BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012783
(456 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224061230|ref|XP_002300381.1| predicted protein [Populus trichocarpa]
gi|222847639|gb|EEE85186.1| predicted protein [Populus trichocarpa]
Length = 527
Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/424 (80%), Positives = 377/424 (88%), Gaps = 5/424 (1%)
Query: 3 MAQAVSLPRILVSTDASK-ALSKQAASTRKPRTSISTKKRAKVSPS---RRTQNLNLEVS 58
MAQ +SL + S + K SK KP+TS+ST+++A SP R+TQ LNL+VS
Sbjct: 1 MAQVLSL-HVFFSAEIHKVGPSKPLKRIHKPKTSLSTRRKATQSPQSPLRKTQKLNLQVS 59
Query: 59 PHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDI 118
PHRAVSAVRLMRI+ GGAFADLLN KGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDI
Sbjct: 60 PHRAVSAVRLMRIEMGGAFADLLNDKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDI 119
Query: 119 VGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRL 178
VGGTIRWRRYLD+LI LCHDEK F SMEPLLLQILRIGFYEIVKLDMP YAVVDENVRL
Sbjct: 120 VGGTIRWRRYLDYLIGSLCHDEKAFRSMEPLLLQILRIGFYEIVKLDMPSYAVVDENVRL 179
Query: 179 AKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWT 238
AKV+LRPGAGN+VNGILRKLVLLK++NSLPLPKLEG+DRAQARALAT+YSHPVWMVRRWT
Sbjct: 180 AKVSLRPGAGNMVNGILRKLVLLKESNSLPLPKLEGDDRAQARALATLYSHPVWMVRRWT 239
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVK 298
K LGQE+AIKLM+WNN +PSFSLRANS KGVTRADLVMQ N+LKVPHELSLHLD F+RVK
Sbjct: 240 KLLGQEKAIKLMMWNNDNPSFSLRANSGKGVTRADLVMQFNMLKVPHELSLHLDHFVRVK 299
Query: 299 TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 358
TGLQ VIQAGLLK+GLCAVQDESAGL+V+VV+PQPG SI+DCCAAPGGKTLYMAS + GQ
Sbjct: 300 TGLQIVIQAGLLKQGLCAVQDESAGLIVSVVNPQPGDSIIDCCAAPGGKTLYMASQMHGQ 359
Query: 359 GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLG 418
G++YAIDINKGRLRI+ ETAKLHQV+ VI TI +DLRTFA++ +K DKVLLDAPCSGLG
Sbjct: 360 GMLYAIDINKGRLRIVKETAKLHQVDGVITTIPSDLRTFAESYQLKSDKVLLDAPCSGLG 419
Query: 419 VLSK 422
VLSK
Sbjct: 420 VLSK 423
>gi|255563540|ref|XP_002522772.1| ribosomal RNA small subunit methyltransferase B, putative [Ricinus
communis]
gi|223538010|gb|EEF39623.1| ribosomal RNA small subunit methyltransferase B, putative [Ricinus
communis]
Length = 527
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/424 (76%), Positives = 369/424 (87%), Gaps = 5/424 (1%)
Query: 3 MAQAVSLPRILVSTDASKALS----KQAASTRKPRTSISTKKRAKVSPSRRTQNLNLEVS 58
MA +SL + +S D SK K + KP+ S+S ++ VSP ++TQ LNLEVS
Sbjct: 1 MAHVLSL-HVYLSADTSKTARCMPLKFSKRANKPKKSLSAPRKGPVSPLKKTQKLNLEVS 59
Query: 59 PHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDI 118
PHRAVSAVRLMRI+ GGAFADLLN+KGKGSG+NEMGYVERTLGFRTK+LDDRDLRLVTD+
Sbjct: 60 PHRAVSAVRLMRIEMGGAFADLLNEKGKGSGENEMGYVERTLGFRTKNLDDRDLRLVTDV 119
Query: 119 VGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRL 178
VGGTIRWRR+LDHLIC L HDE TF SMEPLLLQILRIG YEIVKLDMPPYAVVDENVRL
Sbjct: 120 VGGTIRWRRFLDHLICSLFHDENTFRSMEPLLLQILRIGAYEIVKLDMPPYAVVDENVRL 179
Query: 179 AKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWT 238
AKVALRPGAGN+VNGILRKLVLLK+NNSLPLPKLEG+ RAQARALAT++SHPVWMVRRWT
Sbjct: 180 AKVALRPGAGNMVNGILRKLVLLKENNSLPLPKLEGDARAQARALATLHSHPVWMVRRWT 239
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVK 298
KYLGQEEAI+LM+WNNSDPSFSLRAN KGVTR DLV +LNLLKVP+ELS + D F+R++
Sbjct: 240 KYLGQEEAIRLMIWNNSDPSFSLRANGGKGVTRDDLVTRLNLLKVPYELSPYSDHFVRMR 299
Query: 299 TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 358
TGLQ V+QAGLLKEG C+VQDESAGLVV++V+PQPG SI+DCCAAPGGKT+YMAS + GQ
Sbjct: 300 TGLQIVLQAGLLKEGFCSVQDESAGLVVSIVNPQPGDSIIDCCAAPGGKTVYMASLMEGQ 359
Query: 359 GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLG 418
G+VYAIDINKGRLRIL ETAKLHQ++ VI + +DLR A+N +K DKVLLDAPCSGLG
Sbjct: 360 GMVYAIDINKGRLRILQETAKLHQIDGVITAVPSDLRVLAENYPMKSDKVLLDAPCSGLG 419
Query: 419 VLSK 422
VLSK
Sbjct: 420 VLSK 423
>gi|225461943|ref|XP_002266112.1| PREDICTED: ribosomal RNA small subunit methyltransferase B [Vitis
vinifera]
gi|296089930|emb|CBI39749.3| unnamed protein product [Vitis vinifera]
Length = 525
Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/422 (78%), Positives = 371/422 (87%), Gaps = 3/422 (0%)
Query: 3 MAQAVSLPRILVSTDASKALSK--QAASTRKPRTSISTKKRAKVSPSRRTQNLNLEVSPH 60
MAQ +S + +DA + SK + A TR P T+I T+ + RT +NLE+SPH
Sbjct: 1 MAQVLSFGLRIRCSDARRTSSKPLKVAKTR-PNTAIPTRSTGTRRNANRTYGVNLEISPH 59
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
RAVSAVRLMRI+ GGAFADLLN++GKGSGDNEMGYVERTLGFRT+DLDDRDLRLVTDIVG
Sbjct: 60 RAVSAVRLMRIELGGAFADLLNERGKGSGDNEMGYVERTLGFRTRDLDDRDLRLVTDIVG 119
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAK 180
G+IRWRRYLDHLI LCHD KTF SMEPLLLQILRIGFYEIV LDMPPYAVVDENVRLAK
Sbjct: 120 GSIRWRRYLDHLIVSLCHDSKTFRSMEPLLLQILRIGFYEIVNLDMPPYAVVDENVRLAK 179
Query: 181 VALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKY 240
VALRPGAGN+VN ILRKLVLLK+ NSLPLPKLEG+DRAQARALAT+YSHPVWMVRRWTKY
Sbjct: 180 VALRPGAGNMVNAILRKLVLLKEKNSLPLPKLEGDDRAQARALATLYSHPVWMVRRWTKY 239
Query: 241 LGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTG 300
LGQEEAIKLM+WNNS+PSFSLRANS KG TRADLVM+L +LKVPHELS HLD F+R++TG
Sbjct: 240 LGQEEAIKLMMWNNSEPSFSLRANSGKGFTRADLVMRLKMLKVPHELSPHLDNFVRIRTG 299
Query: 301 LQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGL 360
+Q VIQA LLKEGLC+VQDESAGLVV+VVDPQPG+SI+DCCAAPGGKT++MASCLSGQG+
Sbjct: 300 MQIVIQAQLLKEGLCSVQDESAGLVVSVVDPQPGESIIDCCAAPGGKTIFMASCLSGQGM 359
Query: 361 VYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVL 420
V+AIDINKGRLRI+ ETAKL V+ VI T+HADL TFA N+ VK DKVLLDAPCSGLGVL
Sbjct: 360 VHAIDINKGRLRIVKETAKLLLVDDVITTVHADLCTFAKNNPVKSDKVLLDAPCSGLGVL 419
Query: 421 SK 422
SK
Sbjct: 420 SK 421
>gi|356501644|ref|XP_003519634.1| PREDICTED: ribosomal RNA small subunit methyltransferase B-like
[Glycine max]
Length = 528
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/425 (75%), Positives = 360/425 (84%), Gaps = 13/425 (3%)
Query: 34 TSISTKKRAKVSPSR--RTQNLNLEVSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDN 91
T+IS AK +R +TQ LN EVSPHRAVSAVRLMRI+ GGAFADLLN+KGKGSG+N
Sbjct: 35 TNISIPSTAKGGGNRLLKTQKLNSEVSPHRAVSAVRLMRIELGGAFADLLNEKGKGSGEN 94
Query: 92 EMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLL 151
EMGYV+RTLGFRT++L+ DLRLVTDIVGGTIRWRRYLDHLI LCHD K SSMEPLLL
Sbjct: 95 EMGYVQRTLGFRTRELNHHDLRLVTDIVGGTIRWRRYLDHLISSLCHD-KDISSMEPLLL 153
Query: 152 QILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPK 211
QILRIGFYEIVKLDMPPYAVVDENV+LAK ALRPGAGN+VNGILRKLV+LK+ SLPLPK
Sbjct: 154 QILRIGFYEIVKLDMPPYAVVDENVKLAKFALRPGAGNMVNGILRKLVVLKEKESLPLPK 213
Query: 212 LEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR 271
+EG+DRAQARALAT+YSHPVWMVRRWTKYLGQEEAIKLM+WNNS+PSFSLRAN +G +R
Sbjct: 214 VEGDDRAQARALATLYSHPVWMVRRWTKYLGQEEAIKLMIWNNSEPSFSLRANRARGFSR 273
Query: 272 ADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
DLV QLN LKVPH+LS HLDEF+R+KTGLQ +IQAGLLK+GLC+VQDESAGLVV+VVDP
Sbjct: 274 DDLVTQLNALKVPHKLSPHLDEFVRIKTGLQIIIQAGLLKKGLCSVQDESAGLVVSVVDP 333
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
QPG++I+DCCAAPGGKTLYMAS LSGQG V+AID+N GRLRIL ETAKLHQV+ VI IH
Sbjct: 334 QPGETIIDCCAAPGGKTLYMASHLSGQGKVFAIDVNSGRLRILKETAKLHQVDGVITAIH 393
Query: 392 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCET 451
ADLRT D+ +K +KVLLDAPCSGLGVLSK LR+ K M+ L E
Sbjct: 394 ADLRTLPDSGQLKSNKVLLDAPCSGLGVLSKRA----------DLRWNKNLEDMEQLKEL 443
Query: 452 KYLLL 456
+ LL
Sbjct: 444 QDELL 448
>gi|22331043|ref|NP_187924.2| ribosomal RNA small subunit methyltransferase B [Arabidopsis
thaliana]
gi|18176252|gb|AAL60011.1| putative sun protein fmu [Arabidopsis thaliana]
gi|21436219|gb|AAM51397.1| putative sun protein fmu [Arabidopsis thaliana]
gi|110740623|dbj|BAE98415.1| putative sun (fmu) protein [Arabidopsis thaliana]
gi|332641785|gb|AEE75306.1| ribosomal RNA small subunit methyltransferase B [Arabidopsis
thaliana]
Length = 523
Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/420 (74%), Positives = 367/420 (87%), Gaps = 1/420 (0%)
Query: 3 MAQAVSLPRILVSTDASKALSKQAASTRKPRTSISTKKRAKVSPSRRTQNLNLEVSPHRA 62
MAQ +S R+ +S + KA T+K R S +R V+PSR++QNLNLEVSPHRA
Sbjct: 1 MAQLLSF-RVYLSAETQKASPGSFKRTQKTRKPFSPDRRGPVAPSRKSQNLNLEVSPHRA 59
Query: 63 VSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGT 122
VSAVRLMRI++GGAFADLLN+KGKGSG NEM YVERT+GFRT+DLDDRDLRLVTD+VGGT
Sbjct: 60 VSAVRLMRIEYGGAFADLLNEKGKGSGSNEMSYVERTIGFRTRDLDDRDLRLVTDVVGGT 119
Query: 123 IRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVA 182
IRWRRYLDHLI LCH+E+TF +MEPLLLQILRIG YEI+K DMPPYAVVDENVRLAKVA
Sbjct: 120 IRWRRYLDHLIGSLCHNERTFRNMEPLLLQILRIGVYEIIKRDMPPYAVVDENVRLAKVA 179
Query: 183 LRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLG 242
LRPGAG+ VNGILRKLV LK+ ++LPLPK+EG+DRAQARALAT++SHPVWMVRRW KYLG
Sbjct: 180 LRPGAGDFVNGILRKLVSLKEKDALPLPKVEGDDRAQARALATLHSHPVWMVRRWVKYLG 239
Query: 243 QEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQ 302
+EA KLM+WNN+DP FSLRAN+ + +TRADLV +LN LKVPHELSLHL+EF+R+KTGLQ
Sbjct: 240 LDEATKLMIWNNNDPGFSLRANTGRDITRADLVERLNSLKVPHELSLHLEEFVRIKTGLQ 299
Query: 303 NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVY 362
V+QAGLLKEG+C+VQDESAGL+V+VV PQPG+ I+D CAAPGGKTL+MASCL GQG++Y
Sbjct: 300 TVVQAGLLKEGICSVQDESAGLIVSVVKPQPGERIMDACAAPGGKTLFMASCLKGQGMIY 359
Query: 363 AIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
A+D+N+GRLRIL ETAK HQV+ +I TIH+DLR FA+ + V+ DKVLLDAPCSGLGVLSK
Sbjct: 360 AMDVNEGRLRILGETAKSHQVDGLITTIHSDLRVFAETNEVQYDKVLLDAPCSGLGVLSK 419
>gi|357495101|ref|XP_003617839.1| Ribosomal RNA small subunit methyltransferase [Medicago truncatula]
gi|355519174|gb|AET00798.1| Ribosomal RNA small subunit methyltransferase [Medicago truncatula]
Length = 654
Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust.
Identities = 295/387 (76%), Positives = 347/387 (89%), Gaps = 1/387 (0%)
Query: 36 ISTKKRAKVSPSRRTQNLNLEVSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGY 95
+S+ + S + Q LN ++SPHRAVSAVRLMRI+ GGAFADLLN+KGKGSG+NEMGY
Sbjct: 40 LSSTNNGSANRSVKPQKLNSDISPHRAVSAVRLMRIELGGAFADLLNEKGKGSGENEMGY 99
Query: 96 VERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILR 155
V+RTLGFRT++L+++DLRLVT+IVGGTIRWRRYLDHLI LCHD K SSMEPLLLQILR
Sbjct: 100 VQRTLGFRTRELNNQDLRLVTEIVGGTIRWRRYLDHLISSLCHD-KDISSMEPLLLQILR 158
Query: 156 IGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGN 215
IGFYEIVKLDMPPYAVVDENV+LAK ALRPGAGN+VNG+LRKLV+LK+N +LPLPK+EG+
Sbjct: 159 IGFYEIVKLDMPPYAVVDENVQLAKAALRPGAGNMVNGVLRKLVVLKENETLPLPKVEGD 218
Query: 216 DRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLV 275
DR+QARALAT+YSHPVW+VRRWTKYLGQEEAIKLM+WNN +PS+SLRAN KG +R DLV
Sbjct: 219 DRSQARALATLYSHPVWIVRRWTKYLGQEEAIKLMIWNNIEPSYSLRANRAKGFSRDDLV 278
Query: 276 MQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
+LN LKVPH+LSLHLD+F+R+KTGLQ +I AGL KEGLC+VQDESAGL+V++VDPQPG+
Sbjct: 279 TELNALKVPHKLSLHLDDFVRIKTGLQIIIHAGLFKEGLCSVQDESAGLIVSIVDPQPGE 338
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
+IVDCCAAPGGKTLYMA+ LSGQG+VYA+D+N GRLRIL ETAKLHQV+ V+ T+HADLR
Sbjct: 339 TIVDCCAAPGGKTLYMAAHLSGQGMVYAVDVNSGRLRILKETAKLHQVDGVVTTVHADLR 398
Query: 396 TFADNSTVKCDKVLLDAPCSGLGVLSK 422
T D +K +KVLLDAPCSGLGVLSK
Sbjct: 399 TLTDGEPLKSNKVLLDAPCSGLGVLSK 425
>gi|10172606|dbj|BAB01410.1| unnamed protein product [Arabidopsis thaliana]
Length = 531
Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust.
Identities = 311/428 (72%), Positives = 367/428 (85%), Gaps = 9/428 (2%)
Query: 3 MAQAVSLPRILVSTDASKALSKQAASTRKPRTSISTKKRAKVSPSRRTQNLNLEVSPHRA 62
MAQ +S R+ +S + KA T+K R S +R V+PSR++QNLNLEVSPHRA
Sbjct: 1 MAQLLSF-RVYLSAETQKASPGSFKRTQKTRKPFSPDRRGPVAPSRKSQNLNLEVSPHRA 59
Query: 63 V--------SAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRL 114
V SAVRLMRI++GGAFADLLN+KGKGSG NEM YVERT+GFRT+DLDDRDLRL
Sbjct: 60 VFVCGAYTVSAVRLMRIEYGGAFADLLNEKGKGSGSNEMSYVERTIGFRTRDLDDRDLRL 119
Query: 115 VTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDE 174
VTD+VGGTIRWRRYLDHLI LCH+E+TF +MEPLLLQILRIG YEI+K DMPPYAVVDE
Sbjct: 120 VTDVVGGTIRWRRYLDHLIGSLCHNERTFRNMEPLLLQILRIGVYEIIKRDMPPYAVVDE 179
Query: 175 NVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMV 234
NVRLAKVALRPGAG+ VNGILRKLV LK+ ++LPLPK+EG+DRAQARALAT++SHPVWMV
Sbjct: 180 NVRLAKVALRPGAGDFVNGILRKLVSLKEKDALPLPKVEGDDRAQARALATLHSHPVWMV 239
Query: 235 RRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEF 294
RRW KYLG +EA KLM+WNN+DP FSLRAN+ + +TRADLV +LN LKVPHELSLHL+EF
Sbjct: 240 RRWVKYLGLDEATKLMIWNNNDPGFSLRANTGRDITRADLVERLNSLKVPHELSLHLEEF 299
Query: 295 IRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASC 354
+R+KTGLQ V+QAGLLKEG+C+VQDESAGL+V+VV PQPG+ I+D CAAPGGKTL+MASC
Sbjct: 300 VRIKTGLQTVVQAGLLKEGICSVQDESAGLIVSVVKPQPGERIMDACAAPGGKTLFMASC 359
Query: 355 LSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPC 414
L GQG++YA+D+N+GRLRIL ETAK HQV+ +I TIH+DLR FA+ + V+ DKVLLDAPC
Sbjct: 360 LKGQGMIYAMDVNEGRLRILGETAKSHQVDGLITTIHSDLRVFAETNEVQYDKVLLDAPC 419
Query: 415 SGLGVLSK 422
SGLGVLSK
Sbjct: 420 SGLGVLSK 427
>gi|297834138|ref|XP_002884951.1| NOL1/NOP2/sun family protein [Arabidopsis lyrata subsp. lyrata]
gi|297330791|gb|EFH61210.1| NOL1/NOP2/sun family protein [Arabidopsis lyrata subsp. lyrata]
Length = 525
Score = 626 bits (1614), Expect = e-177, Method: Compositional matrix adjust.
Identities = 309/422 (73%), Positives = 361/422 (85%), Gaps = 3/422 (0%)
Query: 3 MAQAVSLPRILVSTDASKALSKQAASTRKPRTSISTKKRAKVSPSRRTQNLNLEVSPHRA 62
MAQ +S R+ +S + KA T K R S +R +PSR+ QNLNLEVSPHRA
Sbjct: 1 MAQLLSF-RVYLSAETQKASPGSFKRTPKTRKPFSQDRRGPGAPSRKPQNLNLEVSPHRA 59
Query: 63 VSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVT--DIVG 120
VSAVRLMRI++GGAFADLLN+KGKGSG NEM YVERT+GFRT+DLDDRDLRLV+ D+VG
Sbjct: 60 VSAVRLMRIEYGGAFADLLNEKGKGSGSNEMSYVERTIGFRTRDLDDRDLRLVSVADVVG 119
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAK 180
GTIRWRRYLDHLI LCH+E+TF +MEPLLLQILRIG YEI+K DMPPYAVVDENVRLAK
Sbjct: 120 GTIRWRRYLDHLIGSLCHNERTFRNMEPLLLQILRIGVYEIIKRDMPPYAVVDENVRLAK 179
Query: 181 VALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKY 240
VALRPGAG+ VNGILRKLV LK+ ++LPLPK+EG+DRAQARALAT++SHPVWMVRRW KY
Sbjct: 180 VALRPGAGDFVNGILRKLVSLKEKDALPLPKVEGDDRAQARALATLHSHPVWMVRRWVKY 239
Query: 241 LGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTG 300
LG EEA LM WNN+DP FSLRAN+ +G+ R+DLV +LN LKVPHELSLHL+EF+R+KTG
Sbjct: 240 LGLEEATTLMTWNNNDPGFSLRANTGRGIARSDLVERLNSLKVPHELSLHLEEFVRIKTG 299
Query: 301 LQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGL 360
LQ V+QAGLLKEG+C+VQDESAGL+V+VV PQPG+ I+D CAAPGGKTL+MASCL GQG+
Sbjct: 300 LQTVVQAGLLKEGICSVQDESAGLIVSVVKPQPGERIMDACAAPGGKTLFMASCLKGQGM 359
Query: 361 VYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVL 420
+YA+D+N+GRLRIL ETAK HQV+ +I TIH+DLR FA S V+ DKVLLDAPCSGLGVL
Sbjct: 360 IYAMDVNEGRLRILGETAKSHQVDGLITTIHSDLRVFAVTSEVQYDKVLLDAPCSGLGVL 419
Query: 421 SK 422
SK
Sbjct: 420 SK 421
>gi|115479747|ref|NP_001063467.1| Os09g0477900 [Oryza sativa Japonica Group]
gi|52077347|dbj|BAD46388.1| sunL protein-like [Oryza sativa Japonica Group]
gi|113631700|dbj|BAF25381.1| Os09g0477900 [Oryza sativa Japonica Group]
gi|222641777|gb|EEE69909.1| hypothetical protein OsJ_29754 [Oryza sativa Japonica Group]
Length = 570
Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust.
Identities = 276/410 (67%), Positives = 338/410 (82%), Gaps = 11/410 (2%)
Query: 17 DASKALSKQAASTRKPRTS--ISTKK--RAKVSPSRRTQNLNLEVSPHRAVSAVRLMRIQ 72
D+ +A +++ TR P S + T++ R KVS N+NLEVS HRAV+AVRL+RI+
Sbjct: 63 DSPEAPPRRSGITRVPNRSPEMPTERAGRTKVS------NVNLEVSHHRAVAAVRLLRIE 116
Query: 73 FGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHL 132
G AF DLLN+KG SG+NEM YVERTLGF + LD+RD+RLVT IV GT+RW+RYLD+L
Sbjct: 117 KGKAFVDLLNEKGNSSGENEMSYVERTLGFSIRCLDNRDIRLVTVIVAGTVRWKRYLDYL 176
Query: 133 ICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVN 192
I LC +EK F MEPLLLQILRIGF+EI+KL++P YA VDENVRLAKVALRPGAGNLVN
Sbjct: 177 IMSLCSEEKVFREMEPLLLQILRIGFFEILKLNVPAYAAVDENVRLAKVALRPGAGNLVN 236
Query: 193 GILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVW 252
ILRKL+LLK+ NSLPLPK+EG+DRAQARAL+ IYSHPVWMVRRW ++LG+EEA+KLM W
Sbjct: 237 AILRKLLLLKEANSLPLPKIEGDDRAQARALSIIYSHPVWMVRRWIRFLGKEEALKLMKW 296
Query: 253 NNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKE 312
NNSDP FS+R N+ G TRADL+ +L L+V +E S +DEF+R++ G+Q V+QAGLLKE
Sbjct: 297 NNSDPHFSIRVNTANGYTRADLIDRLESLQVHYEKST-MDEFVRIQEGMQTVLQAGLLKE 355
Query: 313 GLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLR 372
G+CAVQDESAGLVV+VVDPQPG++I+DCCAAPGGKTL+MA+ LSGQG ++A+DINKGRLR
Sbjct: 356 GMCAVQDESAGLVVSVVDPQPGETIIDCCAAPGGKTLFMAARLSGQGKIWALDINKGRLR 415
Query: 373 ILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
IL E AKLH ++++I IHADLR +A +T DKVLLDAPCSGLGVLSK
Sbjct: 416 ILMEAAKLHNLDAMISDIHADLRLYAKETTATFDKVLLDAPCSGLGVLSK 465
>gi|218202330|gb|EEC84757.1| hypothetical protein OsI_31764 [Oryza sativa Indica Group]
Length = 570
Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust.
Identities = 276/410 (67%), Positives = 338/410 (82%), Gaps = 11/410 (2%)
Query: 17 DASKALSKQAASTRKPRTS--ISTKK--RAKVSPSRRTQNLNLEVSPHRAVSAVRLMRIQ 72
D+ +A +++ TR P S + T++ R KVS N+NLEVS HRAV+AVRL+RI+
Sbjct: 63 DSPEAPPRRSGITRVPNHSPEMPTERAGRTKVS------NVNLEVSHHRAVAAVRLLRIE 116
Query: 73 FGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHL 132
G AF DLLN+KG SG+NEM YVERTLGF + LD+RD+RLVT IV GT+RW+RYLD+L
Sbjct: 117 KGKAFVDLLNEKGNSSGENEMSYVERTLGFSIRCLDNRDIRLVTVIVAGTVRWKRYLDYL 176
Query: 133 ICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVN 192
I LC +EK F MEPLLLQILRIGF+EI+KL++P YA VDENVRLAKVALRPGAGNLVN
Sbjct: 177 IMSLCSEEKVFREMEPLLLQILRIGFFEILKLNVPAYAAVDENVRLAKVALRPGAGNLVN 236
Query: 193 GILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVW 252
ILRKL+LLK+ NSLPLPK+EG+DRAQARAL+ IYSHPVWMVRRW ++LG+EEA+KLM W
Sbjct: 237 AILRKLLLLKEANSLPLPKIEGDDRAQARALSIIYSHPVWMVRRWIRFLGKEEALKLMKW 296
Query: 253 NNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKE 312
NNSDP FS+R N+ G TRADL+ +L L+V +E S +DEF+R++ G+Q V+QAGLLKE
Sbjct: 297 NNSDPHFSIRVNTANGYTRADLIDRLESLQVHYEKST-MDEFVRIQEGMQTVLQAGLLKE 355
Query: 313 GLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLR 372
G+CAVQDESAGLVV+VVDPQPG++I+DCCAAPGGKTL+MA+ LSGQG ++A+DINKGRLR
Sbjct: 356 GMCAVQDESAGLVVSVVDPQPGETIIDCCAAPGGKTLFMAARLSGQGKIWALDINKGRLR 415
Query: 373 ILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
IL E AKLH ++++I IHADLR +A +T DKVLLDAPCSGLGVLSK
Sbjct: 416 ILMEAAKLHNLDAMISDIHADLRLYAKETTATFDKVLLDAPCSGLGVLSK 465
>gi|326487822|dbj|BAK05583.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 546
Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust.
Identities = 277/424 (65%), Positives = 337/424 (79%), Gaps = 14/424 (3%)
Query: 12 ILVSTDASKALSKQAASTRKPRTSIST--------KKRAKVSPSRRTQN-----LNLEVS 58
+L+S DAS A ++ ++R + + K+ +P RRT +N EVS
Sbjct: 19 LLLSADASSAAPGRSRASRYDAGAPPSRAGRGGAWKRDDPEAPPRRTGTSKVPIVNFEVS 78
Query: 59 PHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDI 118
HRAV+AVRL+R G AF DLLN+K SG+NEMGYVERTLGF T+ LDDRD+RLVT I
Sbjct: 79 HHRAVAAVRLLRADKGKAFVDLLNEKANDSGENEMGYVERTLGFSTRHLDDRDIRLVTVI 138
Query: 119 VGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRL 178
V GT+RW+RY+D+LI LC +EK FS+MEPLLLQILRIGFYEI+KL++P YAVVDENVRL
Sbjct: 139 VAGTVRWKRYIDYLIMSLCSEEKVFSNMEPLLLQILRIGFYEILKLNVPAYAVVDENVRL 198
Query: 179 AKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWT 238
AKVALRPGAGN+VN ILRKL+LLK+ +SLPLPK+EG+DRAQARAL+ IYSHPVWMVRRW
Sbjct: 199 AKVALRPGAGNMVNAILRKLLLLKETDSLPLPKIEGDDRAQARALSIIYSHPVWMVRRWI 258
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVK 298
++LG+EEA+KLM WNNSDP FSLR N+ G TR DLV +L L+V +E S+ +DEF+R++
Sbjct: 259 RFLGKEEALKLMNWNNSDPYFSLRVNTTNGYTRDDLVTRLEDLQVHYEKSI-MDEFVRIR 317
Query: 299 TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 358
G+Q V+QAGLLKEG+CAVQDESAG VV+VVDPQPG++I+DCCAAPGGKTL+MAS L+GQ
Sbjct: 318 EGMQAVLQAGLLKEGMCAVQDESAGFVVSVVDPQPGETIMDCCAAPGGKTLFMASRLAGQ 377
Query: 359 GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLG 418
G V A+DINKGRLRIL E AK H ++ +I IH DLR +A ST K DKVLLDAPCSGLG
Sbjct: 378 GKVSALDINKGRLRILMEAAKCHNLDDIITDIHGDLRLYAKESTTKYDKVLLDAPCSGLG 437
Query: 419 VLSK 422
VLSK
Sbjct: 438 VLSK 441
>gi|357154032|ref|XP_003576647.1| PREDICTED: ribosomal RNA small subunit methyltransferase B-like
[Brachypodium distachyon]
Length = 569
Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust.
Identities = 274/406 (67%), Positives = 332/406 (81%), Gaps = 15/406 (3%)
Query: 31 KPRTSISTKKRA------KVSPSRRTQN--------LNLEVSPHRAVSAVRLMRIQFGGA 76
KP S+ +RA K++P+ T+ +N EVS HRAV+AVRL+R + G A
Sbjct: 60 KPDNPDSSPRRAGISGVPKLNPNVSTKRAGMSKVPIINFEVSHHRAVAAVRLLRAEKGKA 119
Query: 77 FADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLL 136
F DLLN+KG SG+NEMGYVERTLGF T+ LDDRD+RLVT IV GT+RW+RYLD+LI L
Sbjct: 120 FVDLLNEKGNDSGENEMGYVERTLGFSTRHLDDRDIRLVTVIVAGTVRWKRYLDYLIMSL 179
Query: 137 CHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILR 196
C +EK FS MEPLLLQILRIGF+EI+KL++P YAVVDENVRLAKVALRPGAGN+VN ILR
Sbjct: 180 CSEEKVFSDMEPLLLQILRIGFFEILKLNVPAYAVVDENVRLAKVALRPGAGNMVNAILR 239
Query: 197 KLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSD 256
KL+LLK+ +SLPLPK+EG+DRAQARAL+ IYSHPVWMVRRW + LG++EA+KLM WNNSD
Sbjct: 240 KLLLLKETDSLPLPKIEGDDRAQARALSIIYSHPVWMVRRWIRVLGKDEALKLMNWNNSD 299
Query: 257 PSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCA 316
P FSLR N+ G RADLV +L L+V +E+S+ +DEF+R++ G+Q V+QAGLLK+G+CA
Sbjct: 300 PYFSLRVNTASGYIRADLVERLEDLQVHYEISI-MDEFVRIREGMQAVLQAGLLKDGMCA 358
Query: 317 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNE 376
VQDESAGLVV+VVDPQPG++I+DCCAAPGGKTL+MAS LSGQG ++A+DINKGRLRIL E
Sbjct: 359 VQDESAGLVVSVVDPQPGETIIDCCAAPGGKTLFMASRLSGQGKIWALDINKGRLRILME 418
Query: 377 TAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
AK H ++ +I IH DLR A STVK DKVLLDAPCSGLGVLSK
Sbjct: 419 AAKSHNLDHMITDIHGDLRLHAKESTVKYDKVLLDAPCSGLGVLSK 464
>gi|242045062|ref|XP_002460402.1| hypothetical protein SORBIDRAFT_02g027560 [Sorghum bicolor]
gi|241923779|gb|EER96923.1| hypothetical protein SORBIDRAFT_02g027560 [Sorghum bicolor]
Length = 574
Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust.
Identities = 270/396 (68%), Positives = 330/396 (83%), Gaps = 7/396 (1%)
Query: 29 TRKPR--TSISTKKRAKVSPSRRTQNLNLEVSPHRAVSAVRLMRIQFGGAFADLLNKKGK 86
TR P T++STK RA +S + +NL+VS HRAV+ VRL+RI+ G AF DLLN+K
Sbjct: 79 TRVPNLGTAVSTK-RAGMS---KDTVINLDVSHHRAVAVVRLLRIEKGKAFVDLLNEKAN 134
Query: 87 GSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSM 146
SG+ E+GYVERTLGF T+ LDDRD+RLVT IV GT+RW+RYLD+LI LC +EK F M
Sbjct: 135 DSGEKEIGYVERTLGFSTRYLDDRDIRLVTVIVAGTVRWKRYLDYLIMSLCSEEKVFREM 194
Query: 147 EPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
EPLLLQILRIGF+EI+KLD+P YA VDENV+LAKVALRPGAGN+VN ILRKLVLLK+ +S
Sbjct: 195 EPLLLQILRIGFFEILKLDVPAYAAVDENVKLAKVALRPGAGNMVNAILRKLVLLKETDS 254
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
LPLPK+EG+DRAQARAL+ IYSHPVWMVRRW ++ G++EA++LM WNNSDP FSLR N+
Sbjct: 255 LPLPKIEGDDRAQARALSIIYSHPVWMVRRWIRFHGKDEALRLMNWNNSDPHFSLRVNTS 314
Query: 267 KGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVV 326
KG TRADLV +L L+V +E S+ +D F+R++ G+Q V+QAGLLK+G+CAVQDESAGLVV
Sbjct: 315 KGYTRADLVKRLESLQVHYEESV-MDGFVRIQEGMQAVLQAGLLKDGICAVQDESAGLVV 373
Query: 327 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV 386
+VVDPQPG++IVDCCAAPGGKTL+MAS LSG+G + A+DINKGRLRIL + AKLH ++ +
Sbjct: 374 SVVDPQPGETIVDCCAAPGGKTLFMASRLSGEGKIQALDINKGRLRILMDAAKLHGLDDI 433
Query: 387 IRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
I IHADLR +A +T K DKVLLDAPCSGLGVLSK
Sbjct: 434 ITDIHADLRLYAKETTAKYDKVLLDAPCSGLGVLSK 469
>gi|226509581|ref|NP_001146662.1| uncharacterized protein LOC100280262 [Zea mays]
gi|219888225|gb|ACL54487.1| unknown [Zea mays]
Length = 555
Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust.
Identities = 267/389 (68%), Positives = 330/389 (84%), Gaps = 5/389 (1%)
Query: 34 TSISTKKRAKVSPSRRTQNLNLEVSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEM 93
+++STKK A +S + +NL+VS HRAV+ VRL+RI+ G AF DLLN+K SGD E+
Sbjct: 67 SAVSTKK-AGMS---KDTFINLDVSHHRAVAVVRLLRIEKGKAFVDLLNEKANDSGDKEI 122
Query: 94 GYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQI 153
GYV+RTLGF T+ L+DRD+RLVT IV GT+RW+RYLD+LI LC +EK F MEPLLLQI
Sbjct: 123 GYVQRTLGFSTRYLEDRDIRLVTVIVAGTVRWKRYLDYLIMSLCSEEKVFREMEPLLLQI 182
Query: 154 LRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLE 213
LRIGF+EI+KLD+P YA VDENVRLAKVALRPGAGN+VN ILRKLVLLK+ +SLPLPK+E
Sbjct: 183 LRIGFFEILKLDVPAYAAVDENVRLAKVALRPGAGNMVNAILRKLVLLKETDSLPLPKIE 242
Query: 214 GNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD 273
G+DRAQARAL+ IYSHPVWMVRRW ++ G++EA++LM WNNSDP FSLR N+ KG TRAD
Sbjct: 243 GDDRAQARALSIIYSHPVWMVRRWIRFHGKDEALRLMNWNNSDPHFSLRVNTSKGYTRAD 302
Query: 274 LVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQP 333
LV +L L+V +E S+ +DEF+R++ G+Q V++AGLLK+G+CAVQDESAGLVV+VVDPQP
Sbjct: 303 LVKRLESLQVHYEESI-MDEFVRIREGMQQVLKAGLLKDGICAVQDESAGLVVSVVDPQP 361
Query: 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD 393
G++IVDCCAAPGGKTL+MAS LSG+G ++A+DINKGRLRIL + AKLH ++ +I IHAD
Sbjct: 362 GETIVDCCAAPGGKTLFMASRLSGEGKIWALDINKGRLRILMDAAKLHGLDDMITDIHAD 421
Query: 394 LRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
LR +A +TVK DKVLLDAPCSGLGVLSK
Sbjct: 422 LRLYAKETTVKYDKVLLDAPCSGLGVLSK 450
>gi|414589762|tpg|DAA40333.1| TPA: hypothetical protein ZEAMMB73_282995 [Zea mays]
Length = 533
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 244/373 (65%), Positives = 300/373 (80%), Gaps = 8/373 (2%)
Query: 57 VSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVT 116
+S AV+ VRL+RI+ G AF DLLN+K SGD E+GYV+RTLGF T+ L+DRD+RLVT
Sbjct: 57 LSVPEAVAVVRLLRIEKGKAFVDLLNEKANDSGDKEIGYVQRTLGFSTRYLEDRDIRLVT 116
Query: 117 DIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENV 176
IV GT+RW+RYLD+LI LC +EK F MEPLLLQILRIGF+EI+KLD+P YA VDENV
Sbjct: 117 VIVAGTVRWKRYLDYLIMSLCSEEKVFREMEPLLLQILRIGFFEILKLDVPAYAAVDENV 176
Query: 177 RLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRR 236
RLAKVALRPGAGN+VN ILRKLVLLK+ +SLPLPK+EG+DRAQARAL+ IYSHPVWMVRR
Sbjct: 177 RLAKVALRPGAGNMVNAILRKLVLLKETDSLPLPKIEGDDRAQARALSIIYSHPVWMVRR 236
Query: 237 WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIR 296
W ++ G++EA++LM WNNSDP FSLR N+ KG TRADLV +L L+V +E S+ +DEF+R
Sbjct: 237 WIRFHGKDEALRLMNWNNSDPHFSLRVNTSKGYTRADLVKRLESLQVHYEESI-MDEFVR 295
Query: 297 VKTGLQNVIQAGLLKEG--LCAVQDE-----SAGLVVAVVDPQPGQSIVDCCAAPGGKTL 349
++ G+Q + +G L D + GLVV+VVDPQPG++IVDCCAAPGGKTL
Sbjct: 296 IREGMQISSNKIVKMDGSMLLIALDVILTVITVGLVVSVVDPQPGETIVDCCAAPGGKTL 355
Query: 350 YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 409
+MAS LSG+G ++A+DINKGRLRIL + AKLH ++ +I IHADLR +A +TVK DKVL
Sbjct: 356 FMASRLSGEGKIWALDINKGRLRILMDAAKLHGLDDMITDIHADLRLYAKETTVKYDKVL 415
Query: 410 LDAPCSGLGVLSK 422
LDAPCSGLGVLSK
Sbjct: 416 LDAPCSGLGVLSK 428
>gi|116788313|gb|ABK24833.1| unknown [Picea sitchensis]
Length = 515
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 254/415 (61%), Positives = 314/415 (75%), Gaps = 6/415 (1%)
Query: 33 RTSISTKKRAKVSPSRRTQNLNLEVSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSG-DN 91
R + KKR P +++ +N VSPHRA SAVRL+RI+ GGAFADLLN + S D+
Sbjct: 64 RNNSQGKKRNPAKPVDKSK-INSNVSPHRAASAVRLLRIEQGGAFADLLNADYRESAIDD 122
Query: 92 EMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLL 151
EM Y++RTLGFRT LD R+ RLVTDIV G +RW+RYLD+LI L K MEPLL
Sbjct: 123 EMDYIQRTLGFRTNPLDARNTRLVTDIVAGVVRWKRYLDYLIFSLYDGAKNVKDMEPLLQ 182
Query: 152 QILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPK 211
QILRIG YEIVKL MPPYAVV+ENV LA+ ALR GAGN+VNGILR++ ++ + LPLPK
Sbjct: 183 QILRIGVYEIVKLGMPPYAVVNENVTLARAALRAGAGNMVNGILRRVASDREKDMLPLPK 242
Query: 212 LEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR 271
+EG+DR++ARAL+ YSHPVWM+RRW YLGQE AI+LM WNNS PSFSLRANS +GV+R
Sbjct: 243 VEGDDRSKARALSVKYSHPVWMIRRWMTYLGQEGAIQLMEWNNSPPSFSLRANSGRGVSR 302
Query: 272 ADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
DLV+ L L V HELS H+ EF+R+ TGLQ+VIQAGLLKEG+CAVQDE AGLVV+VVDP
Sbjct: 303 DDLVLLLKKLNVQHELSPHMTEFVRLSTGLQSVIQAGLLKEGMCAVQDEGAGLVVSVVDP 362
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
QPG++I+DCCAAPGGK L+MAS L GQG V AID+N+GRLR+L E AK+ + V+
Sbjct: 363 QPGETIIDCCAAPGGKALFMASRLQGQGSVIAIDVNQGRLRVLEEAAKVQALEGVVNACQ 422
Query: 392 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQ 446
D+R+FA ++++ DKVLLDAPCSGLGVL K D R ++L+ + L+Q
Sbjct: 423 DDIRSFAVGASIRADKVLLDAPCSGLGVLCKKP----DMRWKRTLKDLEQLILLQ 473
>gi|148906361|gb|ABR16335.1| unknown [Picea sitchensis]
Length = 558
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 254/415 (61%), Positives = 314/415 (75%), Gaps = 6/415 (1%)
Query: 33 RTSISTKKRAKVSPSRRTQNLNLEVSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSG-DN 91
R + KKR P +++ +N VSPHRA SAVRL+RI+ GGAFADLLN + S D+
Sbjct: 64 RNNSQGKKRNPAKPVDKSK-INSNVSPHRAASAVRLLRIEQGGAFADLLNADYRESAIDD 122
Query: 92 EMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLL 151
EM Y++RTLGFRT LD R+ RLVTDIV G +RW+RYLD+LI L K MEPLL
Sbjct: 123 EMDYIQRTLGFRTNPLDARNTRLVTDIVAGVVRWKRYLDYLIFSLYDGAKNVKDMEPLLQ 182
Query: 152 QILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPK 211
QILRIG YEIVKL MPPYAVV+ENV LA+ ALR GAGN+VNGILR++ ++ + LPLPK
Sbjct: 183 QILRIGVYEIVKLGMPPYAVVNENVTLARAALRAGAGNMVNGILRRVASDREKDMLPLPK 242
Query: 212 LEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR 271
+EG+DR++ARAL+ YSHPVWM+RRW YLGQE AI+LM WNNS PSFSLRANS +GV+R
Sbjct: 243 VEGDDRSKARALSVKYSHPVWMIRRWMTYLGQEGAIQLMEWNNSPPSFSLRANSGRGVSR 302
Query: 272 ADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
DLV+ L L V HELS H+ EF+R+ TGLQ+VIQAGLLKEG+CAVQDE AGLVV+VVDP
Sbjct: 303 DDLVLLLKKLNVQHELSPHMTEFVRLSTGLQSVIQAGLLKEGMCAVQDEGAGLVVSVVDP 362
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
QPG++I+DCCAAPGGK L+MAS L GQG V AID+N+GRLR+L E AK+ + V+
Sbjct: 363 QPGETIIDCCAAPGGKALFMASRLQGQGSVIAIDVNQGRLRVLEEAAKVQALEGVVNACQ 422
Query: 392 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQ 446
D+R+FA ++++ DKVLLDAPCSGLGVL K D R ++L+ + L+Q
Sbjct: 423 DDIRSFAVGASIRADKVLLDAPCSGLGVLCKKP----DMRWKRTLKDLEQLILLQ 473
>gi|147837899|emb|CAN67145.1| hypothetical protein VITISV_042360 [Vitis vinifera]
Length = 324
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 234/302 (77%), Positives = 261/302 (86%), Gaps = 3/302 (0%)
Query: 3 MAQAVSLPRILVSTDASKALSK--QAASTRKPRTSISTKKRAKVSPSRRTQNLNLEVSPH 60
MAQ +S + +DA + SK + A TR P T+I T+ + RT +NLE+SPH
Sbjct: 1 MAQVLSFGLRIRCSDARRTSSKPLKVAKTR-PNTAIPTRSTGTRRNANRTYGVNLEISPH 59
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
RAVSAVRLMRI+ GGAFADLLN++GKGSGDNEMGYVERTLGFRT+DLDDRDLRLVTDIVG
Sbjct: 60 RAVSAVRLMRIELGGAFADLLNERGKGSGDNEMGYVERTLGFRTRDLDDRDLRLVTDIVG 119
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAK 180
G+IRWRRYLDHLI LCHD KTF SMEPLLLQILRIGFYEIV LDMPPYAVVDENVRLAK
Sbjct: 120 GSIRWRRYLDHLIVSLCHDSKTFRSMEPLLLQILRIGFYEIVNLDMPPYAVVDENVRLAK 179
Query: 181 VALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKY 240
VALRPGA N+VN ILRKLVLLK+ NSLPLPKLEG+DRAQARALAT+YSHPVWMVRRWTKY
Sbjct: 180 VALRPGAANMVNAILRKLVLLKEKNSLPLPKLEGDDRAQARALATLYSHPVWMVRRWTKY 239
Query: 241 LGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTG 300
LGQEEAIKLM+WNNS+PSFSLRANS KG TRADLVM+L +LKVPHELS HLD F+R++TG
Sbjct: 240 LGQEEAIKLMMWNNSEPSFSLRANSGKGFTRADLVMRLKMLKVPHELSPHLDNFVRIRTG 299
Query: 301 LQ 302
+Q
Sbjct: 300 MQ 301
>gi|168019738|ref|XP_001762401.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686479|gb|EDQ72868.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 465
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 201/355 (56%), Positives = 267/355 (75%), Gaps = 1/355 (0%)
Query: 69 MRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRY 128
MRI+ GGAFAD+L+ +G S ++EM YV RTLGFR LD R+ RLVTD V G +RW+RY
Sbjct: 1 MRIEEGGAFADVLSGEGDNSWEDEMAYVGRTLGFRVPSLDLRERRLVTDEVAGIVRWKRY 60
Query: 129 LDHLI-CLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGA 187
LD LI D + + MEPLL QILR+G YE++KL+MPP+AV++E V+LAKVALR GA
Sbjct: 61 LDFLIFSFFKQDVRDYDRMEPLLRQILRVGLYELIKLEMPPHAVLNETVQLAKVALRAGA 120
Query: 188 GNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAI 247
GNLVNG+LR +V +D LP+P +EG+ R++ARALATI+SHPVWMVR W G++E +
Sbjct: 121 GNLVNGLLRDVVRHQDKGLLPVPAVEGDQRSRARALATIHSHPVWMVRLWFTQFGEDETV 180
Query: 248 KLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQA 307
+LM NN P FSLRANS +GV++ +L+ +L+ L+V + S +L +F+R+ G+Q+V+++
Sbjct: 181 RLMECNNQRPKFSLRANSARGVSKQELIAELDKLEVSYSESPYLPDFVRLSAGMQDVLRS 240
Query: 308 GLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDIN 367
GLL+ G AVQDESAGLVV+V+D PG +I+DCCAAPGGK L +AS L+GQG V A+D+N
Sbjct: 241 GLLQNGCIAVQDESAGLVVSVIDAHPGDTIIDCCAAPGGKALNLASRLNGQGKVVAVDVN 300
Query: 368 KGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
+GRLRIL+E A+ V V+ H DLR +A + D+VLLDAPCSGLGVLSK
Sbjct: 301 EGRLRILSEAAEQQGVGDVVSPCHYDLRDYAAKAAGTADRVLLDAPCSGLGVLSK 355
>gi|302824271|ref|XP_002993780.1| hypothetical protein SELMODRAFT_137586 [Selaginella moellendorffii]
gi|300138376|gb|EFJ05146.1| hypothetical protein SELMODRAFT_137586 [Selaginella moellendorffii]
Length = 476
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 190/357 (53%), Positives = 258/357 (72%), Gaps = 1/357 (0%)
Query: 67 RLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWR 126
RLMRI+ GGAF+D+LN G+ D EM YV+RTLGF L +L+LVT+ V G +RW+
Sbjct: 16 RLMRIEMGGAFSDVLNGDGEDRLDKEMEYVKRTLGFSIPSLRPENLKLVTEEVAGIVRWK 75
Query: 127 RYLDHLIC-LLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRP 185
+YLD++I + D+ F MEP+L Q+LR+G YE++KL++P YAVV+E V+LA A R
Sbjct: 76 KYLDYVISNVYDKDQNEFERMEPILKQVLRLGAYELLKLEVPAYAVVNEAVKLANAASRA 135
Query: 186 GAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEE 245
GAG L N +LR + K+ N+LP+P++ GN R+QARALATI+SHPVWMVRRWT G E+
Sbjct: 136 GAGKLANALLRAVASHKEKNTLPVPEVTGNLRSQARALATIHSHPVWMVRRWTDRYGTED 195
Query: 246 AIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVI 305
+KLM WNN+ P ++LRAN+ G +R DL+ QL L+V + S L +F+RV +GLQ V+
Sbjct: 196 TLKLMEWNNTRPFYALRANNATGTSRDDLIEQLTKLEVSYVKSPLLKDFVRVTSGLQEVL 255
Query: 306 QAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAID 365
++GL+++G C VQDES GLVV ++DPQPG ++DCCAAPGGK+LY+AS L G+G V A+D
Sbjct: 256 RSGLIQQGRCTVQDESGGLVVELLDPQPGDLVIDCCAAPGGKSLYIASRLKGKGKVIAVD 315
Query: 366 INKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
INK RL++L ++AK V+ + + D R T D+VLLDAPCSGLGVLSK
Sbjct: 316 INKARLQLLKDSAKKAGVSEQVSVYNVDARDMIRGKTGLADRVLLDAPCSGLGVLSK 372
>gi|302823170|ref|XP_002993239.1| hypothetical protein SELMODRAFT_136794 [Selaginella moellendorffii]
gi|300138909|gb|EFJ05660.1| hypothetical protein SELMODRAFT_136794 [Selaginella moellendorffii]
Length = 476
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 189/357 (52%), Positives = 258/357 (72%), Gaps = 1/357 (0%)
Query: 67 RLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWR 126
RLMRI+ GGAF+D+LN G+ D EM YV+RTLGF L +L+LVT+ V G +RW+
Sbjct: 16 RLMRIEMGGAFSDVLNGDGEDRLDKEMEYVKRTLGFSIPSLRPENLKLVTEEVAGIVRWK 75
Query: 127 RYLDHLIC-LLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRP 185
+YLD++I + D+ F MEP+L Q+LR+G YE++KL++P YAVV+E V+LA A R
Sbjct: 76 KYLDYVISNVYDKDQNEFERMEPILKQVLRLGSYELLKLEVPAYAVVNEAVKLANAASRA 135
Query: 186 GAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEE 245
GAG L N +LR + K+ N+LP+P++ GN R+QARAL TI+SHPVWMVRRWT G E+
Sbjct: 136 GAGKLANALLRAVASHKEKNTLPVPEVIGNLRSQARALGTIHSHPVWMVRRWTDRYGTED 195
Query: 246 AIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVI 305
+KLM WNN+ P ++LRAN+ G +R DL+ QL L+V + S L++F+RV +GLQ V+
Sbjct: 196 TLKLMEWNNTRPFYALRANNATGTSRDDLIEQLKKLEVSYVKSPLLEDFVRVTSGLQEVL 255
Query: 306 QAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAID 365
++GL+++G C VQDES GLVV ++DPQPG ++DCCAAPGGK+LY+AS L G+G V A+D
Sbjct: 256 RSGLIQQGRCTVQDESGGLVVELLDPQPGDLVIDCCAAPGGKSLYIASRLKGKGKVIAVD 315
Query: 366 INKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
INK RL++L ++AK V+ + + D R T D+VLLDAPCSGLGVLSK
Sbjct: 316 INKARLQLLKDSAKKAGVSEQVSVYNVDARDMIRGKTGLADRVLLDAPCSGLGVLSK 372
>gi|384252464|gb|EIE25940.1| S-adenosyl-L-methionine-dependent methyltransferase [Coccomyxa
subellipsoidea C-169]
Length = 452
Score = 261 bits (666), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 159/358 (44%), Positives = 218/358 (60%), Gaps = 15/358 (4%)
Query: 69 MRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRY 128
MRI GAF L+ GS + + + LD RD R VT++V G RWRR
Sbjct: 1 MRIDEEGAFVGLVG----GSPTRTQPHARKN--SPSAPLDSRDARFVTELVFGVTRWRRR 54
Query: 129 LDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAG 188
LD LI L T +++P LLQILR+G +E+++L P +A+ + +V LAK +RP A
Sbjct: 55 LDWLISQL---RPTGGALDPQLLQILRLGIFELLELRKPDWAI-NSHVDLAKELVRPEAA 110
Query: 189 NLVNGILRKLVLLKDNNSLPLPKLE-GNDRAQ-ARALATIYSHPVWMVRRWTKYLGQEEA 246
LVNG+LR L ++ N++P PKLE G ++Q A SHP W+V RW + G+ E
Sbjct: 111 RLVNGVLRNLTRMRTANAIPKPKLEPGFSQSQRADVFGIAASHPSWLVERWMQRFGEAET 170
Query: 247 IKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHL-DEFIRVKTGLQNVI 305
+KL+ NN P +SLR N+ K V L +L V E S +L +E++RV +GLQ V+
Sbjct: 171 LKLLASNNRRPVYSLRVNTMK-VDIGVLEQELQEGGVDVERSPYLPEEYLRVNSGLQEVL 229
Query: 306 QAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAID 365
GLLK+GLC VQDESAG+VV+++DPQPG+ ++D CAAPGGK L+ A+ + G+G + A D
Sbjct: 230 GQGLLKDGLCQVQDESAGMVVSLLDPQPGEHVLDACAAPGGKALFAAARMLGKGQLVAND 289
Query: 366 INKGRLRILNETAKLHQVNSVIRTI-HADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
N RLR L TA + + T+ ADLR + V D+VLLDAPCSGLGVL+K
Sbjct: 290 ANARRLRGLPGTAARQGLPAGFLTVGSADLREQSGQRHVPFDRVLLDAPCSGLGVLAK 347
>gi|294506884|ref|YP_003570942.1| ribosomal RNA small subunit methyltransferase B [Salinibacter ruber
M8]
gi|294343212|emb|CBH23990.1| Ribosomal RNA small subunit methyltransferase B [Salinibacter ruber
M8]
Length = 448
Score = 244 bits (623), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 146/367 (39%), Positives = 209/367 (56%), Gaps = 32/367 (8%)
Query: 57 VSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVT 116
VSP R + L R++ AF D L +D D R R
Sbjct: 8 VSPARVHALDHLERVRKDDAFVDKLT---------------------IEDADARTRRQAR 46
Query: 117 DIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENV 176
++V G R RR+LD ++ H + + SME L +ILR+G YE++ P +A VDE V
Sbjct: 47 ELVAGVTRQRRWLDFVLGEAYHGD--YDSMEHRLQEILRLGLYELLFQSTPTHAAVDEYV 104
Query: 177 RLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRR 236
LAK ALRPGAGNLVNG+LR + +D +P P G+D A LA YSHP WMV+R
Sbjct: 105 ELAKQALRPGAGNLVNGVLR--TIDRDREHIPTPDT-GDD---ANDLALRYSHPTWMVQR 158
Query: 237 WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIR 296
W G +E +L+ NN P +S+R N + + AD+ L+ V + S +LD ++R
Sbjct: 159 WLDRFGLDETTELLRANNRRPMYSVRINPLR-TSEADVAAWLDEHDVVNVDSPYLDRYLR 217
Query: 297 VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS 356
+K LQ +I LL +G AVQDESAGLVV ++DPQPG++++D CAAPGGK ++ A+ +
Sbjct: 218 LKR-LQALIAGDLLDDGHVAVQDESAGLVVQLLDPQPGETLIDGCAAPGGKAMHAAARME 276
Query: 357 GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCS 415
G G +YA+D ++ RL + A+ + ++ ADLR +A + D+VLLD PC+
Sbjct: 277 GTGTIYAVDRDEQRLERVETAAEAQGASEMVEAETADLRAWAGRPEPPQGDRVLLDVPCT 336
Query: 416 GLGVLSK 422
G+GVL+K
Sbjct: 337 GMGVLAK 343
>gi|83815307|ref|YP_445018.1| ribosomal RNA small subunit methyltransferase B [Salinibacter ruber
DSM 13855]
gi|83756701|gb|ABC44814.1| ribosomal RNA small subunit methyltransferase B [Salinibacter ruber
DSM 13855]
Length = 427
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 136/319 (42%), Positives = 196/319 (61%), Gaps = 11/319 (3%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+D D R R ++V G R RR+LD ++ H + + SME L +ILR+G YE++
Sbjct: 14 EDADARTRRQARELVAGVTRQRRWLDFVLGEAYHGD--YDSMEHRLQEILRLGLYELLFQ 71
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
P +A VDE V LAK ALRPGAGNLVNG+LR + +D +P P G+D A LA
Sbjct: 72 STPTHAAVDEYVELAKQALRPGAGNLVNGVLR--TIDRDREHIPTPDT-GDD---ANDLA 125
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
YSHP WMV+RW G +E +L+ NN P +S+R N + + AD+ L+ V
Sbjct: 126 LRYSHPTWMVQRWLDRFGLDETTELLRANNRRPMYSVRINPLR-TSEADVAAWLDEHDVV 184
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
+ S +LD ++R+K LQ +I LL +G AVQDESAGLVV ++DPQPG++++D CAAP
Sbjct: 185 NVDSPYLDRYLRLKR-LQALIAGDLLDDGHVAVQDESAGLVVQLLDPQPGETLIDGCAAP 243
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STV 403
GGK ++ A+ + G G +YA+D ++ RL + A+ + ++ ADLR +A
Sbjct: 244 GGKAMHAAARMEGTGTIYAVDRDEQRLERVETAAEAQGASEMVEAETADLRAWAARPEPP 303
Query: 404 KCDKVLLDAPCSGLGVLSK 422
+ D+VLLD PC+G+GVL+K
Sbjct: 304 QGDRVLLDVPCTGMGVLAK 322
>gi|302848840|ref|XP_002955951.1| hypothetical protein VOLCADRAFT_42105 [Volvox carteri f.
nagariensis]
gi|300258677|gb|EFJ42911.1| hypothetical protein VOLCADRAFT_42105 [Volvox carteri f.
nagariensis]
Length = 426
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 135/319 (42%), Positives = 198/319 (62%), Gaps = 14/319 (4%)
Query: 110 RDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPY 169
RD RLV ++V G R RR LD ++ L ++T + ME + Q+LR+G YE+ + + PY
Sbjct: 1 RDQRLVKELVAGVTRLRRRLDFVVANLT--QQTPADMESGVRQVLRLGVYELTERRLAPY 58
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A+ +E+V+LAKV PGAG+ VNG+LR + +LP P++ R LA +SH
Sbjct: 59 AL-NEHVQLAKVVSGPGAGSFVNGVLRSAARQVEAGTLPTPEVR-----PLRLLALQHSH 112
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANS-RKGVTRADLVMQLNLLKVPHELS 288
P W+V RW G++ L+ NN P +++R N+ R G + L+ QL + V E S
Sbjct: 113 PNWLVSRWLSRFGRQGTEALLRRNNMPPIYTVRVNTLRAGASVERLLGQLAAVGVEAEAS 172
Query: 289 -LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 347
L EFIR+++GLQ ++ G + +G VQDESAGLVV+++DPQPG+ ++DCCAAPGGK
Sbjct: 173 PLMPTEFIRIRSGLQKLLAEGFVSDGSLVVQDESAGLVVSLLDPQPGERLLDCCAAPGGK 232
Query: 348 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA---DNSTV- 403
TL+ A+ + G G + A+D++ RL L A+L V ++ T DLR D +T+
Sbjct: 233 TLFAAARMRGHGSITALDVSAPRLGALRRAAELAGVEDMVTTRAVDLRRRVRQPDTATMW 292
Query: 404 KCDKVLLDAPCSGLGVLSK 422
+ DKVLLDAPC+G GVL+K
Sbjct: 293 QYDKVLLDAPCTGTGVLAK 311
>gi|345303794|ref|YP_004825696.1| sun protein [Rhodothermus marinus SG0.5JP17-172]
gi|345113027|gb|AEN73859.1| sun protein [Rhodothermus marinus SG0.5JP17-172]
Length = 453
Score = 224 bits (570), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 132/335 (39%), Positives = 198/335 (59%), Gaps = 13/335 (3%)
Query: 90 DNEMGYVERTLGFR-TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP 148
+N+ YV R + T +L+ R T+ V G RWRR+LD L+ + + SMEP
Sbjct: 26 ENDQAYVNRLMSAGLTDELEPEAGRRATEYVAGVTRWRRWLDFLLA--QNYRGRYDSMEP 83
Query: 149 LLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLP 208
L QILR+G YE++ D PPYA ++E V LA+ +RP AG +VN +LR L+ +D
Sbjct: 84 RLRQILRLGLYELLFTDTPPYAALNEAVELARRLVRPQAGAVVNAVLRSLLRQRDF---- 139
Query: 209 LPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKG 268
LP+ + D + LA YSHP W+V+RW G + L+ +NN P F +R + +
Sbjct: 140 LPQPQTGDPVED--LAIRYSHPTWIVQRWLARYGPADTEALLRYNNERPWFGVRVRTDR- 196
Query: 269 VTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAV 328
++R ++ +L + E S LD+FIRV+ L +++ L+++GL AVQDESAGL V +
Sbjct: 197 ISRHVVLHRLADRGLEAEPSPVLDDFIRVQR-LGPLLEDRLIEKGLLAVQDESAGLAVRL 255
Query: 329 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 388
+DP P ++IVD CAAPGGKT Y+A+ + G V A D++ R ++ A + S++
Sbjct: 256 LDPHPDETIVDACAAPGGKTTYIATRMRDHGRVLAFDVHPKRTELIRRAALQQGLTSIV- 314
Query: 389 TIHADLRTFADN-STVKCDKVLLDAPCSGLGVLSK 422
DLR ++ ++ D+VLLD PCSGLGVL+K
Sbjct: 315 AEALDLRQVSERYPELQADRVLLDVPCSGLGVLAK 349
>gi|268316481|ref|YP_003290200.1| sun protein [Rhodothermus marinus DSM 4252]
gi|262334015|gb|ACY47812.1| sun protein [Rhodothermus marinus DSM 4252]
Length = 453
Score = 224 bits (570), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 132/335 (39%), Positives = 198/335 (59%), Gaps = 13/335 (3%)
Query: 90 DNEMGYVERTLGFR-TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP 148
+N+ YV R + T +L+ R T+ V G RWRR+LD L+ + + SMEP
Sbjct: 26 ENDQAYVNRLMSAGLTDELEPEAGRRATEYVAGVTRWRRWLDFLLA--QNYRGRYDSMEP 83
Query: 149 LLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLP 208
L QILR+G YE++ D PPYA ++E V LA+ +RP AG +VN +LR L+ +D
Sbjct: 84 RLRQILRLGLYELLFTDTPPYAALNEAVELARRLVRPQAGAVVNAVLRSLLRQRDF---- 139
Query: 209 LPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKG 268
LP+ + D + LA YSHP W+V+RW G + L+ +NN P F +R + +
Sbjct: 140 LPQPQTGDPVED--LAIRYSHPTWIVQRWLARYGPADTEALLRYNNERPWFGVRVRTDR- 196
Query: 269 VTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAV 328
++R ++ +L + E S LD+FIRV+ L +++ L+++GL AVQDESAGL V +
Sbjct: 197 ISRHVVLHRLADRGLEAEPSPVLDDFIRVQR-LGPLLEDRLIEKGLLAVQDESAGLAVRL 255
Query: 329 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 388
+DP P ++IVD CAAPGGKT Y+A+ + G V A D++ R ++ A + S++
Sbjct: 256 LDPHPDETIVDACAAPGGKTTYIATRMRDHGRVLAFDVHPKRTELIRRAALQQGLTSIV- 314
Query: 389 TIHADLRTFADN-STVKCDKVLLDAPCSGLGVLSK 422
DLR ++ ++ D+VLLD PCSGLGVL+K
Sbjct: 315 AEALDLRQVSERYPELQADRVLLDVPCSGLGVLAK 349
>gi|356553505|ref|XP_003545096.1| PREDICTED: LOW QUALITY PROTEIN: ribosomal RNA small subunit
methyltransferase B-like [Glycine max]
Length = 292
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 110/190 (57%), Positives = 130/190 (68%), Gaps = 22/190 (11%)
Query: 233 MVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLD 292
MVRRWTKYLGQEEAIKLM+WNNS+PSFSLR + L LH+
Sbjct: 1 MVRRWTKYLGQEEAIKLMIWNNSEPSFSLRFEQK------------------FALYLHIT 42
Query: 293 EFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMA 352
F K + GLLK+GLC+V AGLVV+VVDPQPG++I+DCCAAPGGKT YMA
Sbjct: 43 IFQYSKISFK----LGLLKKGLCSVPGGEAGLVVSVVDPQPGETIIDCCAAPGGKTHYMA 98
Query: 353 SCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 412
S LSGQG ++ +D+N G ETAKLHQV+ +I IHADLRT D+ +K +KVLLDA
Sbjct: 99 SHLSGQGKIFVVDVNSGXENSYKETAKLHQVDGIIIAIHADLRTLPDSGQLKSNKVLLDA 158
Query: 413 PCSGLGVLSK 422
PCSGLGVLSK
Sbjct: 159 PCSGLGVLSK 168
>gi|307102870|gb|EFN51136.1| hypothetical protein CHLNCDRAFT_8770, partial [Chlorella
variabilis]
Length = 425
Score = 198 bits (503), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 122/323 (37%), Positives = 172/323 (53%), Gaps = 15/323 (4%)
Query: 110 RDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPY 169
R R VT++V G RWRR LD + L + + ++ + LR+G YE+ +L +
Sbjct: 4 RQARGVTELVSGVTRWRRRLDFSLTQLLRG-RDVAQLDAPVRNALRLGLYELAELKNATH 62
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGND---RAQARALATI 226
V++ V L K GA N NG+LR + + +LP P + A LA
Sbjct: 63 GVINSYVDLVKSVQHQGAANATNGVLRNVARGLEAGTLPQPPRPAQGMPPQQAAEVLAVG 122
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHE 286
SHP W+V+RW G + L+ NN P ++LR GV QL V
Sbjct: 123 ASHPTWLVQRWLAQYGPAATLALLKHNNMRPRYALRLAP--GVDAEAFCRQLARSGVQAA 180
Query: 287 LSLHLD-EFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
S +L EF+ V GLQ ++ GL++ G QDE+AGLVVA +DPQPG++++D CAAPG
Sbjct: 181 PSRYLPREFVTVDRGLQALLVEGLVQRG--EAQDEAAGLVVAALDPQPGETLLDACAAPG 238
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA------D 399
GK L AS + G+GL+ A+D+++ RL L A ++RT ADLR FA +
Sbjct: 239 GKALGAASRMRGRGLITALDLSRSRLAALRHAALRQPHGDMVRTFAADLRRFATLRYRPE 298
Query: 400 NSTVKCDKVLLDAPCSGLGVLSK 422
+ D+VLLDAPCSG GVL+K
Sbjct: 299 GPPWQYDRVLLDAPCSGTGVLAK 321
>gi|269797911|ref|YP_003311811.1| sun protein [Veillonella parvula DSM 2008]
gi|269094540|gb|ACZ24531.1| sun protein [Veillonella parvula DSM 2008]
Length = 451
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 112/317 (35%), Positives = 188/317 (59%), Gaps = 11/317 (3%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D D R T++V G IR + YLD +I ++ + ++L+ILR+G Y+I+ +D
Sbjct: 43 LSDLDRRFFTELVYGVIRRKNYLDAIIVFFA--KRPIKKLSSMVLEILRLGIYQIIYMDK 100
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A V+E+V+LAK R G VN +LR + L++++S+ + +L +++A ++
Sbjct: 101 VPESAAVNESVKLAKKLTR-GLSGFVNAVLRSV--LRESDSISIGELA---KSEAEEISF 154
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
IY+ P+W+V W K +G+++ + L W N P + R N+ K V+ D + +L L
Sbjct: 155 IYNQPLWLVNFWIKEMGKDKTVDLCAWFNEQPRLTSRINTVK-VSIEDCLKELEDLDWIV 213
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
E ++ E + + ++ +A + +G D+++ LV VVDPQPG+ I+DCCAAPG
Sbjct: 214 EQDTYIPEVVYIDGHQGHLEKAKPVLDGHITFMDKASMLVAHVVDPQPGERILDCCAAPG 273
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405
GK+++MAS ++ G + + DI +L ++N+ A+ V S+I T D R DN +
Sbjct: 274 GKSMHMASLMNNTGAIMSCDIYDHKLELINQNAERLGV-SIISTKLQDGRYLPDNWKEQF 332
Query: 406 DKVLLDAPCSGLGVLSK 422
D+VL+DAPCSGLG+L K
Sbjct: 333 DRVLVDAPCSGLGILQK 349
>gi|294791792|ref|ZP_06756940.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
6_1_27]
gi|294457022|gb|EFG25384.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
6_1_27]
Length = 451
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 112/317 (35%), Positives = 188/317 (59%), Gaps = 11/317 (3%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D D R T++V G IR + YLD +I ++ + ++++ILR+G Y+I+ +D
Sbjct: 43 LSDLDRRFFTELVYGVIRRKNYLDAIIVHFA--KRPLKKLSSMVVEILRLGIYQIIYMDK 100
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A V+E+V+LAK R G VN +LR + L++++S+ + +L +++A ++
Sbjct: 101 VPESAAVNESVKLAKKLTR-GLSGFVNAVLRSV--LRESDSISIGELA---KSEAEEISF 154
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
IY+ P+W+V W K +G+++ + L W N P + R N+ K V+ D + +L L
Sbjct: 155 IYNQPLWLVNLWIKEMGKDKTVDLCSWFNEQPRLTARINTVK-VSIEDCLKELEDLDWIV 213
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
E ++ E + + ++ +A + EG D+++ LV VVDPQPG+ I+DCCAAPG
Sbjct: 214 EQDTYIPEVVYIDGHQGHLEKAKPVLEGHITFMDKASMLVAHVVDPQPGERILDCCAAPG 273
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405
GK+++MAS ++ G + + DI +L ++N+ A+ V S+I T D R DN +
Sbjct: 274 GKSMHMASLMNNTGAIMSCDIYDHKLELINQNAERLGV-SIISTKLQDGRYLPDNWKEQF 332
Query: 406 DKVLLDAPCSGLGVLSK 422
D+VL+DAPCSGLG+L K
Sbjct: 333 DRVLVDAPCSGLGILQK 349
>gi|282850140|ref|ZP_06259519.1| ribosomal RNA small subunit methyltransferase B [Veillonella
parvula ATCC 17745]
gi|294793653|ref|ZP_06758790.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
3_1_44]
gi|416998935|ref|ZP_11939604.1| ribosomal RNA small subunit methyltransferase B [Veillonella
parvula ACS-068-V-Sch12]
gi|282579633|gb|EFB85037.1| ribosomal RNA small subunit methyltransferase B [Veillonella
parvula ATCC 17745]
gi|294455223|gb|EFG23595.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
3_1_44]
gi|333977088|gb|EGL77947.1| ribosomal RNA small subunit methyltransferase B [Veillonella
parvula ACS-068-V-Sch12]
Length = 451
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 112/317 (35%), Positives = 188/317 (59%), Gaps = 11/317 (3%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D D R T++V G IR + YLD +I ++ + ++++ILR+G Y+I+ +D
Sbjct: 43 LSDLDRRFFTELVYGVIRRKNYLDAIIVHFA--KRPLKKLSSMVVEILRLGIYQIIYMDK 100
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A V+E+V+LAK R G VN +LR + L++++S+ + +L +++A ++
Sbjct: 101 VPESAAVNESVKLAKKLTR-GLSGFVNAVLRSV--LRESDSISIGELA---KSEAEEISF 154
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
IY+ P+W+V W K +G+++ + L W N P + R N+ K V+ D + +L L
Sbjct: 155 IYNQPLWLVNLWIKEMGKDKTVDLCSWFNEQPRLTARINTVK-VSIEDCLKELEDLDWIV 213
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
E ++ E + + ++ +A + EG D+++ LV VVDPQPG+ I+DCCAAPG
Sbjct: 214 EQDTYIPEVVYIDGHQGHLEKAKPVLEGHITFMDKASMLVAHVVDPQPGELILDCCAAPG 273
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405
GK+++MAS ++ G + + DI +L ++N+ A+ V S+I T D R DN +
Sbjct: 274 GKSMHMASLMNNTGAIMSCDIYDHKLELINQNAERLGV-SIISTKLQDGRYLPDNWKEQF 332
Query: 406 DKVLLDAPCSGLGVLSK 422
D+VL+DAPCSGLG+L K
Sbjct: 333 DRVLVDAPCSGLGILQK 349
>gi|313893390|ref|ZP_07826962.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
oral taxon 158 str. F0412]
gi|313442031|gb|EFR60451.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
oral taxon 158 str. F0412]
Length = 451
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 110/317 (34%), Positives = 186/317 (58%), Gaps = 11/317 (3%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D D R T++V G IR + YLD +I ++ + ++++ILR+G Y+I+ +D
Sbjct: 43 LSDLDRRFFTELVYGVIRRKNYLDAIIVHFA--KRPLKKLSSMVVEILRLGIYQIIYMDK 100
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A V+E+V+LAK R G VN +LR + L++ +S+ + +L +++A ++
Sbjct: 101 VPESAAVNESVKLAKKLTR-GLSGFVNAVLRSV--LRECDSISIGELA---KSEAEEISF 154
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
IY+ P+W+V W +G+++ + L W N P + R N+ K V+ D + +L L
Sbjct: 155 IYNQPLWLVNLWMNEMGKDKTVDLCAWFNEQPRLTARINTVK-VSIDDCIKELQNLGWTV 213
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
E + E + + + ++ +A + EG D+++ LV VVDPQPG+ I+DCCAAPG
Sbjct: 214 EQDKDIPEVVYINSHQGHLEKAKPVIEGHITFMDKASMLVAHVVDPQPGERILDCCAAPG 273
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405
GK+++MAS ++ G + + DI +L ++N+ A+ V S++ T D R DN +
Sbjct: 274 GKSMHMASLMNNTGAIMSCDIYDHKLDLMNQNAERLGV-SIVSTKLQDGRYLPDNWKEQF 332
Query: 406 DKVLLDAPCSGLGVLSK 422
D+VL+DAPCSGLG+L K
Sbjct: 333 DRVLVDAPCSGLGILQK 349
>gi|238019375|ref|ZP_04599801.1| hypothetical protein VEIDISOL_01239 [Veillonella dispar ATCC 17748]
gi|237864074|gb|EEP65364.1| hypothetical protein VEIDISOL_01239 [Veillonella dispar ATCC 17748]
Length = 451
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 109/317 (34%), Positives = 186/317 (58%), Gaps = 11/317 (3%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D D R T++V G IR + YLD +I ++ + ++++ILR+G Y+I+ +D
Sbjct: 43 LSDLDRRFFTELVYGVIRRKNYLDAIIIHFA--KRPLKKLSSMVVEILRLGIYQIIYMDK 100
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A V+E+V+LAK R G VN +LR + L++++S+ + +L +++A ++
Sbjct: 101 VPESAAVNESVKLAKNLTR-GLSGFVNAVLRSV--LRESDSISIGELA---KSEAEEISF 154
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
IY+ P+W+V W +G+++ I L W N P + R N+ K ++ D + +L L
Sbjct: 155 IYNQPLWLVNLWMNEMGKDKTIDLCAWFNEQPRLTARINTIK-ISIEDCLKELQDLGWTV 213
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
E ++ E + + ++ +A + +G D+++ LV VVDPQPG+ I+DCCAAPG
Sbjct: 214 EQDTYIPEVVYINAHQGHLEKAKPVIDGHITFMDKASMLVAHVVDPQPGERILDCCAAPG 273
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405
GK+++MAS ++ G + + DI +L ++N A+ V S++ T D R DN +
Sbjct: 274 GKSMHMASLMNNTGAIMSCDIYDHKLDLMNHNAQRLGV-SIVSTKLQDGRYLPDNWKEQF 332
Query: 406 DKVLLDAPCSGLGVLSK 422
D+VL+DAPCSGLG+L K
Sbjct: 333 DRVLVDAPCSGLGILQK 349
>gi|383754590|ref|YP_005433493.1| putative ribosomal RNA small subunit methyltransferase B
[Selenomonas ruminantium subsp. lactilytica TAM6421]
gi|381366642|dbj|BAL83470.1| putative ribosomal RNA small subunit methyltransferase B
[Selenomonas ruminantium subsp. lactilytica TAM6421]
Length = 444
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 121/322 (37%), Positives = 173/322 (53%), Gaps = 11/322 (3%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
R +L D+D R VT++V G ++ LD ++ + + + ++ +ILR+G Y+I
Sbjct: 30 LRKAELSDQDRRFVTELVYGAVKAGDTLDWILRRYVN--RPLKKIPTMVREILRLGLYQI 87
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
LD +P A + V LAK G VN +LR V + + P EG +A
Sbjct: 88 FYLDKVPASAACNTAVELAKKYSHAGTVKFVNAVLRTAVREPEKAAFP----EGKGKA-T 142
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
LA HP W+V+RW K G EEA KL ++N P S+R N+ K RA L+ L
Sbjct: 143 EGLALKSQHPYWLVKRWVKQFGFEEAEKLCAFDNGQPVLSVRTNTLK-TDRAALLTALQE 201
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ S E IRV T + L+EGLC VQDES+ LV VVDPQPG+ I+DC
Sbjct: 202 AGAEVQESQWTPEGIRV-TSHGALDDLAPLQEGLCQVQDESSMLVAHVVDPQPGELIIDC 260
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
C+APGGKT +MA+ + +G + A DI + +L + E A+ ++ +I T D R +
Sbjct: 261 CSAPGGKTTHMAALMKNEGRIVAGDIYEHKLTRIEENAQRLGID-IIETNLIDAREIGEE 319
Query: 401 STVKCDKVLLDAPCSGLGVLSK 422
D+VL+DAPCSGLGVL +
Sbjct: 320 YEDMADRVLVDAPCSGLGVLRR 341
>gi|428315935|ref|YP_007113817.1| sun protein [Oscillatoria nigro-viridis PCC 7112]
gi|428239615|gb|AFZ05401.1| sun protein [Oscillatoria nigro-viridis PCC 7112]
Length = 446
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 126/368 (34%), Positives = 186/368 (50%), Gaps = 34/368 (9%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L + GAFAD ++R F L+D D RLVT++V
Sbjct: 5 RQIAFLALREVHRRGAFAD--------------AALDR--AFSNSQLNDLDRRLVTELVY 48
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
G++R R +D +I L K S P L IL +G Y++ L+ +PP A V+ V+LA
Sbjct: 49 GSVRRMRSIDFIIDKLA--TKKSSQQPPELRTILHLGLYQLEYLNQIPPSAAVNTTVQLA 106
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
K G + VNG+LR+ + L DN+ PL N ++ L ++S P W+V+ W +
Sbjct: 107 KENGFSGLSSFVNGLLRQYIRLTDNDLNPL--TVTNYKSPVERLGILHSFPEWLVKLWIE 164
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSL----HLDEFI 295
+G+ E +L W N P+ LR N K + Q+ H +S HL + +
Sbjct: 165 QIGETETEQLCEWFNQSPTIDLRINPLKSS-----IAQIEAAFQTHNISTSRIPHLPQAL 219
Query: 296 RVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL 355
R+ + + EG +QD SA LV ++ PQPG++I+D CAAPGGKT + A +
Sbjct: 220 RLNGSIGAIQNLPGYSEGWWTIQDSSAQLVTHLLAPQPGETIIDACAAPGGKTTHSAELM 279
Query: 356 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH-ADLRTFADNSTVKCDKVLLDAPC 414
G +YA D RL+ L E A Q+ S+ IH D R F + + D+VLLDAPC
Sbjct: 280 QDTGTIYACDKTASRLKKLKENADRLQMKSI--KIHTGDSRHFPEFVNL-ADRVLLDAPC 336
Query: 415 SGLGVLSK 422
SGLG L +
Sbjct: 337 SGLGTLHR 344
>gi|375085444|ref|ZP_09732083.1| ribosomal RNA small subunit methyltransferase B [Megamonas
funiformis YIT 11815]
gi|374567314|gb|EHR38537.1| ribosomal RNA small subunit methyltransferase B [Megamonas
funiformis YIT 11815]
Length = 442
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 116/325 (35%), Positives = 181/325 (55%), Gaps = 19/325 (5%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ L D+D R +T++V GT++ L L L + + +EP ++ ILR+G Y+I
Sbjct: 29 LQKNQLSDQDRRFITELVYGTVKAGDTL--LWILKKFVNRPLNKIEPTIINILRLGIYQI 86
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
V +D +P A +E V LAK G+ VNG+LR L+ + ++P GN +A
Sbjct: 87 VFMDKIPESAACNEAVNLAKKYSNQGSAKFVNGVLRNLIRQPEKYAMP----TGN---KA 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL-- 278
LA HP+W+V+++ G E AIKL +NN++ LR N+ K TR +L+ +L
Sbjct: 140 SELAIREQHPLWLVKKFIHTFGSEAAIKLCQFNNTNAPLVLRTNTLK-TTRQELITELIN 198
Query: 279 -NLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 337
+P +L+ E I KT ++ Q L+ G VQDES+ LV VVDP+P + I
Sbjct: 199 AGCEVIPSKLA---PEGIICKTH-TSLNQLAPLQNGFAQVQDESSMLVAHVVDPKPNEFI 254
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397
+D C+APGGKT +MA+ + +G + A DI + +L+++ + A +N +I D R
Sbjct: 255 IDTCSAPGGKTTHMATLMQNKGKIIACDIYEHKLKLIQDNANRLGIN-IIEPKLLDAREI 313
Query: 398 ADNSTVKCDKVLLDAPCSGLGVLSK 422
+ + DKVL+DAPCSG+GVL +
Sbjct: 314 GNQYKNQADKVLVDAPCSGMGVLRR 338
>gi|379722975|ref|YP_005315106.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus
mucilaginosus 3016]
gi|378571647|gb|AFC31957.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus
mucilaginosus 3016]
Length = 541
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 120/352 (34%), Positives = 187/352 (53%), Gaps = 31/352 (8%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L T+IV GT++ +D+ + K S +EP + +LR+ FY++ LD +P +
Sbjct: 131 DAGLATEIVYGTLQRLNTIDYFLEGFV--SKGLSKLEPWVRSLLRLSFYQLYYLDRIPDH 188
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDN----NSLPLPKLEGNDRAQARALAT 225
AVV+E V +A+ G +VNG+LR ++ + LP PK +A
Sbjct: 189 AVVNEAVSMARRRGHQGISGMVNGVLRNVLRRRSELVLPEGLPAPKR----------IAL 238
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHP W+VRRW G+ A +L NN P SLRAN+RK ++R LV +L +
Sbjct: 239 SASHPEWLVRRWIAQFGEAAAERLCEANNEPPRVSLRANTRK-LSREALVERLRGEGLEA 297
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
E S + V+ G N+ EGL ++QDES+ LV VDPQPG+ ++DCCAAPG
Sbjct: 298 EPSPLAPAGVIVRGG-GNMALTQDYAEGLYSIQDESSMLVAEWVDPQPGERVLDCCAAPG 356
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405
GKT ++A + G+G + A D+++ + ++ E A + + I T+ AD R ++ +
Sbjct: 357 GKTTHLAEKMQGRGEIVACDVHEHKHGLIREQA-VRLGHESITTLTADARRLREHYAPES 415
Query: 406 -DKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
D++LLDAPCSGLGV+ + +++ KT + +C + LL
Sbjct: 416 FDRILLDAPCSGLGVIRRK----------PDMKWTKTEAELGEICSIQQELL 457
>gi|334118913|ref|ZP_08493001.1| sun protein [Microcoleus vaginatus FGP-2]
gi|333459143|gb|EGK87758.1| sun protein [Microcoleus vaginatus FGP-2]
Length = 449
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 124/368 (33%), Positives = 186/368 (50%), Gaps = 34/368 (9%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L + GAFAD ++R G L+D D RLVT++V
Sbjct: 5 RQIAFLALREVHRRGAFAD--------------AALDRAFG--NSQLNDLDRRLVTELVY 48
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
G++R R +D +I L K S P L IL +G Y++ L+ +PP A V+ V+LA
Sbjct: 49 GSVRRMRSIDFIIDKLA--TKKSSQQPPELRTILHLGLYQLEYLNQIPPSAAVNTTVQLA 106
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
K G + VNG+LR+ + L DN+ PL N ++ L ++S P W+V+ W +
Sbjct: 107 KENGFSGLSSFVNGLLRQYIRLTDNDLNPL--TVTNYKSTVERLGILHSFPEWLVKLWIE 164
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSL----HLDEFI 295
+G+ E +L W N P+ LR N K + Q+ H +S +L + +
Sbjct: 165 QIGETETEQLCEWFNQSPTIDLRINPLKSS-----IAQIEAAFKTHNISTSRIPNLPQAL 219
Query: 296 RVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL 355
R+ + + EG +QD SA LV ++ QPG++I+D CAAPGGKT + A +
Sbjct: 220 RLNGSIGAIQNLPGYSEGWWTIQDSSAQLVTHILGAQPGETIIDACAAPGGKTTHSAELM 279
Query: 356 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH-ADLRTFADNSTVKCDKVLLDAPC 414
+G +YA D RL+ L E A Q+ S+ IH D R F + + D+VLLDAPC
Sbjct: 280 QDEGTIYACDKTASRLKKLKENADRLQMKSI--KIHTGDSRHFPEFVNL-ADRVLLDAPC 336
Query: 415 SGLGVLSK 422
SGLG L +
Sbjct: 337 SGLGTLHR 344
>gi|386725760|ref|YP_006192086.1| 16S rRNA methyltransferase B [Paenibacillus mucilaginosus K02]
gi|384092885|gb|AFH64321.1| 16S rRNA methyltransferase B [Paenibacillus mucilaginosus K02]
Length = 505
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 123/348 (35%), Positives = 191/348 (54%), Gaps = 23/348 (6%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L T+IV GT++ +D+ + K S +EP + +LR+ FY++ LD +P +
Sbjct: 95 DAGLATEIVYGTLQRLNTIDYFLEGFV--SKGLSKLEPWVRSLLRLSFYQLYYLDRIPDH 152
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
AVV+E V +A+ G +VNG+LR + L+ + L LP EG + AL+ SH
Sbjct: 153 AVVNEAVSMARRRGHQGISGMVNGVLRNV--LRRRSELVLP--EGLPAPKRIALSA--SH 206
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSL 289
P W+VRRW G+ A +L NN P SLRAN+RK ++R LV +L + E S
Sbjct: 207 PEWLVRRWIAQFGEAAAERLCEANNEPPRVSLRANTRK-LSREALVERLRGEGLEAEPSP 265
Query: 290 HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 349
+ V+ G N+ EGL ++QDES+ LV VDPQPG+ ++DCCAAPGGKT
Sbjct: 266 LAPAGVIVRGG-GNMALTQDYAEGLYSIQDESSMLVAEWVDPQPGERVLDCCAAPGGKTT 324
Query: 350 YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKV 408
++A + G+G + A D+++ + ++ E A + + I T+ AD R ++ + D++
Sbjct: 325 HLAEKMQGRGEIVACDVHEHKHGLIREQA-VRLGHESITTLTADARRLREHYAPESFDRI 383
Query: 409 LLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
LLDAPCSGLGV+ + +++ KT + +C + LL
Sbjct: 384 LLDAPCSGLGVIRRK----------PDMKWTKTEAELGEICSIQQELL 421
>gi|238926271|ref|ZP_04658031.1| rRNA SAM-dependent methyltransferase RmsB [Selenomonas flueggei
ATCC 43531]
gi|238885951|gb|EEQ49589.1| rRNA SAM-dependent methyltransferase RmsB [Selenomonas flueggei
ATCC 43531]
Length = 449
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 117/323 (36%), Positives = 177/323 (54%), Gaps = 16/323 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
R + +RD R +T++V GT++ LD++I D K +P + ++LR+GFY+I
Sbjct: 39 LRIAQMTERDRRFLTELVYGTVKAGETLDYMIRRYVADLK---KAQPPIRELLRLGFYQI 95
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+D +P AV V LAK GA + VNG+LR + +LP +G+D A
Sbjct: 96 FFMDKIPSSAVCHTAVELAKKHGGKGAASFVNGVLRTALREPKRAALP----QGHD---A 148
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R+LA HPVWMV RW + G E L +N +LR N+ + +R L+ +L
Sbjct: 149 RSLALRMQHPVWMVERWLRDYGSERTETLCRCDNESAPLTLRTNTLR-TSRTALIERLTA 207
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQA-GLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 339
V E SL + E + + + A L+EGL VQDES+ LV V+ +PG +++D
Sbjct: 208 AGVRAEASLRVPESVLLHA--HGALDALAPLREGLAQVQDESSMLVAHVLGAEPGMTVID 265
Query: 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 399
CAAPGGKT ++A + +G ++A DI++ +LR + A+ + S+I T D R
Sbjct: 266 ACAAPGGKTTHIAQRMENRGRIWAFDIHEEKLRRIMRNAERLGI-SIIETQLLDAREVGA 324
Query: 400 NSTVKCDKVLLDAPCSGLGVLSK 422
+ V D+VL+DAPCSGLGVL +
Sbjct: 325 HYGVCADRVLVDAPCSGLGVLRR 347
>gi|337750137|ref|YP_004644299.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus
mucilaginosus KNP414]
gi|336301326|gb|AEI44429.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus
mucilaginosus KNP414]
Length = 485
Score = 181 bits (458), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 124/348 (35%), Positives = 190/348 (54%), Gaps = 23/348 (6%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L T+IV GT++ +D+ + K S +EP + +LR+ FY++ LD +P +
Sbjct: 75 DAGLATEIVYGTLQRLNTIDYFLEGFV--SKGLSKLEPWVRSLLRLSFYQLYYLDRIPDH 132
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
AVV+E V +A+ G +VNG+LR + L+ + L LP EG + AL+ SH
Sbjct: 133 AVVNEAVSMARRRGHQGISGMVNGVLRNV--LRRRSELVLP--EGLPAPKRIALSA--SH 186
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSL 289
P W+VRRW G+ A +L NN P SLRAN+RK ++R LV +L + E S
Sbjct: 187 PEWLVRRWIAQFGEAAAERLCEANNEPPRVSLRANTRK-LSREALVERLRGEGLEAEPSP 245
Query: 290 HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 349
+ V+ G N+ EGL ++QDES+ LV VDPQPG+ ++DCCAAPGGKT
Sbjct: 246 LAPAGVIVRGG-GNMALTQDYAEGLYSIQDESSMLVAEWVDPQPGERVLDCCAAPGGKTT 304
Query: 350 YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKV 408
++A + G+G + A D+++ + ++ E A S I T+ AD R ++ + D++
Sbjct: 305 HLAEKMQGRGEIVACDVHEHKHGLIREQADRLGHES-ITTLTADARRLPEHYAPESFDRI 363
Query: 409 LLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
LLDAPCSGLGV+ + +++ KT + +C + LL
Sbjct: 364 LLDAPCSGLGVIRRK----------PDMKWTKTEAELGDICSIQQELL 401
>gi|452992003|emb|CCQ96625.1| Ribosomal RNA small subunit methyltransferase B [Clostridium
ultunense Esp]
Length = 453
Score = 181 bits (458), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 126/390 (32%), Positives = 201/390 (51%), Gaps = 38/390 (9%)
Query: 68 LMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRR 127
L+RI+ GA+++LL + ++R+ G R D D RL T++V G + R
Sbjct: 17 LLRIEEEGAYSNLLLRTA----------LDRS-GMR-----DADKRLATELVYGVLTHRL 60
Query: 128 YLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPG 186
LD+ I + + +EP + +LR+ FY+++ LD +PPYA+V+E V+ AK G
Sbjct: 61 RLDYAIR--PYLSRPLEKLEPWVRLLLRLSFYQLLYLDKIPPYAIVNEAVKSAKRRGHEG 118
Query: 187 AGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEA 246
L+NG+LR + +P D AR L+ +YSHP WMV+RW K G+E+
Sbjct: 119 IARLINGVLRSYLREPTKGEIP------PDLPPARRLSLLYSHPEWMVKRWLKQYGEEKT 172
Query: 247 IKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQ 306
++ NN+ +LR N + TR +L+ + SL + IRV TG N
Sbjct: 173 EAMLSANNAPSPLTLRINPLR-TTREELLSFFKEEGLEAMPSLLSPQGIRV-TGGGNPAA 230
Query: 307 AGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDI 366
+ GL ++QDES+ LV ++ P+ GQ ++D CAAPGGKT ++A + +G + A DI
Sbjct: 231 MPEYRLGLYSIQDESSMLVATLLKPEAGQRVLDACAAPGGKTSHIAELMKDEGEILANDI 290
Query: 367 NKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKTCVG 426
+ + ++ E K S I+ + D T + D++L+DAPCSGLGV+ +
Sbjct: 291 HPHKGSLIEEQKKRLGFTS-IQVMTGDALTLPERVKGPFDRILIDAPCSGLGVIRRK--- 346
Query: 427 IGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
+++ K + HL E +Y LL
Sbjct: 347 -------PEIKWRKEERELSHLPELQYALL 369
>gi|427414320|ref|ZP_18904510.1| ribosomal RNA small subunit methyltransferase B [Veillonella ratti
ACS-216-V-Col6b]
gi|425714696|gb|EKU77699.1| ribosomal RNA small subunit methyltransferase B [Veillonella ratti
ACS-216-V-Col6b]
Length = 449
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 110/317 (34%), Positives = 176/317 (55%), Gaps = 11/317 (3%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D D R T++V G +R R YLD +I L ++ + ++++ILR+G Y+++ +D
Sbjct: 41 LSDIDRRFFTELVYGVVRRRNYLDAIIAALA--KRPLRKLSSIVVEILRLGLYQLIYMDK 98
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A V+E+V+LAK R G VNG+LR L++ +S + +L N + LA
Sbjct: 99 VPDSAAVNESVKLAKKMAR-GLDGFVNGVLRNF--LRNRDSYSIDELAKN---EVERLAY 152
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
IY+ PVW++ W K G+ E I L W N P + R N+ K + AD + L
Sbjct: 153 IYNQPVWLLDLWLKTYGETETIGLCTWFNERPRLTARINTLK-TSVADGMSALEKAGWLA 211
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
E + L E + + ++ A ++K GL DE++ V VVDP+PG+ ++DCCAAPG
Sbjct: 212 EATGKLPEAVHITHHTGSLESAPIVKAGLITFTDEASMAVAYVVDPKPGEKVLDCCAAPG 271
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405
GKT+++A+ ++ +G + A DI++ +L ++ AK V + D +
Sbjct: 272 GKTMHLAARMNNEGQIVADDIHEHKLGLMEANAKRLGVTIADFNLQ-DATKLPQTWYNQF 330
Query: 406 DKVLLDAPCSGLGVLSK 422
DKVL+DAPCSGLG+L +
Sbjct: 331 DKVLVDAPCSGLGILQR 347
>gi|427405969|ref|ZP_18896174.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
F0473]
gi|425708810|gb|EKU71849.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
F0473]
Length = 451
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 124/343 (36%), Positives = 173/343 (50%), Gaps = 31/343 (9%)
Query: 91 NEMGYVERTL--GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP 148
NE Y L RT L DRD R +T++V GT++ LD++I D ++P
Sbjct: 27 NEGAYANVALVRAMRTARLTDRDRRFLTELVYGTVKAGDTLDYMIAQYLTD--GIERVQP 84
Query: 149 LLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSL 207
+ +ILRIG Y++ ++ +P A D V LAK R GA + VN +LR V +
Sbjct: 85 QIREILRIGIYQLFFMNKVPASAACDTAVELAKKYGRRGADSFVNAVLRTAVRTPGRAEI 144
Query: 208 PLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK 267
P G D AR LA HP+WMV RW + G E +L NN+ SLR N+ +
Sbjct: 145 P----AGRD---ARLLALRTQHPLWMVERWIRAYGYERTEELCRCNNTSAPLSLRVNTLR 197
Query: 268 GVTRADLVMQL---NLLKVPHELSLHLDEFIRVKTGLQNVIQAGL-----LKEGLCAVQD 319
TR L+ QL + VP E RV G+ GL L+EGLC VQD
Sbjct: 198 -TTRDALLAQLWAAGVTAVPSE---------RVPDGIVVTGHGGLDALTPLREGLCQVQD 247
Query: 320 ESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK 379
ES+ LV V+ PG +++D CAAPGGK ++A + +G + A DI +G++ + AK
Sbjct: 248 ESSMLVAHVLGAAPGMTVIDACAAPGGKATHIAQLMENRGHIRAFDIYEGKISRIENNAK 307
Query: 380 LHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
++ +I T D R D+VL+DAPCSG GVL +
Sbjct: 308 RLGID-IIETAVRDAREIGVRFAGTADRVLVDAPCSGFGVLRR 349
>gi|119487592|ref|ZP_01621202.1| Fmu, rRNA SAM-dependent methyltransferase [Lyngbya sp. PCC 8106]
gi|119455761|gb|EAW36897.1| Fmu, rRNA SAM-dependent methyltransferase [Lyngbya sp. PCC 8106]
Length = 450
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 112/323 (34%), Positives = 169/323 (52%), Gaps = 6/323 (1%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYE 160
R DL + RL T++V G +R RR LD LI +K P L IL +GFY+
Sbjct: 30 NLRKADLSAVNRRLTTELVYGCVRRRRSLDALIDQFA--QKKSHQQPPDLRIILHLGFYQ 87
Query: 161 IVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
+ L +P A V+ +V LAK G VNGILR+ + ++ + P L D
