus 353 ~p~iNV~~T~d~~EVyA~vPGl~p~el~V~~d~~g~L~IsGer~~~~---------~~~~~~~FrRvv~LP~~vDp~~v~ 423 (456)
.|++||.+|+++|.|.+.+||+++++|+|+++.++.|+|+|+++... .++..+.|+|.|.||..||+++++
T Consensus 43 ~p~~di~e~~d~~~v~~dlPGv~kedI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i~ 122 (151)
T 1gme_A 43 NARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVK 122 (151)
T ss_dssp GGCEEEEECSSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGCE
T ss_pred CCceEEEEcCCEEEEEEECCCCChHHEEEEEecCCEEEEEEEEccccccCCceEEEEeEeccEEEEEEECCCCccccceE
Confidence 48999999999999999999999999999994278999999988752 157788999999999999999999
Q ss_pred eEEeeCcEEEEEecceeee
Q 012780 424 AVVSLHGRLYGLKLGERQI 442 (456)
Q Consensus 424 A~~~~~G~L~I~i~k~~~~ 442 (456)
|.|. ||+|+|+|||.+..
T Consensus 123 A~~~-nGvL~I~lPK~~~~ 140 (151)
T 1gme_A 123 AGLE-NGVLTVTVPKAEVK 140 (151)
T ss_dssp EEEE-TTEEEEEEECCCCC
T ss_pred EEEE-CCEEEEEEEccCcC
Confidence 9999 99999999998754
No 18
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}
Probab=99.67 E-value=8e-17 Score=134.95 Aligned_cols=85 Identities=16% Similarity=0.196 Sum_probs=76.2
Q ss_pred eeeeccCCeEEEEEEcCCCCccceEEEecCCceEEEecccCCCC--CCCCCCcceEEeeCCCCCCCCCceeEE-eeCcEE
Q 012780 356 INVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVD--NPWGITPFKKVVILPSRIDPLQTSAVV-SLHGRL 432 (456)
Q Consensus 356 iNV~~T~d~~EVyA~vPGl~p~el~V~~d~~g~L~IsGer~~~~--~~~~~~~FrRvv~LP~~vDp~~v~A~~-~~~G~L 432 (456)
+||.+|++.|.|.+.+||+++++|+|+++ +|.|+|+|+++... ..+....|+|.|.||..||+++++|.| . ||+|
T Consensus 4 vdi~e~~~~~~v~~dlPG~~~edI~V~v~-~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~-nGvL 81 (101)
T 2wj5_A 4 AQVPTDPGYFSVLLDVKHFSPEEISVKVV-GDHVEVHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTSALSP-EGVL 81 (101)
T ss_dssp CCCCCCSSCEEEEEECTTSCGGGEEEEEE-TTEEEEEEEEEECSSTTCCEEEEEEEEEECCTTBCTTCCEEEECT-TSEE
T ss_pred EEEEEeCCEEEEEEECCCCcHHHeEEEEE-CCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHCEEEECC-CCEE
Confidence 78999999999999999999999999999 99999999987642 233344699999999999999999999 7 9999
Q ss_pred EEEecceeee
Q 012780 433 YGLKLGERQI 442 (456)
Q Consensus 433 ~I~i~k~~~~ 442 (456)
+|++||.+..
T Consensus 82 ~I~lPK~~~~ 91 (101)
T 2wj5_A 82 SIQATPASAQ 91 (101)
T ss_dssp EEEECBCCCC
T ss_pred EEEEECCCcC
Confidence 9999997653
No 19
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Probab=99.67 E-value=7.8e-17 Score=136.28 Aligned_cols=85 Identities=19% Similarity=0.204 Sum_probs=76.3
Q ss_pred eeeeccCCeEEEEEEcCCCCccceEEEecCCceEEEecccCCCC--CCCCCCcceEEeeCCCCCCCCCceeEE-eeCcEE
Q 012780 356 INVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVD--NPWGITPFKKVVILPSRIDPLQTSAVV-SLHGRL 432 (456)
Q Consensus 356 iNV~~T~d~~EVyA~vPGl~p~el~V~~d~~g~L~IsGer~~~~--~~~~~~~FrRvv~LP~~vDp~~v~A~~-~~~G~L 432 (456)
.+|.+|+++|.|.|.+||+++++|+|+++ +|.|+|+|+++... ..+....|+|.|.||..||+++++|.| . ||+|
T Consensus 5 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~-~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~-~GvL 82 (106)
T 3l1e_A 5 SEVRSDRDKFVIFLDVKHFSPEDLTVKVQ-EDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSA-DGML 82 (106)
T ss_dssp EEEEECSSEEEEEEECTTSCGGGEEEEEE-TTEEEEEEEEEEEETTTEEEEEEEEEEEECCTTBCTTSCEEEECT-TSEE
T ss_pred eEEEEcCCEEEEEEECCCCChHHEEEEEE-CCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChhHcEEEECC-CCEE
Confidence 68999999999999999999999999999 89999999976442 223345799999999999999999999 7 9999
Q ss_pred EEEecceeee
Q 012780 433 YGLKLGERQI 442 (456)
Q Consensus 433 ~I~i~k~~~~ 442 (456)
+|++||.+..
T Consensus 83 ~I~~PK~~~~ 92 (106)
T 3l1e_A 83 TFSGPKIPSG 92 (106)
T ss_dssp EEEEEBCCCC
T ss_pred EEEEEccCcc
Confidence 9999998875
No 20
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Probab=99.61 E-value=5.5e-16 Score=127.05 Aligned_cols=81 Identities=21% Similarity=0.263 Sum_probs=67.6
Q ss_pred ccCCeEEEEEEcCCCCccceEEEecCCceEEEecccCCCC--CCCCCCcceEEeeCCCCCCCCCceeEE-eeCcEEEEEe
Q 012780 360 EAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVD--NPWGITPFKKVVILPSRIDPLQTSAVV-SLHGRLYGLK 436 (456)
Q Consensus 360 ~T~d~~EVyA~vPGl~p~el~V~~d~~g~L~IsGer~~~~--~~~~~~~FrRvv~LP~~vDp~~v~A~~-~~~G~L~I~i 436 (456)
.|++.|.|.+.+||+++++|+|+++ ++.|+|+|+++... ..+....|+|.|.||..||+++++|.| . ||+|+|++
T Consensus 3 ~~~~~~~v~~dlPG~~~edi~V~v~-~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~-~GvL~I~~ 80 (90)
T 2y1y_A 3 MEKDRFSVNLDVKHFSPEELKVKVL-GDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSMSS-DGVLTVNG 80 (90)
T ss_dssp ---CCEEEEEECTTSCGGGEEEEEE-TTEEEEEEEEEEEECSSSEEEEEEEEEEECCTTBCGGGCEEEECT-TSEEEEEE
T ss_pred cCCCEEEEEEECCCCcHHHeEEEEE-CCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHcEEEECC-CCEEEEEE
Confidence 5889999999999999999999999 89999999987542 223334799999999999999999999 8 99999999
Q ss_pred cceeee
Q 012780 437 LGERQI 442 (456)
Q Consensus 437 ~k~~~~ 442 (456)
||.+..
T Consensus 81 pK~~~~ 86 (90)
T 2y1y_A 81 PRKQVS 86 (90)
T ss_dssp CBC---
T ss_pred EcCCCC
Confidence 998653
No 21
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}
Probab=99.55 E-value=8.4e-15 Score=145.60 Aligned_cols=91 Identities=16% Similarity=0.201 Sum_probs=84.0
Q ss_pred cceeeeeccCC----eEEEEEEcCCCCccceEEEecCCceEEEecccCCC-CCCCCCCcceEEeeCCCCCCCCCceeEEe
Q 012780 353 WVKINVREAKD----CYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQV-DNPWGITPFKKVVILPSRIDPLQTSAVVS 427 (456)
Q Consensus 353 ~p~iNV~~T~d----~~EVyA~vPGl~p~el~V~~d~~g~L~IsGer~~~-~~~~~~~~FrRvv~LP~~vDp~~v~A~~~ 427 (456)
+|++||.++++ .|.|.|.+||+++++|+|+++ +|.|+|+|+++.. +..+..+.|+|.|.||..||+++|+|.|+
T Consensus 98 ~p~vDi~E~~~dgk~~~~v~~dlPG~~~edI~V~v~-~~~L~I~ge~~~~~e~~r~~g~F~R~~~LP~~Vd~e~i~A~~~ 176 (314)
T 2bol_A 98 DFLKDAYEVGKDGRLHFKVYFNVKNFKAEEITIKAD-KNKLVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQATIT 176 (314)
T ss_dssp GGGGGCEEECTTSSEEEEEEEECTTCCTTTEEEEEE-TTEEEEEECCBSSTTCCCBCCCEEEEEECCTTBCGGGCEEEEC
T ss_pred CCccceEEcCCCCceEEEEEEECCCCchHHeEEEEE-CCEEEEEEEEeccCCCCEEEEEEEEEEECCCCccccccEEEEe
Confidence 48999999999 999999999999999999999 9999999998865 34577889999999999999999999998
Q ss_pred eCcEEEEEecceeeeec
Q 012780 428 LHGRLYGLKLGERQIYE 444 (456)
Q Consensus 428 ~~G~L~I~i~k~~~~~~ 444 (456)
-||||+|++||.+..+.