Sbjct: 88 LYYLSQIPASAAVNTSVELAKTNGLSGLSGFVNGILREYLRQQEKQTQNRPILRLEDENL 147
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
+ L +YS P W++ W LG EE KL W N P+ LR N+ K +R + +L
Sbjct: 148 IQTLGNLYSFPDWILEYWLNQLGLEETEKLCQWFNQSPTIDLRINALK-TSRDTVETELK 206
Query: 280 LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 339
L + HL + +R+ + + ++G ++QD SA V ++DPQPG+ I+D
Sbjct: 207 LAGINVTPIPHLSQALRLSGSIGEIQNLPGYRQGWWSIQDSSAQWVSHILDPQPGEIIID 266
Query: 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 399
CAAPGGKT ++A + G + A D K RL+ + + + Q+ S+ + AD+R ++
Sbjct: 267 ACAAPGGKTTHIAELMQDTGTILAFDRAKSRLKKVQQNQERLQLKSITTQL-ADIRELSE 325
Query: 400 NSTVKCDKVLLDAPCSGLGVLSK 422
++ D+VLLDAPCSGLG L +
Sbjct: 326 YNSC-ADRVLLDAPCSGLGTLHR 347
>gi|304437063|ref|ZP_07397026.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
oral taxon 149 str. 67H29BP]
gi|304370014|gb|EFM23676.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
oral taxon 149 str. 67H29BP]
Length = 449
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 122/325 (37%), Positives = 180/325 (55%), Gaps = 18/325 (5%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYE 160
R + +RD R +T++V GT++ LD +I D K +P + ++LR+GFY+
Sbjct: 38 ALRGAAMAERDRRFLTELVYGTVKAGETLDVMIRRYVADLK---KAQPPIRELLRLGFYQ 94
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
I +D +P AV V LAK GA + VNG+LR L++ LPK G D
Sbjct: 95 IFFMDKIPSSAVCHTAVELAKKHGGKGAASFVNGVLR--TALREPQRAALPK--GRD--- 147
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
AR+LA HPVWMV+RW G EEA +L +N +LR N+ + +R L+ +L
Sbjct: 148 ARSLALRMQHPVWMVKRWLHDYGYEEAERLCRCDNESAPLTLRTNTLR-TSRTALMERLT 206
Query: 280 LLKVPHELSLHLDEFIRVKT-GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 338
V + SL + E I ++T G + + L+EGL VQDES+ LV ++ +PG +++
Sbjct: 207 AAGVRADASLRVPEGILLRTHGALDALAP--LREGLAQVQDESSMLVAYILGAEPGMTVI 264
Query: 339 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRL-RILNETAKLHQVNSVIRTIHADLRTF 397
D CAAPGGKT ++A + +G + A DI + +L RI+ +L S+I T D R
Sbjct: 265 DACAAPGGKTTHIAQRMENRGRILAFDIYEEKLGRIMRNAERLG--ISIIETQLLDAREI 322
Query: 398 ADNSTVKCDKVLLDAPCSGLGVLSK 422
+ V D+VL+DAPCSGLGVL +
Sbjct: 323 GAHYGVCADRVLVDAPCSGLGVLRR 347
>gi|357012410|ref|ZP_09077409.1| 16S rRNA methyltransferase B [Paenibacillus elgii B69]
Length = 494
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 121/352 (34%), Positives = 192/352 (54%), Gaps = 23/352 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD D L T+IV GT++ +D + K + ++P + +LR+ FY++ LD
Sbjct: 82 LDKPDAGLATEIVYGTVQRLGTIDFFLERFV--SKGLAKLQPWVRNLLRLSFYQLHYLDR 139
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+V+E V +AK G +VNG+LR + L+ + L LP G Q ALA
Sbjct: 140 IPDHAIVNEAVNIAKRRGHQGISGMVNGVLRSV--LRSKSELVLPA--GLPAEQRIALAQ 195
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHP W+VR W + G+ A +L NN+ P SLRAN K + +L +L +
Sbjct: 196 --SHPEWLVRHWVREFGERTAERLCEANNTSPRVSLRANGLK-LGPGELAERLRQGGLEA 252
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
E S + V+ G N+ + GL +VQDES+ LV VDPQPG+ ++DCCAAPG
Sbjct: 253 EPSAVAPAGVIVRGG-GNMALSPDYAAGLYSVQDESSMLVAEWVDPQPGERVLDCCAAPG 311
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405
GKT ++A + +G + A D+++ + +++ E A+ + S IRT+ AD R A++ +
Sbjct: 312 GKTTHLAEKMGDRGEIVACDVHEHKRKLIEEQAERLALRS-IRTLTADARRLAEHFAPES 370
Query: 406 -DKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
D++LLDAPCSGLGV+ + +++ K+ + +C+ + LL
Sbjct: 371 FDRILLDAPCSGLGVIRRK----------PDMKWSKSEAELAEICDIQRELL 412
>gi|402574141|ref|YP_006623484.1| NusB antitermination factor [Desulfosporosinus meridiei DSM 13257]
gi|402255338|gb|AFQ45613.1| NusB antitermination factor [Desulfosporosinus meridiei DSM 13257]
Length = 454
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 124/363 (34%), Positives = 194/363 (53%), Gaps = 30/363 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ L R++ GA+A+LL +K ++ D RD + VT +V
Sbjct: 7 RGMAVNLLTRVEVEGAYANLLLQKNI-----------------SRLTDSRDRQFVTLLVN 49
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
G ++ R LD+ L H K SS+ + ILRIG ++I+ +D +PP A ++E+V LA
Sbjct: 50 GVLKHRLTLDY--ALRKHLSKPMSSLPHEVRAILRIGAFQILYVDKVPPAAAINESVELA 107
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
K P LVN +LRK+ ++ +P P L+ R AR L+ YSHP W++ RW K
Sbjct: 108 KNY--PKFPGLVNVVLRKV--MEKGWDIPWPDLK---REPARYLSVRYSHPEWLILRWLK 160
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKT 299
G +E L NN +R N+ K ++R L +L + EL L + E ++++
Sbjct: 161 RWGAQETEALCKVNNEPAQTWIRTNTLK-ISREALKERLISEGISVELGLLVPESLKIQD 219
Query: 300 GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQG 359
+ Q +EGL VQDES+ LV VVDP+PGQS++D C+APGGK+ ++A + +G
Sbjct: 220 -FGALEQLASFQEGLFTVQDESSQLVAHVVDPKPGQSVLDTCSAPGGKSTHLAQLMQNKG 278
Query: 360 LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGV 419
+ A DI+ +L ++ + A + ++I+ D R D+VL+D PCSGLGV
Sbjct: 279 EIQAFDIHNHKLELIGQLATKLGI-TIIQPQFGDARDLPGIRLESQDRVLVDVPCSGLGV 337
Query: 420 LSK 422
L +
Sbjct: 338 LRR 340
>gi|284047695|ref|YP_003398034.1| sun protein [Acidaminococcus fermentans DSM 20731]
gi|283951916|gb|ADB46719.1| sun protein [Acidaminococcus fermentans DSM 20731]
Length = 446
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 120/331 (36%), Positives = 181/331 (54%), Gaps = 27/331 (8%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYE 160
G R L D +L T++V GT++ LD + + + + ++PL+L ILR+G Y+
Sbjct: 33 GLRGATLSPLDRKLTTELVYGTVKTMGTLDWYLSRVVN--RPLRKLDPLVLVILRLGAYQ 90
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
++ LD +P A +E+V+LAK + GAG LVNG LR+L +D P +G D
Sbjct: 91 LLYLDRIPASAACNESVKLAKKWVHEGAGKLVNGALRQLARTRDQWKFP----QGPDHEL 146
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL- 278
R +A Y HP W+VRRW G EEA+KL ++N+ P+FS R N+ + TR L +L
Sbjct: 147 ER-IALEYYHPEWLVRRWKFRYGLEEAVKLCAFDNARPAFSFRVNTLRD-TREGLQEKLA 204
Query: 279 --NLLKVPHELSLHLDEFIRVKTGL--QNVIQAGLLKEGL---CAVQDESAGLVVAVVDP 331
+ P + S GL ++ L EG +QDES+ L AV+DP
Sbjct: 205 EKGIRTRPSQWS---------PDGLLCDSLPSLDDLVEGFGPDIYIQDESSMLDAAVLDP 255
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
QPG+ ++D C+APGGKT ++A + QG + A+D+ +L ++ E A+ ++ IRT
Sbjct: 256 QPGERVLDLCSAPGGKTTHLAQKMQDQGEILALDLYDHKLDLVRENARRLGIH-CIRTEK 314
Query: 392 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
D F +VL+DAPCSGLGVL++
Sbjct: 315 QDGTVFVPEWENTAHRVLVDAPCSGLGVLNR 345
>gi|403378883|ref|ZP_10920940.1| 16S rRNA methyltransferase B [Paenibacillus sp. JC66]
Length = 457
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 114/327 (34%), Positives = 179/327 (54%), Gaps = 21/327 (6%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ L+ D T++V GT++ + +D+ + K ++ +EP + +LRI FY++
Sbjct: 39 LKQSGLERLDAAFATELVYGTLQHQLTIDYYLQKFV--AKGWAKLEPWVRNLLRISFYQL 96
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKL----VLLKDNNSLPLPKLEGND 216
LD +P +A ++E V LAK G +VNG+LR + L+ +SLPL K
Sbjct: 97 YYLDRVPAHAAINEAVELAKRLGHRGISGMVNGVLRNVERQKASLEIPDSLPLVK----- 151
Query: 217 RAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM 276
L+ YSHP WM+++W G+EE ++ NN P S+R + K TR L+
Sbjct: 152 -----RLSLTYSHPEWMIKQWLGSFGEEETARICQANNEPPHASIRVSPGK-RTREQLLA 205
Query: 277 QLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 336
+L + S I V+ N+ +EGL +QDES+ LV VDP+PG S
Sbjct: 206 ELQEQGIDASPSPLSAAGIVVRQA-GNMADTDGYREGLFTIQDESSMLVGEAVDPRPGMS 264
Query: 337 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396
++DCCAAPGGKT +MA ++ QG+V DI++ + ++ + A+ + S I+T+ AD RT
Sbjct: 265 VLDCCAAPGGKTTHMAELMNDQGMVIGCDIHEHKEALIRKQAQRLGLTS-IQTLAADART 323
Query: 397 FADNSTVKC-DKVLLDAPCSGLGVLSK 422
+ + D+VLLDAPCSGLGV+ +
Sbjct: 324 LSGRFPAESFDRVLLDAPCSGLGVIRR 350
>gi|292670256|ref|ZP_06603682.1| RNA methyltransferase Sun [Selenomonas noxia ATCC 43541]
gi|292648208|gb|EFF66180.1| RNA methyltransferase Sun [Selenomonas noxia ATCC 43541]
Length = 448
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 113/316 (35%), Positives = 171/316 (54%), Gaps = 16/316 (5%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MP 167
+RD R +T++V G ++ +D++I D +P + +LR+GFY+I +D +P
Sbjct: 45 ERDRRFLTELVYGVVKAGDTIDYMIGKYVSD---LRKAQPAIRTLLRLGFYQIFFMDKIP 101
Query: 168 PYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIY 227
A + V LAK R GA + VNG+LR L++ LPK G D AR+LA
Sbjct: 102 VSAACNTAVELAKKYGRRGAASFVNGVLR--TALREPERAALPK--GRD---ARSLALRE 154
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHEL 287
HP+WM RW + G E A L NN+ S+R N+ + ++R L+ + V
Sbjct: 155 QHPLWMTERWVRAYGYERAEALCRCNNTSAPLSVRTNTLR-ISRTQLIEKFKAAGVKART 213
Query: 288 SLHLDEFIRVKT-GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 346
S + E + ++ G NV+ L EGL VQDES+ LV V+ P+PG +++D CAAPGG
Sbjct: 214 SAWVPEGVILRAHGALNVLAP--LHEGLAQVQDESSMLVTHVLAPEPGMTVIDACAAPGG 271
Query: 347 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 406
KT ++A + G + A DI + ++R + AK + S+I D R + + D
Sbjct: 272 KTTHIAQRMENCGRILAFDIYEEKIRRIERNAKRLGI-SIIEAAVLDAREIGAHYKEQAD 330
Query: 407 KVLLDAPCSGLGVLSK 422
+VL+DAPCSGLGVL +
Sbjct: 331 RVLVDAPCSGLGVLRR 346
>gi|422344990|ref|ZP_16425913.1| ribosomal RNA small subunit methyltransferase B [Selenomonas noxia
F0398]
gi|355376132|gb|EHG23393.1| ribosomal RNA small subunit methyltransferase B [Selenomonas noxia
F0398]
Length = 448
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 115/323 (35%), Positives = 172/323 (53%), Gaps = 16/323 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
R +RD R +T++V G ++ +D++I D +P + +LR+GFY+I
Sbjct: 38 LRAAQPTERDRRFLTELVYGVVKAGDTIDYMIGKYVSD---LRKAQPAIRTLLRLGFYQI 94
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+D +P A + V LAK R GA + VNG+LR L++ LPK G D A
Sbjct: 95 FFMDKIPVSAACNTAVELAKKYGRRGAASFVNGVLR--TALREPERAALPK--GRD---A 147
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R+LA HP+WM RW + G E A L NN+ S+R N+ ++R L+ +
Sbjct: 148 RSLALREQHPLWMTERWVRAYGYERAEALCRCNNTSAPLSVRTNT-LCISRTQLIEKFET 206
Query: 281 LKVPHELSLHLDEFIRVKT-GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 339
V S + E + ++ G NV+ L EGL VQ ES+ LV V+ P+PG +++D
Sbjct: 207 AGVKARTSAWVPEGVILRAHGALNVLAP--LHEGLAQVQGESSMLVAHVLAPEPGMTVID 264
Query: 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 399
CAAPGGKT ++A + +G + A DI + ++R + AK V S+I T D R
Sbjct: 265 ACAAPGGKTTHIAQRMENRGRILAFDIYEEKIRRIERNAKRLSV-SIIETAVLDAREIGV 323
Query: 400 NSTVKCDKVLLDAPCSGLGVLSK 422
+ + D+VL+DAPCSGLGVL +
Sbjct: 324 HYKEQADRVLVDAPCSGLGVLRR 346
>gi|365839611|ref|ZP_09380846.1| ribosomal RNA small subunit methyltransferase B [Anaeroglobus
geminatus F0357]
gi|364564452|gb|EHM42219.1| ribosomal RNA small subunit methyltransferase B [Anaeroglobus
geminatus F0357]
Length = 443
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 119/352 (33%), Positives = 186/352 (52%), Gaps = 21/352 (5%)
Query: 75 GAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLIC 134
AF LL G N + V +T+ + ++ DDRD R T++V GT+R YLDH+I
Sbjct: 8 AAFHSLLAVCKDGGYSNII--VSKTI--QKQNFDDRDRRFYTELVYGTLRTLNYLDHIIS 63
Query: 135 LLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNG 193
+ + ++P+ L ILR G Y++ +D +PP A +E V+ A+ G VN
Sbjct: 64 TV--STRDIKKLDPVCLAILRCGLYQLFFMDKVPPSAACNEAVKTARRFGNAGMAKFVNA 121
Query: 194 ILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWN 253
+LR + K+ ++P P + L+ Y P W+VR+W K G+EE L +
Sbjct: 122 LLRNSLRKKETFTVPTPTEDA-----ILHLSLTYHQPAWLVRKWVKDFGREETTALCRYF 176
Query: 254 NSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDE--FIRVKTGLQNVIQAGLLK 311
+ P +R N+ + A L+ VP +LH E ++ G++ + + +
Sbjct: 177 DRVPDLCIRTNTTRTTREA-LMTLFTQKGVPCRCALHAPEGIYLEKNPGIRTLTE---IA 232
Query: 312 EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQG-LVYAIDINKGR 370
GL +QDE + LV VV PQ G+ I D CAAPGGKT ++A+ L G+G LVY DI + +
Sbjct: 233 GGLGMIQDEPSQLVAHVVAPQAGEVIFDVCAAPGGKTTHLAA-LGGRGCLVYGFDIYEHK 291
Query: 371 LRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
L+++ E A++ + + IRT+ D K D+VL+DAPCSGLG+L +
Sbjct: 292 LKLIKENARMLGLEN-IRTVLQDAVLLGRKYAAKADRVLVDAPCSGLGILRR 342
>gi|430750393|ref|YP_007213301.1| ribosomal RNA small subunit methyltransferase RsmB [Thermobacillus
composti KWC4]
gi|430734358|gb|AGA58303.1| ribosomal RNA small subunit methyltransferase RsmB [Thermobacillus
composti KWC4]
Length = 459
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 123/357 (34%), Positives = 189/357 (52%), Gaps = 29/357 (8%)
Query: 68 LMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRR 127
L+R++ GA++++ + RTL R+ L D L T++V GTI+ R
Sbjct: 17 LLRVEREGAYSNI--------------ELNRTL--RSAGLSRTDTGLATELVYGTIQRRL 60
Query: 128 YLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPG 186
LD+ + + ++P +L +LR+ Y++V LD +PP+A V E V++AK PG
Sbjct: 61 TLDYWLARFV--ARGLDKLQPWVLTLLRMSLYQLVYLDRVPPHAAVGEAVKIAKKRGHPG 118
Query: 187 AGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEA 246
+LVNG+LR L +D +LP +D AR L+ +S P WM RW + G+E A
Sbjct: 119 VVSLVNGVLRSLAGCRDELTLP------DDPDPARRLSLKHSFPEWMAARWIESYGEETA 172
Query: 247 IKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQ 306
K+M N P S+R N +G R+ ++ +L +LSL I ++ G N+
Sbjct: 173 DKIMAALNERPKTSIRVNRLRGGRRS-VLERLKAEGYDAKLSLITQAGIVIRRG-GNLAG 230
Query: 307 AGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDI 366
++G VQDE+A LV DP+PG ++DCCAAPGGK+ ++A + G+V A DI
Sbjct: 231 TDGYRDGEWTVQDEAAMLVAEACDPEPGMRVLDCCAAPGGKSTHLAELMGDVGVVLANDI 290
Query: 367 NKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAPCSGLGVLSK 422
+ + R++ E A+ + SV RT D + D VLLDAPCSG GV+ +
Sbjct: 291 HPHKERLIVEQAQRLGLTSV-RTSVCDAAELPRRVGAESMDIVLLDAPCSGFGVIRR 346
>gi|342214380|ref|ZP_08707078.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
oral taxon 780 str. F0422]
gi|341593929|gb|EGS36741.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
oral taxon 780 str. F0422]
Length = 452
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/317 (33%), Positives = 177/317 (55%), Gaps = 11/317 (3%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L+D D R T++V G +R + YLD +I +K + P +L+ILR+G Y+++ +D
Sbjct: 43 LEDLDRRFFTELVYGVVRRKNYLDAVIVHFT--KKPVKKLSPFVLEILRLGVYQLLYMDK 100
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A V+E+V+LAK + PG VN +LR + +++ + + ++A ++
Sbjct: 101 VPSSAAVNESVKLAK-KVAPGTDRFVNALLRNVDRQREDIGV-----DALASSEAERISY 154
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
IY+ P+W+VR W + G EE I L W N P + R N+ + ++R DL+ +L+
Sbjct: 155 IYNQPLWLVRLWIEQRGLEETIDLCEWFNETPLLTARVNTLR-ISRHDLLEELSQANWVV 213
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
E S + + I +K+ + +A ++EGL DE++ V V P+ I+D CAAPG
Sbjct: 214 EPSHMIPDAIIIKSHKGQLQEAKWVQEGLMTFMDEASMAVAYAVQPKQHMHILDTCAAPG 273
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405
GKTL+MA+ + G + A DI++ ++ +L AK ++++V + D +
Sbjct: 274 GKTLHMATLMDNTGTIVATDIHEHKVELLQANAKRMKISNV-QPQQGDATVKEEQWKESF 332
Query: 406 DKVLLDAPCSGLGVLSK 422
D VL+DAPCSGLG+L K
Sbjct: 333 DAVLVDAPCSGLGILQK 349
>gi|397690734|ref|YP_006527988.1| Ribosomal RNA small subunit methyltransferase B [Melioribacter
roseus P3M]
gi|395812226|gb|AFN74975.1| Ribosomal RNA small subunit methyltransferase B [Melioribacter
roseus P3M]
Length = 457
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 118/336 (35%), Positives = 175/336 (52%), Gaps = 15/336 (4%)
Query: 90 DNEMGYVERTLGFRTKD--LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
D Y+++ L K+ L D L+ +IV G +RW LD ++ + FS
Sbjct: 30 DRTDAYLDKLLEIELKNSNLSSLDKALLFEIVHGVMRWMGRLDWILTGFYKGQ--FSKCV 87
Query: 148 PLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
P + LR+ Y+I+ LD +P YA V+E V K +L N +LR ++ KD
Sbjct: 88 PNVKNALRVALYQILFLDKVPDYAAVNEAVEFVKKLQGQKYADLANALLRNIIRNKDGIR 147
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
P P + L+ YSHP WMV+RW G+E KL+ NNS P +LR N+
Sbjct: 148 YPDP-----EEDLVAYLSAYYSHPSWMVKRWLARFGRENTEKLLAANNSKPVLALRVNNL 202
Query: 267 KGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVV 326
T +L L+ +++ + S L EFIR+ L N+ K G VQDES GL V
Sbjct: 203 V-TTMEELKKLLDEVELRYTDSKLLPEFIRL-NNLVNITDWKYFKLGYFTVQDESTGLPV 260
Query: 327 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV 386
++ P+PG ++D CAAPGGK+ ++A + +G + A+D RL+IL + + +V +V
Sbjct: 261 KLLKPEPGMRVLDLCAAPGGKSAFIADMMKNEGEIVALDRFDSRLKILEKNLERLKVTNV 320
Query: 387 IRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
RT D + D+ D+VL+DAPCSGLG L+K
Sbjct: 321 -RTHAIDALEYEDDRLF--DRVLVDAPCSGLGTLTK 353
>gi|428221462|ref|YP_007105632.1| ribosomal RNA small subunit methyltransferase RsmB [Synechococcus
sp. PCC 7502]
gi|427994802|gb|AFY73497.1| ribosomal RNA small subunit methyltransferase RsmB [Synechococcus
sp. PCC 7502]
Length = 441
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 115/318 (36%), Positives = 164/318 (51%), Gaps = 15/318 (4%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
D+ D LVT++V G R +R LD LI K + P L IL IG Y+IV LD
Sbjct: 35 DISKSDRSLVTELVYGITRRQRTLDALIAEFT--GKPTAKQPPDLRLILHIGIYQIVFLD 92
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P A V+ V LAK G LVN +LRK+ ++ ++L L
Sbjct: 93 QIPNSAAVNTTVDLAKSVKLGGLSGLVNAVLRKICREQEQHTL---------FNNIHDLG 143
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
T++S P W++ W + G+EE +L W N P LR N K +T A+L+ ++
Sbjct: 144 TLHSFPDWLIELWIEQFGREETDQLCQWFNQSPHIDLRTNILK-ITTAELITLFEATEIK 202
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
+ + +R+ TG N+ EGL VQD SA L ++DPQP ++I+D CAAP
Sbjct: 203 VQSLPLIPNALRLNTGSGNIPSLVGFTEGLWTVQDASAQLTGLILDPQPNETIIDACAAP 262
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404
GGKT ++A + QGL+YA D RL+ L + + S+++ D R FAD +
Sbjct: 263 GGKTTHIAELMGNQGLIYACDRTASRLQKLQQNCDRLGL-SIVQIRVGDSREFADFQN-Q 320
Query: 405 CDKVLLDAPCSGLGVLSK 422
D+VLLD PCSGLG L +
Sbjct: 321 ADRVLLDVPCSGLGTLHR 338
>gi|407474135|ref|YP_006788535.1| ribosomal RNA small subunit methyltransferase B [Clostridium
acidurici 9a]
gi|407050643|gb|AFS78688.1| ribosomal RNA small subunit methyltransferase B [Clostridium
acidurici 9a]
Length = 446
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 109/358 (30%), Positives = 198/358 (55%), Gaps = 31/358 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME-----PLLLQILRIGFY 159
K ++D D L+ ++V G + + Y+D++I K FS++ P+++ ILR+G Y
Sbjct: 33 KGINDLDSSLIRELVYGVLENKIYIDYVI-------KNFSTVRLKKIAPVVMNILRLGIY 85
Query: 160 EIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRA 218
+++ +D +P A V+E+V+L+K G+ VNG+LR + KDN LP ++
Sbjct: 86 QLIFMDRIPDSAAVNESVKLSKKYSHRGSQGFVNGLLRNISRNKDNIKLP-----NKNKE 140
Query: 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL 278
+ + L+ YSHP WM+ RW K G E L + NNS P ++R N+ K + R LV L
Sbjct: 141 KVKYLSVKYSHPEWMIERWIKEYGFEFTESLCIANNSTPKLNIRVNTLK-IDRDTLVNIL 199
Query: 279 NLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 338
N + + + + + I V+ + N+ + K+GL +QDES+ LV ++DP+ G ++
Sbjct: 200 NQKNIDCKKTRYSTDGIIVENPI-NITELDEFKKGLFQIQDESSMLVSQIMDPKEGSLVI 258
Query: 339 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398
D C+APGGKT ++A ++ +G + A DI + +++++ E ++ +N +I+ +
Sbjct: 259 DICSAPGGKTTHIAQKMNNKGKIIARDIYEHKIKLVKENSERLGIN-IIQYEQFNALDLD 317
Query: 399 DNSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
++ K D L+DAPCSGLG++ + +++ K S ++ + E +Y +L
Sbjct: 318 ESLIGKADYCLVDAPCSGLGLIRRK----------PDIKWNKESSDIEGISELQYNIL 365
>gi|334128608|ref|ZP_08502491.1| RNA methyltransferase Sun [Centipeda periodontii DSM 2778]
gi|333386699|gb|EGK57909.1| RNA methyltransferase Sun [Centipeda periodontii DSM 2778]
Length = 448
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 111/322 (34%), Positives = 168/322 (52%), Gaps = 14/322 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
R L +RD R +T++V G ++ LD+ I D +P + ++LR+GFY+I
Sbjct: 38 LREIKLTERDRRFLTELVYGVVKAGESLDYRIGKYVAD---IRKAQPAIRELLRLGFYQI 94
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
++D +PP A D V LAK R GA + VNG+LR + + + P G D A
Sbjct: 95 FEMDRVPPSAACDTAVELAKKHGRRGADSFVNGVLRAALREPERAAYPT----GRD---A 147
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
+LA HPVWMV RW + G E +L NN+ S+R N+ + R L+ Q
Sbjct: 148 SSLALRTGHPVWMVERWMRAYGYERTEELCHCNNTSAPLSMRVNTLR-TNRPALMEQFTA 206
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
SL+ E + V + + L+ GL VQDES+ LV V+ P+PG +++D
Sbjct: 207 AGAQVRASLYAPEGV-VLDAHGALDELTPLRMGLAQVQDESSMLVAHVLAPEPGMTVIDA 265
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
CAAPGGKT ++A + +G + A DI + ++R + A+ + S++ D R
Sbjct: 266 CAAPGGKTTHIAQRMENRGRILAFDIYEEKIRRIERNAQRLGI-SIMEAQMCDARAIGAA 324
Query: 401 STVKCDKVLLDAPCSGLGVLSK 422
+ D+VL+DAPCSGLGVL +
Sbjct: 325 YAGQADRVLVDAPCSGLGVLRR 346
>gi|282895327|ref|ZP_06303529.1| Fmu, rRNA SAM-dependent methyltransferase [Raphidiopsis brookii D9]
gi|281199633|gb|EFA74493.1| Fmu, rRNA SAM-dependent methyltransferase [Raphidiopsis brookii D9]
Length = 465
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 124/335 (37%), Positives = 180/335 (53%), Gaps = 26/335 (7%)
Query: 96 VERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQ-IL 154
++RTL + L D D RL+T++V G++R +R LD +I + D+K S +P L+ IL
Sbjct: 46 IDRTL--QKFKLSDHDRRLMTELVYGSVRRQRSLDAIIDQIA-DKK--SQQQPRDLRCIL 100
Query: 155 RIGFYEI-VKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLE 213
+G Y++ + +P A V+ V+LAK PG VNG LR+ + L + S PL E
Sbjct: 101 HLGLYQLRYQQKIPVSAAVNTTVQLAKENGFPGLTGFVNGFLRQYIRLLEKTSDPLILPE 160
Query: 214 GNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD 273
L +YS P W++ W LGQEE KL W N P+ LR N + RA
Sbjct: 161 N----LVERLGILYSFPNWVIEVWLSQLGQEETEKLCQWMNQTPTIDLRVN----ILRAS 212
Query: 274 LVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLK------EGLCAVQDESAGLVVA 327
L M ++ K + + +D + GL+ V AG ++ EG +QD +A LV
Sbjct: 213 LEMVESVFK---KAGILVDRIPHLPQGLRLVNPAGPIQNLPGFTEGWWCIQDAAAQLVGH 269
Query: 328 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVI 387
++DP+PG+ I+D CAAPGGKT ++A + G +YA D RLR L+E A+ ++ S I
Sbjct: 270 LLDPKPGEVIIDVCAAPGGKTTHIAELMGDNGKIYACDRTPSRLRKLSENAQRLRLQS-I 328
Query: 388 RTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
D R F V D+VLLDAPCSGLG + +
Sbjct: 329 EIFPGDSRNFTQFHHV-ADRVLLDAPCSGLGTMHR 362
>gi|297583987|ref|YP_003699767.1| sun protein [Bacillus selenitireducens MLS10]
gi|297142444|gb|ADH99201.1| sun protein [Bacillus selenitireducens MLS10]
Length = 457
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 107/320 (33%), Positives = 185/320 (57%), Gaps = 15/320 (4%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K + + D+ L+T+IV GT++ +R LD+ + +K + +E +L +LR+ Y++ L
Sbjct: 39 KKIKEVDVALLTEIVYGTLQHQRRLDYYVSAFS--KKELNKLENWVLILLRLSVYQMHFL 96
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
D +P +A+++E VR+A G +VNGILR + +P LE + + R L
Sbjct: 97 DRVPDHAILNEAVRIASKRGHKGIAGMVNGILRSV------QREGVPDLEEIEDPKER-L 149
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
A SHP W+++RW + G E A ++ N S P S R N R VTR +L+ + +
Sbjct: 150 AIETSHPDWLIQRWISHYGFETAHRIAHGNLSYPVSSARVN-RMKVTREELMHEWTEEGL 208
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
S +L+E +RV G+ + + +EG C++QDE + +V ++DP+PG ++D CAA
Sbjct: 209 QITASPYLEEAVRVDKGV--ISRTAAFREGRCSIQDEGSMMVTGLLDPKPGMRVLDSCAA 266
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-ST 402
PGGKT ++A ++ +G +YA+DI+K ++++++ A+ + SV+ + D R +
Sbjct: 267 PGGKTSHIAERMNDEGELYAMDIHKHKIKLIDAQAERLGL-SVVHGLKGDARLAGEQLEE 325
Query: 403 VKCDKVLLDAPCSGLGVLSK 422
D +L+DAPCSGLGV+ +
Sbjct: 326 ESFDCILVDAPCSGLGVIQR 345
>gi|125973090|ref|YP_001037000.1| sun protein [Clostridium thermocellum ATCC 27405]
gi|256004593|ref|ZP_05429571.1| sun protein [Clostridium thermocellum DSM 2360]
gi|281417285|ref|ZP_06248305.1| sun protein [Clostridium thermocellum JW20]
gi|385779009|ref|YP_005688174.1| sun protein [Clostridium thermocellum DSM 1313]
gi|419721504|ref|ZP_14248667.1| sun protein [Clostridium thermocellum AD2]
gi|419725128|ref|ZP_14252181.1| sun protein [Clostridium thermocellum YS]
gi|125713315|gb|ABN51807.1| sun protein [Clostridium thermocellum ATCC 27405]
gi|255991465|gb|EEU01569.1| sun protein [Clostridium thermocellum DSM 2360]
gi|281408687|gb|EFB38945.1| sun protein [Clostridium thermocellum JW20]
gi|316940689|gb|ADU74723.1| sun protein [Clostridium thermocellum DSM 1313]
gi|380771449|gb|EIC05316.1| sun protein [Clostridium thermocellum YS]
gi|380782444|gb|EIC12079.1| sun protein [Clostridium thermocellum AD2]
Length = 455
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 110/326 (33%), Positives = 179/326 (54%), Gaps = 25/326 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME-----PLLLQILRIGFY 159
++ + D +TDIV GT++W+ +D+LI + FSS++ P + ILR+G Y
Sbjct: 39 QEFESIDRAFITDIVYGTLKWQYTIDYLI-------EKFSSVKIKKISPWIFNILRMGIY 91
Query: 160 EIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRA 218
+++ D +P +A +E+V+LA + VN +LR + K+N LP P ND A
Sbjct: 92 QLIYTDKIPFFAACNESVKLAAKYGHAASSKYVNAVLRNIARNKEN--LPYPD-RNNDTA 148
Query: 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL 278
L+ YSHPVWMV+ W G+E L+ NN F++R N K +++ +LV L
Sbjct: 149 HY--LSVKYSHPVWMVKDWLDCFGEEFTEGLLKANNEVAPFTVRVNDLK-ISKKELVDIL 205
Query: 279 NLLKVPHELSLHLDE--FIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 336
E +LDE IR + +Q + +G VQDES+ LV V+DP+PG++
Sbjct: 206 TKDGFEVENGKYLDEALIIRNPSAVQ---KMDAFAKGYFQVQDESSMLVAKVLDPKPGET 262
Query: 337 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396
I+D C+APGGK+ ++A + +G V + DI++ +++++ E AK +I+T D
Sbjct: 263 ILDVCSAPGGKSTHIAQIMKNRGTVISRDIHEHKIKLI-EQAKERLGLEIIKTEVFDAAV 321
Query: 397 FADNSTVKCDKVLLDAPCSGLGVLSK 422
K D+VL+DAPC+G G++ +
Sbjct: 322 LDGKLIEKIDRVLVDAPCTGFGIIRR 347
>gi|320530184|ref|ZP_08031254.1| ribosomal RNA small subunit methyltransferase B [Selenomonas
artemidis F0399]
gi|320137617|gb|EFW29529.1| ribosomal RNA small subunit methyltransferase B [Selenomonas
artemidis F0399]
Length = 451
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 117/369 (31%), Positives = 185/369 (50%), Gaps = 31/369 (8%)
Query: 56 EVSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLV 115
++ P R ++ LM + GA+A+ V R L DRD R +
Sbjct: 10 KIDPVRELAMQVLMEVHRDGAYAN----------------VALVRAMRAAQLTDRDRRFL 53
Query: 116 TDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDE 174
T++V GT++ LD +I D K + ++P + +ILR+G Y+I +D +P A +
Sbjct: 54 TELVYGTVKAGDTLDDMIAKYLRDGK--ARIKPQIREILRLGIYQIFFMDKVPASAACNT 111
Query: 175 NVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMV 234
V LAK + GA + VN +LR V + ++P + AR LA HP WM
Sbjct: 112 AVELAKKHGKRGADSFVNAVLRAAVREPERAAIPAGR-------NARLLALREQHPFWMA 164
Query: 235 RRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEF 294
RW + G E A +L NN +LR N+ + + R L+ +L S + +
Sbjct: 165 NRWVRLYGYERAEELCRCNNGSAPLALRVNTLR-IDREGLLKKLAAAGAQARPSATVPDG 223
Query: 295 IRVKT-GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMAS 353
I V + G+ + + L+EGLC VQDES+ LV V+ PG +++D CAAPGGKT ++A
Sbjct: 224 IVVTSHGMLDALAP--LREGLCQVQDESSMLVAHVLGAAPGMTVIDACAAPGGKTTHIAQ 281
Query: 354 CLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 413
+ +G +YA D+ +G++ + A+ ++ +I D R + D+VL+DAP
Sbjct: 282 RMENRGKIYAFDVYEGKIARIENNARRLGID-IIEPRLLDAREIGAHYAGTADRVLIDAP 340
Query: 414 CSGLGVLSK 422
CSG GVL +
Sbjct: 341 CSGFGVLRR 349
>gi|357059538|ref|ZP_09120380.1| ribosomal RNA small subunit methyltransferase B [Selenomonas
infelix ATCC 43532]
gi|355371615|gb|EHG18959.1| ribosomal RNA small subunit methyltransferase B [Selenomonas
infelix ATCC 43532]
Length = 448
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 120/341 (35%), Positives = 175/341 (51%), Gaps = 18/341 (5%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
R L +RD R +T++V G + LD++I D +P + ++LR+GFY+I
Sbjct: 38 LREVQLPERDRRFLTELVYGVTKAGASLDYMIGCYVAD---IRKAQPAIRELLRLGFYQI 94
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+D +PP A + V LAK R GA VNG+LR + + + P EG D A
Sbjct: 95 FCMDRVPPSAACNTAVELAKKHGRRGADAFVNGVLRAALREPERAAFP----EGRD---A 147
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
ALA HP WMV RW + G E +L NN+ S+R N+ + R L+ QL
Sbjct: 148 YALALRTWHPKWMVERWMRTYGYERTEELCRCNNTSAPLSVRVNTLR-TNRDALMEQLTA 206
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
S + + I V + + L+EGL VQDES+ LV ++ +PG +++D
Sbjct: 207 AGAQVRASAWVPDGI-VLAAHGALDELAPLREGLAQVQDESSMLVAHILGAEPGMTVIDA 265
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
CAAPGGKT ++A + +G + A DI + ++R + AK + S+I T D R
Sbjct: 266 CAAPGGKTTHIAQRMENRGRILAFDIYEEKMRRIERNAKRLGI-SMIETQMRDAREIGAA 324
Query: 401 STVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKT 441
+ D+VL+DAPCSGLGVL + D R KS+R KT
Sbjct: 325 YAEQADRVLVDAPCSGLGVLRRK----PDARWKKSVRDAKT 361
>gi|255657701|ref|ZP_05403110.1| ribosomal RNA small subunit methyltransferase B [Mitsuokella
multacida DSM 20544]
gi|260849889|gb|EEX69896.1| ribosomal RNA small subunit methyltransferase B [Mitsuokella
multacida DSM 20544]
Length = 452
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 121/332 (36%), Positives = 168/332 (50%), Gaps = 29/332 (8%)
Query: 101 GFRTKDLDDRDLRLVTDIV------GGTIRW--RRYLDHLICLLCHDEKTFSSMEPLLLQ 152
R DL ++D R VT++V GGT+ W RRY+ + ++P + +
Sbjct: 29 ALRQLDLGEQDRRFVTELVYGAVKAGGTLDWILRRYVS----------RPVRKIQPFVRE 78
Query: 153 ILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPK 211
ILR+G Y+I LD +P A + V LAK G VN +LR V + + P K
Sbjct: 79 ILRLGLYQIFYLDKVPASAACNTAVDLAKGMGVKGLSGFVNAVLRTAVREPEKAAFPSGK 138
Query: 212 LEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR 271
+ LA HP W+VR W + G E A KL ++N P S+RAN+ + R
Sbjct: 139 GHATEN-----LALRSQHPEWLVRHWVRTFGFEAAEKLCAFDNEQPVLSVRANTLR-TDR 192
Query: 272 ADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQA-GLLKEGLCAVQDESAGLVVAVVD 330
L+ +L E S E I V+ + A L+EG C VQDES+ LV VV
Sbjct: 193 EALLAELAAAGAEAEPSQWAPEGILVRH--HGALDALAPLQEGRCQVQDESSMLVAHVVG 250
Query: 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTI 390
PQPG+ I+DCCAAPGGKT +MA+ + +G + A DI +L+ + E A + S I T
Sbjct: 251 PQPGEFIIDCCAAPGGKTTHMAALMHDEGRILAGDIYSHKLQRIEENAARLGIQS-IETE 309
Query: 391 HADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
D R + D+VL+DAPCSGLGVL +
Sbjct: 310 EIDAREIGEQYEAMADRVLVDAPCSGLGVLRR 341
>gi|253575778|ref|ZP_04853113.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp.
oral taxon 786 str. D14]
gi|251844821|gb|EES72834.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp.
oral taxon 786 str. D14]
Length = 506
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 126/381 (33%), Positives = 198/381 (51%), Gaps = 31/381 (8%)
Query: 45 SPSRRTQNLNLEVSPHRAVSAVRLMRIQFGGAFADLL-NKKGKGSGDNEMGYVERTLGFR 103
+PS + N + R+V+ L ++ GA+++LL N + SG
Sbjct: 40 TPSSCGRGRNQAAASARSVALQVLTAVEQEGAYSNLLLNGALQKSG-------------- 85
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
L D L T++V GTI+ +D+ + K + + P + +LR+ FY++
Sbjct: 86 ---LTGPDAGLATELVYGTIQRLNTIDYFLEQFV--TKGLAKLAPWVRNLLRLSFYQLQY 140
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
LD +PP+A V+E V LAK G +VNG+LR ++ K+ LP EG D Q A
Sbjct: 141 LDRIPPHAAVNEAVNLAKRKGHQGISGMVNGVLRNVLRRKEELRLP----EGLDPVQRIA 196
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
L +SHP WMV W + G+ A + NN PS S+R N R +R +++ +
Sbjct: 197 LE--HSHPEWMVALWIQQYGESAAEAICRANNEPPSVSVRVN-RTKASRDEVLRLMEEQG 253
Query: 283 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
+ S + I V +G N+ +EGL +VQDES+ LV +DPQPG +++DCCA
Sbjct: 254 LRASASPISPDGIVVHSG-GNMALTSWYREGLISVQDESSMLVAEALDPQPGMNVLDCCA 312
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S 401
APGGKT ++A + G+G V A DI+ + +++ + AK +++V T+ D A+
Sbjct: 313 APGGKTCHIAEIMEGRGRVLANDIHPHKAKLIEDHAKRLGLDNV-DTLSGDALQLAERLK 371
Query: 402 TVKCDKVLLDAPCSGLGVLSK 422
D++LLD PCSGLGV+ +
Sbjct: 372 AASFDRILLDVPCSGLGVIRR 392
>gi|118581643|ref|YP_902893.1| sun protein [Pelobacter propionicus DSM 2379]
gi|118504353|gb|ABL00836.1| sun protein [Pelobacter propionicus DSM 2379]
Length = 452
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 132/380 (34%), Positives = 204/380 (53%), Gaps = 39/380 (10%)
Query: 58 SPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTD 117
+P ++ +V L+RIQ G +AD L + SG L D L +
Sbjct: 10 NPRQSACSV-LLRIQREGCYADQLMDRELESGG----------------LTGPDRGLFAE 52
Query: 118 IVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENV 176
+V G +R + LDH++ L + S +EP L +LR+G Y++V LD +P A V+E+V
Sbjct: 53 LVFGALRRQGTLDHILSSLL--TQPLSRLEPQALILLRVGLYQLVYLDRIPESAAVNESV 110
Query: 177 RLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRR 236
LAK L P A LVN +LR + D+ P P A ++A +SHP+W+VR+
Sbjct: 111 NLAKKTL-PRASGLVNAVLRNYLRRGDDIPFPDPLA-----MPAESIAARHSHPLWLVRQ 164
Query: 237 WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN---LLKVPHELSLHLDE 293
W LG EEA L ++ +LRAN+ ++R DL+++ + + P S H
Sbjct: 165 WIDQLGVEEAEALAEASSRQAPLALRANT-LAISRDDLLVKFSTNGIQATPCRFSPH--- 220
Query: 294 FIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMAS 353
I V+ G + EGL AVQDE++ + ++DP+PG+ I+D CAAPGGK ++A
Sbjct: 221 GILVE-GRHQITSLPGFHEGLFAVQDEASQMAGLLLDPRPGERILDACAAPGGKATHLAQ 279
Query: 354 CLSGQGLVYAIDINKGRLRILNETAKLHQVN-SVIRTIHADLRTFADNSTVKCDKVLLDA 412
++ +G + A+D++ +L ++ E+A H++ S+IRT ADL A D+VLLDA
Sbjct: 280 LMNDRGELLAMDVSGVKLPLIQESA--HRLGISIIRTRRADLLNSAAFPVDSFDRVLLDA 337
Query: 413 PCSGLGVLSKTCVGIGDWRI 432
PCSGLGV+ + WR+
Sbjct: 338 PCSGLGVIRRNPE--AKWRL 355
>gi|374997153|ref|YP_004972652.1| ribosomal RNA small subunit methyltransferase RsmB
[Desulfosporosinus orientis DSM 765]
gi|357215519|gb|AET70137.1| ribosomal RNA small subunit methyltransferase RsmB
[Desulfosporosinus orientis DSM 765]
Length = 452
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 127/364 (34%), Positives = 194/364 (53%), Gaps = 32/364 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ L R++ GA+++LL + +TL R KD RD + VT +V
Sbjct: 7 RGMAVQILTRVEVEGAYSNLL--------------LHKTLA-RLKD--SRDRQFVTLLVN 49
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GT++ R LD+ L H K+ S++ + ILRIG ++++ +D +PP A V+E+V LA
Sbjct: 50 GTLKHRLTLDY--ALRRHLSKSMSALPHEVRAILRIGAFQLLFVDKVPPAAAVNESVELA 107
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
K + LVN +LRK++ S P K R R L+ YSHP W+V+RW K
Sbjct: 108 KSFTK--YTGLVNVVLRKVMEKGWAISWPDAK-----REAVRYLSVRYSHPEWLVQRWLK 160
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKT 299
G EE L NN +R N+ K ++R DL +L + EL + E +R++
Sbjct: 161 RWGSEETEALCRINNEPAPIWIRTNTLK-ISRPDLAERLKEEGITVELGARVPESLRIQ- 218
Query: 300 GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQG 359
+ Q ++GL VQDES+ LV V PQPGQS++D C+APGGK+ ++A + +G
Sbjct: 219 DFGALDQLDSFRKGLFTVQDESSQLVAHVAAPQPGQSVLDACSAPGGKSSHLAQIMENRG 278
Query: 360 LVYAIDINKGRLRILNETAKLHQVN-SVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLG 418
+ A DI++ +L ++N+ A H++ ++I D R D VL D PCSGLG
Sbjct: 279 EILAFDIHEHKLELINQLA--HRLGITIIDAQLGDARNLPGIRLESQDCVLADVPCSGLG 336
Query: 419 VLSK 422
VL +
Sbjct: 337 VLRR 340
>gi|345859751|ref|ZP_08812085.1| transcription antitermination factor NusB [Desulfosporosinus sp.
OT]
gi|344327208|gb|EGW38652.1| transcription antitermination factor NusB [Desulfosporosinus sp.
OT]
Length = 451
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 123/363 (33%), Positives = 194/363 (53%), Gaps = 30/363 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ L R++ GA+A+LL +K G K D RD + VT +V
Sbjct: 7 RGMAVHMLTRVEVEGAYANLLLQKNVG-----------------KLTDSRDRQFVTLLVN 49
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAV-VDENVRLA 179
G ++ R LD++ L + K S++ + ILRIG ++++ +D P AV V+E+V LA
Sbjct: 50 GALKHRLTLDYV--LRKYLSKPMSALPHEVRAILRIGAFQLLYVDKVPDAVAVNESVELA 107
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
K L P LVN +LRK++ + S P K R R L+ YSHP WM++RW K
Sbjct: 108 K--LFPKYTGLVNVVLRKVMNQGWDFSWPDEK-----RETVRYLSVRYSHPEWMIQRWLK 160
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKT 299
G EE L NN +R N+ K ++R DL+ +L + E+ + E +R++
Sbjct: 161 RWGLEETEALCRANNESAQTWIRTNTLK-ISREDLMDRLTQEGITVEVGTRIPESLRIQN 219
Query: 300 GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQG 359
++ + EGL VQDES+ LV VV P+PGQ+++D C+APGGKT ++A + +G
Sbjct: 220 -FGSLERVESFCEGLFTVQDESSQLVAHVVAPKPGQNVLDACSAPGGKTTHLAQMMGNEG 278
Query: 360 LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGV 419
+ A D++ +L +++ A+ + ++I+ D R +VL+DAPCSGLGV
Sbjct: 279 EILAFDVHAHKLEFIDQLAQRLGI-TIIQPQLGDARDLPGIKLGSQQRVLVDAPCSGLGV 337
Query: 420 LSK 422
L +
Sbjct: 338 LRR 340
>gi|303232029|ref|ZP_07318732.1| ribosomal RNA small subunit methyltransferase B [Veillonella
atypica ACS-049-V-Sch6]
gi|429759370|ref|ZP_19291869.1| ribosomal RNA small subunit methyltransferase B [Veillonella
atypica KON]
gi|302513135|gb|EFL55174.1| ribosomal RNA small subunit methyltransferase B [Veillonella
atypica ACS-049-V-Sch6]
gi|429179646|gb|EKY20885.1| ribosomal RNA small subunit methyltransferase B [Veillonella
atypica KON]
Length = 452
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 109/380 (28%), Positives = 200/380 (52%), Gaps = 45/380 (11%)
Query: 56 EVSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLV 115
E++ + +RL+ ++ A +D+ N+KG + Y+ + +L D D R
Sbjct: 3 EIAKNGQKQNIRLLAVK---ALSDI-NRKGAYANIVLQDYISKY------NLSDLDRRFF 52
Query: 116 TDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDE 174
T++V G +R R YLD +I ++ + ++++ILR+G Y+I+ +D +P A V+E
Sbjct: 53 TELVYGVVRRRNYLDAIIVHFA--KRPIKKLSSMVVEILRLGVYQIIYMDKVPESAAVNE 110
Query: 175 NVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMV 234
+V+LAK R G VN ILR ++ ++ +S+ + L ND A++ IY+ P+W++
Sbjct: 111 SVKLAKKLTR-GLSGFVNAILRSVI--REQDSIGIEDLAAND---IEAISFIYNIPLWLI 164
Query: 235 RRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSL----- 289
W G+++ L W N P + R N+ L+ +P L++
Sbjct: 165 NLWISEFGRDKTEDLCAWFNEQPKLTARINTI-------------LIDIPQCLTMLNEQG 211
Query: 290 -------HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
+ ++ I + + ++ ++ +G D+++ LV +V+PQPG+ I+DCCA
Sbjct: 212 WAVTQDSNYEDIIYINSHRGSLEKSEAFIKGYITFMDKASMLVARLVNPQPGERILDCCA 271
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402
APGGK++YMA+ ++ G + + DI++ ++ ++N A S++ T D D+
Sbjct: 272 APGGKSMYMATLMNNVGSLMSCDIHEHKIELMNSNADRLGA-SIVHTKVQDATKLPDSWN 330
Query: 403 VKCDKVLLDAPCSGLGVLSK 422
D+VL+DAPCSGLG+L K
Sbjct: 331 SYFDRVLVDAPCSGLGILQK 350
>gi|401679779|ref|ZP_10811703.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
ACP1]
gi|400218906|gb|EJO49777.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
ACP1]
Length = 452
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 109/380 (28%), Positives = 199/380 (52%), Gaps = 45/380 (11%)
Query: 56 EVSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLV 115
E++ + +RL+ ++ A +D+ N+KG + Y+ + +L D D R
Sbjct: 3 EIAKNGQKQNIRLLAVK---ALSDI-NRKGAYANIVLQDYISKY------NLSDLDRRFF 52
Query: 116 TDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDE 174
T++V G +R R YLD +I ++ + ++++ILR+G Y+I+ +D +P A V+E
Sbjct: 53 TELVYGVVRRRNYLDAIIVHFA--KRPIKKLSSMVVEILRLGVYQIIYMDKVPESAAVNE 110
Query: 175 NVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMV 234
+V+LAK R G VN ILR ++ ++ +S+ + L ND A++ IY+ P+W++
Sbjct: 111 SVKLAKKLTR-GLSGFVNAILRSVI--REQDSIGIEDLAAND---IEAISFIYNIPLWLI 164
Query: 235 RRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSL----- 289
W G+++ L W N P + R N+ L+ +P L++
Sbjct: 165 NLWISEFGRDKTEDLCAWFNEQPKLTARINTI-------------LIDIPQCLTMLNEQG 211
Query: 290 -------HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
+ ++ I + + ++ ++ +G D+++ LV +V+PQPG+ I+DCCA
Sbjct: 212 WAVTQDSNYEDIIYINSHRGSLEKSEAFIKGYITFMDKASMLVARLVNPQPGERILDCCA 271
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402
APGGK++YMA+ + G + + DI++ ++ ++N A S++ T D D+
Sbjct: 272 APGGKSMYMATLMDNVGSLMSCDIHEHKIELMNSNADRLGA-SIVHTKVQDATKLPDSWN 330
Query: 403 VKCDKVLLDAPCSGLGVLSK 422
D+VL+DAPCSGLG+L K
Sbjct: 331 SYFDRVLVDAPCSGLGILQK 350
>gi|313894854|ref|ZP_07828414.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
oral taxon 137 str. F0430]
gi|312976535|gb|EFR41990.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
oral taxon 137 str. F0430]
Length = 451
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 109/323 (33%), Positives = 168/323 (52%), Gaps = 13/323 (4%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYE 160
R L DRD R +T++V GT++ LD+++ D K + ++P + ++LR+G Y+
Sbjct: 39 AMRAAKLPDRDRRFLTELVYGTVKAGDTLDYILAKYLRDGK--ARIKPQIRELLRLGIYQ 96
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
I +D +P A + V LAK + GA + VN +LR V + ++P +
Sbjct: 97 IFFMDKVPASAACNTAVELAKKHGKRGADSFVNAVLRTAVREPERAAIPAGR-------S 149
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
AR LA HP WMV RW G + A +L NN SLR N+ + + R L+ +L
Sbjct: 150 ARLLALRAQHPFWMVNRWVSLYGYDRAEELCRCNNERAPLSLRVNTLR-IDREGLLEKLA 208
Query: 280 LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 339
S + + I V T + L+EGLC VQDES+ LV V+ PG +++D
Sbjct: 209 AAGAQARPSATVPDGI-VVTSHGTLDALAPLREGLCQVQDESSMLVAHVLGAAPGMTVID 267
Query: 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 399
CAAPGGKT ++A + +G +YA D+ +G++ + A+ ++ +I T D R
Sbjct: 268 ACAAPGGKTTHIAQRMENRGKIYAFDVYEGKIARIENNARRLGID-IIETWMLDAREIGA 326
Query: 400 NSTVKCDKVLLDAPCSGLGVLSK 422
D+VL+DAPCSG GVL +
Sbjct: 327 RCAGTADRVLIDAPCSGFGVLRR 349
>gi|374582947|ref|ZP_09656041.1| ribosomal RNA small subunit methyltransferase RsmB
[Desulfosporosinus youngiae DSM 17734]
gi|374419029|gb|EHQ91464.1| ribosomal RNA small subunit methyltransferase RsmB
[Desulfosporosinus youngiae DSM 17734]
Length = 452
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 124/363 (34%), Positives = 191/363 (52%), Gaps = 30/363 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ L R++ GA+A+LL +K + D RD VT +V
Sbjct: 7 RKMAVNMLTRVEAEGAYANLLLQKNS-----------------LRLTDSRDRHFVTLLVN 49
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAV-VDENVRLA 179
GT++ R LD+ L H K SS+ + ILRIG ++I+ LD P AV V+E+V LA
Sbjct: 50 GTLKHRLTLDY--ALRRHLSKPMSSLPHEVRAILRIGAFQILFLDKVPSAVAVNESVELA 107
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
K P LVN +LRK+ ++ + P L+ R R L+ YSHP W+++RW
Sbjct: 108 KEF--PKFTGLVNVVLRKV--MERGWDIDWPDLK---REPVRYLSVRYSHPEWLIQRWLN 160
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKT 299
G EE L NN +R N+ K ++R DL +L + +L + E +++ +
Sbjct: 161 RWGIEETEALCKVNNEPSPTWIRTNTLK-ISREDLTERLREEGITVQLGSRVPESLQI-S 218
Query: 300 GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQG 359
+ Q +EGL VQDES+ LV VV+PQPGQS++D C+APGGK+ ++A + +G
Sbjct: 219 NFGALDQLDSFREGLFTVQDESSQLVAHVVNPQPGQSVLDACSAPGGKSTHLAQMMKNEG 278
Query: 360 LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGV 419
+ A DI+ +L ++ + A+ + ++I T D R D VL+DAPCSGLG+
Sbjct: 279 KILAFDIHAHKLELVEQLAQKLGI-TIIETQVGDARDLPGIRLESQDCVLVDAPCSGLGI 337
Query: 420 LSK 422
+ +
Sbjct: 338 IRR 340
>gi|402303061|ref|ZP_10822159.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
FOBRC9]
gi|400379291|gb|EJP32135.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
FOBRC9]
Length = 455
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 109/322 (33%), Positives = 167/322 (51%), Gaps = 13/322 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
R L DRD R +T++V GT++ LD +I D K + ++P + +ILR+G Y+I
Sbjct: 44 MRAAQLTDRDRRFLTELVYGTVKAGDTLDDMIAKYLRDGK--ARIKPQIREILRLGIYQI 101
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+D +P A + V LAK + GA + VN +LR V + ++P + A
Sbjct: 102 FFMDKVPASAACNTAVELAKKHGKRGADSFVNAVLRAAVREPERAAIPAGR-------NA 154
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R LA HP WM RW + G E A +L NN +LR N+ + + R L+ +L
Sbjct: 155 RLLALREQHPFWMANRWVRLYGYERAEELCRCNNGSAPLALRVNTLR-IDREGLLEKLAA 213
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
S + + I V T + L+EGLC VQDES+ LV V+ PG +++D
Sbjct: 214 AGAQARPSATVPDGI-VVTSHGTLDALAPLREGLCQVQDESSMLVAHVLGAAPGMTVIDA 272
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
CAAPGGKT ++A + +G +YA D+ +G++ + A+ ++ +I D R +
Sbjct: 273 CAAPGGKTTHIAQRMENRGKIYAFDVYEGKIARIENNARRLGID-IIEPRLLDAREIGAH 331
Query: 401 STVKCDKVLLDAPCSGLGVLSK 422
D+VL+DAPCSG GVL +
Sbjct: 332 YAGTADRVLIDAPCSGFGVLRR 353
>gi|334134798|ref|ZP_08508300.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp.
HGF7]
gi|333607642|gb|EGL18954.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp.
HGF7]
Length = 489
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 113/323 (34%), Positives = 174/323 (53%), Gaps = 13/323 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
R DL D L T+IV GTI+ R +D+ + L K ++P + +LR+ Y++
Sbjct: 70 LREADLPRPDAALATEIVYGTIQRRNTIDYYLAKLV--TKGLGKLQPWVRSLLRMSLYQL 127
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ L+ +P +AVV E V +AK G +VNG+LR + + +LP +G Q
Sbjct: 128 LYLERVPDHAVVSEAVNIAKRRGHQGISGMVNGVLRSAIRQRAELTLP----QGMTDTQR 183
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
+L +SHP W+VRRWT G E ++ NN P S+RAN+R+ A L+ QL L
Sbjct: 184 ISLE--HSHPEWLVRRWTLQYGAEACERICKANNEPPHISIRANTRRQHPDA-LLEQLRL 240
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
E S I V +G + G +G ++QDES+ LV + P+ G +++DC
Sbjct: 241 GGFDAEPSALSPAGIVVSSGGNMALTPGF-GQGDYSIQDESSMLVAEALRPEAGMTVLDC 299
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA-D 399
CAAPGGKT ++A + G V+A D++ + R+++E A+ + SV T+ D R A +
Sbjct: 300 CAAPGGKTAHIAEKMDDTGTVWACDLHPHKKRLIDEQAQRLGLKSV-HTLVKDARELAGE 358
Query: 400 NSTVKCDKVLLDAPCSGLGVLSK 422
D++LLDAPCSG GV+ +
Sbjct: 359 FEPASFDRILLDAPCSGFGVIRR 381
>gi|443478406|ref|ZP_21068164.1| sun protein [Pseudanabaena biceps PCC 7429]
gi|443016313|gb|ELS31003.1| sun protein [Pseudanabaena biceps PCC 7429]
Length = 450
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 112/315 (35%), Positives = 160/315 (50%), Gaps = 14/315 (4%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MP 167
+ D RL+T++V G R ++ L + L +K + + P LL IL+IG Y++ LD +
Sbjct: 44 ESDRRLITELVYGCTRRQKTLQAV--LQNFSQKPIAKLPPDLLIILQIGVYQLCFLDRIK 101
Query: 168 PYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIY 227
A+V V L K G NG++R ++ K+ +G+ A A+ Y
Sbjct: 102 ASAIVHTTVELVKENKLAGLSGFANGVMRSILRAKE---------KGDILADISDPASFY 152
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHEL 287
S+P W++ W K GQE + W N P LR N R ++ + E
Sbjct: 153 SYPEWLIDLWQKEFGQESIANICNWFNQTPHLDLRVNLLHA-KRDQVLAAFAEAGIVAEP 211
Query: 288 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 347
HL + IRV G V Q KEG +VQD SA LV ++DPQP + +VD CAAPGGK
Sbjct: 212 IPHLPDGIRVGQGAGEVSQLPKFKEGWWSVQDASAQLVTYLLDPQPHEIVVDACAAPGGK 271
Query: 348 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 407
T +++ L G VYA+D RL+ + + A + +V +TI D R FA KCD+
Sbjct: 272 TTHISDRLKNTGKVYALDRLASRLKKVEQNAARLGITNV-QTIELDAREFAGIPEGKCDR 330
Query: 408 VLLDAPCSGLGVLSK 422
VLLD PCSGLG L +
Sbjct: 331 VLLDVPCSGLGTLHR 345
>gi|188585963|ref|YP_001917508.1| sun protein [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179350650|gb|ACB84920.1| sun protein [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 462
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 111/325 (34%), Positives = 172/325 (52%), Gaps = 17/325 (5%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
DL +D L + I GT++W+ +D+ + L H + S + L +LR+G Y+I+ LD
Sbjct: 36 DLLAQDKALASRITYGTLQWQGLIDYYLKTLSH--RPLSKLSNKALFLLRMGAYQILFLD 93
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP A V+E V++A G N VNGILR L+ KD LP D+ L+
Sbjct: 94 RVPPSASVNETVKVAHRRTHKGIANFVNGILRNLIRKKDQILLP-----SRDQDLLNYLS 148
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
YSHP WMV+ W G ++ I +M NNS P ++R N + + +L +L + +
Sbjct: 149 VKYSHPYWMVKLWYDKYGLDKTISIMDQNNSTPEEAIRVN-KLLTSLENLKNELEMTGIQ 207
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
LS +D+ + V L ++ L G VQD ++ +V + DPQ G +I+D C+AP
Sbjct: 208 SRLSSKIDDALLVDN-LGDLNNNTLFNCGYFQVQDINSMVVSHLCDPQQGDNIIDLCSAP 266
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV-------IRTIHADLRTF 397
G KT ++ + GQG + A+DI++ RL+++ E + QVN+V + I D +
Sbjct: 267 GSKTTHLVQLIDGQGSILAVDIHEHRLKLVKEACRRLQVNNVNVKQADGTKLISRDQQEN 326
Query: 398 ADNSTVKCDKVLLDAPCSGLGVLSK 422
+ D L+DAPCSGLG L K
Sbjct: 327 NKQLKGQFDLCLIDAPCSGLGTLRK 351
>gi|410667764|ref|YP_006920135.1| ribosomal RNA small subunit methyltransferase B [Thermacetogenium
phaeum DSM 12270]
gi|409105511|gb|AFV11636.1| ribosomal RNA small subunit methyltransferase B [Thermacetogenium
phaeum DSM 12270]
Length = 462
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 106/313 (33%), Positives = 166/313 (53%), Gaps = 12/313 (3%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
DL L+T++V GT+R R +D +I C S M + I+R+G Y+++ LD +PP+
Sbjct: 47 DLALLTELVYGTLRMRGTIDWVID--CFSSTPVSKMSHAVRNIVRLGVYQLLFLDRIPPW 104
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A +E V AK G VNG+LR + ++ S P P ++ ++ YSH
Sbjct: 105 AACNEAVEQAKRWRLAGLAGFVNGLLRSIARKREEISHPDPDVDPLSH-----ISVKYSH 159
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSL 289
P W+V RW G+EE I L NN +R N+ K +T +L QL V S+
Sbjct: 160 PAWLVERWLNRYGKEETIALCRANNKPAPLVIRCNTLK-ITPQELQQQLERENVIARFSM 218
Query: 290 HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 349
+ E + T L ++ + L +EG AVQDES+ + V++P PG ++D C+ PGGKT
Sbjct: 219 LVPEGL--VTNLSSLAELRLFQEGYFAVQDESSMIASLVLNPAPGSFVIDACSGPGGKTT 276
Query: 350 YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 409
+MA + +G + A+D++ RL ++ + K V S++ D+R K D +L
Sbjct: 277 HMAQIMQNRGRILALDVHSHRLELVAKACKRMGV-SIVEPKLMDVRELPFQLQEKADYIL 335
Query: 410 LDAPCSGLGVLSK 422
+D PCSGLGV+ +
Sbjct: 336 VDVPCSGLGVIRR 348
>gi|427418132|ref|ZP_18908315.1| ribosomal RNA small subunit methyltransferase RsmB [Leptolyngbya
sp. PCC 7375]
gi|425760845|gb|EKV01698.1| ribosomal RNA small subunit methyltransferase RsmB [Leptolyngbya
sp. PCC 7375]
Length = 446
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 124/351 (35%), Positives = 184/351 (52%), Gaps = 30/351 (8%)
Query: 75 GAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLIC 134
GAFAD+ +ER +G L D RL T+++ GT+R +R LD LI
Sbjct: 18 GAFADVA--------------LERNIGKFA--LTPADRRLATELIYGTVRRQRTLDALID 61
Query: 135 LLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNG 193
L S + L +IL +GFY++ LD +P +AVVD V+LAK +VNG
Sbjct: 62 QLGKRRADQQSAD--LRRILHVGFYQLRYLDHVPNHAVVDTTVQLAKQQRLGKLSGVVNG 119
Query: 194 ILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWN 253
+LR+ + L++ PL +L ++ A AL ++S+P W+++ W + + E+ +L W
Sbjct: 120 MLRQYIRLQEAKGDPL-QLPTDEIA---ALGVLHSYPDWIIQAWQQLVPVEDVARLCEWF 175
Query: 254 NSDPSFSLRANS-RKGVTRADLVMQLNLLKV-PHELSLHLDEFIRVKTGLQNVIQAGLLK 311
N P LR N R V + + + L V PH + + IR+ + NV Q +
Sbjct: 176 NQAPKIDLRVNRLRTTVEQVTTALTDHGLTVAPHA---GIPDAIRIVGPMGNVRQLPGYE 232
Query: 312 EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRL 371
G VQD SA LV +V+PQPG++++D C APGGKT ++A + QG V D RL
Sbjct: 233 AGWWMVQDSSAQLVSYLVNPQPGETVIDACGAPGGKTTHLAEMMGDQGRVLGCDRTSSRL 292
Query: 372 RILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
+ + AK Q+NS I T+ D R + + D+VLLD PCSGLG L +
Sbjct: 293 NKIRQNAKRLQLNS-IETVMGDSREHPEFKGI-ADRVLLDVPCSGLGTLHR 341
>gi|297530652|ref|YP_003671927.1| sun protein [Geobacillus sp. C56-T3]
gi|297253904|gb|ADI27350.1| sun protein [Geobacillus sp. C56-T3]
Length = 444
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 110/320 (34%), Positives = 172/320 (53%), Gaps = 20/320 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD RD L+T+IV GT++ R LD+ + + +EP + +LR+ Y++V LD
Sbjct: 34 LDGRDAALLTEIVYGTVQRRDTLDYYLAPFLRKAR---RLEPWVRVLLRLTLYQMVYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A V E V +AK G +LVNG+LR + LP +E D A R LA
Sbjct: 91 VPDRAAVFEAVEIAKRRGHRGIASLVNGVLRAI------GREGLPSIEAVDDAGKR-LAL 143
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL--VMQLNLLKV 283
SHP W+VRRW + G EEA ++ N P + R N + L + + +
Sbjct: 144 ATSHPEWLVRRWIQQYGYEEAARMCETNLRPPQSTARVNRLRATVEEALERLRAEGMQAI 203
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
P ++ E IR + G N+ + G +QDES+ LV +DP PG+ ++DCCAA
Sbjct: 204 PGHVA---PEAIRAEKG--NLAHTETFRAGWLTIQDESSMLVARALDPAPGERVLDCCAA 258
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403
PGGKT ++A + G+G V A+DI++ ++ ++ + AK +++V T+ D R +
Sbjct: 259 PGGKTTHIAERMDGRGEVVAVDIHEHKVMLIEQQAKRLGLDNVA-TLALDSRRLGERFAP 317
Query: 404 KC-DKVLLDAPCSGLGVLSK 422
+ D+VL+DAPC+G GV+ +
Sbjct: 318 ESFDRVLVDAPCTGFGVIRR 337
>gi|448237330|ref|YP_007401388.1| ribosomal RNA small subunit methyltransferase B [Geobacillus sp.
GHH01]
gi|445206172|gb|AGE21637.1| ribosomal RNA small subunit methyltransferase B [Geobacillus sp.
GHH01]
Length = 444
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 110/320 (34%), Positives = 172/320 (53%), Gaps = 20/320 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD RD L+T+IV GT++ R LD+ + + +EP + +LR+ Y++V LD
Sbjct: 34 LDGRDAALLTEIVYGTVQRRDTLDYYLAPFLRKAR---RLEPWVRVLLRLTLYQMVYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A V E V +AK G +LVNG+LR + LP +E D A R LA
Sbjct: 91 VPDRAAVFEAVEIAKRRGHRGIASLVNGVLRAI------GREGLPSIEAVDDAGKR-LAL 143
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL--VMQLNLLKV 283
SHP W+VRRW + G EEA ++ N P + R N + L + + +
Sbjct: 144 ATSHPEWLVRRWIQQYGYEEAARMCETNLRPPQSTARVNRLRATVEEALERLRAEGMQAI 203
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
P ++ E IR + G N+ + G +QDES+ LV +DP PG+ ++DCCAA
Sbjct: 204 PGHVA---PEAIRAEKG--NLAHTETFRAGWLTIQDESSMLVARALDPAPGERVLDCCAA 258
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403
PGGKT ++A + G+G V A+DI++ ++ ++ + AK +++V T+ D R +
Sbjct: 259 PGGKTTHIAERMGGRGEVVAVDIHEHKVMLIEQQAKRLGLDNVA-TLALDSRRLGERFAP 317
Query: 404 KC-DKVLLDAPCSGLGVLSK 422
+ D+VL+DAPC+G GV+ +
Sbjct: 318 ESFDRVLVDAPCTGFGVIRR 337
>gi|56419708|ref|YP_147026.1| RNA-binding Sun protein [Geobacillus kaustophilus HTA426]
gi|375008141|ref|YP_004981774.1| hypothetical protein [Geobacillus thermoleovorans CCB_US3_UF5]
gi|56379550|dbj|BAD75458.1| RNA-binding Sun protein [Geobacillus kaustophilus HTA426]
gi|359286990|gb|AEV18674.1| hypothetical protein GTCCBUS3UF5_13610 [Geobacillus thermoleovorans
CCB_US3_UF5]
Length = 444
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 110/320 (34%), Positives = 172/320 (53%), Gaps = 20/320 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD RD L+T+IV GT++ R LD+ + + +EP + +LR+ Y++V LD
Sbjct: 34 LDGRDAALLTEIVYGTVQRRDTLDYYLAPFLRKAR---RLEPWVRVLLRLTLYQMVYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A V E V +AK G +LVNG+LR + LP +E D A R LA
Sbjct: 91 VPDRAAVFEAVEIAKRRGHRGIASLVNGVLRAI------GREGLPSIEAVDDAGKR-LAL 143
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL--VMQLNLLKV 283
SHP W+VRRW + G EEA ++ N P + R N + L + + +
Sbjct: 144 ATSHPEWLVRRWIQQYGYEEAARMCETNLRPPQSTARVNRLRATVEEALERLRAEGMQAI 203
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
P ++ E IR + G N+ + G +QDES+ LV +DP PG+ ++DCCAA
Sbjct: 204 PGHVA---PEAIRAEKG--NLAHTETFRAGWLTIQDESSMLVARALDPAPGERVLDCCAA 258
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403
PGGKT ++A + G+G V A+DI++ ++ ++ + AK +++V T+ D R +
Sbjct: 259 PGGKTTHIAERMDGRGEVVAVDIHERKVMMIEQQAKRLGLDNVA-TLALDSRRLGERFAP 317
Query: 404 KC-DKVLLDAPCSGLGVLSK 422
+ D+VL+DAPC+G GV+ +
Sbjct: 318 ESFDRVLVDAPCTGFGVIRR 337
>gi|282901368|ref|ZP_06309293.1| Fmu, rRNA SAM-dependent methyltransferase [Cylindrospermopsis
raciborskii CS-505]
gi|281193647|gb|EFA68619.1| Fmu, rRNA SAM-dependent methyltransferase [Cylindrospermopsis
raciborskii CS-505]
Length = 446
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 122/335 (36%), Positives = 178/335 (53%), Gaps = 26/335 (7%)
Query: 96 VERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQ-IL 154
++RTL L D D RL+T++V G++R +R LD +I + D+K S +P L+ IL
Sbjct: 27 IDRTL--HKFKLSDHDRRLMTELVYGSVRRQRSLDAIIDQIA-DKK--SPQQPRDLRCIL 81
Query: 155 RIGFYEI-VKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLE 213
+G Y++ + +P A V+ V+LAK PG VNG LR+ + L + S PL E
Sbjct: 82 HLGLYQLRYQQKIPVSAAVNTTVQLAKENGFPGLTGFVNGFLRQYIRLLEKTSDPLILPE 141
Query: 214 GNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD 273
L +YS P W++ W LGQEE KL W N P+ LR N + RA
Sbjct: 142 N----LVERLGILYSFPNWVIEVWLSQLGQEETEKLCQWMNQTPTIDLRVN----ILRAS 193
Query: 274 LVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLK------EGLCAVQDESAGLVVA 327
+ M ++ K + + L + GL+ V AG ++ EG +QD +A LV
Sbjct: 194 VEMVESVFK---KSGILLHRIPHLPQGLRLVGPAGPIQNLPGFTEGWWCIQDAAAQLVGH 250
Query: 328 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVI 387
++DP+PG+ I+D CAAPGGKT ++A + G +YA D RLR L+E A+ ++ S I
Sbjct: 251 LLDPRPGEVIIDVCAAPGGKTTHIAELMGDNGKIYACDRTPSRLRKLSENAQRLRLQS-I 309
Query: 388 RTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
D R F + D+VLLDAPCSGLG + +
Sbjct: 310 EIFPGDSRNFTKFHHL-ADRVLLDAPCSGLGTMHR 343
>gi|429737562|ref|ZP_19271420.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
oral taxon 138 str. F0429]
gi|429152368|gb|EKX95198.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
oral taxon 138 str. F0429]
Length = 448
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 113/330 (34%), Positives = 169/330 (51%), Gaps = 30/330 (9%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
R L +RD R +T++V G + LD++I D ++P + ++LR+GFY+I
Sbjct: 38 LRDTVLAERDRRFLTELVYGVTKAGESLDYMIGQYVAD---IRKVQPAIRELLRLGFYQI 94
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+D +PP A + V LAK R GA + VNG+LR + + LP G D A
Sbjct: 95 FVMDRVPPSAACNTAVELAKKHGRRGADSFVNGVLRAALRAPERAVLPT----GRD---A 147
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
RALA HP WMV RW + G E L + NN+ S+R N+ + R+ L+ Q +
Sbjct: 148 RALALRSWHPAWMVERWMRAYGYERTEALCLCNNTSAPLSVRVNTLR-TNRSALMEQFAV 206
Query: 281 LK--------VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQ 332
VP + LH L ++ L+ GL VQDES+ LV V+ +
Sbjct: 207 AGAEARASRWVPDGIVLH------AHGALDDLPP---LRAGLAQVQDESSMLVAHVLGAE 257
Query: 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 392
PG +++D CAAPGGKT ++A + +G + A DI + ++R + + A+ + S+I
Sbjct: 258 PGMTVIDTCAAPGGKTTHIAQRMENRGRILAFDIYEEKIRRIEQNARRLGI-SIIEAEMR 316
Query: 393 DLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
D R D+VL+DAPCSGLGVL +
Sbjct: 317 DAREIGAAYEAMADRVLVDAPCSGLGVLRR 346
>gi|409993041|ref|ZP_11276199.1| 16S rRNA methyltransferase B [Arthrospira platensis str. Paraca]
gi|291566504|dbj|BAI88776.1| ribosomal RNA small subunit methyltransferase B [Arthrospira
platensis NIES-39]
gi|409936102|gb|EKN77608.1| 16S rRNA methyltransferase B [Arthrospira platensis str. Paraca]
Length = 447
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 131/368 (35%), Positives = 187/368 (50%), Gaps = 33/368 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIV 119
R ++ V L IQ GAFAD+ L++K R DL D D RL T++V
Sbjct: 6 RQLAFVTLRDIQRRGAFADIVLDEK-----------------LRQADLKDADRRLGTELV 48
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI-VKLDMPPYAVVDENVRL 178
G R RR LD +I L +K P L IL +G Y++ ++PP A V+ V L
Sbjct: 49 YGCTRRRRTLDAIIDRLA--KKPAHQQPPDLRIILHLGLYQLCFSSNIPPSAAVNTTVDL 106
Query: 179 AKVALRPGAGNLVNGILRK-LVLLKDNNSLP-LPKLEGNDRAQARALATIYSHPVWMVRR 236
KV G G VNG+LR+ L L++ NSL + +L N ++ L ++S P WM++
Sbjct: 107 TKVNNLSGLGGFVNGLLRQYLRLVEAGNSLESILQLPENPVSR---LGILHSFPDWMIKF 163
Query: 237 WTKYLGQEEAIKLMVWNNSDPSFSLRAN--SRKGVTRADLVMQLNLLKVPHELSLHLDEF 294
W + LG+ + +L W N PS LR N S T Q ++ P L +
Sbjct: 164 WLEELGESQTQQLCDWFNQSPSLDLRINPLSTTLETVETAFQQQEIIGSPLP---KLPQG 220
Query: 295 IRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASC 354
R+ +G+ + +G VQD SA LV +VDPQPG+ I+D CAAPGGKT ++A
Sbjct: 221 WRLSSGVGAIRNLPGYDQGWWTVQDASAQLVGYIVDPQPGEIIIDACAAPGGKTTHIAEL 280
Query: 355 LSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPC 414
+ G V AID + GRL+ L + ++ S+ + D R F + + D+VLLDAPC
Sbjct: 281 MGDNGKVIAIDRSPGRLKPLKQNINRLKLRSIQVEV-GDSRHFPQYNNM-ADRVLLDAPC 338
Query: 415 SGLGVLSK 422
SG G L +
Sbjct: 339 SGGGTLHR 346
>gi|421074228|ref|ZP_15535268.1| sun protein [Pelosinus fermentans JBW45]
gi|392527734|gb|EIW50820.1| sun protein [Pelosinus fermentans JBW45]
Length = 443
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 11/317 (3%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+ D+D R +T++V GTI+ LD +I ++ + + P++L ILR+G Y+I L
Sbjct: 34 ISDQDRRFITELVYGTIKAGETLDWIIGHYV--TRSLNKVAPVILNILRMGMYQIFFLSK 91
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A ++ V L K G VN +LR + + P E N + LA
Sbjct: 92 VPVSAACNQAVELTKKYGHTGTVKFVNAVLRNAG--RGPEKVIYPDREKN---IVKFLAL 146
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
Y HP WMV RW K LG + A +L NN P+ SLR N+ K TR +L+ LNL V
Sbjct: 147 KYFHPQWMVARWVKRLGADAAEELCQINNVTPALSLRTNTLKN-TREELLDILNLEGVSA 205
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
E S+ E I V + L++GL +QDES+ LV V+ P+P + I+D C APG
Sbjct: 206 EASVWTPEGI-VCHSYPALSTLKSLRDGLFQIQDESSMLVAHVLAPKPDEFIIDACGAPG 264
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405
GK+ ++A+ + +G V + DI + +L + E A+ + ++I D T DN +
Sbjct: 265 GKSTHIATLMENKGRVLSTDIYEHKLALTQENAQRLGL-TIIDVQSLDATTLGDNYARQA 323
Query: 406 DKVLLDAPCSGLGVLSK 422
DKVL+DAPCSGLGVL +
Sbjct: 324 DKVLVDAPCSGLGVLRR 340
>gi|261419371|ref|YP_003253053.1| sun protein [Geobacillus sp. Y412MC61]
gi|319766186|ref|YP_004131687.1| sun protein [Geobacillus sp. Y412MC52]
gi|261375828|gb|ACX78571.1| sun protein [Geobacillus sp. Y412MC61]
gi|317111052|gb|ADU93544.1| sun protein [Geobacillus sp. Y412MC52]
Length = 444
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 112/321 (34%), Positives = 174/321 (54%), Gaps = 22/321 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD RD L+T+IV GT++ R LD+ + + +EP + +LR+ Y++V LD
Sbjct: 34 LDGRDAALLTEIVYGTVQRRDTLDYYLAPFLRKAR---RLEPWVRVLLRLTLYQMVYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR-ALA 224
+P A V E V +AK G +LVNG+LR + LP +E D A R ALA
Sbjct: 91 VPDRAAVFEAVEIAKRRGHRGIASLVNGVLRAI------GREGLPSIEAVDDAGKRLALA 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL--VMQLNLLK 282
T SHP W+VRRW + G EEA ++ N P + R N + L + +
Sbjct: 145 T--SHPEWLVRRWIQQYGYEEAARMCETNLRPPQSTARVNRLRATVEEALERLRAEGMQV 202
Query: 283 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
+P ++ E IR + G N+ + G +QDES+ LV +DP PG+ ++DCCA
Sbjct: 203 IPGHVA---PEAIRAEKG--NLAHTETFRAGWLTIQDESSMLVARALDPAPGERVLDCCA 257
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402
APGGKT ++A + G+G V A+DI++ ++ ++ + AK +++V T+ D R +
Sbjct: 258 APGGKTTHIAERMDGRGEVVAVDIHEHKVMLIEQQAKRLGLDNVA-TLSLDSRRLGERFA 316
Query: 403 VKC-DKVLLDAPCSGLGVLSK 422
+ D+VL+DAPC+G GV+ +
Sbjct: 317 PESFDRVLVDAPCTGFGVIRR 337
>gi|303228540|ref|ZP_07315368.1| ribosomal RNA small subunit methyltransferase B [Veillonella
atypica ACS-134-V-Col7a]
gi|302516787|gb|EFL58701.1| ribosomal RNA small subunit methyltransferase B [Veillonella
atypica ACS-134-V-Col7a]
Length = 452
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 108/380 (28%), Positives = 199/380 (52%), Gaps = 45/380 (11%)
Query: 56 EVSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLV 115
E++ + +RL+ ++ A +D+ N+KG + Y+ + +L D D R
Sbjct: 3 EIAKNGQKQNIRLLAVK---ALSDI-NRKGAYANIVLQDYILKY------NLSDLDRRFF 52
Query: 116 TDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDE 174
T++V G +R R YLD +I + + + ++++ILR+G Y+I+ +D +P A V+E
Sbjct: 53 TELVYGVVRRRNYLDVIIVHFAN--RPIKKLSSMVVEILRLGVYQIIYMDKVPESAAVNE 110
Query: 175 NVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMV 234
+V+LAK R G VN ILR ++ ++ +S+ + L ND A++ IY+ P+W++
Sbjct: 111 SVKLAKKLTR-GLSGFVNAILRSVI--REQDSIGIEDLAAND---IEAISFIYNIPLWLI 164
Query: 235 RRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSL----- 289
W G+++ L W N P + R N+ L+ +P L++
Sbjct: 165 NLWISEFGRDKTEDLCAWFNEQPKLTARINTI-------------LIDIPQCLTMLNEQG 211
Query: 290 -------HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
+ ++ I + + ++ ++ +G D+++ LV +V+PQPG+ I+DCCA
Sbjct: 212 WAVTQDSNYEDIIYINSHRGSLEKSEAFIKGYITFMDKASMLVARLVNPQPGERILDCCA 271
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402
APGGK++Y+A+ + G + + DI++ ++ ++N A S++ T D D+
Sbjct: 272 APGGKSMYIAALMDNVGSLMSCDIHEHKIELMNSNADRLGA-SIVHTKVQDATKLPDSWN 330
Query: 403 VKCDKVLLDAPCSGLGVLSK 422
D+VL+DAPCSGLG+L K
Sbjct: 331 SYFDRVLVDAPCSGLGILQK 350
>gi|225181330|ref|ZP_03734774.1| sun protein [Dethiobacter alkaliphilus AHT 1]
gi|225167911|gb|EEG76718.1| sun protein [Dethiobacter alkaliphilus AHT 1]
Length = 451
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 113/318 (35%), Positives = 168/318 (52%), Gaps = 13/318 (4%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD RD RL +I G I ++ LD LI + + ++ + QILRIGFY++ LD
Sbjct: 40 LDPRDKRLAAEITYGVITYKLTLDWLIEKVSG--RPIKKLDKPIHQILRIGFYQLFYLDR 97
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+PP A V V L K + G VNG++R + KD+ LP P + A L+
Sbjct: 98 VPPAAAVHATVELVKKGKKRGLAPFVNGVMRGALRKKDH--LPWPD---KKKDSANYLSV 152
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
YSHP+W+VRRW G EEA KL+ NN S+R N+ + R L+ +L V
Sbjct: 153 RYSHPLWLVRRWLNRYGPEEAEKLVAANNQAAPLSIRVNTLR-TDRDTLLSELTAAGVEA 211
Query: 286 ELSLHLDE-FIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
S + E + ++G + + +EG VQ ESA L V+DPQ G +++D C+AP
Sbjct: 212 VPSTVVPEGALLTRSG--RLTELAPYREGRFQVQGESAMLTSRVLDPQAGDAVLDGCSAP 269
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404
GGKT ++A ++ G + A+DI+ RL ++ + V+ ++RT D R A +
Sbjct: 270 GGKTTHLAQLMNNSGDILALDIHPHRLELVKANCRRMGVD-IVRTQCLDAREIAKENPDS 328
Query: 405 CDKVLLDAPCSGLGVLSK 422
D +LLD PCSG GV+ +
Sbjct: 329 FDCILLDVPCSGFGVIRR 346
>gi|218439986|ref|YP_002378315.1| sun protein [Cyanothece sp. PCC 7424]
gi|218172714|gb|ACK71447.1| sun protein [Cyanothece sp. PCC 7424]
Length = 452
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 116/323 (35%), Positives = 168/323 (52%), Gaps = 10/323 (3%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYE 160
G + DL + D LVT++V G +R +R LD +I L K + P L IL IG Y+
Sbjct: 33 GIKRADLGNLDRGLVTELVYGIVRRQRTLDEIISQL--GTKKANQQPPDLRLILHIGLYQ 90
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
+ LD +PP A V+ +V LAK +VNGILR+ +K+ PL K +
Sbjct: 91 LRYLDQIPPSAAVNTSVELAKKNKLGKLSGVVNGILRQYDRIKEQGKDPL-KFPSDP--- 146
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
L ++S P W+++ W GQE+ +L W N +R N K T + +
Sbjct: 147 VNHLGVLHSFPNWIIQLWLDEFGQEQTEQLCEWFNQPAMIDIRVNLLK-TTVEKVASIFS 205
Query: 280 LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 339
+ V + HL + +R+ G +++ Q +EG VQD SA LV ++DPQP + I+D
Sbjct: 206 DVGVKVKPIPHLPQSLRLIGGTRSIQQLPGFEEGWWTVQDSSAQLVTHLLDPQPDEIIID 265
Query: 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 399
CAAPGGKT ++A + +G ++A D RLR + + A+ Q+NS IR D R
Sbjct: 266 ACAAPGGKTTHIAQLMGDRGTIWACDRVPSRLRKVQQNAERLQLNS-IRICEGDSRHLTQ 324
Query: 400 NSTVKCDKVLLDAPCSGLGVLSK 422
D+VLLDAPCSGLG L K
Sbjct: 325 FRET-ADRVLLDAPCSGLGTLHK 346
>gi|392426904|ref|YP_006467898.1| ribosomal RNA small subunit methyltransferase RsmB
[Desulfosporosinus acidiphilus SJ4]
gi|391356867|gb|AFM42566.1| ribosomal RNA small subunit methyltransferase RsmB
[Desulfosporosinus acidiphilus SJ4]
Length = 452
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 123/364 (33%), Positives = 193/364 (53%), Gaps = 32/364 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++A L R++ GA+A+LL ++RTL K D R+ + +T +V
Sbjct: 7 RGMAAQILTRVEVEGAYANLL--------------LQRTLA---KLSDPRERQFITLLVN 49
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAV-VDENVRLA 179
G ++ + LD+ L H K S++ + ILRIG ++++ +D P AV V+E+V LA
Sbjct: 50 GVLKNKLTLDY--ALRLHLSKPMSALPHEIRAILRIGAFQLLFVDRVPMAVAVNESVELA 107
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
K P LVN +LRK++ N S P K R R L+ YSHP WM++RW K
Sbjct: 108 KSF--PKFTGLVNVVLRKVLANGWNISWPDAK-----RETVRYLSVRYSHPEWMIQRWLK 160
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKT 299
G++E L + NN +R N+ K ++R DL +L V E + E +R++
Sbjct: 161 RWGKDETEALCLINNEPAQTWIRTNTLK-ISRQDLADRLMGTGVLVEFGERVPESLRIQN 219
Query: 300 -GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 358
G ++A K G VQDES+ L+ VV P+ GQ ++D C+APGGKT ++A + +
Sbjct: 220 FGAIEGLEA--FKAGYFTVQDESSQLIAHVVSPEAGQRVLDACSAPGGKTTHLAQMMKDE 277
Query: 359 GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLG 418
G++ A D++ +L ++ + A+ + + I T D R +VL+DAPCSGLG
Sbjct: 278 GVIVAFDVHTHKLELIEQLAQRLGI-TCIETRLGDARDLTGIEPCSQQRVLVDAPCSGLG 336
Query: 419 VLSK 422
VL +
Sbjct: 337 VLRR 340
>gi|385808959|ref|YP_005845355.1| ribosomal RNA small subunit methyltransferase B [Ignavibacterium
album JCM 16511]
gi|383801007|gb|AFH48087.1| Ribosomal RNA small subunit methyltransferase B [Ignavibacterium
album JCM 16511]
Length = 482
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 117/369 (31%), Positives = 184/369 (49%), Gaps = 32/369 (8%)
Query: 94 GYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLL 151
Y+E+ L R +L +D L+ +IV G RW LD ++ + FS P L
Sbjct: 60 AYLEKLLDHEMRNSELSGQDKALLYEIVHGVTRWMGRLDWILTGFYKGQ--FSKAIPNLR 117
Query: 152 QILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLP 210
LR+ Y+I+ LD +P +A V+E V K +L N ILR ++ K+ P P
Sbjct: 118 NGLRVALYQILFLDKIPDHAAVNEAVEFVKKLQGQKPADLTNAILRNIIRSKNAIRYPDP 177
Query: 211 KLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVT 270
+ LA YSHP WMV+R+ + G+EE KL++ NN P +LR N+ K
Sbjct: 178 -----EEDLIGYLAAYYSHPSWMVKRYVERFGREETEKLLLANNEKPYLTLRVNAIK-TN 231
Query: 271 RADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVD 330
+ L+ + + + + EF +++ L N+ +G +QDES GL ++D
Sbjct: 232 PEEFGKLLDSVHLKYRRGKYNPEFFQLQN-LTNITAWEYFAKGYFNIQDESTGLACKLLD 290
Query: 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRIL---NETAKLHQVNSVI 387
+PG ++D CAAPGGKT ++A+ + +G + AID + RL++L NE L + +
Sbjct: 291 VKPGMRVLDMCAAPGGKTAFLAALMQDKGEIVAIDKFEARLKLLRRNNERLGL----TCV 346
Query: 388 RTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQH 447
RT+ +D + D D+VL D PCSG G LSK +++ K F ++
Sbjct: 347 RTVESDALEYEDEP---FDRVLADVPCSGTGTLSKK----------PDIKWKKDIFDIRK 393
Query: 448 LCETKYLLL 456
+ ET+ LL
Sbjct: 394 MTETQLKLL 402
>gi|315646179|ref|ZP_07899299.1| sun protein [Paenibacillus vortex V453]
gi|315278378|gb|EFU41694.1| sun protein [Paenibacillus vortex V453]
Length = 460
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 103/326 (31%), Positives = 174/326 (53%), Gaps = 19/326 (5%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ L D L T+++ GTI LD+ + + K + ++P + +LR+ Y++
Sbjct: 40 LQKASLSKSDAGLATELIYGTISRLNTLDYFLDRYVN--KGVAKLQPWVRALLRMSLYQV 97
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
V LD +P +AVV E V LAK G +VNG+LR ++ K + ++P D A
Sbjct: 98 VYLDRIPDHAVVSEAVNLAKRRGHQGISGMVNGVLRNILRQKADLTIP------EDMPAA 151
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN- 279
R ++ ++SHP W+V RW G E + NN P+ S+R N+ ++R +++ +
Sbjct: 152 RRISLLHSHPQWLVERWIAQYGTEATEAICAANNEPPAVSVRVNTTM-ISREEMLKLMGS 210
Query: 280 --LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 337
L P LS + V G N+ ++GL ++QDES+ LV + P+PG +
Sbjct: 211 HGLDATPSPLS----PYGIVVKGAGNMALTDWYRDGLISIQDESSMLVAEAIQPEPGMRV 266
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397
+DCCAAPGGK+ +M + +G + A DI+ + +++++ A ++S++ T+ D
Sbjct: 267 LDCCAAPGGKSAHMGELMKDEGSIIANDIHTHKGKLISDQASRLGLDSIM-TVTGDALDL 325
Query: 398 ADN-STVKCDKVLLDAPCSGLGVLSK 422
AD D++LLDAPCSGLGV+ +
Sbjct: 326 ADRFEPASFDRILLDAPCSGLGVIRR 351
>gi|428311848|ref|YP_007122825.1| ribosomal RNA small subunit methyltransferase RsmB [Microcoleus sp.
PCC 7113]
gi|428253460|gb|AFZ19419.1| ribosomal RNA small subunit methyltransferase RsmB [Microcoleus sp.
PCC 7113]
Length = 485
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 128/401 (31%), Positives = 196/401 (48%), Gaps = 45/401 (11%)
Query: 39 KKRAKVSPSRRTQNLNLEVSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVER 98
++R +SP Q+ + + R ++ L+ IQ G F D+ ++R
Sbjct: 8 RRRWGISP---IQSQKILMHNPRQLAFQALIDIQRRGTFTDI--------------ALDR 50
Query: 99 TLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGF 158
L R L D L T++V G++R +R LD LI L +K P L IL IG
Sbjct: 51 VL--RDTSLSSADRGLATELVYGSVRRQRTLDSLIDQL--GKKKAHQQPPELRTILHIGL 106
Query: 159 YEI-VKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL----- 212
Y++ + +P A V+ V LAK G +VNG+LR+ L +++ P +
Sbjct: 107 YQLRYQKHIPARAAVNTTVELAKENGFKGLAGVVNGLLRQYERLATASTVSNPSISPEPQ 166
Query: 213 --EGNDRAQ-----ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANS 265
+ ND Q L +S P WM++ W + LG +E +L W N P+ LR N
Sbjct: 167 NPQSNDPLQLPTEPVERLGVSHSFPDWMIQMWQEQLGLDETEQLCAWLNQTPTIDLRVNP 226
Query: 266 -RKGVTRADLVMQ---LNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDES 321
R + ++ MQ + + ++P L + +RV G N+ Q +EG VQD S
Sbjct: 227 MRVSIEEVEVAMQSTGVEVRRIPQ-----LPQALRVMGGAGNIQQLPGFREGWWTVQDSS 281
Query: 322 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH 381
A LV +++PQ G+ ++D CAAPGGKT ++A + QG ++A D RL+ L E +
Sbjct: 282 AQLVSHLLNPQAGEVVIDACAAPGGKTTHIAELMGDQGTIWACDRAASRLKKLQENTQRL 341
Query: 382 QVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
Q+ S I+ D R F+ T ++VLLDAPCSGLG L +
Sbjct: 342 QLQS-IQICTGDSRHFS-QFTDSANRVLLDAPCSGLGTLHR 380
>gi|209524134|ref|ZP_03272685.1| sun protein [Arthrospira maxima CS-328]
gi|376004062|ref|ZP_09781832.1| Ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Arthrospira sp. PCC
8005]
gi|423066085|ref|ZP_17054875.1| sun protein [Arthrospira platensis C1]
gi|209495509|gb|EDZ95813.1| sun protein [Arthrospira maxima CS-328]
gi|375327556|emb|CCE17585.1| Ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Arthrospira sp. PCC
8005]
gi|406712424|gb|EKD07610.1| sun protein [Arthrospira platensis C1]
Length = 458
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 133/368 (36%), Positives = 185/368 (50%), Gaps = 33/368 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIV 119
R ++ V L IQ GAFADL L++K R DL D D RL T++V
Sbjct: 6 RQLAFVTLRDIQRRGAFADLVLDEK-----------------LRQADLKDADRRLGTELV 48
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI-VKLDMPPYAVVDENVRL 178
G R RR LD +I L +K P L IL +G Y++ ++PP A V+ V L
Sbjct: 49 YGCTRRRRTLDAIIDRLA--KKPAHQQPPDLRIILHLGLYQLSFSTNIPPSAAVNTTVDL 106
Query: 179 AKVALRPGAGNLVNGILRK-LVLLKDNNSLP-LPKLEGNDRAQARALATIYSHPVWMVRR 236
KV G G VNG+LR+ L LL+ NSL + +L N ++ L ++S P M++
Sbjct: 107 TKVNHLSGLGGFVNGLLRQYLRLLEAGNSLESILQLPENPVSR---LGILHSFPDSMIKF 163
Query: 237 WTKYLGQEEAIKLMVWNNSDPSFSLRAN--SRKGVTRADLVMQLNLLKVPHELSLHLDEF 294
W + LG+ + +L W N PS LR N S T Q ++ P L +
Sbjct: 164 WLEELGESQTEQLCDWFNQSPSLDLRINPLSTTLETVETAFQQREIIGSPIP---KLPQG 220
Query: 295 IRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASC 354
R+ G+ + +G VQD SA LV VVDPQPG+ I+D CAAPGGKT ++A
Sbjct: 221 WRLSYGVGAIANLPGYDQGWWTVQDASAQLVGYVVDPQPGEIIIDACAAPGGKTTHIAEL 280
Query: 355 LSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPC 414
+ G + AID + GRL+ L + K ++ S+ + D R F + D+VLLDAPC
Sbjct: 281 MGDNGKIIAIDRSPGRLKPLQQNIKRLKLRSIQVEV-GDSRHFPQYNNT-ADRVLLDAPC 338
Query: 415 SGLGVLSK 422
SG G L +
Sbjct: 339 SGGGTLHR 346
>gi|261405800|ref|YP_003242041.1| sun protein [Paenibacillus sp. Y412MC10]
gi|261282263|gb|ACX64234.1| sun protein [Paenibacillus sp. Y412MC10]
Length = 442
Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 106/326 (32%), Positives = 173/326 (53%), Gaps = 19/326 (5%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ L D L T+++ GTI LD+ + + K ++P + +LRI Y+I
Sbjct: 22 LQKSSLAKSDAGLATELIYGTISRLNTLDYFLDKFVN--KGVRKLQPWVRALLRISLYQI 79
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
V LD +P +AVV E V LAK G +VNG+LR + L+ +L +P+ D A
Sbjct: 80 VYLDRIPDHAVVSEAVNLAKRRGHQGISGMVNGVLRNI--LRQKETLAIPE----DMTDA 133
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN- 279
+ ++ ++SHP W+V RW G E + NN P+ S+R N+ ++R D++ +
Sbjct: 134 QRISLLHSHPQWLVERWISQYGTEATEAICAANNEPPAVSVRVNTTM-ISRDDMLKLMGN 192
Query: 280 --LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 337
L P +S + V G N+ +EG+ ++QDES+ LV V P+PG +
Sbjct: 193 HGLDASPSSVS----PYGIVVKGAGNMALTDWYREGMISIQDESSMLVAEAVQPEPGMRV 248
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397
+DCCAAPGGK+ +M ++ +G + A DI+ + +++++ A ++S I + D
Sbjct: 249 LDCCAAPGGKSAHMGELMNDEGSIVANDIHAHKGKLISDQASRLGLDS-ISIVTGDALDL 307
Query: 398 ADN-STVKCDKVLLDAPCSGLGVLSK 422
AD D++LLDAPCSGLGV+ +
Sbjct: 308 ADRFEPASFDRILLDAPCSGLGVIRR 333
>gi|404370888|ref|ZP_10976204.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
7_2_43FAA]
gi|226912989|gb|EEH98190.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
7_2_43FAA]
Length = 439
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 116/319 (36%), Positives = 173/319 (54%), Gaps = 18/319 (5%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
D++D+D L+T+IV GT+R +R LD LI D + ++ +L ILR+ Y++ LD
Sbjct: 33 DIEDKDKGLITEIVYGTLRRKRTLDVLIGNFVKD---INLIDTTVLNILRVAIYQMYFLD 89
Query: 166 -MPPYAVVDENVRLAK-VALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
+P YA +E V AK V+L A LVNGILR + KD + +P GN + L
Sbjct: 90 KIPEYAACNEAVEEAKEVSLE--ASKLVNGILRNYI--KDEKEIVVP---GN---RIDEL 139
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
A +S WM+R + K G+E +KLM N P ++R N K ++ +L +
Sbjct: 140 AYKFSFQPWMIRLFIKQYGEERTMKLMAGLNETPKVTVRVNEFKA-EYDEVYEKLEEIGY 198
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
E E I +K G + + L KEGL VQDESA LV ++D + G ++D CAA
Sbjct: 199 NIEDGYACPEAIAIKGG-KGIEDNQLFKEGLITVQDESAMLVAPLLDLKEGDKVLDLCAA 257
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403
PGGKT ++A L+ G V A D+++ +L ++ E AK +N+++ D +
Sbjct: 258 PGGKTTHIAELLANSGEVLAFDLHENKLSLIEENAKRLGLNNIV-CKAMDATKLNSDYIS 316
Query: 404 KCDKVLLDAPCSGLGVLSK 422
DKVL+D PCSGLG++ K
Sbjct: 317 YGDKVLIDVPCSGLGIIRK 335
>gi|329926565|ref|ZP_08280978.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp.
HGF5]
gi|328939106|gb|EGG35469.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp.
HGF5]
Length = 442
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 106/326 (32%), Positives = 173/326 (53%), Gaps = 19/326 (5%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ L D L T+++ GTI LD+ + + K ++P + +LRI Y+I
Sbjct: 22 LQKSSLAKSDAGLATELIYGTISRLNTLDYFLDKFVN--KGVRKLQPWVRALLRISLYQI 79
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
V LD +P +AVV E V LAK G +VNG+LR + L+ +L +P+ D A
Sbjct: 80 VYLDRIPDHAVVSEAVNLAKRRGHQGISGMVNGVLRNI--LRQKETLAIPE----DMTDA 133
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN- 279
+ ++ ++SHP W+V RW G E A + NN P+ S+R N+ ++R D++ +
Sbjct: 134 QRISLLHSHPQWLVERWISQYGTEAAEAICAANNEPPAVSVRVNTTM-ISRDDMLKLMGS 192
Query: 280 --LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 337
L P +S + V G N+ ++G+ ++QDES+ LV V P+PG +
Sbjct: 193 HGLDASPSSVS----PYGIVVKGAGNMALTDWYRDGMISIQDESSMLVAEAVQPEPGMRV 248
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397
+DCCAAPGGK+ +M + +G + A DI+ + +++++ A ++S I + D
Sbjct: 249 LDCCAAPGGKSAHMGELMKDEGSIVANDIHAHKGKLISDQASRLGLDS-ISIVTGDALDL 307
Query: 398 ADN-STVKCDKVLLDAPCSGLGVLSK 422
AD D++LLDAPCSGLGV+ +
Sbjct: 308 ADRFEPASFDRILLDAPCSGLGVIRR 333
>gi|354582479|ref|ZP_09001381.1| sun protein [Paenibacillus lactis 154]
gi|353199878|gb|EHB65340.1| sun protein [Paenibacillus lactis 154]
Length = 454
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 111/323 (34%), Positives = 174/323 (53%), Gaps = 23/323 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D L T+++ GTI LD+ + + K ++P + +LR+ Y+I+ LD
Sbjct: 43 LSKSDAGLATELIYGTISRLNTLDYFLDKYVN--KGTRKLQPWVRALLRLSLYQIIYLDR 100
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +AVV E V LAK G +VNG+LR + L+ SL +P D A+ ++
Sbjct: 101 IPDHAVVSEAVNLAKRRGHQGISGMVNGVLRNI--LRQKESLAIPA----DLPAAKRISL 154
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN---LLK 282
+SHP W+V RW G+E A + NN P+ S+R N+ ++R +++ ++ L
Sbjct: 155 QHSHPEWLVERWISQYGRETAEAICSANNEPPAVSVRVNTTM-ISREEMLKEMEGHGLQA 213
Query: 283 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
P LS + V G N+ +EG+ ++QDES+ LV V P+PG ++DCCA
Sbjct: 214 APSSLS----PYGIVVKGAGNMALTDWYREGMISIQDESSMLVAEAVGPEPGMRVLDCCA 269
Query: 343 APGGKTLYMASCLSGQGLVYAIDI--NKGRLRILNETAKLHQVNSVIRTIHAD-LRTFAD 399
APGGK+ +M + +G + A DI +KG+L I ++ A+L IRT+ D + A
Sbjct: 270 APGGKSAHMGELMKDEGSIVANDIHSHKGKL-IADQAARLGL--DCIRTVTGDAIELPAR 326
Query: 400 NSTVKCDKVLLDAPCSGLGVLSK 422
D++LLDAPCSGLGV+ +
Sbjct: 327 FEPASFDRILLDAPCSGLGVIRR 349
>gi|401565870|ref|ZP_10806681.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
FOBRC6]
gi|400183501|gb|EJO17754.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
FOBRC6]
Length = 448
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 113/330 (34%), Positives = 168/330 (50%), Gaps = 30/330 (9%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
R L +RD R +T++V G + LD++I D +P + ++LR+GFY+I
Sbjct: 38 LRDTVLAERDRRFLTELVYGVTKAGESLDYMIGQYVAD---IRKAQPAIRELLRLGFYQI 94
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+D +PP A + V LAK R GA + VNG+LR + + +LP G D A
Sbjct: 95 FVMDRVPPSAACNTAVELAKKHGRRGADSFVNGVLRAALRAPERAALPT----GRD---A 147
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
RALA HP WMV RW + G E L + NN+ S+R N+ + + R L+ Q
Sbjct: 148 RALALRSWHPAWMVERWMRAYGYERTEALCLCNNTSAPLSVRVNTLR-IDRLALMEQFAA 206
Query: 281 LK--------VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQ 332
VP + LH L ++ L+ GL VQDES+ LV V+ +
Sbjct: 207 AGAKARASRWVPDGIVLH------AHGALDDLPP---LRAGLAQVQDESSMLVAHVLGAE 257
Query: 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 392
PG +++D CAAPGGKT ++A + +G + A DI + ++R + + A+ + S+I
Sbjct: 258 PGMTVIDSCAAPGGKTTHIAQRMENRGRILAFDIYEEKIRRIEQNARRLGI-SIIEAQMR 316
Query: 393 DLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
D R D+VL+DAPCSGLGVL +
Sbjct: 317 DAREIGAAYEGIADRVLVDAPCSGLGVLRR 346
>gi|220928955|ref|YP_002505864.1| sun protein [Clostridium cellulolyticum H10]
gi|219999283|gb|ACL75884.1| sun protein [Clostridium cellulolyticum H10]
Length = 449
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 168/313 (53%), Gaps = 12/313 (3%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D T++V GT++W +D++ L + + P + ILR+G Y+++ D +P
Sbjct: 41 DRSFATELVYGTVKWLLQIDYV--LGKYSSVKLKKLSPWIKNILRLGIYQLLHTDRIPVS 98
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A + V LAK + VN +LR + K N++P P N L+ +YSH
Sbjct: 99 AACNTGVELAKRYGHQASSRFVNAVLRNIA--KSKNNIPYPDKSDN----VNYLSILYSH 152
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSL 289
PVWMV +W + G E +L+ NN P F +R N+ K R L+ L+ + E
Sbjct: 153 PVWMVEKWIELYGTEFTEELLKSNNQVPDFIIRTNTLK-TDRVTLLDMLHKEGISAEPGR 211
Query: 290 HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 349
+++E + +K+ ++ + K G VQDES+ L ++DP+ G++++D C+APGGK
Sbjct: 212 YIEEAVILKSP-SSITNLEVFKNGYFQVQDESSMLAAKILDPKEGETVIDVCSAPGGKAT 270
Query: 350 YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 409
+MA ++ +G + A D+ + +L+++ ++ ++ + IH D + T K D+VL
Sbjct: 271 HMAQLMNNKGTIIARDVYQHKLKLIEQSCCRLGIDIIKTEIH-DACCLDETFTGKADRVL 329
Query: 410 LDAPCSGLGVLSK 422
+DAPCSGLG++ K
Sbjct: 330 IDAPCSGLGIIRK 342
>gi|404494920|ref|YP_006719026.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter
metallireducens GS-15]
gi|418067574|ref|ZP_12704913.1| sun protein [Geobacter metallireducens RCH3]
gi|78192548|gb|ABB30315.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter
metallireducens GS-15]
gi|373558572|gb|EHP84908.1| sun protein [Geobacter metallireducens RCH3]
Length = 446
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 125/369 (33%), Positives = 188/369 (50%), Gaps = 33/369 (8%)
Query: 68 LMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRR 127
L+R++ AFA+ L ++R L T DR L +T++V G +R +
Sbjct: 14 LLRVERDRAFAEQL--------------LDRELSLGTLTGPDRGL--LTELVYGVLRRQG 57
Query: 128 YLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPG 186
LD L+ +E +L ILR+G Y++ LD +P A V+E+V LAK A+ P
Sbjct: 58 TLDFLVDAFAASRS--GKLERAILVILRLGLYQLFFLDRIPTSAAVNESVNLAK-AVAPR 114
Query: 187 AGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEA 246
A VN +LR+ ++ +SLP P G D A +A +SHP W+V +W + LG EA
Sbjct: 115 AAGFVNAVLRRAD--RERDSLPWPD-RGAD--PAAYIAVRHSHPRWLVEQWIEQLGIPEA 169
Query: 247 IKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQ 306
+L V ++R N+ K TR + +L + E ++ +R+ +
Sbjct: 170 EELAVAMAEQAPLTIRVNTLK-TTREAFMEELAAAGITAEPTVWAPHGVRILSRTAVTTL 228
Query: 307 AGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDI 366
G EGL VQDES+ L +DPQPG+ I+D CAAPGGK Y+A + +G V A DI
Sbjct: 229 PGF-AEGLFTVQDESSQLAAFFLDPQPGERILDVCAAPGGKATYLAQLMENRGEVLACDI 287
Query: 367 NKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKTCVG 426
+ +LR++ E A + +IRT+ D T D++LLDAPCSG GV+ + G
Sbjct: 288 SAKKLRLVAEAAARLGIG-IIRTMAGDA-TKPGAGEPPFDRILLDAPCSGFGVIRRNPEG 345
Query: 427 IGDWRIWKS 435
+ WK+
Sbjct: 346 ----KWWKT 350
>gi|158320464|ref|YP_001512971.1| sun protein [Alkaliphilus oremlandii OhILAs]
gi|158140663|gb|ABW18975.1| sun protein [Alkaliphilus oremlandii OhILAs]
Length = 445
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 105/326 (32%), Positives = 187/326 (57%), Gaps = 14/326 (4%)
Query: 98 RTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIG 157
+ L + +L DR+L +T++V G + + Y+DH++ + + M P L +LR+G
Sbjct: 27 KELNNESYNLLDRNL--LTELVYGVLENQIYIDHVLSQFSNFQ--LDKMNPYTLNLLRLG 82
Query: 158 FYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGND 216
Y+++ LD +P +A V+E V L+K + G +NG+LR + ++ N++ +PK E N
Sbjct: 83 IYQLLFLDRVPSFAAVNETVNLSKKYCKKTTG-FINGVLRNV--QRNRNNIKMPKPEKN- 138
Query: 217 RAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM 276
+ + L+ YSHP W+V+ + K+ +L+ NN P LR N+ K ++ AD +
Sbjct: 139 --RIKYLSIRYSHPEWLVQLFLKHFDVNFVEELLKANNKKPDLYLRINTLK-ISVADCIQ 195
Query: 277 QLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 336
L E S ++E I VK G+ N+ + K+G +QD S+ LV + P+ G+
Sbjct: 196 LLEAEGYVVEQSKIVEEAIVVK-GIHNIEKTDFYKKGYIQIQDISSMLVAKALAPKEGEL 254
Query: 337 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396
++D C+APGGKT ++A ++ +G + A DI++ +L++++ TAK ++ +I+T
Sbjct: 255 VMDICSAPGGKTTHIAQLMNNKGKIIARDIHEHKLKLIDRTAKRLGIH-IIQTEKFSGDH 313
Query: 397 FADNSTVKCDKVLLDAPCSGLGVLSK 422
++ K DKVL+DAPCSGLG++ +
Sbjct: 314 LDESFIHKADKVLVDAPCSGLGIIRR 339
>gi|81299771|ref|YP_399979.1| sun protein [Synechococcus elongatus PCC 7942]
gi|81168652|gb|ABB56992.1| sun protein [Synechococcus elongatus PCC 7942]
Length = 451
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 127/360 (35%), Positives = 185/360 (51%), Gaps = 35/360 (9%)
Query: 75 GAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLI 133
GAFADL L++ + SG L D RLVT++V G +R +R LD LI
Sbjct: 23 GAFADLALDRHLQRSG-----------------LVGADRRLVTELVYGCVRRQRTLDALI 65
Query: 134 CLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVN 192
LL ++ + P+L +L++G Y++ L+ +P A V E V+LAK G VN
Sbjct: 66 DLLA--QRPAAQQPPVLRTVLQLGLYQLRYLEQIPTAAAVAETVQLAKQLGLGGLSGAVN 123
Query: 193 GILRK-LVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMV 251
ILR+ L ++ + LPLP ALA S P W+V+ W+ LG +EA L
Sbjct: 124 AILRQYLRQSEERDPLPLPS------DPIAALAIHQSFPDWLVQLWSDRLGLDEAEFLCH 177
Query: 252 WNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLK 311
W N PS LR N + R+ + L + + L + +R+ + Q
Sbjct: 178 WFNQPPSIDLRINPLR-TERSQVQAALEAVGIRSTPDPQLPQALRLIDPPGPIRQLPGFD 236
Query: 312 EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRL 371
EG VQD SA L+ +VDPQPG++++D CAAPGGK+ ++A + +G V A D + RL
Sbjct: 237 EGWWMVQDSSAQLIAHLVDPQPGETVLDVCAAPGGKSTHLAELMGDRGQVIACDSSAKRL 296
Query: 372 RILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWR 431
R + E A+ Q++S I T D R ++ D++L+DAPCSGLG L + G WR
Sbjct: 297 RKVQENAQRLQLSS-ITTRAIDGRQI---KGIQADRILVDAPCSGLGTLHRHA--DGRWR 350
>gi|295696042|ref|YP_003589280.1| sun protein [Kyrpidia tusciae DSM 2912]
gi|295411644|gb|ADG06136.1| sun protein [Kyrpidia tusciae DSM 2912]
Length = 486
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 131/402 (32%), Positives = 195/402 (48%), Gaps = 42/402 (10%)
Query: 23 SKQAASTRKPRTSISTKKRAKVSPSRRTQ-NLNLEVSPHRAVSAVRLMRIQFGGAFADLL 81
++ A R PR +S + A VSP+RR + L V RA S + L ++ L
Sbjct: 5 ARAANPVRDPRRRVSGRAGA-VSPARRGAFEVLLLVEERRAYSHIALRQV---------L 54
Query: 82 NKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEK 141
N+ G D RD L T+IV GT+RW+R+LD I
Sbjct: 55 NRLGA---------------------DRRDSALATEIVQGTLRWQRWLDEQIN--AKSRI 91
Query: 142 TFSSMEPLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL 200
+ ++ ++ LR+ Y++ KL P+AVV++ V L K +P A + VNG+LR L
Sbjct: 92 PIARLDAVVRVTLRMAVYQLYKLRHCAPHAVVNDAVELVK-GTQPRAASYVNGVLRALER 150
Query: 201 LKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFS 260
+ S P N LA SHP WMV RW +LG E I L NN P +
Sbjct: 151 EQQTPSPPRAARSRNAPGNPEELARRTSHPTWMVERWWSWLGPEATIALCESNNEPPPLT 210
Query: 261 LRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDE 320
LR N + A+++ + S + +RV +G+ +V + + G C+VQDE
Sbjct: 211 LRVNLLRSSV-AEVMESVREAGGEGRPSPVIPGVLRV-SGV-DVSRLSTFRSGACSVQDE 267
Query: 321 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKL 380
SA L + P+PG ++D CAAPGGK+ ++A + G G V A+DI+ ++ ++ TA+
Sbjct: 268 SATLAAWTLQPEPGWEVLDLCAAPGGKSAHLAEWMKGTGRVTAVDIHPHKIPLIERTARR 327
Query: 381 HQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
+ +V + AD R S D L+DAPCSGLGVL +
Sbjct: 328 LGLPNV-HPVCADGRDAP--SLGIFDAALVDAPCSGLGVLRR 366
>gi|397906023|ref|ZP_10506850.1| Ribosomal RNA small subunit methyltransferase B [Caloramator
australicus RC3]
gi|397160937|emb|CCJ34185.1| Ribosomal RNA small subunit methyltransferase B [Caloramator
australicus RC3]
Length = 446
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 103/332 (31%), Positives = 175/332 (52%), Gaps = 34/332 (10%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F+ +L D T+IV GT+RW+ +D+LI C +K + L +RIG Y+I
Sbjct: 31 FKKYNLSSLDRAFATEIVYGTLRWKLKIDYLIQKFC--KKDLKDLNVWALNCIRIGVYQI 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+D +P +A V+++V L K+ P VNGILR ++ K + N++ +
Sbjct: 89 FLMDKVPEFAAVNQSVVLCKLK-APRLSGFVNGILRNIIRNKQEFDII------NEKDKT 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
+ L+ YSHP W + + KY ++ I LM NN P ++R N+ K ++ +L ++
Sbjct: 142 KFLSIKYSHPKWFIDYFIKYFDEKFLIDLMDANNQAPELTVRVNTLKS-SKENLKAKI-- 198
Query: 281 LKVPHELSLHLDEFIRVKTG-------LQNVIQAGLLKE---GLCAVQDESAGLVVAVVD 330
+ I+VK G ++ V Q ++E GL VQD+S+ + +++
Sbjct: 199 ----------ISRGIKVKDGQLKESLIIEEVGQIEKMQEFLDGLFYVQDQSSMMASIILN 248
Query: 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTI 390
P+PG+ ++D CAAPGGK +MA + G + A D+++ ++ ++NE +K + +I+ +
Sbjct: 249 PKPGEKVLDMCAAPGGKATHMAELMENTGEIIAFDVHEHKIDLINENSKRLGI-GIIKPM 307
Query: 391 HADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
D F DK+LLDAPCSGLG++ K
Sbjct: 308 LKDATGFYKEFENNFDKILLDAPCSGLGLIRK 339
>gi|402297531|ref|ZP_10817298.1| 16S rRNA methyltransferase B [Bacillus alcalophilus ATCC 27647]
gi|401727206|gb|EJT00399.1| 16S rRNA methyltransferase B [Bacillus alcalophilus ATCC 27647]
Length = 448
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 119/367 (32%), Positives = 196/367 (53%), Gaps = 37/367 (10%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ L++I+ A+++LL + SG+ ++ RD+ L+T++V
Sbjct: 6 REVALQVLIQIEKEQAYSNLLLNQTINSGE----------------VEKRDIGLLTELVY 49
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GT++ R L L +K S+EP + +L++ Y++V L+ +P AV+ E V +A
Sbjct: 50 GTVQ--RKLTLTFFLTPFVKKGLESLEPWVKTLLQMSVYQLVYLERVPERAVIHEAVTIA 107
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
K G +LVNGILR + +P E Q + LA YS P WMVRRW
Sbjct: 108 KKRGHDGTASLVNGILRSV------QREGVPSFEKVTN-QTKRLAFEYSFPKWMVRRWLA 160
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN---LLKVPHELSLHLDEFIR 296
G+EE ++M + P SLR N K + DL+ L +L ELS + +
Sbjct: 161 TYGEEETREMMKVSLKPPVVSLRVNQLK-TNQEDLMKILKEEGVLTRKGELS---SDALI 216
Query: 297 VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS 356
V+ G N + + GL QDES+ LV + P+ G+ I+D CAAPGGK+ ++A ++
Sbjct: 217 VEEG--NAFKTNAYRSGLFTAQDESSMLVAKALGPKAGEHILDSCAAPGGKSTHIAELMN 274
Query: 357 GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAPCS 415
+G + ++D+++ +++++ E AK + S+I + AD+R F+ + + D +LLDAPCS
Sbjct: 275 NEGSLLSVDLHEHKVQLIREQAKRLDL-SMIEVVAADVRAFSQKTPAQSFDAILLDAPCS 333
Query: 416 GLGVLSK 422
GLGV+ +
Sbjct: 334 GLGVIRR 340
>gi|290968496|ref|ZP_06560035.1| ribosomal RNA small subunit methyltransferase B [Megasphaera
genomosp. type_1 str. 28L]
gi|290781492|gb|EFD94081.1| ribosomal RNA small subunit methyltransferase B [Megasphaera
genomosp. type_1 str. 28L]
Length = 442
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 112/323 (34%), Positives = 167/323 (51%), Gaps = 23/323 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L DRD R T++V GT+R+ LD I +L +++ M+ + ILR+G Y++ LD
Sbjct: 34 LSDRDRRFYTELVYGTLRYMAMLDRAIGML--SKRSLQQMDAVCAAILRLGLYQLQYLDK 91
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL---EGNDRAQARA 222
+PP A E V LA+ G VN +LR N+L P++ +
Sbjct: 92 VPPSAACYEAVALARKMGHEGMAKFVNAVLR--------NALRRPEVFVVPSRQEDEVLH 143
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
LA Y W +RR + G EE +KL + ++ P +R ++K ++R + L
Sbjct: 144 LALTYHQQNWFIRRCLQQYGFEETVKLCRFFDTIPELCVRIQTQK-ISREKAMAMLAEKG 202
Query: 283 VPHELSLHLDE--FIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ + E +I +QN+ LL G +QDE++ LV V+DPQPG ++D
Sbjct: 203 IVTRPGRYAPESLYIETNDAVQNL---ELLAAGRAMIQDEASQLVAHVLDPQPGDVVLDV 259
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHADLRTFAD 399
CAAPGGKT ++AS LVY DI + +L+++ E A KLH N IRTI D +
Sbjct: 260 CAAPGGKTTHIASLGGSDCLVYGADIYEHKLQLIRENAEKLHLTN--IRTILQDAVRIGE 317
Query: 400 NSTVKCDKVLLDAPCSGLGVLSK 422
K D+VL+DAPCSGLG+L +
Sbjct: 318 RFPAKADRVLVDAPCSGLGILRR 340
>gi|443310715|ref|ZP_21040357.1| ribosomal RNA small subunit methyltransferase RsmB [Synechocystis
sp. PCC 7509]
gi|442779240|gb|ELR89491.1| ribosomal RNA small subunit methyltransferase RsmB [Synechocystis
sp. PCC 7509]
Length = 446
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 114/332 (34%), Positives = 169/332 (50%), Gaps = 20/332 (6%)
Query: 96 VERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILR 155
+ER L DLD R LVT++V G++R R LD LI L K PLL IL
Sbjct: 25 LERVLS--KNDLDPRSRGLVTELVYGSVRQMRLLDTLIDQLA--SKKADKQPPLLRTILH 80
Query: 156 IGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG 214
+G Y++ L +PP A V+ V LAK G VNG+LR+ + + + PL +L
Sbjct: 81 LGLYQLRYLSHIPPSAAVNTTVELAKKNGLSGLSGFVNGVLRQYLRIAETGIDPL-QLPE 139
Query: 215 NDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR-KGVTRAD 273
N L ++S+P W++ W + G +L W N P LR N + + +
Sbjct: 140 NP---TERLGILHSYPDWIIDVWLEQFGFTATEQLCQWLNQPPKLDLRVNPLLSSIEKVE 196
Query: 274 LVMQ---LNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVD 330
+Q +++ +VP+ L + +R+ + +G VQD SA LV ++D
Sbjct: 197 TALQETGIDVSRVPY-----LPQALRINGSTGAIQNLPGFNDGWWTVQDSSAQLVSHLLD 251
Query: 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTI 390
PQ G+ I+D CAAPGGKT ++A + QG ++A D RLR L + K Q+ S+ +
Sbjct: 252 PQSGEFIIDACAAPGGKTTHIAELMGDQGTIWACDRTASRLRKLQQNTKRLQLKSIQIQV 311
Query: 391 HADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
D R F + KCD++LLD PCSGLG L++
Sbjct: 312 -GDSRHF-EQFIDKCDRLLLDVPCSGLGTLNR 341
>gi|113474586|ref|YP_720647.1| sun protein [Trichodesmium erythraeum IMS101]
gi|110165634|gb|ABG50174.1| sun protein [Trichodesmium erythraeum IMS101]
Length = 443
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 112/323 (34%), Positives = 166/323 (51%), Gaps = 16/323 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ DL D + RLVT++V G +R +R LD +I L +K P L IL IG Y++
Sbjct: 31 LKKNDLIDANRRLVTELVYGCVRRQRSLDAIIDQLA--KKKSPQQHPYLRIILHIGLYQL 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A VD V LAK VNG+LR+ + + N ++ LP+
Sbjct: 89 SYLEQIPESAAVDTTVELAKQNKFAKLAGFVNGLLREYI--RQNLTINLPE------NPV 140
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK-GVTRADLVMQLN 279
+ L YS P W+V+ W + LG EA KL W N PS LR N K V ++ M+
Sbjct: 141 QKLGISYSFPNWIVKYWIEELGLTEAEKLCYWFNLSPSIDLRINPLKTSVEEVEIAMKNI 200
Query: 280 LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 339
+ V L + + +R+ + + + EG ++QD SA LV +++PQPG+ I+D
Sbjct: 201 GISVSR--ILQVPQALRLNGAVGQIQKLPGYNEGWWSIQDSSAQLVCYLLNPQPGEIIID 258
Query: 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 399
CAAPGGKT ++ + G ++AID+ RL+ L + Q+ S I D R +
Sbjct: 259 ACAAPGGKTTHIGELMGDNGKIFAIDMTASRLKKLESNTERLQLKS-ISISRGDSRNLTE 317
Query: 400 NSTVKCDKVLLDAPCSGLGVLSK 422
+ D+VLLD PCSGLG L +
Sbjct: 318 FIN-QADRVLLDVPCSGLGTLHR 339
>gi|335049751|ref|ZP_08542737.1| ribosomal RNA small subunit methyltransferase B [Megasphaera sp.
UPII 199-6]
gi|333762246|gb|EGL39750.1| ribosomal RNA small subunit methyltransferase B [Megasphaera sp.
UPII 199-6]
Length = 442
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 110/322 (34%), Positives = 168/322 (52%), Gaps = 21/322 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L DRD R T++V GT+R+ LD I +L +++ M+ + ILR+G Y++ LD
Sbjct: 34 LSDRDRRFYTELVYGTLRYMAMLDRAIGML--SKRSLQQMDAVCAAILRLGLYQLQYLDK 91
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL---EGNDRAQARA 222
+PP A E V LA+ G VN +LR N+L P++ +
Sbjct: 92 VPPSAACYEAVALARKMGHEGMAKFVNAVLR--------NALRRPEVFVVPSRQEDEVLH 143
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
LA Y W +RR + G EE +KL + ++ P +R ++K ++R + L
Sbjct: 144 LALTYHQQNWFIRRCLQQYGFEETVKLCRFFDTIPELCVRIQTQK-ISREKAMAMLAEKG 202
Query: 283 VPHELSLHLDE--FIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ + E +I +QN+ LL G +QDE++ LV V+DPQPG ++D
Sbjct: 203 IVTRPGRYAPESLYIETNDAVQNL---ELLAAGRAMIQDEASQLVAHVLDPQPGDVVLDV 259
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
CAAPGGKT ++AS LVY DI + +L+++ E AK Q+++ IRTI D +
Sbjct: 260 CAAPGGKTTHIASLGGPDCLVYGADIYEHKLQLIRENAKKLQLSN-IRTILQDAVRIGER 318
Query: 401 STVKCDKVLLDAPCSGLGVLSK 422
K D+VL+DAPCSGLG+L +
Sbjct: 319 FPAKADRVLVDAPCSGLGILRR 340
>gi|402833087|ref|ZP_10881709.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
CM52]
gi|402281454|gb|EJU30089.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
CM52]
Length = 443
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 108/331 (32%), Positives = 175/331 (52%), Gaps = 29/331 (8%)
Query: 102 FRTKDLDDRDLRLVTDIV------GGTIRW--RRYLDHLICLLCHDEKTFSSMEPLLLQI 153
R L + D R T++V GGT+ W RRYL+ + S + P++ I
Sbjct: 30 LRAAKLSEVDRRFATELVYGAAKAGGTLDWILRRYLN----------RPLSKIPPMVRDI 79
Query: 154 LRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL 212
LR+G Y++ L +P A + V + K G VN +LR + + P K
Sbjct: 80 LRLGIYQLFFLARVPASAACNTAVEMTKRCSHAGTVKFVNAVLRTAAREPEKATFPTGKA 139
Query: 213 EGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA 272
+A LA HP W+VRRW + G EEA L ++N+ + SLR N+ K +TR
Sbjct: 140 H-----EAENLALSLQHPEWLVRRWIRQFGYEEARALCEFDNAQATLSLRTNTLK-ITRD 193
Query: 273 DLVMQLNLLKVPHELSLHLDEFIR-VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
L+ +L+ V E S E I ++ G + +++ L++GL VQDES+ LV ++ P
Sbjct: 194 KLLERLSKEGVEAEPSAWTPEGILCLRHGSLDALES--LQQGLFQVQDESSMLVAHILAP 251
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
+PG+ ++D C+APGGKT ++A+ + +G + A+D+++ ++R + E + + SV +
Sbjct: 252 EPGEFVLDVCSAPGGKTTHIAASMGDRGRIVALDVHEHKMRRIAENCERLGIKSV-EPLL 310
Query: 392 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
D R + + D+VL+DAPCSGLGVL +
Sbjct: 311 LDAREAGRRFSRQADRVLVDAPCSGLGVLRR 341
>gi|333978754|ref|YP_004516699.1| N utilization substance protein B [Desulfotomaculum kuznetsovii DSM
6115]
gi|333822235|gb|AEG14898.1| N utilization substance protein B-like protein [Desulfotomaculum
kuznetsovii DSM 6115]
Length = 453
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 104/313 (33%), Positives = 169/313 (53%), Gaps = 11/313 (3%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D T++ G +R LD L+ + +S P + +LR+G Y+I+ +D +P
Sbjct: 41 DRAFATELAYGVLRRLNTLDWLLGHFL--RQPLASQNPWIRNLLRLGAYQIMYMDRVPDS 98
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A V+E+ LA+ PGA VNG+LR L + +PLP L+ + A ++ YSH
Sbjct: 99 AAVNESAELARRYGHPGAVGFVNGVLRNLA--RRGRQIPLPDLKDDPVAY---ISLYYSH 153
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSL 289
P W+VRRW K G EE I L NN ++R N+ K ++R +L+ +L V E +
Sbjct: 154 PAWLVRRWLKEYGLEETIALCQANNGPAPNTVRTNTLK-ISRQELMERLGEEGVTAEPTS 212
Query: 290 HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 349
E +++ G ++ +EGL VQDES+ LV + P PG ++D AAPG KT
Sbjct: 213 FAPEGLKI-AGFPSLHSFAPFEEGLFLVQDESSILVGHALSPLPGARVLDAAAAPGTKTT 271
Query: 350 YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 409
++A + +G + A+DI+ +++++ + + + +R + AD R ++ + D +L
Sbjct: 272 HLAQLMGDRGEITALDIHPHKIKLIAANCRRLGI-TCVRPVEADARHLDQSTHHQWDFIL 330
Query: 410 LDAPCSGLGVLSK 422
LDAPCSGLGVL +
Sbjct: 331 LDAPCSGLGVLRR 343
>gi|15615070|ref|NP_243373.1| hypothetical protein BH2507 [Bacillus halodurans C-125]
gi|10175127|dbj|BAB06226.1| BH2507 [Bacillus halodurans C-125]
Length = 450
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 112/367 (30%), Positives = 191/367 (52%), Gaps = 37/367 (10%)
Query: 61 RAVSAVRLMRIQFGGAFADLL-NKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIV 119
R V+ L++I+ A+++LL N+K + +L+ RD+ L+T++V
Sbjct: 7 REVALETLVQIEKSQAYSNLLLNQK-----------------IKQANLEPRDIGLLTELV 49
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRL 178
GT++ ++ LD+ I K +E + +LR+ Y++V LD +PP+A++ E V +
Sbjct: 50 YGTVQRQKTLDYYIASFVAKGK--RKLEDWVRILLRLSVYQLVYLDKVPPHAIIHEAVNI 107
Query: 179 AKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWT 238
AK G LVNG+LR + + P +E + + LA YS+P W+V+RW
Sbjct: 108 AKKRGHKGISGLVNGVLRSM---QRQGMPPFAAIED----KVKRLAVEYSYPEWLVKRWI 160
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVK 298
G+EE + + P + R N RK T + + +L V + D+ I V
Sbjct: 161 DQYGEEETVSICEEMLLPPKVTARVNVRKR-TVEEALERLEHEGVQATNGVLSDDAIVVD 219
Query: 299 TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 358
G + L ++G +QDES+ LV V P+PG+ I+D CAAPGGK+ +MA + G+
Sbjct: 220 KG--TITSTRLFQDGELTIQDESSMLVARAVAPRPGERILDACAAPGGKSTHMAERMDGE 277
Query: 359 GLVYAIDINKGRLRILNETAK---LHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCS 415
G + ++D+++ +++++ E AK L + + FAD D++L+DAPCS
Sbjct: 278 GTIVSLDMHRHKVKLIEEQAKRLGLDNIKAQTLDARKAREVFADEP---FDRILVDAPCS 334
Query: 416 GLGVLSK 422
GLGV+ +
Sbjct: 335 GLGVIRR 341
>gi|376261164|ref|YP_005147884.1| ribosomal RNA small subunit methyltransferase RsmB/transcription
antitermination factor NusB [Clostridium sp. BNL1100]
gi|373945158|gb|AEY66079.1| ribosomal RNA small subunit methyltransferase RsmB/transcription
antitermination factor NusB [Clostridium sp. BNL1100]
Length = 449
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/314 (32%), Positives = 170/314 (54%), Gaps = 14/314 (4%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D T++V GT++W +D++I + + P + ILR+G Y+++ D +P
Sbjct: 41 DRSFATELVYGTVKWLLQIDYIIG--KYSSIKLKKLSPWIKNILRLGVYQLLHTDRIPVS 98
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ-ARALATIYS 228
A + V LAK + VN +LR + KDN +P P D++ A L+ +YS
Sbjct: 99 AACNTAVDLAKRYGHQASSRFVNAVLRNISKNKDN--IPYP-----DKSDIASYLSILYS 151
Query: 229 HPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELS 288
HPVWMV++W G+E +L+ NN P F +R N+ K R L+ L+ + E
Sbjct: 152 HPVWMVQKWIDLYGKEFTQELLRSNNQVPDFIIRTNTLK-TDRQTLLDALHKEGIDAEPG 210
Query: 289 LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKT 348
+++E + +K ++ K+G VQDES+ L ++DP+ G++++D C+APGGK
Sbjct: 211 RYVEEAVILKNP-SSISNLDSFKKGYFQVQDESSMLAAKILDPKEGETVIDVCSAPGGKA 269
Query: 349 LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKV 408
+MA ++ +G V A DI + +L ++ ++ ++ + IH D +N K D+V
Sbjct: 270 THMAQLMNNKGTVIARDIYQHKLNLIEQSCCRLGIDIIKTEIH-DACNLDENLIGKADRV 328
Query: 409 LLDAPCSGLGVLSK 422
L+DAPCSGLG++ K
Sbjct: 329 LIDAPCSGLGIIRK 342
>gi|138894694|ref|YP_001125147.1| 16S rRNA m(5)C 967 methyltransferase [Geobacillus
thermodenitrificans NG80-2]
gi|196247686|ref|ZP_03146388.1| sun protein [Geobacillus sp. G11MC16]
gi|134266207|gb|ABO66402.1| 16S rRNA m(5)C 967 methyltransferase [Geobacillus
thermodenitrificans NG80-2]
gi|196212470|gb|EDY07227.1| sun protein [Geobacillus sp. G11MC16]
Length = 444
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 110/319 (34%), Positives = 173/319 (54%), Gaps = 18/319 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD RD L+T+IV GTI+ R LD+ + + +E + +LR+ Y++V LD
Sbjct: 34 LDGRDAALLTEIVYGTIQRRDTLDYYLTPFLRKAR---RLEQWVRVLLRLTLYQMVYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG-NDRAQARALA 224
+P +A + E V +AK G +LVNG+LR + LP L+ ND A+ A+A
Sbjct: 91 VPDHAAIFEAVEIAKRRGHRGIASLVNGVLRTI------GREGLPSLDAINDSAKRLAVA 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
T SHP W+VRRW + G EE ++ N P + R N R T + + +L V
Sbjct: 145 T--SHPEWLVRRWIEQYGPEETARMCETNLRPPQSTARVN-RMRATVEEALERLGSEGVK 201
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
L E IR + G N G +QDES+ LV +DP G+ ++DCCAAP
Sbjct: 202 AVRGLLAPEAIRAENG--NFAHTEAFHSGWLTIQDESSMLVARALDPAAGERVLDCCAAP 259
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTV 403
GGKT ++A + G+G V A+DI++ +++++ + A+ +++ IRT+ D R + +
Sbjct: 260 GGKTTHIAERMDGRGEVVAVDIHEHKVKLIEQQAQRLGLDN-IRTLALDSRRLGEWFAPE 318
Query: 404 KCDKVLLDAPCSGLGVLSK 422
D++L+DAPC+G GV+ +
Sbjct: 319 SFDRILVDAPCTGFGVIRR 337
>gi|443328422|ref|ZP_21057020.1| ribosomal RNA small subunit methyltransferase RsmB [Xenococcus sp.
PCC 7305]
gi|442792007|gb|ELS01496.1| ribosomal RNA small subunit methyltransferase RsmB [Xenococcus sp.
PCC 7305]
Length = 480
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 126/375 (33%), Positives = 185/375 (49%), Gaps = 31/375 (8%)
Query: 54 NLEVSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLR 113
NL V R ++ L +I+ G A+ D+ + R L R + RD
Sbjct: 21 NLLVIDSRQLAFEALQKIEQGQAYTDIA--------------LARILSNRK--ISPRDRG 64
Query: 114 LVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVV 172
L++ +V G +R +R L+ LI +K P L IL +G Y++ L+ +P A V
Sbjct: 65 LISQLVYGVVRHKRSLNVLID--NFGKKKAQQQPPKLRIILYLGLYQLGYLNQIPDSAAV 122
Query: 173 DENVRLAKVALRPGAGNLVNGILRKLV-LLKDNNSLPLPKLEGNDRAQARALATIYSHPV 231
+ +V LAK +VNG+LR + + N L P L+ R L +YS P
Sbjct: 123 NTSVELAKANGLSKLAGVVNGVLRNYIRQVSKANHLASPILKLPKDPVQR-LGVLYSFPD 181
Query: 232 WMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN----SRKGVTRADLVMQLNLLKVPHEL 287
W+V W + L EE +L+ W N PS LR N S + V A + + ++P+
Sbjct: 182 WIVETWLQQLSLEETEQLLAWFNQTPSVDLRVNILKKSLEEVESAFAEAGIAVSRIPY-- 239
Query: 288 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 347
L + +R+ G + Q +EG VQD SA LV +DPQPG+SI+D CAAPGGK
Sbjct: 240 ---LPQALRLTGGNGAIDQLPGYREGWWTVQDGSAQLVTHFLDPQPGESIIDACAAPGGK 296
Query: 348 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 407
T ++A L +G ++A D +K RL+ + A Q+NS+ D R D +CD+
Sbjct: 297 TTHIAELLGDRGTIWACDRSKKRLQKVRANAARLQLNSIQIQPAGDSRDLIDLPR-QCDR 355
Query: 408 VLLDAPCSGLGVLSK 422
+LLD PCSGLG L K
Sbjct: 356 LLLDVPCSGLGTLHK 370
>gi|302389593|ref|YP_003825414.1| sun protein [Thermosediminibacter oceani DSM 16646]
gi|302200221|gb|ADL07791.1| sun protein [Thermosediminibacter oceani DSM 16646]
Length = 450
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 110/322 (34%), Positives = 168/322 (52%), Gaps = 16/322 (4%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
T ++ D L+T++V G I+ R LD+++ + + + P++L LR+G Y+I+
Sbjct: 34 TAEISREDRALITELVYGVIKHRIRLDYVLSKFS--KIGLNDINPIILNCLRVGLYQILF 91
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA-- 220
LD +P YA V+E+V +AK+ + AG VNG+LR ++ KD P DR +
Sbjct: 92 LDKIPDYAAVNESVNIAKLYSKKAAG-FVNGVLRNVIRSKDGIDYP-------DRVKDPL 143
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R L YS P WM+RRW G E L N P +R N K + + L L+
Sbjct: 144 RYLVVYYSFPKWMIRRWLDLFGFEFTESLCKAFNEKPRMCVRVNELK-INKTGLQAFLDK 202
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
V H L L+E + + G + + K G QDES+ LV + G++++D
Sbjct: 203 EGVVHNPGLFLEEALYIDDG-PPLTELDSFKNGYFQPQDESSMLVARALGAASGETVLDV 261
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
AAPGGKT ++A + G +YA DI+ R+++L ET + V+ V + D R N
Sbjct: 262 AAAPGGKTTHLAQLMKNSGRIYAWDIHPHRVQLLKETCQRLGVSIVYPEVR-DARVPDKN 320
Query: 401 STVKCDKVLLDAPCSGLGVLSK 422
K D+VL+DAPCSGLGV+ +
Sbjct: 321 LFGKFDRVLVDAPCSGLGVIRR 342
>gi|170077132|ref|YP_001733770.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Synechococcus sp.
PCC 7002]
gi|169884801|gb|ACA98514.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Synechococcus sp.
PCC 7002]
Length = 447
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 114/320 (35%), Positives = 170/320 (53%), Gaps = 14/320 (4%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L D LV ++V GT+R ++ LD +I L +K P L +L++G Y++ LD
Sbjct: 34 NLTGSDRALVAELVYGTVRRQKTLDAIIDQL--GKKPIDQQPPDLRVLLQLGLYQLRYLD 91
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP A V+ +V +AK +VNG LR + +D PL E A A LA
Sbjct: 92 QIPPSAAVNTSVEIAKTNKLGQLAGVVNGCLRGYLRQRDKGHDPLQLPE----AAAERLA 147
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
YS P W++ +W + G EE +L W N LR N + A + +LN V
Sbjct: 148 LQYSFPEWLIGQWLEQFGAEETEQLCQWFNRPAQLDLRVNPLRANVAA-VQDKLNQAGVK 206
Query: 285 HELSLHLDEFIRV--KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
E +L +R+ K GL + KEG +QD SA LV ++DPQPG+ I+D CA
Sbjct: 207 AEAIANLPNALRLVEKRGLIQDLPG--YKEGWWTIQDASAQLVTHLLDPQPGEVIIDACA 264
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402
APGGKT ++A + +G ++A D + R+ + + A+ ++ S+IRT+ D RT++
Sbjct: 265 APGGKTTHIAEKMQDRGTIWASDKYQARINKIEQNARRLKL-SMIRTLIGDSRTYSQFRN 323
Query: 403 VKCDKVLLDAPCSGLGVLSK 422
+ D+VLLD PCSGLG L K
Sbjct: 324 M-ADRVLLDVPCSGLGTLHK 342
>gi|342218721|ref|ZP_08711327.1| ribosomal RNA small subunit methyltransferase B [Megasphaera sp.
UPII 135-E]
gi|341589097|gb|EGS32463.1| ribosomal RNA small subunit methyltransferase B [Megasphaera sp.
UPII 135-E]
Length = 445
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 111/316 (35%), Positives = 162/316 (51%), Gaps = 13/316 (4%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L DRD R TD+V GT+R L+ + L + ++PL ILR+G Y++ +D
Sbjct: 34 LADRDRRFYTDLVYGTLRHMMILERAMRKL--SSRPIEKLDPLCRVILRMGLYQLQYMDK 91
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+PP A +E V+LA+ G VN ILR L+ LPK E + LA
Sbjct: 92 VPPSAACNEAVKLARSLGNEGMAKFVNAILRSA--LRQPQVFALPKKEDDP---ILYLAL 146
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
Y W VR + G +E L + + P LR + + ++ + + L+ + +
Sbjct: 147 SYHQQEWFVRWCCERFGMKETEDLCAYFDKVPELCLRLQTNR-ISIVEGMQILDQAGISY 205
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ E I + T Q + LL+EG +QDE++ LV +VDPQPG+ IVD CAAPG
Sbjct: 206 RKGKVVPECIYITTS-QAIESIPLLREGKALIQDEASQLVAHIVDPQPGEIIVDACAAPG 264
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHADLRTFADNSTVK 404
GKT ++A+ +VY DI +L+++ E A +L N IRTI D R K
Sbjct: 265 GKTTHLATLGGKTAIVYGCDIYTHKLKLIEENASRLGLAN--IRTIQQDARQLGQQFLAK 322
Query: 405 CDKVLLDAPCSGLGVL 420
D+VL+DAPCSGLG+L
Sbjct: 323 ADRVLVDAPCSGLGIL 338
>gi|416406060|ref|ZP_11688032.1| Ribosomal RNA small subunit methyltransferase B [Crocosphaera
watsonii WH 0003]
gi|357261147|gb|EHJ10449.1| Ribosomal RNA small subunit methyltransferase B [Crocosphaera
watsonii WH 0003]
Length = 452
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/336 (34%), Positives = 166/336 (49%), Gaps = 12/336 (3%)
Query: 90 DNEMGYVERTL--GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
D + Y + L +L D L T++V G IR +R LD LI L +K
Sbjct: 22 DRKNSYTDVALNRALNQSNLSSSDRSLCTELVYGIIRHQRTLDSLIDQL--GKKKAQQQP 79
Query: 148 PLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
P L +IL IG Y++ LD +PP A V+ +V LAK +VNGILR+ + N
Sbjct: 80 PNLRRILHIGLYQLRYLDHIPPSAAVNTSVDLAKDNKLQRLSGVVNGILRQYIRSTQGNH 139
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
PL + ND + LA YS P W++ W + G+E K+ W N P+ +R N
Sbjct: 140 DPL--ILPNDTL--KKLAIQYSFPDWIIETWLQKWGEETTEKMCHWFNQSPNIDIRVNPL 195
Query: 267 KGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVV 326
K L QL V +R+K + + +G VQD SA LV
Sbjct: 196 K-TNLETLQTQLTSAGVNVTPLGRFPCALRLKGKIGTIPTLPGFSQGHWTVQDTSAQLVS 254
Query: 327 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV 386
+DPQPG++I+D CAAPGGKT ++A + QG ++A D RL+ + E A+ ++N
Sbjct: 255 YFLDPQPGETIIDACAAPGGKTTHIAELMGDQGTIFACDRTPSRLKKVQENAQRLELN-C 313
Query: 387 IRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
I T+ D R + K D+VL+D PCSGLG L +
Sbjct: 314 IETVVGDSR-YLQQFINKGDRVLVDVPCSGLGTLHR 348
>gi|392960506|ref|ZP_10325974.1| sun protein [Pelosinus fermentans DSM 17108]
gi|421054737|ref|ZP_15517702.1| sun protein [Pelosinus fermentans B4]
gi|421060987|ref|ZP_15523382.1| sun protein [Pelosinus fermentans B3]
gi|421063840|ref|ZP_15525780.1| sun protein [Pelosinus fermentans A12]
gi|421071600|ref|ZP_15532716.1| sun protein [Pelosinus fermentans A11]
gi|392440418|gb|EIW18098.1| sun protein [Pelosinus fermentans B4]
gi|392446865|gb|EIW24136.1| sun protein [Pelosinus fermentans A11]
gi|392452585|gb|EIW29509.1| sun protein [Pelosinus fermentans B3]
gi|392455083|gb|EIW31890.1| sun protein [Pelosinus fermentans DSM 17108]
gi|392462206|gb|EIW38313.1| sun protein [Pelosinus fermentans A12]
Length = 443
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/317 (36%), Positives = 168/317 (52%), Gaps = 11/317 (3%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+ D+D R +T++V GTI+ LD +I ++ + + P++L ILRIG Y+I L
Sbjct: 34 ISDQDRRFITELVYGTIKAGETLDWIIGHYV--TRSLNKVAPVILNILRIGMYQIFFLSK 91
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A ++ V L K G VN +LR + + P E N + LA
Sbjct: 92 VPVSAACNQAVELTKKYGHAGTVKFVNAVLRNAG--RGPEKVIYPDREKN---IVQFLAL 146
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
Y HP WMV RW K LG + A +L NN P SLR N+ K TR +L+ LNL V
Sbjct: 147 KYFHPQWMVARWAKRLGADAAEELCQINNVTPGLSLRTNTLKN-TREELLEILNLEGVSA 205
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
E S E I V + L++GL +QDES+ LV V+ P+PG+ I+D C APG
Sbjct: 206 EASAWTPEGI-VCHSYPALSTLKSLRDGLFQIQDESSMLVAHVLAPKPGEFIIDACGAPG 264
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405
GK+ ++A+ + +G V + DI +L + E A+ + ++I D T DN +
Sbjct: 265 GKSTHIATLMGNKGRVLSTDIYDHKLALTQENAQRLGL-TIIDVQSLDATTLGDNYARQA 323
Query: 406 DKVLLDAPCSGLGVLSK 422
DKVL+DAPCSGLGVL +
Sbjct: 324 DKVLVDAPCSGLGVLRR 340
>gi|375309204|ref|ZP_09774485.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Paenibacillus sp.
Aloe-11]
gi|375078513|gb|EHS56740.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Paenibacillus sp.
Aloe-11]
Length = 471
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 116/353 (32%), Positives = 187/353 (52%), Gaps = 33/353 (9%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L T++V GT+ R LD+ + +K + ++ + +LR+ Y+IV LD +P +
Sbjct: 62 DAGLATELVYGTVARRNTLDYYLNKFV--QKGTAKLQAWVRSLLRMSVYQIVYLDRIPDH 119
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPK-LEGNDRAQARALATIYS 228
AVV E V +AK G +VNG+LR + L++ + L +P L +R ++ +S
Sbjct: 120 AVVSEAVTIAKRRGHQGISGMVNGVLRSM--LREPDKLRIPDGLSAEER-----ISLEHS 172
Query: 229 HPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK----VP 284
HP W+V+RW K G E A + +N P+ S+R N+ +T D ++ L K VP
Sbjct: 173 HPQWLVKRWIKQYGVETAEAICQADNEPPTVSVRVNTT--MTSRDQLLDEMLAKGVDAVP 230
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
+S + I V++G N+ +GL +VQDES+ LV V P+PG ++DCCAAP
Sbjct: 231 SVVSPY---GIVVRSG-GNMALTSWYTDGLLSVQDESSMLVAEAVAPEPGMLVLDCCAAP 286
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STV 403
GGKT +MA + QG + A D++ + ++ E A +++V T+ D D +
Sbjct: 287 GGKTAHMAELMKDQGRIIANDLHAHKHHLIQEQADRLGLDAV-ETVTGDALELKDRYAPA 345
Query: 404 KCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
D++LLDAPCSG GV+ + LR+ KT ++ + + +Y LL
Sbjct: 346 SFDRILLDAPCSGFGVIRRK----------PDLRWSKTEQDVRDITQLQYELL 388
>gi|126656069|ref|ZP_01727453.1| Fmu, rRNA SAM-dependent methyltransferase [Cyanothece sp. CCY0110]
gi|126622349|gb|EAZ93055.1| Fmu, rRNA SAM-dependent methyltransferase [Cyanothece sp. CCY0110]
Length = 452
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/323 (36%), Positives = 165/323 (51%), Gaps = 20/323 (6%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L+ D L T +V G +R +R LD LI L +K P L +IL IG Y++ L+
Sbjct: 40 NLNPSDRSLCTQLVYGIVRHQRTLDTLIDQL--GKKKAQQQPPDLRRILHIGLYQLRYLN 97
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP A V+ +V LAK +VNGILR+ + + PL L N +A
Sbjct: 98 HIPPSAAVNTSVNLAKDYQLNRLSGVVNGILRQYIRKSKESQDPL-ILPSNP---IEKIA 153
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL-----N 279
YS P WM+ W K G+E KL W N P+ +R N K T L QL N
Sbjct: 154 IQYSFPNWMIETWVKQWGEETTEKLCYWFNQTPTIDIRINPLK-TTLQTLENQLIETGVN 212
Query: 280 LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 339
+ +P +R++ + + EG +QD SA LV ++DPQPG++I+D
Sbjct: 213 VTPLPP-----FPCTLRLQGKIGTIQTLPGFHEGHWTIQDSSAQLVSYLLDPQPGETIID 267
Query: 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 399
CAAPGGKT ++A + QG V A D RL+ + + A+ Q+NS I+TI D R F
Sbjct: 268 ACAAPGGKTTHIAELMGDQGTVIACDRTPSRLKKVQQNAQRLQLNS-IQTILGDSRHFT- 325
Query: 400 NSTVKCDKVLLDAPCSGLGVLSK 422
+ D+VL+D PCSGLG L +
Sbjct: 326 QFIDQGDRVLVDVPCSGLGTLHR 348
>gi|310642738|ref|YP_003947496.1| ribosomal RNA small subunit methyltransferase b [Paenibacillus
polymyxa SC2]
gi|386041819|ref|YP_005960773.1| sun protein [Paenibacillus polymyxa M1]
gi|309247688|gb|ADO57255.1| Ribosomal RNA small subunit methyltransferase B [Paenibacillus
polymyxa SC2]
gi|343097857|emb|CCC86066.1| sun protein [Paenibacillus polymyxa M1]
Length = 471
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 111/352 (31%), Positives = 192/352 (54%), Gaps = 31/352 (8%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D+ L T++V GT+ R LD+ + +K + ++P + +LR+ Y++V LD +P +
Sbjct: 62 DVGLTTELVYGTVARRNTLDYFLNKFV--QKGTAKLQPWVRSLLRMSVYQLVYLDRVPDH 119
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPK-LEGNDRAQARALATIYS 228
AVV E V +AK G +VNG+LR + L++ + L +P L +R ++ +S
Sbjct: 120 AVVSEAVTIAKRRGHQGISGMVNGVLRSM--LREPDKLRIPDGLSAEER-----ISLEHS 172
Query: 229 HPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL---NLLKVPH 285
HP W+V+RW K G + A + NN P+ S+R N+ +R L+ ++ + VP
Sbjct: 173 HPQWLVKRWIKQYGVDTAEAICKANNEPPAVSVRVNTTM-TSRDQLLDEMVAKGIDAVPS 231
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+S + I V++G N+ +GL +VQDES+ LV V P+PG +++DCCAAPG
Sbjct: 232 PVSPY---GIVVRSG-GNMALTSWYTDGLLSVQDESSMLVAEAVAPEPGMTVLDCCAAPG 287
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404
GKT +MA + +G + A D++ + +++ E A +++V T+ D + +
Sbjct: 288 GKTAHMAELMKDRGRIVANDLHAHKHQLIREQASRLGLDAV-ETVTGDALDLKERYAPAS 346
Query: 405 CDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
D++LLDAPCSG GV+ + LR+ KT+ ++ + + ++ LL
Sbjct: 347 FDRILLDAPCSGFGVIRRK----------PDLRWSKTAEDVRDITQLQHELL 388
>gi|51892487|ref|YP_075178.1| hypothetical protein STH1349 [Symbiobacterium thermophilum IAM
14863]
gi|51856176|dbj|BAD40334.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
14863]
Length = 459
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/319 (33%), Positives = 169/319 (52%), Gaps = 12/319 (3%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD R+ L T++ G R R LD I + + M+P + ILR Y+I+ +D
Sbjct: 43 LDGRERALATELAYGVTRRRATLDWAIGQVA--ARPLEKMDPWVRNILREAAYQILYMDR 100
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+PP A VD+ V LA+ G VNG+LR L+ + LP P E D RALA
Sbjct: 101 IPPAAAVDQAVELARQYGHEGVAKFVNGVLRNLI--RRLPGLPWPD-EAAD--PVRALAV 155
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
+S+P W+V +W + G+ EA++L+ N P ++R N K TR + L V
Sbjct: 156 QHSYPEWLVAQWLERFGRGEAVRLLEAGNQVPPLTVRVNRLKA-TREEAAAALAAEGVRT 214
Query: 286 ELSLHLDEFIRVK--TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
E + H + + ++ T ++ + +K+GL VQDES+ L AV++PQPG ++D AA
Sbjct: 215 EPTRHSPQGLIIQDLTSASSLERLEAMKQGLITVQDESSMLAAAVLNPQPGWMVIDVAAA 274
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403
PGGK ++A + +G V A+DI+ ++ ++ E A+ +++ + D R +
Sbjct: 275 PGGKATHLAELMDNRGRVIALDIHPHKVALIEENAE-RLGTTIVEAVCLDARRVGEAMPE 333
Query: 404 KCDKVLLDAPCSGLGVLSK 422
+ D VL D PCSGLG L++
Sbjct: 334 RADAVLCDLPCSGLGTLAR 352
>gi|431794643|ref|YP_007221548.1| ribosomal RNA small subunit methyltransferase RsmB
[Desulfitobacterium dichloroeliminans LMG P-21439]
gi|430784869|gb|AGA70152.1| ribosomal RNA small subunit methyltransferase RsmB
[Desulfitobacterium dichloroeliminans LMG P-21439]
Length = 453
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 128/399 (32%), Positives = 201/399 (50%), Gaps = 43/399 (10%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDL-DDRDLRLVTDIV 119
RA++ L RI+ A+A+LL +K DL D RD +L T +V
Sbjct: 7 RALAVRILKRIEEENAYANLLLQKA------------------LHDLADPRDRQLTTLLV 48
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRL 178
G+++ R LD+ L H K S + + ILR+ ++I+ L +P A ++E V L
Sbjct: 49 NGSLKNRLTLDY--ALRRHLRKPLSQLPHEVRWILRVSTFQILYLSRIPASAAINEGVEL 106
Query: 179 AKVALRPGA-GNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRW 237
K R G +LVN +LR++ L+ + P +R +R L+ YSHP WMV+RW
Sbjct: 107 TK--RRQGKYTSLVNSVLRRV--LESGWDMEWP---SKEREPSRYLSLRYSHPEWMVKRW 159
Query: 238 TKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRV 297
K G EE L NN +R N+ K +TR +LV +L V + E + +
Sbjct: 160 LKRYGMEETEALCQANNEPAPTWIRTNTLK-ITRDELVERLTNEGVQVTWGERVPESLLI 218
Query: 298 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSG 357
+ ++ + +EGL VQDES+ L+ V++PQ GQ ++D CAAPGGKT ++A +
Sbjct: 219 E-DFGSIERLPSFQEGLFTVQDESSQLIAHVLNPQRGQRVLDVCAAPGGKTTHLAQRMEN 277
Query: 358 QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGL 417
+G + A D++ +++I+ E A+ + ++I D R C KVL+DAPCSGL
Sbjct: 278 EGEIQAFDLHPHKVKIIEELAQRLGI-TIIHAQAGDARELQGIGNSTCHKVLVDAPCSGL 336
Query: 418 GVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
GV+ + +R+ KT ++ L E + LL
Sbjct: 337 GVIRRRA----------DMRWHKTEEEIKSLPELQLALL 365
>gi|340355046|ref|ZP_08677739.1| RNA methyltransferase Sun [Sporosarcina newyorkensis 2681]
gi|339622727|gb|EGQ27241.1| RNA methyltransferase Sun [Sporosarcina newyorkensis 2681]
Length = 446
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 118/360 (32%), Positives = 189/360 (52%), Gaps = 40/360 (11%)
Query: 68 LMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRR 127
LM I+ AF++LL K DL +D L+T++ GT++ +
Sbjct: 21 LMDIENEQAFSNLLLHKT----------------IELYDLPQKDRALLTELTYGTLQQQM 64
Query: 128 YLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPG 186
LD+ + + ++P + Q+LR+ Y+I+ L +PP+AVV+E V++A G
Sbjct: 65 TLDYYL-----EPYIRGKLQPWVRQLLRMSVYQIIYLSKIPPHAVVNEAVKIANKRGHKG 119
Query: 187 AGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEA 246
++VNGILR + L++ +P L+ D R L+ SHP W++RRW + G EEA
Sbjct: 120 VSSMVNGILRSI--LREG----VPSLDEIDDPVVR-LSIETSHPEWLIRRWIEQYGMEEA 172
Query: 247 IKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN---LLKVPHELSLHLDEFIRVKTGLQN 303
+ V NN P + R NS K R +++ L +L P L+ D I+V++G N
Sbjct: 173 TAIAVVNNLPPVTTARINSTK-TNRGEVIGLLKKEGVLASPGNLT---DSSIQVESG--N 226
Query: 304 VIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYA 363
+ ++GL VQDES+ L + +PG ++D CAAPGGKT ++A + +G V A
Sbjct: 227 LASTEAFQQGLLTVQDESSMLPALALQVEPGMKVLDMCAAPGGKTTHIAERMKDEGEVQA 286
Query: 364 IDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAPCSGLGVLSK 422
D++ +LR++ + A+ + S I T D R + D+VL+DAPCSGLGV+ +
Sbjct: 287 HDLHPHKLRLIEQNAERLGLTS-IHTNSGDSRELLSTYEPQSFDRVLVDAPCSGLGVIRR 345
>gi|308069674|ref|YP_003871279.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Paenibacillus
polymyxa E681]
gi|305858953|gb|ADM70741.1| Ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Paenibacillus
polymyxa E681]
Length = 471
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 121/402 (30%), Positives = 210/402 (52%), Gaps = 47/402 (11%)
Query: 61 RAVSAVRLMRIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIV 119
R V+ L+ ++ GA+++L LN++ + +G L D L T++V
Sbjct: 28 REVALDVLIGVEQEGAYSNLELNRRLQQAG-----------------LSASDAGLATELV 70
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRL 178
GT+ R LD+ + +K + ++ + +LR+ Y++V LD +P +AVV E V +
Sbjct: 71 YGTVARRNTLDYFLNKFV--QKGTAKLQAWVRSLLRMSVYQLVYLDRVPDHAVVSEAVTI 128
Query: 179 AKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWT 238
AK G +VNG+LR + L++ + L +P +D + ++ +SHP W+V+RW
Sbjct: 129 AKRRGHQGISGMVNGVLRSM--LREPDKLRIP----DDLSPEERISLEHSHPQWLVKRWI 182
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN---LLKVPHELSLHLDEFI 295
K G + A + NN P+ S+R N+ +R L+ ++N L VP +S + I
Sbjct: 183 KQYGADTAEAICQANNEPPAVSVRVNTTM-TSRDQLLDEMNSKGLDAVPSAVSPY---GI 238
Query: 296 RVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL 355
V++G N+ +GL +VQDES+ LV V P+PG ++DCCAAPGGKT +MA +
Sbjct: 239 VVRSG-GNMALTSWYTDGLLSVQDESSMLVAEAVAPEPGMLVLDCCAAPGGKTAHMAELM 297
Query: 356 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPC 414
G + A D++ + +++ E A +++V T+ D + + D++LLDAPC
Sbjct: 298 KDHGRIVANDLHAHKHQLIREQANRLGLDAV-ETVTGDALELKERYAPASFDRILLDAPC 356
Query: 415 SGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
SG GV+ + LR+ KT+ ++ + + ++ LL
Sbjct: 357 SGFGVIRRK----------PDLRWSKTAQDVRDITQLQHELL 388
>gi|257058561|ref|YP_003136449.1| sun protein [Cyanothece sp. PCC 8802]
gi|256588727|gb|ACU99613.1| sun protein [Cyanothece sp. PCC 8802]
Length = 451
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 129/372 (34%), Positives = 187/372 (50%), Gaps = 35/372 (9%)
Query: 56 EVSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLV 115
+++ R ++ V L I+ G F D+ ++R G ++ DL D LV
Sbjct: 6 QITHARPLALVILREIERRGTFTDI--------------AIDR--GLKSTDLSGSDRALV 49
Query: 116 TDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL-DMPPYAVVDE 174
T++V G +R +R LD LI L +K P L IL IG Y++ L +PP A V+
Sbjct: 50 TELVYGIVRRKRTLDTLIDQLG--KKASHQQPPDLRLILYIGLYQLRYLSQIPPSAAVNT 107
Query: 175 NVRLAKVALRPGAGNLVNGILRKLVLL--KDNNSLPLPKLEGNDRAQARALATIYSHPVW 232
V LAK +VNGILR+ + L ++N+ L LP D +R L +YS P +
Sbjct: 108 AVNLAKENSLQRLSGVVNGILRQYIRLAQENNDPLILP-----DDPISR-LGVLYSFPDF 161
Query: 233 MVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA--DLVMQLNLLKVPHELSLH 290
M++ W + G E +L W N P +R N K + Q NL +P E+
Sbjct: 162 MIKLWLEQWGLETTEELCNWFNQPPVLDIRINPLKTTLEEVKTTLSQGNLTLMPLEIPQG 221
Query: 291 LDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLY 350
L ++ KTG + KEG VQD SA LV ++DPQP + I+D CAAPGGKT +
Sbjct: 222 LR--LQGKTGAIQDLPG--FKEGWWTVQDSSAQLVSHLLDPQPSEVIIDACAAPGGKTTH 277
Query: 351 MASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410
+A + QG ++A D RL+ L+ + Q+NS I+ + D R D D+VL+
Sbjct: 278 IAELMGDQGTIWACDRYASRLKKLSANKERLQLNS-IKIVTGDSRQL-DQFQGIADRVLV 335
Query: 411 DAPCSGLGVLSK 422
DAPCSGLG L +
Sbjct: 336 DAPCSGLGTLHR 347
>gi|307150080|ref|YP_003885464.1| sun protein [Cyanothece sp. PCC 7822]
gi|306980308|gb|ADN12189.1| sun protein [Cyanothece sp. PCC 7822]
Length = 450
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 119/333 (35%), Positives = 173/333 (51%), Gaps = 30/333 (9%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYE 160
G + L D LVT++V G +R R LD LI L +KT + P L IL+IG Y+
Sbjct: 32 GLKQAQLKSLDRGLVTELVYGIVRRVRTLDQLITQL--GKKTATQQPPDLRIILQIGLYQ 89
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKL--VLLKDNNSLPLPKLEGNDR 217
+ LD +P A V+ +V LAK +VNGILR+ + + + L LP +DR
Sbjct: 90 LRYLDQIPVSAAVNTSVELAKKNQLGKLSGVVNGILRQYDRIQAQGKDPLELP----SDR 145
Query: 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK--------GV 269
L ++S P W+V++W + G+ E KL W N +R N K G
Sbjct: 146 I--NRLGVLHSFPNWIVQQWLEEWGEGETEKLCEWFNQPAMIDIRVNLLKTTVEEVELGF 203
Query: 270 TRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVV 329
++A + +L VPH L + +R+ G +++ Q +EG VQD SA LV ++
Sbjct: 204 SKAGV----KVLPVPH-----LPQALRLIGGSRSISQLPGFEEGWWTVQDSSAQLVTHLL 254
Query: 330 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRT 389
DPQP + I+D CAAPGGKT ++A + +G ++A D RLR + + A+ Q+NS I+
Sbjct: 255 DPQPEEIIIDACAAPGGKTTHIAELMQDRGTIWACDRVASRLRKVQQNAQRLQLNS-IKI 313
Query: 390 IHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
D R D+VL+DAPCSGLG L K
Sbjct: 314 CSGDSRQLTQFRET-ADRVLIDAPCSGLGTLHK 345
>gi|218245524|ref|YP_002370895.1| sun protein [Cyanothece sp. PCC 8801]
gi|218166002|gb|ACK64739.1| sun protein [Cyanothece sp. PCC 8801]
Length = 451
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 129/372 (34%), Positives = 187/372 (50%), Gaps = 35/372 (9%)
Query: 56 EVSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLV 115
+++ R ++ V L I+ G F D+ ++R G ++ DL D LV
Sbjct: 6 QITHARPLALVILREIERRGTFTDI--------------AIDR--GLKSTDLSGSDRALV 49
Query: 116 TDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL-DMPPYAVVDE 174
T++V G +R +R LD LI L +K P L IL IG Y++ L +PP A V+
Sbjct: 50 TELVYGIVRRKRTLDTLIDQLG--KKASHQQPPDLRLILYIGLYQLRYLSQIPPSAAVNT 107
Query: 175 NVRLAKVALRPGAGNLVNGILRKLVLL--KDNNSLPLPKLEGNDRAQARALATIYSHPVW 232
V LAK +VNGILR+ + L ++N+ L LP D +R L +YS P +
Sbjct: 108 AVNLAKENSLQRLSGVVNGILRQYIRLAQENNDPLILP-----DDPISR-LGVLYSFPDF 161
Query: 233 MVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA--DLVMQLNLLKVPHELSLH 290
M++ W + G E +L W N P +R N K + Q NL +P E+
Sbjct: 162 MIKLWLEQWGLETTEELCNWFNQPPVLDIRINPLKTTLEEVKTTLSQGNLTLMPLEIPQG 221
Query: 291 LDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLY 350
L ++ KTG + KEG VQD SA LV ++DPQP + I+D CAAPGGKT +
Sbjct: 222 LR--LQGKTGAIQDLPG--FKEGWWTVQDSSAQLVSHLLDPQPSEVIIDACAAPGGKTTH 277
Query: 351 MASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410
+A + QG ++A D RL+ L+ + Q+NS I+ + D R D D+VL+
Sbjct: 278 IAELMGDQGTIWACDRYASRLKKLSANKERLQLNS-IKIVTGDSRQL-DQFQGIADRVLV 335
Query: 411 DAPCSGLGVLSK 422
DAPCSGLG L +
Sbjct: 336 DAPCSGLGTLHR 347
>gi|390453286|ref|ZP_10238814.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Paenibacillus
peoriae KCTC 3763]
Length = 471
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 117/357 (32%), Positives = 187/357 (52%), Gaps = 33/357 (9%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D L T++V GT+ R LD+ + +K + ++ + +LR+ Y+IV LD
Sbjct: 58 LSASDAGLATELVYGTVARRNTLDYYLNKFV--QKGTAKLQAWVRSLLRMSVYQIVYLDR 115
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPK-LEGNDRAQARALA 224
+P +AVV E V +AK G +VNG+LR + L++ + L +P L +R ++
Sbjct: 116 IPDHAVVSEAVAIAKRRGHQGISGMVNGVLRSM--LREPDKLRIPDGLSAEER-----IS 168
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK-- 282
+SHP W+V+RW K G E A + NN P+ S+R N+ +T D ++ L K
Sbjct: 169 LEHSHPQWLVKRWIKQYGVETAEAICQANNEPPAVSVRVNTT--MTSRDQLLDEMLAKGV 226
Query: 283 --VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
VP +S + I V++G N+ +GL +VQDES+ LV V P+PG ++DC
Sbjct: 227 NAVPSAVSPY---GIVVRSG-GNMALTSWYTDGLLSVQDESSMLVAEAVAPEPGMLVLDC 282
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
CAAPGGKT +MA + QG + A D++ + ++ E A + +V T+ D D
Sbjct: 283 CAAPGGKTAHMAELMKDQGRIIANDLHAHKHHLIQEQADRLGLEAV-ETVTGDALELKDR 341
Query: 401 -STVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
+ D++LLDAPCSG GV+ + LR+ KT ++ + + ++ LL
Sbjct: 342 YAPASFDRILLDAPCSGFGVIRRK----------PDLRWSKTEQDVRDITQLQHELL 388
>gi|354558670|ref|ZP_08977924.1| sun protein [Desulfitobacterium metallireducens DSM 15288]
gi|353545732|gb|EHC15182.1| sun protein [Desulfitobacterium metallireducens DSM 15288]
Length = 453
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 116/336 (34%), Positives = 176/336 (52%), Gaps = 15/336 (4%)
Query: 90 DNEMGYVERTLGFRTKDLDD-RDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP 148
D E Y L ++++D RD +L+T +V GT++ R LD+ L H S +
Sbjct: 18 DEEEAYANLLLQRELREVEDGRDRQLITQLVNGTLKNRLTLDY--ALRRHLRTPLSGLPH 75
Query: 149 LLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSL 207
+ ILRI ++++ L +P A V+E V + K AG LVN +L K++ N
Sbjct: 76 EVRWILRISAFQLLYLSKIPASAAVNEGVEMTKRRQVKYAG-LVNSVLHKVLDQGWNIRW 134
Query: 208 PLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK 267
P P+ R R L+ YSHP WMV+RW K G EE L NN +R N +
Sbjct: 135 PNPQ-----REAVRYLSARYSHPEWMVKRWLKRYGFEETEALCQTNNEIAPLWIRTNILR 189
Query: 268 GVTRADLVMQLNLLKVPHELSLHLDE-FIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVV 326
+TR +LV +L V L + E + +G + + + +EGL AVQDES+ LV
Sbjct: 190 -ITREELVDRLQKENVEVSLGERVPESLVLENSGALDKLAS--FQEGLFAVQDESSQLVA 246
Query: 327 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV 386
+++PQPG ++D CAAPGGKT ++A + QG + A DI+ ++ ++ + A+ + +
Sbjct: 247 HILNPQPGDIVLDACAAPGGKTTHLAQKMKNQGKILAFDIHPHKVELIAQLAERLGITN- 305
Query: 387 IRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
I+ D R C KVL+DAPCSGLGV+ +
Sbjct: 306 IQAQAGDARELPGIENGTCQKVLVDAPCSGLGVIRR 341
>gi|428781149|ref|YP_007172935.1| ribosomal RNA small subunit methyltransferase RsmB
[Dactylococcopsis salina PCC 8305]
gi|428695428|gb|AFZ51578.1| ribosomal RNA small subunit methyltransferase RsmB
[Dactylococcopsis salina PCC 8305]
Length = 445
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 112/329 (34%), Positives = 171/329 (51%), Gaps = 25/329 (7%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYE 160
F++ ++ V ++V G +R +R LD LI + P L IL+IG Y+
Sbjct: 31 AFQSSHFLPQNYGFVKELVSGIVRRQRTLDALISQFAKKPQ----QPPKLRLILQIGLYQ 86
Query: 161 IVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
+ L +PP A VD +V LAK +VNGILR+ + + + PL + +D +
Sbjct: 87 LRYLTQVPPSAAVDTSVELAKNNGLSKLSGVVNGILRQYIRQAETVADPL--ILPDDPIE 144
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN----SRKGVTRADLV 275
L +S P W+++ W GQE A KL W N P+ LR N S++ V +A +
Sbjct: 145 K--LGVKHSFPNWIIKLWRDEWGQETAEKLAAWFNQSPTIDLRINPLNVSKEAVEKAFME 202
Query: 276 MQLN--LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQP 333
+N L +P+ L R+ + + N+ Q EG VQD SA LV +++PQP
Sbjct: 203 ANINYEFLSLPYGL--------RLTSRVGNIQQLPGFSEGWWTVQDFSAQLVSYLLNPQP 254
Query: 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD 393
G++I+D CAAPGGKT ++A + GL++A+D RL+ + A+ Q S I+T AD
Sbjct: 255 GETIIDACAAPGGKTTHIAELMGDDGLIWALDRASSRLKKVISNAERLQHKS-IKTCVAD 313
Query: 394 LRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
+R ++VL+DAPCSGLG L +
Sbjct: 314 VREMKQFQQA-ANRVLVDAPCSGLGTLHR 341
>gi|78189086|ref|YP_379424.1| Fmu, rRNA SAM-dependent methyltransferase [Chlorobium
chlorochromatii CaD3]
gi|78171285|gb|ABB28381.1| Fmu, rRNA SAM-dependent methyltransferase [Chlorobium
chlorochromatii CaD3]
Length = 429
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 106/315 (33%), Positives = 164/315 (52%), Gaps = 27/315 (8%)
Query: 114 LVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL-DMPPYAVV 172
L T++V G +RW+ LD I L H + + P+L ILR+G Y+++ L +P +A V
Sbjct: 42 LATELVNGVLRWQLQLDSRISLAYHHK--LEAAAPVLRNILRLGAYQLLFLTKIPRWAAV 99
Query: 173 DENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVW 232
+E V+LA+ LVNG+LR L D + KL R+QA LA +SHP W
Sbjct: 100 NECVKLARKYKGERMAKLVNGVLRHL----DGGNEAFEKLL-QGRSQAEQLALQFSHPAW 154
Query: 233 MVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR-----ADLVMQLNLLKVPHEL 287
++ RW G+ + +L+ +NN P R N K + + ++P+
Sbjct: 155 LIERWLATYGELKTRQLLHYNNQAPMMGFRINRLKADAKDFFDNPTFAAAMEPCELPY-- 212
Query: 288 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 347
EF +T LQ EG+ +VQ+ + L +++P P ++D CAAPGGK
Sbjct: 213 CFLSREFSLFETALQ---------EGVLSVQNPTQALAPLLLNPAPQSVVIDLCAAPGGK 263
Query: 348 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 407
++MA + QG V A+D + +LR L A+ + ++IRT+ D R+ A N ++ D
Sbjct: 264 AMFMAELMHNQGEVIAVDQYEQKLRKLESHAQALGL-TIIRTVAGDARSVAPN--LQADA 320
Query: 408 VLLDAPCSGLGVLSK 422
VLLDAPCSG GV+ +
Sbjct: 321 VLLDAPCSGTGVIGR 335
>gi|254415201|ref|ZP_05028963.1| ribosomal RNA small subunit methyltransferase B [Coleofasciculus
chthonoplastes PCC 7420]
gi|196178007|gb|EDX73009.1| ribosomal RNA small subunit methyltransferase B [Coleofasciculus
chthonoplastes PCC 7420]
Length = 448
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 124/364 (34%), Positives = 176/364 (48%), Gaps = 26/364 (7%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L I GAF D+ ++R L T + DR L+TD+V
Sbjct: 5 RQLAFLALRDIHSHGAFTDI--------------ALDRVLRHTTLNRPDR--ALLTDLVY 48
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GT R R LD LI L +K P L IL +G Y++ L +PP A V+ +V LA
Sbjct: 49 GTTRHTRTLDALIDQL--GKKKAHQQPPDLRLILHLGLYQLRYLQRIPPSAAVNTSVELA 106
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
K G +VNG+LR+ L N L P L+ + R L +YS P W++ W
Sbjct: 107 KANQLKGLAGVVNGVLRQYARLNTNPQLDDP-LQLPPQPIQR-LGILYSFPDWIIELWLN 164
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANS-RKGVTRADLVMQLNLLKVPHELSLHLDEFIRVK 298
LG EE L W N P+ LR N + + MQ ++V + HL + +R +
Sbjct: 165 QLGIEETEALCQWFNQPPTIDLRINPLNASIDTVETAMQAAGIQV--QRLPHLPQALRFQ 222
Query: 299 TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 358
++ EG +QD SA LV +++PQP I+D CAAPGGKT ++A + +
Sbjct: 223 GSTGSIQTLPGFNEGWWTIQDSSAQLVSHLLNPQPHDVIIDACAAPGGKTTHLAELMRDR 282
Query: 359 GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLG 418
G ++A D RL+ + + Q+ S I+ D R F T K D VLLDAPCSGLG
Sbjct: 283 GTIWACDKAASRLKKVKANTQRLQLQS-IQICPGDSRDFP-QFTQKADTVLLDAPCSGLG 340
Query: 419 VLSK 422
L +
Sbjct: 341 TLHR 344
>gi|440683854|ref|YP_007158649.1| sun protein [Anabaena cylindrica PCC 7122]
gi|428680973|gb|AFZ59739.1| sun protein [Anabaena cylindrica PCC 7122]
Length = 455
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 119/335 (35%), Positives = 172/335 (51%), Gaps = 32/335 (9%)
Query: 102 FRTKDLDD----RDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIG 157
F+ D D+ RD RL T++V G +R +R LD LI + K P L IL +G
Sbjct: 32 FKLPDSDNETLRRDRRLTTELVYGCVRRQRTLDTLIDQIA--TKKAQQQPPDLRTILHLG 89
Query: 158 FYEI-VKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGND 216
FY++ + +PP A V+ V LAK G +NG+LR+ + L + +S PL KL N
Sbjct: 90 FYQLRYQEKIPPSAAVNTTVELAKANGLTGLTGFINGLLRQYLRLGEKSSEPL-KLPENS 148
Query: 217 RAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN----SRKGVTRA 272
L +YS P W++ W LG E KL W N P+ LR N S K V A
Sbjct: 149 ---VERLGILYSFPDWIIEVWLAQLGFAETEKLCAWMNQTPTIDLRVNILRSSLKEVESA 205
Query: 273 DL---VMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVV 329
V+ + ++P L L I +QN+ +EG +QD SA LV ++
Sbjct: 206 FQSAGVLVKRIPRLPQALRL-----IGSNGPIQNLPG---FREGWWTIQDSSAQLVGHLL 257
Query: 330 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV-IR 388
DP+PG+ ++D CAAPGGKT ++A + G ++A D RLR L + A+ + S+ I
Sbjct: 258 DPKPGEVVIDACAAPGGKTTHIAELMGDHGKIWACDKTASRLRKLQDNARRLNLQSIEIY 317
Query: 389 TIHA-DLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
T + +L F + + D+VLLDAPCSGLG + +
Sbjct: 318 TGDSCNLPQFYN----QADRVLLDAPCSGLGTMHR 348
>gi|67924848|ref|ZP_00518244.1| Fmu, rRNA SAM-dependent methyltransferase [Crocosphaera watsonii WH
8501]
gi|67853307|gb|EAM48670.1| Fmu, rRNA SAM-dependent methyltransferase [Crocosphaera watsonii WH
8501]
Length = 452
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 117/336 (34%), Positives = 166/336 (49%), Gaps = 12/336 (3%)
Query: 90 DNEMGYVERTL--GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
D + Y + L +L D L T++V G IR +R LD LI L +K
Sbjct: 22 DRKNSYTDVALNRALNQSNLSSSDRSLCTELVYGIIRHQRTLDSLIDQL--GKKKAQQQP 79
Query: 148 PLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
P L +IL IG Y++ LD +PP A V+ +V LAK +VNGILR+ + N
Sbjct: 80 PNLRRILHIGLYQLRYLDHIPPSAAVNTSVDLAKDNKLQRLSGVVNGILRQYIRSIQGNH 139
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
PL + ND + LA YS P W++ W + G+E K+ W N P+ +R N
Sbjct: 140 DPL--ILPNDTL--KKLAIQYSFPDWIIETWLQKWGEETTEKMCHWFNQSPNIDIRVNPL 195
Query: 267 KGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVV 326
K L QL V +R+K + + +G VQD SA LV
Sbjct: 196 K-TNLETLQTQLTSAGVNVTPLGRFPCALRLKGKIGTIPTLPGFSQGHWTVQDTSAQLVS 254
Query: 327 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV 386
+DPQPG++I+D CAAPGGKT ++A + QG ++A D RL+ + E A+ ++N
Sbjct: 255 YFLDPQPGETIIDACAAPGGKTTHIAELMGDQGTIFACDRTPSRLKKVQENAQRLELN-C 313
Query: 387 IRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
I T+ D R + K D+VL+D PCSGLG L +
Sbjct: 314 IETVVGDSR-YLQQFINKGDRVLVDVPCSGLGTLHR 348
>gi|172035456|ref|YP_001801957.1| rRNA SAM-dependent methyltransferase [Cyanothece sp. ATCC 51142]
gi|354555546|ref|ZP_08974847.1| sun protein [Cyanothece sp. ATCC 51472]
gi|171696910|gb|ACB49891.1| Fmu, rRNA SAM-dependent methyltransferase [Cyanothece sp. ATCC
51142]
gi|353552605|gb|EHC22000.1| sun protein [Cyanothece sp. ATCC 51472]
Length = 452
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 117/336 (34%), Positives = 168/336 (50%), Gaps = 12/336 (3%)
Query: 90 DNEMGYVERTL--GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
D + Y + L F L+ D L T++V G IR +R LD LI L +K
Sbjct: 22 DRKNSYTDIALDRAFNQTHLNPSDRSLCTELVYGIIRHQRTLDTLIDQL--GKKKAKQQP 79
Query: 148 PLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
P L +IL IG Y++ LD +PP A V+ +V LAK +VNGILR+ + + +
Sbjct: 80 PDLRRILHIGLYQLRYLDNIPPSAAVNTSVNLAKEYKLNRLSGVVNGILRQYLRSSETDG 139
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
PL L N +A YS P WM+ W + G+ +L W N P+ +R N
Sbjct: 140 DPL-ILPPNP---IEKIAIQYSFPDWMIETWVQQWGEATTEQLCHWFNQTPTIDIRINPL 195
Query: 267 KGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVV 326
K T L QL + L +R++ + ++ +G +QD SA LV
Sbjct: 196 K-TTLETLQTQLTEAGINATPFPPLPCTLRLQGKIGSIQTLPGFHQGHWTIQDSSAQLVS 254
Query: 327 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV 386
++DPQPG++I+D CAAPGGKT +MA + QG + A D RL+ + + A+ Q+NS
Sbjct: 255 YLLDPQPGETIIDACAAPGGKTTHMAELMGDQGTIIACDRTPSRLKKVQQNAQRLQLNS- 313
Query: 387 IRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
I+TI D R D+VL+D PCSGLG L +
Sbjct: 314 IQTILGDSRHLPQLINT-ADRVLVDVPCSGLGTLHR 348
>gi|428204437|ref|YP_007083026.1| ribosomal RNA small subunit methyltransferase RsmB [Pleurocapsa sp.