T Consensus 177 ~nGVL~I~lPK~~~~~~ 193 (314)
T 2bol_A 177 TDDVLVIEAPVNEPNYK 193 (314)
T ss_dssp SSSEEEEEEEBSSCCTT
T ss_pred CCCEEEEEEeccCcccc
Confidence 89999999999887654
No 22
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A
Probab=99.54 E-value=4.7e-15 Score=136.29 Aligned_cols=85 Identities=21% Similarity=0.273 Sum_probs=71.2
Q ss_pred eeeeccCCeEEEEEEcCCCCccceEEEecCCceEEEecccCCCCC--CCCCCcceEEeeCCCCCCCCCceeEE-eeCcEE
Q 012780 356 INVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDN--PWGITPFKKVVILPSRIDPLQTSAVV-SLHGRL 432 (456)
Q Consensus 356 iNV~~T~d~~EVyA~vPGl~p~el~V~~d~~g~L~IsGer~~~~~--~~~~~~FrRvv~LP~~vDp~~v~A~~-~~~G~L 432 (456)
+||.+|++.|.|.+.+||+++++|+|+++ +|.|+|+|+++.... .+-...|+|.|.||..||+++++|.| . ||+|
T Consensus 66 ~dv~e~~d~~~v~~dlPG~~~edI~V~v~-~~~L~I~g~~~~~~~~~~~~~reF~R~~~LP~~Vd~~~i~A~~s~-dGvL 143 (175)
T 2klr_A 66 SEMRLEKDRFSVNLDVKHFSPEELKVKVL-GDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSS-DGVL 143 (175)
T ss_dssp ---CCCCSEEEEEECCSSCCGGGEEEEEE-TTEEEEEEEEEEEEETTEEEEEEEEEEEECTTTCCTTTCEEEECT-TSCE
T ss_pred eEEEEcCCeEEEEEECCCCChHHEEEEEE-CCEEEEEEEEcccccCCceEEEEEEEEEECCCCcChhHeEEEEcC-CCEE
Confidence 68999999999999999999999999999 999999999865422 22223699999999999999999999 7 9999
Q ss_pred EEEecceeee
Q 012780 433 YGLKLGERQI 442 (456)
Q Consensus 433 ~I~i~k~~~~ 442 (456)
+|++||.+..
T Consensus 144 ~I~lPK~~~~ 153 (175)
T 2klr_A 144 TVNGPRKQVS 153 (175)
T ss_dssp EEEEECC---
T ss_pred EEEEECCCCC
Confidence 9999997654
No 23
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}
Probab=99.53 E-value=8.1e-15 Score=145.72 Aligned_cols=78 Identities=15% Similarity=0.184 Sum_probs=67.4
Q ss_pred ccCCeEEEEEEc-CCCCccceEEEecCCceEEEecccCCCC-----CCCCCCcceEEeeCCCCCCCCCceeEEeeCcEEE
Q 012780 360 EAKDCYEVYALV-PGLLREEVRVQSDPAGRLVITGEPEQVD-----NPWGITPFKKVVILPSRIDPLQTSAVVSLHGRLY 433 (456)
Q Consensus 360 ~T~d~~EVyA~v-PGl~p~el~V~~d~~g~L~IsGer~~~~-----~~~~~~~FrRvv~LP~~vDp~~v~A~~~~~G~L~ 433 (456)
++++.|.|.|.+ ||++|++|+|+++ +|.|||+|+|+... .++..+.|+|+|+||..||+++|+|.|. ||||+
T Consensus 230 ~~~~~~~v~~~ldPG~~~edi~V~v~-~~~LtI~ge~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i~A~~~-dGvL~ 307 (314)
T 2bol_A 230 DGSKKIHLELKVDPHFAPKDVKVWAK-GNKVYVHGVTGKEEKTENASHSEHREFYKAFVTPEVVDASKTQAEIV-DGLMV 307 (314)
T ss_dssp TSCEEEEEEEECCTTCCGGGEEEEES-SSEEEEEEEEC------------CEEEEEEEECSSEECGGGCEEEEE-TTEEE
T ss_pred CCCcEEEEEEEcCCCCChHHeEEEEE-CCEEEEEEEEeccCCceEEEEEeeeEEEEEEECCCCcChHHeEEEEe-CCEEE
Confidence 456799999999 9999999999999 99999999998763 2888999999999999999999999999 99999
Q ss_pred EEecce
Q 012780 434 GLKLGE 439 (456)
Q Consensus 434 I~i~k~ 439 (456)
|++||-
T Consensus 308 i~~Pk~ 313 (314)
T 2bol_A 308 VEAPLF 313 (314)
T ss_dssp EEEEEE
T ss_pred EEEecC
Confidence 999973
No 24
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Probab=98.40 E-value=1.3e-06 Score=70.26 Aligned_cols=85 Identities=13% Similarity=0.065 Sum_probs=74.1
Q ss_pred ceeeeeccCCeEEEEEEcCCCCccceEEEecCCceEEEecccCCCCCCCCCCcceEEeeCCCCCCCCCceeEEeeCcEEE
Q 012780 354 VKINVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSAVVSLHGRLY 433 (456)
Q Consensus 354 p~iNV~~T~d~~EVyA~vPGl~p~el~V~~d~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~vDp~~v~A~~~~~G~L~ 433 (456)
|++.-..|.+.+.|++++||+.++++.|.+. .+.|+|++... .-..|...+.|+..|||+..++.+. +|.|.
T Consensus 3 ~~~~W~Qt~~~V~v~i~~~~v~~~~v~v~~~-~~~l~v~~~~~------~~~~y~~~~~L~~~I~~~~s~~~~~-~~~l~ 74 (92)
T 2xcm_C 3 YRHEYYQKPEEVVVTVFAKGIPKQNVNIDFG-EQILSVVIEVP------GEDAYYLQPRLFGKIIPDKCKYEVL-STKIE 74 (92)
T ss_dssp SEEEEEEETTEEEEEEECCSCCGGGEEEEEC-SSBEEEEECCT------TSCCEEECCBBSSCBCGGGCEEEEC-SSCEE
T ss_pred ccccEEeCCCEEEEEEEECCCChHHeEEEEE-CCEEEEEEEcC------CCcEEEEeeEcCCccCchhEEEEEE-CCEEE
Confidence 5677889999999999999999999999999 78899998632 1247999999999999999999999 99999
Q ss_pred EEecceeeeecCCCcce
Q 012780 434 GLKLGERQIYEGRDWNY 450 (456)
Q Consensus 434 I~i~k~~~~~~~~~~~~ 450 (456)
|++.|.+. + -|..
T Consensus 75 i~L~K~~~---~-~W~~ 87 (92)
T 2xcm_C 75 ICLAKADI---I-TWAS 87 (92)
T ss_dssp EEEEBSSS---C-CCSC
T ss_pred EEEEcCCC---C-cchh
Confidence 99999864 3 6764
No 25
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3
Probab=98.36 E-value=1.3e-06 Score=73.44 Aligned_cols=85 Identities=12% Similarity=0.079 Sum_probs=74.3
Q ss_pred ceeeeeccCCeEEEEEEcCCCCccceEEEecCCceEEEecccCCCCCCCCCCcceEEeeCCCCCCCCCceeEEeeCcEEE
Q 012780 354 VKINVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSAVVSLHGRLY 433 (456)
Q Consensus 354 p~iNV~~T~d~~EVyA~vPGl~p~el~V~~d~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~vDp~~v~A~~~~~G~L~ 433 (456)
|++....|.+.+.|++.+||+.++++.|.+. ...|+|++... +-..|...+.|+..|||+..++.+. +|.|.
T Consensus 10 ~~~~W~Qt~~~V~v~i~l~~v~~~~v~v~~~-~~~l~v~~~~~------~~~~y~~~~~L~~~I~~e~s~~~~~-~~~l~ 81 (114)
T 1rl1_A 10 IKYDWYQTESQVVITLMIKNVQKNDVNVEFS-EKELSALVKLP------SGEDYNLKLELLHPIIPEQSTFKVL-STKIE 81 (114)
T ss_dssp CCEEEEECSSEEEEEECCCSCCGGGEEEECS-SSCEEEEEECT------TSSEEEEEECBSSCCCGGGEEEEEC-SSSEE
T ss_pred CCccEEeCCCEEEEEEEeCCCCHHHCEEEEE-cCEEEEEEEeC------CCcEEEEEeeCCCcCCccccEEEEE-CCEEE
Confidence 5577899999999999999999999999999 78899998632 2247999999999999999999999 99999
Q ss_pred EEecceeeeecCCCcce
Q 012780 434 GLKLGERQIYEGRDWNY 450 (456)
Q Consensus 434 I~i~k~~~~~~~~~~~~ 450 (456)
|++.|.+. + -|..