PCC 7327]
gi|427981869|gb|AFY79469.1| ribosomal RNA small subunit methyltransferase RsmB [Pleurocapsa sp.
PCC 7327]
Length = 446
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 117/317 (36%), Positives = 166/317 (52%), Gaps = 18/317 (5%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D LVT++V G +R +R LD LI L +K S P L IL+IG Y++ L +P
Sbjct: 39 DRALVTELVYGIVRRQRSLDALIDQL--GKKKASQQPPNLRIILQIGLYQLRYLSHIPAS 96
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A VD +V LAK +VNG+LR+ L S PL +L + + L YS
Sbjct: 97 AAVDTSVELAKKNGLKSLSGVVNGLLRQYERLAAQGSDPL-ELPTDP---VQRLGIAYSF 152
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKG----VTRADLVMQLNLLKVPH 285
P W+++ W G E KL W N P LR N K V A + + +VP+
Sbjct: 153 PDWIIQLWLAQFGVAETEKLCEWFNRPPEIDLRVNILKTTIDEVATALADAGITVSRVPY 212
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
L + +R+ G +++ Q +EG VQD SA LV ++DPQPG+ ++D CAAPG
Sbjct: 213 -----LPQALRLIGGARSIQQLPGFQEGWWTVQDSSAQLVAHLLDPQPGEVVIDACAAPG 267
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405
GKT ++A + +G ++A D + RLR L E + Q+ S I+ D R F+ +
Sbjct: 268 GKTTHIAELMGDRGTIWACDRVESRLRKLQENIQRLQLQS-IQICTGDSRQFSQFRQ-RG 325
Query: 406 DKVLLDAPCSGLGVLSK 422
D+VLLDAPCSGLG L +
Sbjct: 326 DRVLLDAPCSGLGTLHR 342
>gi|427708448|ref|YP_007050825.1| sun protein [Nostoc sp. PCC 7107]
gi|427360953|gb|AFY43675.1| sun protein [Nostoc sp. PCC 7107]
Length = 449
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 116/331 (35%), Positives = 163/331 (49%), Gaps = 28/331 (8%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
R L D D RL T++V G++R R LD LI + K P L IL +GFY++
Sbjct: 29 LRKFKLPDSDRRLATELVYGSVRRLRTLDALIDQIA--TKKSHQQPPELRTILHLGFYQL 86
Query: 162 -VKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ +PP A V+ V LAK G VNG+LR+ + L + + PL KL N +
Sbjct: 87 RYQERIPPSAAVNTTVELAKENGFSGLTGFVNGLLRQYIRLTEKSPEPL-KLPENPMER- 144
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
L ++S P W+++ W +G E KL W N P+ LR N ++ NL
Sbjct: 145 --LGILHSFPDWIIQVWLDQIGLAETEKLCEWMNQTPTIDLRINP----------LRTNL 192
Query: 281 LKVPHELSL---------HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
+V L+ HL + +R+ + + EG VQD SA LV ++DP
Sbjct: 193 EQVETALASAGIFTQRISHLPQALRLISSTGGIQNLPGFTEGWWVVQDASAQLVSHLLDP 252
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
Q G+ ++D CAAPGGKT ++A + QG V+A D RLR L E A+ + S I
Sbjct: 253 QAGEVVIDTCAAPGGKTTHIAELMQDQGKVWAGDRTASRLRKLQENARRLNLQS-IEICA 311
Query: 392 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
D R + D+VLLDAPCSGLG L +
Sbjct: 312 GDSRNLPQFYNIG-DRVLLDAPCSGLGTLHR 341
>gi|403069237|ref|ZP_10910569.1| hypothetical protein ONdio_06550 [Oceanobacillus sp. Ndiop]
Length = 451
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 112/360 (31%), Positives = 186/360 (51%), Gaps = 31/360 (8%)
Query: 69 MRIQFGGAFADLLNKKGKGSG------DNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGT 122
M+ Q DLL + K SG DNE+ ++K + +D L+T++V GT
Sbjct: 4 MKYQLRNTILDLLIRIEKDSGFSHLVIDNEL---------KSKRIAPKDEGLLTEVVYGT 54
Query: 123 IRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKV 181
I+ + LD+ + + K M+ + +LR+ Y+++ LD +P +A++ E V +AK
Sbjct: 55 IQRKMTLDYFLNHFVNANK---KMDQWVRMLLRMSIYQMIYLDKVPDHAIIHEAVEIAKQ 111
Query: 182 ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYL 241
G +LVNG+LR + N +P ND A L+ SHP W+V RW
Sbjct: 112 RGHKGVSSLVNGVLRNV----QRNGVPETASIKND---ATRLSIETSHPKWLVERWVSTY 164
Query: 242 GQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGL 301
G + A + N + S+R K +TR + L S+ + I V G
Sbjct: 165 GLQTAKAMCEANLTKKHSSIRVQPLK-ITREKAMQVLREQGFEVRKSIFSPQGIIVDKG- 222
Query: 302 QNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLV 361
N++ L KEG +QD+S+ LV ++DPQPG ++D C+APGGK ++A + +G++
Sbjct: 223 -NILNTMLFKEGYVTIQDQSSMLVAEMLDPQPGMHVLDGCSAPGGKVTHIAEKMENEGVI 281
Query: 362 YAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCDKVLLDAPCSGLGVL 420
+A D++K +++++++ A L + S+I D R D + D++L+DAPCSGLGV+
Sbjct: 282 HAYDLHKKKVKLIDDKAALLHL-SIIDAKPGDARKLEDMHERESFDRILIDAPCSGLGVI 340
>gi|339009262|ref|ZP_08641834.1| ribosomal RNA small subunit methyltransferase B [Brevibacillus
laterosporus LMG 15441]
gi|338773740|gb|EGP33271.1| ribosomal RNA small subunit methyltransferase B [Brevibacillus
laterosporus LMG 15441]
Length = 453
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 112/352 (31%), Positives = 181/352 (51%), Gaps = 26/352 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D+ LVT++V GTI+ R LD +I + ++ +LQ+LR+ Y++ LD
Sbjct: 40 LSKADVGLVTELVYGTIQRRMTLDEVIGQFV--KGGTKKLQGWVLQLLRMSLYQVRFLDR 97
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A V E V +AK G +LVNG+LR +L + + LPK + +A
Sbjct: 98 VPDRAAVHEAVEIAKKRGHKGISSLVNGVLRN-ILRQPESWEKLPK------GITKQIAV 150
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHP W+V+RW K G+E + NN P S+R N + T AD ++Q P
Sbjct: 151 TESHPEWLVKRWVKQYGEETTRAICHSNNQSPMPSIRVNRLR--TTADALLQEMKEAFPE 208
Query: 286 ELSLHLD-EFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
L + + +++G + + +EG C +QDES+ LV + P ++D CAAP
Sbjct: 209 AAKSELTPDALLLQSG--HAAGSSWFQEGFCTIQDESSMLVAPALHLTPNLRVLDACAAP 266
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404
GGKT +MA + QG + A D++ + ++ + AK + ++I T+ AD D + +
Sbjct: 267 GGKTTHMAELMGNQGEILACDVHPHKRELIEQNAKRLGI-TIITTMVADAADLVDRNVGE 325
Query: 405 CDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
D++LLDAPCSG GV+ + L++ KT+ ++ + E +Y LL
Sbjct: 326 FDRILLDAPCSGFGVIRRK----------PDLKWNKTAEDIKAISEIQYDLL 367
>gi|427725626|ref|YP_007072903.1| sun protein [Leptolyngbya sp. PCC 7376]
gi|427357346|gb|AFY40069.1| sun protein [Leptolyngbya sp. PCC 7376]
Length = 450
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 120/367 (32%), Positives = 182/367 (49%), Gaps = 26/367 (7%)
Query: 57 VSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVT 116
+S R ++ + L +I + AF D+ ++R L R L D LV
Sbjct: 1 MSSARQLAFLALRQIMYHKAFTDVA--------------LDRVL--RKSGLRGSDRGLVA 44
Query: 117 DIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDEN 175
++V GT+R ++ LD +I + +K P L +L++G Y+I LD +P A V+ +
Sbjct: 45 ELVYGTVRRQKTLDAIINQV--GKKPIEQQPPDLRVLLQLGLYQIRYLDSIPASAAVNTS 102
Query: 176 VRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVR 235
V LAK +VNG LR+ + L+D N PL E AQ A YS P W+++
Sbjct: 103 VELAKENKLGQLAGVVNGCLRQYLRLQDKNGDPLILPE----AQPEKFALQYSFPEWLIK 158
Query: 236 RWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFI 295
W G+ E +L W N + +R N K V+ LN V E+ +L +
Sbjct: 159 TWLGQFGEAETAQLCEWFNQPSTLDIRINPLKNSVEHVQVL-LNNAGVKCEVIANLPNAL 217
Query: 296 RVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL 355
R+ + KEG +QD SA LV ++DPQP + I+D CAAPGGKT ++A +
Sbjct: 218 RLTEKRGMIQDLPGYKEGWWTIQDASAQLVSHLLDPQPREVIIDACAAPGGKTTHIAELM 277
Query: 356 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCS 415
+G ++A D K R+ + + A+ + S+IRT+ D R + + D+VLLD PCS
Sbjct: 278 GDEGTIWASDKYKARINKIEQNARRLNL-SMIRTLIGDSREYPQFRQM-ADRVLLDVPCS 335
Query: 416 GLGVLSK 422
GLG L K
Sbjct: 336 GLGTLHK 342
>gi|296133297|ref|YP_003640544.1| sun protein [Thermincola potens JR]
gi|296031875|gb|ADG82643.1| sun protein [Thermincola potens JR]
Length = 451
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 105/316 (33%), Positives = 161/316 (50%), Gaps = 11/316 (3%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-M 166
+ +D +T++V GT++ LD + + S+ P + I+R+G Y+I +D +
Sbjct: 36 EKKDRAFITELVYGTLKRLNTLDWIAGRFV--SRPLDSLTPWIRNIIRMGIYQIFFMDKV 93
Query: 167 PPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI 226
P A +E+V LA+ G VNG+LR +V KD P D L+
Sbjct: 94 PNSAACNESVNLARKFGHQGTVKFVNGVLRNVVRHKDRVKWP-----DKDAEPVEYLSIH 148
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHE 286
YSHP WMV W + G EE KL NN P S+R N+ K ++R +L+ L V
Sbjct: 149 YSHPTWMVSLWIEEFGFEETEKLCRANNETPPNSIRTNTLK-ISRDELIGVLAGEGVECR 207
Query: 287 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 346
E I + +G +++ +GL VQDES+ +V +V P+PG ++D C+APGG
Sbjct: 208 KGEFAPETINI-SGFKSIASLKSHAQGLYLVQDESSTMVGHIVAPKPGSKVIDACSAPGG 266
Query: 347 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 406
KT ++A ++ QG + A DI++ ++ ++ E VN +I D R D
Sbjct: 267 KTTHLAQLMNNQGRILAGDIHQHKMGLIKENCSRLGVN-IIEPALVDARELHKEYKEWAD 325
Query: 407 KVLLDAPCSGLGVLSK 422
VL+DAPCSGLGVL +
Sbjct: 326 FVLVDAPCSGLGVLRR 341
>gi|434391954|ref|YP_007126901.1| sun protein [Gloeocapsa sp. PCC 7428]
gi|428263795|gb|AFZ29741.1| sun protein [Gloeocapsa sp. PCC 7428]
Length = 446
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 113/326 (34%), Positives = 162/326 (49%), Gaps = 19/326 (5%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
R DL D RL T++V G++R +R LD LI L +K P L IL +G Y++
Sbjct: 29 LRQTDLSSVDRRLATELVYGSVRRQRSLDALIDQLA--KKKAQQQPPDLRIILHLGLYQL 86
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLL---KDNNSLPLPKLEGNDR 217
LD +P A V+ V LAK G N VNG+LR+ + L +D LP +E
Sbjct: 87 RYLDHIPDAAAVNSTVELAKKNGFSGLANFVNGLLRQYLRLATREDPLKLPAHSVE---- 142
Query: 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANS-RKGVTRADLVM 276
L ++S+P W++ W K G +E +L W N P+ LR N R V + +
Sbjct: 143 ----RLGILHSYPDWIIEVWLKQFGYKETEQLCAWFNQPPAIDLRINPLRASVEKVATAL 198
Query: 277 QLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 336
Q + V +L + +R T + + G VQD SA LV ++DPQPG+
Sbjct: 199 QEAEVGVTR--VANLPQALRFTTSTGAIEKLPGFDAGWWTVQDSSAQLVSHILDPQPGEV 256
Query: 337 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396
++D CAAPGGKT ++A + G ++A D RL+ L + Q+ S I+ D R
Sbjct: 257 VIDACAAPGGKTTHIAELMQDTGTIWACDRTVSRLKKLQQNIARLQLKS-IQICPGDSRN 315
Query: 397 FADNSTVKCDKVLLDAPCSGLGVLSK 422
+ D+VLLDAPCSGLG L +
Sbjct: 316 LPHFVNI-ADRVLLDAPCSGLGTLHR 340
>gi|350270717|ref|YP_004882025.1| rRNA methyltransferase [Oscillibacter valericigenes Sjm18-20]
gi|348595559|dbj|BAK99519.1| rRNA methyltransferase [Oscillibacter valericigenes Sjm18-20]
Length = 445
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 112/318 (35%), Positives = 165/318 (51%), Gaps = 14/318 (4%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D L T IV G ++ R LD + C + ++P L ILRIG Y+I+ LD
Sbjct: 34 LSGADAALATRIVYGVLQNRALLDFYLGAYC--SQKVGHLQPPLADILRIGAYQILFLDK 91
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A V+E+V LAK R A LVN +LRK+ L N LP + D AQ L+
Sbjct: 92 VPDRAAVNESVELAKKKGRGAASGLVNAVLRKVSL----NKAQLPPIPARDEAQY--LSI 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
YSHP W+V+R LG+EE + +N +++ N+ K T ADL+ QL V
Sbjct: 146 RYSHPKWLVKRLLTLLGREETEAFLAADNGVAPLTVQVNTLK-TTAADLIAQLTAAGVTA 204
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ + + + T ++ + G VQD +A LV + P+ GQ ++D CAAPG
Sbjct: 205 SAHPWVPDCLEL-TASGDLTALDAFRSGAFFVQDPAAKLVSLIAAPKKGQRVIDVCAAPG 263
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRL-RILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404
GK+ A + +G ++A D+++ +L RI + +L S I+T AD F +
Sbjct: 264 GKSFGAAVAMGDEGEIFACDLHEKKLGRIRDGAVRLSL--SSIQTFAADGTVFRPDWADS 321
Query: 405 CDKVLLDAPCSGLGVLSK 422
D VL+DAPCSGLG++ K
Sbjct: 322 ADVVLVDAPCSGLGIIRK 339
>gi|374324700|ref|YP_005077829.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Paenibacillus
terrae HPL-003]
gi|357203709|gb|AET61606.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Paenibacillus
terrae HPL-003]
Length = 471
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 115/352 (32%), Positives = 188/352 (53%), Gaps = 31/352 (8%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L T++V GT+ R LD+ + +K + ++ + +LR+ Y+IV LD +P +
Sbjct: 62 DAGLATELVYGTVARRNTLDYFLNKFV--QKGTAKLQAWVRSLLRMSVYQIVYLDRIPDH 119
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPK-LEGNDRAQARALATIYS 228
AVV E V +AK G +VNG+LR + L++ + L +P L +R +A +S
Sbjct: 120 AVVSEAVTIAKRRGHQGISGMVNGVLRSM--LREPDKLRIPDGLSAEER-----IALEHS 172
Query: 229 HPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL---NLLKVPH 285
HP W+V+RW K G + A + NN P+ S+R N+ TR L++++ + VP
Sbjct: 173 HPQWLVKRWIKQYGVDIAEAICRANNEPPAVSVRVNTTM-TTRDQLLIEMLAKGMDAVPS 231
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+S + I V++G N+ +GL +VQDES+ LV V P+P ++DCCAAPG
Sbjct: 232 AVSPY---GIVVRSG-GNMALTTWYTDGLLSVQDESSMLVAEAVAPEPDMLVLDCCAAPG 287
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404
GKT +MA + QG + A D++ + R++ E A +++V T+ D + +
Sbjct: 288 GKTAHMAELMKDQGRIIANDLHAHKHRLIQEQADRLGLDAV-ETVTGDALELKNRYAPAS 346
Query: 405 CDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
D+VLLDAPCSG GV+ + LR+ KT ++ + + ++ LL
Sbjct: 347 FDRVLLDAPCSGFGVIRRK----------PDLRWSKTPQDVRDITQLQHELL 388
>gi|414152954|ref|ZP_11409281.1| Sun protein [Desulfotomaculum hydrothermale Lam5 = DSM 18033]
gi|411455336|emb|CCO07183.1| Sun protein [Desulfotomaculum hydrothermale Lam5 = DSM 18033]
Length = 453
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 108/314 (34%), Positives = 167/314 (53%), Gaps = 13/314 (4%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHD-EKTFSSMEPLLLQILRIGFYEIVKLD-MPP 168
D T++V G +R +L+ + +L H ++ +S + ILR+G Y+I+ + +P
Sbjct: 41 DRAFATELVYGVLR---HLNTIDWILAHFLKQPLASQTVWIRNILRMGTYQIMFMPRIPD 97
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
A +E+V LAK GA N VNG+LR +V +DN P P+ + D +A YS
Sbjct: 98 SAACNESVNLAKKYGHAGAANFVNGVLRNVVRQRDNLDFPDPEQDPVD-----FIALKYS 152
Query: 229 HPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELS 288
HP W+V RW K G I L NNS ++R N+ K ++R +L +L V ++
Sbjct: 153 HPTWLVERWLKEFGFSATIALCQANNSPAPNTVRTNTLK-ISRQELQARLQDEGVKATVT 211
Query: 289 LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKT 348
+ E + + +G + +EGL VQDES+ LV V++P G ++D AAPGGKT
Sbjct: 212 AYAPEGLNL-SGFLSYRSLTTFREGLFQVQDESSMLVAHVLNPASGARVIDVAAAPGGKT 270
Query: 349 LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKV 408
++A + G + A D+ +L ++N+ + +NS I+T AD R D V
Sbjct: 271 THLAQLMGDSGQILAFDLYAHKLDLINDNCRRLGINS-IQTKVADARDIHQEYQGWADYV 329
Query: 409 LLDAPCSGLGVLSK 422
L+DAPCSGLGVL +
Sbjct: 330 LVDAPCSGLGVLRR 343
>gi|403386878|ref|ZP_10928935.1| 16S rRNA methyltransferase B [Clostridium sp. JC122]
Length = 442
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 113/339 (33%), Positives = 166/339 (48%), Gaps = 24/339 (7%)
Query: 91 NEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP 148
N Y LG DL D D LVT+IV GTI+++ +D +I K F +E
Sbjct: 17 NNKAYSNIVLGKELNKSDLSDVDKGLVTEIVYGTIKYKYTIDKIIQSFTG--KNFKKLED 74
Query: 149 LLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSL 207
+L ILRI Y+I LD +PP+A V+E V L K GA LVNG+LR
Sbjct: 75 FVLNILRISIYQIKYLDKIPPFAAVNEAVNLTKKNSSLGASKLVNGVLRNY--------- 125
Query: 208 PLPKLE----GNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRA 263
L LE G D + L YS P W+V + K G++ K+++ N P+ ++R
Sbjct: 126 -LRNLEKSYCGEDPIEK--LCFEYSFPRWLVEHFIKQYGRKTTEKILIGLNERPALTVRV 182
Query: 264 NSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAG 323
N KG ++ + E IR+ G +N+ L KEG VQDESA
Sbjct: 183 NEIKG-EYEEIYNSMENEGYQVSEGYVAPEAIRIVNG-RNIEDNRLFKEGYVTVQDESAM 240
Query: 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV 383
LV ++ ++D C+APGGKT +++ + G V A DI++ +L ++ + AK +
Sbjct: 241 LVAPSMELNSDSRVLDLCSAPGGKTTHISEIMDNTGEVLAFDIHENKLSLIKDNAKRLNI 300
Query: 384 NSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
N+ I+ D + D+VL+D PCSGLG++ K
Sbjct: 301 NN-IKCETLDASVYKKEFNKYADRVLIDVPCSGLGIIRK 338
>gi|222054190|ref|YP_002536552.1| sun protein [Geobacter daltonii FRC-32]
gi|221563479|gb|ACM19451.1| sun protein [Geobacter daltonii FRC-32]
Length = 448
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 176/332 (53%), Gaps = 27/332 (8%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSS-----MEPLLLQILRIGFYEIVKLD 165
D L+T++V G +R + LDH+I + FSS +E +L +LRIG Y++ LD
Sbjct: 41 DRGLLTELVYGVLRRQATLDHII-------RRFSSQRLERLERSVLLLLRIGLYQMFYLD 93
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P A V+E V+LAKV L P A +N +LR +D+ S P ++ A LA
Sbjct: 94 RVPVSAAVNETVKLAKV-LVPRASGFINAVLRNADRERDHISYP-----DREKDPAAYLA 147
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
T+YSHPVW+ W LG +EA L P+ ++R N+ K TR L+ L+ V
Sbjct: 148 TVYSHPVWLAAAWIGQLGLDEAEMLARAMAEPPAITVRTNTLK-TTRQQLMEILSAEGVQ 206
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
E IR+ +V + ++GL VQDES+ L + PQ G+ ++D CAAP
Sbjct: 207 CETGRFSPMAIRINLS-GSVSRLKSFRDGLFFVQDESSQLAAMFLGPQAGERVLDACAAP 265
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL-RTFADNSTV 403
GGK+ +A + +G + A D+ +L++++E A ++S IRT+ D R
Sbjct: 266 GGKSTQLAQLMGDRGEILACDVIGRKLKLVDENAARLGISS-IRTVLLDTARPLKSLERS 324
Query: 404 KCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKS 435
D++LLDAPCSGLGV+ + G W WKS
Sbjct: 325 PLDRILLDAPCSGLGVIRRNPE--GKW--WKS 352
>gi|251797738|ref|YP_003012469.1| sun protein [Paenibacillus sp. JDR-2]
gi|247545364|gb|ACT02383.1| sun protein [Paenibacillus sp. JDR-2]
Length = 491
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 112/315 (35%), Positives = 164/315 (52%), Gaps = 13/315 (4%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D LVT++V GTI+ + LDH + K +EP + Q+LR+ Y+++ LD +P +
Sbjct: 75 DAALVTELVYGTIQRQLTLDHWLGKFA--AKGLRKLEPWVHQLLRMSAYQLLYLDRIPAH 132
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A V+E V +AK G +VNGILR + D N L D+ ++ YS+
Sbjct: 133 AAVNEAVTIAKRRGHQGISGMVNGILRSI----DRNRAELTVDAIADKNPVVQISVRYSY 188
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSL 289
P W+V RW K G E A + N P S+R N + +R +++ L E S
Sbjct: 189 PEWLVERWVKAYGAETAEAICASGNEPPHASVRVNPLRS-SRNEVLSLLTEQGGDAEASR 247
Query: 290 HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 349
I V+ G N+ ++GL +QDES+ LV VV P+ G ++DCCAAPGGKT
Sbjct: 248 LAPAGIVVRRG-GNLADTEGFRDGLWTMQDESSMLVAEVVAPKAGMQVLDCCAAPGGKTT 306
Query: 350 YMASCLSGQGLVYAIDIN-KGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDK 407
+MA +SG+G VYA D++ R I+++ +L N I I D + + D
Sbjct: 307 HMAELMSGKGKVYANDLHPHKRQLIVDQAVRLGLQN--IEAITEDAGKLGERFAPASIDA 364
Query: 408 VLLDAPCSGLGVLSK 422
VLLDAPCSG GV+ +
Sbjct: 365 VLLDAPCSGFGVIRR 379
>gi|399889943|ref|ZP_10775820.1| 16S rRNA methyltransferase B [Clostridium arbusti SL206]
Length = 443
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 103/318 (32%), Positives = 167/318 (52%), Gaps = 13/318 (4%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL- 164
DL+ +D LVT+IV GT++++ +D ++ +K +++ +L ILR Y++ L
Sbjct: 34 DLEAKDKALVTEIVYGTLKYKYTIDKVLSYFI--KKDLKNVDIYILNILRASIYQMKYLT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A V+E V +AK G VNG+LR + KD N + +G D Q +
Sbjct: 92 KIPEFAAVNEAVEMAKKEKGIGPSKFVNGVLRNYIRSKDANFI-----KGEDEIQK--IC 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
YS WM + + G+E A+ +M N P+ S+R N KG + D+ +L +
Sbjct: 145 FDYSFEPWMAKLFINQYGKENAMIIMKGLNEIPNISVRVNPLKG-SYKDIYNELLIHDFN 203
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
E E I + G N+ L EG VQDESA LV +D + +I+D C+AP
Sbjct: 204 VETGYICKESINIIKG-GNIEHNKLFSEGFITVQDESAMLVAPSMDIKENMTILDLCSAP 262
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404
GGKT ++ LS G+V A D++ +L+++ + AK + +++ + D R + D
Sbjct: 263 GGKTTHICEILSNTGVVRAFDLHANKLKLIEKNAKRLGIENLVCS-EMDSRKYDDKYEKT 321
Query: 405 CDKVLLDAPCSGLGVLSK 422
D+VL+D PCSGLG++ K
Sbjct: 322 ADRVLIDVPCSGLGIIKK 339
>gi|428776022|ref|YP_007167809.1| sun protein [Halothece sp. PCC 7418]
gi|428690301|gb|AFZ43595.1| sun protein [Halothece sp. PCC 7418]
Length = 447
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 115/334 (34%), Positives = 169/334 (50%), Gaps = 16/334 (4%)
Query: 94 GYVERTL--GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLL 151
Y E L F L ++ LV+++V G +R +R LD LI K S P L
Sbjct: 22 AYAEVALDRAFSQATLSPQNYGLVSELVYGIVRRQRTLDALIDQFA--SKPASEQPPKLR 79
Query: 152 QILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLL--KDNNSLP 208
IL++GFY++ L +PP A VD +V LAK +VNGILR+ + K+ + L
Sbjct: 80 LILQLGFYQLRYLTQVPPSAAVDTSVELAKSNHLGKLSRVVNGILRQYIRQREKEGDPLH 139
Query: 209 LPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKG 268
LP ND Q L +S P W+++ W G+ A +L +W N P+ LR N K
Sbjct: 140 LP----NDPIQK--LGIQHSFPDWLIQLWCDEFGEATADQLGIWFNQSPNLDLRINPLKT 193
Query: 269 VTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAV 328
A L L + + + +R+ +G+ + Q EG VQD SA LV +
Sbjct: 194 TPEA-LEKALTEANIAYSPLPFVPLGLRLSSGVGKIEQLPGFTEGWWTVQDFSAQLVSYL 252
Query: 329 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 388
+ PQ G++I+D CAAPGGKT ++A + +G ++A D + RL+ + A+ Q+ S I
Sbjct: 253 LSPQAGETIIDACAAPGGKTTHIAELMGDEGKIWACDRAESRLKKVTNNAQRLQLKS-IE 311
Query: 389 TIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
T D R + D+VL+DAPCSGLG L +
Sbjct: 312 TRVGDARELSQFQNT-ADRVLIDAPCSGLGTLHR 344
>gi|392957476|ref|ZP_10322999.1| 16S rRNA methyltransferase B [Bacillus macauensis ZFHKF-1]
gi|391876439|gb|EIT85036.1| 16S rRNA methyltransferase B [Bacillus macauensis ZFHKF-1]
Length = 457
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 108/325 (33%), Positives = 182/325 (56%), Gaps = 23/325 (7%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
+ L+ +D+ L+T++V GT + + LD+ + K +EP +L +LR+ Y+++
Sbjct: 33 SSQLNAKDVGLLTELVYGTTQRKNTLDYYLTPFI--AKGLHKLEPWVLVLLRVSLYQMIF 90
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
LD +P +A+++E V +AK G LVNG+LRK+ +P L R +
Sbjct: 91 LDKIPDHAILNEAVEIAKKRGHKGISGLVNGVLRKV----QRQGVPSLDLV---RDEDER 143
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN--- 279
LA YS P W+++RW G+EEA K+ + + S + R N +KG +R +L +L
Sbjct: 144 LALRYSLPTWLMKRWVAQYGREEAEKMAASSITPSSVTGRVNVQKG-SREELQKRLQTEG 202
Query: 280 LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 339
++ V EL+ E I+++ G ++ Q +G +QDES+ LV + P+ ++I+D
Sbjct: 203 VMTVEGELA---PEAIQLEKG--SLSQTQSFSQGYVTIQDESSMLVARGLGPKESETILD 257
Query: 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK-LHQVNSVIRTIHADLRTFA 398
CAAPGGKT ++A L+ G V A+D++K +++++ E AK LH N I T D R
Sbjct: 258 ACAAPGGKTTHIAELLNNSGSVVALDLHKHKVKLIEEQAKRLHLTN--IETKAMDSRKAP 315
Query: 399 DN-STVKCDKVLLDAPCSGLGVLSK 422
++ D++L+DAPC+G GV+ K
Sbjct: 316 EHFPPASFDRILVDAPCTGFGVIRK 340
>gi|310828894|ref|YP_003961251.1| hypothetical protein [Eubacterium limosum KIST612]
gi|308740628|gb|ADO38288.1| hypothetical protein ELI_3326 [Eubacterium limosum KIST612]
Length = 441
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 122/371 (32%), Positives = 193/371 (52%), Gaps = 38/371 (10%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R + L+R+ GA+++L KK G E Y E +DR L L +IV
Sbjct: 4 REQAVKTLLRVSREGAYSNLETKKVLG----ENHYKE----------EDRGLYL--NIVY 47
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GT++ + YLD+L L H K + ++P +L+ILRI Y+I LD +P YA V+E+V +
Sbjct: 48 GTLQNKLYLDYL--LKKHISKDLNKLDPEVLEILRIAVYQIYFLDKIPSYAAVNESVEIT 105
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
++P A VNG+LR ++ K+ + N++ AL+ YS PVW++ ++ +
Sbjct: 106 G-RIKPKARGFVNGVLRNILRSKETDEAFDFSSFSNEK---EALSVRYSIPVWIIHKYYE 161
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHEL------SLHLDE 293
G E+A K++ N P F++RAN+ K V R L +L+ + E +LHL
Sbjct: 162 TFGAEKAEKIIPLLNEKPPFTIRANTLK-VDRNTLEEKLSDKGIYCEKGALDCDALHLSH 220
Query: 294 FIRVKTGLQNVIQAG-LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMA 352
G +N +Q L G +QD+ A ++ P+ ++D CAAPGGKT +++
Sbjct: 221 L----GGFENQVQCDPLFTAGCFMIQDQGAMKAARLLGPEKTDRVLDMCAAPGGKTTHLS 276
Query: 353 SCLSGQGLVYAIDINKGRLRILNET-AKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411
+ +G + A DI RL+++ ET A+L N I T D F D++LLD
Sbjct: 277 QIMENEGTIIARDIFDSRLKLIEETAARLGICN--IETEKTDGCIFRPEDREAFDRILLD 334
Query: 412 APCSGLGVLSK 422
APCSGLG++ +
Sbjct: 335 APCSGLGIIRR 345
>gi|260887300|ref|ZP_05898563.1| ribosomal RNA small subunit methyltransferase B [Selenomonas
sputigena ATCC 35185]
gi|330838946|ref|YP_004413526.1| sun protein [Selenomonas sputigena ATCC 35185]
gi|260862936|gb|EEX77436.1| ribosomal RNA small subunit methyltransferase B [Selenomonas
sputigena ATCC 35185]
gi|329746710|gb|AEC00067.1| sun protein [Selenomonas sputigena ATCC 35185]
Length = 443
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 108/331 (32%), Positives = 172/331 (51%), Gaps = 29/331 (8%)
Query: 102 FRTKDLDDRDLRLVTDIV------GGTIRW--RRYLDHLICLLCHDEKTFSSMEPLLLQI 153
R L + D R T++ GGT+ W RRYL+ + S + P++ I
Sbjct: 30 LRAAKLSEVDRRFATELAYGAAKAGGTLDWILRRYLN----------RPLSKIPPMVRDI 79
Query: 154 LRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL 212
LR+G Y++ L +P A + V + K G VN +LR + + P K
Sbjct: 80 LRLGIYQLFFLARVPASAACNTAVEMTKRCSHAGTVKFVNAVLRTAAREPEKAAFPTGKA 139
Query: 213 EGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA 272
+A LA HP W+VRRW + G EEA L ++N+ + SLR N+ K +TR
Sbjct: 140 H-----EAENLALSLQHPEWLVRRWIEQFGYEEARALCEFDNAQATLSLRTNTLK-ITRD 193
Query: 273 DLVMQLNLLKVPHELSLHLDEFI-RVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
L+ +L+ V E S E I ++ G + +++ L++GL VQDES+ LV V+ P
Sbjct: 194 KLLERLSKEGVEAEPSAWTPEGILFLRHGSLDALES--LQQGLFQVQDESSMLVAHVLAP 251
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
+PG+ ++D C+APGGKT ++A+ + G + A+D+++ ++R + E + + SV +
Sbjct: 252 EPGEFVLDVCSAPGGKTTHIAASMGDCGRIVALDVHEHKMRRIAENCERLGIKSV-EPLL 310
Query: 392 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
D R + D+VL+DAPCSGLGVL +
Sbjct: 311 LDAREAGRRFPRQADRVLVDAPCSGLGVLRR 341
>gi|255101745|ref|ZP_05330722.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile QCD-63q42]
Length = 441
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/325 (31%), Positives = 176/325 (54%), Gaps = 23/325 (7%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F+ ++ D D L T+++ G I + YLD++I L + M + LR+G Y+I
Sbjct: 29 FKNLEISDMDRGLATELIYGVIENKYYLDYIINKLS--KIKVKKMSTYVKIFLRMGTYQI 86
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD + YA V+E V+L+K + +G +N ILR + K+ ++ +
Sbjct: 87 LFLDSISDYAAVNETVKLSKKYDKKSSG-FINAILRNEIRAKE------TIMDITEEDSV 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN- 279
+ L+ YS+ W+++ W GQE A L+ NN PS +R N+ K ++R +L+ +L+
Sbjct: 140 KYLSIKYSYNSWIIKNWIDKFGQEFAEDLLEANNEKPSIYIRTNTLK-ISREELIEKLSE 198
Query: 280 ----LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
LKVP ++E I+V+ ++N+ + L K GL +QD S+ +V V++P+ G
Sbjct: 199 MGIVCLKVPM-----VEEAIKVEK-MKNIEKNELFKAGLFTIQDISSMIVGKVINPKEGS 252
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
I+D C+APGGK+ ++A+ ++ G V A DI + +L+++N T + +V D
Sbjct: 253 FILDVCSAPGGKSTHLATLMNNTGQVVARDIFEHKLKLINSTVNRLGLKNVFVE-RFDAS 311
Query: 396 TFADNSTVKCDKVLLDAPCSGLGVL 420
+NS K D VL D PCSG G++
Sbjct: 312 EIDENSISKFDYVLADVPCSGFGII 336
>gi|326203177|ref|ZP_08193043.1| sun protein [Clostridium papyrosolvens DSM 2782]
gi|325986823|gb|EGD47653.1| sun protein [Clostridium papyrosolvens DSM 2782]
Length = 467
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/314 (30%), Positives = 171/314 (54%), Gaps = 14/314 (4%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D T++V GT++W +D++I + + P + +LR+G Y+++ D +P
Sbjct: 59 DRSFATELVYGTVKWLLQIDYIIG--KYSSVKLKKLSPWIKNVLRLGVYQLLHTDRIPVS 116
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ-ARALATIYS 228
A + V LAK + VN +LR + K+ +++P P D++ A L+ YS
Sbjct: 117 AACNTAVELAKRYGHQASSRFVNAVLRNIS--KNIDNIPYP-----DKSDIASYLSIFYS 169
Query: 229 HPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELS 288
HPVWMV++W + G+E +L+ NN P F +R N+ K R L+ L+ + E
Sbjct: 170 HPVWMVQKWIELYGKEFTEELLKSNNQVPDFIIRTNTLK-TDRQTLLDLLHKEGINAEPG 228
Query: 289 LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKT 348
+++E + +K ++ K+G VQDES+ L ++DP+ G++++D C+APGGK
Sbjct: 229 RYIEEAVILKNP-SSISNLETFKKGYFQVQDESSMLAGKILDPKEGETVIDVCSAPGGKA 287
Query: 349 LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKV 408
++A ++ G V A DI + +L ++ ++ + ++ + IH D +N K D+V
Sbjct: 288 THIAQIMNNNGTVLARDIYEHKLNLIEQSCRRLGIDIIKTEIH-DACDIDENLIGKADRV 346
Query: 409 LLDAPCSGLGVLSK 422
L+DAPCSGLG++ K
Sbjct: 347 LIDAPCSGLGIIRK 360
>gi|427719814|ref|YP_007067808.1| sun protein [Calothrix sp. PCC 7507]
gi|427352250|gb|AFY34974.1| sun protein [Calothrix sp. PCC 7507]
Length = 451
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 120/371 (32%), Positives = 188/371 (50%), Gaps = 41/371 (11%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L +Q GA+AD+ ++R+L + +L +D RL T++V
Sbjct: 5 RQIAFIALREVQ-KGAYADVA--------------LDRSL--QKVNLSPQDRRLATELVY 47
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI-VKLDMPPYAVVDENVRLA 179
G++R +R LD LI L K P L IL +G Y++ + +PP A V+ V LA
Sbjct: 48 GSVRRQRTLDALIDQLA--TKKSHQQPPDLRAILHLGLYQLRYQERIPPSAAVNTTVELA 105
Query: 180 KVALRPGAGNLVNGILRKLVLLKD----NNSLPLPKLEGNDRAQARALATIYSHPVWMVR 235
K G VNG+LR+ + L + ++ L LP+ L ++S P W+++
Sbjct: 106 KENGFSGLTGFVNGLLRQYIRLVEERGGDDCLKLPE------NPVERLGILHSFPDWIIQ 159
Query: 236 RWTKYLGQEEAIKLMVWNNSDPSFSLRANS-RKGVTRADLVMQ---LNLLKVPHELSLHL 291
W + LG + +L VW N P+ LR N R + ++ +Q + + ++P+ L
Sbjct: 160 VWLEQLGFAQTEQLCVWMNRSPTIDLRINPLRTSLEAVEMALQAADVFVKRIPY-----L 214
Query: 292 DEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYM 351
+ +R+ + +EG VQD SA LV ++DPQPG+ ++D CAAPGGKT ++
Sbjct: 215 PQALRLIGSSGPIPNLPGFQEGWWTVQDSSAQLVSHLLDPQPGEVVIDVCAAPGGKTTHI 274
Query: 352 ASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411
A + G V+A D RLR L E ++ + S I D R F+ V D+VLLD
Sbjct: 275 AELMGDSGKVWACDRTASRLRKLQENSRRLNLQS-IEICTGDSRHFSQFYNVG-DRVLLD 332
Query: 412 APCSGLGVLSK 422
APCSGLG L +
Sbjct: 333 APCSGLGTLHR 343
>gi|147678123|ref|YP_001212338.1| tRNA and rRNA cytosine-C5-methylases [Pelotomaculum
thermopropionicum SI]
gi|146274220|dbj|BAF59969.1| tRNA and rRNA cytosine-C5-methylases [Pelotomaculum
thermopropionicum SI]
Length = 456
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 104/316 (32%), Positives = 163/316 (51%), Gaps = 17/316 (5%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D T++ GT+R LD ++ ++ SS +L ILR+G Y+++ +D +PP
Sbjct: 44 DRAFATELAYGTLRSLNTLDWVLEQFI--KQPLSSQSRTVLNILRLGVYQLMFMDRVPPS 101
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
AV +E LA+ G VNG+LR + + N + P LE + + ++ YSH
Sbjct: 102 AVCNEGAELARKYGHAGTVKFVNGVLRNIS--RRLNEISFPALEDDP---VKHISLRYSH 156
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSL 289
PVWMV+RW K G + + L NN ++R N+ K +TR L +L L++
Sbjct: 157 PVWMVKRWLKEFGLDHTVALCRANNGPAPNTVRTNTLK-ITRDGLAERLR----NEGLTV 211
Query: 290 HLDEFIRVKTGLQNVIQAGLL---KEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 346
EF + G L KEGL +QDES+ L + P PG ++D C+APGG
Sbjct: 212 SETEFAPEGLKIDGFFSIGSLQSFKEGLFQIQDESSMLAGRALMPAPGAFVIDACSAPGG 271
Query: 347 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 406
KT ++A + +G + A+DI+ +L ++ E +N ++ + D R +N K D
Sbjct: 272 KTTHLAQLMENRGRILAVDIHPHKLVLIKENCSRLGIN-IVEGLAGDARELPENLYNKAD 330
Query: 407 KVLLDAPCSGLGVLSK 422
+L+DAPCSGLGVL +
Sbjct: 331 FILVDAPCSGLGVLRR 346
>gi|366166732|ref|ZP_09466487.1| 16S rRNA methyltransferase B [Acetivibrio cellulolyticus CD2]
Length = 450
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/319 (31%), Positives = 169/319 (52%), Gaps = 11/319 (3%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K L D +T++V GT++WR +D++I + + + P +L ILR+G Y+IV +
Sbjct: 35 KALSGLDKAFITELVYGTLKWRLSIDYIIDQFSSVK--INKLSPWILNILRLGVYQIVYM 92
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
+P A +E+V LAK + VN +LR + + N + P ++ L
Sbjct: 93 SKIPESAACNESVNLAKRYGHSASSRYVNAMLRNVA--RSKNKIVYP---DRNKDLISYL 147
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
+ YSHP WMV++W G+ +L+ NN ++R NS K TR +L L
Sbjct: 148 SIKYSHPDWMVKKWLDRFGESFTEELLKSNNETAPLTVRVNSLK-TTREELENTLKKEGF 206
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
E + +++ + + +K G VQDES+ +V + DP+PG+ IVD C+A
Sbjct: 207 ETESAKYIENALTINNPSSLTKMEAFVK-GFFQVQDESSMMVGRIFDPKPGEFIVDVCSA 265
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403
PGGKT ++A + +G + A DI++ ++R++NE + ++ +I+ D + T
Sbjct: 266 PGGKTTHIAELMGNRGQIIARDIHEHKIRLINEASSRLGID-IIKAEIFDASEQDASLTD 324
Query: 404 KCDKVLLDAPCSGLGVLSK 422
K D+VL+DAPC+GLG++ +
Sbjct: 325 KADRVLVDAPCTGLGIIRR 343
>gi|75910625|ref|YP_324921.1| rRNA SAM-dependent methyltransferase [Anabaena variabilis ATCC
29413]
gi|75704350|gb|ABA24026.1| Fmu, rRNA SAM-dependent methyltransferase [Anabaena variabilis ATCC
29413]
Length = 449
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 114/326 (34%), Positives = 168/326 (51%), Gaps = 16/326 (4%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQ-ILRIGFY 159
+ +L D D RLVT+++ G++R +R LD +I L K S +P L+ IL +G Y
Sbjct: 28 ALQKANLSDIDRRLVTELLYGSVRRQRTLDFIIDQLA---KKKSHQQPTELRSILHLGLY 84
Query: 160 EI-VKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS--LPLPKLEGND 216
++ + +P A V+ V LAK G VNG+LR+ + L + + L LP+
Sbjct: 85 QLRYQERIPASAAVNTTVELAKDNGFAGLTGFVNGLLRQYIRLAEASPDFLELPE----- 139
Query: 217 RAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM 276
L ++S P W+++ W + LG E KL W N P+ LR N + + A++
Sbjct: 140 -NPVERLGILHSFPDWIIKVWLEQLGLTETEKLCEWMNQTPTLDLRVNPLR-TSVAEVET 197
Query: 277 QLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 336
L V HL + +R+ ++ + +G VQD SA LV ++DPQPG+
Sbjct: 198 ALKSAGVLARPIPHLPQALRLIGNTGSIQKLPGFSQGWWVVQDASAQLVSHLLDPQPGEV 257
Query: 337 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396
I+D CAAPGGKT ++A + QG V+A D RLR L E A+ ++S I D R
Sbjct: 258 IIDACAAPGGKTTHIAELMKDQGKVWAGDRTASRLRKLKENAQRLNLHS-IEICTGDSRN 316
Query: 397 FADNSTVKCDKVLLDAPCSGLGVLSK 422
V D+VLLDAPCSGLG L +
Sbjct: 317 LPQFYNV-ADRVLLDAPCSGLGTLHR 341
>gi|89895438|ref|YP_518925.1| hypothetical protein DSY2692 [Desulfitobacterium hafniense Y51]
gi|89334886|dbj|BAE84481.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 453
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 119/364 (32%), Positives = 186/364 (51%), Gaps = 31/364 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDD-RDLRLVTDIV 119
RA++ L RI+ A+A+L+ +K DL D R+ +L T +V
Sbjct: 7 RALAVQILQRIEEEKAYANLVMQKS------------------LHDLSDPRERQLTTLLV 48
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAV-VDENVRL 178
GT++ R LD+ L H K S + + ILRI +++ L P AV ++E V L
Sbjct: 49 NGTLKHRLTLDY--ALRRHLRKPLSQLPREVRWILRISALQVLYLSRIPAAVAINEGVEL 106
Query: 179 AKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWT 238
K + +LVN +LR++ L+ + P ++ R L+ YSHP WMV+RW
Sbjct: 107 TK-KQQGKYTSLVNSVLRRV--LETGWEMLWP---SQEKEPVRYLSLRYSHPEWMVKRWL 160
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVK 298
K G + L NN +R N+ K ++RADL +L V + + E + ++
Sbjct: 161 KRYGMADTEALCQANNEPAPVWIRTNTLK-ISRADLQARLEEEGVKVTIGERVPESLMIE 219
Query: 299 TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 358
++ Q +EGL VQDES+ L+ V++PQ GQ ++D C APGGKT ++A + Q
Sbjct: 220 E-FGSLDQLPSFQEGLFTVQDESSQLIAHVLNPQAGQKVLDACGAPGGKTTHLAQRMENQ 278
Query: 359 GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLG 418
G + A DI+ +++++ + A + ++IR D R A C KVL+DAPCSGLG
Sbjct: 279 GEILAFDIHPHKVKLIEDLAARLGI-TIIRAQAGDARELAGVKDASCHKVLVDAPCSGLG 337
Query: 419 VLSK 422
VL +
Sbjct: 338 VLRR 341
>gi|421873665|ref|ZP_16305277.1| ribosomal RNA small subunit methyltransferase B [Brevibacillus
laterosporus GI-9]
gi|372457452|emb|CCF14826.1| ribosomal RNA small subunit methyltransferase B [Brevibacillus
laterosporus GI-9]
Length = 436
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 111/352 (31%), Positives = 181/352 (51%), Gaps = 26/352 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D+ LVT++V GTI+ R LD +I + ++ +LQ+LR+ Y++ LD
Sbjct: 23 LSKADVGLVTELVYGTIQRRMTLDEVIGQFV--KGGTKKLQGWVLQLLRMSLYQVRFLDR 80
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A V E V +AK G +LVNG+LR +L + + LPK + +A
Sbjct: 81 VPDRAAVHEAVEIAKKRGHKGISSLVNGVLRN-ILRQPESWEKLPK------GITKQIAV 133
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHP W+V+RW K G+E + NN P S+R N + T AD ++Q P
Sbjct: 134 TESHPEWLVKRWVKQYGEETTRAICHSNNQSPMPSIRVNRLR--TTADALLQEMKEAFPE 191
Query: 286 ELSLHLD-EFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
L + + +++G + + +EG C +QDES+ LV + P ++D CAAP
Sbjct: 192 AAKSELTPDALLLQSG--HAAGSSWFQEGFCTIQDESSMLVAPALHLTPNLRVLDACAAP 249
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404
GGKT ++A + QG + A D++ + ++ + AK + ++I T+ AD D + +
Sbjct: 250 GGKTTHIAELMGNQGEILACDVHPHKRELIEQNAKRLGI-TIITTMVADAADLLDRNVGE 308
Query: 405 CDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
D++LLDAPCSG GV+ + L++ KT+ ++ + E +Y LL
Sbjct: 309 FDRILLDAPCSGFGVIRRK----------PDLKWNKTAEDIKAISEIQYDLL 350
>gi|56750589|ref|YP_171290.1| sun protein [Synechococcus elongatus PCC 6301]
gi|56685548|dbj|BAD78770.1| sun protein [Synechococcus elongatus PCC 6301]
Length = 405
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 113/319 (35%), Positives = 170/319 (53%), Gaps = 17/319 (5%)
Query: 115 VTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVD 173
+T++V G +R +R LD LI LL ++ + P+L +L++G Y++ L+ +P A V
Sbjct: 1 MTELVYGCVRRQRTLDALIDLLA--QRPAAQQPPVLRTVLQLGLYQLRYLEQIPTAAAVA 58
Query: 174 ENVRLAKVALRPGAGNLVNGILRK-LVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVW 232
E V+LAK G VN ILR+ L ++ + LPLP ALA S P W
Sbjct: 59 ETVQLAKQLGLGGLSGAVNAILRQYLRQSEERDPLPLPS------DPIAALAIHQSFPDW 112
Query: 233 MVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLD 292
+V+ W+ LG +EA L W N PS LR N + R+ + L + + L
Sbjct: 113 LVQLWSDRLGLDEAEFLCHWFNQPPSNDLRINPLR-TERSQVQAALEAVGIRSTPDPQLP 171
Query: 293 EFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMA 352
+ +R+ + Q EG VQD SA L+ +VDPQPG++++D CAAPGGK+ ++A
Sbjct: 172 QALRLIDPPGPIRQLPGFDEGWWMVQDSSAQLIAHLVDPQPGETVLDVCAAPGGKSTHLA 231
Query: 353 SCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 412
+ +G V A D + RLR + E A+ Q++S I T D R ++ D++L+DA
Sbjct: 232 ELMGDRGQVIACDSSAKRLRKVQENAQRLQLSS-ITTRAIDGRQI---KGIQADRILVDA 287
Query: 413 PCSGLGVLSKTCVGIGDWR 431
PCSGLG+L + G WR
Sbjct: 288 PCSGLGILHRH--ADGRWR 304
>gi|254976172|ref|ZP_05272644.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile QCD-66c26]
gi|255315305|ref|ZP_05356888.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile QCD-76w55]
gi|255517973|ref|ZP_05385649.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile QCD-97b34]
gi|255651089|ref|ZP_05397991.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile QCD-37x79]
gi|260684154|ref|YP_003215439.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile CD196]
gi|260687813|ref|YP_003218947.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile R20291]
gi|306520940|ref|ZP_07407287.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile QCD-32g58]
gi|384361796|ref|YP_006199648.1| 16S rRNA methyltransferase B [Clostridium difficile BI1]
gi|423092611|ref|ZP_17080415.1| ribosomal RNA small subunit methyltransferase B [Clostridium
difficile 70-100-2010]
gi|260210317|emb|CBA64638.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile CD196]
gi|260213830|emb|CBE05814.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile R20291]
gi|357553481|gb|EHJ35228.1| ribosomal RNA small subunit methyltransferase B [Clostridium
difficile 70-100-2010]
Length = 441
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 102/325 (31%), Positives = 176/325 (54%), Gaps = 23/325 (7%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F+ ++ D D L T+++ G I + YLD++I L + M + LR+G Y+I
Sbjct: 29 FKNLEISDMDRGLATELIYGVIENKYYLDYIINKLS--KIKVKKMSTYVKIFLRMGTYQI 86
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD + YA V+E V+L+K + +G +N ILR + K+ ++ +
Sbjct: 87 LFLDSISDYAAVNETVKLSKKYDKKSSG-FINAILRNEIRAKE------TIMDITEEDSV 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN- 279
+ L+ YS+ W+++ W GQE A L+ NN PS +R N+ K ++R +L+ +L+
Sbjct: 140 KYLSIKYSYNSWIIKNWIDKFGQEFAEDLLEANNEKPSIYIRTNTLK-ISREELIEKLSE 198
Query: 280 ----LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
LKVP ++E I+V+ ++N+ + L K GL +QD S+ +V V++P+ G
Sbjct: 199 MGIVCLKVPM-----VEEAIKVEK-MKNIEKNELFKAGLFTIQDISSMIVGKVINPKEGS 252
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
++D C+APGGK+ ++A+ ++ G V A DI + +L+++N T + +V D
Sbjct: 253 FVLDVCSAPGGKSTHLATLMNNTGQVVARDIFEHKLKLINSTVNRLGLKNVFVE-RFDAS 311
Query: 396 TFADNSTVKCDKVLLDAPCSGLGVL 420
+NS K D VL D PCSG G++
Sbjct: 312 EIDENSISKFDYVLADVPCSGFGII 336
>gi|411120538|ref|ZP_11392910.1| ribosomal RNA small subunit methyltransferase RsmB [Oscillatoriales
cyanobacterium JSC-12]
gi|410709207|gb|EKQ66722.1| ribosomal RNA small subunit methyltransferase RsmB [Oscillatoriales
cyanobacterium JSC-12]
Length = 451
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 131/369 (35%), Positives = 184/369 (49%), Gaps = 43/369 (11%)
Query: 62 AVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGG 121
A+SA+R ++ GAFAD++ DN + V L+ D RL+T++V G
Sbjct: 9 ALSALREIQ---RGAFADVVL-------DNLLQQVR---------LNSPDKRLLTELVYG 49
Query: 122 TIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAK 180
IR +R LD LI L +K P L +IL +G Y++ L +P A V+ V LAK
Sbjct: 50 IIRQQRTLDALIDQL--GKKRSHQQPPDLRRILHLGLYQLRYLTHIPVSAAVNTTVELAK 107
Query: 181 VALRPGAGNLVNGILRKLVLLKDN--NSLPLPKLEGNDRAQARALATIYSHPVWMVRRWT 238
+ G +VNG+LR+ L + + L LP + L +YS+P W+V W
Sbjct: 108 KSGFAGLSGVVNGLLRQYDRLAASAIDPLILPS------HPTQHLGILYSYPDWIVDIWL 161
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKG-VTRADLVMQLNLLKV----PHELSLHLDE 293
+ G E +L W N PS LR N K V + MQ +KV P +L L E
Sbjct: 162 QQFGWSETEQLCRWLNQPPSIDLRVNRLKTTVENVEAAMQTAGVKVVRVPPLPYALRLVE 221
Query: 294 FIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMAS 353
+ L ++G VQD SA LV ++DPQPG+ ++D CAAPGGKT ++A
Sbjct: 222 HVGRIQDLPG------FQDGWWVVQDCSAQLVSYLLDPQPGEVVIDACAAPGGKTTHIAE 275
Query: 354 CLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 413
++ QG V+A D RL+ L + Q+ S IR H D R + D+VLLDAP
Sbjct: 276 LMNDQGTVWACDKTSSRLKKLEQNCDRLQLQS-IRIHHGDSRVLPRFNQ-PADRVLLDAP 333
Query: 414 CSGLGVLSK 422
CSGLG L +
Sbjct: 334 CSGLGTLHR 342
>gi|126700200|ref|YP_001089097.1| 16S rRNA methyltransferase B [Clostridium difficile 630]
gi|115251637|emb|CAJ69470.1| Ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Clostridium
difficile 630]
Length = 441
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 102/325 (31%), Positives = 176/325 (54%), Gaps = 23/325 (7%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F+ ++ D D L T+++ G I + YLD++I L + M + LR+G Y+I
Sbjct: 29 FKNLEISDMDRGLATELIYGVIENKYYLDYIINKLS--KIKVKKMSTYVKIFLRMGTYQI 86
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD + YA V+E V+L+K + +G +N ILR + K+ ++ +
Sbjct: 87 LFLDSISDYAAVNETVKLSKKYDKKSSG-FINAILRNEIRAKE------TIMDITEEDSV 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN- 279
+ L+ YS+ W+++ W GQE A L+ NN PS +R N+ K ++R +L+ +L+
Sbjct: 140 KYLSIKYSYNSWIIKNWIDKFGQEFAEDLLEANNEKPSIYIRTNTLK-ISREELIEKLSE 198
Query: 280 ----LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
LKVP ++E I+V+ ++N+ + L K GL +QD S+ +V V++P+ G
Sbjct: 199 MGIVCLKVPM-----VEEAIKVEK-MKNIEKNELFKAGLFTIQDISSMIVGKVINPKEGS 252
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
++D C+APGGK+ ++A+ ++ G V A DI + +L+++N T + +V D
Sbjct: 253 FVLDVCSAPGGKSTHLATLMNNTGQVVARDIFEHKLKLINSTVNRLGLKNVFVE-RFDAS 311
Query: 396 TFADNSTVKCDKVLLDAPCSGLGVL 420
+NS K D VL D PCSG G++
Sbjct: 312 EIDENSISKFDYVLADVPCSGFGII 336
>gi|158338705|ref|YP_001519882.1| ribosomal RNA small subunit methyltransferase B [Acaryochloris
marina MBIC11017]
gi|158308946|gb|ABW30563.1| ribosomal RNA small subunit methyltransferase B [Acaryochloris
marina MBIC11017]
Length = 443
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 114/319 (35%), Positives = 163/319 (51%), Gaps = 10/319 (3%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K + D D RL+T+++ G++R +R LD LI +K P L +L +G Y++ L
Sbjct: 32 KTIADADRRLLTELLYGSVRRQRTLDALIDQFA--KKPAHQQPPDLRTLLHLGLYQLRFL 89
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
D +P A + V LAK G VNG+LR+ N + PL +L + + L
Sbjct: 90 DHIPDAAAIFTTVELAKQNQLSGLSGFVNGLLRQYARAAANLNDPL-ELPPDP---IQHL 145
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
+YS+P W+V+ W LG EE KL + N P LR NS K R + QL V
Sbjct: 146 GILYSYPDWIVQVWHDQLGSEETEKLCDYCNQPPHIDLRINSLK-TDRESVRSQLASAGV 204
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
HL + +R++ + Q +EGL VQ+ SA LV +++PQPG +D CAA
Sbjct: 205 TTTPLPHLPQALRIEGKSGPIPQLPGFQEGLWTVQEASAQLVGHLLNPQPGAIALDVCAA 264
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403
PGGKT ++A + QG V+A D RLR LN+ + +++V TI N
Sbjct: 265 PGGKTTHIAELMENQGEVWACDRTPSRLRKLNQNTQRLGIDTV--TIWTGDSRQLSNHIP 322
Query: 404 KCDKVLLDAPCSGLGVLSK 422
D VL+DAPCSGLG L +
Sbjct: 323 LADYVLVDAPCSGLGTLHR 341
>gi|434398098|ref|YP_007132102.1| sun protein [Stanieria cyanosphaera PCC 7437]
gi|428269195|gb|AFZ35136.1| sun protein [Stanieria cyanosphaera PCC 7437]
Length = 453
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 122/331 (36%), Positives = 177/331 (53%), Gaps = 30/331 (9%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
+ +L + L ++V G +R +R LD LI LL +K P L IL++G Y++
Sbjct: 36 SPELSSVEKSLTCELVYGIVRRQRTLDSLINLL--GKKKAQQQPPNLRIILQMGLYQLRY 93
Query: 164 LD-MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
LD +P A V+ +V LAK L+ AG +VNG+LR+ L + N PL +L N +
Sbjct: 94 LDHIPVSAAVNTSVELAKQNGLKKLAG-VVNGLLREY-LRQATNCDPL-ELPNNPVTK-- 148
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN----SRKGVTRADLVMQ 277
+ YS P W+V + + L E +L W N LR N S + V +A L
Sbjct: 149 -IGIKYSFPDWIVETFLQQLPASEVEQLCGWFNQPAQIDLRINLLKTSLETVEKAFLDQG 207
Query: 278 LNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 337
+ ++VPH L + +R+ + Q + G VQD SA LV ++DPQPG++I
Sbjct: 208 ITTVRVPH-----LSQTLRLTNSAGKINQLPGYEAGWWMVQDSSAQLVTHLLDPQPGETI 262
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397
VD CAAPGGKT ++A + QG++YA D+++ RL + E A+ Q+ S I+ D R
Sbjct: 263 VDACAAPGGKTTHIAELIKDQGVIYACDLSEKRLNKVQENAQRLQLKS-IKICPGDSR-- 319
Query: 398 ADNSTVKC------DKVLLDAPCSGLGVLSK 422
N TV+C D+VLLDAPCSGLG L K
Sbjct: 320 --NRTVQCNSKFLVDRVLLDAPCSGLGTLHK 348
>gi|379012011|ref|YP_005269823.1| ribosomal RNA small subunit methyltransferase B [Acetobacterium
woodii DSM 1030]
gi|375302800|gb|AFA48934.1| ribosomal RNA small subunit methyltransferase B [Acetobacterium
woodii DSM 1030]
Length = 441
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 101/358 (28%), Positives = 189/358 (52%), Gaps = 25/358 (6%)
Query: 68 LMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRR 127
L+++ + GA+++L E+ V + + L D D RL ++V G ++ +
Sbjct: 11 LLKVNYEGAYSNL-----------EIKSV-----LKNRFLKDEDRRLYLNLVYGCLQNQT 54
Query: 128 YLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPG 186
YLD++I + + + + +ILRI Y+I LD +P YA+V+E+V LA +P
Sbjct: 55 YLDYIIKQ--QSNRPVNKLHKEVSEILRIAIYQIYFLDKIPNYAIVNESVNLAN-EFQPQ 111
Query: 187 AGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEA 246
A +NG++R ++ + + K E D + ALA YS P+W+V ++ + G ++A
Sbjct: 112 AKGFINGVIRNIIRKTEKDGKDF-KFENWDN-EKEALAIRYSVPLWIVHKYYEIFGVKDA 169
Query: 247 IKLMVWNNSDPSFSLRANSRKGVTRADL--VMQLNLLKVPHELSLHLDEFIRVKTGLQNV 304
++ N P F++R N+ K + + + + V + S + + + N+
Sbjct: 170 EAIIPMLNEKPPFTIRCNTMKTTVDQLIKSIEKFGVEAVRGKYSSNAIQLANLGIFESNI 229
Query: 305 IQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAI 364
+ L +EG +QD++A + V +DP+PGQ ++D CAAPGGKT Y++ ++ +G + A
Sbjct: 230 EEDSLYREGQFLIQDQAAMITVERLDPKPGQRVLDMCAAPGGKTTYLSQLMNNEGEIIAR 289
Query: 365 DINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
D+ RL+++ + + ++I D F ++ DK+L+DAPC+GLGV+ +
Sbjct: 290 DVFPHRLKLIKQQLRRLGCTNIILE-DQDGTVFINDDQATFDKILVDAPCTGLGVIRR 346
>gi|332981565|ref|YP_004463006.1| sun protein [Mahella australiensis 50-1 BON]
gi|332699243|gb|AEE96184.1| sun protein [Mahella australiensis 50-1 BON]
Length = 447
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 108/316 (34%), Positives = 164/316 (51%), Gaps = 24/316 (7%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFS---SMEPLLLQILRIGFYEIVKLD-M 166
D +TD+V G R+R LD LI K +S P + ILR+G Y+I+ +D +
Sbjct: 40 DRAFITDMVYGVTRYRLTLDWLI-------KRYSRGGKASPWIRNILRMGMYQILYMDRV 92
Query: 167 PPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI 226
P +A D +V LAK VN +LR+L+ KD+ L L D AL
Sbjct: 93 PDFAACDSSVELAKKYAGQREAGYVNAVLRRLIQEKDH----LVSLFPQDTVSRIALK-- 146
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHE 286
YS P WMVR W + + +L N PS ++RAN K +++ DL+ L + +
Sbjct: 147 YSFPEWMVRLWLNTMSETSVEELCAAQNIRPSLTIRANELK-ISQDDLIKLLEQRSIMYS 205
Query: 287 LSLHLDEFIRVKTGLQNVIQAGL--LKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
++L E + ++ QNV L +GL AVQDE++ +V VVDP+PGQ I+D C+AP
Sbjct: 206 CGVYLPEALNIE---QNVDVESLPGYDDGLFAVQDEASMMVAHVVDPRPGQIIIDACSAP 262
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404
GGK ++MA + QG + ++D+ R+ ++ VN V + D + ++
Sbjct: 263 GGKAVHMAQFMKDQGRILSVDVYPHRIELIKAQCARLGVNCV-EPVCYDSTIYNEDWYGV 321
Query: 405 CDKVLLDAPCSGLGVL 420
D VL+DAPCS LG++
Sbjct: 322 ADAVLIDAPCSALGII 337
>gi|425450552|ref|ZP_18830377.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 7941]
gi|389768554|emb|CCI06369.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 7941]
Length = 446
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 120/338 (35%), Positives = 169/338 (50%), Gaps = 17/338 (5%)
Query: 90 DNEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
D Y +R L L+ D L T+IV GT+R +R LD L+ L +KT +
Sbjct: 16 DRSSAYPDRALDRHLSASSLNCLDKALTTEIVYGTMRRQRTLDALLDRL--GKKTAAQQP 73
Query: 148 PLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
P L +IL IG Y++ L +PP A V+ V L K++ +VNG+LR+ + L N
Sbjct: 74 PDLRRILHIGLYQLRYLSQIPPSAAVNTAVELTKISHLGKLAAVVNGMLRQYLRLTANGD 133
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
PL E A L ++S P W+V+ W E +L W N P +R N
Sbjct: 134 DPLILPENT----ASRLGILHSFPDWLVQLWLDRFSVTETEQLCQWFNRSPDLDIRINPL 189
Query: 267 KGVTRADLVMQLNLLKVP-HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLV 325
K +R L +L + H L L L R+ +GL N+ + + G +QD SA LV
Sbjct: 190 K-TSREALENELESANITFHHLKLPL--ACRLTSGLGNIERLEGFRAGNYTLQDISAQLV 246
Query: 326 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385
++DPQPG++I+D CAAPGGKT ++A + QG + A D RLR L K + +
Sbjct: 247 TYLLDPQPGETIIDACAAPGGKTTHIAELMGDQGRILACDQTASRLRQLEANIKRLDLKA 306
Query: 386 VIRTIH-ADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
+ IH D R + D+VL+DAPCSGLG L K
Sbjct: 307 I--EIHLGDSRDRPQWCGI-ADRVLIDAPCSGLGTLHK 341
>gi|312898700|ref|ZP_07758090.1| ribosomal RNA small subunit methyltransferase B [Megasphaera
micronuciformis F0359]
gi|310620619|gb|EFQ04189.1| ribosomal RNA small subunit methyltransferase B [Megasphaera
micronuciformis F0359]
Length = 441
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 169/315 (53%), Gaps = 15/315 (4%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MP 167
DRD R T++V GT+R Y+D++I +L +K +S++P+ L +LR+G Y++ +D +P
Sbjct: 36 DRDRRFYTELVYGTLRSLNYVDYIIGILSSRKK--NSLDPVCLAVLRMGLYQLFFMDKVP 93
Query: 168 PYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIY 227
P A +E V+LA+ G VN +LR L+ L +P + N L+ +
Sbjct: 94 PSAACNEAVKLARRFGNEGMAKFVNALLRNS--LRQKERLAIPTFDEN---PVLHLSLTW 148
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHEL 287
W++ +W G++ + L + ++ P +RAN+ + + R L+ L+ +P
Sbjct: 149 HQQSWLIEKWITEFGRDHTVTLCRYFDTVPELCIRANTER-IDREGLMKLLSEKGIPCRP 207
Query: 288 SLHLDEFIRVKT--GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ H + I + G+ + + + +GL +QDE + LV A+ DPQ I D CAAPG
Sbjct: 208 AEHAPDGIYAEKNPGIHKLTE---IADGLGLIQDEPSQLVAAIADPQEKTVIFDVCAAPG 264
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405
GKT ++A+ + VYA DI + +L+++ + + +V RT D + + K
Sbjct: 265 GKTTHLATLGTKSSTVYAFDIYEHKLKLIEDNVNRLGLKNV-RTRLQDGTSVGEIYPEKA 323
Query: 406 DKVLLDAPCSGLGVL 420
D VL+DAPCSGLG+L
Sbjct: 324 DCVLVDAPCSGLGIL 338
>gi|345021918|ref|ZP_08785531.1| hypothetical protein OTW25_11359 [Ornithinibacillus scapharcae
TW25]
Length = 448
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 101/322 (31%), Positives = 182/322 (56%), Gaps = 18/322 (5%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
++ + +D L+T+IV GTI+ + LD+ I + +K +EP + +LR+ Y++
Sbjct: 32 IKSNKISPKDEGLLTEIVYGTIQRKITLDYFIDYYLNSKK---KIEPWVRMLLRMSIYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLP-LPKLEGNDRAQ 219
LD +P +A+ E V +AK G +LVNG+LR + N LP + K++ D Q
Sbjct: 89 NYLDKVPDHAIFHEAVEIAKQRGHKGVASLVNGMLRTI----QRNGLPDIQKIQ--DPVQ 142
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
++ T SHP W+V+RW + G E ++ N + + S+R K ++R D + +LN
Sbjct: 143 RLSVET--SHPEWLVKRWIDHYGYETTKEMCEANLTTKAMSVRIQPLK-ISRKDAMERLN 199
Query: 280 LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 339
S+ ++ I + G N++++ L ++GL +QD+S+ LV ++D G ++D
Sbjct: 200 NEGYEVSASIFSEQGIIINNG--NILKSSLFEDGLVTIQDQSSMLVGELLDANAGDVVLD 257
Query: 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 399
C+APGGK ++A + +G++ A D++K +++++NE A + S+I AD R +
Sbjct: 258 ACSAPGGKATHIAEKMGNKGVIRAHDLHKKKIKLINEKANALDL-SIIEAEAADARNLGE 316
Query: 400 NSTVKC-DKVLLDAPCSGLGVL 420
+ + D++L+DAPCSGLGV+
Sbjct: 317 HYQNETFDRILVDAPCSGLGVM 338
>gi|148262276|ref|YP_001228982.1| sun protein [Geobacter uraniireducens Rf4]
gi|146395776|gb|ABQ24409.1| sun protein [Geobacter uraniireducens Rf4]
Length = 448
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 121/370 (32%), Positives = 187/370 (50%), Gaps = 33/370 (8%)
Query: 68 LMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRR 127
L+RI ++AD+L + E + GF L D L+T++V G +R +
Sbjct: 14 LLRIDKERSYADILIDR------------ELSSGF----LQGPDRGLLTELVYGVLRRQG 57
Query: 128 YLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPG 186
LD++I + +E +L +LRIG Y+I LD +P A V+E V+LAKV L P
Sbjct: 58 TLDYIINRFSKQKS--ERLERSVLVLLRIGLYQIFYLDRVPVSAAVNETVKLAKV-LAPR 114
Query: 187 AGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEA 246
A VN +LR +D+ + P ++ L+T YSHP W+V W LG EA
Sbjct: 115 ASGFVNAVLRSADRERDDIAYP-----DKEKDPVGYLSTFYSHPSWLVAGWIGQLGFAEA 169
Query: 247 IKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQ 306
L P ++R N+ K +R +L+ +L V E + +R+ T +V +
Sbjct: 170 ESLAKAMAEPPPLTIRTNTLK-TSREELMERLASEGVQCEATRFSPLGVRIITA-GSVAR 227
Query: 307 AGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDI 366
++GL VQDES+ L V + P+PG+ ++D CAAPGGK +MA + G + A D+
Sbjct: 228 LQSFRDGLFTVQDESSQLAVMFLSPEPGEKVLDACAAPGGKATHMAQLMGNSGEIIACDV 287
Query: 367 NKGRLRILNETAKLHQVNSVIRTIHADL-RTFADNSTVKCDKVLLDAPCSGLGVLSKTCV 425
+LR++ E A + S I+T+ + R + ++LLDAPCSGLGV+ +
Sbjct: 288 IGRKLRLIGENAARLGI-SCIKTVPLNTARPLNSIKDARFQRILLDAPCSGLGVIRRNPE 346
Query: 426 GIGDWRIWKS 435
G W WK+
Sbjct: 347 --GKW--WKT 352
>gi|121533700|ref|ZP_01665527.1| sun protein [Thermosinus carboxydivorans Nor1]
gi|121307691|gb|EAX48606.1| sun protein [Thermosinus carboxydivorans Nor1]
Length = 442
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 108/319 (33%), Positives = 163/319 (51%), Gaps = 11/319 (3%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+DL DRD R +T++V GT++ LD + L + + + P++ ILR+G Y+I L
Sbjct: 32 RDLTDRDRRFITELVYGTVKAGATLDWI--LSHYSSRPLDKIHPVIRNILRMGIYQIFFL 89
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
+P A +E V+LA+ G VN +LR D P +R + +
Sbjct: 90 SRIPVSAACNEAVKLAQKYGHAGTVKFVNAVLRSAGRSPDKVVYP-----DRERDPEKYI 144
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
A Y HP W+VRRW G +L NN P SLR N+ K +RADL+ +L V
Sbjct: 145 ALRYFHPEWLVRRWVARFGAAICERLCEANNETPPLSLRTNTLK-TSRADLLRRLAGEGV 203
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
E S E I + + L+ GL VQDES+ V V+ P+PG ++D C A
Sbjct: 204 VCEPSAWAPEGILCHE-YPALSKLASLRAGLFQVQDESSMTVAHVLSPRPGDFVIDACGA 262
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403
PGGK+ ++A+ + +G V A DI + +L ++ + A + S++ T D +
Sbjct: 263 PGGKSTHIAALMGNKGKVLATDIYEHKLALMRDNAVRLGI-SILETQLLDAVKLGELYPG 321
Query: 404 KCDKVLLDAPCSGLGVLSK 422
+ D+VL+DAPCSGLGVL +
Sbjct: 322 QADRVLVDAPCSGLGVLRR 340
>gi|118444654|ref|YP_878315.1| sun protein [Clostridium novyi NT]
gi|118135110|gb|ABK62154.1| sun protein [Clostridium novyi NT]
Length = 443
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 106/317 (33%), Positives = 164/317 (51%), Gaps = 13/317 (4%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+DD+D L+T+IV GTI+++ +D ++ +K S++ +L ILRI Y+I LD
Sbjct: 35 IDDKDKGLITEIVYGTIKYKYTIDTILNNFL--KKGIKSLDSYVLNILRITVYQIKFLDK 92
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A V+E V +AK GA LVNG+LR N L K ND+ L
Sbjct: 93 IPNFAAVNEAVEIAKKEKSVGASKLVNGVLR-------NYLRNLDKKYYNDKNLVETLCF 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
YS+ W+V K G E A ++ N P+ ++R N+ K + L
Sbjct: 146 KYSYDKWLVNMLIKQYGNEIAEDILKGLNERPAVTVRVNNLK-TDHDEAFSNLEEYGYDV 204
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
E E I + G +++ + L KEG VQDESA LV +D + G +++D C+APG
Sbjct: 205 EEGYICPEAIVINKG-KSIEKNPLFKEGKITVQDESAMLVAPSIDAKEGATVLDLCSAPG 263
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405
GKT +++ ++ G+V A DI++ +L ++ E AK +++ I D F
Sbjct: 264 GKTTHISEIMNNTGIVKAFDIHENKLSLVKENAKRLGIDN-ISCAEMDASKFNKELENSA 322
Query: 406 DKVLLDAPCSGLGVLSK 422
D VL+D PCSGLG++ K
Sbjct: 323 DMVLIDVPCSGLGIIRK 339
>gi|28210910|ref|NP_781854.1| 16S rRNA M(5)C 967 methyltransferase [Clostridium tetani E88]
gi|28203349|gb|AAO35791.1| 16S rRNA M(5)C 967 methyltransferase [Clostridium tetani E88]
Length = 454
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 106/320 (33%), Positives = 179/320 (55%), Gaps = 20/320 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L+++D +T++V GTI++R +D + L + +K S++ +L ILRIG Y++ LD
Sbjct: 47 LNEKDKAFITELVYGTIKYRHTIDTI--LNSYIKKGIKSVDKYVLNILRIGIYQLRYLDK 104
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A V+E V L KV + G G L+NG+LR + KD PK ++ L+
Sbjct: 105 VPSFAAVNECVELGKVKSK-GTGKLINGVLRNYIRNKD------PKYY-DESNLVEKLSF 156
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
YS+P WM+ + K G+E+ +++ NS PS ++R N+ ++D N L+ +
Sbjct: 157 EYSYPKWMIDLFLKQYGREKIEEILKGLNSIPSITVRVNN----IKSDYESVWNSLEDNN 212
Query: 286 ---ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
E L E IR+ G + + + L KEGL VQDESA LV +D + +++D C+
Sbjct: 213 YNIEEGLVCPEAIRIIKG-RAIEKNPLFKEGLITVQDESAMLVAGAMDLEDNMNVMDLCS 271
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402
APGGKT +++ ++ G V A DI++ +L ++ + + V + I I D + +
Sbjct: 272 APGGKTTHISEIMNNTGKVLAFDIHENKLDLIKQNKERLGVKN-IDLILGDGTLYNKKYS 330
Query: 403 VKCDKVLLDAPCSGLGVLSK 422
+++L+DAPCSGLG++ K
Sbjct: 331 EFANRILIDAPCSGLGIIRK 350
>gi|119357565|ref|YP_912209.1| sun protein [Chlorobium phaeobacteroides DSM 266]
gi|119354914|gb|ABL65785.1| sun protein [Chlorobium phaeobacteroides DSM 266]
Length = 444
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 104/321 (32%), Positives = 167/321 (52%), Gaps = 24/321 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
++ +D L T++V G +R R+ +D +I H F P+L ILR+G Y+++ L+
Sbjct: 34 MNRQDRALTTELVNGVLRMRKKIDFIISKFYHHR--FEKAAPVLQNILRLGVYQLLFLEK 91
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A V E V LA+ LVNG+LRK+ +N + L+G + + L+
Sbjct: 92 IPEWAAVSECVDLARKYKGERMAKLVNGVLRKIT---PDNVVMDEWLKGCEDMER--LSV 146
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
YSHP W++ RW G+E + M +NN P F R N+ K T + + P
Sbjct: 147 QYSHPEWLINRWNAVYGRETTLASMTYNNHAPLFGFRINTLKQ-TPDEFLADPAHSSFPQ 205
Query: 286 ELSLHLDEFIRVK-TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
E L + F+ + G + +++G L VQ+ + G+ +++P P ++D CAAP
Sbjct: 206 ERCLTGNFFLSKEFAGFEACLKSGKL-----TVQNPTQGVACLLLNPVPESRVLDLCAAP 260
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN---SVIRTIHADLRTFADNS 401
GGK +MA + +G + A+D + +L E + H V ++I+TI AD R+F
Sbjct: 261 GGKATFMAELMQNKGSITAVDRSSEKL----EKTRQHAVELGITIIKTICADARSFVPEE 316
Query: 402 TVKCDKVLLDAPCSGLGVLSK 422
T + VLLDAPC+G GVL K
Sbjct: 317 TPQA--VLLDAPCTGTGVLQK 335
>gi|414076371|ref|YP_006995689.1| ribosomal RNA small subunit methyltransferase B [Anabaena sp. 90]
gi|413969787|gb|AFW93876.1| ribosomal RNA small subunit methyltransferase B [Anabaena sp. 90]
Length = 446
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 117/326 (35%), Positives = 165/326 (50%), Gaps = 28/326 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI-VKLD 165
L D + RL+T++V G++R +R LD +I L K L IL +GFY++ +
Sbjct: 34 LPDNNRRLMTELVYGSVRRQRTLDAIIEQLA--TKKIQQQPKDLRTILHLGFYQLRYQER 91
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A V+ V LAK PG VNG+LR+ + L + +S PL E L
Sbjct: 92 IPASAAVNTTVELAKENGFPGLTGFVNGLLRQYLRLAEKSSEPLNLPEN----PVERLGI 147
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN----SRKGVTRADLVMQLNLL 281
+S P W++ W K LG EE KL W N P+ LR N S + V A + +
Sbjct: 148 FHSFPNWIIEVWLKELGFEETEKLANWMNQTPTIDLRVNILRSSLEEVQSAFESAGVLVK 207
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQA-GLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+PH L + +R+ G IQ EG VQD SA LV ++DP PG ++D
Sbjct: 208 PIPH-----LPQALRL-IGHNGAIQNLPGFNEGWWTVQDSSAQLVGHLLDPLPGNVVIDV 261
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN-SVIRTIHADLRT--- 396
CAAPGGKT ++A + +G ++A D RLR L E A H++N I D R
Sbjct: 262 CAAPGGKTTHIAELMGDKGKIWACDQTASRLRKLKENA--HRLNLQSIEICAGDSRNLPQ 319
Query: 397 FADNSTVKCDKVLLDAPCSGLGVLSK 422
F D++ D+VL+DAPCSGLG + +
Sbjct: 320 FYDSA----DRVLVDAPCSGLGTMHR 341
>gi|78042686|ref|YP_360313.1| sun protein [Carboxydothermus hydrogenoformans Z-2901]
gi|77994801|gb|ABB13700.1| sun protein [Carboxydothermus hydrogenoformans Z-2901]
Length = 440
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 98/322 (30%), Positives = 176/322 (54%), Gaps = 28/322 (8%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-M 166
+D+D V ++ G ++ + LD++ L K S + P ++ +R+G Y++ LD +
Sbjct: 36 EDKDF--VVELTYGVLKQLKLLDYMAGKLL---KKRSKLPPFVINAIRVGLYQLYFLDKV 90
Query: 167 PPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI 226
P YA ++E V K R G +VNG+LR + ++ + K++ +D + A+A
Sbjct: 91 PTYAAINETVEAVKRNYR-GFTGVVNGVLRNFIRRREE----ITKIDVSDEVEYLAIA-- 143
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA--DLVMQ--LNLLK 282
YSHP WMV+RW G + ++++ +NN P+ +LR N+ K +A DL+ + +N +
Sbjct: 144 YSHPEWMVKRWLNQYGYTKTVEILKYNNHQPNLTLRINTLKISPKAYCDLLNEKNINFKQ 203
Query: 283 VPH--ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+P+ E + LD K G++ + EGL +QD + + +++P+P +D
Sbjct: 204 LPYLPEGVVILD-----KVGVKELPG---YDEGLFYIQDTGSMFIAYLINPEPNSVGIDA 255
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
CAAPGGK+ ++A + +G++YA D++ GRL+++ E A +N +IR + D
Sbjct: 256 CAAPGGKSTHLAQLMGNKGIIYAFDVHPGRLKLIEENAHRLGIN-IIRCLLGDATRLKLP 314
Query: 401 STVKCDKVLLDAPCSGLGVLSK 422
V + +L D PCSG GVL++
Sbjct: 315 DGVNPNWILADVPCSGTGVLAR 336
>gi|434404680|ref|YP_007147565.1| ribosomal RNA small subunit methyltransferase RsmB [Cylindrospermum
stagnale PCC 7417]
gi|428258935|gb|AFZ24885.1| ribosomal RNA small subunit methyltransferase RsmB [Cylindrospermum
stagnale PCC 7417]
Length = 449
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 110/322 (34%), Positives = 161/322 (50%), Gaps = 18/322 (5%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI-VKL 164
+L DRD RLVT++V G++R +R LD LI L K P L IL +G Y++ +
Sbjct: 33 NLADRDRRLVTELVYGSVRRQRTLDALIDQLA--TKKSQQQPPDLRTILHLGLYQLRYQE 90
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P A V+ V LAK G NG+LR+ + L + + PL E L
Sbjct: 91 RIPASAAVNTTVELAKENGFAGLTGFANGVLRQYIRLAEKSPEPLELPEN----PVERLG 146
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN----SRKGVTRADLVMQLNL 280
++S P W+++ W + LG E KL W N P+ LR N S + V A + +
Sbjct: 147 ILHSFPDWIIQVWLEQLGFVETEKLCEWMNQTPTIDLRVNLLRSSIEQVESAFKSAGVLV 206
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
++P L + +R+ + +EG VQD SA LV ++DPQPG+ ++D
Sbjct: 207 RRIPS-----LPQALRLIGSTGPIQNLPGFREGWWTVQDSSAQLVSHLLDPQPGEVVIDV 261
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
CAAPGGKT ++A + G V+A D RLR L + A+ ++S I D R
Sbjct: 262 CAAPGGKTTHIAELMGDNGKVWACDRTPSRLRKLQQNAQRLNLHS-IEICTGDSRNLPQF 320
Query: 401 STVKCDKVLLDAPCSGLGVLSK 422
D+VL+DAPCSGLG + +
Sbjct: 321 QNT-ADRVLIDAPCSGLGTMHR 341
>gi|359457510|ref|ZP_09246073.1| 16S rRNA methyltransferase B [Acaryochloris sp. CCMEE 5410]
Length = 443
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 112/319 (35%), Positives = 164/319 (51%), Gaps = 10/319 (3%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K + D D RL+T+++ G++R +R LD LI +K P L +L +G Y++ L
Sbjct: 32 KTIADADRRLLTELLYGSVRRQRTLDALIDQFA--KKPAHQQPPDLRTLLHLGLYQLRFL 89
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
D +P A + V LAK G VNG+LR+ N + PL +L + + L
Sbjct: 90 DHIPDAAAIFTTVELAKQNKLSGLSGFVNGLLRQYTRAAANLNDPL-ELPPDP---IQRL 145
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
+YS+P W+V+ W LG EE KL + N P LR N K R + QL V
Sbjct: 146 GILYSYPDWIVQVWHDQLGSEETKKLCDYCNQPPHIDLRINPLK-TDRESVRSQLAAAGV 204
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
HL + +R+K + Q +EGL VQ+ SA LV +++PQPG +D CAA
Sbjct: 205 TTTPLPHLPQALRIKGKSGPIPQLPGFQEGLWTVQEASAQLVGHLLNPQPGAIALDVCAA 264
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403
PGGKT +MA + +G ++A D RLR L + + ++++V + D R D +
Sbjct: 265 PGGKTTHMAELMENRGEIWACDRTPSRLRKLKQNLQRLEIDAV-QIWTGDSRQLPDQIPL 323
Query: 404 KCDKVLLDAPCSGLGVLSK 422
D VL+DAPCSGLG L +
Sbjct: 324 -SDYVLVDAPCSGLGTLHR 341
>gi|427731853|ref|YP_007078090.1| ribosomal RNA small subunit methyltransferase RsmB [Nostoc sp. PCC
7524]
gi|427367772|gb|AFY50493.1| ribosomal RNA small subunit methyltransferase RsmB [Nostoc sp. PCC
7524]
Length = 449
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 117/320 (36%), Positives = 166/320 (51%), Gaps = 16/320 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPL-LLQILRIGFYEI-VKL 164
L D D RLVT++V G++R +R LD LI L + S +P L IL +GFY++ +
Sbjct: 34 LSDIDRRLVTELVYGSVRRQRTLDALIDQLATKK---SHQQPSDLRSILHLGFYQLRYQE 90
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLP-KLEGNDRAQARAL 223
+P A V+ V+LAK G VNG+LR+ V L +LP P KL N L
Sbjct: 91 RIPESAAVNTTVQLAKENGLAGLTGFVNGLLRQYVRLA--QTLPDPLKLPENP---VERL 145
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
++S P W++ W + LG E +L W N P+ LR N + + ++ L +
Sbjct: 146 GILHSFPDWIIEVWLEQLGLEATERLCEWMNQTPTIDLRINPLR-TSIEEVETSLTSAGI 204
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
+L + +R+ + +G VQD SA LV +DPQPG+ +VD CAA
Sbjct: 205 LARWIPNLPQALRLIGNTGPIKNLPGFSQGWWVVQDASAQLVSHFLDPQPGEVVVDACAA 264
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NST 402
PGGKT +MA + QG ++A D RLR L E A+ ++S I+ D R + N T
Sbjct: 265 PGGKTTHMAELMEDQGKIWACDRTASRLRKLKENAQRLGLHS-IQICTGDSRDLSQFNHT 323
Query: 403 VKCDKVLLDAPCSGLGVLSK 422
D+VLLDAPCSGLG L +
Sbjct: 324 --ADRVLLDAPCSGLGTLHR 341
>gi|427711378|ref|YP_007060002.1| ribosomal RNA small subunit methyltransferase RsmB [Synechococcus
sp. PCC 6312]
gi|427375507|gb|AFY59459.1| ribosomal RNA small subunit methyltransferase RsmB [Synechococcus
sp. PCC 6312]
Length = 458
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 115/323 (35%), Positives = 170/323 (52%), Gaps = 25/323 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQ-ILRIGFYEIVKL- 164
L+ D LVT++V GT+R +R LD LI LC +PL L+ ILR+G Y++ L
Sbjct: 48 LNSLDRGLVTELVYGTVRRQRTLDALIDHLCRQRN-----QPLNLRLILRLGLYQLRYLA 102
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P A V+ +V LAK G +VNG+LR + + + PLP+L LA
Sbjct: 103 QIPAAAAVNTSVELAKGCGLTGLAGVVNGVLRAYLRISQDRE-PLPELADP----LLNLA 157
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
S P W+V+ W L E L + N P+ LR NS + + D++ L K+P
Sbjct: 158 VQESFPDWIVQAWAAQLEMPETTALCQFFNQTPTIDLRVNSLQA-SPEDVLTALATAKIP 216
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
+L IR+ GL + +G +VQD +A LV ++DPQPG++I+D CAAP
Sbjct: 217 ATPLANLPGGIRLGAGLGAIAALPGYDKGWWSVQDAAAQLVTYLLDPQPGETIIDACAAP 276
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404
GGKT ++A + +G V A+D RLR L + + Q+ + A L AD++ ++
Sbjct: 277 GGKTTHIAERMQDRGTVIALDRVASRLRKLKQNQQRLQLTC----LQAQL---ADSTQIQ 329
Query: 405 -----CDKVLLDAPCSGLGVLSK 422
D+VL+DAPCSGLG L +
Sbjct: 330 TMLPLADRVLIDAPCSGLGTLHR 352
>gi|348027000|ref|YP_004766805.1| ribosomal RNA small subunit methyltransferase B [Megasphaera
elsdenii DSM 20460]
gi|341823054|emb|CCC73978.1| ribosomal RNA small subunit methyltransferase B [Megasphaera
elsdenii DSM 20460]
Length = 446
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 101/313 (32%), Positives = 164/313 (52%), Gaps = 11/313 (3%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL-DMP 167
DRD R T++V GT+R YLD +I + + ++P+ L I+R+G Y+I + +P
Sbjct: 36 DRDRRFYTELVYGTLRCLNYLDWIISQI--STRKLKKLDPVCLAIIRLGLYQIFGMTKVP 93
Query: 168 PYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIY 227
A +E V++A G VN +LR + +D +P D+ LA Y
Sbjct: 94 ESAACNEAVKMATKFGNKGMAKFVNAMLRNSIRRRDQFIIP-----DKDKNLTAYLALTY 148
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHEL 287
W+VRRW + G ++ +L + ++ P+ LR N+ +R DL+ +L P
Sbjct: 149 HQQGWLVRRWLEEYGPDDTERLCQYFDTIPALCLRVNT-AVTSREDLLAELEKQGQPARP 207
Query: 288 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 347
+ + I + G + + L++G +QDE + LV +VDPQP + + D CAAPGGK
Sbjct: 208 AAISPDGIYLD-GNPGIHELTCLRDGRAIIQDEPSQLVAHIVDPQPHEVVFDVCAAPGGK 266
Query: 348 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 407
T ++A+ +VY DI++ +LR++ A+ + +V RT+ + T K D+
Sbjct: 267 TTHLATLGGPSCVVYGGDIHEHKLRLIEYNAQKLGLKNV-RTLLQNGCTIGQKYAGKADR 325
Query: 408 VLLDAPCSGLGVL 420
VL+DAPCSGLGVL
Sbjct: 326 VLVDAPCSGLGVL 338
>gi|442805500|ref|YP_007373649.1| ribosomal RNA small subunit methyltransferase B [Clostridium
stercorarium subsp. stercorarium DSM 8532]
gi|442741350|gb|AGC69039.1| ribosomal RNA small subunit methyltransferase B [Clostridium
stercorarium subsp. stercorarium DSM 8532]
Length = 449
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 101/319 (31%), Positives = 171/319 (53%), Gaps = 11/319 (3%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K+L+ RD +T++V GT+ + LD +I + M L+LQILR+G Y+I+ L
Sbjct: 33 KELNSRDRAFITELVYGTVTRKLTLDWIISHFSKIQ--LKKMSNLVLQILRMGTYQIMFL 90
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
D +PP A + +V LAK + +G VN +LR + K+ S + + + L
Sbjct: 91 DRVPPSAACNTSVELAKRYAKQSSG-FVNAVLRNIARNKERISFE----DIDAPTVSEKL 145
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
+ YS P ++VR W G+ +L+ P FS+R N+ K T+ +V LN +
Sbjct: 146 SIKYSFPEYLVREWISVFGENFTEELLKAFLERPDFSVRINTLK-TTKESVVEDLNSHGI 204
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
+LDE + +K + ++ ++G VQDES+ +V ++DP+PG+ I+D CAA
Sbjct: 205 ETLPGRYLDEALYLKN-ISDISNLDAFQKGKITVQDESSMIVARILDPKPGEKILDTCAA 263
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403
PGGKT ++ + +G + A D+++ ++ ++NE AK V +I D + +
Sbjct: 264 PGGKTTHIGQLMQNRGHIDAWDVHEHKIALINENAKRLGV-EIINASQQDALYLLNEAKG 322
Query: 404 KCDKVLLDAPCSGLGVLSK 422
D+VL+DAPCSG G++ +
Sbjct: 323 VYDRVLVDAPCSGTGIIRR 341
>gi|443323050|ref|ZP_21052061.1| ribosomal RNA small subunit methyltransferase RsmB [Gloeocapsa sp.
PCC 73106]
gi|442787231|gb|ELR96953.1| ribosomal RNA small subunit methyltransferase RsmB [Gloeocapsa sp.
PCC 73106]
Length = 451
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 126/369 (34%), Positives = 185/369 (50%), Gaps = 43/369 (11%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L +I GA++D+ +ER L ++DL + LV ++V
Sbjct: 10 RELAFLALRQIYHRGAYSDIA--------------LERVLN--SRDLSPKAKNLVCELVY 53
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAV-VDENVRLA 179
G +R +RYLD LI L +K P L IL +G Y++ L+ A+ V +V LA
Sbjct: 54 GVVRRQRYLDALIDQL--GQKKAQQQPPDLRIILHLGLYQLCYLEKIIGAIAVSSSVELA 111
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
K G +VNG+LR + +N L LP +D Q L ++S P W+V W
Sbjct: 112 KKFGLTGLSGVVNGLLRSYQ--RSHNPLVLP----DDPVQR--LGILHSFPDWIVANWLD 163
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKT 299
LG EE +L W N PS LR N K T D + + + E L + + V
Sbjct: 164 VLGLEETTQLCQWFNQSPSLDLRVNILK--TSVDKMATILI-----EQGLAVTKLETVPQ 216
Query: 300 GLQ------NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMAS 353
GL+ ++ Q +G VQD SA LV ++DPQPG+ I+D CAAPGGKT ++A
Sbjct: 217 GLRINGPRGSIQQLPGYDQGWWVVQDSSAQLVTHLLDPQPGEKIIDACAAPGGKTTHIAE 276
Query: 354 CLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 413
+ G V+AID + RL+ + E Q+NS+ ++H L + +CD+VL+DAP
Sbjct: 277 LMGDVGEVWAIDRSFKRLKKVQENLDRLQLNSI--SLH-HLDSSTSELPQECDRVLVDAP 333
Query: 414 CSGLGVLSK 422
CSG G L K
Sbjct: 334 CSGNGTLHK 342
>gi|423084336|ref|ZP_17072841.1| ribosomal RNA small subunit methyltransferase B [Clostridium
difficile 002-P50-2011]
gi|423088032|ref|ZP_17076417.1| ribosomal RNA small subunit methyltransferase B [Clostridium
difficile 050-P50-2011]
gi|357542641|gb|EHJ24683.1| ribosomal RNA small subunit methyltransferase B [Clostridium
difficile 002-P50-2011]
gi|357543560|gb|EHJ25577.1| ribosomal RNA small subunit methyltransferase B [Clostridium
difficile 050-P50-2011]
Length = 441
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 101/325 (31%), Positives = 175/325 (53%), Gaps = 23/325 (7%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F+ ++ D D L T+++ G I + YLD++I L + M + LR+G Y+I
Sbjct: 29 FKNLEISDMDRGLATELIYGVIENKYYLDYIINKLS--KIKVKKMSTYVKIFLRMGTYQI 86
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD + YA V+E V+L+K + +G +N ILR + K+ ++ +
Sbjct: 87 LFLDSISDYAAVNETVKLSKKYDKKSSG-FINAILRNEIRAKE------TIMDITEEDSV 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN- 279
+ L+ YS+ W+++ W GQE A L+ NN PS +R N+ K ++R +L+ +L+
Sbjct: 140 KYLSIKYSYNSWIIKNWIDKFGQEFAEDLLEANNEKPSIYIRTNTLK-ISREELIEKLSE 198
Query: 280 ----LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
LKVP ++E I+V+ ++N+ + L K GL +QD S+ +V V++P+ G
Sbjct: 199 MGIVCLKVPM-----VEEAIKVEK-MKNIEKNELFKAGLFTIQDISSMIVGKVINPKEGS 252
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
++D C+APGGK+ ++A+ ++ G V A DI + +L+++ T + +V D
Sbjct: 253 FVLDVCSAPGGKSTHLATLMNNTGQVVARDIFEHKLKLIKSTVNRLGLKNVFVE-RFDAS 311
Query: 396 TFADNSTVKCDKVLLDAPCSGLGVL 420
+NS K D VL D PCSG G++
Sbjct: 312 EIDENSISKFDYVLADVPCSGFGII 336
>gi|333371233|ref|ZP_08463192.1| RNA methyltransferase Sun [Desmospora sp. 8437]
gi|332976420|gb|EGK13268.1| RNA methyltransferase Sun [Desmospora sp. 8437]
Length = 453
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 106/319 (33%), Positives = 168/319 (52%), Gaps = 15/319 (4%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L RD L T++V GT++ + LD ++ L K +++P + +LR+G Y++ LD
Sbjct: 38 LSPRDRGLATELVYGTLQRKNTLDWILNKLVR--KGIDTLDPWVRHLLRLGIYQLRYLDR 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A V E V +AK G LVNG+LR + +LP + LA
Sbjct: 96 VPSRAAVHETVEIAKARGHRGIPGLVNGVLRSYLRRGREWTLP------DSPKSVTDLAL 149
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKG-VTRADLVMQLNLLKVP 284
+ SHP W+VRR + G E A ++ NN P S+R N +G R ++Q ++
Sbjct: 150 VTSHPEWLVRRLVEVYGPETAHSVLKANNRPPGLSVRVNPLRGNRERVARLLQEEDPRLR 209
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
LS + + + G N L +EG VQDES+ LV ++ P+PG+ ++D CAAP
Sbjct: 210 IRLSPLSGQGLILTGG--NPASGRLFREGWFTVQDESSMLVAELLAPRPGERVLDGCAAP 267
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRIL-NETAKLHQVNSVIRTIHADLRTFADNSTV 403
GGKT ++A + +G + A DI+ +++++ N+ +L S++ ADLR
Sbjct: 268 GGKTGHLAERMENRGTLLACDIHPHKVKLIENQVRRLGL--SMVEVRQADLRELPGTGEA 325
Query: 404 KCDKVLLDAPCSGLGVLSK 422
+ D+VLLDAPCSG GV+ +
Sbjct: 326 RFDRVLLDAPCSGWGVIRR 344
>gi|425436930|ref|ZP_18817360.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9432]
gi|389678290|emb|CCH92851.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9432]
Length = 446
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 119/338 (35%), Positives = 168/338 (49%), Gaps = 17/338 (5%)
Query: 90 DNEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
D Y +R L L+ D L T+IV G +R +R LD L+ L +KT +
Sbjct: 16 DRSSAYPDRALDRHLSASSLNCLDKALTTEIVYGIMRRQRTLDALLDRL--GKKTAAQQP 73
Query: 148 PLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
P L +IL IG Y++ L +PP A V+ V L K++ +VNG+LR+ + L N
Sbjct: 74 PDLRRILHIGLYQLRYLSQIPPSAAVNTAVELTKISHLGKLAAVVNGMLRQYLRLTANGD 133
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
PL E A L ++S P W+V+ W E +L W N P +R N
Sbjct: 134 DPLLLPENT----ASRLGILHSFPDWLVQLWLDRFSVTETEQLCQWFNRSPDLDIRINPL 189
Query: 267 KGVTRADLVMQLNLLKVP-HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLV 325
K +R L +L + H L L L R+ +GL N+ + + G +QD SA LV
Sbjct: 190 K-TSREALENELESANITFHHLKLPL--ACRLTSGLGNIERLEGFRAGNYTLQDISAQLV 246
Query: 326 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385
++DPQPG++I+D CAAPGGKT ++A + QG + A D RLR L K + +
Sbjct: 247 TYLLDPQPGETIIDACAAPGGKTTHIAELMGDQGRILACDQTASRLRQLEANIKRLDLKA 306
Query: 386 VIRTIH-ADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
+ IH D R + D+VL+DAPCSGLG L K
Sbjct: 307 I--EIHLGDSRDRPQWCGI-ADRVLIDAPCSGLGTLHK 341
>gi|194014930|ref|ZP_03053547.1| ribosomal RNA small subunit methyltransferase B [Bacillus pumilus
ATCC 7061]
gi|194013956|gb|EDW23521.1| ribosomal RNA small subunit methyltransferase B [Bacillus pumilus
ATCC 7061]
Length = 442
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 176/322 (54%), Gaps = 14/322 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ KDL D+D L+T++V GT++ + LD+++ K + P ++Q+LR+ Y++
Sbjct: 27 MKDKDLADQDKPLLTELVYGTLQNKLALDYMLAPFV---KKPQKVAPWVMQLLRMSLYQM 83
Query: 162 VKLDMPPY-AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
V L+ P+ A + E V L K G +LVNG+LR + +P + + +
Sbjct: 84 VYLEKIPHRAAIHEAVELTKKRGHKGISSLVNGVLRSV------QREGVPAFD-DIKDPV 136
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
+ L+ SHP+W+V+ W + G E A + + P +LR N R + RA L +L
Sbjct: 137 KRLSIETSHPLWLVQEWVQSYGFEAAESMCRIHLVPPKQTLRVN-RMKIGRAALQQELLD 195
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ EL ++ +++ G +++ +EG +QDES+ LV +DPQPG++++D
Sbjct: 196 AGIETELGDLSEDALKLMKG--SIVSTPSFQEGYVTIQDESSMLVARALDPQPGEAVLDA 253
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
CAAPGGK+ ++A ++ +G + ++D+++ +++++ + AK + + + D
Sbjct: 254 CAAPGGKSTHIAERMNDKGQIVSLDLHEHKVKLIKQAAKRLNLTQIEAKALDARKAKGDY 313
Query: 401 STVKCDKVLLDAPCSGLGVLSK 422
S D++L+DAPCSG GV+ +
Sbjct: 314 SEASFDRILIDAPCSGFGVIRR 335
>gi|166367976|ref|YP_001660249.1| rRNA SAM-dependent methyltransferase [Microcystis aeruginosa
NIES-843]
gi|166090349|dbj|BAG05057.1| rRNA SAM-dependent methyltransferase [Microcystis aeruginosa
NIES-843]
Length = 450
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 119/338 (35%), Positives = 168/338 (49%), Gaps = 17/338 (5%)
Query: 90 DNEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
D Y +R L L+ D L T+IV G IR +R LD L+ L +KT +
Sbjct: 16 DRSSAYPDRALDRHLSASSLNCLDTALTTEIVYGIIRRQRTLDALLDRL--GKKTAAQQP 73
Query: 148 PLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
P L +IL IG Y++ L +PP A V+ V L K++ +VNG+LR+ + L N
Sbjct: 74 PDLRRILHIGLYQLRYLSQIPPSAAVNTAVELTKISHLGKLAAVVNGMLRQYLRLTANGD 133
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
PL E A L ++S P W+V+ W E +L W N P +R N
Sbjct: 134 DPLLLPENT----ASRLGILHSFPDWLVQLWLDRFSVTETEQLCQWFNRSPDLDIRINPL 189
Query: 267 KGVTRADLVMQLNLLKVP-HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLV 325
K +R L +L + H L L L R+ +GL N+ + + G +QD SA LV
Sbjct: 190 K-TSREALENELESANITFHHLKLPL--ACRLTSGLGNIERLEGFRAGNYTLQDISAQLV 246
Query: 326 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385
++DPQPG++I+D CAAPGGKT ++A + +G + A D RLR L K + +
Sbjct: 247 TYLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQTASRLRQLEANIKRLDLKA 306
Query: 386 VIRTIH-ADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
+ IH D R + D+VL+DAPCSGLG L K
Sbjct: 307 I--EIHLGDSRDRPQWHGI-ADRVLIDAPCSGLGTLHK 341
>gi|288553113|ref|YP_003425048.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus pseudofirmus
OF4]
gi|288544273|gb|ADC48156.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus pseudofirmus
OF4]
Length = 448
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 107/322 (33%), Positives = 175/322 (54%), Gaps = 23/322 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD RD+ L+T++V GTI+ R LD+ + +K +E + +LR+ Y++V LD
Sbjct: 36 LDRRDIGLLTELVYGTIQRRDTLDYFLAPFV--KKGIDKLEDWVKVLLRLSVYQLVYLDR 93
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P AVV E V +AK G +VNG+LR + +P K N++ + LA
Sbjct: 94 IPDRAVVHEAVTIAKKRGHKGISGMVNGVLRSI----GREGVPDIK---NEKDPIKRLAL 146
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN---LLK 282
SHP W+V RW K G+E+ + N P+ ++R N K TR +++ L +
Sbjct: 147 ETSHPKWLVARWVKQFGEEDTRLMCEENLVSPAVTVRVNQTKA-TREEVISMLEADGIAA 205
Query: 283 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
V ELS ++ + +K+G V ++ K+G QDES+ LV + G+ + D CA
Sbjct: 206 VKGELS---EDALIIKSG--QVFESKAFKQGYVTAQDESSMLVGRALGANSGERVADVCA 260
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRIL-NETAKLHQVNSVIRTIHADLRTFADNS 401
APGGKT ++A ++ +G V A D++ +++++ + A+L S+I T AD R A+
Sbjct: 261 APGGKTTHIAEQMNNEGSVLAFDLHDHKVKLIRGQAARLDL--SIIDTQAADARKLAEKF 318
Query: 402 TVKC-DKVLLDAPCSGLGVLSK 422
+ D++L+DAPCSG GV+ +
Sbjct: 319 EPESFDRILVDAPCSGFGVIKR 340
>gi|168186789|ref|ZP_02621424.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum C str. Eklund]
gi|169295225|gb|EDS77358.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum C str. Eklund]
Length = 443
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/319 (33%), Positives = 170/319 (53%), Gaps = 17/319 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+DD+D L+T+IV GTI+++ +D + L + +K S++ +L ILRI Y+I LD
Sbjct: 35 IDDKDKGLITEIVYGTIKYKYTIDTI--LNNYLKKGIKSLDSYVLNILRITVYQIKFLDK 92
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A V+E V +AK GA LVNG+LR N L K N+++ L
Sbjct: 93 IPNFAAVNEAVEIAKKQRSVGASKLVNGVLR-------NYLRNLDKKYYNEKSLVETLCF 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
YS+ W+V K G E A ++ N P+ ++R N+ K T D + NL +
Sbjct: 146 KYSYDKWLVNMLIKQYGNEIAEDILKGLNERPAVTVRVNNLK--TDYDEAFK-NLEDYGY 202
Query: 286 ELSLHL--DEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
++ E I + G +++ + L KEG VQDESA LV +D + G +++D C+A
Sbjct: 203 DVEEGYICPEAIVINKG-KSIEKNPLFKEGKITVQDESAMLVAPSIDAKEGATVLDLCSA 261
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403
PGGKT +++ ++ G+V A DI+ ++ ++ E AK +N+ I D F
Sbjct: 262 PGGKTTHISEIMNNTGIVKAFDIHDNKISLVKENAKRLGINN-IACAEMDACKFNKELEN 320
Query: 404 KCDKVLLDAPCSGLGVLSK 422
D VL+D PCSGLG++ K
Sbjct: 321 SADMVLIDVPCSGLGIIRK 339
>gi|399048081|ref|ZP_10739811.1| ribosomal RNA small subunit methyltransferase RsmB [Brevibacillus
sp. CF112]
gi|398053995|gb|EJL46141.1| ribosomal RNA small subunit methyltransferase RsmB [Brevibacillus
sp. CF112]
Length = 448
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 112/347 (32%), Positives = 182/347 (52%), Gaps = 25/347 (7%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D LVT++V GTI+ + LDH++ ++K ++ + +LR+ Y+I LD +P
Sbjct: 41 DTGLVTELVYGTIQRKLTLDHVLSHFVGNKK----LQTWVRNLLRLSLYQIRFLDRIPER 96
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A V E V +AK G ++VNG+LR VL + + LPK DRA +A +SH
Sbjct: 97 AAVHEAVEMAKRRGHQGIASMVNGVLRN-VLRQPDVWERLPK---GDRATQ--IAVEHSH 150
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSL 289
P W+VR+W G+ I + NN P S+R NS K + ++L+ +L + S
Sbjct: 151 PEWLVRQWLAVYGEATTIAICEANNRHPHSSIRVNSLK-TSASELLDKLAAEETAARQSA 209
Query: 290 HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 349
+ I V+ G + + L +EG +QDES+ LV + +PG ++D CAAPGGKT
Sbjct: 210 LSPQAILVEGG--HAAGSRLFREGYFTIQDESSMLVAPALAAKPGMRVLDACAAPGGKTT 267
Query: 350 YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 409
++A + +G + A D++ + ++ +TAK + S+I I +D D D++L
Sbjct: 268 HIAELMENRGHIVACDLHPHKRDLIAQTAKRLGI-SIIEPITSDALDLPDRGLGTFDRIL 326
Query: 410 LDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
LDAPCSG GV+ + L++ KT ++ + + +Y LL
Sbjct: 327 LDAPCSGFGVIRRK----------PDLKWNKTPEDVRAIAQLQYELL 363
>gi|443652432|ref|ZP_21130849.1| ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa DIANCHI905]
gi|159030883|emb|CAO88564.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443334299|gb|ELS48818.1| ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa DIANCHI905]
Length = 446
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 117/337 (34%), Positives = 167/337 (49%), Gaps = 15/337 (4%)
Query: 90 DNEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
D Y +R L L+ D L T+IV G +R +R LD L+ L +KT +
Sbjct: 16 DRSSAYPDRALDRHLSASSLNCLDKALTTEIVYGIVRRQRTLDALLDRL--GKKTAAQQP 73
Query: 148 PLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
P L +IL IG Y++ L +PP A V+ V L K++ +VNG+LR+ + L N
Sbjct: 74 PDLRRILHIGLYQLRYLSQIPPSAAVNTAVELTKISHLGKLAAVVNGMLRQYLRLTANGD 133
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
PL E A L ++S P W+V+ W G E +L W N P +R N
Sbjct: 134 DPLILPENT----ASRLGILHSFPDWLVQLWLDRFGVTETEQLCQWFNRSPDLDIRINPL 189
Query: 267 KGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVV 326
K +R L +L + L L R+ +GL N+ + + G +QD SA LV
Sbjct: 190 K-TSREALENELESANITFN-HLKLPLACRLTSGLGNIERLEGFRAGNYTLQDISAQLVT 247
Query: 327 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV 386
++DPQPG++I+D CAAPGGKT ++A + +G + A D RLR L K + ++
Sbjct: 248 HLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQTPSRLRQLEANIKRLDLKAI 307
Query: 387 IRTIH-ADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
IH D R + D+VL+DAPCSGLG L K
Sbjct: 308 --EIHLGDSRDRPQWCGI-ADRVLIDAPCSGLGTLHK 341
>gi|433544430|ref|ZP_20500814.1| ribosomal RNA small subunit methyltransferase [Brevibacillus agri
BAB-2500]
gi|432184285|gb|ELK41802.1| ribosomal RNA small subunit methyltransferase [Brevibacillus agri
BAB-2500]
Length = 448
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 112/347 (32%), Positives = 182/347 (52%), Gaps = 25/347 (7%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D LVT++V GTI+ + LDH++ ++K ++ + +LR+ Y+I LD +P
Sbjct: 41 DTGLVTELVYGTIQRKLTLDHVLSHFVGNKK----LQTWVRNLLRLSLYQIRFLDRIPER 96
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A V E V +AK G ++VNG+LR VL + + LPK DRA +A +SH
Sbjct: 97 AAVHEAVEMAKRRGHQGIASMVNGVLRN-VLRQPDVWERLPK---GDRATQ--IAVEHSH 150
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSL 289
P W+VR+W G+ I + NN P S+R NS K + ++L+ +L + S
Sbjct: 151 PEWLVRQWLTVYGEATTIAICEANNRHPHSSIRVNSLK-TSASELLDKLAAEETAARQSA 209
Query: 290 HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 349
+ I V+ G + + L +EG +QDES+ LV + +PG ++D CAAPGGKT
Sbjct: 210 LSPQAILVEGG--HAAGSRLFREGYFTIQDESSMLVAPALAAKPGMRVLDACAAPGGKTT 267
Query: 350 YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 409
++A + +G + A D++ + ++ +TAK + S+I I +D D D++L
Sbjct: 268 HIAELMENRGHIVACDLHPHKRDLIAQTAKRLGI-SIIEPITSDALDLPDRGLGTFDRIL 326
Query: 410 LDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
LDAPCSG GV+ + L++ KT ++ + + +Y LL
Sbjct: 327 LDAPCSGFGVIRRK----------PDLKWNKTPEDVRAIAQLQYELL 363
>gi|227824651|ref|ZP_03989483.1| SUN protein [Acidaminococcus sp. D21]
gi|352683751|ref|YP_004895735.1| SUN protein [Acidaminococcus intestini RyC-MR95]
gi|226905150|gb|EEH91068.1| SUN protein [Acidaminococcus sp. D21]
gi|350278405|gb|AEQ21595.1| SUN protein [Acidaminococcus intestini RyC-MR95]
Length = 445
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 120/368 (32%), Positives = 186/368 (50%), Gaps = 37/368 (10%)
Query: 61 RAVSAVRLMRIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIV 119
R ++ + L I GA+A+L LNK +G+G L D +L T++V
Sbjct: 8 RELALLVLDEIYERGAYANLALNKALRGNG-----------------LSSLDRKLCTELV 50
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRL 178
GT++ LD +C + + + F M P L ILR+G Y+I+ L+ +P A V+E L
Sbjct: 51 YGTVKTTGTLDWYLCRVIN--RPFRKMAPRLRTILRMGAYQILYLERIPDSAAVNECANL 108
Query: 179 AKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWT 238
A+ + + LVNG+LR+L K P + + R LA Y HP W+VRRW
Sbjct: 109 ARYYVNENSVKLVNGVLRQLSRTKATWQFPQKEEDATLR-----LALTYYHPEWLVRRWK 163
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFI--R 296
G EA + ++N+ PS LR N+ ++R L+ +L E S + I R
Sbjct: 164 FRFGLPEAEAMCAYDNAVPSLCLRVNT-LFISRKTLLERLQADGCEVEPSKWSPDGIVCR 222
Query: 297 VKTGLQNVIQAGLLKEG--LCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASC 354
L+ L+KE +QDES+ L V+ P+PG ++D CAAPGGKT ++A
Sbjct: 223 HLPSLET-----LMKEWGRFLYIQDESSMLDADVLAPKPGDLVLDFCAAPGGKTTHLAQK 277
Query: 355 LSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPC 414
+ +G + A+DI+ RL ++ E A + ++ +H + + D VL+DAPC
Sbjct: 278 MENKGKIIAMDIHDHRLTLIEENATRLGITNIRALLHDGTKPLPGFEN-RADAVLVDAPC 336
Query: 415 SGLGVLSK 422
SGLGVL++
Sbjct: 337 SGLGVLNR 344
>gi|332710036|ref|ZP_08429991.1| ribosomal RNA small subunit methyltransferase RsmB [Moorea
producens 3L]
gi|332351179|gb|EGJ30764.1| ribosomal RNA small subunit methyltransferase RsmB [Moorea
producens 3L]
Length = 477
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 124/384 (32%), Positives = 186/384 (48%), Gaps = 47/384 (12%)
Query: 61 RAVSAVRLMRIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIV 119
R ++ + L I GAFAD+ LN+ L D LVT++V
Sbjct: 15 RQLAFLALRDIHRRGAFADIALNRV-----------------LHNAQLTGADRGLVTELV 57
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI-VKLDMPPYAVVDENVRL 178
G++R +R LD L+ L +K + P L IL +G Y++ + +P A V+ V L
Sbjct: 58 YGSVRRQRTLDALLDQL--GKKKANQQPPDLRTILHLGLYQLRYQGRIPASAAVNTTVDL 115
Query: 179 AKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWT 238
AK G +VNG+LR L N+ PL +L D + L ++S P WM+ W
Sbjct: 116 AKNNGFKGLAGVVNGLLRNYARLAANSPDPL-ELPAGDMER---LGILHSFPDWMIELWL 171
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRK--------GVTRADLVMQLNLLKVPHELS-- 288
+ LG EE +L W N P+ LR N K G+ A+L +Q V H+
Sbjct: 172 QQLGLEETEQLCQWFNQSPTIDLRINPLKVSIEEVEAGMQSAELAIQRVPTLVSHQDEGN 231
Query: 289 ----------LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 338
L + +R+ G+ + + KEG VQD SA LV ++DPQPG ++
Sbjct: 232 GEIIPMFSNPAQLPQALRIVGGVGAIQELPGFKEGWWTVQDCSAQLVSYLLDPQPGDVVI 291
Query: 339 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398
D CAAPGGKT ++A ++ QG ++A D + RL+ + + A+ ++ S I+ D R
Sbjct: 292 DACAAPGGKTTHIAELMADQGKIWACDRSASRLKKVQQNAQRLELQS-IQISTGDSRDCP 350
Query: 399 DNSTVKCDKVLLDAPCSGLGVLSK 422
+ + V + VLLDAPCSG G L +
Sbjct: 351 EFTNV-ANAVLLDAPCSGNGTLHR 373
>gi|85858797|ref|YP_460999.1| 16S rRNA m(5)C 967 methyltransferase [Syntrophus aciditrophicus SB]
gi|85721888|gb|ABC76831.1| 16S rRNA m(5)C 967 methyltransferase [Syntrophus aciditrophicus SB]
Length = 471
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 109/318 (34%), Positives = 169/318 (53%), Gaps = 17/318 (5%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L+T +V GT+R R LD +I L + FSSM+ + ILR Y+ + ++ +P +
Sbjct: 60 DRHLLTSLVYGTLRMRGRLDWIIQQLY--QGRFSSMQGGIRNILRTALYQFLFMERIPAF 117
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A+VDE V LAK+ PG LVN +LR V N L P + + +A ++SH
Sbjct: 118 ALVDEAVELAKLRY-PGREKLVNALLRNAVRKVSANELSYPDFQ---KTPVEHIAVMHSH 173
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL--VMQLNLLKVPHEL 287
P W+VRRW G E L + NN P ++R NS K R+ L +++ V E
Sbjct: 174 PPWLVRRWLSVYGTERCRSLCMANNQVPPVAIRVNSLKA-DRSTLKEILEHEGFTV-SES 231
Query: 288 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 347
S D + + +++ +EGL +QDE++ L+ +V P G++I+D C G K
Sbjct: 232 SFSPDALL-ITDPPRHLRLTSTSREGLFILQDEASQLIGRLVAPAAGEAILDVCCGTGVK 290
Query: 348 TLYMASCLSGQGLVYAIDINKGRLRILNE-TAKLHQVNSVIRTIHADLRTFADNSTVK-- 404
T ++AS +S QG + A+D+ +L LN ++++ N IR AD T D + +
Sbjct: 291 TTHLASLMSNQGRILAVDLYPAKLEALNRLSSRMGISNIEIR--QADASTMEDETAFRNM 348
Query: 405 CDKVLLDAPCSGLGVLSK 422
D++L+DAPCSGLG L +
Sbjct: 349 FDRILVDAPCSGLGTLRR 366
>gi|338813384|ref|ZP_08625513.1| 16S rRNA methyltransferase B [Acetonema longum DSM 6540]
gi|337274743|gb|EGO63251.1| 16S rRNA methyltransferase B [Acetonema longum DSM 6540]
Length = 450
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 105/319 (32%), Positives = 164/319 (51%), Gaps = 11/319 (3%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ L ++D R +T++V GT++ + L+ L+ C ++ + P++ ILR+G Y++ L
Sbjct: 32 QTLSNQDRRFMTELVYGTVKAQNTLNWLLSHYC--SRSLDKISPVIRNILRMGIYQLFFL 89
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
D +P A ++ V L K G VN +LR D P P + + L
Sbjct: 90 DRIPVSAACNQAVELTKKYGHAGTVKFVNAVLRNAARTLDKPVYPDPANHPD-----QYL 144
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
+ Y HP WM+ RW G +L NN P SLR N+ K ++R DL+ +L +
Sbjct: 145 SLRYYHPEWMIERWLTRYGFAFCEELCASNNLTPPLSLRTNTLK-ISRDDLLDRLTAEQA 203
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
S E + V T + L+EGL VQDES+ LV V+ PQPG+ I+D C A
Sbjct: 204 TATPSDWTPEGL-VCTEHPALASMPSLQEGLFQVQDESSMLVAHVLGPQPGEFIIDACGA 262
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403
PGGK+ ++A+ ++ G V A D+ + +L ++ E AK ++ + T D
Sbjct: 263 PGGKSTHIAALMNNSGKVLATDLYEHKLALIRENAKRLGIH-CLETRQMDAVKLNSLYKN 321
Query: 404 KCDKVLLDAPCSGLGVLSK 422
+ D+VL+DAPCSGLGVL +
Sbjct: 322 QADRVLVDAPCSGLGVLRR 340
>gi|260892752|ref|YP_003238849.1| sun protein [Ammonifex degensii KC4]
gi|260864893|gb|ACX51999.1| sun protein [Ammonifex degensii KC4]
Length = 452
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 105/314 (33%), Positives = 160/314 (50%), Gaps = 18/314 (5%)
Query: 114 LVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVV 172
L+T++ GT+R +D ++ ++ P + ILR+ Y+I+ LD +PP A
Sbjct: 42 LLTELCYGTLRRLNTIDWVLAKFI--KRPLCEQNPWIRNILRLAVYQILYLDRIPPAAAT 99
Query: 173 DENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVW 232
+E V LAK P VN +LR++V KDN + P + D LA YSHP W
Sbjct: 100 NEAVELAKKYAPPSMAGFVNAVLRRVVREKDNLTFPDIRTNPVDH-----LALKYSHPTW 154
Query: 233 MVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL----NLLKVPHELS 288
+V W K G EE I++ NN + +LR N + TR +L+ +L +L P +
Sbjct: 155 LVEMWLKEFGLEETIRICEANNQPAAATLRTNLLR-TTREELMERLRREADLRVSP---T 210
Query: 289 LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKT 348
L+ E IRV+ G ++ +EGL +QDES+ L + P G ++D C APGGK
Sbjct: 211 LYAPEGIRVQ-GFFDLQHLPSYQEGLFYIQDESSMLAAHALAPASGSFVLDVCGAPGGKA 269
Query: 349 LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKV 408
++A + G + +DI RL ++ ++ + SV T+ AD R+ + D V
Sbjct: 270 THLAELMRDSGRILVVDIYAHRLALVVANSRRLGLKSV-ETLQADARSLDQQFAGQADYV 328
Query: 409 LLDAPCSGLGVLSK 422
L D PCSGLGVL +
Sbjct: 329 LADVPCSGLGVLRR 342
>gi|194336038|ref|YP_002017832.1| sun protein [Pelodictyon phaeoclathratiforme BU-1]
gi|194308515|gb|ACF43215.1| sun protein [Pelodictyon phaeoclathratiforme BU-1]
Length = 445
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 105/328 (32%), Positives = 169/328 (51%), Gaps = 18/328 (5%)
Query: 96 VERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILR 155
+ R+L T + DR L T +V G +R+R LD +I H + P++ ILR
Sbjct: 26 LHRSLHHSTLNRADRALS--TGLVNGVLRYRLQLDFVIAQFYHHK--LEKAAPIMKNILR 81
Query: 156 IGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG 214
+G Y+I+ L+ +P +A V+E V+LA+ LVNG+LRK+ S+ L +
Sbjct: 82 LGVYQILFLNKVPDWAAVNECVKLARKYKGERMSKLVNGVLRKIT----PESVTLDEWL- 136
Query: 215 NDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL 274
++ LA YSHP W+V RW+ G E++ L+ +NN PSF R N K +
Sbjct: 137 KEKKNEEQLAVKYSHPQWLVERWSAAYGNEKSEALLSYNNQFPSFGFRINRLKN-SAGRF 195
Query: 275 VMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 334
+ V HE S +D K N + ++ +G VQ+ + L ++ P PG
Sbjct: 196 FSDPAMAAVMHEES-GIDNIFLSKDF--NAFEPAVI-DGRLTVQNPTQALACLLLHPAPG 251
Query: 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 394
+++D CAAPGGK +MA + +G + A+D + +L + A+ + ++I+T+ D
Sbjct: 252 SNVLDLCAAPGGKATFMAELMENRGQITAVDRYEQKLEKIESHAEALGI-TIIKTVMEDA 310
Query: 395 RTFADNSTVKCDKVLLDAPCSGLGVLSK 422
R+F + D +LLDAPC+G GVL +
Sbjct: 311 RSFM--PEIHPDAILLDAPCTGTGVLGR 336
>gi|385799660|ref|YP_005836064.1| sun protein [Halanaerobium praevalens DSM 2228]
gi|309389024|gb|ADO76904.1| sun protein [Halanaerobium praevalens DSM 2228]
Length = 449
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 104/318 (32%), Positives = 171/318 (53%), Gaps = 17/318 (5%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-M 166
D RD L T+I G IR + YLD++I + + M+ +L LRIG Y++ LD +
Sbjct: 34 DKRDKNLFTEIYYGVIRNKLYLDYIINQFS--KTSLLKMDSEVLMGLRIGVYQLFFLDKV 91
Query: 167 PPYAVVDENVRLAKVAL---RPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
P A + E+V K+ L + GA + NG+LR + + NS+ LP ++ + L
Sbjct: 92 PARAAIYESVEAVKIILPASQKGAISFTNGVLRNIN--RKRNSIKLP---AKNKDPEKHL 146
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
+ YS+P+W+V+R+ K G ++ K++ N R NS K +T+A + L+ +
Sbjct: 147 SIKYSYPMWLVKRFIKQYGFNKSEKILKAGNKRAEVIYRHNSLK-MTKAQFIELLDAADL 205
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
+E S L+ F ++K + N Q + K G +Q SAGL ++DP ++D AA
Sbjct: 206 EYE-STFLESFYKLKK-VNNPAQTKVFKRGGAYIQGTSAGLASLLLDPSENMEVLDLAAA 263
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403
PGGKT ++A+ ++ G + A+DI++ RL ++ E V +V AD + DN
Sbjct: 264 PGGKTSHLAALMNNTGQIKALDISQSRLDLVQENLLRLGVKNV-SLKKADASKYQDNK-- 320
Query: 404 KCDKVLLDAPCSGLGVLS 421
K D++L D PCSGLG+++
Sbjct: 321 KYDRILADLPCSGLGLIA 338
>gi|427736995|ref|YP_007056539.1| ribosomal RNA small subunit methyltransferase RsmB [Rivularia sp.
PCC 7116]
gi|427372036|gb|AFY55992.1| ribosomal RNA small subunit methyltransferase RsmB [Rivularia sp.
PCC 7116]
Length = 459
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 113/339 (33%), Positives = 167/339 (49%), Gaps = 32/339 (9%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQ-ILRIGFYE 160
R DL + + RLVT++V G++R +R LD +I L + S +PLLL+ IL +G Y+
Sbjct: 29 LRKVDLPNNERRLVTELVYGSVRRQRTLDAIIDKLARKK---SHQQPLLLRCILHLGLYQ 85
Query: 161 I-VKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGND--- 216
+ + +P A V+ V+LAK G VNG+LR + L++ L + EG +
Sbjct: 86 LQFQERIPDSAAVNTTVQLAKDNGFSGLSGFVNGLLRSYIRLQEE----LQQKEGEETKT 141
Query: 217 ---------RAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN--- 264
Q+ L +YS P W+V W + G E KL W N P+ LR N
Sbjct: 142 NKIIPIKLPEKQSERLGILYSFPDWVVNIWVEQFGFSETEKLCEWMNQTPNIDLRVNQLC 201
Query: 265 -SRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAG 323
S + V A ++ ++P+ L + +R+ + EG VQD SA
Sbjct: 202 SSIEEVETALKNQGISSQRIPN-----LPQALRLLNSPGAIKNLPGFNEGWWTVQDSSAQ 256
Query: 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV 383
LV +++PQP + I+D CAAPGGKT ++A + G +YA D + RLR L + + +
Sbjct: 257 LVSYLLNPQPHEVIIDACAAPGGKTTHIAELMGDTGQIYACDRTESRLRKLQQNTQRLNL 316
Query: 384 NSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
SV D R+ DKVLLD PCSGLG L +
Sbjct: 317 KSV-EVCLGDSRSLTQFEK-SADKVLLDVPCSGLGTLHR 353
>gi|425464664|ref|ZP_18843974.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9809]
gi|389833279|emb|CCI22350.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9809]
Length = 450
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 118/338 (34%), Positives = 168/338 (49%), Gaps = 17/338 (5%)
Query: 90 DNEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
D Y +R L L+ D L T+IV G +R +R LD L+ L +KT +
Sbjct: 16 DRSSAYPDRALDRHLSASSLNCLDKALTTEIVYGIMRRQRTLDALLDRL--GKKTAAQQP 73
Query: 148 PLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
P L +IL IG Y++ L +PP A V+ V L K++ +VNG+LR+ + L N
Sbjct: 74 PDLRRILHIGLYQLRYLSQIPPSAAVNTAVELTKISHLGKLAAVVNGMLRQYLRLTANGD 133
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
PL E A L ++S P W+V+ W E +L W N P +R N
Sbjct: 134 DPLLLPENT----ASRLGILHSFPDWLVQLWLDRFSVTETEQLCQWFNRSPDLDIRINPL 189
Query: 267 KGVTRADLVMQLNLLKVP-HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLV 325
K +R L +L + H L L L R+ +GL N+ + + G +QD SA LV
Sbjct: 190 K-TSREALENELESANITFHHLKLPL--ACRLTSGLGNIERLEGFRAGNYTLQDISAQLV 246
Query: 326 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385
++DPQPG++I+D CAAPGGKT ++A + +G + A D RLR L K + +
Sbjct: 247 TYLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQTASRLRQLEANIKRLDLKA 306
Query: 386 VIRTIH-ADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
+ IH D R + D+VL+DAPCSGLG L K
Sbjct: 307 I--EIHLGDSRDRPQWCGI-ADRVLIDAPCSGLGTLHK 341
>gi|433446078|ref|ZP_20410209.1| ribosomal RNA small subunit methyltransferase B [Anoxybacillus
flavithermus TNO-09.006]
gi|432000823|gb|ELK21715.1| ribosomal RNA small subunit methyltransferase B [Anoxybacillus
flavithermus TNO-09.006]
Length = 446
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 106/322 (32%), Positives = 176/322 (54%), Gaps = 16/322 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
T +L +D+ L+T++V GTI+ R LD+ + +EP + +LR+ Y++
Sbjct: 30 IETNELSAQDVALLTELVYGTIQRRDTLDYYLQPFIK-----GKIEPWVHLLLRMSLYQM 84
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
V LD +P AV+ E V +AK G +LVNGILR V + SL K D ++
Sbjct: 85 VYLDRIPDRAVLFEAVEIAKRRGHRGIASLVNGILRS-VQRQGLRSLDDIK----DESER 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
A+AT SHPVW+VRRW + G +E ++ NN P + R N + VT +++ +L
Sbjct: 140 LAIAT--SHPVWLVRRWIEQFGFDETKRMCEVNNFPPEQTARVNVMR-VTVEEVIDRLKE 196
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ S + I++ G N + + +EGL +QDES+ LV + P ++DC
Sbjct: 197 EGIEAIPSSIVPIGIKITKG--NAAKTSVFREGLITIQDESSMLVAYALSPNETDVVLDC 254
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
CAAPGGKT ++A ++ +G V A+DI+ +++++ + AK ++++ +
Sbjct: 255 CAAPGGKTTHIAERMNNRGRVVALDIHDHKVKLIEQQAKRLGLSNIEAKQLDSRQAHTQF 314
Query: 401 STVKCDKVLLDAPCSGLGVLSK 422
+T D++L+DAPCSGLGV+ +
Sbjct: 315 ATETFDRILVDAPCSGLGVIRR 336
>gi|425445544|ref|ZP_18825572.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9443]
gi|389734455|emb|CCI01900.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9443]
Length = 446
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 117/337 (34%), Positives = 166/337 (49%), Gaps = 15/337 (4%)
Query: 90 DNEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
D Y +R L L+ D L T+IV G IR +R LD L+ L +KT +
Sbjct: 16 DRSSAYPDRALDRHLSASSLNCLDKALTTEIVYGIIRRQRTLDALLDRL--GKKTAAQQP 73
Query: 148 PLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
P L +IL IG Y++ L +PP A V+ V L K++ +VNG+LR+ + L N
Sbjct: 74 PDLRRILHIGLYQLRYLSQIPPSAAVNTAVELTKISHLGKLAAVVNGMLRQYLRLTANGD 133
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
PL E A L ++S P W+V+ W E +L W N P +R N
Sbjct: 134 DPLILPENT----ASRLGILHSFPDWLVQLWLDRFSVTETEQLCQWFNRSPDLDIRINPL 189
Query: 267 KGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVV 326
K +R L +L + L L R+ +GL N+ + + G +QD SA LV
Sbjct: 190 K-TSREALENELESANITFN-HLKLPLACRLTSGLGNIERLEGFRAGNYTLQDISAQLVT 247
Query: 327 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV 386
++DPQPG++I+D CAAPGGKT ++A + +G + A D RLR L K + ++
Sbjct: 248 YLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQTASRLRQLEANIKRLDLKAI 307
Query: 387 IRTIH-ADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
IH D R + D+VL+DAPCSGLG L K
Sbjct: 308 --EIHLGDSRDRPQWCGI-ADRVLIDAPCSGLGTLHK 341
>gi|17228315|ref|NP_484863.1| sun protein [Nostoc sp. PCC 7120]
gi|17130165|dbj|BAB72777.1| sun protein [Nostoc sp. PCC 7120]
Length = 449
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 113/326 (34%), Positives = 168/326 (51%), Gaps = 16/326 (4%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQ-ILRIGFY 159
+ +L D D RLVT+++ G++R +R LD +I L K S +P L+ IL +G Y
Sbjct: 28 ALQKANLSDIDRRLVTELLYGSVRRQRTLDFIIDQLA---KKKSHQQPTELRSILHLGLY 84
Query: 160 EI-VKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS--LPLPKLEGND 216
++ + +P A V+ V LAK G VNG+LR+ + L + + L LP+
Sbjct: 85 QLRYQERIPASAAVNTTVELAKDNGFAGLTGFVNGLLRQYIRLAEASPDFLELPE----- 139
Query: 217 RAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM 276
L ++S P W+++ W + LG E KL W N P+ LR N + A++
Sbjct: 140 -NPVERLGILHSFPDWIIKVWWEQLGLTETEKLCEWMNQTPTLDLRVNPLLA-SVAEVET 197
Query: 277 QLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 336
L V HL + +R+ ++ + +G VQD SA LV ++DPQPG+
Sbjct: 198 ALKSAGVLARPIPHLPQALRLIGNNGSIQKLPGFSQGWWIVQDASAQLVGHLLDPQPGEV 257
Query: 337 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396
I+D CAAPGGKT ++A + +G V+A D RLR L E A+ ++S+ I D R
Sbjct: 258 IIDACAAPGGKTTHIAELMKDEGKVWAGDRTASRLRKLKENAQRLNLHSIEICI-GDSRN 316
Query: 397 FADNSTVKCDKVLLDAPCSGLGVLSK 422
V D+VLLDAPCSGLG L +
Sbjct: 317 LPQFYDV-ADRVLLDAPCSGLGTLHR 341
>gi|323701798|ref|ZP_08113469.1| sun protein [Desulfotomaculum nigrificans DSM 574]
gi|333923478|ref|YP_004497058.1| sun protein [Desulfotomaculum carboxydivorans CO-1-SRB]
gi|323533334|gb|EGB23202.1| sun protein [Desulfotomaculum nigrificans DSM 574]
gi|333749039|gb|AEF94146.1| sun protein [Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 453
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 101/313 (32%), Positives = 160/313 (51%), Gaps = 11/313 (3%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D T+I G +R +D ++ ++ ++ + ILR+G Y+I+ + +P
Sbjct: 41 DRAFATEITYGVLRNLNTIDWVLAHFL--KQPLAAQTVWVRNILRMGTYQIMFMPRVPDS 98
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A +E+V LAK GA VNG+LR + + P P+ D ++ YSH
Sbjct: 99 AACNESVELAKKYGHTGAAKFVNGVLRNVARQQGELDFPDPQESPIDY-----ISLKYSH 153
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSL 289
P W+V RW K G ++ + L NN ++R N+ K + R DL +L V ++
Sbjct: 154 PTWLVERWLKEFGFDQTVALCKANNHPAPNTIRTNTLK-INRTDLKARLEFEGVETRVTK 212
Query: 290 HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 349
+ E + + G + +EGL VQDES+ LV ++P G I+D +APGGKT
Sbjct: 213 YAPEGLHL-NGFLSYQSLPSFQEGLFQVQDESSMLVAHALNPASGARIIDVASAPGGKTT 271
Query: 350 YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 409
++A + +G + A+DI+ +L ++ E + +NS IRT+ AD R T D VL
Sbjct: 272 HLAQLMKDRGEIVAVDIHPHKLELIKENCQRLGINS-IRTLLADARCLPAEYTNWADYVL 330
Query: 410 LDAPCSGLGVLSK 422
+DAPCSGLGVL +
Sbjct: 331 VDAPCSGLGVLRR 343
>gi|399924362|ref|ZP_10781720.1| 16S rRNA methyltransferase B [Peptoniphilus rhinitidis 1-13]
Length = 432
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 103/340 (30%), Positives = 168/340 (49%), Gaps = 34/340 (10%)
Query: 94 GYVERTLGFRTKD-LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQ 152
++E +L K +D+RD V +I G +R R YLD++I + + + F+ + ++L
Sbjct: 20 AFLEESLEILKKSRIDERDYNFVKEITTGVVRNRSYLDYVIKI--NSKIKFNRIHRIILS 77
Query: 153 ILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPK 211
IL + Y++ LD +P Y++VDE+V LAK+ G+ NGILR + +P K
Sbjct: 78 ILEMAIYQMYFLDKVPEYSIVDESVNLAKIYGNKGSIAFTNGILRAI----SKEDVPQVK 133
Query: 212 LEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR 271
+ + L+T YSHP + + G++ KL+ NN PSF++R N+ K R
Sbjct: 134 I----KNSIDNLSTFYSHPKFYTEYFYNNYGEDFTKKLLKANNEKPSFTIRVNTLK-TNR 188
Query: 272 ADLVMQLNLLKVPHELSLHLDEFIRVKTGLQN---------VIQAGLLKEGLCAVQDESA 322
+L+ SL D F T +N +I + G VQD +
Sbjct: 189 EELIK-----------SLTNDGFEIEDTNFKNAINILNPRGIIDTKYFENGEFYVQDLGS 237
Query: 323 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ 382
LV ++P ++D CAAPGGK+ ++A + G + A D +K +++++ E A+
Sbjct: 238 ILVSTFLNPSKDSKVLDLCAAPGGKSTHLAEIMENTGEIVACDKSKKKIKLIEENARRLG 297
Query: 383 VNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
V + I+T D + K D VL+DAPCSG G+ K
Sbjct: 298 VKN-IKTFVNDAEILNKDFLDKFDYVLVDAPCSGTGLYRK 336
>gi|298492855|ref|YP_003723032.1| sun protein ['Nostoc azollae' 0708]
gi|298234773|gb|ADI65909.1| sun protein ['Nostoc azollae' 0708]
Length = 446
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 109/321 (33%), Positives = 163/321 (50%), Gaps = 18/321 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI-VKLD 165
L D D RL+T++V G++R +R LD LI L K P L IL +GFY++ +
Sbjct: 34 LPDNDRRLMTELVYGSVRRQRTLDTLIDKLA--TKKAHQQPPELRTILHLGFYQLRYQEK 91
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A V+ V LAK VNG+LR+ + L +++S PL KL N L
Sbjct: 92 IPVSAAVNTTVELAKENGFSSLTGFVNGLLRQYLRLIESSSEPL-KLPENP---VERLGI 147
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN----SRKGVTRADLVMQLNLL 281
++S P W++ W + LG +E +L W N P+ LR N S + V A + +
Sbjct: 148 LHSFPDWIIEVWLEQLGLKETERLCAWMNKTPTIDLRVNILRSSLEKVESAFKSAGVLVR 207
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
+P+ L + +R+ + + +EG VQD SA LV ++DP+PG ++D C
Sbjct: 208 PIPY-----LPQGLRLISSTGPIKNLPGFREGWWTVQDSSAQLVSHLLDPKPGNVVIDVC 262
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401
AAPGGKT ++ + +G ++A D RLR L E + + S I D R +
Sbjct: 263 AAPGGKTTHIGELMGDKGKIWACDQTASRLRRLKENVQRLHLES-IEICTGDSRNLTQFN 321
Query: 402 TVKCDKVLLDAPCSGLGVLSK 422
+ D VLLDAPCSGLG + +
Sbjct: 322 NI-ADCVLLDAPCSGLGTMHR 341
>gi|390440194|ref|ZP_10228542.1| Ribosomal RNA small subunit methyltransferase B [Microcystis sp.
T1-4]
gi|389836395|emb|CCI32668.1| Ribosomal RNA small subunit methyltransferase B [Microcystis sp.
T1-4]
Length = 446
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 117/337 (34%), Positives = 166/337 (49%), Gaps = 15/337 (4%)
Query: 90 DNEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
D Y +R L L+ D L T+IV G IR +R LD L+ L +KT +
Sbjct: 16 DRSSAYPDRALDRHLSASSLNCLDKALTTEIVYGIIRRQRTLDALLDRL--GKKTAAQQP 73
Query: 148 PLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
P L +IL IG Y++ L +PP A V+ V L K++ +VNG+LR+ + L N
Sbjct: 74 PDLRRILHIGLYQLRYLSQIPPSAAVNTAVELTKISHLGKLAAVVNGMLRQYLRLTANGD 133
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
PL E A L ++S P W+V+ W E +L W N P +R N
Sbjct: 134 DPLILPENT----ASRLGILHSFPDWLVQLWLDRFSVTETEQLCQWFNRSPDLDIRINPL 189
Query: 267 KGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVV 326
K +R L +L + L L R+ +GL N+ + + G +QD SA LV
Sbjct: 190 K-TSREALENELESANITFN-HLKLPLACRLTSGLGNIERLEGFRAGNYTLQDISAQLVT 247
Query: 327 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV 386
++DPQPG++I+D CAAPGGKT ++A + +G + A D RLR L K + ++
Sbjct: 248 YLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQTASRLRQLEANIKRLDLKAI 307
Query: 387 IRTIH-ADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
IH D R + D+VL+DAPCSGLG L K
Sbjct: 308 --EIHLGDSRDRPQWCGI-ADRVLIDAPCSGLGTLHK 341
>gi|219669868|ref|YP_002460303.1| sun protein [Desulfitobacterium hafniense DCB-2]
gi|423074032|ref|ZP_17062766.1| ribosomal RNA small subunit methyltransferase B [Desulfitobacterium
hafniense DP7]
gi|219540128|gb|ACL21867.1| sun protein [Desulfitobacterium hafniense DCB-2]
gi|361855126|gb|EHL07128.1| ribosomal RNA small subunit methyltransferase B [Desulfitobacterium
hafniense DP7]
Length = 453
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 117/364 (32%), Positives = 184/364 (50%), Gaps = 31/364 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDD-RDLRLVTDIV 119
RA++ L RI+ A+A+L+ +K DL D R+ +L T +V
Sbjct: 7 RALAVQILRRIEEEKAYANLVMQKA------------------LHDLSDPRERQLATLLV 48
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAV-VDENVRL 178
GT++ R LD+ L H K S + + ILRI +I+ L P AV ++E V L
Sbjct: 49 NGTLKHRLTLDY--ALRRHLRKPLSQLPHEVRWILRISALQILYLSRIPAAVAINEGVEL 106
Query: 179 AKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWT 238
K + +LVN +LR+++ + P ++ R L+ YSHP WMV+RW
Sbjct: 107 TK-KQQGKYTSLVNSVLRRVLETGWDMLWP-----SKEKEPVRFLSLRYSHPEWMVKRWL 160
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVK 298
K G + L NN +R N+ K ++RADL +L V + + E + ++
Sbjct: 161 KRYGMADTEALCQANNEPAPVWIRTNTLK-ISRADLQARLEGEGVKVTIGERVPESLVIE 219
Query: 299 TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 358
++ + +EG VQDES+ L+ V++PQ GQ ++D C APGGKT ++A + Q
Sbjct: 220 D-FGSLDKLPSFQEGHFTVQDESSQLIAHVLNPQAGQKVLDACGAPGGKTTHLAQRMENQ 278
Query: 359 GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLG 418
G + A DI+ +++++ + A + ++IR D R A C KVL+DAPCSGLG
Sbjct: 279 GEILAFDIHPHKVKLIEDLAARLGI-TIIRAQAGDARELAGVKDASCHKVLVDAPCSGLG 337
Query: 419 VLSK 422
VL +
Sbjct: 338 VLRR 341
>gi|194333562|ref|YP_002015422.1| sun protein [Prosthecochloris aestuarii DSM 271]
gi|194311380|gb|ACF45775.1| sun protein [Prosthecochloris aestuarii DSM 271]
Length = 449
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 107/320 (33%), Positives = 164/320 (51%), Gaps = 30/320 (9%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L T++V G +R+R+ +D +I H + P L+ ILRIG Y++ LD +P +
Sbjct: 44 DSALATELVNGILRFRQSIDSIITAFYHHK--LKKASPFLVNILRIGVYQLRYLDRIPDW 101
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A V + V LA+ +VNG+LR + N + LE + Q A AT SH
Sbjct: 102 AAVSQCVDLARKYKGQHIARIVNGVLRSVAA---NPQKTVSSLEMQNPLQQLAAAT--SH 156
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSL 289
P WM+ RW G++ ++ +NN+ P F LR N+ K A +LK + S+
Sbjct: 157 PEWMLERWMARYGEDRTRRVTSYNNTPPLFGLRINTLKTNKEA-------MLKAFADASV 209
Query: 290 HLDEFIRVKTGLQNVI-------QAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
EFI +TGL + + + GL VQ+ L ++DP+ G++++D CA
Sbjct: 210 ---EFI--ETGLPSFLLTKDFHRTEPFITLGLLTVQNPVQALPCLLLDPEEGETVLDMCA 264
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402
APGGK+ ++A + G V A+D + R + E A + SVI TI +D R +
Sbjct: 265 APGGKSTFLAELMHNSGKVIAVDRYPNKCRTIRERASQMAI-SVITTIDSDARNVP--AG 321
Query: 403 VKCDKVLLDAPCSGLGVLSK 422
+ K+LLDAPCSG GVL++
Sbjct: 322 ISPAKILLDAPCSGTGVLAR 341
>gi|425468533|ref|ZP_18847544.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9701]
gi|389884794|emb|CCI34927.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9701]
Length = 450
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 117/337 (34%), Positives = 166/337 (49%), Gaps = 15/337 (4%)
Query: 90 DNEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
D Y +R L L+ D L T+IV G IR +R LD L+ L +KT +
Sbjct: 16 DRSSAYPDRALDRHLSASSLNCLDKALTTEIVYGIIRRQRTLDALLDRL--GKKTAAQQP 73
Query: 148 PLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
P L +IL IG Y++ L +PP A V+ V L K++ +VNG+LR+ + L N
Sbjct: 74 PDLRRILHIGLYQLRYLSQIPPSAAVNTAVELTKISHLGKLAAVVNGMLRQYLRLTANGD 133
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
PL E A L ++S P W+V+ W E +L W N P +R N
Sbjct: 134 DPLILPENT----ASRLGILHSFPDWLVQLWLDRFSVTETEQLCQWFNRSPDLDIRINPL 189
Query: 267 KGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVV 326
K +R L +L + L L R+ +GL N+ + + G +QD SA LV
Sbjct: 190 K-TSREALENELESANITFN-HLKLPLACRLTSGLGNIERLEGFRAGNYTLQDISAQLVT 247
Query: 327 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV 386
++DPQPG++I+D CAAPGGKT ++A + +G + A D RLR L K + ++
Sbjct: 248 YLLDPQPGETIIDACAAPGGKTTHIAELMGDRGKILACDQTASRLRQLEANIKRLDLKAI 307
Query: 387 IRTIH-ADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
IH D R + D+VL+DAPCSGLG L K
Sbjct: 308 --EIHLGDSRDRPQWCGI-ADRVLIDAPCSGLGTLHK 341
>gi|254423387|ref|ZP_05037105.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
PCC 7335]
gi|196190876|gb|EDX85840.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
PCC 7335]
Length = 491
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 125/362 (34%), Positives = 185/362 (51%), Gaps = 40/362 (11%)
Query: 75 GAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLI 133
GAFAD+ +++K KG+ LG + L +D LVT++V G++R RR LD LI
Sbjct: 52 GAFADVVIDRKLKGTQTGTQ------LGIQ---LSSQDKGLVTELVYGSVRRRRTLDALI 102
Query: 134 CLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVN 192
++ S LLQILR+GFY++ LD +P +AVVD V+LAK +VN
Sbjct: 103 DQF--GKRPASKQHRDLLQILRLGFYQLRYLDHVPVHAVVDTTVQLAKSQRLGKLSGVVN 160
Query: 193 GILRKLV--LLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLM 250
+LR+ + N + P +R R L ++S+P W++ W L ++ L
Sbjct: 161 AMLRQYAREAMPAANVIADPLKLPEERT--RRLGILHSYPDWIIDVWRSMLPDDQVEALC 218
Query: 251 VWNNSDPSFSLRAN-SRKGVTRA-DLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAG 308
+ N P LR N R+ ++ A L + +P E + +R+ T V Q
Sbjct: 219 EYFNRSPYLELRINLQRQSLSAAIALFADAGIEALPIE---GVPSALRLTTHAGAVTQLP 275
Query: 309 LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINK 368
EG AVQD SA LV ++DPQPG+ I+D CAAPGGK+L++A + +G V++ D
Sbjct: 276 GYAEGWWAVQDSSAQLVSYLLDPQPGEVIIDACAAPGGKSLHIAELMRNEGTVWSCD--- 332
Query: 369 GRLRILNETAKLHQV-----NSVIRTIHADLR---TFADNSTVKCDKVLLDAPCSGLGVL 420
R + T K+ Q +++R I D R TF D+VLLD PCSGLG L
Sbjct: 333 ---RTSSRTKKIQQNIDRLGATIVRPIMGDSRNQPTFLGQG----DRVLLDVPCSGLGTL 385
Query: 421 SK 422
++
Sbjct: 386 NR 387
>gi|337285416|ref|YP_004624889.1| sun protein [Thermodesulfatator indicus DSM 15286]
gi|335358244|gb|AEH43925.1| sun protein [Thermodesulfatator indicus DSM 15286]
Length = 456
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 104/317 (32%), Positives = 162/317 (51%), Gaps = 12/317 (3%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMP 167
D RD V++++ G +R YLD+++ + K M+P + LR+G Y+I +P
Sbjct: 42 DPRDRAFVSELINGVVRHLVYLDYVLSRVSR--KPLDKMDPEVRNALRLGAYQIFFTRVP 99
Query: 168 PYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIY 227
V E ++L K N VN +LR+L KD SLP +++ + LA Y
Sbjct: 100 VQVAVAETIKLVKPRRGQWIVNFVNAVLRELARRKDEISLPPKEMDPVEH-----LAIKY 154
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHEL 287
S+P W+V RW K G+EE L+ N P+ +RAN+ + VTR +L++ L VP
Sbjct: 155 SYPRWLVERWLKRFGEEETEALLKAGNERPTLVIRANTLR-VTRDNLLLFLKK-DVPEAS 212
Query: 288 SLHLD-EFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 346
+ I +K V K G VQDE++ LV ++ P+ G+ I+D CA GG
Sbjct: 213 PCRFSPDGIELKGFRGQVTSLKAFKFGWLQVQDEASQLVSYLLSPKEGERILDACAGVGG 272
Query: 347 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK-C 405
KT ++A + G +YA+D+ RL+ L E AK + + I I D + K
Sbjct: 273 KTTHLAQLMRNTGKIYAMDVLAWRLKRLEENAKRLGITN-IEVITGDATKSIEKLGGKFF 331
Query: 406 DKVLLDAPCSGLGVLSK 422
D++L+DAPC+G GV+ +
Sbjct: 332 DRILIDAPCTGTGVIRR 348
>gi|440755727|ref|ZP_20934929.1| ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa TAIHU98]
gi|440175933|gb|ELP55302.1| ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa TAIHU98]
Length = 450
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 119/338 (35%), Positives = 167/338 (49%), Gaps = 17/338 (5%)
Query: 90 DNEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
D Y +R L L+ D L T+IV GT+R +R LD L+ L +KT +
Sbjct: 16 DRSSAYPDRALDRHLSASSLNCLDKALTTEIVYGTMRRQRTLDALLDRL--GKKTAAQQP 73
Query: 148 PLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
P L +IL IG Y++ L +PP A V+ V L K++ +VNG+LR+ + L N
Sbjct: 74 PDLRRILHIGLYQLRYLSQIPPSAAVNTAVELTKISHLGKLAAVVNGMLRQYLRLTANGD 133
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
PL E A L ++S P W+V+ W E +L W N P +R N
Sbjct: 134 DPLLLPENT----ASRLGILHSFPDWLVQLWLDRFSVTETEQLCQWFNRSPDLDIRINPL 189
Query: 267 KGVTRADLVMQLNLLKVP-HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLV 325
K A L L + H L L L R+ +GL N+ + + G +QD SA LV
Sbjct: 190 KTSLEA-LENDLESANITFHHLKLPL--ACRLTSGLGNIERLEGFRAGNYTLQDISAQLV 246
Query: 326 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385
++DPQPG++I+D CAAPGGKT ++A + +G + A D RLR L K + +
Sbjct: 247 TYLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQTPSRLRQLEANIKRLDLKA 306
Query: 386 VIRTIH-ADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
+ IH D R + D+VL+DAPCSGLG L K
Sbjct: 307 I--EIHLGDSRDRPQWCGI-ADRVLIDAPCSGLGTLHK 341
>gi|425460298|ref|ZP_18839779.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9808]
gi|389827038|emb|CCI22011.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9808]
Length = 446
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 118/338 (34%), Positives = 167/338 (49%), Gaps = 17/338 (5%)
Query: 90 DNEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
D Y +R L L+ D L T+IV G +R +R LD L+ L +KT +
Sbjct: 16 DRSSAYPDRALDRHLSASSLNCLDKALTTEIVYGIMRRQRTLDALLDRL--GKKTAAQQP 73
Query: 148 PLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
P L +IL IG Y++ L +PP A V+ V L K++ +VNG+LR+ + L N
Sbjct: 74 PDLRRILHIGLYQLRYLSQIPPSAAVNTAVELTKISHLGKLAAVVNGMLRQYLRLTANGD 133
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
PL E A L ++S P W+V+ W E +L W N P +R N
Sbjct: 134 DPLLLPENT----ASRLGILHSFPDWLVQLWLDRFSVTETEQLCQWFNRSPDLDIRINPL 189
Query: 267 KGVTRADLVMQLNLLKVP-HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLV 325
K +R L L + H L L L R+ +GL N+ + + G +QD SA LV
Sbjct: 190 K-TSREALENDLESANITFHHLKLPL--ACRLTSGLGNIERLEGFRAGNYTLQDISAQLV 246
Query: 326 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385
++DPQPG++I+D CAAPGGKT ++A + +G + A D RLR L K + +
Sbjct: 247 TYLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQTPSRLRQLEANIKRLDLKA 306
Query: 386 VIRTIH-ADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
+ IH D R + D+VL+DAPCSGLG L K
Sbjct: 307 I--EIHLGDSRDRPQWCGI-ADRVLIDAPCSGLGTLHK 341
>gi|317129258|ref|YP_004095540.1| sun protein [Bacillus cellulosilyticus DSM 2522]
gi|315474206|gb|ADU30809.1| sun protein [Bacillus cellulosilyticus DSM 2522]
Length = 449
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/327 (30%), Positives = 178/327 (54%), Gaps = 23/327 (7%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ +L+ +D+ L+T++V GTI++++ LD L ++ +EP +L +LR+ Y++
Sbjct: 32 IKKSNLNQKDVPLLTELVYGTIQYQKLLD--FYLKPFSKRPLEKLEPWVLVLLRLTLYQM 89
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG-NDRAQ 219
V LD +P A V E V++AK G +VNGILR + LP+L+ D +
Sbjct: 90 VYLDRIPDRAAVHEAVQIAKKRGHQGISGMVNGILRSI------QRNELPQLDTVKDPVE 143
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
AL T SHP W+++RW G ++ ++ + N + P+ S+R N +++ L
Sbjct: 144 RLALKT--SHPEWLIKRWIDQYGIDKTEEMALANLTHPTHSVRVNELNASVE-EVIAALK 200
Query: 280 LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 339
+ E S ++ E + + G +VI +G VQDE + LV + P+ + ++D
Sbjct: 201 NEGIEAEQSKNIPESVLIYKG--SVINTKPFVDGWITVQDEGSMLVAHALSPKENERVLD 258
Query: 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---- 395
CAAPGGK+ ++A + G + ++DI+K ++ ++ + AK + S+I T D R
Sbjct: 259 ACAAPGGKSTHIAEKMKNSGQIVSLDIHKHKVGLIEKNAKRLNL-SIINTEQLDARQVSG 317
Query: 396 TFADNSTVKCDKVLLDAPCSGLGVLSK 422
F ++S D++L+DAPCSGLGV+ +
Sbjct: 318 QFEEHS---FDRILVDAPCSGLGVIQR 341
>gi|297617049|ref|YP_003702208.1| sun protein [Syntrophothermus lipocalidus DSM 12680]
gi|297144886|gb|ADI01643.1| sun protein [Syntrophothermus lipocalidus DSM 12680]
Length = 460
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 118/363 (32%), Positives = 183/363 (50%), Gaps = 26/363 (7%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ L R++ GA+A+L V+R L R +D + LVT++V
Sbjct: 12 REVALNLLYRVEHKGAYANLA--------------VDRELD-RYED-NGSQHALVTELVN 55
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GT+R R++LD ++ L K P L +ILR+ Y+++ +D +P YAVV+E V LA
Sbjct: 56 GTVRMRKHLDWVLNLFL--SKPIQKQNPWLREILRMSVYQLLFMDNVPEYAVVNEAVGLA 113
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
L G +VNG+LR ++ ++ +P P + N L+ YSHP WMV RW +
Sbjct: 114 GRKLDRGLSAVVNGVLRNVI--RNRGEIPYPDMYQN---PVEYLSVYYSHPEWMVARWVE 168
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKT 299
G + A +L+ NN P +LR N K V R +L L LS + V+
Sbjct: 169 RYGLKGACQLLEHNNVRPRVALRTNLLK-VDREELFRSLTDEGCRCTLSCLTPWGVWVEE 227
Query: 300 GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQG 359
+ + + +EG VQD+++ LV A P+ GQ + D A GGKT ++A + QG
Sbjct: 228 TGKPLRKLHSYREGWFYVQDDASMLVSAACAPEAGQVVYDLAAGVGGKTSHLAELMGNQG 287
Query: 360 LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGV 419
++ A++I ++ IL E + + +++ D + D VLLDAPCSGLGV
Sbjct: 288 IIRAVEILPKKVEILKENIRRLGI-TIVDIWTGDALGPLAPGWGEGDVVLLDAPCSGLGV 346
Query: 420 LSK 422
L +
Sbjct: 347 LRR 349
>gi|189347315|ref|YP_001943844.1| sun protein [Chlorobium limicola DSM 245]
gi|189341462|gb|ACD90865.1| sun protein [Chlorobium limicola DSM 245]
Length = 451
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 106/328 (32%), Positives = 162/328 (49%), Gaps = 35/328 (10%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
L+ D L T++V G +R R LD I H + P+L ILRIG Y+++ LD
Sbjct: 39 SLNQNDRALATELVNGVLRRRLTLDTFIGRYYHHR--YEKAAPVLKNILRIGAYQLIYLD 96
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSL-PLPKLEGNDRAQARAL 223
+P +A V+E+V LA+ LVN +LR + + L P K++ R L
Sbjct: 97 RIPHWAAVNESVSLARRYKGEHMAKLVNAVLRNITPETISADLDPSGKMKEIQR-----L 151
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
+ SHP W++ RW G+E A ++ +NN P R N K
Sbjct: 152 SITASHPEWLLERWIARYGKERAEAILAYNNRTPLTGFRINPLK--------------TT 197
Query: 284 PHE-LSLHLDEFIRV-KTGLQNVIQA-------GLLKEGLCAVQDESAGLVVAVVDPQPG 334
P E L+ + R+ K+GL+N + +K+GL VQ+ + GL + DPQPG
Sbjct: 198 PQEFLATENSKTARIGKSGLENFFLSTEFSCYESAIKQGLLTVQNPTQGLACLLCDPQPG 257
Query: 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 394
+++D CAAPGGK+ + + G + A+D+ +L+ L+E A + ++I T AD
Sbjct: 258 STLLDLCAAPGGKSTFCGELMQNTGNITAVDLYSQKLQKLSEHAGELGI-TIISTAEADA 316
Query: 395 RTFADNSTVKCDKVLLDAPCSGLGVLSK 422
RT+ +LLDAPCSG GVL++
Sbjct: 317 RTYLPEQPPAV--ILLDAPCSGTGVLAR 342
>gi|429765805|ref|ZP_19298085.1| ribosomal RNA small subunit methyltransferase B [Clostridium
celatum DSM 1785]
gi|429185658|gb|EKY26632.1| ribosomal RNA small subunit methyltransferase B [Clostridium
celatum DSM 1785]
Length = 438
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 108/319 (33%), Positives = 168/319 (52%), Gaps = 18/319 (5%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
DL+++D LVT++V GTIR ++ LD +I D S ME +L ILR+ Y++ LD
Sbjct: 33 DLNEKDRALVTELVYGTIRRKKTLDIIISNYVKD---ISLMEDGVLNILRMAIYQMHFLD 89
Query: 166 -MPPYAVVDENVRLAK-VALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
+P +A +E V L+K ++L+ + LVNGILR D+ +E +D + +
Sbjct: 90 KVPDFAACNEAVELSKNISLQ--SSKLVNGILRSYTKNPDD-------IEVSDSPIDKLV 140
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
T YS+ W +R K G+E K++ N+ P ++R N+ K ++ +L +
Sbjct: 141 YT-YSYEPWFIRMIYKQYGEENGRKILAGLNATPKVTVRVNTNKA-DFDEVYEKLEEMGY 198
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
E E I +K G ++ L +EG VQDESA LV ++D G ++D C+A
Sbjct: 199 DVEEGYACPEAIIIKGG-SSIENNELFREGYITVQDESAMLVAPLLDINEGDVVLDLCSA 257
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403
PGGKT + A L G G VYA D+++ +L ++ E + +N+V D
Sbjct: 258 PGGKTTHAAELLEGTGKVYAFDLHENKLSLITENVERLGLNNV-EVDAMDATKLNSKYVS 316
Query: 404 KCDKVLLDAPCSGLGVLSK 422
DKVL+D PCSGLG++ K
Sbjct: 317 MADKVLIDVPCSGLGIIRK 335
>gi|422304597|ref|ZP_16391940.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9806]
gi|389790263|emb|CCI13866.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9806]
Length = 446
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 116/337 (34%), Positives = 166/337 (49%), Gaps = 15/337 (4%)
Query: 90 DNEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
D Y +R L L+ D L T+IV G +R +R LD L+ L +KT +
Sbjct: 16 DRSSAYPDRALDRHLSASSLNCLDKALTTEIVYGIMRRQRTLDALLDRL--GKKTAAQQP 73
Query: 148 PLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
P L +IL IG Y++ L +PP A V+ V L K++ +VNG+LR+ + L N
Sbjct: 74 PDLRRILHIGLYQLRYLSQIPPSAAVNTAVELTKISHLGKLAAVVNGMLRQYLRLTANGD 133
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
PL E A L ++S P W+V+ W E +L W N P +R N
Sbjct: 134 DPLILPENT----ASRLGILHSFPDWLVQLWLDRFSVTETEQLCQWFNRSPDLDIRINPL 189
Query: 267 KGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVV 326
K +R L +L + L L R+ +GL N+ + + G +QD SA LV
Sbjct: 190 K-TSREALENELESANITFN-HLKLPLACRLTSGLGNIERLEGFRAGNYTLQDISAQLVT 247
Query: 327 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV 386
++DPQPG++I+D CAAPGGKT ++A + +G + A D RLR L K + ++
Sbjct: 248 YLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQTASRLRQLEANIKRLDLKAI 307
Query: 387 IRTIH-ADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
IH D R + D+VL+DAPCSGLG L K
Sbjct: 308 --EIHLGDSRDRPQWHGI-ADRVLIDAPCSGLGTLHK 341
>gi|425454955|ref|ZP_18834680.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9807]
gi|389804235|emb|CCI16917.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9807]
Length = 446
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 116/337 (34%), Positives = 166/337 (49%), Gaps = 15/337 (4%)
Query: 90 DNEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
D Y +R L L+ D L T+IV G +R +R LD L+ L +KT +
Sbjct: 16 DRSSAYPDRALDRHLSASSLNCLDKALTTEIVYGIMRRQRTLDALLDRL--GKKTAAQQP 73
Query: 148 PLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
P L +IL IG Y++ L +PP A V+ V L K++ +VNG+LR+ + L N
Sbjct: 74 PDLRRILHIGLYQLRYLSQIPPSAAVNTAVELTKISHLGKLAAVVNGMLRQYLRLTANGD 133
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
PL E A L ++S P W+V+ W E +L W N P +R N
Sbjct: 134 DPLILPENT----ASRLGILHSFPDWLVQLWLDRFSVTETEQLCQWFNRSPDLDIRINPL 189
Query: 267 KGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVV 326
K +R L +L + L L R+ +GL N+ + + G +QD SA LV
Sbjct: 190 K-TSREALENELESANITFN-HLKLPLACRLTSGLGNIERLEGFRAGNYTLQDISAQLVT 247
Query: 327 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV 386
++DPQPG++I+D CAAPGGKT ++A + +G + A D RLR L K + ++
Sbjct: 248 YLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQTASRLRQLEANIKRLDLKAI 307
Query: 387 IRTIH-ADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
IH D R + D+VL+DAPCSGLG L K
Sbjct: 308 --EIHLGDSRDRPQWCGI-ADRVLIDAPCSGLGTLHK 341
>gi|407977638|ref|ZP_11158475.1| 16S rRNA methyltransferase B [Bacillus sp. HYC-10]
gi|407415891|gb|EKF37472.1| 16S rRNA methyltransferase B [Bacillus sp. HYC-10]
Length = 447
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 94/323 (29%), Positives = 174/323 (53%), Gaps = 16/323 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ ++L D+D L+T++V GT++ + LD+++ K + P ++Q+LR+ Y++
Sbjct: 32 MKEQELSDQDKPLLTELVYGTLQNKLALDYMLTPFV---KKPQKVAPWVMQLLRMSLYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
V L+ +P A + E V L K G +LVNG+LR + +P + +
Sbjct: 89 VYLEKIPDRAAIHEAVELTKKRGHKGISSLVNGVLRSV------QREGVPSFDAI-KDPV 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
+ L+ SHP+W+++ W + G E A + + P +LR N R RA L +L
Sbjct: 142 KRLSVETSHPLWLIQEWVEAYGFEAAESMCRIHLVPPKQTLRVN-RMKTDRAALQQELMD 200
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ EL ++ +++ G +++ +EG +QDES+ LV +DPQPG+ + D
Sbjct: 201 AGIETELGDLSEDALKLMKG--SIVATPFFQEGFVTIQDESSMLVARALDPQPGEMVFDA 258
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
CAAPGGK+ ++A ++ +G + ++D+++ +++++ + AK + I D R +D
Sbjct: 259 CAAPGGKSTHIAERMNDEGKIVSLDLHEHKVKLIKQAAKRLNLTK-IEAKALDARKASDA 317
Query: 401 -STVKCDKVLLDAPCSGLGVLSK 422
S D++L+DAPCSG GV+ +
Sbjct: 318 YSEASFDRILIDAPCSGFGVIRR 340
>gi|157692254|ref|YP_001486716.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus pumilus
SAFR-032]
gi|157681012|gb|ABV62156.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus pumilus
SAFR-032]
Length = 447
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 176/323 (54%), Gaps = 16/323 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ KDL D+D L+T++V GT++ + LD+++ K + P ++Q+LR+ Y++
Sbjct: 32 MKDKDLADQDKPLLTELVYGTLQNKLALDYMLAPFV---KKPQKVAPWVMQLLRMSLYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
V L+ +P A + E V L K G +LVNG+LR + +P + + +
Sbjct: 89 VYLEKIPDRAAIHEAVELTKKRGHKGISSLVNGVLRSV------QREGVPAFD-DIKDPV 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
+ L+ SHP+W+V+ W + G E + + P +LR N R RA L +L
Sbjct: 142 KRLSIETSHPLWLVQEWVQSYGFEATESMCRIHLVPPKQTLRVN-RIKTDRAALKQKLLD 200
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ EL ++ +++ G +++ +EG +QDES+ LV +DPQPG++++D
Sbjct: 201 AGIETELGDLSEDALKLMKG--SIVSTPSFQEGYVTIQDESSMLVARALDPQPGETVLDA 258
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
CAAPGGK+ ++A ++ +G + ++D+++ +++++ + AK + I D R D+
Sbjct: 259 CAAPGGKSTHIAERMNDEGQIVSLDLHEHKVKLIKQAAKRLNLTQ-IEAKALDARKAKDD 317
Query: 401 -STVKCDKVLLDAPCSGLGVLSK 422
S D++L+DAPCSG GV+ +
Sbjct: 318 YSEASFDRILIDAPCSGFGVIRR 340
>gi|164687800|ref|ZP_02211828.1| hypothetical protein CLOBAR_01444 [Clostridium bartlettii DSM
16795]
gi|164603075|gb|EDQ96540.1| ribosomal RNA small subunit methyltransferase B [Clostridium
bartlettii DSM 16795]
Length = 441
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 111/324 (34%), Positives = 175/324 (54%), Gaps = 17/324 (5%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQIL-RIGFYE 160
F+ +LD+RD T+I+ G + + YLD++I L K S+ L ++IL R+G Y+
Sbjct: 29 FKDCNLDNRDRGFATEIIYGVVENKIYLDYIIDKLS---KIKSNKLNLKVKILLRMGIYQ 85
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
I+ LD + YA V+E V L K AG VN +LR ++ K++ + +++ D
Sbjct: 86 ILFLDSVSDYAAVNETVNLTKKLDNRSAG-FVNAVLRNVIRQKED----IGEVKIKDTVD 140
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
LAT YS+ W+VR W G+E L+ N PS LR N+ K TR +L+ L
Sbjct: 141 N--LATKYSYNKWIVRNWISNFGREFTEDLLEANTERPSIYLRVNTLK-TTRDELIKLLE 197
Query: 280 LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 339
+V E +DE I+V L+N+ L K+GL VQD S+ LV +++PQ ++D
Sbjct: 198 EQEVNCEKVPFMDEAIKV-NNLKNIENNELYKKGLFTVQDISSMLVGKILNPQKDTKVLD 256
Query: 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRIL-NETAKLHQVNSVIRTIHADLRTFA 398
C+APGGKT ++A+ + G V + DI + +++++ N +L N ++ D
Sbjct: 257 VCSAPGGKTTHIATLMENSGQVISRDIFEHKIKLIQNSVNRLGLKNVDVQLF--DALNLD 314
Query: 399 DNSTVKCDKVLLDAPCSGLGVLSK 422
+S K D VL D PCSGLG++ +
Sbjct: 315 KDSIDKFDSVLADVPCSGLGIIKR 338
>gi|389815939|ref|ZP_10207176.1| ribosomal RNA small subunit methyltransferase B [Planococcus
antarcticus DSM 14505]
gi|388465433|gb|EIM07750.1| ribosomal RNA small subunit methyltransferase B [Planococcus
antarcticus DSM 14505]
Length = 450
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 173/313 (55%), Gaps = 22/313 (7%)
Query: 114 LVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVV 172
L+T+I GT++ + LD+ + + +EP + +LR+ Y+IV LD +P +AVV
Sbjct: 48 LLTEITYGTLQHQMTLDYYL-----EPYLKGKIEPWVKTLLRLSLYQIVYLDRIPAHAVV 102
Query: 173 DENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQARALATIYSHP 230
E V +AK G ++VNG+LR + ++ N++ P ++ SHP
Sbjct: 103 HEAVEIAKRRGHGGVASVVNGVLRSVQRNGVRSFNTISDP---------YEKISIETSHP 153
Query: 231 VWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLH 290
+WM+RRW + G E+ ++ + NN P ++R N+ + T +++ L +V S
Sbjct: 154 IWMIRRWAEQFGLEKTREMALENNKTPLQTVRVNTARA-TVEEVIEMLESEEVEAVSSKL 212
Query: 291 LDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLY 350
+ E + + G + ++G +QDES+ L + +PG +++D CAAPGGKT +
Sbjct: 213 IPECLVITNG--QPARTATFEKGFITIQDESSMLPAYALQVKPGMTVLDMCAAPGGKTTH 270
Query: 351 MASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVL 409
+A ++ G +YA+D+++ ++++++E A + +SVI TI D + + K D++L
Sbjct: 271 IAEKMNNNGTLYALDLHQHKVKLIDENA-VRLGHSVIETIVGDGKQSVERFGEEKFDRIL 329
Query: 410 LDAPCSGLGVLSK 422
+DAPCSGLGV+ +
Sbjct: 330 VDAPCSGLGVIKR 342
>gi|86605784|ref|YP_474547.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
JA-3-3Ab]
gi|86554326|gb|ABC99284.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
JA-3-3Ab]
Length = 448
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 116/331 (35%), Positives = 167/331 (50%), Gaps = 30/331 (9%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQ-ILRIGFYEIVKLD-MPP 168
D LV+++V G R RR LD LI + + +PL L+ IL +GFY++ LD +PP
Sbjct: 38 DCHLVSELVYGITRRRRTLDALIDCFA---RRPAHQQPLDLRLILYLGFYQLAFLDHIPP 94
Query: 169 YAVVDENVRLAKVALRPGAGNL---VNGILR--KLVLLKDNNSLPLPKLEGN-DRAQARA 222
A + +V LA+ G G+L VNGILR + L PL L+ +A
Sbjct: 95 RAAIHTSVELARQV---GLGSLTGVVNGILRAYQRQALDGAEKDPLKPLQDTLPTDPIQA 151
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL---VMQLN 279
L +S P W+VR W + LG E +L W N P LR N RAD+ + L
Sbjct: 152 LGIRHSFPDWLVRLWWERLGPAETEQLCAWFNQPPHLDLRVNP----LRADVDKVIQALA 207
Query: 280 LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 339
+P + +R+ ++ +G +VQD SA VV +DPQPG+ ++D
Sbjct: 208 EAGIPASPIPEVPGALRLGQHAGDITALPGFAQGWWSVQDASAQQVVHYLDPQPGERVID 267
Query: 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 399
CCAAPGGKT +MA + +G ++A+D + RLR L E + ++S IR + DL +
Sbjct: 268 CCAAPGGKTTHMAEQMQDRGEIWALDRHPHRLRRLEENVQRLGLSS-IRPLAIDLLSLDA 326
Query: 400 NSTV--------KCDKVLLDAPCSGLGVLSK 422
+ D+VLLDAPCSGLG L +
Sbjct: 327 AAEPPAPLPPWQSADRVLLDAPCSGLGTLHR 357
>gi|357040454|ref|ZP_09102241.1| sun protein [Desulfotomaculum gibsoniae DSM 7213]
gi|355356545|gb|EHG04331.1| sun protein [Desulfotomaculum gibsoniae DSM 7213]
Length = 466
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 103/313 (32%), Positives = 166/313 (53%), Gaps = 11/313 (3%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D +T++V GT+R + LD L + ++ + + ILR+G Y+I+ +D +P
Sbjct: 42 DRAFITELVYGTLRTQNTLD--WALSRYLRRSLPELTAAVRNILRLGTYQILFMDRVPDS 99
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A V+E+ LA+ G VNG+LR LV K + P P D Q AL +SH
Sbjct: 100 AAVNESAILARRHGHEGIVKFVNGVLRNLVRGKKQLNYPDPN---EDPVQYIALR--HSH 154
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSL 289
P W+VRRW G E L NN ++R N+ K + A+L+ +L L V
Sbjct: 155 PAWLVRRWLNDFGFAETEALCAANNQPAPNTVRVNTLK-TSAAELIEKLATLGVKATRGQ 213
Query: 290 HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 349
+ + ++++ G ++ KEGL QDES+ LV V P PG ++D +APGGK
Sbjct: 214 YAVDCLQLQ-GFVSLGGLAPFKEGLLQAQDESSILVGQAVRPAPGSRVLDVASAPGGKAT 272
Query: 350 YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 409
++A + QG++ A+D+++ +++++ E + V +++ + AD R + T D VL
Sbjct: 273 HLAQLMQNQGVIMALDVHEHKIKLIEENCRRLGVQ-IVQPVLADARQIPEKYTGWADYVL 331
Query: 410 LDAPCSGLGVLSK 422
+DAPCSGLGVL +
Sbjct: 332 VDAPCSGLGVLRR 344
>gi|323340708|ref|ZP_08080960.1| RNA methyltransferase Sun [Lactobacillus ruminis ATCC 25644]
gi|417974294|ref|ZP_12615115.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus ruminis ATCC
25644]
gi|323091831|gb|EFZ34451.1| RNA methyltransferase Sun [Lactobacillus ruminis ATCC 25644]
gi|346329291|gb|EGX97589.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus ruminis ATCC
25644]
Length = 447
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 121/367 (32%), Positives = 189/367 (51%), Gaps = 45/367 (12%)
Query: 65 AVRLM-RIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGT 122
AV+L+ RI+ G++++L LN+ K S LD+RD+ L+T+IV G
Sbjct: 12 AVKLLERIEKNGSYSNLALNQTIKKS-----------------QLDERDVSLLTNIVYGV 54
Query: 123 IRWR----RYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVR 177
I+ + YLD I K +EP + ++L+ Y+ + LD +P AV +E +
Sbjct: 55 IQRKLTLEFYLDGFI-------KNRRKVEPWVYELLKTALYQQLYLDKIPKRAVFNETIE 107
Query: 178 LAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRW 237
+AKV G V GIL ++ + LP P GN + A ++ S P W+V +
Sbjct: 108 IAKVNGHEGIRRFVTGILHEI----ERKGLPDP---GNVKDSAEKISIESSTPKWLVEKL 160
Query: 238 TKYLGQEEAIKLMVWNNSDPSFSLRAN-SRKGVTRADLVMQLNLLKVPHELSLHLDEFIR 296
T+ LG E+ I L+ N P+ S+R N ++ V +A ++ KV L L +R
Sbjct: 161 TEELGFEKTISLLKSINEPPAQSIRVNLAKNTVHQAVSALEKEGFKVSKSLVSPLG--LR 218
Query: 297 VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS 356
V G + Q+ K GL VQDESA L V +D + ++D CAAPGGKT+ +A+ L
Sbjct: 219 VSGGF--IPQSDAYKRGLVTVQDESAMLAVDSMDVKSTDVVLDGCAAPGGKTMQIAAVLD 276
Query: 357 GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAPCS 415
G VYA+DI+ ++ ++ + A+L V + D R + + DKVL+DAPCS
Sbjct: 277 S-GRVYALDIHAHKVGLIEKNAELCGVTKYVTAKKTDARKAKEEFDEESFDKVLIDAPCS 335
Query: 416 GLGVLSK 422
GLG++ +
Sbjct: 336 GLGLMRR 342
>gi|389573303|ref|ZP_10163378.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus sp. M 2-6]
gi|388427000|gb|EIL84810.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus sp. M 2-6]
Length = 442
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 94/323 (29%), Positives = 174/323 (53%), Gaps = 16/323 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ K+L D+D L+T++V GT++ + LD+++ K + P ++Q+LR+ Y++
Sbjct: 27 MKEKELSDQDKPLLTELVYGTLQNKLALDYMLTPFV---KKPQKVAPWVMQLLRMSLYQM 83
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
V L+ +P A + E V L K G +LVNG+LR + +P + +
Sbjct: 84 VYLEKIPDRAAIHEAVELTKKRGHKGISSLVNGVLRSV------QREGVPSFDAI-KDPV 136
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
+ L+ SHP+W+V+ W + G E A + + P +LR N K R L +L
Sbjct: 137 KRLSIETSHPLWLVQEWVEAYGFEAAESMCRIHLVPPKQTLRVNQMKK-NRTALQQELMD 195
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ EL ++ +++ G +++ +EG +QDES+ LV +DPQPG+ ++D
Sbjct: 196 AGIETELGDLSEDALKLMKG--SIVSTPFFQEGFVTIQDESSMLVARALDPQPGEMVLDA 253
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
CAAPGGK+ ++A ++ +G + ++D+++ +++++ + AK + I D R +D+
Sbjct: 254 CAAPGGKSTHIAERMNDEGKIVSLDLHEHKVKLIKQAAKRLNLTH-IEAKALDARKASDH 312
Query: 401 -STVKCDKVLLDAPCSGLGVLSK 422
D++L+DAPCSG GV+ +
Sbjct: 313 YDDASFDRILIDAPCSGFGVIRR 335
>gi|220906120|ref|YP_002481431.1| sun protein [Cyanothece sp. PCC 7425]
gi|219862731|gb|ACL43070.1| sun protein [Cyanothece sp. PCC 7425]
Length = 443
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 113/331 (34%), Positives = 171/331 (51%), Gaps = 19/331 (5%)
Query: 96 VERTLGFRTKDL-DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQIL 154
VER+L R L ++R+ RL T++V G +R +R LD L+ L +K P L +L
Sbjct: 24 VERSL--RQHPLTEERERRLATELVYGCVRRQRTLDALVDQLA--KKPARQQPPDLRTLL 79
Query: 155 RIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLK-DNNSLPLPKL 212
+G Y++ L+ +P A V V L K G VNG+LR+ + + L LP
Sbjct: 80 HLGLYQLRYLNHIPANAAVHTTVELVKHRGLAGLAGFVNGLLRQYIRQSAGGDPLSLP-- 137
Query: 213 EGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANS-RKGVTR 271
D Q LA ++S+P W+V W + +G E +L W N PS LR N + + +
Sbjct: 138 --TDPVQQ--LALLHSYPDWIVANWMEQIGTTETDQLCQWLNRPPSIDLRINPLQTSIEQ 193
Query: 272 ADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
Q + V + L + +R+ + Q +G +VQD SA LV +++P
Sbjct: 194 VGSAFQSAGVSV--QPLAGLPQGLRLTEPSGAIEQLPGFAQGWWSVQDASAQLVSHLLNP 251
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
QPG+ I+D CAAPGGK+ ++A + +G+V+A D RL+ L + + ++NS IR
Sbjct: 252 QPGEVIIDACAAPGGKSTHIAELIGDKGIVWACDRTPSRLKKLEQNRQRLKLNS-IRICQ 310
Query: 392 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
D R T + D+VLLDAPCSGLG L +
Sbjct: 311 GDSRM--SEFTAQADRVLLDAPCSGLGTLHR 339
>gi|114566754|ref|YP_753908.1| hypothetical protein Swol_1228 [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114337689|gb|ABI68537.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 456
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 106/367 (28%), Positives = 182/367 (49%), Gaps = 30/367 (8%)
Query: 57 VSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVT 116
V+ R ++A + + GAFA+L K R DL D L+T
Sbjct: 9 VNKARIMAAEIVYEVMERGAFANLALAKA----------------LRNSDLSAADRHLLT 52
Query: 117 DIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL-DMPPYAVVDEN 175
+IV GT+R ++LD ++ L H P LL ILR Y+++ L +P YA+V++
Sbjct: 53 EIVNGTVRMIKHLDWVLELFLHS--PIKKQNPYLLSILRTALYQLMFLAKVPDYALVNDA 110
Query: 176 VRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVR 235
V +++ + + N +LR ++ D P +D ++ YSHP W+V+
Sbjct: 111 VEISRQKMGAKMAGVSNAVLRNIIRKLDKIKYP------DDPVSFYSI--YYSHPDWLVK 162
Query: 236 RWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFI 295
W LG + L+ +NNS LR N K +R +L+ +L V +LS I
Sbjct: 163 LWLDTLGTQACETLLAYNNSRSRVVLRCNPLK-CSREELIDKLEEEGVKAQLSPLTPWGI 221
Query: 296 RVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL 355
V+ Q + + K+G +Q+E++ L A+++P G+ ++D C GGKT ++A +
Sbjct: 222 VVEDNPQPIAETASFKKGYFYIQNEASMLAAAILNPPAGERVLDLCCGVGGKTTHLAEYM 281
Query: 356 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCS 415
+ QG V A++ +L +L + + + +++ + D+RT ++ VK +LLDAPCS
Sbjct: 282 NNQGEVLAVEFYAQKLELLRQNCQRLGL-GIVKDLEKDIRTL-NSKEVKARYLLLDAPCS 339
Query: 416 GLGVLSK 422
G GVL++
Sbjct: 340 GWGVLNR 346
>gi|23098962|ref|NP_692428.1| hypothetical protein OB1507 [Oceanobacillus iheyensis HTE831]
gi|22777190|dbj|BAC13463.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 448
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 96/338 (28%), Positives = 187/338 (55%), Gaps = 27/338 (7%)
Query: 96 VERTLGF---------RTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSM 146
+E+ GF + + L+++D RL+T++V G+++ + LD+ + K+ +
Sbjct: 16 IEKDHGFSNLLLNHELKQRQLNEKDERLLTEVVYGSLQHQMTLDYYLSKFV---KSKKKL 72
Query: 147 EPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNN 205
+ + +LR+ FY+++ L+ +P +AV+ E+V +AK G + VNG+LR L
Sbjct: 73 DIWVQSLLRMSFYQMIYLEKVPDHAVIHESVEIAKQRGHKGISSFVNGVLRSL------Q 126
Query: 206 SLPLPKL-EGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN 264
+P+L E D + A+ T SHP W+V+RW++ G E + N S+R
Sbjct: 127 RQGVPELTEIKDPIERIAIET--SHPEWLVKRWSEMYGMETTANMCRNNLEHHPLSIRIQ 184
Query: 265 SRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGL 324
+ +R D++ +L + S+ + I ++ G N+ + LLK+G +QD+S+ L
Sbjct: 185 PLR-TSREDVMEELKQSGIECRASIFSSQGIIIEKG--NIFRTNLLKDGKITIQDQSSML 241
Query: 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 384
V ++ +P +++D C+APGGK ++A + +G ++A D++ ++++++E A Q++
Sbjct: 242 VGEMLAVEPEMNVLDSCSAPGGKVTHVAEKMLDKGTIHAFDLHAKKIKLIDEKATTLQLS 301
Query: 385 SVIRTIHADLRTFADNSTVKC-DKVLLDAPCSGLGVLS 421
S++ D R AD + D++++DAPCSGLGV++
Sbjct: 302 SILAQ-KGDARKLADKYEKESFDRIVVDAPCSGLGVIN 338
>gi|365157094|ref|ZP_09353375.1| ribosomal RNA small subunit methyltransferase B [Bacillus smithii
7_3_47FAA]
gi|363625828|gb|EHL76839.1| ribosomal RNA small subunit methyltransferase B [Bacillus smithii
7_3_47FAA]
Length = 446
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 107/323 (33%), Positives = 170/323 (52%), Gaps = 26/323 (8%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLIC-LLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
DL D L+T++ GTI+ + LD+ + L H K++ + +LR+ Y++V L
Sbjct: 38 DLTGPDAGLLTELTYGTIQRKFTLDYFLAPFLKHKLKSW------VRNLLRLSLYQMVYL 91
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG-NDRAQARA 222
D +P AV+ E V +AK G +VNG+LR + LP L+ D + +
Sbjct: 92 DKVPDRAVIFEAVEIAKKRGHKGIAGMVNGVLRSI------QRKGLPALDAITDPVKRIS 145
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
+ T SHP W+V+RW + G E+ + N S P ++R N K RA++++ L
Sbjct: 146 IET--SHPEWLVKRWIRQFGLEKTKAMCETNLSVPVQTVRVNETKA-DRAEVLISLRQEG 202
Query: 283 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
E S L E IR+ G N + ++GL +QDES+ LV + +PG ++D CA
Sbjct: 203 FSAEESPILPEAIRILKG--NAAHSSAFQKGLMTIQDESSMLVAHAMKLEPGMVVLDACA 260
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA---KLHQVNSVIRTIHADLRTFAD 399
APGGKT +MA + G G VYA+D++ +++++ + A L ++S+ F
Sbjct: 261 APGGKTTHMAEKMQGTGKVYALDLHPHKIKLIEDNAVRLGLENISSLPLDSRKGGEKFPP 320
Query: 400 NSTVKCDKVLLDAPCSGLGVLSK 422
S D++L+DAPCSGLGVL +
Sbjct: 321 QS---FDRILVDAPCSGLGVLRR 340
>gi|403234848|ref|ZP_10913434.1| 16S rRNA methyltransferase B [Bacillus sp. 10403023]
Length = 447
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 116/366 (31%), Positives = 191/366 (52%), Gaps = 36/366 (9%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R+V+ L++I+ A++++L N+M + ++ +D+ L+T+IV
Sbjct: 7 RSVALEILLQIEKNQAYSNILL--------NQM--------IKKHEVKGKDVGLLTEIVY 50
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI+ R LD + + K +E + +LR+ Y++V LD +P A+ E V +A
Sbjct: 51 GTIQQRDTLDFYLTPFLKNTK---KLELWVKVLLRLSLYQMVYLDRVPERAIFFEAVEIA 107
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLP-LPKLEGNDRAQARALATIYSHPVWMVRRWT 238
K G +LVNG+LR + N LP L +++ D + A+ T SHP W+V RW
Sbjct: 108 KKRGHKGTASLVNGVLRSI----QRNGLPSLEQIK--DEVERIAIET--SHPNWLVTRWV 159
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHEL-SLHLDEFIRV 297
K +G EE K+ N + P + R N K TR +L+ LN V E+ S+ +D +
Sbjct: 160 KQIGIEETRKMCEVNCTPPEQTARVNGMK-TTREELIHMLNEDGVETEVGSVSIDAIKAI 218