T Consensus 82 i~L~K~~~---~-~W~~ 94 (114)
T 1rl1_A 82 IKLKKPEA---V-RWEK 94 (114)
T ss_dssp EEEECSSC---C-CCSS
T ss_pred EEEEcCCC---C-cCcc
Confidence 99999864 3 5754
No 26
>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.29 E-value=0.032 Score=47.93 Aligned_cols=87 Identities=15% Similarity=0.192 Sum_probs=71.1
Q ss_pred cceeeeeccCCeEEEEEEcCCC---CccceEEEecCCceEEEecccCCCCCCCCCCcceEEee-CCCCCCCCCceeEEee
Q 012780 353 WVKINVREAKDCYEVYALVPGL---LREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVI-LPSRIDPLQTSAVVSL 428 (456)
Q Consensus 353 ~p~iNV~~T~d~~EVyA~vPGl---~p~el~V~~d~~g~L~IsGer~~~~~~~~~~~FrRvv~-LP~~vDp~~v~A~~~~ 428 (456)
.+++.=..|.+.+.|+.++||+ .++++.|.+. ...|.|+..-. + -..|.-.+. |-..|||++-...+.
T Consensus 20 ~~~y~W~Qt~~~V~i~I~l~~~~~~~~~~v~V~~~-~~~l~v~~~~~--~----~~~y~~~~~~L~~~I~~e~S~~~v~- 91 (127)
T 1x5m_A 20 ISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFT-ERSFDLLVKNL--N----GKSYSMIVNNLLKPISVEGSSKKVK- 91 (127)
T ss_dssp CCSCEEEEETTEEEEEEECTTTTTSCTTSEEEEEC-SSEEEEEECSC--S----SSCEEEEEECBSSCCCTTTCEEEEE-
T ss_pred ccEEEEEcCCCEEEEEEEeCCCCcCCccccEEEEE-cCEEEEEEEcC--C----CCcEEEEhHHhcCccCcccCEEEEe-
Confidence 4566678899999999999999 8999999999 77899976411 1 136888885 999999999999998
Q ss_pred CcEEEEEecceeeeecCCCcce
Q 012780 429 HGRLYGLKLGERQIYEGRDWNY 450 (456)
Q Consensus 429 ~G~L~I~i~k~~~~~~~~~~~~ 450 (456)
.+.+.|++.|.+. |.-|..
T Consensus 92 ~~kVei~L~K~~~---~~~W~~ 110 (127)
T 1x5m_A 92 TDTVLILCRKKVE---NTRWDY 110 (127)
T ss_dssp TTEEEEEEECSSS---SCCCSS
T ss_pred CCEEEEEEEECCC---CCCCCc
Confidence 9999999999863 446764
No 27
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4
Probab=96.27 E-value=0.025 Score=48.74 Aligned_cols=90 Identities=11% Similarity=0.029 Sum_probs=72.7
Q ss_pred cCCCCcceeeeeccCCeEEEEEEcC-C--CCccceEEEecCCceEEEecccCCCCCCCCCCcceEEeeCCCCCCCCCcee
Q 012780 348 GPPADWVKINVREAKDCYEVYALVP-G--LLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSA 424 (456)
Q Consensus 348 g~~ad~p~iNV~~T~d~~EVyA~vP-G--l~p~el~V~~d~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~vDp~~v~A 424 (456)
|--|+.|.+-=..|.+.+.|+..+| | +.+++|.|.+. ...|.|+.. .. .++ =...|...|+|+.-.-
T Consensus 2 ~ng~~~~~y~W~Qt~~~V~i~I~lp~~~~~~~kdv~V~i~-~~~l~v~~k----g~----~~~-~~~~L~~~I~~e~s~w 71 (131)
T 1wfi_A 2 SSGSSGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQ-RRHLRVGLK----GQ----PPV-VDGELYNEVKVEESSW 71 (131)
T ss_dssp CCSSSCCSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEE-TTEEEEEET----TS----CCS-BCSCBSSCBCSTTCEE
T ss_pred CCCCCCCcEEEEecCCEEEEEEECCCCCcccccceEEEEe-CCEEEEEEC----Cc----eEE-EecccccccccccCEE
Confidence 6678888899999999999999999 6 89999999999 888888764 11 111 2457899999999999
Q ss_pred EEeeCc-EEEEEecceeeeecCCCccee
Q 012780 425 VVSLHG-RLYGLKLGERQIYEGRDWNYV 451 (456)
Q Consensus 425 ~~~~~G-~L~I~i~k~~~~~~~~~~~~~ 451 (456)
.+. +| +|.|.+.|... +.-|..+
T Consensus 72 ~i~-~~k~v~i~L~K~~~---~~~W~~L 95 (131)
T 1wfi_A 72 LIE-DGKVVTVHLEKINK---MEWWNRL 95 (131)
T ss_dssp EEE-TTTEEEEEEEBSSS---CCCCSCS
T ss_pred EEc-CCCEEEEEEEECCC---CCCChhh
Confidence 998 88 89999999863 4457653
No 28
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A
Probab=95.89 E-value=0.061 Score=46.05 Aligned_cols=93 Identities=13% Similarity=0.063 Sum_probs=74.3
Q ss_pred eeccCCCCcceeeeeccCCeEEEEEEcC-C--CCccceEEEecCCceEEEecccCCCCCCCCCCcceEEeeCCCCCCCCC
Q 012780 345 VDVGPPADWVKINVREAKDCYEVYALVP-G--LLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQ 421 (456)
Q Consensus 345 ~d~g~~ad~p~iNV~~T~d~~EVyA~vP-G--l~p~el~V~~d~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~vDp~~ 421 (456)
-+.|--|+.|.+-=..|.+.++|+..+| | +..++|.|.+. ...|.|... +. ++-=...|...|+++.
T Consensus 8 p~~~nG~~~~~y~W~Qt~~eV~v~V~lp~~~~~~~kdv~V~i~-~~~l~v~~k--------g~-~~~~~g~L~~~I~~de 77 (121)
T 3qor_A 8 PNLGNGADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQ-RRHLRVGLK--------GQ-PAIIDGELYNEVKVEE 77 (121)
T ss_dssp CCTTSSCBCSSCEEEECSSEEEEEEECCCSSCCCGGGEEEEEE-TTEEEEEET--------TS-CCSEEEEBSSCBCGGG
T ss_pred CcCCCCCcCCCEEEEEccceEEEEEECCCCCcccccceEEEEE-cCEEEEEEc--------Cc-ceEEeccccccccccc
Confidence 3567788999999999999999999888 4 89999999999 567777543 11 1223568999999999
Q ss_pred ceeEEeeCc-EEEEEecceeeeecCCCccee
Q 012780 422 TSAVVSLHG-RLYGLKLGERQIYEGRDWNYV 451 (456)
Q Consensus 422 v~A~~~~~G-~L~I~i~k~~~~~~~~~~~~~ 451 (456)
-.-.+. +| +|.|.+.|.+. |.-|..+
T Consensus 78 S~w~i~-~~~~i~i~L~K~~~---~~~W~~L 104 (121)
T 3qor_A 78 SSWLIA-DGAVVTVHLEKINK---MEWWSRL 104 (121)
T ss_dssp CEEEEE-TTTEEEEEEEBSSS---SCCCSCS
T ss_pred cEEEEc-CCCEEEEEEEECCC---CCCChhh
Confidence 999998 88 99999999753 5567654
No 29
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3
Probab=95.85 E-value=0.028 Score=49.56 Aligned_cols=93 Identities=20% Similarity=0.216 Sum_probs=72.3
Q ss_pred cceeeeecc-CCeEEEEEEcCCCCccceEEEecCCceEEEecccCCCC-----CCCC-CCcceEEeeCCCCCCCCCceeE
Q 012780 353 WVKINVREA-KDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVD-----NPWG-ITPFKKVVILPSRIDPLQTSAV 425 (456)
Q Consensus 353 ~p~iNV~~T-~d~~EVyA~vPGl~p~el~V~~d~~g~L~IsGer~~~~-----~~~~-~~~FrRvv~LP~~vDp~~v~A~ 425 (456)
++++.=..| .+.+.|+.+++++.++++.|.+. ...|+|+..-.... ..++ ...|.-.+.|-..|||++-..+
T Consensus 19 ~~r~~W~Qt~~~~V~vtI~~k~v~~~~v~V~f~-~~~l~v~~~~~~~~~l~~~~a~g~~~~y~~~~~L~~~I~pe~S~~~ 97 (134)
T 1wh0_A 19 FVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFR-EQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLIEPEQCTFC 97 (134)
T ss_dssp CCCEEEEEETTTEEEEEEECCSBCTTSCEEEEC-SSEEEEEECBCCHHHHHHSTTCCTTSCEEEEEEBSSCEEEEEEEEE
T ss_pred CCCeEEEcCCCCEEEEEEEeCCCCcccCEEEEE-CCEEEEEEEcCCCcccccccccCcceeEEEeccccccCCchhCEEE
Confidence 456677889 99999999999999999999999 77889876411100 0011 1278888899999999999999
Q ss_pred EeeCcEEEEEecceeeeecCCCccee
Q 012780 426 VSLHGRLYGLKLGERQIYEGRDWNYV 451 (456)
Q Consensus 426 ~~~~G~L~I~i~k~~~~~~~~~~~~~ 451 (456)
+. ...+.|++.|++ +.-|..+
T Consensus 98 v~-~~kIeI~L~K~e----~~~W~~L 118 (134)
T 1wh0_A 98 FT-ASRIDICLRKRQ----SQRWGGL 118 (134)
T ss_dssp EC-SSEEEEEEEESS----SCCCSCS
T ss_pred Ee-CCEEEEEEEECC----CCccccc
Confidence 98 999999999985 3467643
No 30
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4
Probab=95.61 E-value=0.066 Score=45.79 Aligned_cols=94 Identities=16% Similarity=0.066 Sum_probs=73.9
Q ss_pred eccCCCCcceeeeeccCCeEEEEEEcC-CC-CccceEEEecCCceEEEecccCCCCCCCCCCcceEEeeCCCCCCCCCce
Q 012780 346 DVGPPADWVKINVREAKDCYEVYALVP-GL-LREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTS 423 (456)
Q Consensus 346 d~g~~ad~p~iNV~~T~d~~EVyA~vP-Gl-~p~el~V~~d~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~vDp~~v~ 423 (456)
+.|--++.|.+-=..|.+.+.|+..+| |+ +.++|.|.+. ...|.|+..... +. ++-=...|...|||+.-.