Query: 298 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSG 357
+ L N KEG +QDES+ LV + + ++D CAAPGGKT ++A L
Sbjct: 219 RGNLAN---TKAFKEGYFTIQDESSMLVARALGVEKDDYVLDSCAAPGGKTTHIAQILQN 275
Query: 358 QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAPCSG 416
G V ++D++K ++++++E + +V T D R + V+ DK+L+DAPCSG
Sbjct: 276 TGKVISLDLHKHKIKLIDEAVTRLGLENV-ETKAFDSRKAGEIFEVQSFDKILVDAPCSG 334
Query: 417 LGVLSK 422
GV+ +
Sbjct: 335 FGVIRR 340
>gi|182420429|ref|ZP_02951648.1| ribosomal RNA small subunit methyltransferase B [Clostridium
butyricum 5521]
gi|237668664|ref|ZP_04528648.1| ribosomal RNA small subunit methyltransferase B [Clostridium
butyricum E4 str. BoNT E BL5262]
gi|182375715|gb|EDT73315.1| ribosomal RNA small subunit methyltransferase B [Clostridium
butyricum 5521]
gi|237657012|gb|EEP54568.1| ribosomal RNA small subunit methyltransferase B [Clostridium
butyricum E4 str. BoNT E BL5262]
Length = 438
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 110/320 (34%), Positives = 168/320 (52%), Gaps = 20/320 (6%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L+D+D L+T+IV G +R +R LD +I D K M+ +L ILR+ Y++ LD
Sbjct: 33 ELNDKDKALLTEIVYGVLRRKRTLDVIIANFVKDIKL---MDKNILNILRVAIYQMNFLD 89
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P YA +E V AK + LVNGILR D+ ++P K++ A
Sbjct: 90 KIPTYAACNEAVEEAK-EISENDSKLVNGILRSFTKNPDDINVPGNKID--------EYA 140
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
+S WM+R K G+ A K+M N+ P S+R N + D V + L ++
Sbjct: 141 YKFSFEPWMIRLLIKQYGENVAKKIMSGLNTIPKVSIRVNELN--SDYDEVYE-KLEEME 197
Query: 285 HELSLHL--DEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
+E+S + E I +K G +++ L KEG VQDESA LV ++D + G ++VD C+
Sbjct: 198 YEISEGVICPEAINIKGG-KSIENNPLFKEGKITVQDESAMLVAPLLDLKEGMTVVDLCS 256
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402
APGGKT ++A L G V A D+++ +L ++ E + + +V T D
Sbjct: 257 APGGKTTHIAEILGNTGKVLAFDLHESKLGLIKENCERLGITNVT-TFAQDATKLNAELV 315
Query: 403 VKCDKVLLDAPCSGLGVLSK 422
D+VLLD PCSGLG++ K
Sbjct: 316 ASTDRVLLDVPCSGLGIIRK 335
>gi|404491794|ref|YP_006715900.1| 16S rRNA (5-methyl-C967)-methyltransferase [Pelobacter carbinolicus
DSM 2380]
gi|77543940|gb|ABA87502.1| 16S rRNA (5-methyl-C967)-methyltransferase [Pelobacter carbinolicus
DSM 2380]
Length = 451
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 107/321 (33%), Positives = 166/321 (51%), Gaps = 15/321 (4%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
D+D RD L T++V G +R+R LD + LC K + +EP +L +LR+G Y+I++LD
Sbjct: 36 DMDVRDRALATELVYGVLRYRGRLDFALQQLC--RKPLAKVEPAVLNLLRLGCYQILQLD 93
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A V E V LA+ A +NGILR LV + LP P + R L
Sbjct: 94 RIPNHAAVFETVELARRLKLQRATGFINGILRGLV--RQAAQLPWPDRQ---RDPLDYLE 148
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
+ S P W+ RW G EEA L +++R N+ K + R L+ LN
Sbjct: 149 HVLSLPRWLAARWLDEFGAEEACALAQAMLKPAPYAIRTNTLK-IQREALLATLNASDCD 207
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
+ + E I ++ G + EG+ +QD+++ L+ +++PQPG+ I+D CAAP
Sbjct: 208 AVPTRFVPEGIYIRQGETRHLSGH--TEGIFQLQDQASMLISHLLNPQPGERILDACAAP 265
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA-DLRTFADN-ST 402
GGKT +MA+ + + A+D++ R+ ++ A + HA DL D
Sbjct: 266 GGKTTHMAALTDNRARIVALDLHPQRVDLITRGANRLGCQGI--EGHAWDLTGVPDFLEP 323
Query: 403 VKCDKVLLDAPCSGLGVLSKT 423
D++L+DAPCSGLGVL +
Sbjct: 324 ASFDRILVDAPCSGLGVLRRN 344
>gi|328952872|ref|YP_004370206.1| sun protein [Desulfobacca acetoxidans DSM 11109]
gi|328453196|gb|AEB09025.1| sun protein [Desulfobacca acetoxidans DSM 11109]
Length = 456
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 109/343 (31%), Positives = 170/343 (49%), Gaps = 11/343 (3%)
Query: 82 NKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEK 141
N G G +E+TL + L D L+ ++V G +RWR LD+ I + H +
Sbjct: 16 NVPGGAPGPFLDALIEQTLSDHPR-LSHPDRALLRELVTGVLRWRGRLDYAIGQVSH--Q 72
Query: 142 TFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVA-LRPGAGNLVNGILRKLV 199
+ + PL+L +LR+ Y+++ LD +P A V+E+V+LAK+ L P VN RKL
Sbjct: 73 PVNKLHPLVLNLLRLTTYQLLFLDRIPASAAVNESVKLAKIHRLPPALIGFVNAAARKLA 132
Query: 200 LLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSF 259
+ LP P++E ALA SHP W+ RW + LG E A K NN P
Sbjct: 133 TALPDLPLPDPEIE-----PVTALAVATSHPEWLAARWLERLGPEAAWKRAQANNLHPPL 187
Query: 260 SLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQD 319
S+R N+ ++ A L + L + E + + + Q+ + GL QD
Sbjct: 188 SIRVNTAL-ISPATLQVVLQTEGIATESGRFSPVGLTICSLKQSPFNLPSYQRGLWLFQD 246
Query: 320 ESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK 379
E+A L ++ PQPG I++ A GGKT ++A L G+G + A+D + R+ LN + +
Sbjct: 247 EAAQLATLLLQPQPGHGILEIGAGRGGKTTHLAQLLRGKGRILAVDHSLERMAALNRSRQ 306
Query: 380 LHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
+ V + + + D++L+DAPCSGLGVL +
Sbjct: 307 RLGLTGVDLLLTDATLSLPIQPEHRFDRILIDAPCSGLGVLRR 349
>gi|239826566|ref|YP_002949190.1| sun protein [Geobacillus sp. WCH70]
gi|239806859|gb|ACS23924.1| sun protein [Geobacillus sp. WCH70]
Length = 447
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 101/322 (31%), Positives = 170/322 (52%), Gaps = 14/322 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
T L +RD+RL+T+IV GTI+ R LD+ + K +E + +LR+ Y++
Sbjct: 32 IETHRLSERDVRLLTEIVYGTIQRRDTLDYYLTPFL---KKARKLERWVRVLLRLTLYQV 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD +P A + E V +AK G +LVNG++R + + PL K+E D +
Sbjct: 89 LYLDRIPDRAAIFEAVEIAKKRGHQGVASLVNGVMRAI---QRQGVPPLEKIE--DEVER 143
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
A+AT SHP+W+V+RW + G EE ++ N P + R N+ + +T + + +L
Sbjct: 144 LAVAT--SHPLWLVKRWVEQYGLEETKRMCETNLLPPKQTARVNTAR-ITVEEAIDKLKQ 200
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ L +E I+ K G N+ + G +QDES+ LV + P+ + ++D
Sbjct: 201 EGMEVVLGEVAEEAIQAKRG--NLAHTDAFRRGWITIQDESSMLVARALGPKEHERVLDS 258
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
CAAPGGK+ ++A ++ G V DI++ ++ ++ E AK Q+ ++ + R
Sbjct: 259 CAAPGGKSTHIAELMNNTGQVICADIHEHKVNLIEENAKRLQLTNISARVLDSRRLGEVF 318
Query: 401 STVKCDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 319 EREMFDKILVDAPCSGFGVIRR 340
>gi|425440910|ref|ZP_18821202.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9717]
gi|389718555|emb|CCH97514.1| Ribosomal RNA small subunit methyltransferase B [Microcystis
aeruginosa PCC 9717]
Length = 450
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 116/343 (33%), Positives = 165/343 (48%), Gaps = 27/343 (7%)
Query: 90 DNEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
D Y +R L L+ D L T+IV G +R +R LD L+ L +KT +
Sbjct: 16 DRSSAYPDRALDRHLSASSLNCLDKALTTEIVYGIMRRQRTLDALLDRL--GKKTAAQQP 73
Query: 148 PLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
P L +IL IG Y++ L +PP A V+ V L K++ +VNG+LR+ + L N
Sbjct: 74 PDLRRILHIGLYQLRYLSQIPPSAAVNTAVELTKISHLGKLAAVVNGMLRQYLRLTANGD 133
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
PL E A L ++S P W+V+ W E +L W N P +R N
Sbjct: 134 DPLLLPENT----ASRLGILHSFPDWLVQLWLDRFSVTETEQLCQWFNRSPDLDIRINPL 189
Query: 267 KGVTRA------DLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDE 320
K A + N LK+P R+ +GL N+ + + G +QD
Sbjct: 190 KTSLEALENELESANITFNYLKLPLA--------CRLTSGLGNIERLEGFRAGNYTLQDI 241
Query: 321 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKL 380
SA LV ++DPQPG++I+D CAAPGGKT ++A + +G + A D RLR L K
Sbjct: 242 SAQLVTYLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQTASRLRQLEANIKR 301
Query: 381 HQVNSVIRTIH-ADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
+ ++ IH D R + D+VL+DAPCSGLG L K
Sbjct: 302 LDLKAI--EIHLGDSRDRPQWHGI-ADRVLIDAPCSGLGTLHK 341
>gi|313888508|ref|ZP_07822175.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus
harei ACS-146-V-Sch2b]
gi|312845537|gb|EFR32931.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus
harei ACS-146-V-Sch2b]
Length = 430
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 96/334 (28%), Positives = 169/334 (50%), Gaps = 24/334 (7%)
Query: 95 YVERTLG-FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQI 153
++E +L + ++D+RD + +I G +R + YLD++I + + F+ + ++L I
Sbjct: 21 FLEESLEILKASNIDERDFAFIKEITTGVVRNKTYLDYVI--RENSKVRFNRIHKIILSI 78
Query: 154 LRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL 212
L + Y++ LD +P Y++VDE+V LAK+ G+ + NGILR + K L
Sbjct: 79 LEMAIYQMYFLDKVPDYSIVDESVNLAKIYGNKGSISFTNGILRSISKEK--------HL 130
Query: 213 EGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA 272
+ + L+T YSHP + + G+E KL+ NN P F++R N+ K + R
Sbjct: 131 QVTLKNSIDNLSTYYSHPRFYTEYFYDKYGEEFTKKLLKANNEKPPFTIRVNTLK-INRD 189
Query: 273 DLVMQLNLLKVPHELSLHLDEFIRVKT----GLQNVIQAGLLKEGLCAVQDESAGLVVAV 328
+L+ L E ++E V +I ++G VQD + LV
Sbjct: 190 ELIKNLT------ESGFDIEETTYVNALNVLNPNGIIDTEFFEKGHFYVQDLGSILVSTF 243
Query: 329 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 388
++P ++D CAAPGGKT +++ + G + + D +KG+++++ E A+ ++
Sbjct: 244 LNPSKDSKVLDLCAAPGGKTTHLSELMDNTGEIISCDKSKGKIKLIKENAERLGCTNISP 303
Query: 389 TIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
++ D R + K D VL+DAPCSG G+ K
Sbjct: 304 MVN-DARVLNEEFINKFDYVLVDAPCSGTGLYRK 336
>gi|374850909|dbj|BAL53885.1| ribosomal RNA small subunit methyltransferase B [uncultured
Acidobacteria bacterium]
gi|374851661|dbj|BAL54614.1| ribosomal RNA small subunit methyltransferase B [uncultured
Acidobacteria bacterium]
Length = 447
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 101/321 (31%), Positives = 160/321 (49%), Gaps = 11/321 (3%)
Query: 103 RTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIV 162
R L +RD RL ++V G +RW+R LDHLI + ++ ++ + LR+G Y++
Sbjct: 31 RVDRLPERDRRLAYELVLGVLRWQRQLDHLIA--HYSGRSPDRLDEPIRIALRLGLYQLR 88
Query: 163 KLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
L+ +P YA V+E V LAK P LVN +LR+ D P ++
Sbjct: 89 FLERIPAYAAVNEAVALAKRYGPPWGAGLVNAVLRRAASTPDER--PWERIAD----PIE 142
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
+ SHP W+VR+W G EEA+ LM NN P +R N T ++ L
Sbjct: 143 RVGVELSHPSWLVRKWMADFGTEEALALMRANNQAPPVVIRFNVLAAST-DEIARALARE 201
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
+ E S ++ RV++G + + + G +Q+E++ L+ VV P+PG +++ C
Sbjct: 202 GIEIEPSPYVPGAYRVRSGSLSP-NSEAWRRGWVYIQEEASQLIAHVVAPEPGMRVLEIC 260
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401
AAPG KT +MA+ + +G++ A D + RLR+L + A+ V +
Sbjct: 261 AAPGSKTTHMAALMGNEGMIVAGDRHLARLRVLKQLAERLCVRIAYPLVFEGRGPVPLLP 320
Query: 402 TVKCDKVLLDAPCSGLGVLSK 422
D+VL+DAPCSG G L +
Sbjct: 321 AQLFDRVLVDAPCSGTGTLRR 341
>gi|302392192|ref|YP_003828012.1| sun protein [Acetohalobium arabaticum DSM 5501]
gi|302204269|gb|ADL12947.1| sun protein [Acetohalobium arabaticum DSM 5501]
Length = 448
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 101/322 (31%), Positives = 167/322 (51%), Gaps = 13/322 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F+ +L D+D L T+++ G++R R +LD ++ ++ + M+ ILR+G Y+I
Sbjct: 31 FKKYNLADQDRGLATELIYGSLRMRNHLDWILNQFA--DRRVNKMDKWTRNILRLGLYQI 88
Query: 162 VKLDMPPYAVV-DENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
LD P AV +E V LAK GA VNGILR + L+ + + P+L+ N
Sbjct: 89 RFLDSIPDAVACNETVELAKDYQHSGAAGFVNGILRSI--LRSLDEIEFPQLKSNPVQHI 146
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R YS P WMV W K G E + + N PS +R N R VT +L L
Sbjct: 147 RYK---YSFPQWMVETWVKRYGVELTVDICSAFNQIPSKIIRQN-RLKVTAEELQADLAS 202
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ + E + + RV T ++ Q+ G +Q ++ + +++PQP ++D
Sbjct: 203 VGIETEAISEIPQAFRV-TNSSSLFQSNSFTAGYFQIQGLASIIAGHIMNPQPKDIVLDL 261
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
C+APGGKT ++A ++ QG + A D+++ +L ++ + ++RT D R+
Sbjct: 262 CSAPGGKTTHLAELMANQGEIVANDLHEDKLELIERNCNRLGIR-IVRTRAGDGRSLKFE 320
Query: 401 STVKCDKVLLDAPCSGLGVLSK 422
K D++L+DAPCSGLG+++K
Sbjct: 321 K--KFDRILVDAPCSGLGMIAK 340
>gi|226313315|ref|YP_002773209.1| ribosomal RNA small subunit methyltransferase [Brevibacillus brevis
NBRC 100599]
gi|226096263|dbj|BAH44705.1| probable ribosomal RNA small subunit methyltransferase
[Brevibacillus brevis NBRC 100599]
Length = 448
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 108/355 (30%), Positives = 183/355 (51%), Gaps = 29/355 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
++L D LVT++V GTI+ + LDH++ ++K ++ + +LR+ Y+I L
Sbjct: 35 ENLSAADAGLVTELVYGTIQRKMTLDHVLSHFVGNKK----VQTWVRNLLRLSLYQIHFL 90
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
D +P A V + V +AK G ++VNG+LR N L P + +RAL
Sbjct: 91 DRIPERAAVHQAVEIAKKRGHQGIASMVNGVLR--------NVLRQPDVWERQPKGSRAL 142
Query: 224 --ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
A YSHP W+VR+W G+E I + NN P ++R N+ K T+ ++ +L
Sbjct: 143 QIAVAYSHPEWLVRQWLNVYGEETTIAICEANNRTPHSAIRVNAWK-TTKDQVLDKLAEE 201
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
+ + S I ++ G +V + L KEG +QDES+ LV + QPG ++D C
Sbjct: 202 GLEGQASSVSPHAILMEGG--HVAGSRLFKEGYFTIQDESSMLVAPALAAQPGMRVLDAC 259
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401
AAPGGKT ++A + +G + A D++ + ++ AK + ++I+ I +D + +
Sbjct: 260 AAPGGKTTHIAEMMENRGEIIASDVHPHKRDLIANAAKRLGI-TIIQPIVSDALDLPEKA 318
Query: 402 TVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
D++LLDAPC+G GV+ + L++ KT ++ + + +Y LL
Sbjct: 319 LGTFDRILLDAPCTGFGVIRRK----------PDLKWNKTPEDVRAIAQLQYELL 363
>gi|150390542|ref|YP_001320591.1| sun protein [Alkaliphilus metalliredigens QYMF]
gi|149950404|gb|ABR48932.1| sun protein [Alkaliphilus metalliredigens QYMF]
Length = 444
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 101/322 (31%), Positives = 169/322 (52%), Gaps = 12/322 (3%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
FR + D VT++V G + ++D++I KT M P L +LR+ Y+I
Sbjct: 29 FRAETHTPVDKAFVTELVYGVVENLIWIDYVIDQFS-TTKTIK-MNPWTLSLLRLAIYQI 86
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
LD +P +A V+E+V L+K + +NG+LR ++ K+ LP R
Sbjct: 87 FFLDRVPVFAAVNESVDLSKKYCKHTTA-FINGVLRNILRKKEIIRLP-----DKSRDLL 140
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
+ L+ YSHP W+V+++ E L+ NN P +R N+ K ++ D + L
Sbjct: 141 QYLSVKYSHPKWLVQQFMAQFDDEFTESLLKANNERPDLYVRVNTLK-ISIEDCITALRE 199
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ E S +++E ++VK G+ + + L +G +QD S+ LV ++DP PG I+D
Sbjct: 200 KGITVEQSPYIEEALKVK-GIHTIEKLDLYLKGQIYIQDFSSMLVARIMDPHPGALIMDV 258
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
C+APGGK ++A + QG V A D+++ +L+++ E K V +I+T D +
Sbjct: 259 CSAPGGKATHLAQLMGNQGEVVARDVHEHKLKLIKENVKRLGV-KIIKTEVFDAKELDPT 317
Query: 401 STVKCDKVLLDAPCSGLGVLSK 422
+ D VL+DAPCSGLG++ +
Sbjct: 318 MLQRADGVLIDAPCSGLGIIRR 339
>gi|443632757|ref|ZP_21116936.1| RNA-binding Sun protein [Bacillus subtilis subsp. inaquosorum KCTC
13429]
gi|443347580|gb|ELS61638.1| RNA-binding Sun protein [Bacillus subtilis subsp. inaquosorum KCTC
13429]
Length = 447
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 177/323 (54%), Gaps = 16/323 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
++ +L D+D L+T++V GT++ + LD+++ + + ++P ++Q+LR+ Y++
Sbjct: 32 IKSNELSDQDRGLLTELVYGTLQNKIALDYMLKPFINKPQ---KVKPWVIQLLRLSLYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK+ G + VNG+LR + +P + +
Sbjct: 89 EYLEKIPERAAIHEAVEIAKIRGHKGIASFVNGVLRSI------QREGVPSFDAIEDP-V 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R LAT SHP W+V+ W G + A K+ + P +LR N K + RADL+ Q+
Sbjct: 142 RRLATETSHPEWLVKEWADAYGFDAAEKICRIHLIPPKQTLRVNQMK-IDRADLLNQMAA 200
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ E ++ +++ G ++ + G ++QDES+ LV +DP+PG++++D
Sbjct: 201 EGIEVEKGDLAEDAVKLLKG--SIAGTHFFQNGEVSIQDESSMLVARALDPKPGETVLDA 258
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
CAAPGGK+ ++ + +G V ++D++K +++++ E A + ++I D R +
Sbjct: 259 CAAPGGKSAHIGELMENKGSVTSLDLHKHKVKLIKEAADRLGL-TIIEAKTMDARKAGET 317
Query: 401 -STVKCDKVLLDAPCSGLGVLSK 422
+ D++L+DAPCSG GV+ +
Sbjct: 318 FENGQFDRILVDAPCSGFGVIRR 340
>gi|284928897|ref|YP_003421419.1| ribosomal RNA small subunit methyltransferase RsmB [cyanobacterium
UCYN-A]
gi|284809356|gb|ADB95061.1| ribosomal RNA small subunit methyltransferase RsmB [cyanobacterium
UCYN-A]
Length = 453
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 107/324 (33%), Positives = 169/324 (52%), Gaps = 10/324 (3%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYE 160
F+ +L +D L T++V G IR +R LD LI L + K P+L +IL IG Y+
Sbjct: 31 AFKHNELSRQDRGLCTELVYGIIRCQRTLDSLIDQLGN--KKSQKQSPVLRRILHIGLYQ 88
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
++ LD +P A V+ +V LAK +VN ILR+ + +K + L + D
Sbjct: 89 LLYLDHVPLSAAVNTSVDLAKNNNLNVLSKVVNAILREYIRVKKKENCKL--ILSKDFVN 146
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
A+ YS P W+V+ W + G + ++KL W N P+ +R N G T ++ +L
Sbjct: 147 TTAIK--YSFPNWIVKNWYQQWGGDTSVKLCYWFNQSPTIDIRVNVL-GKTTQEIKNELI 203
Query: 280 LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 339
+ V E HL +R+K ++ +G VQD SA LV ++DP+ G++++D
Sbjct: 204 MANVNVEYLPHLPCSLRLKGQTGDIKNLPGFIKGDWTVQDISAQLVSYLLDPKIGETVID 263
Query: 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 399
CAAPGGKT ++A + +GL+ A D RL + + + ++ S I+ + D R
Sbjct: 264 ACAAPGGKTTHIAELMRDKGLILACDRISSRLTKIQQNIERLKLRS-IKLVKGDSRYLQQ 322
Query: 400 NSTVKCDKVLLDAPCSGLGVLSKT 423
+ D+VL+DAPCSGLG L +
Sbjct: 323 FNNF-ADRVLVDAPCSGLGTLHRN 345
>gi|212639615|ref|YP_002316135.1| rRNA cytosine-C5-methylase [Anoxybacillus flavithermus WK1]
gi|212561095|gb|ACJ34150.1| rRNA cytosine-C5-methylase [Anoxybacillus flavithermus WK1]
Length = 446
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/324 (31%), Positives = 171/324 (52%), Gaps = 20/324 (6%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
T +L +D+ L+T++V GTI+ R LD+ + ++EP + +LR+ Y++
Sbjct: 30 IETNELSAQDVALLTELVYGTIQRRDTLDYYLQPFIK-----GNIEPWVRLLLRMSLYQM 84
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD +P AV+ E V +AK G +LVNGILR V + SL K D ++
Sbjct: 85 IYLDRIPDRAVLFEAVEIAKRRGHRGIASLVNGILRS-VQRQGLRSLDDIK----DESER 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA--DLVMQL 278
A+AT SHP+W+VRRW + G +E ++ NN P + R N + D + +
Sbjct: 140 LAIAT--SHPLWLVRRWIEQFGFDETKRMCEVNNFPPEQTARVNVMRATVEEVIDRLKEE 197
Query: 279 NLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 338
+ +P + I K N + + +EGL +QDES+ LV + P ++
Sbjct: 198 GIEAIPSSVVP-----IGTKITKGNAAKTSVFREGLITIQDESSMLVAYALSPNETDVVL 252
Query: 339 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398
DCCAAPGGKT ++A ++ +G V A+DI+ +++++ + AK ++++ +
Sbjct: 253 DCCAAPGGKTTHIAERMNNRGRVVALDIHDHKVKLIEQQAKRLGLSNIEAKQLDSRQAHT 312
Query: 399 DNSTVKCDKVLLDAPCSGLGVLSK 422
+ D++L+DAPCSGLGV+ +
Sbjct: 313 QFAAETFDRILVDAPCSGLGVIRR 336
>gi|255525650|ref|ZP_05392583.1| sun protein [Clostridium carboxidivorans P7]
gi|296185410|ref|ZP_06853820.1| ribosomal RNA small subunit methyltransferase B [Clostridium
carboxidivorans P7]
gi|255510636|gb|EET86943.1| sun protein [Clostridium carboxidivorans P7]
gi|296050244|gb|EFG89668.1| ribosomal RNA small subunit methyltransferase B [Clostridium
carboxidivorans P7]
Length = 442
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 106/318 (33%), Positives = 169/318 (53%), Gaps = 14/318 (4%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
D++D+D LVT+IV GT++++ +D + L + + ++ +L ILRI Y+I LD
Sbjct: 34 DMNDKDKALVTEIVYGTLKYKYTIDTI--LNYYIKSGLKKLDVDILNILRISIYQIRYLD 91
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +AVV+E V LAK A LVNG+LR L+ NN N + +
Sbjct: 92 KIPEFAVVNEAVELAKRKAVKTA-RLVNGVLRSY--LRSNNIDYY-----NKNSDIEKMC 143
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
YS P WMV ++ G+EE K++ N P+ ++R N+ K + +L
Sbjct: 144 FDYSFPKWMVSLFSNQYGKEETKKILQGLNEVPAITVRVNNLK-TNYEEAWEELKKNGYD 202
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
E E I + G +N+ L K GL VQDESA +V ++ + +++D C+AP
Sbjct: 203 IEEGKVCPEAIIINRG-RNIENNPLFKNGLITVQDESAMMVAPSMELKENMTVLDLCSAP 261
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404
GGKT ++A + QG ++A DI++ +L ++ E AK + +V + D + D K
Sbjct: 262 GGKTCHIAELTNNQGKIFAFDIHENKLPLIKENAKRLGITNV-KCGTLDASKYMDIYEEK 320
Query: 405 CDKVLLDAPCSGLGVLSK 422
D+VL+D PCSGLG++ K
Sbjct: 321 GDRVLIDVPCSGLGIIRK 338
>gi|379726842|ref|YP_005319027.1| ribosomal RNA small subunit methyltransferase B [Melissococcus
plutonius DAT561]
gi|376317745|dbj|BAL61532.1| ribosomal RNA small subunit methyltransferase B [Melissococcus
plutonius DAT561]
Length = 453
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 114/357 (31%), Positives = 185/357 (51%), Gaps = 33/357 (9%)
Query: 70 RIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYL 129
RI GGA+++LL NEM ++ L ++D RL T+IV GTI + L
Sbjct: 22 RIDKGGAYSNLLL--------NEM--------IQSSQLGEKDSRLFTEIVYGTISRKLLL 65
Query: 130 DHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAG 188
++ + H K +E + +L + FY+++ LD +P +AV++E V +AK G G
Sbjct: 66 EYYLDTFIHKRK---KVEHWVRMLLILSFYQLLYLDKVPDHAVINEAVEIAKRRGNLGTG 122
Query: 189 NLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIK 248
VNGILR L LP L+ R L+ S P+W+V++ + LG+ E K
Sbjct: 123 KFVNGILRSL------QRRGLPSLDEISDPIER-LSIEISMPLWLVKKLIQQLGETETKK 175
Query: 249 LMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAG 308
L + S R +SRK ++R D ++QL + S I + G + +
Sbjct: 176 LGLSLFEKSHVSGRIDSRK-ISRFDAIIQLQKEGIEASESPISPYGIIAEKG--RLATSS 232
Query: 309 LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS--GQGLVYAIDI 366
L +EG +QDES+ L + ++D CAAPGGKT ++A+ L+ QG + A+DI
Sbjct: 233 LFREGKLTIQDESSMLAAPTLQIDESNQVLDACAAPGGKTTHIATFLNQQKQGKIIALDI 292
Query: 367 NKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCDKVLLDAPCSGLGVLSK 422
+ +L+++ E A+ QV+S+I+ D R + + D++L+DAPCSGLG++ +
Sbjct: 293 HDHKLKLIKENAERMQVSSIIKLEKLDARKVKEVYPSEYFDRILVDAPCSGLGLMRR 349
>gi|398818322|ref|ZP_10576914.1| ribosomal RNA small subunit methyltransferase RsmB [Brevibacillus
sp. BC25]
gi|398028090|gb|EJL21614.1| ribosomal RNA small subunit methyltransferase RsmB [Brevibacillus
sp. BC25]
Length = 448
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 108/355 (30%), Positives = 180/355 (50%), Gaps = 29/355 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
++L D LVT++V GTI+ + LDH++ ++K ++ + +LR+ Y+I L
Sbjct: 35 ENLSAVDAGLVTELVYGTIQRKLTLDHVLSHFVGNKK----VQTWVRNLLRLSLYQIHFL 90
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
D +P A V + V +AK G ++VNG+LR N L P + RAL
Sbjct: 91 DRIPERAAVHQAVEIAKKRGHQGIASMVNGVLR--------NVLRQPDVWERQPKGGRAL 142
Query: 224 --ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
A YSHP W+VR+W G+E I + NN P S+R N+ K T+ L+ +L
Sbjct: 143 QIAVAYSHPEWLVRQWLAVYGEETTIAICEANNRTPHSSVRVNASK-TTKDQLLDKLAEE 201
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
+ + S I ++ G + + L KEG +QDES+ LV + +PG ++D C
Sbjct: 202 GLEGQASTVSPHAILMEGG--HAAGSRLFKEGYFTIQDESSMLVAPALAAEPGMRVLDAC 259
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401
AAPGGKT ++A + +G + A D++ + ++ AK + ++I I +D + +
Sbjct: 260 AAPGGKTTHIAEMMGNRGQIIASDVHAHKRDLIASAAKRLGI-TIIEPIVSDALDLPEQA 318
Query: 402 TVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
D++LLDAPC+G GV+ + L++ KT ++ + + +Y LL
Sbjct: 319 LGTFDRILLDAPCTGFGVIRRK----------PDLKWNKTPEDVRAIAQLQYELL 363
>gi|335996801|ref|ZP_08562718.1| 16S rRNA m(5)C methyltransferase [Lactobacillus ruminis SPM0211]
gi|335351871|gb|EGM53362.1| 16S rRNA m(5)C methyltransferase [Lactobacillus ruminis SPM0211]
Length = 447
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 120/367 (32%), Positives = 188/367 (51%), Gaps = 45/367 (12%)
Query: 65 AVRLM-RIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGT 122
AV+L+ RI+ G++++L LN+ K S LD+RD+ L+T+IV G
Sbjct: 12 AVKLLERIEKNGSYSNLALNQTIKKS-----------------QLDERDVSLLTNIVYGV 54
Query: 123 IRWR----RYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVR 177
I+ + YLD I K +EP + ++L+ Y+ + LD +P AV +E +
Sbjct: 55 IQRKLTLEFYLDGFI-------KNRRKVEPWVYELLKTALYQQLYLDKIPKRAVFNETIE 107
Query: 178 LAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRW 237
+AKV G V GIL ++ + LP P GN + A ++ S P W+V +
Sbjct: 108 IAKVNGHEGIRRFVTGILHEI----ERKGLPDP---GNVKDSAEKISIESSTPKWLVEKL 160
Query: 238 TKYLGQEEAIKLMVWNNSDPSFSLRAN-SRKGVTRADLVMQLNLLKVPHELSLHLDEFIR 296
T+ LG E+ I L+ N P+ S+R N ++ V +A ++ KV L L +R
Sbjct: 161 TEELGFEKTISLLKSINEPPAQSIRVNLAKNTVHQAVSALEKEGFKVSKSLVSPLG--LR 218
Query: 297 VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS 356
V G + + K GL VQDESA L V +D + ++D CAAPGGKT+ +A+ L
Sbjct: 219 VSGGF--IPHSDAYKRGLVTVQDESAMLAVDSMDVKSTDVVLDGCAAPGGKTMQIAAVLD 276
Query: 357 GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAPCS 415
G VYA+DI+ ++ ++ + A+L V + D R + + DKVL+DAPCS
Sbjct: 277 S-GRVYALDIHAHKVGLIEKNAELCGVTKYVTAKKTDARKAKEEFDEESFDKVLIDAPCS 335
Query: 416 GLGVLSK 422
GLG++ +
Sbjct: 336 GLGLMRR 342
>gi|296331149|ref|ZP_06873623.1| RNA-binding Sun protein [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305674305|ref|YP_003865977.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus subtilis
subsp. spizizenii str. W23]
gi|296151793|gb|EFG92668.1| RNA-binding Sun protein [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305412549|gb|ADM37668.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus subtilis
subsp. spizizenii str. W23]
Length = 447
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/323 (28%), Positives = 177/323 (54%), Gaps = 16/323 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
++ +L D+D L+T++V GT++ + LD+++ + + ++P ++Q+LR+ Y++
Sbjct: 32 IKSNELSDQDRALLTELVYGTLQNKIALDYMLKPFINKPQ---KVKPWVIQLLRLSLYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK+ G + VNG+LR + +P + +
Sbjct: 89 EYLEKIPDRAAIHEAVEIAKIRGHKGIASFVNGVLRSI------QREGVPSFDAIEDP-V 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R LAT SHP W+V+ WT G + A K+ + P +LR N K RADL+ Q+
Sbjct: 142 RRLATETSHPEWLVKEWTDAYGFDAAEKICRIHLIPPRQTLRVNQMKA-DRADLLDQMAA 200
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ E ++ +++ G ++ + G ++QDES+ LV +DP+PG++++D
Sbjct: 201 EGIEVENGDLAEDAVKLLKG--SIAGTHFFQNGEVSIQDESSMLVARALDPKPGETVLDA 258
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
CAAPGGK+ ++ + +G V ++D++K +++++ E A + ++I D R +
Sbjct: 259 CAAPGGKSAHIGELMENKGSVTSLDLHKHKVKLIKEAADRLGL-TIIDAKTMDARKAGET 317
Query: 401 -STVKCDKVLLDAPCSGLGVLSK 422
+ D++L+DAPCSG GV+ +
Sbjct: 318 FENGQFDRILVDAPCSGFGVIRR 340
>gi|424834133|ref|ZP_18258849.1| 16S rRNA methyltransferase B [Clostridium sporogenes PA 3679]
gi|365978908|gb|EHN14974.1| 16S rRNA methyltransferase B [Clostridium sporogenes PA 3679]
Length = 442
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 109/364 (29%), Positives = 182/364 (50%), Gaps = 31/364 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIV 119
R V+ L + + GA++++ LNKK S +L D D L+T+IV
Sbjct: 5 REVALDVLKAVLYEGAYSNIVLNKKLNKS-----------------NLKDNDKALITEIV 47
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRL 178
GT++++ LD I + + +M+ + ILRI Y+I LD +P +A V+E V +
Sbjct: 48 YGTLKYKETLD--IIIQSYLRNPIKTMDKNIANILRITIYQIRYLDKIPSFAAVNEAVEM 105
Query: 179 AKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWT 238
+K + LVNG+LR + N NDR + IYS+P W+++ +
Sbjct: 106 SK-KISIKYSKLVNGVLRNYIRTYKNKKFY------NDRNNLEKFSFIYSYPKWLIKIFI 158
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVK 298
G E A K++ N P+ ++R N+ K + + +L E E I++
Sbjct: 159 SQYGIEIAEKILKGLNERPNITVRVNNLK-IDYDEAFEKLGEYGYNIEEGYICPEAIQII 217
Query: 299 TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 358
G +N+ + L EG VQDESA LV ++ ++D C+APGGKT +++ ++ +
Sbjct: 218 KG-KNIEKNPLFIEGDITVQDESAMLVAPSMELTEESIVLDLCSAPGGKTTHISEIINNK 276
Query: 359 GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLG 418
+YA D+++ +L ++ + AK N+ I T +D F K D+VL+D PCSGLG
Sbjct: 277 SKIYAYDVHENKLSLIEDNAKRLGANN-IETNVSDASIFNKKLKEKADRVLIDVPCSGLG 335
Query: 419 VLSK 422
++ K
Sbjct: 336 IIRK 339
>gi|317121758|ref|YP_004101761.1| sun protein [Thermaerobacter marianensis DSM 12885]
gi|315591738|gb|ADU51034.1| sun protein [Thermaerobacter marianensis DSM 12885]
Length = 511
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 116/354 (32%), Positives = 170/354 (48%), Gaps = 26/354 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L R+ L T++ G R + LD + K + ++P + LR+G Y++ LD
Sbjct: 95 LPARERALATELAYGVARRQGTLDWALSRFS--RKPPARLDPPVRAALRLGAYQLWYLDR 152
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A VDE+V L + A VN +LR + P ++ +R A LA
Sbjct: 153 IPAHAAVDESVNLVRRHGPAYAAGFVNAVLRAAA----RHGFPQGEVPPRERDLAGHLAL 208
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD---LVMQLNLLK 282
+++HP W+V RW LG EEA +L+ NN P S R N RAD L L
Sbjct: 209 VHAHPRWLVERWLGRLGPEEAERLLEANNRVPPLSARVNR----LRADPRALAAALAARG 264
Query: 283 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
V E L E +R+ G+ + +EG QDES+ L V V+DP+PG +VD A
Sbjct: 265 VAVEAGRFLPEALRLGHGVHPA-ELDAFQEGALTWQDESSMLAVHVLDPRPGDLVVDVAA 323
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402
APGGK+ ++A + +G V A D + GRL + E A+ + I + D R +
Sbjct: 324 APGGKSTHIAERMGDRGRVVACDADPGRLEKVGEAARRLGLG-CIEPLALDGRKLPERLA 382
Query: 403 VKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
+ D+VL D PCSGLGVL++ LR+ KT + L E + LL
Sbjct: 383 GQADRVLADVPCSGLGVLARR----------PDLRWRKTPDDLAALAELQGELL 426
>gi|255656560|ref|ZP_05401969.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile QCD-23m63]
gi|296449988|ref|ZP_06891752.1| ribosomal RNA small subunit methyltransferase B [Clostridium
difficile NAP08]
gi|296878369|ref|ZP_06902377.1| ribosomal RNA small subunit methyltransferase B [Clostridium
difficile NAP07]
gi|296261258|gb|EFH08089.1| ribosomal RNA small subunit methyltransferase B [Clostridium
difficile NAP08]
gi|296430667|gb|EFH16506.1| ribosomal RNA small subunit methyltransferase B [Clostridium
difficile NAP07]
Length = 441
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 101/326 (30%), Positives = 175/326 (53%), Gaps = 25/326 (7%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F+ ++ D D L T+++ G I + YLD++I L + M + LR+G Y+I
Sbjct: 29 FKNLEISDIDRGLATELIYGVIENKYYLDYIINKLS--KIKVKKMSTYVKIFLRMGTYQI 86
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD + YA V+E V+L+K + +G +N ILR + K+ ++ +
Sbjct: 87 LFLDSISDYAAVNETVKLSKKYDKKSSG-FINAILRNEIRAKE------TIMDITEEDSV 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN- 279
+ L+ YS+ W+++ W GQE A L+ N+ PS +R N K ++R +L+ +L+
Sbjct: 140 KYLSIKYSYNSWIIKNWIDKFGQEFAEDLLEANSEKPSIYIRTNMLK-ISREELIEKLSE 198
Query: 280 ----LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
LKVP ++E I+V+ ++N+ + L K GL +QD S+ +V V++P+
Sbjct: 199 MGIVCLKVPM-----VEEAIKVEK-MKNIEKNELFKAGLFTIQDISSMIVGKVINPKEDS 252
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHADL 394
++D C+APGGK+ ++A+ ++ G V A DI + +L+++ T +L N + D
Sbjct: 253 FVLDVCSAPGGKSTHLATLMNNTGQVVARDIFEHKLKLIKSTVNRLGLKNVCVERF--DA 310
Query: 395 RTFADNSTVKCDKVLLDAPCSGLGVL 420
+NS K D VL D PCSGLG++
Sbjct: 311 SEIDENSISKFDYVLADVPCSGLGII 336
>gi|56964082|ref|YP_175813.1| RNA-binding protein Sun [Bacillus clausii KSM-K16]
gi|56910325|dbj|BAD64852.1| RNA-binding protein Sun [Bacillus clausii KSM-K16]
Length = 447
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 113/352 (32%), Positives = 177/352 (50%), Gaps = 28/352 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD RD L+T++V GTI +R LD+ + K + +LL R+ Y++V LD
Sbjct: 37 LDKRDSGLLTELVYGTIARKRTLDYYLAPFLKSGKKRALWVDVLL---RLSVYQMVFLDR 93
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P AVV E V +A G LVNG+LR + LP ++ RA A
Sbjct: 94 IPDRAVVHEAVTIANKRGHKGISGLVNGVLRSI------QRQGLPNVDAIADPIERA-AV 146
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHP W++ RW G+++AI + NN P LR N R T A+LV L V
Sbjct: 147 QTSHPQWLMARWMNQYGEDDAIAMANANNIPPEVCLRVN-RMKTTAAELVAHLGNEGVEA 205
Query: 286 ELSLHLDEF-IRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
E S L + + +K G N K+GL QDE++ LV ++ P+ G ++D CAAP
Sbjct: 206 ERSKLLPDLAVIIKKG--NPFGGEAYKKGLFTAQDEASMLVAKLLGPEEGMDVLDACAAP 263
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404
GGKT ++A ++G G + A+D++ +++++ E A + + I T D RT +
Sbjct: 264 GGKTTHIAEQMNGTGHILALDLHPHKVKLIAEQAARLGLEN-IETRAEDARTL--QTKKH 320
Query: 405 CDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
++VL+DAPC+G GV+ + +R+ KT ++H+ + +L
Sbjct: 321 YNRVLVDAPCTGFGVIRRK----------PDIRWSKTEKDVKHIANVQAAIL 362
>gi|325290449|ref|YP_004266630.1| sun protein [Syntrophobotulus glycolicus DSM 8271]
gi|324965850|gb|ADY56629.1| sun protein [Syntrophobotulus glycolicus DSM 8271]
Length = 461
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 112/352 (31%), Positives = 178/352 (50%), Gaps = 27/352 (7%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-M 166
D RD +L +V GT++ R LD+ I H + S++ ++ ILR G ++++ +D +
Sbjct: 47 DSRDRQLAAALVNGTLKNRLTLDYAIRR--HLKTPMSALPHMVRAILRTGAFQLLYMDRI 104
Query: 167 PPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI 226
P A V+E V+ K A P LVN +L ++ + P P + AR LA
Sbjct: 105 PAAAAVNEAVKSVK-AEEPKFAGLVNSVLHRVAEV--GWEFPWPD---QKKEPARYLAVK 158
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHE 286
YSHP W+ RW G EE KL + NN +R N+ K ++R +LV +L +
Sbjct: 159 YSHPQWLAARWLARWGLEETEKLCISNNLPAPTCIRTNTLK-ISRENLVSRLENEGIQVT 217
Query: 287 LSLHLDE--FIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
LS E FI L ++ +EGL VQDES+ LV ++ +PG+ ++D C AP
Sbjct: 218 LSAKTPEGLFIEDFGALDELLS---YQEGLFTVQDESSQLVAHILGVKPGERVLDVCCAP 274
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404
GGKT ++A ++ QG + D+ +L ++NE + + +I+T D + +
Sbjct: 275 GGKTTHLAQLMNNQGTIIGNDLYPAKLSLVNELVERLGI-GIIQTQAGDAGIL-EGIEGR 332
Query: 405 CDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
DKVL+DAPCSGLGV+ + LR+ K+ ++ L E + +L
Sbjct: 333 FDKVLVDAPCSGLGVIRRRA----------DLRWQKSEQEIKELSEIQKKIL 374
>gi|15895002|ref|NP_348351.1| rRNA methylase [Clostridium acetobutylicum ATCC 824]
gi|337736943|ref|YP_004636390.1| rRNA methylase [Clostridium acetobutylicum DSM 1731]
gi|384458450|ref|YP_005670870.1| rRNA methylase, SUN family [Clostridium acetobutylicum EA 2018]
gi|15024692|gb|AAK79691.1|AE007682_1 Predicted rRNA methylase, SUN family [Clostridium acetobutylicum
ATCC 824]
gi|325509139|gb|ADZ20775.1| rRNA methylase, SUN family [Clostridium acetobutylicum EA 2018]
gi|336293086|gb|AEI34220.1| rRNA methylase [Clostridium acetobutylicum DSM 1731]
Length = 441
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 102/326 (31%), Positives = 168/326 (51%), Gaps = 20/326 (6%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYE 160
+ +++ +D LVT+IV GTI+++ +D +I + + ++ +L +LR+ Y+
Sbjct: 29 ALKGEEISSKDKGLVTEIVYGTIKYKYSIDIIISKFV--KTKINKIDKRVLNVLRMSIYQ 86
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG-NDRA 218
I LD +P +A V+E V + K + + VN +LR N L P + N
Sbjct: 87 IRYLDKIPDFAAVNEAVNITKKYISLKSSKFVNAVLR--------NYLRNPNIAFYNKDN 138
Query: 219 QARALATIYSHPVWMVRRWTKYLGQ--EEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM 276
L YS WMV+ + K EE +K + N +PS ++R N R + +L
Sbjct: 139 SVEKLCFNYSFEPWMVKFFLKQYKNKAEEILKGL---NENPSITIRVN-RLKTSHKELWN 194
Query: 277 QLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 336
+L L E L + IR+K G ++ L G VQDESA LV +D +
Sbjct: 195 ELEKLDYNIEEGYILKDAIRIKKG-HSIENNPLFVRGEFTVQDESAMLVSECMDIKENLV 253
Query: 337 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396
I D C+APGGKT +M L G +YA D+++ +++++NE AK V ++ ++ D +
Sbjct: 254 IFDMCSAPGGKTTHMGELLKNTGTIYAFDLHESKIKLINENAKRLGVENINASV-LDASS 312
Query: 397 FADNSTVKCDKVLLDAPCSGLGVLSK 422
+ D+ K D++L+DAPCSGLG++ K
Sbjct: 313 YHDDFVNKADRILVDAPCSGLGIIRK 338
>gi|228909690|ref|ZP_04073513.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis IBL 200]
gi|228849979|gb|EEM94810.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis IBL 200]
Length = 429
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 104/318 (32%), Positives = 170/318 (53%), Gaps = 18/318 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 21 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 75
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+AT
Sbjct: 76 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT 130
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHPVW+V+ WT G E A K+ N P + R N K VT + + L +
Sbjct: 131 --SHPVWLVQEWTSAYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAIELLASEGIEA 187
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ D+ I+++ G NV K+G ++QDES+ LV ++P G++++D CAAPG
Sbjct: 188 KRGDLSDDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNEGEAVLDSCAAPG 245
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404
GKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ S
Sbjct: 246 GKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFSNET 304
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 305 FDKILVDAPCSGFGVIRR 322
>gi|39998462|ref|NP_954413.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter
sulfurreducens PCA]
gi|409913814|ref|YP_006892279.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter
sulfurreducens KN400]
gi|39985409|gb|AAR36763.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter
sulfurreducens PCA]
gi|298507406|gb|ADI86129.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter
sulfurreducens KN400]
Length = 448
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 112/328 (34%), Positives = 174/328 (53%), Gaps = 21/328 (6%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L+T++V G +R LD+L+ L C + +E +L +LR+G Y+I LD +P
Sbjct: 43 DRGLLTELVYGVLRRTATLDYLVDLFCATRA--AKLERSVLILLRLGLYQIFFLDRIPVS 100
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A V+E V LA+ P A LVN +LR+ ++ +S+ P R A LA +SH
Sbjct: 101 AAVNETVTLAREK-SPRASGLVNAVLRRSD--RERSSIAWPD---RVRDPAGYLALRHSH 154
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSL 289
P W+V W LG EEA L + P +LR N+ + +R + L E +
Sbjct: 155 PRWIVEGWIAQLGFEEAEALAEVMAAPPPLTLRVNTLR-TSREAYLELLREAGTEAEPTR 213
Query: 290 HLDEFIRV--KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 347
H IR+ +T + + G EGL VQDES+ L +++P+ G+ ++D CA+PGGK
Sbjct: 214 HSPHGIRILSRTAVPALPGFG---EGLVIVQDESSQLASLLLEPRSGERVLDACASPGGK 270
Query: 348 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 407
++A ++ +G V A D+++ +L + E A+ + +IR AD R N+ D+
Sbjct: 271 ATHLAQIMADKGEVIAWDVSEKKLSPIAENARRLGIG-IIRPAMADARNPEQNA-APFDR 328
Query: 408 VLLDAPCSGLGVLSKTCVGIGDWRIWKS 435
+L+DAPCS LGVL +T G W WK+
Sbjct: 329 ILVDAPCSALGVLRRTPE--GKW--WKT 352
>gi|350265887|ref|YP_004877194.1| ribosomal RNA small subunit methyltransferase B [Bacillus subtilis
subsp. spizizenii TU-B-10]
gi|349598774|gb|AEP86562.1| ribosomal RNA small subunit methyltransferase B [Bacillus subtilis
subsp. spizizenii TU-B-10]
Length = 447
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 93/323 (28%), Positives = 177/323 (54%), Gaps = 16/323 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
++ +L D+D L+T++V GT++ + LD+++ + + ++P ++Q+LR+ Y++
Sbjct: 32 IKSNELSDQDRGLLTELVYGTLQNKIALDYMLKPFINKPQ---KVKPWVIQLLRLSLYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK+ G + VNG+LR + +P + +
Sbjct: 89 EYLEKIPDRAAIHEAVEIAKIRGHKGIASFVNGVLRSI------QREGVPTFDAIEDP-V 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R LAT SHP W+V+ WT G + A K+ + P +LR N K RADL+ Q+
Sbjct: 142 RRLATETSHPEWLVKEWTDAYGFDAAEKICRIHLIPPRQTLRVNQMKA-DRADLLDQMAA 200
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ E ++ +++ G ++ + G ++QDES+ LV +DP+PG++++D
Sbjct: 201 EGIEVENGDLAEDAVKLLKG--SIAGTHFFQTGEVSIQDESSMLVARALDPKPGETVLDA 258
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
CAAPGGK+ ++ + +G V ++D++K +++++ E A + ++I D R +
Sbjct: 259 CAAPGGKSAHIGELMENKGSVTSLDLHKHKVKLIKEAADRLGL-TIIDAKTMDARKAGET 317
Query: 401 -STVKCDKVLLDAPCSGLGVLSK 422
+ D++L+DAPCSG GV+ +
Sbjct: 318 FENGQFDRILVDAPCSGFGVIRR 340
>gi|352516237|ref|YP_004885554.1| putative rRNA methyltransferase [Tetragenococcus halophilus NBRC
12172]
gi|348600344|dbj|BAK93390.1| putative rRNA methyltransferase [Tetragenococcus halophilus NBRC
12172]
Length = 452
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 119/378 (31%), Positives = 189/378 (50%), Gaps = 49/378 (12%)
Query: 60 HRAVSAVR------LMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLR 113
H A VR L RIQ GGA+++LL + G L +D R
Sbjct: 3 HDAKKTVRFAALQALERIQKGGAYSNLLLNEEIKKGQ----------------LSAKDSR 46
Query: 114 LVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVV 172
L+T++V GT+ + L+ + + K + LLL++ Y++ LD +P +A++
Sbjct: 47 LLTELVYGTVSRQLLLEFYLKPFIANAKKIDAWVKLLLEL---SIYQLYFLDRIPDHAIL 103
Query: 173 DENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQARALATIYSHP 230
+E V +AKV G G VNG+LR + L D ++ P + LAT S P
Sbjct: 104 NEAVDIAKVRGNVGIGKFVNGVLRNIKRQGLPDTATIDDP---------VKRLATQISMP 154
Query: 231 VWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLH 290
W+ +R + +G E+ +L + S SLR ++RK +TR + L + S
Sbjct: 155 QWLTKRLVEEIGMEQTKQLGISLFSPSQVSLRVDTRK-ITRKQAIESLAQEGIEAIESTI 213
Query: 291 LDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLY 350
+ I K G V ++ L +GL +QDES+ LV + + ++D CAAPGGKT +
Sbjct: 214 SEYGIIAKKGF--VAKSQLFHDGLLTIQDESSMLVAPALQIENKHQVLDACAAPGGKTTH 271
Query: 351 MASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR----TFADNSTVK 404
+AS L+ + G V A+DI+K ++R++ E A V V++ D R TFA +S
Sbjct: 272 IASFLAAKENGRVTALDIHKQKVRLIEENAIRMHVEDVVKAKELDARKVNNTFAQSS--- 328
Query: 405 CDKVLLDAPCSGLGVLSK 422
D++L+DAPCSGLG++ +
Sbjct: 329 FDRILVDAPCSGLGLMRR 346
>gi|435853625|ref|YP_007314944.1| ribosomal RNA small subunit methyltransferase RsmB/transcription
antitermination factor NusB [Halobacteroides halobius
DSM 5150]
gi|433670036|gb|AGB40851.1| ribosomal RNA small subunit methyltransferase RsmB/transcription
antitermination factor NusB [Halobacteroides halobius
DSM 5150]
Length = 445
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 101/327 (30%), Positives = 164/327 (50%), Gaps = 23/327 (7%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ +LD RD L T ++ G RWR LD +I + + M P + LR+G Y+I
Sbjct: 30 LQESNLDKRDRSLATQLIYGVTRWRNSLDWVINQFAN--RKVKKMTPWVRNALRLGVYQI 87
Query: 162 VKLDMPPYAVV-DENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
LD P V +E V +AK GA +NGILR ++ ++ + P LE +
Sbjct: 88 NYLDRIPNPVACNETVEVAKAHCNRGAIKFINGILRNII--RNLAEITYPSLEEDP---V 142
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
+ + YS P W+V+RW KY G E+ IK+ N P +R N+ K + L+ +L
Sbjct: 143 QYIRYKYSQPQWLVQRWRKYFGTEKTIKICQTLNQIPPMIIRTNTLK-LDSEQLISKL-- 199
Query: 281 LKVPHELSLHLDEFIRVKTGLQ-----NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
E + E +VK + + + G VQ S+ LV ++ PQ
Sbjct: 200 ----EEEGISAKEVSQVKEAVNLLDYPAIASIDSFQAGNFIVQGLSSMLVAHLLKPQEDD 255
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
+VD C+APGGKT ++A + +G + A++++K ++ ++ E + +N+V D R
Sbjct: 256 LVVDLCSAPGGKTTHLAQVMENRGQINAVELHKAKVNLIKENCQRLGINNV-EFYCDDGR 314
Query: 396 TFADNSTVKCDKVLLDAPCSGLGVLSK 422
+ T + DK+L+DAPCSGLG+++K
Sbjct: 315 EIS--FTQQADKILVDAPCSGLGIMAK 339
>gi|428298107|ref|YP_007136413.1| sun protein [Calothrix sp. PCC 6303]
gi|428234651|gb|AFZ00441.1| sun protein [Calothrix sp. PCC 6303]
Length = 448
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 114/321 (35%), Positives = 166/321 (51%), Gaps = 17/321 (5%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQ-ILRIGFYEI-VK 163
+L + D RLVT++V G++R +R LD +I + K S +P L+ IL +G Y++ +
Sbjct: 33 NLANLDRRLVTELVYGSVRRQRTLDAIIDKIA---KKKSQQQPKDLRTILHLGLYQLRYQ 89
Query: 164 LDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
+P A V+ V LAK PG L+NGILR+ + L D + +R L
Sbjct: 90 ERIPDSAAVNTTVDLAKEHGFPGLTGLINGILRQYLRLIDAGDEIITSSNPVER-----L 144
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
+YS P W+++ W + G EE KL W N P+ LR N + T + V
Sbjct: 145 GILYSFPDWIIQVWVEQFGLEETEKLCQWMNQTPTIDLRVNLLR-TTVEKVEAAFTAAGV 203
Query: 284 PHELSLHLDEFIRVKTGLQNVIQ--AGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
++ +L +R+ G IQ G L +G VQD SA LV ++DP+ + I+D C
Sbjct: 204 KYQRLQYLPCGLRL-LGHNGRIQDLPGFL-DGWWTVQDSSAQLVGYLLDPKLNEVIIDTC 261
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401
AAPGGKT ++A + QG ++A D R+ L E + Q+ S IRT D R +
Sbjct: 262 AAPGGKTTHIAELMEDQGTIWACDRTASRMGKLKENIQRLQIQS-IRTCVGDSRDLPQFT 320
Query: 402 TVKCDKVLLDAPCSGLGVLSK 422
+ DKVLLDAPCSGLG L +
Sbjct: 321 GI-ADKVLLDAPCSGLGTLHR 340
>gi|428215873|ref|YP_007089017.1| ribosomal RNA small subunit methyltransferase RsmB [Oscillatoria
acuminata PCC 6304]
gi|428004254|gb|AFY85097.1| ribosomal RNA small subunit methyltransferase RsmB [Oscillatoria
acuminata PCC 6304]
Length = 456
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 118/371 (31%), Positives = 177/371 (47%), Gaps = 35/371 (9%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L + G FAD+ K ++++ L D RL T++V
Sbjct: 5 RQIAFLALRDVHRRGVFADIALDK----------WLQKAKQQEESALIPSDRRLATELVY 54
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQI-LRIGFYEIVKLD-MPPYAVVDENVRL 178
G +R R LD +I L K S+ +P L+I L +G Y++ L +P A V+ V L
Sbjct: 55 GCVRRMRTLDAIIDQLA---KKKSANQPDDLRIILHLGLYQLRYLSTIPASAAVNTTVEL 111
Query: 179 AKVALRPGAGNLVNGILRKLVLL---KDNNSLPLPKLEGNDRAQARALATIYSHPVWMVR 235
K G VNG+LR+ + L ++ + L LP E L ++S P W+V
Sbjct: 112 TKDNKFKGLAGFVNGLLRQYIRLAESENTDPLVLPDDE------ISRLGLLHSFPDWIVA 165
Query: 236 RWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKG----VTRADLVMQLNLLKVPHELSLHL 291
W LG E KL W N P+ LR N K V A + + ++PH L
Sbjct: 166 NWCDRLGVAETEKLCTWFNQSPTLDLRINPLKTTLEEVETAFQSAGVQVARLPH-----L 220
Query: 292 DEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYM 351
+ +R+ +G + + G +QD SA LV ++++ +PGQ +D CAAPGGKT ++
Sbjct: 221 PQALRLCSGAGAIENLPGYQAGWWTIQDSSAQLVGSLLEAKPGQVAIDACAAPGGKTTHL 280
Query: 352 ASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411
A + G ++A D RL+ + E A Q+ S I+T+ D R F D VLLD
Sbjct: 281 AEMMGDTGTIWACDKAPSRLKKVKENADRLQLQS-IQTLSGDSRNFTQFHQT-ADWVLLD 338
Query: 412 APCSGLGVLSK 422
APCSGLG L +
Sbjct: 339 APCSGLGTLHR 349
>gi|428303896|ref|YP_007140721.1| sun protein [Crinalium epipsammum PCC 9333]
gi|428245431|gb|AFZ11211.1| sun protein [Crinalium epipsammum PCC 9333]
Length = 480
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 114/350 (32%), Positives = 167/350 (47%), Gaps = 33/350 (9%)
Query: 96 VERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILR 155
++R L T DR+L VT++V G++R R LD L+ L +K + P L IL
Sbjct: 28 IDRALHKATLSRSDRNL--VTELVYGSVRRLRSLDALLDQL--GKKKANQQNPDLRTILH 83
Query: 156 IGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG 214
+G Y++ LD + V+ V LAK +VNGILR+ + LK+ PL E
Sbjct: 84 LGLYQLRYLDNISAATAVNSTVELAKTNSFSALTGVVNGILRQYIRLKEELGDPLQLPEN 143
Query: 215 NDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANS-RKGVTRAD 273
L YS P W++ W LG E +L N PS LR N R + +
Sbjct: 144 ----PVERLGIFYSFPNWIIEAWLAQLGFAETEQLCAAMNQTPSIDLRVNILRTSIEEVE 199
Query: 274 LVMQ-----LNLLKVPHELSLH----------------LDEFIRVKTGLQNVIQAGLLKE 312
MQ +N + + LS++ + + +R+ + + + E
Sbjct: 200 AEMQSADVTVNRINFKNPLSVNEEGAESEVSNQEDKISVPQALRLSGKIGAIQELPGFTE 259
Query: 313 GLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLR 372
G +QD SA LV ++DPQPG+ ++D CAAPGGKT ++A + G V+ D RL+
Sbjct: 260 GWWTIQDSSAQLVSYLLDPQPGEVVIDACAAPGGKTTHIAELMGDVGKVWGCDRTPSRLK 319
Query: 373 ILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
L E A+ + S I+ D R T KCD+ LLDAPCSGLG L++
Sbjct: 320 KLKENAQRLNLKS-IQICTGDSRDLP-QFTNKCDRALLDAPCSGLGTLNR 367
>gi|20807946|ref|NP_623117.1| tRNA and rRNA cytosine-C5-methylase [Thermoanaerobacter
tengcongensis MB4]
gi|254479565|ref|ZP_05092880.1| ribosomal RNA small subunit methyltransferase B [Carboxydibrachium
pacificum DSM 12653]
gi|20516516|gb|AAM24721.1| tRNA and rRNA cytosine-C5-methylases [Thermoanaerobacter
tengcongensis MB4]
gi|214034503|gb|EEB75262.1| ribosomal RNA small subunit methyltransferase B [Carboxydibrachium
pacificum DSM 12653]
Length = 443
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 167/322 (51%), Gaps = 18/322 (5%)
Query: 103 RTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIV 162
R ++ + D V ++V G I + LD ++ K + + LLL L +G Y+++
Sbjct: 30 RNDEVKEVDAAFVKELVYGVIERKYTLDFILSFFI---KKSADTKALLL--LEMGLYQLL 84
Query: 163 KLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
+D +P YA ++E V +AK L + +N +LR + K+ P + +
Sbjct: 85 YMDKVPDYAAINETVEIAKKFLSKKGASFLNAVLRSYLREKEKVKFP------DKQNFPY 138
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
L YS+P W++ R+ K ++A KL+ N P S R N+ K ++ +L +L
Sbjct: 139 YLKVTYSYPDWIIERFLKNFDADKAEKLLASLNEKPEISYRVNTLK-ISAEELQEKLKRE 197
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
+ ++ +L+E + + L+N + K+GL QDE++ LV ++ PQ G+ I+D C
Sbjct: 198 DISYKKGYYLEEALYI--DLKNPESHPIYKDGLIHPQDEASMLVSRILSPQKGERILDVC 255
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401
AAPGGKT +++ + G V A D++ RL+++ E + V +V + TF + S
Sbjct: 256 AAPGGKTTHISQIMENTGEVVAFDLHPHRLKLIEENCRRLGVTNVKTEVFD--ATFVNES 313
Query: 402 TV-KCDKVLLDAPCSGLGVLSK 422
+ K D+VL D PC+G+G++ K
Sbjct: 314 YLEKADRVLADVPCTGIGIIRK 335
>gi|332685780|ref|YP_004455554.1| ribosomal RNA small subunit methyltransferase B [Melissococcus
plutonius ATCC 35311]
gi|332369789|dbj|BAK20745.1| ribosomal RNA small subunit methyltransferase B [Melissococcus
plutonius ATCC 35311]
Length = 453
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 114/357 (31%), Positives = 184/357 (51%), Gaps = 33/357 (9%)
Query: 70 RIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYL 129
RI GGA+++LL NEM ++ L ++D RL T+IV GTI + L
Sbjct: 22 RIDKGGAYSNLLL--------NEM--------IQSSQLGEKDSRLFTEIVYGTISRKLLL 65
Query: 130 DHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAG 188
++ + H K +E + +L + FY+++ LD +P +AV++E V +AK G G
Sbjct: 66 EYYLDTFIHKRK---KVEHWVRMLLILSFYQLLYLDKVPDHAVINEAVEIAKRRGNLGTG 122
Query: 189 NLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIK 248
VNGILR L LP L+ R L+ S P+W+V++ + LG+ E K
Sbjct: 123 KFVNGILRSL------QRRGLPSLDEISDPIER-LSIEISMPLWLVKKLIQQLGETETKK 175
Query: 249 LMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAG 308
L + S R +SRK ++R D ++QL + S I + G + +
Sbjct: 176 LGLSLFEKSHVSGRIDSRK-ISRFDAIIQLQKEGIEASESPISPYGIIAEKG--RLATSS 232
Query: 309 LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS--GQGLVYAIDI 366
L +EG +QDES+ L + ++D CAAPGGKT ++A+ L+ QG + A+DI
Sbjct: 233 LFREGKLTIQDESSMLAAPTLQIDESNQVLDACAAPGGKTTHIATFLNQQKQGKIIALDI 292
Query: 367 NKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCDKVLLDAPCSGLGVLSK 422
+ +L+++ E A QV+S+I+ D R + + D++L+DAPCSGLG++ +
Sbjct: 293 HDHKLKLIKENAVRMQVSSIIKLEKLDARKVKEVYPSEYFDRILVDAPCSGLGLMRR 349
>gi|334340862|ref|YP_004545842.1| sun protein [Desulfotomaculum ruminis DSM 2154]
gi|334092216|gb|AEG60556.1| sun protein [Desulfotomaculum ruminis DSM 2154]
Length = 453
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 101/314 (32%), Positives = 159/314 (50%), Gaps = 17/314 (5%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D T+I G +R +D ++ ++ ++ + ILR+G Y+I+ + +P
Sbjct: 41 DRAFATEITYGVLRNLNTIDWVLAHFL--KQPLAAQTAWIRNILRMGTYQILFMPRVPDS 98
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A +E+V LAK GA VNG+LR + +++ P P+ + +A +SH
Sbjct: 99 AACNESVELAKKYGHAGAAKFVNGVLRNIARQQNDLDYPDPETD-----PVNYIALKHSH 153
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSL 289
P W+V RW K G E+ + L NN ++R N+ K +TR DL+ +L V S
Sbjct: 154 PTWLVERWLKEFGFEQTVALCQANNRPALNTIRTNTLK-ITRPDLIRRLAEEGVEARESQ 212
Query: 290 HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 349
++ E + + G + KEGL VQDES+ LV ++P G ++D +APGGKT
Sbjct: 213 YVPEGLHI-NGFLSYRSLDSFKEGLFQVQDESSMLVAHALNPASGAKVLDVASAPGGKTT 271
Query: 350 YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH---ADLRTFADNSTVKCD 406
++A + G + A+DI+ +L ++ E V I +IH AD R + D
Sbjct: 272 HVAQLMGDSGEIIAVDIHSHKLELIKENC----VRLGITSIHGLVADARDLPQKYSGWAD 327
Query: 407 KVLLDAPCSGLGVL 420
VL+DAPCSGLGVL
Sbjct: 328 YVLVDAPCSGLGVL 341
>gi|187933697|ref|YP_001885416.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum B str. Eklund 17B]
gi|187721850|gb|ACD23071.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum B str. Eklund 17B]
Length = 438
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 109/324 (33%), Positives = 172/324 (53%), Gaps = 28/324 (8%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L++RD L+T+IV G +R ++ LD +I D K M+ +L ILR+ Y++ LD
Sbjct: 33 NLEERDKALLTEIVYGVLRRKKTLDLIIANFVRDIKL---MDHEVLNILRVAIYQMTFLD 89
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P YA +E V AK + P AG LVNGILR KD + + + GN + A
Sbjct: 90 KVPTYAACNEAVDEAK-KISPEAGKLVNGILRNFS--KDPDDITI---NGN---KINEYA 140
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
+S WM+R K G++ A K+MV N P ++R N K ++ +L +
Sbjct: 141 YKFSFEPWMIRLLIKQYGEDLAKKIMVGLNQIPQTTVRVNDTK-CEYNEVFEKLEEIGYC 199
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
E E I +K G ++ + L K+G VQDESA LV +++ + ++D C+AP
Sbjct: 200 VEEGFMCPEAILIKGG-SSIQENPLFKDGEITVQDESAMLVAPLLELENDMKVLDLCSAP 258
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV------IRTIHADLRTFA 398
GGKT ++A L G V A D+++ +L ++ E + +N+V ++ADL ++A
Sbjct: 259 GGKTTHIAELLQNTGEVRAFDLHESKLGLIKENCERLDLNNVKIEVGDATKLNADLVSYA 318
Query: 399 DNSTVKCDKVLLDAPCSGLGVLSK 422
D+VL+D PCSGLG++ K
Sbjct: 319 -------DRVLIDVPCSGLGIIRK 335
>gi|423448370|ref|ZP_17425249.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG5O-1]
gi|401128964|gb|EJQ36647.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG5O-1]
Length = 444
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 104/319 (32%), Positives = 170/319 (53%), Gaps = 20/319 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL-EGNDRAQARALA 224
+P A + E V +AK G +VNG+LR + +P L E D + A+A
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPSLDEIKDPVERLAIA 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
T SHPVW+V+ W G E A K+ N P + R N K VT + + L +
Sbjct: 145 T--SHPVWLVQDWASEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAIELLASEGIE 201
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
+ D+ I+++ G NV K+G ++QDES+ LV +DP G++++D CAAP
Sbjct: 202 AKSGDLSDDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALDPNEGETVLDSCAAP 259
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STV 403
GGKT ++A L G G V ++D++ ++R++ + A+ + + I T D R ++ +
Sbjct: 260 GGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLEN-IETKALDARKVQEHFANE 318
Query: 404 KCDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 319 TFDKILVDAPCSGFGVIRR 337
>gi|423378296|ref|ZP_17355580.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG1O-2]
gi|423441404|ref|ZP_17418310.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG4X2-1]
gi|423464478|ref|ZP_17441246.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG6O-1]
gi|423533820|ref|ZP_17510238.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuB2-9]
gi|423540911|ref|ZP_17517302.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuB4-10]
gi|423547149|ref|ZP_17523507.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuB5-5]
gi|423623059|ref|ZP_17598837.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD148]
gi|401172099|gb|EJQ79320.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuB4-10]
gi|401178870|gb|EJQ86043.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuB5-5]
gi|401259832|gb|EJR66006.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD148]
gi|401636562|gb|EJS54316.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG1O-2]
gi|402418065|gb|EJV50365.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG4X2-1]
gi|402420745|gb|EJV53016.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG6O-1]
gi|402464039|gb|EJV95739.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuB2-9]
Length = 444
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 104/319 (32%), Positives = 170/319 (53%), Gaps = 20/319 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL-EGNDRAQARALA 224
+P A + E V +AK G +VNG+LR + +P L E D + A+A
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPSLDEIKDPVERLAIA 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
T SHPVW+V+ W G E A K+ N P + R N K VT + + L +
Sbjct: 145 T--SHPVWLVQDWASEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAIELLASEGIE 201
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
+ D+ I+++ G NV K+G ++QDES+ LV +DP G++++D CAAP
Sbjct: 202 AKSGDLSDDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALDPNEGETVLDSCAAP 259
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STV 403
GGKT ++A L G G V ++D++ ++R++ + A+ + + I T D R ++ +
Sbjct: 260 GGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLEN-IETKALDARKVQEHFANE 318
Query: 404 KCDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 319 TFDKILVDAPCSGFGVIRR 337
>gi|110598393|ref|ZP_01386666.1| sun protein:transcription antitermination factor NusB [Chlorobium
ferrooxidans DSM 13031]
gi|110340002|gb|EAT58504.1| sun protein:transcription antitermination factor NusB [Chlorobium
ferrooxidans DSM 13031]
Length = 447
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 102/314 (32%), Positives = 162/314 (51%), Gaps = 18/314 (5%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L T +V G +R+R LD +I H + P+L ILR+G Y+I+ LD +P +
Sbjct: 39 DRALATGLVNGVLRYRLQLDFIISRYYHHK--LEKAAPVLKNILRLGLYQILFLDKVPDW 96
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A V+E V+LAK LVNG+LRK+ S+ L + +R + LA +SH
Sbjct: 97 AAVNECVKLAKKYKGDRMSKLVNGVLRKIT----PQSIALDEWL-KEREPSEQLAIKHSH 151
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSL 289
P W+V RW G ++ L+ +NN P F R N R + L +E
Sbjct: 152 PKWLVERWIADYGLKKTEALLTYNNRFPLFGFRIN-RLKTSEEQLFSDPLFSSAAYEACG 210
Query: 290 HLDEFIRVK-TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKT 348
+ FI + + + + G L VQ+ + L +++P PG +++D CAAPGGK+
Sbjct: 211 IENLFISKEFSTFEPAVSDGRL-----TVQNPTQALACLLLNPVPGSAVLDLCAAPGGKS 265
Query: 349 LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKV 408
+MA + G V ++D+ + +L + A+ + ++IRT+ AD R+F + + D +
Sbjct: 266 TFMAELMGNNGSVTSLDLYEQKLLKITTHAEALGI-TIIRTVAADARSFKPEN--RPDAI 322
Query: 409 LLDAPCSGLGVLSK 422
LLDAPCSG GV+ +
Sbjct: 323 LLDAPCSGSGVVGR 336
>gi|229129141|ref|ZP_04258114.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BDRD-Cer4]
gi|228654378|gb|EEL10243.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BDRD-Cer4]
Length = 429
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 103/318 (32%), Positives = 169/318 (53%), Gaps = 18/318 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 21 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 75
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+ T
Sbjct: 76 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAITT 130
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHPVW+V+ WT G E A K+ N P + R N K VT + + L +
Sbjct: 131 --SHPVWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAIELLASEGIEA 187
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+L D+ I+++ G NV K+G ++QDES+ LV ++P G +++D CAAPG
Sbjct: 188 KLGDLSDDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNTGDAVLDSCAAPG 245
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404
GKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 246 GKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFANET 304
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 305 FDKILVDAPCSGFGVIRR 322
>gi|392394789|ref|YP_006431391.1| ribosomal RNA small subunit methyltransferase RsmB
[Desulfitobacterium dehalogenans ATCC 51507]
gi|390525867|gb|AFM01598.1| ribosomal RNA small subunit methyltransferase RsmB
[Desulfitobacterium dehalogenans ATCC 51507]
Length = 453
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 114/364 (31%), Positives = 183/364 (50%), Gaps = 31/364 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDD-RDLRLVTDIV 119
RA++ L RI+ A+A+L+ +K DL+D R+ +L T +V
Sbjct: 7 RALAVQILQRIEEEKAYANLVMQKS------------------LHDLNDPRERQLTTLLV 48
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAV-VDENVRL 178
GT++ R LD+ L H K S + + ILRI ++I+ L P AV ++E V L
Sbjct: 49 NGTLKNRLTLDY--ALRRHLRKPLSQLPHEVRWILRISTFQILYLSRIPEAVAINEGVEL 106
Query: 179 AKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWT 238
K + +LVN +LR++ + S P +R R L+ YSHP WMV+RW
Sbjct: 107 TK-KHQGKYTSLVNSVLRRVFESSWDISWP-----SKEREPIRYLSLRYSHPEWMVKRWL 160
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVK 298
K G + L NN +R N+ K ++R L +L V L + E + ++
Sbjct: 161 KRYGMTDTEALCQANNEPAPVWIRTNTLK-ISREGLQERLEREGVKVTLGERVPESLVIE 219
Query: 299 TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 358
++ + +EGL VQDES+ L+ V++PQ GQ ++D C APGGKT ++A + +
Sbjct: 220 E-FGSLDKLPSFQEGLFTVQDESSQLIAHVLNPQAGQKVLDACGAPGGKTTHLAQRMENR 278
Query: 359 GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLG 418
G + A DI+ +++++ + + + ++I D R A KVL+DAPCSGLG
Sbjct: 279 GEILAFDIHPHKVKLIEDLSARLGI-TIIHPQAGDARELAGVEDSSYHKVLVDAPCSGLG 337
Query: 419 VLSK 422
V+ +
Sbjct: 338 VIRR 341
>gi|154497982|ref|ZP_02036360.1| hypothetical protein BACCAP_01962 [Bacteroides capillosus ATCC
29799]
gi|150272972|gb|EDN00129.1| ribosomal RNA small subunit methyltransferase B
[Pseudoflavonifractor capillosus ATCC 29799]
Length = 447
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 109/338 (32%), Positives = 170/338 (50%), Gaps = 29/338 (8%)
Query: 94 GYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQI 153
G++++TL R LD RD L T + G ++ R LD I FS+ P ++I
Sbjct: 28 GFLKKTL--REAGLDSRDAALATRLCFGVLQNRLLLDFYI-------GKFSTTRPEKMEI 78
Query: 154 -----LRIGFYEIVKLDMPPY-AVVDENVRLAKVALR-PGAGNLVNGILRKLVLLKDNNS 206
LR+G Y++ + P+ A V+E+V L K + P A +VNG+LR + N
Sbjct: 79 KVRNALRLGVYQMAFMTKIPHNAAVNESVELTKKHCKNPRAAGMVNGVLRNV----SRNI 134
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
LP +E R + L+ YSHP+W+VR +T LG EEA L+ +N P + + N+
Sbjct: 135 DRLPVIESGSREEY--LSIRYSHPLWLVREFTALLGSEEAEALLEADNGQPPITAQINTC 192
Query: 267 KGVTRADL--VMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGL 324
+ L + + + PH L + + V +G N+ +EGL +QD +A L
Sbjct: 193 RATMEQTLERLAEAGVEAQPHPW---LADCL-VLSGTGNLEHLTAFREGLFYIQDPAARL 248
Query: 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 384
V V DP+PG ++D CAAPGGKT A + G+G + + DI+ + +++ A+ N
Sbjct: 249 AVEVADPKPGMKVLDACAAPGGKTFASAIRMGGEGEIQSCDIHAHKEKLIQAGAERLGFN 308
Query: 385 SVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
I+T D + D V+ D PCSGLG++ K
Sbjct: 309 -CIKTAVMDGKKHRPAFENAFDVVIADVPCSGLGIIRK 345
>gi|335429783|ref|ZP_08556681.1| 16S rRNA methyltransferase B [Haloplasma contractile SSD-17B]
gi|334889793|gb|EGM28078.1| 16S rRNA methyltransferase B [Haloplasma contractile SSD-17B]
Length = 439
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 110/331 (33%), Positives = 172/331 (51%), Gaps = 33/331 (9%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPL---LLQILRIGF 158
++K++D D+ L+T+IV GTI+ + LD+ + K F M+ + ILRI
Sbjct: 30 IKSKEIDPVDVSLLTEIVYGTIQNKITLDYYL-------KDFIDMKKTKGWVKNILRISL 82
Query: 159 YEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDR 217
Y++ LD +P +A+++E V LAK +GN VN +LR N S K + +
Sbjct: 83 YQMHFLDKIPNHAILNEAVTLAKDRGGKNSGNFVNAVLR-------NISRKGLKSLDDIK 135
Query: 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQ 277
Q L+ SHP W+V W + G + KL NNS PS R N K + + L+ +
Sbjct: 136 DQTERLSIQTSHPRWLVSLWLEQYGLDTTTKLCNANNSRPSIHCRLNLTKDDSNS-LIKK 194
Query: 278 LNLLKVPHELSLH--LDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
L ++ E+S H ++E +++ G N+I L +G +QD S+ LV ++DP
Sbjct: 195 LEDQEI--EVSRHPFIEEGVKIIKG--NIIGTSLYTDGYLTIQDFSSMLVAKILDPSESD 250
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK---LHQVNSVIRTIHA 392
++D CAAPGGKT ++A +S G V A DI ++++++E L Q I+T
Sbjct: 251 DVLDTCAAPGGKTTHIAELMSNSGSVSACDIYDHKIKLIDEHVDRLGLKQ----IKTYKQ 306
Query: 393 DLRTFADNSTVKC-DKVLLDAPCSGLGVLSK 422
D R D+VL+DAPCSGLGV+ +
Sbjct: 307 DARELTKEFKAGTFDRVLIDAPCSGLGVIKR 337
>gi|30021953|ref|NP_833584.1| sun protein [Bacillus cereus ATCC 14579]
gi|29897509|gb|AAP10785.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus cereus ATCC 14579]
Length = 444
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 103/318 (32%), Positives = 169/318 (53%), Gaps = 18/318 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+ T
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAITT 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHPVW+V+ WT G E A K+ N P + R N K VT + + L +
Sbjct: 146 --SHPVWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAIELLASEGIEA 202
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+L D+ I+++ G NV K+G ++QDES+ LV ++P G +++D CAAPG
Sbjct: 203 KLGDLSDDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNTGDAVLDSCAAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404
GKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 261 GKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFANET 319
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 320 FDKILVDAPCSGFGVIRR 337
>gi|228902369|ref|ZP_04066525.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis IBL 4222]
gi|228857267|gb|EEN01771.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis IBL 4222]
Length = 429
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 168/318 (52%), Gaps = 18/318 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 21 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 75
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P ++ R LA
Sbjct: 76 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI------QREGVPSVDEIKDPVER-LAI 128
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHPVW+V+ WT G E A K+ N P + R N K VT + + L +
Sbjct: 129 AMSHPVWLVQEWTSAYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAIELLASEGIEA 187
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ D+ I+++ G NV K+G ++QDES+ LV ++P G++++D CAAPG
Sbjct: 188 KRGDLSDDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNEGETVLDSCAAPG 245
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404
GKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ S
Sbjct: 246 GKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFSNET 304
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 305 FDKILVDAPCSGFGVIRR 322
>gi|434376969|ref|YP_006611613.1| 16S rRNA methyltransferase B [Bacillus thuringiensis HD-789]
gi|401875526|gb|AFQ27693.1| 16S rRNA methyltransferase B [Bacillus thuringiensis HD-789]
Length = 444
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 168/318 (52%), Gaps = 18/318 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P ++ R LA
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI------QREGVPSVDEIKDPVER-LAI 143
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHPVW+V+ WT G E A K+ N P + R N K VT + + L +
Sbjct: 144 AMSHPVWLVQEWTSAYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAIELLASEGIEA 202
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ D+ I+++ G NV K+G ++QDES+ LV ++P G++++D CAAPG
Sbjct: 203 KRGDLSDDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNEGETVLDSCAAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404
GKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ S
Sbjct: 261 GKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFSNET 319
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 320 FDKILVDAPCSGFGVIRR 337
>gi|188588047|ref|YP_001920563.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum E3 str. Alaska E43]
gi|251779411|ref|ZP_04822331.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum E1 str. 'BoNT E Beluga']
gi|188498328|gb|ACD51464.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum E3 str. Alaska E43]
gi|243083726|gb|EES49616.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum E1 str. 'BoNT E Beluga']
Length = 438
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 109/324 (33%), Positives = 172/324 (53%), Gaps = 28/324 (8%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L++RD L+T+IV G +R ++ LD +I D K M+ +L ILR+ Y++ LD
Sbjct: 33 NLEERDKALLTEIVYGVLRRKKTLDLIIANFVRDIKL---MDHEVLNILRVAIYQMTFLD 89
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P YA +E V AK + P AG LVNGILR KD + + + GN + A
Sbjct: 90 KVPTYAACNEAVDEAK-KISPEAGKLVNGILRNFS--KDPDDITIS---GN---KINEYA 140
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
+S WM+R K G++ A K+MV N P ++R N K ++ +L +
Sbjct: 141 YKFSFEPWMIRLLIKQYGEDLAKKIMVGLNQIPQTTVRVNDTK-CEYDEVFEKLEEIGYC 199
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
E E I +K G ++ + L K+G VQDESA LV +++ + ++D C+AP
Sbjct: 200 VEEGFMCPEAILIKGG-SSIQENPLFKDGEITVQDESAMLVAPLLELENDMKVLDLCSAP 258
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV------IRTIHADLRTFA 398
GGKT ++A L G V A D+++ +L ++ E + +N+V ++ADL ++A
Sbjct: 259 GGKTTHIAELLQNTGEVRAFDLHESKLGLIKENCERLGLNNVKIEVGDATKLNADLVSYA 318
Query: 399 DNSTVKCDKVLLDAPCSGLGVLSK 422
D+VL+D PCSGLG++ K
Sbjct: 319 -------DRVLIDVPCSGLGIIRK 335
>gi|169831743|ref|YP_001717725.1| sun protein [Candidatus Desulforudis audaxviator MP104C]
gi|169638587|gb|ACA60093.1| sun protein [Candidatus Desulforudis audaxviator MP104C]
Length = 452
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 103/326 (31%), Positives = 164/326 (50%), Gaps = 22/326 (6%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH----DEKTFSSMEPLLLQILRIG 157
FR LD T++ GT+R LD ++ D+ +S ILR+G
Sbjct: 35 FRPSKLDRA---FATELAYGTLRTLNTLDWIVSRYLQQPLGDQTVWSR------NILRLG 85
Query: 158 FYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGND 216
Y++ +D +P A E V LAK PG VNG+LR + KD P P+ +
Sbjct: 86 AYQLFYMDKVPAGAACFEAVELAKKYGTPGTARFVNGVLRNVARHKDELQFPDPETD--- 142
Query: 217 RAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM 276
++ Y HP W+V+RW LG EE I L NN+ P ++R N+ + V R L +
Sbjct: 143 --LVTHISLKYFHPTWLVKRWLTELGPEETIALCQANNTIPPNTIRVNTLR-VDRDSLAV 199
Query: 277 QLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 336
+L + + E + + G ++ ++GL +QDES+ LV V+P G
Sbjct: 200 RLEQEGLTVRKTRFAPEGLEIG-GFVSMRALPSFQQGLFQIQDESSMLVAHAVNPARGVR 258
Query: 337 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396
I+D C+APGGKT ++A + +G++ A+DI++ +L+++++ + +++V T D R
Sbjct: 259 ILDACSAPGGKTTHLAQLMENEGIIKALDIHQHKLKLVSDNCRRLGIDNV-ETELLDARD 317
Query: 397 FADNSTVKCDKVLLDAPCSGLGVLSK 422
D VL+DAPCSGLGVL +
Sbjct: 318 LPGEFEGWADFVLVDAPCSGLGVLRR 343
>gi|386758297|ref|YP_006231513.1| protein RsmB [Bacillus sp. JS]
gi|384931579|gb|AFI28257.1| RsmB [Bacillus sp. JS]
Length = 447
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 176/323 (54%), Gaps = 16/323 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
++ +L D+D L+T++V GT++ + LD+++ + + ++P ++Q+LR+ Y++
Sbjct: 32 IKSNELSDQDRGLLTELVYGTLQNKIALDYMLKPFINKPQ---KVKPWVIQLLRLSLYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK+ G + VNG+LR + +P + +
Sbjct: 89 EYLEKIPDRAAIHEAVEIAKIRGHKGIASFVNGVLRSI------QREGVPSFDAIEDP-V 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R LAT SHP W+V+ W G + A K+ + P +LR N K RA+L+ Q+
Sbjct: 142 RRLATETSHPEWLVKEWADAYGFDAAEKICRIHLIPPKQTLRVNQMKA-DRAELLDQMAA 200
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ E ++ +++ G ++ + G ++QDES+ LV +DP+P ++++D
Sbjct: 201 EGIEVEKGDLAEDAVKLLKG--SIAGTHFFQNGEVSIQDESSMLVARALDPKPDETVLDA 258
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
CAAPGGK+ ++A + +G V ++D++K +++++ E A + ++I D R +
Sbjct: 259 CAAPGGKSAHIAELMKNKGSVTSLDLHKHKVKLIKEAADRLGL-TIIHAETMDARKAGET 317
Query: 401 -STVKCDKVLLDAPCSGLGVLSK 422
K D++L+DAPCSG GV+ +
Sbjct: 318 FENEKFDRILVDAPCSGFGVIRR 340
>gi|228966815|ref|ZP_04127859.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar sotto str. T04001]
gi|228792914|gb|EEM40472.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar sotto str. T04001]
Length = 429
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 168/318 (52%), Gaps = 18/318 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 21 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 75
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P ++ R LA
Sbjct: 76 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI------QREGVPSVDEIKDPVER-LAI 128
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHPVW+V+ WT G E A K+ N P + R N K VT + + L +
Sbjct: 129 AMSHPVWLVQEWTSAYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAIELLASEGIEA 187
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ D+ I+++ G NV K+G ++QDES+ LV ++P G++++D CAAPG
Sbjct: 188 KRGDLSDDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNEGETVLDSCAAPG 245
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404
GKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ S
Sbjct: 246 GKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFSNET 304
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 305 FDKILVDAPCSGFGVIRR 322
>gi|218899018|ref|YP_002447429.1| sun protein [Bacillus cereus G9842]
gi|402564793|ref|YP_006607517.1| 16S rRNA methyltransferase B [Bacillus thuringiensis HD-771]
gi|423359099|ref|ZP_17336602.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD022]
gi|423561729|ref|ZP_17538005.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MSX-A1]
gi|218546015|gb|ACK98409.1| sun protein [Bacillus cereus G9842]
gi|401084971|gb|EJP93217.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD022]
gi|401201986|gb|EJR08851.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MSX-A1]
gi|401793445|gb|AFQ19484.1| 16S rRNA methyltransferase B [Bacillus thuringiensis HD-771]
Length = 444
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 168/318 (52%), Gaps = 18/318 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P ++ R LA
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI------QREGVPSVDEIKDPVER-LAI 143
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHPVW+V+ WT G E A K+ N P + R N K VT + + L +
Sbjct: 144 AMSHPVWLVQEWTSAYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAIELLASEGIEA 202
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ D+ I+++ G NV K+G ++QDES+ LV ++P G++++D CAAPG
Sbjct: 203 KRGDLSDDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNEGETVLDSCAAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404
GKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ S
Sbjct: 261 GKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFSNET 319
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 320 FDKILVDAPCSGFGVIRR 337
>gi|423612082|ref|ZP_17587943.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD107]
gi|401247089|gb|EJR53433.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD107]
Length = 444
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 105/321 (32%), Positives = 169/321 (52%), Gaps = 24/321 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLR-----KKVEAWVRVLLRLSLYQMLYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P LE + R LA
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPSLEEIENPVER-LAI 143
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHP+W+V+ W G E A K+ N P + R N K VT + V L +
Sbjct: 144 ATSHPMWLVQEWASEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAVALLADEGIEA 202
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ ++ I+++ G NV K+G ++QDES+ LV ++P G +++D CAAPG
Sbjct: 203 KRGELSEDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNKGDAVLDSCAAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADNS 401
GKT ++A L G G V ++D++ ++R++ + AK + +V T+ D R FA+ S
Sbjct: 261 GKTTHIAERLDGTGKVMSLDLHAHKVRLIEQQAKRLGLENV-ETMALDARKVQEHFANES 319
Query: 402 TVKCDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 320 ---FDKILVDAPCSGFGVIRR 337
>gi|428279169|ref|YP_005560904.1| hypothetical protein BSNT_02587 [Bacillus subtilis subsp. natto
BEST195]