T Consensus 12 ~~~nG~~~~~y~W~Qt~~~V~i~I~lp~~~~~~kdv~V~i~-~~~l~v~~~~~~-----~~-~~~~~~~L~~~I~~e~S~ 84 (124)
T 1wgv_A 12 DSYNGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALS-SSSIRVAMLEEN-----GE-RVLMEGKLTHKINTESSL 84 (124)
T ss_dssp SSSSSBCCSSCEEEEETTEEEEEEECCTTCCSGGGEEEEEC-SSEEEEEEECSS-----SE-EEEEEEEBSSCBCTTTCE
T ss_pred CccCCCcCCcEEEEEcccEEEEEEEcCCCCCchhheEEEEE-cCEEEEEEEccC-----CC-ceEEcccccCcCCCcCCE
Confidence 457778888999999999999999998 88 9999999999 788888764210 11 122456799999999998
Q ss_pred eEEeeCcE-EEEEecceeeeecCCCccee
Q 012780 424 AVVSLHGR-LYGLKLGERQIYEGRDWNYV 451 (456)
Q Consensus 424 A~~~~~G~-L~I~i~k~~~~~~~~~~~~~ 451 (456)
-.+. ++. |.|.+.|.+. .-|..+
T Consensus 85 w~i~-~~k~v~i~L~K~~~----~~W~~L 108 (124)
T 1wgv_A 85 WSLE-PGKCVLVNLSKVGE----YWWNAI 108 (124)
T ss_dssp EEEC-TTSEEEEEECBSSS----CCCSCS
T ss_pred EEEe-CCCEEEEEEEECCC----CCCcCc
Confidence 8888 886 9999999852 347653
No 31
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi}
Probab=95.50 E-value=0.035 Score=48.01 Aligned_cols=82 Identities=9% Similarity=0.024 Sum_probs=64.5
Q ss_pred ceeeeeccCCeEEEEEEcC-CCCccceEEEecCCceEEEecccCCCCCCCCCCcceEEeeCCCCCCCCCceeEEeeCcEE
Q 012780 354 VKINVREAKDCYEVYALVP-GLLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSAVVSLHGRL 432 (456)
Q Consensus 354 p~iNV~~T~d~~EVyA~vP-Gl~p~el~V~~d~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~vDp~~v~A~~~~~G~L 432 (456)
|.+.=..|.+.+.|+..+| |+++++|.|.+. ...|.|+.. +.. -=...|...|||+.-.-.+. ++.|
T Consensus 5 ~~y~W~Qt~~~V~i~I~lp~~~~~kdv~V~i~-~~~l~v~~~--------g~~--~~~~~L~~~I~~e~S~w~i~-~~kv 72 (131)
T 2o30_A 5 AKYTWDQELNEINIQFPVTGDADSSAIKIRMV-GKKICVKNQ--------GEI--VIDGELLHEVDVSSLWWVIN-GDVV 72 (131)
T ss_dssp CCCEEEEETTEEEEEEECC---CCSCEEEEEE-TTEEEEEET--------TEE--EEEEEBSSCEEEEEEEEEEE-TTEE
T ss_pred CcEEEEecCCEEEEEEECCCCCCccceEEEEE-CCEEEEEEC--------CEe--eEccccccccccccCEEEEe-CCEE
Confidence 4555667899999999985 999999999999 788888763 111 23468999999999999998 9999
Q ss_pred EEEecceeeeecCCCccee
Q 012780 433 YGLKLGERQIYEGRDWNYV 451 (456)
Q Consensus 433 ~I~i~k~~~~~~~~~~~~~ 451 (456)
.|.+.|. ++.-|..+
T Consensus 73 ~i~L~K~----~~~~W~~L 87 (131)
T 2o30_A 73 DVNVTKK----RNEWWDSL 87 (131)
T ss_dssp EEEEEES----SCCCCSCS
T ss_pred EEEEEEC----CCCCCccc
Confidence 9999997 45668754
No 32
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus}
Probab=95.45 E-value=0.066 Score=48.07 Aligned_cols=89 Identities=8% Similarity=0.014 Sum_probs=71.4
Q ss_pred CCCcceeeeeccCCeEEEEEEcC-CCCccceEEEecCCceEEEecccCCCCCCCCCCcceEEeeCCCCCCCCCceeEEee
Q 012780 350 PADWVKINVREAKDCYEVYALVP-GLLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSAVVSL 428 (456)
Q Consensus 350 ~ad~p~iNV~~T~d~~EVyA~vP-Gl~p~el~V~~d~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~vDp~~v~A~~~~ 428 (456)
|+..|.+-=..|.+.+.|+..+| |+..++|.|.+. ...|.|+.. +. ++ =...|...|+++.-.-.+.
T Consensus 10 ~~~~~~y~W~Qt~~eV~v~I~lp~~~~~kdv~V~i~-~~~L~v~~k--------g~-~~-l~g~L~~~I~~eeS~w~i~- 77 (157)
T 2rh0_A 10 PCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQ-SRHVALAVG--------GR-EI-LKGKLFDSTIADEGTWTLE- 77 (157)
T ss_dssp CEECSSEEEEECSSEEEEEEECCTTCCGGGEEEEEC-SSEEEEEET--------TE-EE-EEEEBSSCBCGGGCEEEEE-
T ss_pred cCCCCcEEEEecCCEEEEEEECCCCCcccceEEEEe-cCEEEEEEC--------CE-EE-EeeccccccCccccEEEEc-
Confidence 45667788888999999999997 999999999999 788888764 11 22 3467999999999999999
Q ss_pred CcE-EEEEecceeeeecCCCccee
Q 012780 429 HGR-LYGLKLGERQIYEGRDWNYV 451 (456)
Q Consensus 429 ~G~-L~I~i~k~~~~~~~~~~~~~ 451 (456)
++. |.|.+.|.+.. .+.-|..+
T Consensus 78 ~~k~v~I~L~K~~~~-~~~~W~~L 100 (157)
T 2rh0_A 78 DRKMVRIVLTKTKRD-AANCWTSL 100 (157)
T ss_dssp CCCEEEEEEEBSSCS-TTCCCSEE
T ss_pred CCcEEEEEEEEcCCC-cCCcChhh
Confidence 886 99999998642 24567754
No 33
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=95.16 E-value=0.039 Score=55.71 Aligned_cols=62 Identities=16% Similarity=0.218 Sum_probs=54.2
Q ss_pred eEEEEEEcCCCCccceEEEecCCceEEEecccCCCCCCCCCCcceEEeeCCCCCCCC-CceeEEeeCcEEEEEecc
Q 012780 364 CYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPL-QTSAVVSLHGRLYGLKLG 438 (456)
Q Consensus 364 ~~EVyA~vPGl~p~el~V~~d~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~vDp~-~v~A~~~~~G~L~I~i~k 438 (456)
.+.+.-++||+++++|++.-. +.-|+| .++.|||.|.||+.+--- -+.|.+. +|.|.|+.-.