gi|291484126|dbj|BAI85201.1| hypothetical protein BSNT_02587 [Bacillus subtilis subsp. natto
BEST195]
Length = 447
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 175/323 (54%), Gaps = 16/323 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
++ +L D+D L+T++V GT++ + LD+++ + + ++P ++Q+LR+ Y++
Sbjct: 32 IKSNELSDQDRGLLTELVYGTLQNKIALDYMLKPFINKPQ---KVKPWVIQLLRLSLYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK+ G + VNG+LR + +P + +
Sbjct: 89 EYLEKIPDRAAIHEAVEIAKIRGHKGIASFVNGVLRSI------QREGVPSFDAIEDP-V 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R LAT SHP W+V+ W G E A K+ + P +LR N K RA+L+ Q+
Sbjct: 142 RRLATETSHPEWLVKEWADAYGFEAAEKICRIHLIPPKQTLRVNQMKA-DRAELLDQMAA 200
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ E ++ +++ G + + G ++QDES+ LV +DP+P ++++D
Sbjct: 201 EGIEVEKGDLAEDAVKLLKG--TIAGTHFFQNGEVSIQDESSMLVARALDPKPDETVLDA 258
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
CAAPGGK+ ++A + +G V ++D++K +++++ E A + ++I D R +
Sbjct: 259 CAAPGGKSAHIAELMQNKGSVTSLDLHKHKVKLIKEAADRLGL-TIIHAETMDARKAGET 317
Query: 401 -STVKCDKVLLDAPCSGLGVLSK 422
+ D++L+DAPCSG GV+ +
Sbjct: 318 FENEQFDRILVDAPCSGFGVIRR 340
>gi|321315340|ref|YP_004207627.1| 16S rRNA methyltransferase B [Bacillus subtilis BSn5]
gi|320021614|gb|ADV96600.1| 16S rRNA methyltransferase B [Bacillus subtilis BSn5]
Length = 447
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 175/323 (54%), Gaps = 16/323 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
++ +L D+D L+T++V GT++ + LD+++ + + ++P ++Q+LR+ Y++
Sbjct: 32 IKSNELSDQDRGLLTELVYGTLQNKIALDYMLKPFINKPQ---KVKPWVIQLLRLSLYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK+ G + VNG+LR + +P + +
Sbjct: 89 EYLEKIPDRAAIHEAVEIAKIRGHKGIASFVNGVLRSI------QREGVPSFDAIEDP-V 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R LAT SHP W+V+ W G E A K+ + P +LR N K RA+L+ Q+
Sbjct: 142 RRLATETSHPEWLVKEWADAYGFEAAEKICRIHLIPPKQTLRVNQMKA-DRAELLDQMAA 200
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ E ++ +++ G + + G ++QDES+ LV +DP+P ++++D
Sbjct: 201 EGIEVEKGDLAEDAVKLLKG--TIAGTHFFQNGEVSIQDESSMLVARALDPKPDETVLDA 258
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
CAAPGGK+ ++A + +G V ++D++K +++++ E A + ++I D R +
Sbjct: 259 CAAPGGKSAHIAELMKNKGSVTSLDLHKHKVKLIKEAADRLGL-TIIHAETMDARKAGET 317
Query: 401 -STVKCDKVLLDAPCSGLGVLSK 422
+ D++L+DAPCSG GV+ +
Sbjct: 318 FENEQFDRILVDAPCSGFGVIRR 340
>gi|193212287|ref|YP_001998240.1| sun protein [Chlorobaculum parvum NCIB 8327]
gi|193085764|gb|ACF11040.1| sun protein [Chlorobaculum parvum NCIB 8327]
Length = 428
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 107/332 (32%), Positives = 163/332 (49%), Gaps = 44/332 (13%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLIC-LLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
L+ D L ++V GT+++R D +I HD ++ +L ILR+G Y+++ LD
Sbjct: 33 LERNDRALARELVAGTLKYRLQCDFVIERFYRHD---YAKAAEVLKHILRLGVYQLLHLD 89
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG--NDRAQARA 222
+P A V+E+V+LA+ LVNG+LR L S LEG D +A+
Sbjct: 90 RVPRSAAVNESVKLARKFKGEHLAKLVNGLLRNL-------SKATIDLEGWTADLPEAKR 142
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
L+ +YS+P W+ RW G E A K++ + N P+ + R +NLLK
Sbjct: 143 LSILYSYPEWLTSRWIANYGAETAAKMLAYGNQPPATAYR---------------INLLK 187
Query: 283 VPHELSLHLDEFIRVK-----TGLQNVI-------QAGLLKEGLCAVQDESAGLVVAVVD 330
E L E K GL + LL++G+ +VQ+ + GL +
Sbjct: 188 SDPETLLATPELSDAKRVSDDEGLGSFFFSKSFDRMEPLLRDGVVSVQNPTQGLACLLAA 247
Query: 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTI 390
PQPG ++VD CAAPGGK+ +MA + +G + A+D ++ L A+ + ++I
Sbjct: 248 PQPGSTVVDLCAAPGGKSTFMAELMQNRGRIIALDRTPAKVERLASNAQALGI-TIIEPR 306
Query: 391 HADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
D TF V D VLLDAPC+G GVL +
Sbjct: 307 EGDALTFELEGAV--DTVLLDAPCTGTGVLGR 336
>gi|197119890|ref|YP_002140317.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter bemidjiensis
Bem]
gi|197089250|gb|ACH40521.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter bemidjiensis
Bem]
Length = 448
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 124/386 (32%), Positives = 193/386 (50%), Gaps = 60/386 (15%)
Query: 58 SPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDL-DDRDLRLVT 116
+P RA + L+RI+ +FAD+L D+E+ +KD+ D L+T
Sbjct: 5 NPRRAAFDI-LLRIEKEKSFADILI-------DHEL----------SKDIIKGADRGLLT 46
Query: 117 DIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQI-----LRIGFYEIVKLD-MPPYA 170
++V G +R + LD++I FS P L++ LR+G Y+ LD +P A
Sbjct: 47 ELVYGVLRRQGTLDYII-------SQFSKQRPEKLELFVRLLLRLGIYQCFFLDRVPVSA 99
Query: 171 VVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ--ARALATIYS 228
V+E V LAK L P A +N +LR +D + P DRA+ A LA YS
Sbjct: 100 AVNETVNLAK-ELAPRASGFINAVLRNADRGRDTIAYP-------DRAERPAEYLAARYS 151
Query: 229 HPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELS 288
HP W+ ++W LG E A +L + P ++R N+ + +TR +L+ +L V +
Sbjct: 152 HPAWLAQQWCDQLGLEAAEELAAAMSEPPPLTVRVNTLR-ITREELIQRLAGEGVSCSAT 210
Query: 289 LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKT 348
+ IR+ Q + + ++GL VQDES+ L + P G+ ++D CAAPGGKT
Sbjct: 211 SWSPDGIRLNQSGQ-ITRLPSFRDGLFTVQDESSQLAPLFLAPGKGERVLDACAAPGGKT 269
Query: 349 LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD-- 406
+A + G +YA D+N +LR++ ET +NSV RTF ++T +
Sbjct: 270 TQIAQLMQDSGEIYACDVNNKKLRLIKETCDRLGINSV--------RTFTMDATAPSNAI 321
Query: 407 ------KVLLDAPCSGLGVLSKTCVG 426
++L+DAPCSGLGV+ + G
Sbjct: 322 KETTFHRILVDAPCSGLGVIRRNPEG 347
>gi|389580156|ref|ZP_10170183.1| ribosomal RNA small subunit methyltransferase RsmB [Desulfobacter
postgatei 2ac9]
gi|389401791|gb|EIM64013.1| ribosomal RNA small subunit methyltransferase RsmB [Desulfobacter
postgatei 2ac9]
Length = 457
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 104/321 (32%), Positives = 166/321 (51%), Gaps = 15/321 (4%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEK-TFSSMEPLLLQILRIGFYEIVKLD 165
L ++ L IV G R R +D LI H K F ++P + ILR+G ++IV LD
Sbjct: 39 LSQKNRGLCHAIVFGVFRHRGRIDQLIG---HCSKLAFDRIDPKVKTILRLGVFQIVFLD 95
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A +D ++ LAK A +N +LR + + + + LP L+ N LA
Sbjct: 96 RVPDFAAIDTSIELAKAICGKKASGFINAVLRNIS--RSHKKIALPCLDKNLPGH---LA 150
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
+S P W+ +RW G+E+ + L P +LR N RK +R +L+ +
Sbjct: 151 AAFSIPSWLGKRWAARYGKEKTLTLAGALMDLPPLTLRVNPRKN-SREELIANFERAGIK 209
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
+++ ++V+T + EGL +QDE+A L V V+ P+P ++I+D CA
Sbjct: 210 SQITRFSPLGLQVRTPGIAIPDLPGFNEGLFQIQDEAAQLAVQVLAPKPCENILDACAGL 269
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT--FADNST 402
G KT +MA + +G + A D + + LN AK ++ +IRT H D+ F D S+
Sbjct: 270 GTKTCHMALEMGNKGNITANDTGERKAERLNTEAKRLNID-IIRTTHVDMAKAGFNDFSS 328
Query: 403 VKCDKVLLDAPCSGLGVLSKT 423
D+VL+DAPC+GLGVL++
Sbjct: 329 Y-FDRVLVDAPCTGLGVLARN 348
>gi|196038686|ref|ZP_03105994.1| sun protein [Bacillus cereus NVH0597-99]
gi|196030409|gb|EDX69008.1| sun protein [Bacillus cereus NVH0597-99]
Length = 444
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 103/318 (32%), Positives = 168/318 (52%), Gaps = 18/318 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+AT
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVN-EIKDPVERLAIAT 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHPVW+V+ WT G E A K+ N P + R N K +T + + L +
Sbjct: 146 --SHPVWLVQEWTAEYGLETAEKMCEVNMLPPVPTARVNVDK-ITVEEAITLLASEGIEA 202
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ D+ I+++ G NV K+G ++QDES+ LV ++P G I+D CAAPG
Sbjct: 203 KRGDLSDDAIQIEKG--NVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVILDSCAAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404
GKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 261 GKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFANET 319
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 320 FDKILVDAPCSGFGVIRR 337
>gi|384187925|ref|YP_005573821.1| sun protein [Bacillus thuringiensis serovar chinensis CT-43]
gi|410676239|ref|YP_006928610.1| ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis Bt407]
gi|423528274|ref|ZP_17504719.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuB1-1]
gi|452200304|ref|YP_007480385.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
gi|326941634|gb|AEA17530.1| sun protein [Bacillus thuringiensis serovar chinensis CT-43]
gi|402451937|gb|EJV83756.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuB1-1]
gi|409175368|gb|AFV19673.1| ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis Bt407]
gi|452105697|gb|AGG02637.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
Length = 444
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 103/318 (32%), Positives = 169/318 (53%), Gaps = 18/318 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+AT
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHPVW+V+ WT G E A K+ N P + R N K VT + + L +
Sbjct: 146 --SHPVWLVQEWTSAYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAIELLASEGIEA 202
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ D+ I+++ G NV K+G ++QDES+ LV ++P G +++D CAAPG
Sbjct: 203 KRGDLSDDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNTGDAVLDSCAAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404
GKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 261 GKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFANET 319
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 320 FDKILVDAPCSGFGVIRR 337
>gi|228940953|ref|ZP_04103512.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar berliner ATCC 10792]
gi|228973882|ref|ZP_04134458.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228980472|ref|ZP_04140782.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis Bt407]
gi|228779292|gb|EEM27549.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis Bt407]
gi|228785907|gb|EEM33910.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228818789|gb|EEM64855.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar berliner ATCC 10792]
Length = 429
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 103/318 (32%), Positives = 169/318 (53%), Gaps = 18/318 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 21 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 75
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+AT
Sbjct: 76 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT 130
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHPVW+V+ WT G E A K+ N P + R N K VT + + L +
Sbjct: 131 --SHPVWLVQEWTSAYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAIELLASEGIEA 187
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ D+ I+++ G NV K+G ++QDES+ LV ++P G +++D CAAPG
Sbjct: 188 KRGDLSDDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNTGDAVLDSCAAPG 245
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404
GKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 246 GKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFANET 304
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 305 FDKILVDAPCSGFGVIRR 322
>gi|374607065|ref|ZP_09679871.1| 16S rRNA methyltransferase B [Paenibacillus dendritiformis C454]
gi|374387337|gb|EHQ58853.1| 16S rRNA methyltransferase B [Paenibacillus dendritiformis C454]
Length = 445
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 101/329 (30%), Positives = 165/329 (50%), Gaps = 13/329 (3%)
Query: 96 VERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILR 155
+E + L+ D L T++V GTI+ +D ++ ++ + ++P + +LR
Sbjct: 10 LELNRALKEAQLERADAALATELVYGTIQRLNTIDGVLARKV--QRGLAKLKPWVRNLLR 67
Query: 156 IGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG 214
+ Y++ LD +PP+A V+E V +AK + G VNG+LR ++++ P +G
Sbjct: 68 MTAYQLRYLDRVPPHAAVNEAVAIAKRRGQQAMGGFVNGVLR--AIMREPELWTAPPADG 125
Query: 215 NDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL 274
+A +SHP W+V RW G+ E + NN P S R N R TR L
Sbjct: 126 ----PVSRIAWEHSHPEWLVARWIAAYGEAETAAMCAANNRPPHGSARVN-RLRSTREAL 180
Query: 275 VMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 334
+ ++ E S + I V G N+ + ++G +VQDES+ LVV + P+PG
Sbjct: 181 LAEMRADGYRAESSALSPDGI-VAAGAGNLAHSAWYRDGRLSVQDESSMLVVEALRPEPG 239
Query: 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 394
++DCCAAPGGK+ ++A + G V A DI+ ++ ++ E A + S +R + D
Sbjct: 240 MRVLDCCAAPGGKSTHIAERMGDMGEVTANDIHAHKVALIEEQAARLGLTS-MRVMSVDA 298
Query: 395 RTFADN-STVKCDKVLLDAPCSGLGVLSK 422
D VLLDAPC+G GV+ +
Sbjct: 299 AELGQALPQASFDVVLLDAPCTGFGVIRR 327
>gi|423483455|ref|ZP_17460145.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG6X1-2]
gi|401141006|gb|EJQ48561.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG6X1-2]
Length = 444
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 106/322 (32%), Positives = 170/322 (52%), Gaps = 26/322 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLR-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL-EGNDRAQARALA 224
+P A + E V +AK G +VNG+LR + +P L E D + A+A
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGIPSLDEIKDPVERLAIA 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
T SHP+W+V+ W G E A K+ N P + R N K VT + V L +
Sbjct: 145 T--SHPMWLVQEWASEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAVALLADEGIE 201
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
+ ++ I+++ G NV K G ++QDES+ LV ++P G +++D CAAP
Sbjct: 202 AKRGELSEDAIQIERG--NVAHTEAFKNGFLSIQDESSMLVARALEPNKGDAVLDSCAAP 259
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADN 400
GGKT ++A L G G V ++D++ ++R++ + AK + +V T+ D R FA+
Sbjct: 260 GGKTTHIAERLDGTGKVMSLDLHAHKVRLIEQQAKRLGLENV-ETMALDARKVQEHFANE 318
Query: 401 STVKCDKVLLDAPCSGLGVLSK 422
S DK+L+DAPCSG GV+ +
Sbjct: 319 S---FDKILVDAPCSGFGVIRR 337
>gi|229180141|ref|ZP_04307485.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
172560W]
gi|228603350|gb|EEK60827.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
172560W]
Length = 429
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 103/318 (32%), Positives = 169/318 (53%), Gaps = 18/318 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 21 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 75
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+AT
Sbjct: 76 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT 130
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHPVW+V+ WT G E A K+ N P + R N K VT + + L +
Sbjct: 131 --SHPVWLVQEWTSAYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAIELLASEGIEA 187
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ D+ I+++ G NV K+G ++QDES+ LV ++P G +++D CAAPG
Sbjct: 188 KRGDLSDDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNTGDAVLDSCAAPG 245
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404
GKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 246 GKTAHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFANET 304
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 305 FDKILVDAPCSGFGVIRR 322
>gi|30263868|ref|NP_846245.1| sun protein [Bacillus anthracis str. Ames]
gi|47529294|ref|YP_020643.1| sun protein [Bacillus anthracis str. 'Ames Ancestor']
gi|49186715|ref|YP_029967.1| sun protein [Bacillus anthracis str. Sterne]
gi|49478421|ref|YP_037926.1| sun protein [Bacillus thuringiensis serovar konkukian str. 97-27]
gi|118479087|ref|YP_896238.1| sun protein [Bacillus thuringiensis str. Al Hakam]
gi|165872297|ref|ZP_02216934.1| sun protein [Bacillus anthracis str. A0488]
gi|167636414|ref|ZP_02394713.1| sun protein [Bacillus anthracis str. A0442]
gi|167641141|ref|ZP_02399396.1| sun protein [Bacillus anthracis str. A0193]
gi|170688847|ref|ZP_02880050.1| sun protein [Bacillus anthracis str. A0465]
gi|170708813|ref|ZP_02899249.1| sun protein [Bacillus anthracis str. A0389]
gi|177654922|ref|ZP_02936639.1| sun protein [Bacillus anthracis str. A0174]
gi|190565749|ref|ZP_03018668.1| sun protein [Bacillus anthracis str. Tsiankovskii-I]
gi|196035830|ref|ZP_03103232.1| sun protein [Bacillus cereus W]
gi|196047441|ref|ZP_03114653.1| sun protein [Bacillus cereus 03BB108]
gi|218904995|ref|YP_002452829.1| sun protein [Bacillus cereus AH820]
gi|227813227|ref|YP_002813236.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. CDC 684]
gi|229603771|ref|YP_002868102.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. A0248]
gi|254683426|ref|ZP_05147286.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. CNEVA-9066]
gi|254721397|ref|ZP_05183186.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. A1055]
gi|254739848|ref|ZP_05197541.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. Kruger B]
gi|254751038|ref|ZP_05203077.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. Vollum]
gi|254756703|ref|ZP_05208732.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. Australia 94]
gi|301055356|ref|YP_003793567.1| sun protein [Bacillus cereus biovar anthracis str. CI]
gi|376267761|ref|YP_005120473.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
F837/76]
gi|386737687|ref|YP_006210868.1| Sun protein [Bacillus anthracis str. H9401]
gi|421507405|ref|ZP_15954325.1| 16S rRNA methyltransferase B [Bacillus anthracis str. UR-1]
gi|421639620|ref|ZP_16080211.1| 16S rRNA methyltransferase B [Bacillus anthracis str. BF1]
gi|423550386|ref|ZP_17526713.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
ISP3191]
gi|30258512|gb|AAP27731.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. Ames]
gi|47504442|gb|AAT33118.1| sun protein [Bacillus anthracis str. 'Ames Ancestor']
gi|49180642|gb|AAT56018.1| sun protein [Bacillus anthracis str. Sterne]
gi|49329977|gb|AAT60623.1| sun protein [Bacillus thuringiensis serovar konkukian str. 97-27]
gi|118418312|gb|ABK86731.1| sun protein [Bacillus thuringiensis str. Al Hakam]
gi|164711973|gb|EDR17513.1| sun protein [Bacillus anthracis str. A0488]
gi|167510921|gb|EDR86312.1| sun protein [Bacillus anthracis str. A0193]
gi|167528156|gb|EDR90943.1| sun protein [Bacillus anthracis str. A0442]
gi|170126298|gb|EDS95189.1| sun protein [Bacillus anthracis str. A0389]
gi|170667202|gb|EDT17962.1| sun protein [Bacillus anthracis str. A0465]
gi|172080433|gb|EDT65520.1| sun protein [Bacillus anthracis str. A0174]
gi|190562668|gb|EDV16634.1| sun protein [Bacillus anthracis str. Tsiankovskii-I]
gi|195991479|gb|EDX55445.1| sun protein [Bacillus cereus W]
gi|196021749|gb|EDX60444.1| sun protein [Bacillus cereus 03BB108]
gi|218535394|gb|ACK87792.1| sun protein [Bacillus cereus AH820]
gi|227005311|gb|ACP15054.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. CDC 684]
gi|229268179|gb|ACQ49816.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. A0248]
gi|300377525|gb|ADK06429.1| sun protein [Bacillus cereus biovar anthracis str. CI]
gi|364513561|gb|AEW56960.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
F837/76]
gi|384387539|gb|AFH85200.1| Sun protein [Bacillus anthracis str. H9401]
gi|401190002|gb|EJQ97052.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
ISP3191]
gi|401822539|gb|EJT21689.1| 16S rRNA methyltransferase B [Bacillus anthracis str. UR-1]
gi|403393285|gb|EJY90530.1| 16S rRNA methyltransferase B [Bacillus anthracis str. BF1]
Length = 444
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 103/318 (32%), Positives = 168/318 (52%), Gaps = 18/318 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+AT
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHPVW+V+ WT G E A K+ N P + R N K +T + + L +
Sbjct: 146 --SHPVWLVQEWTAEYGLETAEKMCEVNMLPPVPTARVNVDK-ITVEEAITLLASEGIEA 202
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ D+ I+++ G NV K+G ++QDES+ LV ++P G I+D CAAPG
Sbjct: 203 KRGDLSDDAIQIEKG--NVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVILDSCAAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404
GKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 261 GKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFANET 319
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 320 FDKILVDAPCSGFGVIRR 337
>gi|398310669|ref|ZP_10514143.1| 16S rRNA methyltransferase B [Bacillus mojavensis RO-H-1]
Length = 447
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 99/357 (27%), Positives = 187/357 (52%), Gaps = 26/357 (7%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
++ L D+D L+T++V GT++ + LD+++ + + ++P ++Q+LR+ Y++
Sbjct: 32 IKSNKLSDQDRGLLTELVYGTLQNKIALDYMLKPFINKPQ---KVKPWVIQLLRLSLYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P AV+ E V +AK G + VNG+LR + +P + +
Sbjct: 89 EYLEKIPDRAVIHEAVEIAKNRGHKGIASFVNGVLRSI------QREGVPSFDAIEDPVL 142
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R LAT SHP W+V+ W G + A K+ + P +LR N K RA+++ Q+
Sbjct: 143 R-LATETSHPEWLVKEWIAAYGFDAAEKICRIHLIPPKQTLRVNQMK-TDRAEILDQMAA 200
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ E ++ +++ G + + G ++QDES+ LV +DP+PG++++D
Sbjct: 201 EGIEAEKGDLAEDAVKLVKG--TIAGTHFFQTGEVSIQDESSMLVARALDPKPGETVLDA 258
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
CAAPGGK+ ++A + +G V ++D++K +++++ E ++ + S+I D R +
Sbjct: 259 CAAPGGKSAHIAELMENKGSVTSLDLHKHKVKLIKEASERLGL-SIIDAKTMDARKAGET 317
Query: 401 -STVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
+ + D++L+DAPCSG GV+ R ++Y KT L E + +L
Sbjct: 318 FESEQFDRILVDAPCSGFGVI----------RRKPDMKYTKTPNDSSRLAEIQLSIL 364
>gi|410658818|ref|YP_006911189.1| Ribosomal RNA small subunit methyltransferase B [Dehalobacter sp.
DCA]
gi|410661804|ref|YP_006914175.1| Ribosomal RNA small subunit methyltransferase B [Dehalobacter sp.
CF]
gi|409021173|gb|AFV03204.1| Ribosomal RNA small subunit methyltransferase B [Dehalobacter sp.
DCA]
gi|409024160|gb|AFV06190.1| Ribosomal RNA small subunit methyltransferase B [Dehalobacter sp.
CF]
Length = 471
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 117/362 (32%), Positives = 186/362 (51%), Gaps = 35/362 (9%)
Query: 65 AVRLM-RIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTI 123
AVR++ R++ GA+A+LL + + SG + RD L T +V G +
Sbjct: 29 AVRILTRVEKEGAYANLL-LRSQLSGLTQ----------------SRDRNLATALVNGVL 71
Query: 124 RWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVA 182
+ + LD+ L H K S++ + +LR G ++I+ +D +P A V+E+V L
Sbjct: 72 KNKLTLDY--ALRKHLNKPMSALPQEVRAVLRTGVFQILLMDRVPVPAAVNESVDLMN-Q 128
Query: 183 LRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLG 242
L LVN +LRK N P K E R L+ YSHP WM++RW G
Sbjct: 129 LNRTYSPLVNSVLRKAAETGWNFEWPDQKKE-----TVRYLSVRYSHPEWMIKRWLARWG 183
Query: 243 QEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKT--G 300
QEE L+ NN S+R N+ K TR +L L ++ + E + +K G
Sbjct: 184 QEETEALLKANNEPSLTSIRVNTLK-TTRQELKTLLESQEIEVADGEYTPESLILKDFGG 242
Query: 301 LQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGL 360
L + + + G AVQD+S+ L ++ + G S++D C+APGGKT ++A + +G
Sbjct: 243 LDQLWE---FQNGYFAVQDQSSQLAAHLLGAREGDSVLDVCSAPGGKTTHLAQLMKNKGT 299
Query: 361 VYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVL 420
+ A+D+ +L ++ E+A+ + ++I+T+ D R + K D+VL+DAPCSGLGVL
Sbjct: 300 IVAVDMYPQKLDLIKESAERLGI-TMIKTVEGDARIL-EGIGEKFDRVLVDAPCSGLGVL 357
Query: 421 SK 422
K
Sbjct: 358 RK 359
>gi|423385368|ref|ZP_17362624.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG1X1-2]
gi|401635424|gb|EJS53179.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG1X1-2]
Length = 444
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 103/318 (32%), Positives = 169/318 (53%), Gaps = 18/318 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+AT
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHPVW+V+ WT G E A K+ N P + R N K VT + + L +
Sbjct: 146 --SHPVWLVQEWTAAYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAIELLASEGIEA 202
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ D+ I+++ G NV K+G ++QDES+ LV ++P G +++D CAAPG
Sbjct: 203 KRGDLSDDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNTGDAVLDSCAAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404
GKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 261 GKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFANET 319
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 320 FDKILVDAPCSGFGVIRR 337
>gi|347525667|ref|YP_004832415.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus ruminis ATCC
27782]
gi|345284626|gb|AEN78479.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus ruminis ATCC
27782]
Length = 447
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 118/367 (32%), Positives = 188/367 (51%), Gaps = 45/367 (12%)
Query: 65 AVRLM-RIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGT 122
AV+L+ RI+ G++++L LN+ K S LD+RD+ L+T+IV G
Sbjct: 12 AVKLLERIEKNGSYSNLALNQTIKKS-----------------QLDERDVGLLTNIVYGV 54
Query: 123 IRWR----RYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVR 177
I+ + YLD I K +EP + ++L+ Y+ + LD +P A+ +E +
Sbjct: 55 IQRKLTLEFYLDGFI-------KNGRKVEPWVYELLKTALYQQLYLDKIPKRAIFNETIE 107
Query: 178 LAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRW 237
+AKV G V GIL ++ + LP P N + A ++ S P W+V +
Sbjct: 108 IAKVNGHEGIRRFVTGILHEI----ERKGLPDP---SNVKDSAEKISIESSTPKWLVEKL 160
Query: 238 TKYLGQEEAIKLMVWNNSDPSFSLRAN-SRKGVTRADLVMQLNLLKVPHELSLHLDEFIR 296
T+ LG E+ I L+ N P+ S+R N ++ V +A ++ KV L L +R
Sbjct: 161 TEELGFEKTISLLKSINEPPAQSIRVNLAKNTVHQAVSALEKEGFKVSKSLVSPLG--LR 218
Query: 297 VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS 356
V G + + K GL VQDESA L V +D + ++D CAAPGGKT+ +A+ L
Sbjct: 219 VSGGF--IPHSDAYKRGLVTVQDESAMLAVDSMDVKSTDVVLDGCAAPGGKTMQIAAVLD 276
Query: 357 GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAPCS 415
G VYA+DI+ ++ ++ + A+L V + + D R + + DKVL+DAPCS
Sbjct: 277 S-GRVYALDIHAHKVGLIEKNAELCGVTNYVTAKKTDARKAKEEFDEESFDKVLIDAPCS 335
Query: 416 GLGVLSK 422
GLG++ +
Sbjct: 336 GLGLMRR 342
>gi|423511899|ref|ZP_17488430.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuA2-1]
gi|402450160|gb|EJV81994.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuA2-1]
Length = 444
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 104/321 (32%), Positives = 170/321 (52%), Gaps = 24/321 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T++V GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEMVYGTIQRRDTLDYYLQPFLR-----KKVEAWVRVLLRLSLYQMLYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P LE + R LA
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPSLEEIENPVER-LAI 143
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHP+W+V+ W G E A K+ N P + R N K VT + V L +
Sbjct: 144 ATSHPMWLVQEWASEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAVALLADEGIEA 202
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ ++ I+++ G NV K+G ++QDES+ LV ++P+ G +++D CAAPG
Sbjct: 203 KRGELSEDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPKKGDTVLDSCAAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADNS 401
GKT ++A L G G V ++D++ ++R++ + AK + +V T+ D R FA+ S
Sbjct: 261 GKTTHIAERLDGTGKVMSLDLHAHKVRLIEQQAKRLGLENV-ETMALDARKVQEHFANES 319
Query: 402 TVKCDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 320 ---FDKILVDAPCSGFGVIRR 337
>gi|189499780|ref|YP_001959250.1| sun protein [Chlorobium phaeobacteroides BS1]
gi|189495221|gb|ACE03769.1| sun protein [Chlorobium phaeobacteroides BS1]
Length = 447
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 106/321 (33%), Positives = 167/321 (52%), Gaps = 26/321 (8%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-M 166
D D L T++V G +R+R LD +I L H + P+L ILR+G Y+++ LD +
Sbjct: 35 DKNDRSLATELVNGVLRYRLRLDFIISLSYHHD--LKKAAPVLRNILRLGAYQLLFLDKI 92
Query: 167 PPYAVVDENVRLA-KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
P +A VDE V LA K R AG +VNG+LR++ K + L ++ N+ R L+
Sbjct: 93 PGWAAVDECVSLAVKYKGRHIAG-IVNGVLRRIASEKGS----LDEILKNE-PLGRRLSL 146
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVT----RADLVMQLNLL 281
YSHP W+++RW K+ G+E + ++ NN P SLR N+ K +A +
Sbjct: 147 EYSHPEWLLQRWLKHYGEELTVAMLSSNNRAPLLSLRVNTLKTTPEIMGKALKDASVTFT 206
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
K E + +F T + I GL+ VQ+ + L ++DP P ++I+D C
Sbjct: 207 KAAPEQFMLTHDF----TACEPFIHLGLV-----TVQNPTQALPCLLLDPMPDETILDLC 257
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401
+APGGK +MA + +G + A+D + + + A+ + S+I TI + TF +
Sbjct: 258 SAPGGKATFMAELMKNKGSILAVDRYRNKCEKVMRRAQALGI-SIIETIADNAETFQPDK 316
Query: 402 TVKCDKVLLDAPCSGLGVLSK 422
+ +LLD PC+G GVL K
Sbjct: 317 --QPSAILLDVPCTGTGVLGK 335
>gi|217967819|ref|YP_002353325.1| sun protein [Dictyoglomus turgidum DSM 6724]
gi|217336918|gb|ACK42711.1| sun protein [Dictyoglomus turgidum DSM 6724]
Length = 430
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/319 (29%), Positives = 168/319 (52%), Gaps = 24/319 (7%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
DL ++ +T++V G RW+ LD++ + S +LL+++ Y +
Sbjct: 33 DLSLKEKHFITELVYGVTRWKITLDYIWSRFVRRD-NLSLFSKVLLRLVVYHVYFLKDTI 91
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDN---NSLPLPKLEGNDRAQARA 222
+P V+E V +AK + P L+N + R ++ K+N NS+PL
Sbjct: 92 LP--VAVNEIVEIAKKKV-PKEAKLINAVSRNIIREKNNLNLNSIPL------------- 135
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
Y P +++ W Y+G+ EA+K + W N + S+R N+ K +++ DL +L +
Sbjct: 136 -HIRYGVPDFILEEWFDYIGRGEAVKALSWLNRSHNVSIRVNTLK-ISKKDLKEKLLERR 193
Query: 283 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
+ + +D+ + ++ G + ++ L EG +Q E++ L +++P+PG ++D C+
Sbjct: 194 IKFKDGNLVDQALIIEDGF-DFERSDLFNEGYFVIQSEASMLPALILNPKPGNRVIDLCS 252
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402
APG K+ ++A + QG + ++DINK RLR++ E AK + S+I T D+ +
Sbjct: 253 APGLKSTHLAELMKNQGKIISVDINKNRLRLVEENAKRLGI-SIIETFSQDVLNLPSSLD 311
Query: 403 VKCDKVLLDAPCSGLGVLS 421
D+VLLDAPCSGLGV+S
Sbjct: 312 RSFDRVLLDAPCSGLGVIS 330
>gi|423522305|ref|ZP_17498778.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuA4-10]
gi|401174999|gb|EJQ82202.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuA4-10]
Length = 444
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 104/321 (32%), Positives = 169/321 (52%), Gaps = 24/321 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T++V GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDKKDIGLLTEMVYGTIQRRDTLDYYLQPFLR-----KKVEAWVRVLLRLSLYQMLYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P LE + R LA
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPSLEEIENPVER-LAI 143
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHP+W+V+ W G E A K+ N P + R N K VT + V L +
Sbjct: 144 ATSHPMWLVQEWASEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAVALLADEGIEA 202
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ ++ I+++ G NV K+G ++QDES+ LV ++P G +++D CAAPG
Sbjct: 203 KRGELSEDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNKGDAVLDSCAAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADNS 401
GKT ++A L G G V ++D++ ++R++ + AK + +V T+ D R FA+ S
Sbjct: 261 GKTTHIAERLDGTGKVMSLDLHAHKVRLIEQQAKRLGLENV-ETMALDARKVQEHFANES 319
Query: 402 TVKCDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 320 ---FDKILVDAPCSGFGVIRR 337
>gi|229111336|ref|ZP_04240889.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock1-15]
gi|228672112|gb|EEL27403.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock1-15]
Length = 429
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 103/318 (32%), Positives = 168/318 (52%), Gaps = 18/318 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 21 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 75
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+ T
Sbjct: 76 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAITT 130
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHPVW+V+ WT G E A K+ N P + R N K VT + + L +
Sbjct: 131 --SHPVWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAIELLASEGIEA 187
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ D+ I+++ G NV K+G ++QDES+ LV ++P G +++D CAAPG
Sbjct: 188 KRGDLSDDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNTGDAVLDSCAAPG 245
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404
GKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ S
Sbjct: 246 GKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFSNET 304
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 305 FDKILVDAPCSGFGVIRR 322
>gi|65321192|ref|ZP_00394151.1| COG0144: tRNA and rRNA cytosine-C5-methylases [Bacillus anthracis
str. A2012]
Length = 444
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 103/318 (32%), Positives = 167/318 (52%), Gaps = 18/318 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+AT
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHPVW+V+ WT G E A K+ N P + R N K +T + + L +
Sbjct: 146 --SHPVWLVQEWTAEYGLETAEKMCEVNMLPPVPTARVNVDK-ITVEEAITLLASEGIEA 202
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ D+ I++ G NV K+G ++QDES+ LV ++P G I+D CAAPG
Sbjct: 203 KRGDLSDDAIQIXKG--NVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVILDSCAAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404
GKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 261 GKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLXLENV-ETKALDARKVQEHFANEX 319
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 320 FDKILVDAPCSGFGVIRR 337
>gi|52141623|ref|YP_085206.1| sun protein [Bacillus cereus E33L]
gi|51975092|gb|AAU16642.1| sun protein [Bacillus cereus E33L]
Length = 444
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 168/318 (52%), Gaps = 18/318 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+AT
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHPVW+V+ WT G E A K+ N P + R N K +T + + L +
Sbjct: 146 --SHPVWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDK-ITVEEAITLLASEGIEA 202
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ D+ I+++ G NV K+G ++QDES+ LV ++P G ++D CAAPG
Sbjct: 203 KRGDLSDDAIQIEKG--NVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVVLDSCAAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404
GKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 261 GKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFANET 319
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 320 FDKILVDAPCSGFGVIRR 337
>gi|423615874|ref|ZP_17591708.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD115]
gi|401260411|gb|EJR66584.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD115]
Length = 444
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 105/320 (32%), Positives = 171/320 (53%), Gaps = 22/320 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL-EGNDRAQARALA 224
+P A + E V +AK G +VNG+LR + +P L E D + A+A
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPSLDEIKDPVERLAIA 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
T SHPVW+V+ W G E A K+ N P + R N K VT + + L +
Sbjct: 145 T--SHPVWLVQDWASEYGLETAEKMCKVNMLPPVPTARVNVDK-VTVEEAIELLASEGIE 201
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
+ D+ I+++ G NV K+G ++QDES+ LV ++P G++++D CAAP
Sbjct: 202 AKSGDLSDDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNEGETVLDSCAAP 259
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHA-DLRTFADNST 402
GGKT ++A L G G V ++D++ ++R++ + A +L N I+ + A ++ N T
Sbjct: 260 GGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENVEIKALDARKVQEHFANET 319
Query: 403 VKCDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 320 F--DKILVDAPCSGFGVIRR 337
>gi|86609413|ref|YP_478175.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86557955|gb|ABD02912.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 457
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 126/388 (32%), Positives = 186/388 (47%), Gaps = 52/388 (13%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L +I+ A+ADL+ +G++ L D LV+++V
Sbjct: 4 RQLALLALQKIERQNAYADLV-----------LGHL-----LANSSLIPADRHLVSELVY 47
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
G R RR LD LI C ++ P L IL +G Y++ LD +P A + +V LA
Sbjct: 48 GITRRRRTLDALID--CLAQRPAHKQPPDLRLILHLGLYQLAFLDQIPASAAIHTSVELA 105
Query: 180 KVALRPGAGNL---VNGILR--KLVLLKDNNSLPLPKLEGNDRAQA-RALATIYSHPVWM 233
+ G G+L VNGILR + +L PL LE A +AL +S P W+
Sbjct: 106 RQM---GLGSLTGVVNGILRAYQRQVLDQPEKDPLKPLEDTLPADPIQALGIRHSFPDWL 162
Query: 234 VRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDE 293
V W + LG E +L W N P LR N RAD+ + L +L + E
Sbjct: 163 VSLWWERLGPVETEQLCAWFNQPPHLDLRVNP----LRADVNKVIQALAAAGIPALPISE 218
Query: 294 F---IRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLY 350
+R++ ++ +G +VQD SA VV +DPQPG+ ++DCCAAPGGKT
Sbjct: 219 VPGALRLQDHAGDITALPGFAQGWWSVQDASAQQVVHWLDPQPGERVIDCCAAPGGKTTQ 278
Query: 351 MASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF---ADNST----- 402
+A + +G ++A+D + RLR L E + ++S IR + DL + AD +
Sbjct: 279 IAQHMQDRGEIWALDRHPHRLRRLEENRQRLGLSS-IRPLAIDLLSLSAAADRVSGTESL 337
Query: 403 --------VKCDKVLLDAPCSGLGVLSK 422
D+VLLDAPCSGLG L +
Sbjct: 338 PPAPLPPWQSADRVLLDAPCSGLGTLHR 365
>gi|225865846|ref|YP_002751224.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
03BB102]
gi|225787241|gb|ACO27458.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
03BB102]
Length = 444
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 168/318 (52%), Gaps = 18/318 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+AT
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHPVW+V+ WT G E A K+ N P + R N K +T + + L +
Sbjct: 146 --SHPVWLVQEWTAEYGLETAEKMCEVNMLPPVPTARVNVDK-ITVEEAITLLASEGIEA 202
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ D+ I+++ G NV K+G ++QDES+ L+ ++P G I+D CAAPG
Sbjct: 203 KRGDLSDDAIQIEKG--NVAHTDAFKKGFLSIQDESSMLIARALEPDEGDVILDSCAAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404
GKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 261 GKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFANET 319
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 320 FDKILVDAPCSGFGVIRR 337
>gi|407706324|ref|YP_006829909.1| transition state regulatory protein AbrB [Bacillus thuringiensis
MC28]
gi|407384009|gb|AFU14510.1| sun protein [Bacillus thuringiensis MC28]
Length = 444
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 103/319 (32%), Positives = 170/319 (53%), Gaps = 20/319 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL-EGNDRAQARALA 224
+P A + E V +AK G +VNG+LR + +P L E D + A+A
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPSLDEIKDPVERLAIA 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
T SHPVW+V+ W G E A K+ N P + R N K VT + + L +
Sbjct: 145 T--SHPVWLVQDWASEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAIELLASEGIE 201
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
+ D+ I+++ G NV K+G ++QDES+ LV ++P G++++D CAAP
Sbjct: 202 AKSGDLSDDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNEGETVLDSCAAP 259
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STV 403
GGKT ++A L G G V ++D++ ++R++ + A+ + + I T D R ++ +
Sbjct: 260 GGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLEN-IETKALDARKVQEHFANE 318
Query: 404 KCDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 319 TFDKILVDAPCSGFGVIRR 337
>gi|254735904|ref|ZP_05193610.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. Western North America USA6153]
Length = 444
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 103/318 (32%), Positives = 167/318 (52%), Gaps = 18/318 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+AT
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHPVW V+ WT G E A K+ N P + R N K +T + + L +
Sbjct: 146 --SHPVWFVQEWTAEYGLETAEKMCEVNMLPPVPTARVNVDK-ITVEEAITLLASEGIEA 202
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ D+ I+++ G NV K+G ++QDES+ LV ++P G I+D CAAPG
Sbjct: 203 KRGDLSDDAIQIEKG--NVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVILDSCAAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404
GKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 261 GKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFANET 319
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 320 FDKILVDAPCSGFGVIRR 337
>gi|423558572|ref|ZP_17534874.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MC67]
gi|401191840|gb|EJQ98862.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MC67]
Length = 444
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 104/321 (32%), Positives = 169/321 (52%), Gaps = 24/321 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T++V GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEMVYGTIQRRDTLDYYLQPFLR-----KKVEAWVRVLLRLSLYQMLYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P LE + R LA
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPSLEEIENPVER-LAI 143
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHP+W+V+ W G E A K+ N P + R N K VT + V L +
Sbjct: 144 ATSHPMWLVQEWASEYGLETAEKMCEINMLPPVPTARVNVDK-VTVEEAVALLADEGIEA 202
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ ++ I+++ G NV K+G ++QDES+ LV ++P G +++D CAAPG
Sbjct: 203 KRGELSEDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNKGDAVLDSCAAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADNS 401
GKT ++A L G G V ++D++ ++R++ + AK + +V T+ D R FA+ S
Sbjct: 261 GKTTHIAERLDGTGKVMSLDLHAHKVRLIEQQAKRLGLENV-ETMALDARKVQEHFANES 319
Query: 402 TVKCDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 320 ---FDKILVDAPCSGFGVIRR 337
>gi|420264395|ref|ZP_14767026.1| sun protein [Enterococcus sp. C1]
gi|394768368|gb|EJF48296.1| sun protein [Enterococcus sp. C1]
Length = 452
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 121/411 (29%), Positives = 206/411 (50%), Gaps = 65/411 (15%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ L+RI+ GGA+++LL ++ G L+D+D RL+T++V
Sbjct: 13 RFVALEALLRIEKGGAYSNLLLRELMNQGR----------------LNDKDGRLLTELVY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI + LD+ + K ++P + +LR+ Y+++ LD +P +A++ E V +A
Sbjct: 57 GTISRQLLLDYYLDRFI---KNARKVDPWVKTLLRLSLYQMLYLDKVPAHAIIHEAVDIA 113
Query: 180 KVALRPGAGNLVNGILR--------KLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPV 231
K PG G VNG+LR L L+KD P+ +L AT S P+
Sbjct: 114 KAKGNPGTGKFVNGVLRTIQRQGVPDLALIKD----PMERL-----------ATEISLPL 158
Query: 232 WMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV---PHELS 288
W+ ++ K +G EE +L + +P+ + + +++A + +L + P ELS
Sbjct: 159 WLTKKLVKQIGIEETSELG-YALFEPNHASGRIDLQRISQAAAIERLQEEGIDARPSELS 217
Query: 289 LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKT 348
+ + G + + L KEGL +QDES+ LV V+ ++D CAAPGGKT
Sbjct: 218 PY---GVVADKGF--MAGSSLYKEGLLTIQDESSMLVAPVLQVARNHQVLDACAAPGGKT 272
Query: 349 LYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKC 405
++A+ LS G V A+DI+ +++++ + A+ V +V+ T D R A + +
Sbjct: 273 THIAAFLSAAEGGKVTALDIHAHKVKLIQQNAQRLGVEAVVETRVMDARETAQTFAPEQF 332
Query: 406 DKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
D++L+DAPCSGLG++ R ++Y KT Q L + + +L
Sbjct: 333 DRILVDAPCSGLGLM----------RRKPDIKYSKTEADFQRLPQIQREIL 373
>gi|229061468|ref|ZP_04198813.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH603]
gi|229134673|ref|ZP_04263482.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BDRD-ST196]
gi|229168605|ref|ZP_04296328.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH621]
gi|228615011|gb|EEK72113.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH621]
gi|228648719|gb|EEL04745.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BDRD-ST196]
gi|228717891|gb|EEL69539.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH603]
Length = 415
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 104/321 (32%), Positives = 169/321 (52%), Gaps = 24/321 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T++V GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 7 IDRKDIGLLTEMVYGTIQRRDTLDYYLQPFLR-----KKVEAWVRVLLRLSLYQMLYLDR 61
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P LE + R LA
Sbjct: 62 VPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPSLEEIENPVER-LAI 114
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHP+W+V+ W G E A K+ N P + R N K VT + V L +
Sbjct: 115 ATSHPMWLVQEWASEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAVALLADEGIEA 173
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ ++ I+++ G NV K+G ++QDES+ LV ++P G +++D CAAPG
Sbjct: 174 KRGELSEDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNKGDTVLDSCAAPG 231
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADNS 401
GKT ++A L G G V ++D++ ++R++ + AK + +V T+ D R FA+ S
Sbjct: 232 GKTTHIAERLDGTGKVMSLDLHAHKVRLIEQQAKRLGLENV-ETMALDARKVQEHFANES 290
Query: 402 TVKCDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 291 ---FDKILVDAPCSGFGVIRR 308
>gi|257871148|ref|ZP_05650801.1| sun protein [Enterococcus gallinarum EG2]
gi|257805312|gb|EEV34134.1| sun protein [Enterococcus gallinarum EG2]
Length = 458
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 110/370 (29%), Positives = 191/370 (51%), Gaps = 41/370 (11%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ L+RI+ GGA+++LL ++ G L+D+D RL+T++V
Sbjct: 19 RFVALEALVRIERGGAYSNLLLRELMNQGR----------------LNDKDGRLLTEMVY 62
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI + LD+ + + K ++P + +LR+ Y+++ LD +P +A+++E V +A
Sbjct: 63 GTISRQLLLDYYLANFIKNAK---KVDPWVRSLLRLSLYQMLYLDKVPNHAILNEAVEIA 119
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
K PG G VNG+LR + +P L+ R LA S P+W+ R+
Sbjct: 120 KAKGNPGIGKFVNGVLRTI------QREGVPALDQIKDPLER-LAIEISMPLWLTERFVA 172
Query: 240 YLG----QEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFI 295
+G +E + L+V +++ L+ +TR + ++QL + S I
Sbjct: 173 QIGSDKTRELGLSLLVPSHASGRLDLQR-----ITRNEAILQLQEEGIEARESQLSPYGI 227
Query: 296 RVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL 355
G + + L +GL +QDES+ LV + P ++D CAAPGGKT ++AS L
Sbjct: 228 VADKGF--LAGSSLYHDGLLTIQDESSMLVAPALHIAPEHQVLDACAAPGGKTTHIASFL 285
Query: 356 SGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDA 412
S + G V A+DI+ +++++ E A+ V+ V++ D R A + + D++L+DA
Sbjct: 286 SAEAGGKVTALDIHPHKVKLITENAERLAVSEVVQAEVMDAREVAQHFEEQQFDRILVDA 345
Query: 413 PCSGLGVLSK 422
PCSGLG++ +
Sbjct: 346 PCSGLGLMRR 355
>gi|163941603|ref|YP_001646487.1| sun protein [Bacillus weihenstephanensis KBAB4]
gi|423489041|ref|ZP_17465723.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BtB2-4]
gi|423494766|ref|ZP_17471410.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
CER057]
gi|423498442|ref|ZP_17475059.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
CER074]
gi|423592139|ref|ZP_17568170.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD048]
gi|423598824|ref|ZP_17574824.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD078]
gi|423661295|ref|ZP_17636464.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VDM022]
gi|423669439|ref|ZP_17644468.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VDM034]
gi|423674382|ref|ZP_17649321.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VDM062]
gi|163863800|gb|ABY44859.1| sun protein [Bacillus weihenstephanensis KBAB4]
gi|401150859|gb|EJQ58311.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
CER057]
gi|401160491|gb|EJQ67869.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
CER074]
gi|401232272|gb|EJR38774.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD048]
gi|401237094|gb|EJR43551.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD078]
gi|401298566|gb|EJS04166.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VDM034]
gi|401301336|gb|EJS06925.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VDM022]
gi|401309933|gb|EJS15266.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VDM062]
gi|402432289|gb|EJV64348.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BtB2-4]
Length = 444
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 104/321 (32%), Positives = 169/321 (52%), Gaps = 24/321 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T++V GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEMVYGTIQRRDTLDYYLQPFLR-----KKVEAWVRVLLRLSLYQMLYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P LE + R LA
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPSLEEIENPVER-LAI 143
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHP+W+V+ W G E A K+ N P + R N K VT + V L +
Sbjct: 144 ATSHPMWLVQEWASEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAVALLADEGIEA 202
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ ++ I+++ G NV K+G ++QDES+ LV ++P G +++D CAAPG
Sbjct: 203 KRGELSEDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNKGDTVLDSCAAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADNS 401
GKT ++A L G G V ++D++ ++R++ + AK + +V T+ D R FA+ S
Sbjct: 261 GKTTHIAERLDGTGKVMSLDLHAHKVRLIEQQAKRLGLENV-ETMALDARKVQEHFANES 319
Query: 402 TVKCDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 320 ---FDKILVDAPCSGFGVIRR 337
>gi|423518555|ref|ZP_17495036.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuA2-4]
gi|401160763|gb|EJQ68138.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HuA2-4]
Length = 444
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 104/321 (32%), Positives = 169/321 (52%), Gaps = 24/321 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T++V GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEMVYGTIQRRDTLDYYLQPFLR-----KKVEAWVRVLLRLSLYQMLYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P LE + R LA
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPSLEEIENPVER-LAI 143
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHP+W+V+ W G E A K+ N P + R N K VT + V L +
Sbjct: 144 ATSHPMWLVQEWASEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAVALLADEGIEA 202
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ ++ I+++ G NV K+G ++QDES+ LV ++P G +++D CAAPG
Sbjct: 203 KRGELSEDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNKGDTVLDSCAAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADNS 401
GKT ++A L G G V ++D++ ++R++ + AK + +V T+ D R FA+ S
Sbjct: 261 GKTTHIAERLDGTGKVMSLDLHAHKVRLIEQQAKRLGLENV-ETMALDARKVQEHFANES 319
Query: 402 TVKCDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 320 ---FDKILVDAPCSGFGVIRR 337
>gi|357048821|ref|ZP_09110055.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
saccharolyticus 30_1]
gi|355384774|gb|EHG31832.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
saccharolyticus 30_1]
Length = 452
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 110/370 (29%), Positives = 191/370 (51%), Gaps = 41/370 (11%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ L+RI+ GGA+++LL ++ G L+D+D RL+T++V
Sbjct: 13 RFVALEALVRIERGGAYSNLLLRELMNQGR----------------LNDKDGRLLTEMVY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI + LD+ + + K ++P + +LR+ Y+++ LD +P +A+++E V +A
Sbjct: 57 GTISRQLLLDYYLANFIKNAK---KVDPWVRSLLRLSLYQMLYLDKVPNHAILNEAVEIA 113
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
K PG G VNG+LR + +P L+ R LA S P+W+ R+
Sbjct: 114 KAKGNPGIGKFVNGVLRTI------QREGVPALDQIKDPLER-LAIEISMPLWLTERFVA 166
Query: 240 YLG----QEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFI 295
+G +E + L+V +++ L+ +TR + ++QL + S I
Sbjct: 167 QIGSDKTRELGLSLLVPSHASGRLDLQR-----ITRNEAILQLQEEGIEARESQLSPYGI 221
Query: 296 RVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL 355
G + + L +GL +QDES+ LV + P ++D CAAPGGKT ++AS L
Sbjct: 222 VADKGF--LAGSSLYHDGLLTIQDESSMLVAPALHIAPEHQVLDACAAPGGKTTHIASFL 279
Query: 356 SGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDA 412
S + G V A+DI+ +++++ E A+ V+ V++ D R A + + D++L+DA
Sbjct: 280 SAEAGGKVTALDIHPHKVKLITENAERLAVSEVVQAEVMDAREVAQHFEEQQFDRILVDA 339
Query: 413 PCSGLGVLSK 422
PCSGLG++ +
Sbjct: 340 PCSGLGLMRR 349
>gi|384175316|ref|YP_005556701.1| ribosomal RNA small subunit methyltransferase B [Bacillus subtilis
subsp. subtilis str. RO-NN-1]
gi|349594540|gb|AEP90727.1| ribosomal RNA small subunit methyltransferase B [Bacillus subtilis
subsp. subtilis str. RO-NN-1]
Length = 447
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 91/323 (28%), Positives = 175/323 (54%), Gaps = 16/323 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
++ +L D+D L+T++V GT++ + LD+++ + + ++P ++Q+LR+ Y++
Sbjct: 32 IKSNELSDQDRGLLTELVYGTLQNKIALDYMLKPFINKPQ---KVKPWVIQLLRLSLYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK+ G + VNG+LR + +P + +
Sbjct: 89 EYLEKIPDRAAIHEAVEIAKIRGHKGIASFVNGVLRSI------QREGVPSFDAIEDP-V 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R LAT SHP W+V+ W G + A K+ + P +LR N K RA+L+ Q+
Sbjct: 142 RRLATETSHPEWLVKEWADAYGFDAAEKICRIHLIPPKQTLRVNQMKA-DRAELLDQMAA 200
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ E ++ +++ G + + G ++QDES+ LV +DP+P ++++D
Sbjct: 201 EGIEVEKGDLAEDAVKLLKG--TIAGTHFFQNGEVSIQDESSMLVARALDPKPDETVLDA 258
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
CAAPGGK+ ++A + +G V ++D++K +++++ E A + ++I D R +
Sbjct: 259 CAAPGGKSAHIAELMKNKGSVMSLDLHKHKVKLIKEAADRLGL-TIIHAETMDARKAGET 317
Query: 401 -STVKCDKVLLDAPCSGLGVLSK 422
+ D++L+DAPCSG GV+ +
Sbjct: 318 FENEQFDRILVDAPCSGFGVIRR 340
>gi|423367909|ref|ZP_17345341.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD142]
gi|423470079|ref|ZP_17446823.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG6O-2]
gi|401082770|gb|EJP91035.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD142]
gi|402437331|gb|EJV69355.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG6O-2]
Length = 444
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 104/321 (32%), Positives = 169/321 (52%), Gaps = 24/321 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T++V GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEMVYGTIQRRDTLDYYLQPFLR-----KKVEAWVRVLLRLSLYQMLYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P LE + R LA
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPSLEEIENPVER-LAI 143
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHP+W+V+ W G E A K+ N P + R N K VT + V L +
Sbjct: 144 ATSHPMWLVQEWASEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAVALLADEGIEA 202
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ ++ I+++ G NV K+G ++QDES+ LV ++P G +++D CAAPG
Sbjct: 203 KRGELSEDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNKGDAVLDSCAAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADNS 401
GKT ++A L G G V ++D++ ++R++ + AK + +V T+ D R FA+ S
Sbjct: 261 GKTTHIAERLDGTGKVMSLDLHAHKVRLIEQQAKRLGLENV-ETMALDARKVQEHFANES 319
Query: 402 TVKCDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 320 ---FDKILVDAPCSGFGVIRR 337
>gi|322418095|ref|YP_004197318.1| sun protein [Geobacter sp. M18]
gi|320124482|gb|ADW12042.1| sun protein [Geobacter sp. M18]
Length = 479
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 130/410 (31%), Positives = 206/410 (50%), Gaps = 53/410 (12%)
Query: 58 SPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDL-DDRDLRLVT 116
+P RA + L+RI+ +FAD+L D+E+ +KD+ D L+T
Sbjct: 35 NPRRAAFDI-LLRIEKEKSFADILI-------DHEL----------SKDMIKGADRGLLT 76
Query: 117 DIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDEN 175
++V G +R + LDH+I ++ +E +L +LR+G Y+ LD +P A V+E
Sbjct: 77 ELVYGVLRRQGTLDHIIGQF--SKQRTDKLELYVLLLLRLGLYQCFFLDRVPVSAAVNET 134
Query: 176 VRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA--LATIYSHPVWM 233
V+LAK L P A +N ILR +DN S P DRA+ LA YSHP W+
Sbjct: 135 VKLAK-ELAPRASGFINAILRNADRNRDNISYP-------DRAENPVGYLAVRYSHPAWL 186
Query: 234 VRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDE 293
+W + LG E A L + P F++R N+ + ++R L+ +L + + +
Sbjct: 187 TSQWCEQLGVEGAEALAAAMSEPPPFTIRVNTLR-ISREALMARLAEEGISCSETRWSPD 245
Query: 294 FIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMAS 353
IR+ Q + + ++GL VQDES+ L + P+ G ++D C+APGGKT +A
Sbjct: 246 GIRLNQSGQ-ITRLPSFRDGLFTVQDESSQLAPLFLSPEKGDRVLDACSAPGGKTTQIAQ 304
Query: 354 CLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST--------VKC 405
+ G +YA D+N +LR++ ET + SV RTF ++T V
Sbjct: 305 LMGNSGEIYACDVNHKKLRLIKETCDRLGITSV--------RTFTMDATSPSPAIKEVTF 356
Query: 406 DKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSF-LMQHLCETKYL 454
++L+DAPCSGLGV+ + G L+ +T ++++LC KYL
Sbjct: 357 QRILVDAPCSGLGVIRRNPEGKWSKSPDDLLQQARTQVTILENLC--KYL 404
>gi|257877736|ref|ZP_05657389.1| sun protein [Enterococcus casseliflavus EC20]
gi|257811902|gb|EEV40722.1| sun protein [Enterococcus casseliflavus EC20]
Length = 452
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 121/411 (29%), Positives = 206/411 (50%), Gaps = 65/411 (15%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ L+RI+ GGA+++LL ++ G L+D+D RL+T++V
Sbjct: 13 RFVALEALLRIEKGGAYSNLLLRELMNQGR----------------LNDKDGRLLTELVY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI + LD+ + K ++P + +LR+ Y+++ LD +P +A++ E V +A
Sbjct: 57 GTISRQLLLDYYLDRFI---KNARKVDPWVKTLLRLSLYQMLYLDKVPAHAIIHEAVDIA 113
Query: 180 KVALRPGAGNLVNGILR--------KLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPV 231
K PG G VNG+LR L L+KD P+ +L AT S P+
Sbjct: 114 KAKGNPGTGKFVNGVLRTIQRQGVPDLALIKD----PMERL-----------ATEISLPL 158
Query: 232 WMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV---PHELS 288
W+ ++ K +G EE +L + +P+ + + +++A + +L + P ELS
Sbjct: 159 WLTKKLVKQIGIEETSELG-YALFEPNHASGRIDLQRISQAAAIERLQEEGIDARPSELS 217
Query: 289 LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKT 348
+ + G + + L KEGL +QDES+ LV V+ ++D CAAPGGKT
Sbjct: 218 PY---GVVADKGF--MAGSSLYKEGLLTIQDESSMLVAPVLQVARDHQVLDACAAPGGKT 272
Query: 349 LYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKC 405
++A+ LS G V A+DI+ +++++ + A+ V +V+ T D R A + +
Sbjct: 273 THIAAFLSAAEGGKVTALDIHAHKVKLIQQNAQRLGVEAVVETRVMDARETAQTFAPEQF 332
Query: 406 DKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
D++L+DAPCSGLG++ R ++Y KT Q L + + +L
Sbjct: 333 DRILVDAPCSGLGLM----------RRKPDIKYSKTEADFQRLPQIQREIL 373
>gi|423452834|ref|ZP_17429687.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG5X1-1]
gi|401139393|gb|EJQ46955.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG5X1-1]
Length = 444
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 104/321 (32%), Positives = 169/321 (52%), Gaps = 24/321 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T++V GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEMVYGTIQRRDTLDYYLQPFLR-----KKVEAWVRVLLRLSLYQMLYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P LE + R LA
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPSLEEIENPVER-LAI 143
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHP+W+V+ W G E A K+ N P + R N K VT + V L +
Sbjct: 144 ATSHPMWLVQEWASEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAVALLAEEGIEA 202
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ ++ I+++ G NV K+G ++QDES+ LV ++P G +++D CAAPG
Sbjct: 203 KRGELSEDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNKGDAVLDSCAAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADNS 401
GKT ++A L G G V ++D++ ++R++ + AK + +V T+ D R FA+ S
Sbjct: 261 GKTTHIAERLDGTGKVMSLDLHVHKVRLIEQQAKRLGLENV-ETMALDARKVQEHFANES 319
Query: 402 TVKCDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 320 ---FDKILVDAPCSGFGVIRR 337
>gi|408418942|ref|YP_006760356.1| ribosomal RNA small subunit methyltransferase B RsmB [Desulfobacula
toluolica Tol2]
gi|405106155|emb|CCK79652.1| RsmB: ribosomal RNA small subunit methyltransferase B
[Desulfobacula toluolica Tol2]
Length = 452
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 96/319 (30%), Positives = 160/319 (50%), Gaps = 11/319 (3%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D L ++ G +R R +DH +C + PL L LRI ++I+ +D
Sbjct: 37 LSKNDKNLCNALIFGVLRHRESIDHTLCAFSNIPLIKIDTAPLYL--LRITLFQILYMDR 94
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A ++ V +AK +N +LR +LP PK E A+ ++
Sbjct: 95 IPAFAAINTAVDIAKKTSGKKTAGFINAVLRNAAKNNSKITLPDPKAE-----PAKFISI 149
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
YS P+W+ +W G E++ L N+ P +LR N+ K + R L +L+L+
Sbjct: 150 QYSLPLWLSGKWNHAFGFEKSSLLCRQINTIPPITLRTNTLK-IDRQSLAQKLSLVAKNI 208
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
EL+ + D+ + + + K GL +QDE+A +V ++ P+PG+ I+D CA G
Sbjct: 209 ELTEYADQGVSFTNPSILIREFEAFKLGLFQIQDEAAQIVTQLLAPRPGEKILDACAGLG 268
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD-LRTFADNSTVK 404
GKT ++A + +G++ A D+ +L L AK + +IRT + L+T +
Sbjct: 269 GKTGHIAQLMENKGIIIAADVEPKKLEFLESDAKKLGI-EIIRTKPINLLKTSIKDFDFY 327
Query: 405 CDKVLLDAPCSGLGVLSKT 423
D+VL+DAPC+GLGVL +
Sbjct: 328 FDRVLIDAPCTGLGVLRRN 346
>gi|47569491|ref|ZP_00240171.1| sun protein [Bacillus cereus G9241]
gi|47553820|gb|EAL12191.1| sun protein [Bacillus cereus G9241]
Length = 444
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 101/318 (31%), Positives = 168/318 (52%), Gaps = 18/318 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+AT
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHP+W+V+ WT G E A K+ N P + R N K +T + + L +
Sbjct: 146 --SHPIWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDK-ITVEEAIALLASEGIEA 202
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ D+ I+++ G NV K+G ++QDES+ LV ++P G ++D CAAPG
Sbjct: 203 KRGDLSDDAIQIEKG--NVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVVLDSCAAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404
GKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 261 GKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFANET 319
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 320 FDKILVDAPCSGFGVIRR 337
>gi|423574529|ref|ZP_17550648.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MSX-D12]
gi|423604508|ref|ZP_17580401.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD102]
gi|401212054|gb|EJR18800.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MSX-D12]
gi|401245128|gb|EJR51486.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD102]
Length = 444
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 101/318 (31%), Positives = 168/318 (52%), Gaps = 18/318 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+AT
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHP+W+V+ WT G E A K+ N P + R N K +T + + L +
Sbjct: 146 --SHPIWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDK-ITVEEAIALLASEGIEA 202
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ D+ I+++ G NV K+G ++QDES+ LV ++P G ++D CAAPG
Sbjct: 203 KRGDLSDDAIQIEKG--NVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVVLDSCAAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404
GKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 261 GKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLGNV-ETKALDARKVQEHFANET 319
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 320 FDKILVDAPCSGFGVIRR 337
>gi|228960081|ref|ZP_04121745.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar pakistani str. T13001]
gi|229047552|ref|ZP_04193142.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH676]
gi|229146436|ref|ZP_04274807.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BDRD-ST24]
gi|229152064|ref|ZP_04280259.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
m1550]
gi|229192034|ref|ZP_04319004.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
ATCC 10876]
gi|228591585|gb|EEK49434.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
ATCC 10876]
gi|228631413|gb|EEK88047.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
m1550]
gi|228637069|gb|EEK93528.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BDRD-ST24]
gi|228723799|gb|EEL75154.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH676]
gi|228799597|gb|EEM46550.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar pakistani str. T13001]
Length = 429
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 168/318 (52%), Gaps = 18/318 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 21 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 75
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+ T
Sbjct: 76 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAITT 130
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHPVW+V+ WT G E A K+ N P + R N K VT + + L +
Sbjct: 131 --SHPVWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAIELLASEGIEA 187
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ D+ I+++ G NV K+G ++QDES+ LV ++P G +++D CAAPG
Sbjct: 188 KRGDLSDDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNTGDAVLDSCAAPG 245
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404
GKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 246 GKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFANET 304
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 305 FDKILVDAPCSGFGVIRR 322
>gi|319649620|ref|ZP_08003776.1| sun protein [Bacillus sp. 2_A_57_CT2]
gi|317398782|gb|EFV79464.1| sun protein [Bacillus sp. 2_A_57_CT2]
Length = 451
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 106/327 (32%), Positives = 177/327 (54%), Gaps = 22/327 (6%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLD-HLICLLCHDEKTFSSMEPLLLQILRIGFY 159
+ ++D +D+ L+T++ GT++ R LD +L L ++K +E + Q+LR+ Y
Sbjct: 34 AIKKNEIDQKDIGLLTELTYGTLQRRMTLDFYLQPFLAGNKK----IESWVNQLLRLTLY 89
Query: 160 EIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRA 218
++V LD +P A + E V +AK G +VNG+LR + LP LE + +
Sbjct: 90 QMVFLDKIPDRAAIFEAVEIAKRWGHKGISGMVNGVLRNV------QRKGLPDLEQIEDS 143
Query: 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL 278
R L+ SHP W+V+RW LG EE K+ N + P + R N K +R + L
Sbjct: 144 VER-LSIETSHPAWLVKRWADQLGFEETKKMCEINLTAPLQTARVNEVKA-SREEC---L 198
Query: 279 NLLKVPHELSLHLDEFIRV--KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 336
+LLK + +FI V K N+ + + K+GL +QDES+ L + P +
Sbjct: 199 SLLK-EEGFEVEPSQFIPVAIKCLRGNLANSRVFKDGLITIQDESSMLAAYALGGNPNEK 257
Query: 337 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396
I+D CAAPGGKT ++A + G V ++D+++ +++++N+ A + S I+T D R
Sbjct: 258 ILDACAAPGGKTTHIAEKMQNTGQVISLDLHEHKVKLINDNADRLGL-SNIKTNALDSRK 316
Query: 397 FADNSTVKC-DKVLLDAPCSGLGVLSK 422
++ + D++L+DAPCSGLGV+ +
Sbjct: 317 VQEHYEKESFDRILVDAPCSGLGVMRR 343
>gi|423635364|ref|ZP_17611017.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD156]
gi|401278115|gb|EJR84051.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD156]
Length = 444
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 168/318 (52%), Gaps = 18/318 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+ T
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAITT 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHPVW+V+ WT G E A K+ N P + R N K VT + + L +
Sbjct: 146 --SHPVWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAIELLASEGIEA 202
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ D+ I+++ G NV K+G ++QDES+ LV ++P G +++D CAAPG
Sbjct: 203 KRGDLSDDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNTGDAVLDSCAAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404
GKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 261 GKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFANET 319
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 320 FDKILVDAPCSGFGVIRR 337
>gi|228954142|ref|ZP_04116170.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar kurstaki str. T03a001]
gi|229071363|ref|ZP_04204586.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
F65185]
gi|229081120|ref|ZP_04213630.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock4-2]
gi|228702164|gb|EEL54640.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock4-2]
gi|228711817|gb|EEL63769.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
F65185]
gi|228805462|gb|EEM52053.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar kurstaki str. T03a001]
Length = 429
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 168/318 (52%), Gaps = 18/318 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 21 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 75
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+ T
Sbjct: 76 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAITT 130
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHPVW+V+ WT G E A K+ N P + R N K VT + + L +
Sbjct: 131 --SHPVWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAIELLASEGIEA 187
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ D+ I+++ G NV K+G ++QDES+ LV ++P G +++D CAAPG
Sbjct: 188 KSGDLSDDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNTGDAVLDSCAAPG 245
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404
GKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 246 GKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFANET 304
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 305 FDKILVDAPCSGFGVIRR 322
>gi|423426001|ref|ZP_17403032.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG3X2-2]
gi|423437320|ref|ZP_17414301.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG4X12-1]
gi|423503457|ref|ZP_17480049.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HD73]
gi|449090808|ref|YP_007423249.1| ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar kurstaki str. HD73]
gi|401110748|gb|EJQ18647.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG3X2-2]
gi|401120475|gb|EJQ28271.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG4X12-1]
gi|402459678|gb|EJV91415.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
HD73]
gi|449024565|gb|AGE79728.1| ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar kurstaki str. HD73]
Length = 444
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 168/318 (52%), Gaps = 18/318 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+ T
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAITT 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHPVW+V+ WT G E A K+ N P + R N K VT + + L +
Sbjct: 146 --SHPVWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAIELLASEGIEA 202
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ D+ I+++ G NV K+G ++QDES+ LV ++P G +++D CAAPG
Sbjct: 203 KSGDLSDDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNTGDAVLDSCAAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404
GKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 261 GKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFANET 319
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 320 FDKILVDAPCSGFGVIRR 337
>gi|206971310|ref|ZP_03232261.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1134]
gi|218233863|ref|YP_002368666.1| sun protein [Bacillus cereus B4264]
gi|296504360|ref|YP_003666060.1| sun protein [Bacillus thuringiensis BMB171]
gi|423412330|ref|ZP_17389450.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG3O-2]
gi|423431885|ref|ZP_17408889.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG4O-1]
gi|423585726|ref|ZP_17561813.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD045]
gi|423628958|ref|ZP_17604707.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD154]
gi|423641054|ref|ZP_17616672.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD166]
gi|423649728|ref|ZP_17625298.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD169]
gi|423656724|ref|ZP_17632023.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD200]
gi|206734082|gb|EDZ51253.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1134]
gi|218161820|gb|ACK61812.1| sun protein [Bacillus cereus B4264]
gi|296325412|gb|ADH08340.1| sun protein [Bacillus thuringiensis BMB171]
gi|401104398|gb|EJQ12375.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG3O-2]
gi|401116641|gb|EJQ24479.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG4O-1]
gi|401233072|gb|EJR39568.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD045]
gi|401268503|gb|EJR74551.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD154]
gi|401280115|gb|EJR86037.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD166]
gi|401283008|gb|EJR88905.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD169]
gi|401290465|gb|EJR96159.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD200]
Length = 444
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 168/318 (52%), Gaps = 18/318 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+ T
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAITT 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHPVW+V+ WT G E A K+ N P + R N K VT + + L +
Sbjct: 146 --SHPVWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAIELLASEGIEA 202
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ D+ I+++ G NV K+G ++QDES+ LV ++P G +++D CAAPG
Sbjct: 203 KRGDLSDDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNTGDAVLDSCAAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404
GKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 261 GKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFANET 319
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 320 FDKILVDAPCSGFGVIRR 337
>gi|456012702|gb|EMF46390.1| Ribosomal RNA small subunit methyltransferase B [Planococcus
halocryophilus Or1]
Length = 403
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 169/314 (53%), Gaps = 24/314 (7%)
Query: 114 LVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVV 172
++T+I GT++ + LD+ + + +EP + +LR+ Y+IV LD +P +AVV
Sbjct: 1 MLTEITYGTLQHQMTLDYYL-----EPYLKGKIEPWVKILLRLSLYQIVYLDRIPAHAVV 55
Query: 173 DENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQARALATIYSHP 230
E V +AK G ++VNG+LR + ++ N++ P ++ SHP
Sbjct: 56 HEAVEIAKRRGHGGVASVVNGVLRSVQRNGVRSFNTISDP---------YEKISIETSHP 106
Query: 231 VWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANS-RKGVTRA-DLVMQLNLLKVPHELS 288
WM+RRW + G E+ ++ + NN P ++R N+ R V A +++ L VP ++
Sbjct: 107 EWMIRRWAEQFGLEKTREMALENNKTPLQTVRVNTVRATVEEAIEMLESEELEAVPSKM- 165
Query: 289 LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKT 348
+ E + V G + ++G +QDES+ L + +PG +++D CAAPGGKT
Sbjct: 166 --IPECLVVTNG--QPARTTTFEKGFITIQDESSMLPAYALQVEPGMTVLDMCAAPGGKT 221
Query: 349 LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKV 408
++A + G +YA+D+++ ++++++E A+ + T+ ++ K D++
Sbjct: 222 THIAEKMKNSGTLYALDLHQHKVKLIDENAERLGHTVIESTVGDGKQSVERFGEEKFDRI 281
Query: 409 LLDAPCSGLGVLSK 422
L+DAPCSGLGV+ +
Sbjct: 282 LVDAPCSGLGVIKR 295
>gi|434388910|ref|YP_007099521.1| ribosomal RNA small subunit methyltransferase RsmB [Chamaesiphon
minutus PCC 6605]
gi|428019900|gb|AFY95994.1| ribosomal RNA small subunit methyltransferase RsmB [Chamaesiphon
minutus PCC 6605]
Length = 468
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 109/328 (33%), Positives = 164/328 (50%), Gaps = 24/328 (7%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L T++V G IR +R LD +I L ++ P L Q+LR+G Y++ LD +P
Sbjct: 37 DRNLFTELVNGIIRRKRTLDAIIDRLA--KQPAHRQPPDLRQLLRLGLYQLRYLDRIPAS 94
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A V+ V LAK G +VNGILR+ + L+ S ++ L T++S
Sbjct: 95 AAVNTTVDLAKANGLTGLAGVVNGILRQYIRLQTERS----EVLDLSTDPIERLGTLHSF 150
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK-------GVTRADLVM--QLNL 280
P W+V +W LG+ E +L N PS LR NS ++ D + + L
Sbjct: 151 PDWLVAQWFAELGELETDRLCQAFNRPPSIDLRINSLTIDPNLLASASKFDRIQAQRTKL 210
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLL------KEGLCAVQDESAGLVVAVVDPQPG 334
+++ + V GL+ V G + +EG +QD SA LV ++ PQP
Sbjct: 211 IELFQAADIKAVPIPHVPQGLRFVGNVGAIDRLPGYREGWWTIQDSSAQLVTHLLAPQPN 270
Query: 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 394
+ ++D CAAPGGKT ++A + G V A+D RL+ L + Q+++ I+ I D
Sbjct: 271 EIVIDACAAPGGKTTHIAELMGNTGQVLALDKTASRLKKLQQNLDRLQLSN-IKVITGDS 329
Query: 395 RTFADNSTVKCDKVLLDAPCSGLGVLSK 422
F++ T D+VLLDAPCSGLG L +
Sbjct: 330 CGFSE-LTNTADRVLLDAPCSGLGTLHR 356
>gi|365159358|ref|ZP_09355539.1| ribosomal RNA small subunit methyltransferase B [Bacillus sp.