T Consensus 306 ~~~~~l~lP~~~~~~~~l~~~-gdeL~v-----------~~g~~rR~i~LP~~L~~~~v~~A~~~-~~~L~i~~~~ 368 (374)
T 3igf_A 306 NRQVRLFLPGFDKKQVKLTQY-GPEVTV-----------EAGDQRRNIFLPPALSGRPITGAKFQ-NNYLIISFLE 368 (374)
T ss_dssp TTEEEEECTTCCGGGCEEEEE-TTEEEE-----------EETTEEEEEECCTTTTTCCEEEEEEE-TTEEEEEECC
T ss_pred cEEEEEECCCCCHHHeEEEEE-CCeEEE-----------EECCEeecccCCHHHcCCCccccEEE-CCEEEEEEeh
Confidence 688999999999999999988 888888 678999999999995544 6789999 9999998743
No 34
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}
Probab=95.01 E-value=0.097 Score=46.76 Aligned_cols=77 Identities=5% Similarity=0.118 Sum_probs=68.8
Q ss_pred ceeeeeccCCeEEEEEEcCCCC--ccceEEEecCCceEEEecccCCCCCCCCCCcceEEeeCCCCC-CCCCceeEEee-C
Q 012780 354 VKINVREAKDCYEVYALVPGLL--REEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRI-DPLQTSAVVSL-H 429 (456)
Q Consensus 354 p~iNV~~T~d~~EVyA~vPGl~--p~el~V~~d~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~v-Dp~~v~A~~~~-~ 429 (456)
|..-|-.+++.+-|..-+|.+- .+++++.++ ...+.. ...|++=...||..| |.++.+|.|-. .
T Consensus 4 P~F~itQd~e~viV~Ik~P~~~~~~sdiei~v~-~~~F~F-----------~~~PYyLRL~LP~~V~e~~~~kA~YD~d~ 71 (134)
T 2k8q_A 4 PRFSITQDEEFIFLKIFISNIRFSAVGLEIIIQ-ENMIIF-----------HLSPYYLRLRFPHELIDDERSTAQYDSKD 71 (134)
T ss_dssp SEEEEEECSSEEEEEEECCSSCCCSSSCCCEEC-SSSEEE-----------CSSSSCEEECCSSCEECCSSCEEEEETTT
T ss_pred ceEEEEECCCEEEEEEEcCccccCccccEEEEe-CCEEEE-----------ecCCeEEEecCCCeeecCCCcceeEeccC
Confidence 6778889999999999999999 999999999 777766 566899999999998 99999999986 8
Q ss_pred cEEEEEecceeee
Q 012780 430 GRLYGLKLGERQI 442 (456)
Q Consensus 430 G~L~I~i~k~~~~ 442 (456)
|.|+|++||...-
T Consensus 72 ~~~~VtLpK~~~G 84 (134)
T 2k8q_A 72 ECINVKVAKLNKN 84 (134)
T ss_dssp TEEEEEEEESSTT
T ss_pred CEEEEEEeCCCCC
Confidence 9999999998653
No 35
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}
Probab=92.48 E-value=0.64 Score=40.66 Aligned_cols=77 Identities=5% Similarity=0.118 Sum_probs=67.2
Q ss_pred ceeeeeccCCeEEEEEEcCCCC--ccceEEEecCCceEEEecccCCCCCCCCCCcceEEeeCCCCC-CCCCceeEEee-C
Q 012780 354 VKINVREAKDCYEVYALVPGLL--REEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRI-DPLQTSAVVSL-H 429 (456)
Q Consensus 354 p~iNV~~T~d~~EVyA~vPGl~--p~el~V~~d~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~v-Dp~~v~A~~~~-~ 429 (456)
|+.-|-.+++.+-|..-+|-+- ..++++.++ +..++. ...|+.=...||..| |.++-+|.|-. .
T Consensus 18 P~F~itQDdefv~I~I~~p~ir~~a~~~ei~vd-~~~F~F-----------~~~PYyLRL~lP~~vved~~~~A~YD~d~ 85 (115)
T 3eud_A 18 PRFSITQDEEFIFLKIFISNIRFSAVGLEIIIQ-ENMIIF-----------HLSPYYLRLRFPHELIDDERSTAQYDSKD 85 (115)
T ss_dssp CCEEEEECSSEEEEEEECCSCCCCSSSCEEEEE-TTEEEE-----------EETTEEEEEECSSCEECSTTCEEEEETTT
T ss_pred CcEEEEECCCEEEEEEEcCceecccCccEEEEe-CCEEEE-----------ecCCeEEEEecCcceecCCCcceEEeCCC
Confidence 7789999999999999999977 889999999 777776 455888899999996 99999999975 8
Q ss_pred cEEEEEecceeee
Q 012780 430 GRLYGLKLGERQI 442 (456)
Q Consensus 430 G~L~I~i~k~~~~ 442 (456)
|+++|+|||+..-
T Consensus 86 g~~~v~lpK~~~G 98 (115)
T 3eud_A 86 ECINVKVAKLNKN 98 (115)
T ss_dssp TEEEEEEEESSTT
T ss_pred cEEEEEEcCCcCC
Confidence 9999999998753
No 36
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2
Probab=91.98 E-value=0.33 Score=41.58 Aligned_cols=84 Identities=13% Similarity=0.103 Sum_probs=67.4
Q ss_pred eeeeeccCCeEEEEEEcCCCCccceEEEecCCceEEEecccCCCCCCCCCCcceEEeeCCCCCCCCCceeEEeeCcEEEE
Q 012780 355 KINVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSAVVSLHGRLYG 434 (456)
Q Consensus 355 ~iNV~~T~d~~EVyA~vPGl~p~el~V~~d~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~vDp~~v~A~~~~~G~L~I 434 (456)
.+.=..|.+.+.|...+|+. +++.|.+. ...|++++.-. . .-..|.-.+.|-..|||+.-+..+. +..+.|
T Consensus 5 ~~~W~Qt~~~V~ltI~~~~~--~~~~V~~~-~~~l~~~~~~~----~-~~~~y~~~l~L~~~I~~e~S~~~v~-~~kiei 75 (125)
T 1ejf_A 5 SAKWYDRRDYVFIEFCVEDS--KDVNVNFE-KSKLTFSCLGG----S-DNFKHLNEIDLFHCIDPNDSKHKRT-DRSILC 75 (125)
T ss_dssp CEEEEECSSEEEEEECCTTE--EEEEEEEE-TTEEEEEEEET----T-TTEEEEEEEEBSSCEEEEEEEEEEC-SSCEEE
T ss_pred ceeEEeCCCEEEEEEEecCC--CceEEEEE-CCEEEEEEEeC----C-CCceEEEEEEccceeccccCEEEEC-CCEEEE
Confidence 56677899999999999995 79999999 78899986510 0 1135888899999999999999998 899999
Q ss_pred EecceeeeecCCCcce
Q 012780 435 LKLGERQIYEGRDWNY 450 (456)
Q Consensus 435 ~i~k~~~~~~~~~~~~ 450 (456)
++.|.+. |.-|.-
T Consensus 76 ~L~K~~~---~~~W~r 88 (125)
T 1ejf_A 76 CLRKGES---GQSWPR 88 (125)
T ss_dssp EEEESST---TCCCSS
T ss_pred EEEECCC---CCCCCc
Confidence 9999863 445653
No 37
>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=91.57 E-value=0.21 Score=43.54 Aligned_cols=74 Identities=8% Similarity=0.084 Sum_probs=54.8
Q ss_pred CeEEEEEEcCCCCccceEEEecCCceEEEecccCCCCCCCCCCcceEEeeCCCCCCCCCceeEEeeCcE-EEEEeccee
Q 012780 363 DCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSAVVSLHGR-LYGLKLGER 440 (456)
Q Consensus 363 d~~EVyA~vPGl~p~el~V~~d~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~vDp~~v~A~~~~~G~-L~I~i~k~~ 440 (456)
+.+.|...+|++ .++.|.+. ...|.+++.-...........|.-.+.|...|||+.....++ ++. |.|.|.|.+
T Consensus 23 ~~V~ltI~~~~~--~~~~V~~~-~~~l~~~~~~~~~~g~~~~~~y~~~l~L~~~Idpe~S~~~v~-~~~~vei~L~K~~ 97 (134)
T 2cg9_X 23 NYVLITVSIADC--DAPELTIK-PSYIELKAQSKPHVGDENVHHYQLHIDLYKEIIPEKTMHKVA-NGQHYFLKLYKKD 97 (134)
T ss_dssp SEEEEECCCSSE--ESCCCCBC-SSEEEECCEEC-------CEEBCEEEECSSCCCSSSEEEEEC-CC--CEEEEEECS
T ss_pred CEEEEEEEecCC--CceEEEEE-CCEEEEEEecccccCCccCceEEEEEEChhhccccccEEEEC-CCEEEEEEEEECC
Confidence 348888888886 58899999 778999866211000000136888899999999999999998 998 999999975
No 38
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=91.37 E-value=0.39 Score=42.82 Aligned_cols=79 Identities=13% Similarity=0.072 Sum_probs=65.1
Q ss_pred cceeeeeccCCeEEEEEEcCCCCccceEEEecCCceEEEecccCCCCCCCCCCcceEEeeCCCCCCCCCceeEEeeCcEE
Q 012780 353 WVKINVREAKDCYEVYALVPGLLREEVRVQSDPAGRLVITGEPEQVDNPWGITPFKKVVILPSRIDPLQTSAVVSLHGRL 432 (456)
Q Consensus 353 ~p~iNV~~T~d~~EVyA~vPGl~p~el~V~~d~~g~L~IsGer~~~~~~~~~~~FrRvv~LP~~vDp~~v~A~~~~~G~L 432 (456)
.|.+.=+.|.+.|-|..+++++ +++.|.+.|...|++++. .. .-..|.-.+.|=..|||+ .+..++ ...+
T Consensus 4 ~P~~~W~Qt~~~V~ltI~l~~~--~~v~V~~~~~~~l~~~~~--~~----~~~~y~~~l~L~~~Idpe-S~~~v~-~~kI 73 (150)
T 2kmw_A 4 NPEVLWAQRSDKVYLTVALPDA--KDISVKCEPQGLFSFSAL--GA----QGERFEFSLELYGKIMTE-YRKNVG-LRNI 73 (150)
T ss_dssp CCCEEEEECSSEEEEEECCSSE--EEEEECCCTTEEEEEEEE--TT----TTEEEEEEEEBSSCEEEE-EEEEEE-SSSE
T ss_pred CCcEEEEeCCCEEEEEEEeCCC--CceEEEEecCCEEEEEEE--cC----CCceEEEEeEhhhccccc-ceEEec-CCEE
Confidence 3567778899999999999997 578899987789999986 11 113688889999999999 888887 8889
Q ss_pred EEEecceee
Q 012780 433 YGLKLGERQ 441 (456)
Q Consensus 433 ~I~i~k~~~ 441 (456)
.|+|.|++.
T Consensus 74 ei~L~K~e~ 82 (150)
T 2kmw_A 74 IFSIQKEER 82 (150)
T ss_dssp EEEEEECCS
T ss_pred EEEEEECCC
Confidence 999999874
No 39
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=71.71 E-value=5.1 Score=30.77 Aligned_cols=41 Identities=12% Similarity=0.130 Sum_probs=30.4
Q ss_pred hHHHHHHhcCccchhccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhHHH
Q 012780 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLE 232 (456)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~eLglP~t~TSas~~LK~~YeKyLlp 232 (456)
.|...|..+|. +.|..|+..|++.. -.+.++|..|..+|.+
T Consensus 20 ~L~~~v~~~G~-------~~W~~Ia~~~~~~~---Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 20 NLRSGVRKYGE-------GNWSKILLHYKFNN---RTSVMLKDRWRTMKKL 60 (69)
T ss_dssp HHHHHHHHHCS-------SCHHHHHHHSCCSS---CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCC-------CcHHHHHHHcCcCC---CCHHHHHHHHHHHcCC
Confidence 47777887772 37999999997531 2257889999988865
No 40
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=71.65 E-value=2.2 Score=30.95 Aligned_cols=39 Identities=18% Similarity=0.325 Sum_probs=28.4
Q ss_pred hHHHHHHhcCccchhccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhHHH
Q 012780 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLE 232 (456)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~eLglP~t~TSas~~LK~~YeKyLlp 232 (456)
+|..+|..+| .+.|..||..|.- - .+.+.|..|..||.|
T Consensus 13 ~L~~~v~~~G-------~~~W~~Ia~~~~~---R--t~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 13 RLIKLVQKYG-------PKRWSVIAKHLKG---R--IGKQCRERWHNHLNP 51 (52)
T ss_dssp HHHHHHHHHC-------TTCHHHHHTTSTT---C--CHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHC-------cChHHHHHHHcCC---C--CHHHHHHHHHHHcCc
Confidence 4667777777 2569999999842 1 257889999988843
No 41
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=71.26 E-value=3.1 Score=30.07 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=28.4
Q ss_pred hHHHHHHhcCccchhccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhHHH
Q 012780 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLE 232 (456)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~eLglP~t~TSas~~LK~~YeKyLlp 232 (456)
+|..+|..+|- ..|..||..|.- - .+.++|..|.++|.|
T Consensus 13 ~L~~~v~~~G~-------~~W~~Ia~~~~~---R--t~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 13 KLKKLVEQNGT-------DDWKVIANYLPN---R--TDVQCQHRWQKVLNP 51 (52)
T ss_dssp HHHHHHHHHCS-------SCHHHHHHTSTT---C--CHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhCC-------CCHHHHHHHcCC---C--CHHHHHHHHHHHcCc
Confidence 46677777762 479999999842 1 257889999998853
No 42
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=66.76 E-value=5.5 Score=29.82 Aligned_cols=39 Identities=23% Similarity=0.292 Sum_probs=28.7
Q ss_pred hHHHHHHhcCccchhccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhHH
Q 012780 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALL 231 (456)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~eLglP~t~TSas~~LK~~YeKyLl 231 (456)
+|..+|..+| .+.|..||..|+...+ +.+.|.+|.+|++
T Consensus 19 ~L~~~v~~~G-------~~~W~~IA~~~~~~Rt----~~qcr~r~~~~~~ 57 (58)
T 2elk_A 19 LLIDACETLG-------LGNWADIADYVGNART----KEECRDHYLKTYI 57 (58)
T ss_dssp HHHHHHHHTT-------TTCHHHHHHHHCSSCC----HHHHHHHHHHHTT
T ss_pred HHHHHHHHHC-------cCCHHHHHHHHCCCCC----HHHHHHHHHHHcc
Confidence 5677788777 2479999999974332 5678888988764
No 43
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.77 E-value=5.5 Score=30.58 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=28.3
Q ss_pred hHHHHHHhcCccchhccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhHHH
Q 012780 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLE 232 (456)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~eLglP~t~TSas~~LK~~YeKyLlp 232 (456)
+|..+|..+| .+.|..||..|+- - .+.+.|..|..||.+
T Consensus 19 ~L~~~v~~~G-------~~~W~~Ia~~l~~---R--t~~qcr~Rw~~~L~p 57 (70)
T 2dim_A 19 ILKAAVMKYG-------KNQWSRIASLLHR---K--SAKQCKARWYEWLDP 57 (70)
T ss_dssp HHHHHHHHTC-------SSCHHHHHHHSTT---C--CHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHC-------cCCHHHHHHHhcC---C--CHHHHHHHHHHHcCC
Confidence 4667777777 2579999999851 1 256888889888753
No 44
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=63.35 E-value=7.4 Score=29.18 Aligned_cols=38 Identities=24% Similarity=0.275 Sum_probs=27.7
Q ss_pred hHHHHHHhcCccchhccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhHH
Q 012780 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALL 231 (456)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~eLglP~t~TSas~~LK~~YeKyLl 231 (456)
+|..+|..+|- +.|..||..|+- . .+.+.|.+|.+||.
T Consensus 18 ~L~~~v~~~G~-------~~W~~Ia~~~~~-R----t~~qcr~r~~~~l~ 55 (60)
T 1x41_A 18 ALLEAVMDCGF-------GNWQDVANQMCT-K----TKEECEKHYMKYFS 55 (60)
T ss_dssp HHHHHHHHTCT-------TCHHHHHHHHTT-S----CHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCc-------CcHHHHHHHhCC-C----CHHHHHHHHHHHcc
Confidence 45666777762 479999999942 2 25788999999875
No 45
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=57.81 E-value=14 Score=26.81 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=28.6
Q ss_pred hHHHHHHhcCccchhccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhH
Q 012780 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKAL 230 (456)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~eLglP~t~TSas~~LK~~YeKyL 230 (456)
.|...|..+| .+.|..|+..|++.. -.+.+++..|..+|
T Consensus 12 ~L~~~v~~~G-------~~~W~~Ia~~~~~~~---Rt~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 12 NLRSGVRKYG-------EGNWSKILLHYKFNN---RTSVMLKDRWRTMK 50 (53)
T ss_dssp HHHHHHHHHC-------TTCHHHHHHHSCCSS---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-------cCCHHHHHHHcCCCC---CCHHHHHHHHHHHH
Confidence 4777888887 237999999997631 12568888888776
No 46
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=57.75 E-value=9 Score=28.45 Aligned_cols=38 Identities=16% Similarity=0.276 Sum_probs=27.2
Q ss_pred hHHHHHHhcCccchhccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhHH
Q 012780 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALL 231 (456)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~eLglP~t~TSas~~LK~~YeKyLl 231 (456)
+|..+|..+| .+.|..||..|.- - ...++|..|.+||.
T Consensus 18 ~L~~~v~~~G-------~~~W~~Ia~~~~~---R--t~~qcr~Rw~~~l~ 55 (60)
T 2d9a_A 18 QLRALVRQFG-------QQDWKFLASHFPN---R--TDQQCQYRWLRVLS 55 (60)
T ss_dssp HHHHHHHHTC-------TTCHHHHHHHCSS---S--CHHHHHHHHHHTSC
T ss_pred HHHHHHHHhC-------CCCHHHHHHHccC---C--CHHHHHHHHHHHcC
Confidence 4566677776 2479999999842 1 25688999988874
No 47
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.23 E-value=11 Score=29.11 Aligned_cols=44 Identities=14% Similarity=0.250 Sum_probs=29.6
Q ss_pred hHHHHHHhcCccchhccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhHHH
Q 012780 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLE 232 (456)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~eLglP~t~TSas~~LK~~YeKyLlp 232 (456)
+|..+|..+|--. +..+.|..||..|+- - ...++|.+|.+||.+
T Consensus 18 ~L~~~v~~~g~~~--~~~~~W~~IA~~~~~---R--t~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 18 KLEQLLIKYPPEE--VESRRWQKIADELGN---R--TAKQVASQVQKYFIK 61 (75)
T ss_dssp HHHHHHHHSCCCS--CHHHHHHHHHHHHSS---S--CHHHHHHHHHHHHGG
T ss_pred HHHHHHHHhCCCC--CCcccHHHHHHHhCC---C--CHHHHHHHHHHHHHH
Confidence 4556666666211 112689999999952 2 257889999999865
No 48
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.57 E-value=18 Score=27.34 Aligned_cols=40 Identities=18% Similarity=0.197 Sum_probs=27.8
Q ss_pred hHHHHHHhcCccchhccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhHHHHHH
Q 012780 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEK 235 (456)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~eLglP~t~TSas~~LK~~YeKyLlpYE~ 235 (456)
+|..+|..+| ..|..||..+| . .+.++|..|..||.+--.
T Consensus 19 ~L~~~~~~~g--------~~W~~Ia~~~g--R----t~~qcr~Rw~~~l~~~~~ 58 (66)
T 2din_A 19 KLLHLAKLMP--------TQWRTIAPIIG--R----TAAQCLEHYEFLLDKAAQ 58 (66)
T ss_dssp HHHHHHHHCT--------TCHHHHHHHHS--S----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--------CCHHHHhcccC--c----CHHHHHHHHHHHhChHhc
Confidence 3445566555 26999999333 2 257899999999988644
No 49
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=47.89 E-value=26 Score=27.00 Aligned_cols=40 Identities=5% Similarity=0.187 Sum_probs=28.5
Q ss_pred hHHHHHHhcCccchhccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhHHHHH
Q 012780 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYE 234 (456)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~eLglP~t~TSas~~LK~~YeKyLlpYE 234 (456)
.|..+|..+|- .|..||..|.- - ....+|.+|..||....
T Consensus 19 ~l~~~~~~~G~--------~W~~Ia~~~~~---R--t~~q~k~r~~~~l~~~~ 58 (72)
T 2cu7_A 19 LFEQGLAKFGR--------RWTKISKLIGS---R--TVLQVKSYARQYFKNKV 58 (72)
T ss_dssp HHHHHHHHTCS--------CHHHHHHHHSS---S--CHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHCc--------CHHHHHHHcCC---C--CHHHHHHHHHHHHHHHH
Confidence 45556666663 79999998742 2 25789999999987653
No 50
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=41.49 E-value=37 Score=25.96 Aligned_cols=39 Identities=8% Similarity=0.134 Sum_probs=27.6
Q ss_pred hHHHHHHhcCccchhccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhH
Q 012780 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKAL 230 (456)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~eLglP~t~TSas~~LK~~YeKyL 230 (456)
+|...|..+|- +.|..|+..+.+..- .+.++|.-|..+|
T Consensus 21 ~L~~~V~~~G~-------~~W~~Ia~~~~~~~R---t~~qcr~Rw~nl~ 59 (64)
T 3sjm_A 21 WVKAGVQKYGE-------GNWAAISKNYPFVNR---TAVMIKDRWRTMK 59 (64)
T ss_dssp HHHHHHHHHCT-------TCHHHHHHHSCCSSC---CHHHHHHHHHHHH
T ss_pred HHHHHHHccCC-------CchHHHHhhcCCCCC---CHHHHHHHHHHHh
Confidence 56677887772 369999999876422 2567888887665
No 51
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=37.06 E-value=32 Score=26.10 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=31.0
Q ss_pred hHHHHHHhcCcc-chhccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhH
Q 012780 182 KLWRAVVRLGGY-EVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKAL 230 (456)
Q Consensus 182 kLYk~V~~rGGy-dkVt~~KkWreVa~eLglP~t~TSas~~LK~~YeKyL 230 (456)
.|+..|.+.... ..|+.++.|.++++.. +|. .| -.+.|..|.|+|
T Consensus 12 ~L~~~v~~~~~~~~~~~Gn~iwk~la~~~-~~~-Ht--wqSwRdRy~k~l 57 (59)
T 1fex_A 12 AILTYVKENARSPSSVTGNALWKAMEKSS-LTQ-HS--WQSLKDRYLKHL 57 (59)
T ss_dssp HHHHHHHHTCCSTTTTTSSHHHHHHHHSC-SSS-CC--SHHHHHHHHHHT
T ss_pred HHHHHHHHhccccCCCccHHHHHHHHHhH-CCC-CC--HHHHHHHHHHHc
Confidence 466677666321 3688899999999832 333 22 478999999987
No 52
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=37.03 E-value=19 Score=28.83 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=24.0
Q ss_pred hHHHHHHhcCccchhccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHh
Q 012780 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKA 229 (456)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~eLglP~t~TSas~~LK~~YeKy 229 (456)
+|..+|..+| +.|..||..++- . ...+.+.+|.++
T Consensus 28 ~Ll~~v~~~G--------~~W~~IA~~v~~-R----T~~qcr~r~~~~ 62 (79)
T 2yus_A 28 LLLEALEMYK--------DDWNKVSEHVGS-R----TQDECILHFLRL 62 (79)
T ss_dssp HHHHHHHHSS--------SCHHHHHHHHSS-C----CHHHHHHHHTTS
T ss_pred HHHHHHHHhC--------CCHHHHHHHcCC-C----CHHHHHHHHHHh
Confidence 3445566666 469999999962 2 256778888765
No 53
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=35.77 E-value=28 Score=28.55 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=26.8
Q ss_pred hHHHHHHhcCccchhccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhHH
Q 012780 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALL 231 (456)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~eLglP~t~TSas~~LK~~YeKyLl 231 (456)
+|..+|..+|. +.|..||..|+- - .+.+.+..|.++|.
T Consensus 11 ~L~~~v~~~g~-------~~W~~Ia~~~~~---R--t~~qcr~Rw~~~L~ 48 (107)
T 2k9n_A 11 KLQQLVMRYGA-------KDWIRISQLMIT---R--NPRQCRERWNNYIN 48 (107)
T ss_dssp HHHHHHHHHCS-------SCHHHHHHHTTT---S--CHHHHHHHHHHHSS
T ss_pred HHHHHHHHHCC-------CCHHHHhhhcCC---C--CHHHHHHHHHHHHc
Confidence 57778888874 579999999852 1 14567777777664
No 54
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=34.92 E-value=30 Score=28.03 Aligned_cols=37 Identities=16% Similarity=0.341 Sum_probs=26.1
Q ss_pred hHHHHHHhcCccchhccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhH
Q 012780 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKAL 230 (456)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~eLglP~t~TSas~~LK~~YeKyL 230 (456)
+|..+|..+|. +.|..||..|. +- .+.+.+..|.++|
T Consensus 14 ~L~~~v~~~g~-------~~W~~Ia~~l~---~R--t~~qcr~Rw~~~l 50 (105)
T 1gv2_A 14 RVIKLVQKYGP-------KRWSVIAKHLK---GR--IGKQCRERWHNHL 50 (105)
T ss_dssp HHHHHHHHHCT-------TCHHHHHTTST---TC--CHHHHHHHHHHTT
T ss_pred HHHHHHHHhCC-------CcHHHHhhhhc---CC--CHHHHHHHHHhcc
Confidence 56677777774 46999999883 11 2467778887775
No 55
>2lpy_A Matrix protein P10; GAG, myristoylated, myristate, viral protein; HET: MYR; NMR {Mason-pfizer monkey virus}
Probab=30.70 E-value=1.4e+02 Score=26.19 Aligned_cols=79 Identities=15% Similarity=0.349 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCeeCCeeechhhHHHHHHhcCccchh---ccCcchhHhhhhcC------CCCCCCcHH
Q 012780 149 EQAEFMKEIESFYRENALEFKPPKFYGEPLNCLKLWRAVVRLGGYEVV---TASKLWRQVGESFH------PPKTCTTVS 219 (456)
Q Consensus 149 Ere~Fl~~L~~FmeeRGtp~k~P~IgGK~LDLykLYk~V~~rGGydkV---t~~KkWreVa~eLg------lP~t~TSas 219 (456)
.+..|+..|+.++++||..++. =||..+|..|.+.-=+=.. ...+.|..|++.|. -|....--+
T Consensus 6 ~~~~fi~~Lk~~LK~rGvkV~~-------k~L~~Ff~~i~~~cPWFp~eGtLd~~~W~kVG~~L~~~~~~~~~~~iP~~~ 78 (124)
T 2lpy_A 6 QHERYVEQLKQALKTRGVKVKY-------ADLLKFFDFVKDTCPWFPQEGTIDIKRWRRVGDCFQDYYNTFGPEKVPVTA 78 (124)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCH-------HHHHHHHHHHHHHCTTCTTTCCCCSHHHHHHHHHHHHHHHTTCCSSCCTHH
T ss_pred HHHHHHHHHHHHHHHCCeeecH-------HHHHHHHHHHHHhCCCcCCCCccCHHHHHHHHHHHHHHHHHhCCCcCChhH
Confidence 5679999999999999997754 4788888888743221111 24568999998882 233222234
Q ss_pred HHHHHHHHHhHHHHH
Q 012780 220 WTFRIFYEKALLEYE 234 (456)
Q Consensus 220 ~~LK~~YeKyLlpYE 234 (456)
+.+=..-.-+|.+.+
T Consensus 79 ~~~W~LI~~~Le~~~ 93 (124)
T 2lpy_A 79 FSYWNLIKELIDKKE 93 (124)
T ss_dssp HHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHcccc
Confidence 444444444554333
No 56
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=30.66 E-value=58 Score=26.66 Aligned_cols=42 Identities=14% Similarity=0.163 Sum_probs=29.7
Q ss_pred hHHHHHHhcCccchhccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhHHHHHHh
Q 012780 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKH 236 (456)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~eLglP~t~TSas~~LK~~YeKyLlpYE~~ 236 (456)
.|..+|..+| +.|..|+..|. +- ....+|..|..++-...++
T Consensus 63 ~L~~~~~~~G--------~~W~~Ia~~l~---gR--t~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 63 LLDQKYAEYG--------PKWNKISKFLK---NR--SDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHHHHHHTC--------SCHHHHHHHHS---SS--CHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhC--------cCHHHHHHHCC---CC--CHHHHHHHHHHHHhhHHHh
Confidence 5666777777 36999999883 22 2568899998887665443
No 57
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=29.25 E-value=60 Score=25.58 Aligned_cols=39 Identities=8% Similarity=0.105 Sum_probs=26.6
Q ss_pred CcchhHhhhhcCCCCCCCcHHHHHHHHHHHhHHHHHHhHhhcCCCCCC
Q 012780 199 SKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKRLSGELQLP 246 (456)
Q Consensus 199 ~KkWreVa~eLglP~t~TSas~~LK~~YeKyLlpYE~~~~~~G~~~~P 246 (456)
...|..||..|| ++ +..++.+|..++... ....|-.++|
T Consensus 31 ~~RW~~IA~~lg--Rt----~~eV~~~y~~L~~d~---~~~~G~vp~P 69 (72)
T 2cqq_A 31 PGRWEKIAHELG--RS----VTDVTTKAKQLKDSV---TCSPGMVSGP 69 (72)
T ss_dssp TTHHHHHHHHHT--SC----HHHHHHHHHHHHHSC---CCCSCCCSCS
T ss_pred CcHHHHHHHHhC--CC----HHHHHHHHHHHHHhc---CccCCCCCCC
Confidence 367999999985 32 578889998886553 2234665544
No 58
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=28.50 E-value=55 Score=26.46 Aligned_cols=36 Identities=17% Similarity=0.407 Sum_probs=25.3
Q ss_pred hHHHHHHhcCccchhccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhH
Q 012780 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKAL 230 (456)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~eLglP~t~TSas~~LK~~YeKyL 230 (456)
.|..+|..+| +.|..|+..|. +-| ...++..|..+|
T Consensus 66 ~L~~~~~~~G--------~~W~~Ia~~l~---gRt--~~~~k~rw~~~~ 101 (105)
T 1gv2_A 66 IIYQAHKRLG--------NRWAEIAKLLP---GRT--DNAIKNHWNSTM 101 (105)
T ss_dssp HHHHHHHHHS--------SCHHHHHTTCT---TCC--HHHHHHHHHHHT
T ss_pred HHHHHHHHhC--------CCHHHHHHHcC---CCC--HHHHHHHHHHHH
Confidence 4666677777 36999999772 222 568888888765
No 59
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=26.32 E-value=1.7e+02 Score=24.05 Aligned_cols=41 Identities=20% Similarity=0.355 Sum_probs=27.6
Q ss_pred CcchhHhhhhcCCCCCCCcHHHHHHHHHHHhHHHHHHhHhhcCCCCCC
Q 012780 199 SKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKRLSGELQLP 246 (456)
Q Consensus 199 ~KkWreVa~eLglP~t~TSas~~LK~~YeKyLlpYE~~~~~~G~~~~P 246 (456)
...|..||..|+- ++ ...++.+|..++...... ..|..+.|
T Consensus 31 ~~rW~~IA~~vpG-RT----~~q~k~ry~~l~~dv~~i--esg~vp~P 71 (93)
T 2cjj_A 31 PDRWANVARAVEG-RT----PEEVKKHYEILVEDIKYI--ESGKVPFP 71 (93)
T ss_dssp TTHHHHHHHHSTT-CC----HHHHHHHHHHHHHHHHHH--HHSSCCC-
T ss_pred CchHHHHHHHcCC-CC----HHHHHHHHHHHHHHHHHh--hcCCCCCC
Confidence 3689999999952 22 578999999877664433 34655444
No 60
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=25.30 E-value=56 Score=27.45 Aligned_cols=37 Identities=16% Similarity=0.341 Sum_probs=24.4
Q ss_pred hHHHHHHhcCccchhccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhH
Q 012780 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKAL 230 (456)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~eLglP~t~TSas~~LK~~YeKyL 230 (456)
+|-.+|..+|. +.|..||..|.- - .+.+.+..|.++|
T Consensus 37 ~L~~~v~~~g~-------~~W~~Ia~~l~~---R--t~~qcr~Rw~~~l 73 (128)
T 1h8a_C 37 RVIEHVQKYGP-------KRWSDIAKHLKG---R--IGKQCRERWHNHL 73 (128)
T ss_dssp HHHHHHHHTCS-------CCHHHHHHHSSS---C--CHHHHHHHHHHTT
T ss_pred HHHHHHHHHCC-------CCHHHHHHHhcC---C--cHHHHHHHHHHhc
Confidence 34555666553 469999999842 1 2467788887766
No 61
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=24.23 E-value=78 Score=25.00 Aligned_cols=26 Identities=8% Similarity=0.165 Sum_probs=19.7
Q ss_pred cchhHhhhhcCCCCCCCcHHHHHHHHHHHhH
Q 012780 200 KLWRQVGESFHPPKTCTTVSWTFRIFYEKAL 230 (456)
Q Consensus 200 KkWreVa~eLglP~t~TSas~~LK~~YeKyL 230 (456)
+.|..||..|+- -| ...++.+|..++
T Consensus 42 ~rW~~IA~~vpG---RT--~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 42 DCWDKIARCVPS---KS--KEDCIARYKLLV 67 (73)
T ss_dssp HHHHHHGGGCSS---SC--HHHHHHHHHHHH
T ss_pred chHHHHHHHcCC---CC--HHHHHHHHHHHH
Confidence 579999999952 22 578888888765
No 62
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Probab=23.98 E-value=89 Score=24.75 Aligned_cols=33 Identities=27% Similarity=0.232 Sum_probs=27.5
Q ss_pred cceEEeeCCCCCCCCCceeEEeeCcEEEEEeccee
Q 012780 406 PFKKVVILPSRIDPLQTSAVVSLHGRLYGLKLGER 440 (456)
Q Consensus 406 ~FrRvv~LP~~vDp~~v~A~~~~~G~L~I~i~k~~ 440 (456)
.|.=.+.||. ++++.++-.+. ++.|.|+-.+..
T Consensus 15 ~~~v~~~lPG-~~~edi~v~~~-~~~L~I~g~~~~ 47 (100)
T 3gla_A 15 HFVLYADLPG-IDPSQIEVQMD-KGILSIRGERKS 47 (100)
T ss_dssp EEEEEEECTT-SCGGGCEEEEE-TTEEEEEEEECC
T ss_pred EEEEEEECCC-CCHHHEEEEEE-CCEEEEEEEEcC
Confidence 4555788995 89999999999 999999976654
No 63
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=22.12 E-value=75 Score=26.91 Aligned_cols=38 Identities=13% Similarity=0.359 Sum_probs=27.0
Q ss_pred hHHHHHHhcCccchhccCcchhHhhhhcCCCCCCCcHHHHHHHHHHHhHHH
Q 012780 182 KLWRAVVRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLE 232 (456)
Q Consensus 182 kLYk~V~~rGGydkVt~~KkWreVa~eLglP~t~TSas~~LK~~YeKyLlp 232 (456)
.|..+|..+|. .|..||..|. +-| ...+|..|..+|..
T Consensus 64 ~L~~~~~~~G~--------~W~~Ia~~l~---gRt--~~~~k~rw~~~l~~ 101 (131)
T 3zqc_A 64 TIFRNYLKLGS--------KWSVIAKLIP---GRT--DNAIKNRWNSSISK 101 (131)
T ss_dssp HHHHHHHHSCS--------CHHHHTTTST---TCC--HHHHHHHHHHTTGG
T ss_pred HHHHHHHHHCc--------CHHHHHHHcC---CCC--HHHHHHHHHHHHHH
Confidence 46667777874 5999999874 222 56888888887743
Done!