7_6_55CFAA_CT2]
gi|363625356|gb|EHL76397.1| ribosomal RNA small subunit methyltransferase B [Bacillus sp.
7_6_55CFAA_CT2]
Length = 444
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 168/318 (52%), Gaps = 18/318 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+ T
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAITT 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHPVW+V+ WT G E A K+ N P + R N K VT + + L +
Sbjct: 146 --SHPVWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAIELLASEGIEA 202
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ D+ I+++ G NV K+G ++QDES+ LV ++P G +++D CAAPG
Sbjct: 203 KSGDLSDDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNTGDAVLDSCAAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404
GKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 261 GKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFANET 319
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 320 FDKILVDAPCSGFGVIRR 337
>gi|301063983|ref|ZP_07204448.1| ribosomal RNA small subunit methyltransferase B [delta
proteobacterium NaphS2]
gi|300441894|gb|EFK06194.1| ribosomal RNA small subunit methyltransferase B [delta
proteobacterium NaphS2]
Length = 447
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 106/346 (30%), Positives = 172/346 (49%), Gaps = 19/346 (5%)
Query: 84 KGKGSGDNEMGYVERTLGF---RTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDE 140
K S N G ER L F + + +RD +V G +RW+ LD + L +
Sbjct: 8 KSLNSVTNAPGGAERRLEFLFSKNPHISERDRAFAVHLVQGVLRWQIRLDWI--LKQYVR 65
Query: 141 KTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLV 199
F ++P +L ILR+ ++I+ LD +P A V+E V+ A R VNGILR++
Sbjct: 66 FPFGKIDPEVLDILRLALFQIIFLDRVPDSAAVNEAVKQADKKGRKHVARFVNGILRQIC 125
Query: 200 LLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSF 259
++ LP P E R R++ +++P+W+V++WT+ LG + A++LM N P
Sbjct: 126 --REKGQLPYPHSE-KQRDFYRSV--YHAYPMWLVKKWTRELGPDMALRLMETGNQTPRL 180
Query: 260 SLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQD 319
+R N+ + TR DL+ +L + + E I + +V + KEG VQ
Sbjct: 181 VVRTNTLRN-TREDLLERLEKENIEARAVPYAPEGIELTRVGGSVSRLRSFKEGRFQVQG 239
Query: 320 ESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRIL---NE 376
E+A + ++ P ++D CA GGK+ +MA + +G + A+D + RLR L E
Sbjct: 240 EAAQICARLLSPGKSHRVLDMCAGLGGKSTHMAQLMGDRGWILALDTSIPRLRGLKRNTE 299
Query: 377 TAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
+ ++ V+ A L F K ++D+PCSGLGV+SK
Sbjct: 300 RLGIRSISPVVADATASLSCFRS----VFHKSMVDSPCSGLGVISK 341
>gi|210622413|ref|ZP_03293145.1| hypothetical protein CLOHIR_01093 [Clostridium hiranonis DSM 13275]
gi|210154229|gb|EEA85235.1| hypothetical protein CLOHIR_01093 [Clostridium hiranonis DSM 13275]
Length = 441
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 102/322 (31%), Positives = 164/322 (50%), Gaps = 13/322 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F+ + + D+D L T++V G I R+YLD +I L + M + ILR+G Y+I
Sbjct: 29 FKNEKISDKDKGLATELVYGVIENRKYLDFIINKLSKIK--VKKMSSFVKIILRMGTYQI 86
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD + +A V+E V+LA G VN ILR + + ++ +E
Sbjct: 87 LFLDKIEDHAAVNETVKLASKYDGKSKG-FVNAILRNEI--RQKRTIKYIDIED----PI 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R LA YS+ W+V W K G E A +L+ N P +R N+ K + R L+ +
Sbjct: 140 RRLAVKYSYQQWIVEDWVKNFGIEFAEELLEALNERPDLYVRTNTLK-IDRNSLLKEFEK 198
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ ++ +E I V+ + + + L KEGL VQD S+ LV VV P+ G ++D
Sbjct: 199 EGIKASKAMLPEEAIMVEN-FKGIESSRLYKEGLFTVQDISSMLVAKVVAPKEGDMVLDM 257
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
C+APGGK+ +MA + G + + D+ + +++++ AK + + I D +N
Sbjct: 258 CSAPGGKSTHMAELMKNTGKIVSRDVFEHKIKVIKAAAKRLGITN-IEAEEFDAANLDEN 316
Query: 401 STVKCDKVLLDAPCSGLGVLSK 422
S K D VL D PCSGLG++ +
Sbjct: 317 SIEKFDCVLTDVPCSGLGIIRR 338
>gi|253702184|ref|YP_003023373.1| sun protein [Geobacter sp. M21]
gi|251777034|gb|ACT19615.1| sun protein [Geobacter sp. M21]
Length = 448
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 124/386 (32%), Positives = 192/386 (49%), Gaps = 60/386 (15%)
Query: 58 SPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDL-DDRDLRLVT 116
+P RA + L+RI+ +FAD+L D+E+ +KD+ D L+T
Sbjct: 5 NPRRAAFDI-LLRIEKEKSFADILI-------DHEL----------SKDIIKGADRGLLT 46
Query: 117 DIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQI-----LRIGFYEIVKLD-MPPYA 170
++V G +R + LD++I FS P L++ LR+G Y+ LD +P A
Sbjct: 47 ELVYGVLRRQGTLDYII-------SQFSKQRPEKLELFVRLLLRLGIYQCFFLDRVPVSA 99
Query: 171 VVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ--ARALATIYS 228
V+E V LAK L P A +N +LR +D + P DRA A LA YS
Sbjct: 100 AVNETVNLAK-ELAPRASGFINAVLRNADRGRDTITYP-------DRAARPAEYLAARYS 151
Query: 229 HPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELS 288
HP W+ ++W LG E A +L + P ++R N+ + +TR +L+ +L V +
Sbjct: 152 HPAWLAQQWCDQLGLEAAEELAAAMSEPPPLTVRVNTLR-ITREELIRRLVGEGVSCSAT 210
Query: 289 LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKT 348
+ IR+ Q + + ++GL VQDES+ L + P G+ ++D CAAPGGKT
Sbjct: 211 SWSPDGIRLNQSGQ-ITRLPSFRDGLFTVQDESSQLAPLFLAPGKGERVLDACAAPGGKT 269
Query: 349 LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD-- 406
+A + G +YA D+N +LR++ ET +NSV RTF ++T +
Sbjct: 270 TQIAQLMQDSGEIYACDVNNKKLRLIKETCDRLGINSV--------RTFTMDATAPSNAI 321
Query: 407 ------KVLLDAPCSGLGVLSKTCVG 426
++L+DAPCSGLGV+ + G
Sbjct: 322 KETTFHRILVDAPCSGLGVIRRNPEG 347
>gi|326790876|ref|YP_004308697.1| sun protein [Clostridium lentocellum DSM 5427]
gi|326541640|gb|ADZ83499.1| sun protein [Clostridium lentocellum DSM 5427]
Length = 445
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 95/335 (28%), Positives = 170/335 (50%), Gaps = 13/335 (3%)
Query: 90 DNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPL 149
+ E Y + L +D+D +D VT++V GT++++ LD+++ + M+PL
Sbjct: 17 EKEASYAQLVLKRALQDIDAKDKGFVTEVVYGTLKYQIKLDYILNQF--SKTPVHRMKPL 74
Query: 150 LLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLP 208
+ ++R+ Y+++ LD +P A+++E V++ K VNG+LR + ++ P
Sbjct: 75 IRNVMRMSLYQMLYLDKVPTSAIINEAVKIVKKRKFQNLSGFVNGLLRNIDRQREQIIYP 134
Query: 209 LPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKG 268
+ A++ Y+ P WM+ W K +EE + N R N+ K
Sbjct: 135 -----DETKNLVLAMSIHYAIPEWMIEEWLKVYKEEEVKSICEALNERAEVCARYNTLK- 188
Query: 269 VTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAV 328
+ + L + + + L+E +K G+ N+ + K+G VQDESA LV V
Sbjct: 189 TNKLEFEETLKVEGIQLKEGAFLEEAFYLK-GVDNLQNSPSFKKGEWTVQDESAMLVAHV 247
Query: 329 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 388
+ PQ G I+D C+APGGK+++MA + G + + DI+ +L ++ + A+ + +
Sbjct: 248 MAPQKGDCILDMCSAPGGKSIHMAELMENAGRIVSCDIHPHKLELIKKNAERMGITIIEP 307
Query: 389 TIHADLRTFADNSTVKC-DKVLLDAPCSGLGVLSK 422
T+ T + V+ DKVLLDAPCSGLG++ +
Sbjct: 308 TLQDG--TLKNECYVEAFDKVLLDAPCSGLGIMKR 340
>gi|304404144|ref|ZP_07385806.1| sun protein [Paenibacillus curdlanolyticus YK9]
gi|304347122|gb|EFM12954.1| sun protein [Paenibacillus curdlanolyticus YK9]
Length = 521
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 101/321 (31%), Positives = 165/321 (51%), Gaps = 13/321 (4%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L D L T++V GT++ R LDH + L K +EP +LQ+LR+ Y+++ LD
Sbjct: 97 ELSRADAGLATELVYGTLQRRLSLDHALSALA--AKGLGKLEPWVLQLLRLSAYQLLFLD 154
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A V+E V +AK G +VNG+LR L L+ + L + A +A
Sbjct: 155 RIPAHAAVNEAVAIAKRRGHSGISGMVNGMLRNL--LRRRDELAPEAAAESAARPALRIA 212
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
+S+P W+V RW G+ A ++ N+ P S+R N R TR + + L +
Sbjct: 213 LRHSYPEWLVARWIAAYGEAAAEQICAAGNAPPHASIRVN-RLRATREEAIAILAESGIE 271
Query: 285 HELSLHLDEFIRVKTG--LQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
S + + G L + I ++G +QDES+ LV P G +++DCCA
Sbjct: 272 AAKSAVSPAGVVAQRGGSLADTIG---FRDGRWTIQDESSMLVAQAARPAAGMTVLDCCA 328
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S 401
APGGKT ++A + +G V A D++ + ++ + A+ + + + + D + S
Sbjct: 329 APGGKTTHLAELMGNEGRVIANDVHPHKQALIEQQAERLGL-TCVEAVTGDAAELGERYS 387
Query: 402 TVKCDKVLLDAPCSGLGVLSK 422
+ D VLLDAPCSGLGV+++
Sbjct: 388 SESFDLVLLDAPCSGLGVIAR 408
>gi|257868127|ref|ZP_05647780.1| sun protein [Enterococcus casseliflavus EC30]
gi|257874598|ref|ZP_05654251.1| sun protein [Enterococcus casseliflavus EC10]
gi|257802241|gb|EEV31113.1| sun protein [Enterococcus casseliflavus EC30]
gi|257808762|gb|EEV37584.1| sun protein [Enterococcus casseliflavus EC10]
Length = 452
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 121/411 (29%), Positives = 205/411 (49%), Gaps = 65/411 (15%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ L+RI+ GGA+++LL ++ G L+D+D RL+T++V
Sbjct: 13 RFVALEALLRIEKGGAYSNLLLRELMNQGR----------------LNDKDGRLLTELVY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI + LD+ + K ++P + +LR+ Y+++ LD +P +A++ E V +A
Sbjct: 57 GTISRQLLLDYYLDRFI---KNARKVDPWVKTLLRLSLYQMLYLDKVPAHAIIHEAVDIA 113
Query: 180 KVALRPGAGNLVNGILR--------KLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPV 231
K PG G VNG+LR L L+KD P+ +L AT S P+
Sbjct: 114 KAKGNPGTGKFVNGVLRTIQRQGVPDLALIKD----PMERL-----------ATEISLPL 158
Query: 232 WMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV---PHELS 288
W+ ++ K +G EE +L + +P+ + + +++A + +L + P ELS
Sbjct: 159 WLTKKLVKQIGIEETSELG-YALFEPNHASGRIDLQRISQAAAIERLQEEGIDARPSELS 217
Query: 289 LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKT 348
+ + G + + L KEGL +QDES+ LV V+ ++D CAAPGGKT
Sbjct: 218 PY---GVVADKGF--MAGSSLYKEGLLTIQDESSMLVAPVLQVARDHQVLDACAAPGGKT 272
Query: 349 LYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKC 405
++A+ LS G V A+DI+ +++++ + A+ V +V+ T D R A + +
Sbjct: 273 THIAAFLSAAEGGKVTALDIHAHKVKLIQQNAQRLGVEAVVETRVMDARETAQTFAPEQF 332
Query: 406 DKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
D +L+DAPCSGLG++ R ++Y KT Q L + + +L
Sbjct: 333 DSILVDAPCSGLGLM----------RRKPDIKYSKTEADFQRLPQIQREIL 373
>gi|229013049|ref|ZP_04170214.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
DSM 2048]
gi|228748303|gb|EEL98163.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
DSM 2048]
Length = 415
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 104/321 (32%), Positives = 169/321 (52%), Gaps = 24/321 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T++V GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 7 IDRKDIGLLTEMVYGTIQRRDTLDYYLQPFLR-----KKVEAWVRVLLRLSLYQMLYLDR 61
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P LE + R LA
Sbjct: 62 VPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPSLEEIENPVER-LAI 114
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHP+W+V+ W G E A K+ N P + R N K VT + V L +
Sbjct: 115 ATSHPMWLVQEWASEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAVALLADEGIEA 173
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ ++ I+++ G NV K+G ++QDES+ LV ++P G +++D CAAPG
Sbjct: 174 KRGELSEDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNKGDTVLDSCAAPG 231
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADNS 401
GKT ++A L G G V ++D++ ++R++ + AK + +V T+ D R FA+ S
Sbjct: 232 GKTTHIAERLDGTGKVMSLDLHAHKVRLIEQQAKRLGLENV-ETMALDARKVQEHFANES 290
Query: 402 TVKCDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 291 ---FDKILVDAPCSGSGVIRR 308
>gi|428219720|ref|YP_007104185.1| sun protein [Pseudanabaena sp. PCC 7367]
gi|427991502|gb|AFY71757.1| sun protein [Pseudanabaena sp. PCC 7367]
Length = 493
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 123/402 (30%), Positives = 179/402 (44%), Gaps = 63/402 (15%)
Query: 62 AVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGG 121
A+ A+R I GA+AD+ V++ L + DL D RL T++V G
Sbjct: 9 ALDALRF--IHKRGAYADM--------------AVDKILS-KNLDLGSSDRRLFTELVYG 51
Query: 122 TIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAK 180
+R +R L+ LI K + P LL L+IG Y+IV LD +P A V+ V LAK
Sbjct: 52 IVRRQRSLNALIDKFAR--KPATQQPPDLLMALQIGSYQIVYLDQVPDSAAVNTTVELAK 109
Query: 181 VALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGN--DRAQ------------------- 219
G LVN ILR + K+ +SL ++G DR
Sbjct: 110 QNKMSGLAGLVNAILRNISRAKEKDSLWATIVDGELIDRELNLNGVEQKEIKEEIAFDVS 169
Query: 220 -------------------ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFS 260
R+L ++S P W+V W G +L W N P
Sbjct: 170 ISKSELTDSQTNKPPQTELVRSLGIMHSFPDWIVELWLAQFGLAATNQLCEWFNRSPHID 229
Query: 261 LRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDE 320
LR N + + R L+ L + + ++ IR+ G + + G VQD
Sbjct: 230 LRVNKLQ-IDRPQLLQALADRGIAAQALDYIPNAIRLSQGAGKISNLPGFELGWWVVQDA 288
Query: 321 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKL 380
SA L ++DPQP ++I+D CAAPGGKT ++A + +G ++AID RL+ + +
Sbjct: 289 SAQLAGFLLDPQPQETIIDACAAPGGKTTHLAELMDNRGKIWAIDRAASRLKKVKQNCDR 348
Query: 381 HQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
QV +V +T DLR D D++LLD PCSGLG L +
Sbjct: 349 LQVTNV-QTRAIDLREIEDWQDY-GDRLLLDVPCSGLGTLHR 388
>gi|323141164|ref|ZP_08076065.1| ribosomal RNA small subunit methyltransferase B
[Phascolarctobacterium succinatutens YIT 12067]
gi|322414307|gb|EFY05125.1| ribosomal RNA small subunit methyltransferase B
[Phascolarctobacterium succinatutens YIT 12067]
Length = 453
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 103/325 (31%), Positives = 163/325 (50%), Gaps = 15/325 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
R L D D RL T++V GT++ LD + + + +L ILRI Y++
Sbjct: 39 LRGSRLSDLDRRLATELVYGTVKASGTLDWYLAQCV--SRPLDKVAGDILAILRISTYQL 96
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ + +P A V+E V+LA+ G+ VNG+LR L+ ++ + LP E D A
Sbjct: 97 LYMTRIPASAAVNEAVKLARSVSHEGSAKFVNGVLRGLLRKQEAGAFVLPDTEKQD---A 153
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
L+ Y HP W+V+RW G+ +L+ ++N+ LR N+ TR L+ L
Sbjct: 154 DYLSLQYYHPRWLVKRWLGPWGRGGTERLLAFDNTAAPVCLRVNTLV-TTRDKLLADLTE 212
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGL---CAVQDESAGLVVAVVDPQPGQSI 337
+ +H E+ +++ L L +QDES+ LV V+ PQPG +
Sbjct: 213 MGA----QVHASEWSPYGIVAEHLPSLHTLLAALPQHFYIQDESSMLVAPVLAPQPGMRV 268
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397
+D C+APGGK ++A + +G V A DI++ +L ++ E A + SV +T+ D
Sbjct: 269 LDMCSAPGGKATHVAQLMQDKGEVIACDIHEHKLELIAENAARLGMKSV-KTLQNDALQL 327
Query: 398 ADNSTVKCDKVLLDAPCSGLGVLSK 422
D+VL+DAPCSGLGVL +
Sbjct: 328 RSEWLGVFDRVLVDAPCSGLGVLRR 352
>gi|186684748|ref|YP_001867944.1| sun protein [Nostoc punctiforme PCC 73102]
gi|186467200|gb|ACC83001.1| sun protein [Nostoc punctiforme PCC 73102]
Length = 487
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 113/360 (31%), Positives = 174/360 (48%), Gaps = 57/360 (15%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQ-ILRIGFYEI-VK 163
+L DRD RLVT++V G++R +R LD LI K S +P L+ IL +GFY++ +
Sbjct: 33 NLPDRDRRLVTELVYGSVRRQRTLDTLIDQFA---KNKSHQQPQDLRTILHLGFYQLRYQ 89
Query: 164 LDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLV-----------------LLKDNNS 206
+P A V+ V+LAK G VNG+LR+ + ++ +S
Sbjct: 90 ERIPASAAVNTTVQLAKENGFSGLTGFVNGLLRQYLRKAGEQGGRGAGGQRSRGAEEKDS 149
Query: 207 L--------------------PLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEA 246
L PL +L N L ++S P W+++ W + LG E
Sbjct: 150 LLVPVPQPPVPSTQAPVLNFDPL-QLPENP---VERLGILHSFPDWIIQVWLEQLGLTET 205
Query: 247 IKLMVWNNSDPSFSLRAN----SRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQ 302
+L W N P+ LR N S + V A + L + ++P L + +R
Sbjct: 206 EQLCEWMNQSPTIDLRINPLCTSIEEVEAALQSVGLLVRRIPD-----LPQALRFMGNTG 260
Query: 303 NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVY 362
++ + KEG VQD SA LV ++DPQPG+ ++D CAAPGGKT ++A ++ G ++
Sbjct: 261 SIQKLPGFKEGWWTVQDASAQLVSHLLDPQPGEVVIDVCAAPGGKTTHIAELMADSGKIW 320
Query: 363 AIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
A D RLR L E ++ + S+ I+ ++ D+VLLDAPCSGLG + +
Sbjct: 321 ACDRTASRLRKLQENSQRLNLQSI--QIYTGDSRHSNQFQNTADRVLLDAPCSGLGTMHR 378
>gi|172057934|ref|YP_001814394.1| sun protein [Exiguobacterium sibiricum 255-15]
gi|171990455|gb|ACB61377.1| sun protein [Exiguobacterium sibiricum 255-15]
Length = 446
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 108/367 (29%), Positives = 188/367 (51%), Gaps = 39/367 (10%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R + L++I GGAF+ + V + L R + D+ L T++V
Sbjct: 4 RDAAVTTLLKIGQGGAFSTI--------------SVHQMLEKRA--ISKADVGLYTELVY 47
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GT+ LD+++ +K ++P + +LR+ Y++ LD +P +AV++E V +A
Sbjct: 48 GTLSRELTLDYILEPFLTKQK---KLDPFMRPLLRMSVYQLFYLDRIPDHAVINEAVEIA 104
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
K +P +VNG+LR ++ + +P DR ++ SHPVW+V+RW +
Sbjct: 105 KTRGKPHIAKVVNGVLRNVLRTGKPDFSAIPST--VDR-----ISIETSHPVWLVKRWLE 157
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKT 299
G+EE K+ NN ++R N R + + ++ L V + + + + + +
Sbjct: 158 LFGEEETWKMCRLNNEPAPVTVRVN-RTRTDQQEAIVLLEEQGVIAKPAHAAPDGLEIVS 216
Query: 300 GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQG 359
G +V Q LL+ G ++QDES+ LV A + QP ++D CAAPGGK +++A L+
Sbjct: 217 G--SVQQTDLLERGYLSLQDESSMLVAAALGAQPTDHVLDSCAAPGGKAMHIAEGLATGS 274
Query: 360 LVYAIDINKGRLRILNETAK---LHQVNS-VIRTIHADLRTFADNSTVKCDKVLLDAPCS 415
LV A+D++ ++++L + A LH V + + A R T D++L+DAPCS
Sbjct: 275 LV-ALDLHPHKVKLLEKQATRLGLHNVQAEALDARQAGTRF----ETASFDRILVDAPCS 329
Query: 416 GLGVLSK 422
GLGV+ +
Sbjct: 330 GLGVIRR 336
>gi|323489537|ref|ZP_08094764.1| ribosomal RNA small subunit methyltransferase B [Planococcus
donghaensis MPA1U2]
gi|323396668|gb|EGA89487.1| ribosomal RNA small subunit methyltransferase B [Planococcus
donghaensis MPA1U2]
Length = 450
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 169/313 (53%), Gaps = 22/313 (7%)
Query: 114 LVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVV 172
L+T+I GT++ + LD+ + + +E + +LR+ Y+IV LD +P +AVV
Sbjct: 48 LLTEITYGTLQHQMTLDYYL-----EPYLKGKIESWVKILLRLSLYQIVYLDRIPAHAVV 102
Query: 173 DENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQARALATIYSHP 230
E V +AK G ++VNG+LR + ++ N++ P ++ SHP
Sbjct: 103 HEAVEIAKRRGHGGVASVVNGVLRSVQRSGVRSFNTISDP---------YEKISIETSHP 153
Query: 231 VWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLH 290
WM+RRW + G E+ ++ + NN P ++R N+ + + M L ++ E S
Sbjct: 154 EWMIRRWAEQFGLEKTREMALENNKTPLQTVRVNTVRATVEEAIEM-LESEELEAEPSKM 212
Query: 291 LDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLY 350
+ E + V G + ++G +QDES+ L + +PG +++D CAAPGGKT +
Sbjct: 213 IPECLVVTNG--QPARTTTFEKGFITIQDESSMLPAYALQVEPGMTVLDMCAAPGGKTTH 270
Query: 351 MASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVL 409
+A ++ G +YA+D+++ ++++++E A+ ++VI T D + + K D++L
Sbjct: 271 IAEKMNNSGTLYALDLHQHKVKLIDENAE-RLGHTVIETTVGDGKQSVERFGEEKFDRIL 329
Query: 410 LDAPCSGLGVLSK 422
+DAPCSGLGV+ +
Sbjct: 330 VDAPCSGLGVIKR 342
>gi|421858977|ref|ZP_16291226.1| tRNA and rRNA cytosine-C5-methylase [Paenibacillus popilliae ATCC
14706]
gi|410831496|dbj|GAC41663.1| tRNA and rRNA cytosine-C5-methylase [Paenibacillus popilliae ATCC
14706]
Length = 454
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 106/345 (30%), Positives = 174/345 (50%), Gaps = 17/345 (4%)
Query: 80 LLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHD 139
L+ + +GS N +E + L+ D L T++V GTI+ +D ++
Sbjct: 4 LVRVEKEGSYSN----LELNRALKEAQLERADAALATELVYGTIQRLNTIDSVLARKV-- 57
Query: 140 EKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKL 198
++ + ++P + +LR+ Y++ LD +PP+A V+E V +AK + G VNG+LR +
Sbjct: 58 QRGLAKLKPWVRNLLRMTAYQLRYLDRVPPHAAVNEAVAIAKRRGQQAMGGFVNGVLRAV 117
Query: 199 VLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPS 258
+ + + L D A R +A +SHP W++ RW G+ E + NN P
Sbjct: 118 MREPELWTALLA-----DGAVNR-IAWEHSHPEWLIARWIAAYGEAETAAMCAANNRPPH 171
Query: 259 FSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQ 318
S R N +G TR L+ +L E S + I V G N+ + + G +VQ
Sbjct: 172 SSARVNRLRG-TREALLAELRADGYRAEASALSPDGI-VAAGAGNLAHSAWYRAGRLSVQ 229
Query: 319 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA 378
DES+ LVV + P+PG I+DCCAAPGGK+ ++A + +G V A D++ ++ ++ E A
Sbjct: 230 DESSMLVVEALRPEPGMRILDCCAAPGGKSTHIAERMGDRGEVTANDVHAYKVGLIEEQA 289
Query: 379 KLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSGLGVLSK 422
+ S + ++ D D VLLDAPC+G GV+ +
Sbjct: 290 TRLGLTS-LHVMNVDAAELGQALPPASFDAVLLDAPCTGFGVIRR 333
>gi|149182346|ref|ZP_01860824.1| sun protein [Bacillus sp. SG-1]
gi|148849965|gb|EDL64137.1| sun protein [Bacillus sp. SG-1]
Length = 445
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 97/314 (30%), Positives = 171/314 (54%), Gaps = 18/314 (5%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L+T++ GTI+ R LD + + + +E + Q+LR+ Y+++ LD +P
Sbjct: 43 DTGLLTELTYGTIQRRMTLDFYLAPFINKK-----IESWVRQLLRLSLYQMIYLDKIPDR 97
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
AV+ E V + K G +++NGILR + + + +E D + A+ T SH
Sbjct: 98 AVLFEAVEIGKRRGHKGIASMINGILRSI---QRKGVAAIESIE--DPVERLAIET--SH 150
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP-HELS 288
P W+V+RWT+ G E+ ++ N + P S R N+ + +T +L+ +L + + S
Sbjct: 151 PQWLVKRWTEQFGIEKTREMCETNITAPHQSARVNTLR-ITVDELIDRLTEEGLTVQKSS 209
Query: 289 LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKT 348
+ + I +K N+ + K+GL +QDES+ LV +D +++D CAAPGGKT
Sbjct: 210 IVPNAIISLKG---NLAKTAAFKDGLLTIQDESSMLVGHSLDVHEDFTVLDSCAAPGGKT 266
Query: 349 LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKV 408
++A + G+G V+A+D++K +++++NE A + ++ H R + D++
Sbjct: 267 THIAQLMEGKGKVFALDLHKHKIKLINENASRLGLGNIESKAHDSRRAGELFAAESFDRI 326
Query: 409 LLDAPCSGLGVLSK 422
L+DAPCSGLGVL +
Sbjct: 327 LVDAPCSGLGVLRR 340
>gi|83589751|ref|YP_429760.1| sun protein [Moorella thermoacetica ATCC 39073]
gi|83572665|gb|ABC19217.1| sun protein [Moorella thermoacetica ATCC 39073]
Length = 457
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 105/323 (32%), Positives = 161/323 (49%), Gaps = 13/323 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
++ LD R+ L T++ I+ LD + L + + P + +LR+G ++
Sbjct: 36 LKSAGLDGRERALATELAYSAIKAWGTLDWALGLFLR--QPLEKLPPWIRCVLRLGATQL 93
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ + +PP A + E V LAK G LVNG+LR L KD +LP P + + A
Sbjct: 94 LYVPRIPPRAAIYETVELAKKYGHRGTTGLVNGVLRHLDRQKD--ALPYPDWKTDP---A 148
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD-LVMQLN 279
LA Y HP W+V RW + G +E L +N P R N+ K TR D L +L
Sbjct: 149 GYLALRYYHPRWLVERWLEEFGYQETEYLCRADNEPPPTIARVNTLK--TRKDVLAARLQ 206
Query: 280 LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 339
+ + E + V+ GL + + +EGL VQDE + LV + P G ++D
Sbjct: 207 AEGATVRPARYAPEGLVVE-GLGALEASPSFQEGLFYVQDEGSQLVSHALHPDSGAWVID 265
Query: 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 399
AAPGGKT ++A ++ +G + A D+++GRL ++ + V V RT+ D R +
Sbjct: 266 ASAAPGGKTTHLAQLMADRGTILACDVHRGRLDLIAANCRRLGVTCV-RTVLVDARELGE 324
Query: 400 NSTVKCDKVLLDAPCSGLGVLSK 422
D +L+DAPCSGLGVL +
Sbjct: 325 RYPAAADYLLIDAPCSGLGVLRR 347
>gi|89098704|ref|ZP_01171586.1| sun protein [Bacillus sp. NRRL B-14911]
gi|89086666|gb|EAR65785.1| sun protein [Bacillus sp. NRRL B-14911]
Length = 448
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 108/357 (30%), Positives = 185/357 (51%), Gaps = 26/357 (7%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ D+ +D+ L+T++V GT++ + LD+ + + K +E + Q+LRI FY++
Sbjct: 32 IKKNDISSKDVGLLTELVYGTLQRKMTLDYQMEPFLKNPK---KLESWVRQLLRITFYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD +P A + E V +AK G +VNG+LR L + + L ++ D +
Sbjct: 89 IYLDKIPDRAAIYEAVEIAKRKGHKGISGMVNGVLRSL---QRQGARSLDSIK--DSVER 143
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
A+ T SHP+W+V+RW LG E A ++ N + P + R N K V+ + + L
Sbjct: 144 LAMET--SHPLWLVKRWVDQLGFERAKEMCELNLTAPMQTGRVNLMK-VSMDECMAMLEE 200
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
E S + E ++ K G N+ + KEG ++QDES+ L + + ++D
Sbjct: 201 EGYLVEASPVIPEAVKSKKG--NLAHSRAFKEGYLSIQDESSMLAAYALGAEKDNHVLDA 258
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
CAAPGGKT ++A L G V ++D+++ +++++ + A+ + S I T D RT ++
Sbjct: 259 CAAPGGKTTHIAEKLGNTGQVISLDLHEHKVKLIADNARRLGL-SNIETKAMDSRTVQEH 317
Query: 401 STV-KCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
D++LLDAPCSGLGV+ R ++Y K + HL + + LL
Sbjct: 318 FNAGSFDRILLDAPCSGLGVM----------RRKPDMKYTKKEEDIMHLQKVQLKLL 364
>gi|384181679|ref|YP_005567441.1| 16S rRNA methyltransferase B [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324327763|gb|ADY23023.1| 16S rRNA methyltransferase B [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 444
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 166/318 (52%), Gaps = 18/318 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P ++ R LAT
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI------QREGVPSVDEIKDPVER-LAT 143
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHPVW+V+ W G E A K+ N P + R N K +T + + L +
Sbjct: 144 ATSHPVWLVQEWASEYGLETAEKMCEVNMLPPVPTARVNVDK-ITVEEAITLLASEGIEA 202
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ D+ I+++ G NV K+G ++QDES+ LV ++P G ++D CAAPG
Sbjct: 203 KRGDLSDDAIQIERG--NVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVVLDSCAAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404
GKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 261 GKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLGNV-ETKALDARKVQEHFANET 319
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 320 FDKILVDAPCSGFGVIRR 337
>gi|206976730|ref|ZP_03237634.1| sun protein [Bacillus cereus H3081.97]
gi|206745040|gb|EDZ56443.1| sun protein [Bacillus cereus H3081.97]
Length = 444
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 101/318 (31%), Positives = 167/318 (52%), Gaps = 18/318 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+AT
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHP+W+V+ WT G E A K+ N P + R N K +T + L +
Sbjct: 146 --SHPIWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDK-ITVEGAITLLASEGIEA 202
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ D+ I+++ G NV K+G ++QDES+ LV ++P G ++D CAAPG
Sbjct: 203 KRGDLSDDAIQIEKG--NVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVVLDSCAAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404
GKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 261 GKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLGNV-ETKALDARKVQEHFANET 319
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 320 FDKILVDAPCSGFGVIRR 337
>gi|193214990|ref|YP_001996189.1| sun protein [Chloroherpeton thalassium ATCC 35110]
gi|193088467|gb|ACF13742.1| sun protein [Chloroherpeton thalassium ATCC 35110]
Length = 443
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 107/325 (32%), Positives = 159/325 (48%), Gaps = 22/325 (6%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLI-CLLCHDEKTFSSMEPLLLQILRIGFYE 160
F L+ D IV GT+R + +DH+I HD + M+ + ILRIG Y+
Sbjct: 30 FSITALEPVDRAFTMQIVYGTLREKMKIDHVIKQFYRHD---YDKMDIDVKNILRIGAYQ 86
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
++ L +P +A V+E+V LAK GNLVNG+LR + +N+L
Sbjct: 87 LLFLSKVPRWAAVNESVELAKKLKGQFLGNLVNGVLRNI-----SNNLESVDFSIQGGTF 141
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
A +A YSHP W++ RW G EA +M NN P + R N K Q
Sbjct: 142 ADQIALKYSHPRWLLERWISTYGFLEAQNIMEANNLIPRIAFRINRLKNAPEK---FQQK 198
Query: 280 LL--KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 337
LL V S+ L +F+ L G +VQ E+ L +++PQPGQ +
Sbjct: 199 LLAENVTFRKSI-LPDFVIPDRFFD---LEPFLSTGEVSVQSEAQALACRLLNPQPGQKV 254
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397
+D CAAPGGK+ Y+A ++ G + ++D+ +L ++ A ++ +I TI D F
Sbjct: 255 LDMCAAPGGKSTYLAEMMANAGQITSLDLYDNKLEDIDRLASALGID-IISTIKHDATRF 313
Query: 398 ADNSTVKCDKVLLDAPCSGLGVLSK 422
+ D +LLDAPC+G GVLS+
Sbjct: 314 SHEEGF--DAILLDAPCTGTGVLSR 336
>gi|42782957|ref|NP_980204.1| sun protein [Bacillus cereus ATCC 10987]
gi|42738884|gb|AAS42812.1| sun protein [Bacillus cereus ATCC 10987]
Length = 444
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 101/318 (31%), Positives = 167/318 (52%), Gaps = 18/318 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+AT
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHPVW+V+ W G E A K+ N P + R N K +T + + L +
Sbjct: 146 --SHPVWLVQEWASEYGLETAEKMCEVNMLPPVPTARVNVDK-ITVEEAITLLASEGIEA 202
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ D+ I+++ G NV K+G ++QDES+ LV ++P G ++D CAAPG
Sbjct: 203 KRGDLSDDAIQIEKG--NVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVVLDSCAAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404
GKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 261 GKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLGNV-ETKALDARKVQEHFANET 319
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 320 FDKILVDAPCSGFGVIRR 337
>gi|374296871|ref|YP_005047062.1| ribosomal RNA small subunit methyltransferase RsmB/transcription
antitermination factor NusB [Clostridium clariflavum DSM
19732]
gi|359826365|gb|AEV69138.1| ribosomal RNA small subunit methyltransferase RsmB/transcription
antitermination factor NusB [Clostridium clariflavum DSM
19732]
Length = 450
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/324 (29%), Positives = 171/324 (52%), Gaps = 25/324 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSS-----MEPLLLQILRIGFYEI 161
L + D +T++V GT++W+ +D++I + FSS + P +L ILR+G Y++
Sbjct: 37 LSNIDKAFITELVYGTLKWQLSIDYII-------EKFSSVKIKKLSPWILNILRLGVYQL 89
Query: 162 VKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ- 219
+ + +P A +E+V LAK + VN +LR + KD K+E DR +
Sbjct: 90 LYMTKIPESAACNESVNLAKRYGHSASSRYVNAVLRNITRSKD-------KIEYPDRNKD 142
Query: 220 -ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL 278
+ L+ YSHP WMV+ W G+ +L+ NN + ++R N+ K T +L QL
Sbjct: 143 LSAYLSIRYSHPEWMVKNWLNRFGESFTEELLKCNNENAPLTVRVNTLKTSTE-ELRDQL 201
Query: 279 NLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 338
+ + +++ + + ++ + ++GL VQDES+ +V V++P+P ++
Sbjct: 202 EKEGFEPQPAKYVENALIINKP-SSITKMRAFEQGLFQVQDESSMIVAQVLNPKPKDLVI 260
Query: 339 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398
D C+APGGK ++A + G V A D+++ +++++ E A + +I+ D +
Sbjct: 261 DVCSAPGGKATHIAELMQNTGQVIARDVHEHKIKLIEEAAIRLGI-GIIKAEVFDAQKED 319
Query: 399 DNSTVKCDKVLLDAPCSGLGVLSK 422
K D VL+DAPCSGLG++ +
Sbjct: 320 LKLINKADCVLVDAPCSGLGIIRR 343
>gi|217961285|ref|YP_002339853.1| sun protein [Bacillus cereus AH187]
gi|222097310|ref|YP_002531367.1| sun protein [Bacillus cereus Q1]
gi|375285788|ref|YP_005106227.1| sun protein [Bacillus cereus NC7401]
gi|423353567|ref|ZP_17331194.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
IS075]
gi|423374338|ref|ZP_17351676.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AND1407]
gi|423567240|ref|ZP_17543487.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MSX-A12]
gi|217064955|gb|ACJ79205.1| sun protein [Bacillus cereus AH187]
gi|221241368|gb|ACM14078.1| sun protein [Bacillus cereus Q1]
gi|358354315|dbj|BAL19487.1| sun protein [Bacillus cereus NC7401]
gi|401089380|gb|EJP97551.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
IS075]
gi|401094250|gb|EJQ02332.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AND1407]
gi|401214328|gb|EJR21058.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MSX-A12]
Length = 444
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 101/318 (31%), Positives = 167/318 (52%), Gaps = 18/318 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+AT
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHP+W+V+ WT G E A K+ N P + R N K +T + L +
Sbjct: 146 --SHPIWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDK-ITVEGAIALLASEGIEA 202
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ D+ I+++ G NV K+G ++QDES+ LV ++P G ++D CAAPG
Sbjct: 203 KRGDLSDDAIQIEKG--NVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVVLDSCAAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404
GKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 261 GKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLGNV-ETKALDARKVQEHFANET 319
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 320 FDKILVDAPCSGFGVIRR 337
>gi|345017809|ref|YP_004820162.1| sun protein [Thermoanaerobacter wiegelii Rt8.B1]
gi|344033152|gb|AEM78878.1| sun protein [Thermoanaerobacter wiegelii Rt8.B1]
Length = 444
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/322 (28%), Positives = 160/322 (49%), Gaps = 17/322 (5%)
Query: 103 RTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIV 162
R+++L + D ++V G I + LD ++ +M L +G Y+++
Sbjct: 30 RSQELKEIDRGFTKELVFGVIERKYTLDFILSFFVKKAPDLKTM-----IFLEMGLYQLL 84
Query: 163 KLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
+D +P YA ++E V +AK L N +N +LR K+ P +R +
Sbjct: 85 YMDKVPSYAAINETVNIAKKVLGIKRANFINAVLRNYEREKEKVIFP-----DKERDLKQ 139
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
L YS+P W+V R +E+A L+ N P R N+ K + DL L+
Sbjct: 140 YLKVTYSYPDWIVERLLNNYDEEKAEALLKSLNERPEICYRVNTLK-IDIEDLKRLLDSD 198
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
+ ++ +L+E + + ++N + L KEGL +QDE++ LV ++P+ G +++D C
Sbjct: 199 GIVYKKGYYLEEALYI--DIKNPERHQLYKEGLIYIQDEASMLVSKTLNPKEGDTVLDVC 256
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401
AAPGGKT ++A + G V A D++ RL ++ E K + +V + TF +
Sbjct: 257 AAPGGKTTHIAQLMKNSGEVIAFDLHPHRLELIKENCKRLGITNVKTEVFDS--TFVNEK 314
Query: 402 TV-KCDKVLLDAPCSGLGVLSK 422
+ K DKVL D PC+G+G++ K
Sbjct: 315 YLEKADKVLADVPCTGIGIIRK 336
>gi|430759003|ref|YP_007209724.1| ribosomal RNA small subunit methyltransferase B [Bacillus subtilis
subsp. subtilis str. BSP1]
gi|430023523|gb|AGA24129.1| Ribosomal RNA small subunit methyltransferase B [Bacillus subtilis
subsp. subtilis str. BSP1]
Length = 447
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/323 (28%), Positives = 174/323 (53%), Gaps = 16/323 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
++ +L D+D L+T++V GT++ + LD+++ + + ++P ++Q+LR+ Y++
Sbjct: 32 IKSNELSDQDRGLLTELVYGTLQNKIALDYMLKPFINKPQ---KVKPWVIQLLRLSLYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK+ G + VNG+LR + +P + +
Sbjct: 89 EYLEKIPDRAAIHEAVEIAKIRGHKGIASFVNGVLRSI------QREGVPSFDAIEDP-V 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R LAT SHP W+V+ W G E A K+ + P +LR N K RA+L+ Q+
Sbjct: 142 RRLATETSHPEWLVKEWADAYGFEAAEKICRIHLIPPKQTLRVNQMKA-DRAELLDQMAA 200
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ E ++ +++ G + + G ++QDES+ LV +DP+ ++++D
Sbjct: 201 EGIEVEKGDLAEDAVKLLKG--TIAGTHFFQNGEVSIQDESSMLVARALDPKSDETVLDA 258
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
CAAPGGK+ ++A + +G V ++D++K +++++ E A + ++I D R +
Sbjct: 259 CAAPGGKSAHIAELMKNKGSVTSLDLHKHKVKLIKEAADRLGL-TIIHAETMDARKAGET 317
Query: 401 -STVKCDKVLLDAPCSGLGVLSK 422
+ D++L+DAPCSG GV+ +
Sbjct: 318 FENEQFDRILVDAPCSGFGVIRR 340
>gi|237735904|ref|ZP_04566385.1| SUN protein [Mollicutes bacterium D7]
gi|374626103|ref|ZP_09698517.1| ribosomal RNA small subunit methyltransferase B [Coprobacillus sp.
8_2_54BFAA]
gi|229381649|gb|EEO31740.1| SUN protein [Coprobacillus sp. D7]
gi|373914629|gb|EHQ46444.1| ribosomal RNA small subunit methyltransferase B [Coprobacillus sp.
8_2_54BFAA]
Length = 417
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 110/337 (32%), Positives = 175/337 (51%), Gaps = 28/337 (8%)
Query: 91 NEMGYVERTLG-FRTKDLDDR-DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP 148
NE Y+ TL + K L R D L T IV GTI+ + YL++ + +K + +
Sbjct: 15 NEQSYLNITLNDYLEKSLLSRNDKDLATRIVYGTIQNKLYLEYQLAPYIQGKKIKNREKM 74
Query: 149 LLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSL 207
+LL + Y+++ LD +P YAV+DE VRLAK AG VN ILR N L
Sbjct: 75 ILL----MSLYQLIFLDKVPDYAVIDEAVRLAK-KRDNFAGKFVNAILR--------NFL 121
Query: 208 PLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK 267
K E +++ + + ++ SHP+W+V+ +K A K+ +N+ P+ + R N K
Sbjct: 122 RNGKCEIDEKDELKRISIETSHPLWIVKMLSKQYDLNIAKKICQHDNTPPTRAARVNILK 181
Query: 268 GVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVA 327
T+A L+ N E+ + + + G N+ K GL +QDES+ L+
Sbjct: 182 -TTKAQLLTDENF-----EVGNLSPDGLLYRAG--NIANTDYFKNGLVTIQDESSQLIAP 233
Query: 328 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVI 387
++DPQP ++D C APG KT ++A+ ++ QG + A D+ + +++++ K VN+V
Sbjct: 234 LLDPQPTDLVLDMCCAPGSKTTHLAAIMNNQGKIIAYDLFEHKIKLVEANLKRLGVNNV- 292
Query: 388 RTIHADLRTFADN--STVKCDKVLLDAPCSGLGVLSK 422
+H T S DK+LLDAPCSGLGV+ +
Sbjct: 293 -ELHVGDATLLKEKYSEESFDKILLDAPCSGLGVMKR 328
>gi|449094266|ref|YP_007426757.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus subtilis
XF-1]
gi|449028181|gb|AGE63420.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus subtilis
XF-1]
Length = 447
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/323 (28%), Positives = 174/323 (53%), Gaps = 16/323 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
++ +L D+D L+T++V GT++ + LD+++ + + ++P ++Q+LR+ Y++
Sbjct: 32 IKSNELSDQDRGLLTELVYGTLQNKIALDYMLKPFINKPQ---KVKPWVIQLLRLSLYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK+ G + VNG+LR + +P + +
Sbjct: 89 EYLEKIPDRAAIHEAVEIAKIRGHKGIASFVNGVLRSI------QREGVPSFDAIEDP-V 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R LAT SHP W+V+ W G E A K+ + P +LR N K RA+L+ Q+
Sbjct: 142 RRLATETSHPEWLVKEWVDAYGFEAAEKICRIHLIPPKQTLRVNQMKA-DRAELLDQMAA 200
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ E ++ +++ G + + G ++QDES+ LV +DP+ ++++D
Sbjct: 201 EGIEVEKGDLAEDAVKLLKG--TIAGTHFFQNGEVSIQDESSMLVARALDPKSDETVLDA 258
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
CAAPGGK+ ++A + +G V ++D++K +++++ E A + ++I D R +
Sbjct: 259 CAAPGGKSAHIAELMKNKGSVTSLDLHKHKVKLIKEAADRLGL-TIIHAETMDARKAGET 317
Query: 401 -STVKCDKVLLDAPCSGLGVLSK 422
+ D++L+DAPCSG GV+ +
Sbjct: 318 FENEQFDRILVDAPCSGFGVIRR 340
>gi|402556013|ref|YP_006597284.1| 16S rRNA methyltransferase B [Bacillus cereus FRI-35]
gi|401797223|gb|AFQ11082.1| 16S rRNA methyltransferase B [Bacillus cereus FRI-35]
Length = 444
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 101/318 (31%), Positives = 167/318 (52%), Gaps = 18/318 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+AT
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHPVW+V+ W G E A K+ N P + R N K +T + + L +
Sbjct: 146 --SHPVWLVQEWASEYGLETAEKMCEVNMLPPVPTARVNVDK-ITVEEAITLLASEGIEA 202
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ D+ I+++ G NV K+G ++QDES+ LV ++P G ++D CAAPG
Sbjct: 203 KRGDLSDDAIQIERG--NVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVVLDSCAAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404
GKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 261 GKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLGNV-ETKALDARKVQEHFANET 319
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 320 FDKILVDAPCSGFGVIRR 337
>gi|423395834|ref|ZP_17373035.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG2X1-1]
gi|401653576|gb|EJS71120.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG2X1-1]
Length = 444
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 105/321 (32%), Positives = 166/321 (51%), Gaps = 24/321 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDVGLLTEIVYGTIQRRDTLDYYLQPFLR-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P L+ R LA
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPSLDEIKDPVER-LAI 143
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHPVW+V+ WT G E A K+ N P + R N K VT + + L +
Sbjct: 144 AMSHPVWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAIELLANEGIEA 202
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ D+ I+++ G NV K+G ++QDES+ LV ++P G ++D CAAPG
Sbjct: 203 KRGDLSDDAIQIEKG--NVAHTEAFKKGFLSIQDESSMLVARALEPDEGDVVLDSCAAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADNS 401
GKT ++A L G G V ++D++ ++R++ + A + +V T D R FA+ S
Sbjct: 261 GKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQADRLGLENV-ETKALDARKVQEHFANES 319
Query: 402 TVKCDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 320 ---FDKILVDAPCSGFGVIRR 337
>gi|423406710|ref|ZP_17383859.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG2X1-3]
gi|401660000|gb|EJS77483.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG2X1-3]
Length = 444
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 105/321 (32%), Positives = 166/321 (51%), Gaps = 24/321 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDVGLLTEIVYGTIQRRDTLDYYLQPFLR-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P L+ R LA
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPSLDEIKDPVER-LAI 143
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHPVW+V+ WT G E A K+ N P + R N K VT + + L +
Sbjct: 144 AMSHPVWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAIELLANEGIEA 202
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ D+ I+++ G NV K+G ++QDES+ LV ++P G ++D CAAPG
Sbjct: 203 KRGDLSDDAIQIEKG--NVAHTEAFKKGFLSIQDESSMLVARALEPDEGDVVLDSCAAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADNS 401
GKT ++A L G G V ++D++ ++R++ + A + +V T D R FA+ S
Sbjct: 261 GKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQADRLGLENV-ETKALDARKVQEHFANES 319
Query: 402 TVKCDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 320 ---FDKILVDAPCSGFGVIRR 337
>gi|326389542|ref|ZP_08211109.1| sun protein [Thermoanaerobacter ethanolicus JW 200]
gi|392940847|ref|ZP_10306491.1| ribosomal RNA small subunit methyltransferase RsmB
[Thermoanaerobacter siderophilus SR4]
gi|325994547|gb|EGD52972.1| sun protein [Thermoanaerobacter ethanolicus JW 200]
gi|392292597|gb|EIW01041.1| ribosomal RNA small subunit methyltransferase RsmB
[Thermoanaerobacter siderophilus SR4]
Length = 444
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/322 (28%), Positives = 160/322 (49%), Gaps = 17/322 (5%)
Query: 103 RTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIV 162
R+++L + D ++V G I + LD ++ +M L +G Y+++
Sbjct: 30 RSQELKEIDRGFTKELVFGVIERKYTLDFILSFFVKKAPDLKTM-----IFLEMGLYQLL 84
Query: 163 KLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
+D +P YA ++E V +AK L N +N +LR K+ P +R +
Sbjct: 85 YMDKVPSYAAINETVNIAKKVLGIKRANFINAVLRNYEREKEKVIFP-----DKERDLKQ 139
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
L YS+P W+V R +E+A L+ N P R N+ K + DL L+
Sbjct: 140 YLKVTYSYPDWIVERLLNNYDEEKAEALLKSLNERPEICYRVNTLK-IDIEDLKRLLDSD 198
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
+ ++ +L+E + + ++N + L KEGL +QDE++ LV ++P+ G +++D C
Sbjct: 199 GIVYKKGYYLEEALYI--DIKNPERHQLYKEGLIYIQDEASMLVSKTLNPKEGDTVLDVC 256
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401
AAPGGKT ++A + G V A D++ RL ++ E K + +V + TF +
Sbjct: 257 AAPGGKTTHIAQLMKNSGEVIAFDLHPHRLELIKENCKRLGITNVKTEVFDS--TFVNEK 314
Query: 402 TV-KCDKVLLDAPCSGLGVLSK 422
+ K DKVL D PC+G+G++ K
Sbjct: 315 YLEKADKVLADVPCTGIGIIRK 336
>gi|398304097|ref|ZP_10507683.1| 16S rRNA methyltransferase B [Bacillus vallismortis DV1-F-3]
Length = 447
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/323 (28%), Positives = 173/323 (53%), Gaps = 16/323 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
++ +L D+D L+T++V GT++ + LD+++ + + ++P ++Q+LR+ Y++
Sbjct: 32 MKSNELSDQDRGLLTELVYGTLQNKIALDYMLKPFINKPQ---KVKPWVIQLLRLSLYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK+ G + VNG+LR + +P + +
Sbjct: 89 EYLEKIPDRAAIHEAVEIAKIRGHKGIASFVNGVLRSI------QREGVPSFDAIEDP-V 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R LAT SHP W+V+ W + A K+ + P +LR N K RA+L+ Q+
Sbjct: 142 RRLATETSHPEWLVKEWVDAYEFDAAEKICRIHLIPPKQTLRVNQMKA-DRAELLDQMAA 200
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ E D+ +++ G + G ++QDES+ LV +DP+PG++++D
Sbjct: 201 DGIEVEKGDLADDAVKLLKG--TIAGTHFFLNGEVSIQDESSMLVARALDPKPGETVLDA 258
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
CAAPGGK+ ++ + +G + ++D++K +++++ E A + ++I D R +
Sbjct: 259 CAAPGGKSAHIGELMENKGSISSLDLHKHKVKLIKEAADRLGL-TIIDAQEMDARKAGET 317
Query: 401 -STVKCDKVLLDAPCSGLGVLSK 422
+ D+VL+DAPCSG GV+ +
Sbjct: 318 FENEQFDRVLVDAPCSGFGVIRR 340
>gi|167040389|ref|YP_001663374.1| sun protein [Thermoanaerobacter sp. X514]
gi|256752273|ref|ZP_05493136.1| sun protein [Thermoanaerobacter ethanolicus CCSD1]
gi|300914473|ref|ZP_07131789.1| sun protein [Thermoanaerobacter sp. X561]
gi|307724291|ref|YP_003904042.1| sun protein [Thermoanaerobacter sp. X513]
gi|166854629|gb|ABY93038.1| sun protein [Thermoanaerobacter sp. X514]
gi|256748841|gb|EEU61882.1| sun protein [Thermoanaerobacter ethanolicus CCSD1]
gi|300889408|gb|EFK84554.1| sun protein [Thermoanaerobacter sp. X561]
gi|307581352|gb|ADN54751.1| sun protein [Thermoanaerobacter sp. X513]
Length = 444
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/322 (28%), Positives = 162/322 (50%), Gaps = 17/322 (5%)
Query: 103 RTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIV 162
+ ++L + D ++V G I + LD ++ + +M L +G Y+++
Sbjct: 30 KGQELKEIDRGFTKELVFGVIERKYTLDFILSFFVNKAPDLKTM-----IFLEMGLYQLL 84
Query: 163 KLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
+D +P YA ++E V +AK L N +N +LR K+ P +R +
Sbjct: 85 YMDKVPSYAAINETVNIAKKVLGIKRANFINAVLRNYDREKERVIFP-----DKERDLKQ 139
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
L YS+P W+V R +E+A L+ N P R N+ K + DL L+
Sbjct: 140 YLKVTYSYPDWIVERLLNNYDEEKAEALLKSLNERPEICYRVNTLK-IDIEDLKRLLDSD 198
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
+ ++ +L+E + + ++N L KEG +QDE++ LV +++P+ G++++D C
Sbjct: 199 GIAYKKGYYLEEALYI--DIKNPESHQLYKEGFIYIQDEASMLVSKILNPKEGETVIDVC 256
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401
AAPGGKT ++A + G V A D++ RL ++ E K + +V +T D TF +
Sbjct: 257 AAPGGKTTHIAQLMKNNGKVVAFDLHPHRLELIKENCKRLGITNV-KTEAFD-STFVNKK 314
Query: 402 TV-KCDKVLLDAPCSGLGVLSK 422
+ K DKVL D PC+G+G++ K
Sbjct: 315 YLEKADKVLADVPCTGIGIIRK 336
>gi|407477614|ref|YP_006791491.1| ribosomal RNA small subunit methyltransferase B [Exiguobacterium
antarcticum B7]
gi|407061693|gb|AFS70883.1| Ribosomal RNA small subunit methyltransferase B [Exiguobacterium
antarcticum B7]
Length = 442
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 101/363 (27%), Positives = 185/363 (50%), Gaps = 31/363 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R + L++I GGAF+ + V + L R + D+ L T++V
Sbjct: 4 RDAAVTTLLKIGQGGAFSTI--------------SVHQMLEKRA--IAKADVGLYTELVY 47
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GT+ LD+++ +K ++P + +LR+ Y++ LD +P +AV++E V +A
Sbjct: 48 GTLSRELTLDYILEPFLASQK---KLDPFMRPLLRMSVYQLFYLDRIPDHAVINEAVEIA 104
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
K +P +VNG+LR VL K + + ++ SHP W+V RW +
Sbjct: 105 KTRGKPHIAKVVNGVLRN-VLRKGKPDF------STISSTVQRISIETSHPAWLVERWIE 157
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKT 299
G++E ++ NN ++R N R+ R +++ L V +L+ + + + +
Sbjct: 158 LFGEDETWQMCRLNNEPAPVTVRVNQRRA-DRQEMIQLLEEQGVIAKLAHAAPDGLEIIS 216
Query: 300 GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQG 359
G +V Q LL+ G ++QDES+ LV + V Q ++D CAAPGGK +++A L+ G
Sbjct: 217 G--SVQQTDLLERGYLSLQDESSMLVASAVGAQVSDRVLDSCAAPGGKAMHIAEGLT-TG 273
Query: 360 LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGV 419
++A+D++ ++++L + AK + +V + + + D++L+DAPCSGLGV
Sbjct: 274 SLFALDLHPHKVKLLEKQAKRLGLETVQTDVLDARQAGSRFDPASFDRILVDAPCSGLGV 333
Query: 420 LSK 422
+ +
Sbjct: 334 IRR 336
>gi|187778898|ref|ZP_02995371.1| hypothetical protein CLOSPO_02493 [Clostridium sporogenes ATCC
15579]
gi|187772523|gb|EDU36325.1| ribosomal RNA small subunit methyltransferase B [Clostridium
sporogenes ATCC 15579]
Length = 442
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 107/364 (29%), Positives = 181/364 (49%), Gaps = 31/364 (8%)
Query: 61 RAVSAVRLMRIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIV 119
R V+ L + + GA++++ LNKK S +L D D L+T+IV
Sbjct: 5 REVALDVLKAVLYEGAYSNIVLNKKLNKS-----------------NLKDNDKALITEIV 47
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRL 178
GT++++ LD I + + + +M+ + ILRI Y+I LD +P +A V+E V +
Sbjct: 48 YGTLKYKETLD--IIIQSYLKNPIKTMDKNIANILRITIYQIRYLDKIPSFAAVNEAVEM 105
Query: 179 AKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWT 238
+K + LVNG+LR + N +DR + IYS+P W+++ +
Sbjct: 106 SK-KISIKYSKLVNGVLRNYIRTYKNKKF------YDDRNNLEKFSFIYSYPKWLIKMFI 158
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVK 298
G E A K++ N P+ ++R N+ K + + +L+ E E I++
Sbjct: 159 SQYGIEIAEKILKGLNERPNITVRVNNLK-IDYDEAFEKLDEYGYNIEEGYICPEAIQII 217
Query: 299 TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 358
G +N+ + L EG VQDESA LV ++ ++D C+APGGKT +++ ++ +
Sbjct: 218 KG-KNIEKNPLFIEGDITVQDESAMLVAPSMELTEESIVLDLCSAPGGKTTHISEIINNK 276
Query: 359 GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLG 418
VYA D+++ +L ++ E AK + +V T D F +VL+D PCSGLG
Sbjct: 277 SKVYAYDVHQNKLSLIEENAKRLGIKNV-ETDVCDAAIFNKELKEIAHRVLMDVPCSGLG 335
Query: 419 VLSK 422
++ K
Sbjct: 336 IIRK 339
>gi|392412440|ref|YP_006449047.1| ribosomal RNA small subunit methyltransferase RsmB [Desulfomonile
tiedjei DSM 6799]
gi|390625576|gb|AFM26783.1| ribosomal RNA small subunit methyltransferase RsmB [Desulfomonile
tiedjei DSM 6799]
Length = 448
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 109/333 (32%), Positives = 164/333 (49%), Gaps = 46/333 (13%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLI--CLLCHDEKTFSSMEPLLLQILRIGFYEIV 162
+ L +D L T++V G +RWR LD +I C++ + + M+P + +ILR Y+I
Sbjct: 36 QSLSAKDRNLATELVYGVVRWRDRLDSIIRRCVI----RPGTRMDPDVREILRTALYQIF 91
Query: 163 KLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
L +P +A VD+ V A + AG VN +LR+ + ++ P K R
Sbjct: 92 FLQRIPEHAAVDQAVMYASQRSKKHAG-FVNAVLRRALRDRETADPPPEK-------DPR 143
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGV--TRADLVMQLN 279
LA YSHP W+VRRW G + ++ NNS S LR N+ K T + + +
Sbjct: 144 RLAVYYSHPEWLVRRWLHRFGYRKTKHILQHNNSKASLELRLNTLKATPDTVSQITEESE 203
Query: 280 LLKVPHELSLHLDEFIRV--KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 337
L +P +RV +G I+ L EG VQ ++ ++ ++ PQP I
Sbjct: 204 LQAIPG-----FPNALRVMRSSGKVETIKGFL--EGSLVVQALASQMIAPLLKPQPDMRI 256
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK------LHQVNSVIRTIH 391
+D CAAPGGKT ++A+ + + A+DI++ R LNETA +H V V+
Sbjct: 257 LDACAAPGGKTSHLAALVQDNARIVALDISQQR---LNETAANLQRLGVHSVEFVVGDA- 312
Query: 392 ADLRTFADNSTVK----CDKVLLDAPCSGLGVL 420
AD VK D++L+DAPCS LGVL
Sbjct: 313 ------ADPQMVKELGTFDRILVDAPCSNLGVL 339
>gi|403383389|ref|ZP_10925446.1| ribosomal RNA small subunit methyltransferase B [Kurthia sp. JC30]
Length = 452
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 104/321 (32%), Positives = 170/321 (52%), Gaps = 23/321 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D L+T++ GT++++ LD+ + + ++ + +LR+ Y+I LD
Sbjct: 45 IDAKDRGLLTELTYGTLQYKLTLDYYL-----EPYVRGKLDTWVRWLLRLSLYQIAYLDK 99
Query: 166 MPPYAVVDENVRLAKVALRPGA-GNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQARA 222
+P +A V+E V +AK R G VNGILR ++ L++ + D AQ A
Sbjct: 100 IPDHAAVNEAVEIAKHRARHGGIAATVNGILRSILRNGLRETTDI-------KDTAQRIA 152
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
+ T SHP W+VRR+ G E +++ NN P ++R N+ K TR L L K
Sbjct: 153 IET--SHPEWLVRRYIDGFGVEVTEDMLIENNFPPLQTVRVNATKADTRGGL-EALWEEK 209
Query: 283 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
S ++ E + V G QA +G+ +QDES+ L +D QPG + D CA
Sbjct: 210 YAVRRSENVPECLHVIEGQPARSQA--FADGIITIQDESSMLPAYALDVQPGMRVYDMCA 267
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S 401
APGGKT ++A ++ +G + A D++K +++++ E A + S+I+T D R D
Sbjct: 268 APGGKTTHIAEKMNNEGELIATDLHKHKIKLIQENADRLGL-SIIKTSVLDGRKATDEFE 326
Query: 402 TVKCDKVLLDAPCSGLGVLSK 422
D++L+DAPCSGLGV+ +
Sbjct: 327 AASFDRILVDAPCSGLGVIRR 347
>gi|365830316|ref|ZP_09371898.1| ribosomal RNA small subunit methyltransferase B [Coprobacillus sp.
3_3_56FAA]
gi|365263497|gb|EHM93327.1| ribosomal RNA small subunit methyltransferase B [Coprobacillus sp.
3_3_56FAA]
Length = 417
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 111/337 (32%), Positives = 175/337 (51%), Gaps = 28/337 (8%)
Query: 91 NEMGYVERTLG-FRTKDLDDR-DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP 148
NE Y+ TL + K L R D L T IV GTI+ + YL++ + +K + +
Sbjct: 15 NEQSYLNITLNDYLEKSLLSRNDKDLATRIVYGTIQNKLYLEYQLAPYIQGKKIKNREKM 74
Query: 149 LLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSL 207
+LL + Y+++ LD +P YAV+DE VRLAK AG VN ILR N L
Sbjct: 75 ILL----MSLYQLIFLDKVPDYAVIDEAVRLAK-KRDNFAGKFVNAILR--------NFL 121
Query: 208 PLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK 267
K E +++ + + ++ SHP+W+V+ +K A K+ +N+ P+ + R N K
Sbjct: 122 RNGKCEIDEKDELKRISIETSHPLWIVKMLSKQYDLNIAKKICQHDNTPPTRAARVNILK 181
Query: 268 GVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVA 327
T+A L+ N +L D + + G N+ K GL +QDES+ L+
Sbjct: 182 -TTKAQLLTDENF----EAGNLSPDGLL-YRAG--NIANTDYFKNGLVTIQDESSQLIAP 233
Query: 328 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVI 387
++DPQP ++D C APG KT ++A+ ++ QG + A D+ + +++++ K VN+V
Sbjct: 234 LLDPQPTDLVLDMCCAPGSKTTHLAAIMNNQGKIIAYDLFEHKIKLVEANLKRLGVNNV- 292
Query: 388 RTIHADLRTFADN--STVKCDKVLLDAPCSGLGVLSK 422
+H T S DK+LLDAPCSGLGV+ +
Sbjct: 293 -ELHVGDATLLKEKYSEESFDKILLDAPCSGLGVMKR 328
>gi|281412717|ref|YP_003346796.1| sun protein [Thermotoga naphthophila RKU-10]
gi|281373820|gb|ADA67382.1| sun protein [Thermotoga naphthophila RKU-10]
Length = 431
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 161/313 (51%), Gaps = 26/313 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LDD+D R ++V G +R LD I L + + P + LR+G Y+++ ++
Sbjct: 34 LDDKDRRFFKELVWGVVRKEELLDWYINQLLKKK----DIPPAVRVALRMGAYQLLFMNS 89
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P YA V E V+L K LVN +LR+L ++P PK L
Sbjct: 90 VPDYAAVSETVKLVK---SENFKKLVNAVLRRL------RTVPEPK----------ELHL 130
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
IYSHP W+V W +L +E +++M WN LR NS T+ +++ L
Sbjct: 131 IYSHPEWIVNYWRSFLPEEAVLRIMKWNQEPLPVMLRVNSL-ATTKEEVIKILAEEGTEA 189
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
H + V+ ++ + ++K+GL +VQ ES+ LV ++ +PG ++D CAAPG
Sbjct: 190 VPGKHAPFSLVVRKLGISMNDSRVIKDGLASVQGESSQLVPFFMELKPGLRVLDTCAAPG 249
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405
GKT +A + QG + A+DI++ + +++ + AK +++S I T AD+ +
Sbjct: 250 GKTTAIAELMKDQGKILAVDISREKTQLVEKHAKRLKLSS-IETKIADVERLTEYVQDTF 308
Query: 406 DKVLLDAPCSGLG 418
D++L+DAPC+ LG
Sbjct: 309 DRILVDAPCTSLG 321
>gi|167757026|ref|ZP_02429153.1| hypothetical protein CLORAM_02575 [Clostridium ramosum DSM 1402]
gi|167703201|gb|EDS17780.1| ribosomal RNA small subunit methyltransferase B [Clostridium
ramosum DSM 1402]
Length = 417
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 111/337 (32%), Positives = 175/337 (51%), Gaps = 28/337 (8%)
Query: 91 NEMGYVERTLG-FRTKDLDDR-DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP 148
NE Y+ TL + K L R D L T IV GTI+ + YL++ + +K + +
Sbjct: 15 NEQSYLNITLNDYLEKSLLSRNDKDLATRIVYGTIQNKLYLEYQLAPYIQGKKIKNREKM 74
Query: 149 LLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSL 207
+LL + Y+++ LD +P YAV+DE VRLAK AG VN ILR N L
Sbjct: 75 ILL----MSLYQLIFLDKVPDYAVIDEAVRLAK-KRDNFAGKFVNAILR--------NFL 121
Query: 208 PLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK 267
K E +++ + + ++ SHP+W+V+ +K A K+ +N+ P+ + R N K
Sbjct: 122 RNGKCEIDEKDELKRISIETSHPLWIVKMLSKQYDLNIAKKICQHDNTPPTRAARVNILK 181
Query: 268 GVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVA 327
T+A L+ N +L D + + G N+ K GL +QDES+ L+
Sbjct: 182 -TTKAQLLTDENF----EAGNLSPDGLL-YRAG--NIANTDYFKNGLVTIQDESSQLIAP 233
Query: 328 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVI 387
++DPQP ++D C APG KT ++A+ ++ QG + A D+ + +++++ K VN+V
Sbjct: 234 LLDPQPTDLVLDMCCAPGSKTTHLAAIMNNQGKIIAYDLFEHKIKLVEANLKRLGVNNV- 292
Query: 388 RTIHADLRTFADN--STVKCDKVLLDAPCSGLGVLSK 422
+H T S DK+LLDAPCSGLGV+ +
Sbjct: 293 -ELHVGDATLLKEKYSEESFDKILLDAPCSGLGVMKR 328
>gi|428773859|ref|YP_007165647.1| sun protein [Cyanobacterium stanieri PCC 7202]
gi|428688138|gb|AFZ47998.1| sun protein [Cyanobacterium stanieri PCC 7202]
Length = 464
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 112/327 (34%), Positives = 165/327 (50%), Gaps = 31/327 (9%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQI-LRIGFYEIVKLD-MPP 168
D LV+++V G +R +R LD L+ L + +S +PL L+I L +G Y++ LD +PP
Sbjct: 43 DKGLVSELVYGIVRRKRTLDSLVNQLGTKK---ASRQPLPLRIILHLGLYQLRYLDKIPP 99
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLV---LLKDNNSLP---LPKLEGNDRAQARA 222
A V+ +V LAK +VNGILR + ++D LP +PKL
Sbjct: 100 SAAVNTSVELAKANGLGKLSGVVNGILRSYIRKSAIEDPLVLPSELVPKL---------- 149
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
YS P W+V + K L +E KL+ W N P LR N+ K T ++ L+
Sbjct: 150 -GVKYSFPDWIVEIFLKQLNVKETKKLLQWYNESPCLDLRVNTLKTSTE-EVKNFLDADG 207
Query: 283 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
V E HL + +R+ + NV +GL +VQD SA LV + P G+++ D CA
Sbjct: 208 VSCEFVPHLPQALRLSSA-GNVRNLKGFADGLFSVQDSSAQLVGHFLAPVRGETVFDACA 266
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV-IRTIHADLRTF---- 397
APGGKT ++A + +G + A D RL + E + + SV +R + F
Sbjct: 267 APGGKTTHIAELMGDEGTIIACDNISSRLEKITENVQRLGLKSVQVREGDSSEWEFCEEK 326
Query: 398 --ADNSTVKCDKVLLDAPCSGLGVLSK 422
D+ CD++L+DAPCSGLG L K
Sbjct: 327 DKCDHEMALCDRILIDAPCSGLGTLHK 353
>gi|123965723|ref|YP_001010804.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9515]
gi|123200089|gb|ABM71697.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9515]
Length = 437
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/331 (29%), Positives = 171/331 (51%), Gaps = 23/331 (6%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLI---CLLCHDEKTFSSMEPLLLQILRIGF 158
+ + + D+ +T++ G IR+R++LD I L H ++ P L +L IG
Sbjct: 32 LKNYEFNSLDIAFITELSFGCIRYRKFLDTWIDHISKLSHQKQP-----PKLRWLLHIGL 86
Query: 159 YEIVKLDMPPY-AVVDENVRLAKVALRPGAGNLVNGILRKLV--LLKDNNSLPLPKLEGN 215
Y+++K+D P+ A + V +AK G VN ILR V + +DN PK+ +
Sbjct: 87 YQLLKMDKIPFPAAISSTVEVAKRTDLKGLAGTVNAILRNTVRNIERDN----CPKISTD 142
Query: 216 DRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLV 275
+ + L+ + S P+W+V ++G +EA + N P+ LR NS K ++
Sbjct: 143 EMEK---LSCLESLPLWLVTEIVNWVGIKEAKNIFKAFNKKPTIDLRINSLK-TNFNKIL 198
Query: 276 MQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
+LN + E L+ + + + +++ K+GL VQD S+ V +++P+ G+
Sbjct: 199 KELNECNIQAEPINQLNNGVALNSNPRSIKNLPGYKDGLWVVQDRSSQWVAPLLNPKKGE 258
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
I+D C+APG KT ++A+ ++ + A+D ++ RL+IL + + SV +T+ AD
Sbjct: 259 KILDACSAPGSKTTHLAALVNDDAEILAVDRSEKRLKILQSNLERLNIKSV-KTLEADAT 317
Query: 396 TFAD---NSTVKCDKVLLDAPCSGLGVLSKT 423
T D N DK+L+DAPCSG+G ++
Sbjct: 318 TLIDIKPNLASYFDKILIDAPCSGIGTFARN 348
>gi|258515525|ref|YP_003191747.1| sun protein [Desulfotomaculum acetoxidans DSM 771]
gi|257779230|gb|ACV63124.1| sun protein [Desulfotomaculum acetoxidans DSM 771]
Length = 452
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 99/336 (29%), Positives = 167/336 (49%), Gaps = 13/336 (3%)
Query: 90 DNEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
D E Y L +D + D T++V GT+R +D ++ + SS
Sbjct: 18 DQEGAYANIALNQVLEQRDFNKLDRAFTTELVYGTLRALNTVDWVLAQFL--KHPLSSQT 75
Query: 148 PLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
+ ILR+G Y+++ + +P A +E +L+ G VNG+LR + + + +
Sbjct: 76 AWIRNILRLGTYQLLFMHRVPASAACNEAAKLSHKYGHKGQVKFVNGVLRNIA--RQHEN 133
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
+ P E + + ++ YSHP+WMV RW G+E+ I++ NN+ FS+R N+
Sbjct: 134 IEYPDCEKDPVSH---ISLRYSHPIWMVERWLNQFGKEKTIRICQSNNTPARFSIRTNTL 190
Query: 267 KGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVV 326
+ + R +L L + + + E + V+ G ++ + GL VQDES+ L
Sbjct: 191 Q-INRDNLAELLKQQGMIVDKTGFAPEGLNVE-GFTSLRNFPAFRNGLFQVQDESSILAG 248
Query: 327 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV 386
V P ++D CAAPGGKT ++A + +G + A DI +L ++ + + + V
Sbjct: 249 HAVKPAVNCRVIDACAAPGGKTTHLAQLMENKGEIIAADIYPHKLDLIEDNCQRLGIKCV 308
Query: 387 IRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
+ I+ D RT ++ T D VL+DAPCSGLGVL +
Sbjct: 309 -KIINLDSRTLHNSYTGWADYVLVDAPCSGLGVLRR 343
>gi|423582075|ref|ZP_17558186.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD014]
gi|401212954|gb|EJR19695.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD014]
Length = 444
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 101/318 (31%), Positives = 168/318 (52%), Gaps = 18/318 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+ T
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAITT 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
S+PVW+V+ WT G E A K+ N P + R N K VT + + L +
Sbjct: 146 --SYPVWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAIELLASEGIEA 202
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ D+ I+++ G NV K+G ++QDES+ LV ++P G +++D CAAPG
Sbjct: 203 KRGDLSDDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNTGDAVLDSCAAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404
GKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 261 GKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFANET 319
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 320 FDKILVDAPCSGFGVIRR 337
>gi|404418446|ref|ZP_11000213.1| 16S rRNA methyltransferase B [Staphylococcus arlettae CVD059]
gi|403489039|gb|EJY94617.1| 16S rRNA methyltransferase B [Staphylococcus arlettae CVD059]
Length = 435
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 168/311 (54%), Gaps = 20/311 (6%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L T+IV GT++ + LD+++ + ++ + +L + Y+ V L+ +P +
Sbjct: 40 DKNLYTEIVYGTLKRKYTLDYMLKPFVQ-----TKIKGWVRLLLWMSIYQHVYLNRIPQH 94
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A+++E V +AK P GN+VNGILR + + LP + Q R +A YS
Sbjct: 95 AIINEAVEIAKYKGGPHNGNVVNGILRNFMRTE------LPDFSNINNDQTR-IAIAYSL 147
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSL 289
P W+V+ W + G E+ + + + ++R N+ + A ++ +L E
Sbjct: 148 PKWLVKHWVTHFGIEKTEAMAQSFLTKVNQTVRVNTTQTTIEA-VIAKLQDEGFEVEQDH 206
Query: 290 HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 349
+ E + +K +I++ + K+GL ++QD+S+ V ++ P+PG S++D C+APGGK
Sbjct: 207 DIAECLHIKGN--TIIESRIFKDGLVSIQDKSSMFVANILAPEPGDSVLDACSAPGGKAC 264
Query: 350 YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 409
++A ++ QG V A DI++ ++ ++N + ++++++ H + + DK+L
Sbjct: 265 HIAELMANQGQVDATDIHEHKIELINFNKRKLRLSNILSYQHDATQKYDK----VYDKIL 320
Query: 410 LDAPCSGLGVL 420
+DAPCSGLGVL
Sbjct: 321 VDAPCSGLGVL 331
>gi|220931836|ref|YP_002508744.1| sun protein [Halothermothrix orenii H 168]
gi|219993146|gb|ACL69749.1| sun protein [Halothermothrix orenii H 168]
Length = 440
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 97/321 (30%), Positives = 158/321 (49%), Gaps = 26/321 (8%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-M 166
D RD +T++V G +R ++ LD++ L C ++ M+ +L LR+ Y+I D +
Sbjct: 34 DKRDRAFITELVYGVLRQKKRLDYM--LSCFSKRPLRKMDNEVLSALRVALYQIEYTDSV 91
Query: 167 PPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ--ARALA 224
P A V E V K GA NG+LR + KD P DR Q LA
Sbjct: 92 PARAAVYETVEALKSFTGHGAVKFTNGVLRSYLRNKDKIIFP-------DRNQNPVNFLA 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
YS+P W+++ W G ++ +L + N P ++R N + V Q L+V
Sbjct: 145 NYYSYPEWIIKEWINKYGFKDTERLCQYLNDSPPVTVRYNRLQ-------VDQKRFLEVF 197
Query: 285 HELSLHLDEFI----RVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ ++ ++ V + L K+G VQ +A L V+ P PG ++D
Sbjct: 198 KKYNIEVESTTVPDCYVVNNFNTIKDLPLFKDGGFIVQGPAATLAGFVLGPDPGNRVLDM 257
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
A PGGKT ++A ++ +G + A+DI + +L+++ E VN +++TI D R +
Sbjct: 258 SAGPGGKTTHLAELMNNRGEIIALDIYEHKLKLIEENCNRLGVN-IVKTIKVDGRDYT-- 314
Query: 401 STVKCDKVLLDAPCSGLGVLS 421
S K D VL+DAPC+GLG+++
Sbjct: 315 SQEKFDMVLVDAPCTGLGLVA 335
>gi|325567768|ref|ZP_08144379.1| RNA methyltransferase Sun [Enterococcus casseliflavus ATCC 12755]
gi|325158541|gb|EGC70688.1| RNA methyltransferase Sun [Enterococcus casseliflavus ATCC 12755]
Length = 452
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 119/403 (29%), Positives = 201/403 (49%), Gaps = 65/403 (16%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ L+RI+ GGA+++LL ++ G L+D+D RL+T++V
Sbjct: 13 RFVALEALLRIEKGGAYSNLLLRELMNQGR----------------LNDKDGRLLTELVY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI + LD+ + K ++P + +LR+ Y+++ LD +P +A++ E V +A
Sbjct: 57 GTISRQLLLDYYLDRFI---KNARKVDPWVKTLLRLSLYQMLYLDKVPAHAIIHEAVDIA 113
Query: 180 KVALRPGAGNLVNGILR--------KLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPV 231
K PG G VNG+LR L L+KD P+ +L AT S P+
Sbjct: 114 KAKGNPGTGKFVNGVLRTIQRQGVPDLALIKD----PMERL-----------ATEISLPL 158
Query: 232 WMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV---PHELS 288
W+ ++ K +G EE +L + +P+ + + +++A + +L + P ELS
Sbjct: 159 WLTKKLVKQIGIEETSELG-YALFEPNHASGRIDLQRISQAAAIERLQEEGIDARPSELS 217
Query: 289 LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKT 348
+ + G + + L KEGL +QDES+ LV V+ ++D CAAPGGKT
Sbjct: 218 PY---GVVADKGF--MAGSSLYKEGLLTIQDESSMLVAPVLQVARDHQVLDACAAPGGKT 272
Query: 349 LYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKC 405
++A+ LS V A+DI+ +++++ + A+ V +V+ T D R A + +
Sbjct: 273 THIAAFLSAAEGSKVTALDIHAHKVKLIQQNAQRLGVEAVVETRVMDARETAQTFAPEQF 332
Query: 406 DKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHL 448
D++L+DAPCSGLG++ R ++Y KT Q L
Sbjct: 333 DRILVDAPCSGLGLM----------RRKPDIKYSKTEADFQRL 365
>gi|148270410|ref|YP_001244870.1| sun protein [Thermotoga petrophila RKU-1]
gi|147735954|gb|ABQ47294.1| sun protein [Thermotoga petrophila RKU-1]
Length = 431
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 161/313 (51%), Gaps = 26/313 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LDD+D R ++V G +R LD I L + + P + LR+G Y+++ ++
Sbjct: 34 LDDKDRRFFKELVWGVVRKEELLDWYINQLLKKK----DIPPAVRVALRMGAYQLLFMNS 89
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P YA V E V+L K LVN +LR+L ++P PK L
Sbjct: 90 VPDYAAVSETVKLVK---NENFKKLVNAVLRRL------RTVPEPK----------ELHL 130
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
IYSHP W+V W +L +E +++M WN LR NS T+ +++ L
Sbjct: 131 IYSHPEWIVNYWRSFLPEEAVLRIMKWNQEPLPVMLRVNSL-ATTKEEVIKILAEEGTEA 189
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
H + V+ ++ + ++K+GL +VQ ES+ LV ++ +PG ++D CAAPG
Sbjct: 190 VPGKHAPFSLVVRKLGISMNDSRVIKDGLASVQGESSQLVPFFMELKPGLRVLDTCAAPG 249
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405
GKT +A + QG + A+DI++ + +++ + AK +++S I T AD+ +
Sbjct: 250 GKTTAIAELVKDQGKILAVDISREKTQLVEKHAKRLKLSS-IETKIADVERLTEYVQDTF 308
Query: 406 DKVLLDAPCSGLG 418
D++L+DAPC+ LG
Sbjct: 309 DRILVDAPCTSLG 321
>gi|293572652|ref|ZP_06683620.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E980]
gi|430842687|ref|ZP_19460599.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1007]
gi|431083419|ref|ZP_19495990.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1604]
gi|431115946|ref|ZP_19497851.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1613]
gi|431739264|ref|ZP_19528202.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1972]
gi|431742272|ref|ZP_19531166.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2039]
gi|291607238|gb|EFF36592.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E980]
gi|430492911|gb|ELA69252.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1007]
gi|430565240|gb|ELB04409.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1604]
gi|430568552|gb|ELB07595.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1613]
gi|430596241|gb|ELB34084.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1972]
gi|430600274|gb|ELB37927.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2039]
Length = 452
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 109/366 (29%), Positives = 187/366 (51%), Gaps = 33/366 (9%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L R+ GGA+++LL NEM + +L+ +D+ L T+++
Sbjct: 13 RYMALLTLERVNKGGAYSNLLL--------NEM--------IKQSELNQKDVGLFTELIY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI +R L+ + L K ++ + +L + Y++ LD +P +A+++E V +A
Sbjct: 57 GTISHQRLLEFYVAPLIAKAK---KVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIA 113
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
KV PG G VNG+LR + P L+G R L+ S P+WM +R
Sbjct: 114 KVKGNPGTGKFVNGVLR------NYQRQGAPDLQGITDPIER-LSVKISLPLWMTKRLVD 166
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKT 299
+G EE KL + S R ++R+ ++R + L ++ E S I K
Sbjct: 167 QIGYEETEKLGLSLYQPSHASARVDTRR-LSRDQAITVLQEEEITAEKSQVSPYGIVAKK 225
Query: 300 GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL--SG 357
G ++ + L +G+ +QDES+ LV + +P ++D CAAPGGKT ++AS L S
Sbjct: 226 G--HLASSSLFHDGVMTIQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSC 283
Query: 358 QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSG 416
G V A+D+++ +++++ E A V+S + D R + + D++L+DAPCSG
Sbjct: 284 GGEVIALDVHEHKVKLIEENATRLGVSSAVYAQKMDAREVSKQFEPEQFDRILVDAPCSG 343
Query: 417 LGVLSK 422
LG+L +
Sbjct: 344 LGLLRR 349
>gi|229086418|ref|ZP_04218594.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock3-44]
gi|228696934|gb|EEL49743.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock3-44]
Length = 431
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 109/361 (30%), Positives = 186/361 (51%), Gaps = 44/361 (12%)
Query: 69 MRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRY 128
M+++ GA+++LL +E++ ++D +D+ L+T+IV GTI+ R
Sbjct: 1 MQVEKSGAYSNLLLN----------NLIEKS------EIDRKDIGLLTEIVYGTIQRRDT 44
Query: 129 LDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGA 187
LD+ + +E + +LR+ Y+++ LD +P AV+ E V +AK G
Sbjct: 45 LDYYLQPFLK-----KKVEAWVKVLLRLSLYQMIYLDRVPERAVIHEAVEIAKRRGHKGI 99
Query: 188 GNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAI 247
+VNG+LR + +P +E + + LA SHP W+V+ W G E A
Sbjct: 100 AGMVNGVLRSI------QREGVPSVE-EIQDPVKRLAVAMSHPEWLVQEWVSAYGLETAQ 152
Query: 248 KLMVWNNSDPSFSLRANSRKG-VTRADLVMQLNLLKVPH-ELSLHLDEFIRVKTGLQNVI 305
K+ N P + R N K V A +++ ++ + +LS ++ I+++ G NV
Sbjct: 153 KMCEVNMLPPVSAARVNVDKATVEEAISLLENEGIQAKYGDLS---EDAIQIEKG--NVA 207
Query: 306 QAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAID 365
++G ++QDES+ LV + P G ++D CAAPGGKT ++A L G G V ++D
Sbjct: 208 HTEAFQKGFLSIQDESSMLVARALAPAEGDKVLDSCAAPGGKTTHIAERLKGTGQVMSLD 267
Query: 366 INKGRLRILNETAKLHQVNSVIRTIHADLRT----FADNSTVKCDKVLLDAPCSGLGVLS 421
++ ++R++ + AK + +V T D R FA+ S DK+L+DAPCSG GV+
Sbjct: 268 LHPHKVRLIQQQAKRLGLENV-ETKALDARKVEEHFANES---FDKILVDAPCSGFGVIR 323
Query: 422 K 422
+
Sbjct: 324 R 324
>gi|422413366|ref|ZP_16490325.1| ribosomal RNA small subunit methyltransferase B [Listeria innocua
FSL S4-378]
gi|313618293|gb|EFR90347.1| ribosomal RNA small subunit methyltransferase B [Listeria innocua
FSL S4-378]
Length = 446
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 110/360 (30%), Positives = 188/360 (52%), Gaps = 32/360 (8%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGF 158
+ + L+ D L+T++V GT + + LD+ + F + EP + +LR+
Sbjct: 32 ALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLA-------PFLNKEPDNWVKNLLRMSV 84
Query: 159 YEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDR 217
Y++ LD +P +A+++E +AK G VNG+LR V+ K S+ L K D
Sbjct: 85 YQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRN-VIRKGVPSIDLIK----DP 139
Query: 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQ 277
Q A+ T S P W+ RRW G E+ ++ + P S+R N + + L+ +
Sbjct: 140 VQKIAVET--SLPEWLARRWADQYGLEKLREIGLAFLVAPHQSIRVNQTE-IRAEQLIKE 196
Query: 278 LNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 337
LN + + +DE + V+ G +V + K+G C++QDES+ LV + + ++
Sbjct: 197 LNDQGITATRNEFIDEALLVEKG--SVAETKAYKDGKCSIQDESSMLVAYALQLEDNLTV 254
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397
+D CAAPGGKT ++A + G G+V+A+DI++ + +++++ AK Q+ + IRT H D RT
Sbjct: 255 LDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQAAKRLQLLN-IRTAHLDARTA 313
Query: 398 ADN-STVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
+ + D++L+DAPCSG GVL R ++Y KT + L E + +L
Sbjct: 314 STMFESETFDRILVDAPCSGFGVL----------RRKPDIKYAKTEKDIHKLAEIQLAIL 363
>gi|167037728|ref|YP_001665306.1| sun protein [Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|320116143|ref|YP_004186302.1| sun protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|166856562|gb|ABY94970.1| sun protein [Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|319929234|gb|ADV79919.1| sun protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
Length = 444
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 93/322 (28%), Positives = 161/322 (50%), Gaps = 17/322 (5%)
Query: 103 RTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIV 162
+ ++L + D ++V G I + LD ++ +M L +G Y+++
Sbjct: 30 KGQELKEIDRGFTKELVFGVIERKYTLDFILSFFVKKAPDLKTM-----IFLEMGLYQLL 84
Query: 163 KLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
+D +P YA ++E V +AK L N +N +LR K+ P +R +
Sbjct: 85 YMDKVPSYAAINETVNIAKKVLGIKRANFINAVLRNYDREKERVIFP-----DKERDLKQ 139
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
L YS+P W+V R +E+A L+ N P R N+ K + DL L+
Sbjct: 140 YLKVTYSYPDWIVERLLNNYDEEKAEALLKSLNERPEICYRVNTLK-IDIEDLKRLLDSD 198
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
+ ++ +L+E + + ++N L KEG +QDE++ LV +++P+ G++++D C
Sbjct: 199 GIAYKKGYYLEEALYI--YIKNPESHQLYKEGFIYIQDEASMLVSKILNPKEGETVIDVC 256
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401
AAPGGKT ++A + G V A D++ RL ++ E K + +V +T D TF +
Sbjct: 257 AAPGGKTTHIAQLMKNNGKVVAFDLHPHRLELIKENCKRLGITNV-KTEAFD-STFVNKK 314
Query: 402 TV-KCDKVLLDAPCSGLGVLSK 422
+ K DKVL D PC+G+G++ K
Sbjct: 315 YLEKADKVLADVPCTGIGIIRK 336
>gi|431600935|ref|ZP_19522420.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1861]
gi|430590092|gb|ELB28177.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1861]
Length = 452
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 109/366 (29%), Positives = 187/366 (51%), Gaps = 33/366 (9%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L R+ GGA+++LL NEM + +L+ +D+ L T+++
Sbjct: 13 RYMALLTLERVNKGGAYSNLLL--------NEM--------IKQSELNQKDVGLFTELIY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI +R L+ + L K ++ + +L + Y++ LD +P +A+++E V +A
Sbjct: 57 GTISHQRLLEFYVAPLIAKAK---KVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIA 113
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
KV PG G VNG+LR + P L+G R L+ S P+WM +R
Sbjct: 114 KVKGNPGTGKFVNGVLR------NYQRQGAPDLQGITDPIER-LSVKISLPLWMTKRLVD 166
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKT 299
+G EE KL + S R ++R+ ++R + L ++ E S I K
Sbjct: 167 QIGYEETEKLGLSLYQPSHASARVDTRR-LSRDQAITVLQEEEITAEKSQVSPYGIIAKK 225
Query: 300 GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL--SG 357
G ++ + L +G+ +QDES+ LV + +P ++D CAAPGGKT ++AS L S
Sbjct: 226 G--HLASSSLFHDGVMTIQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSC 283
Query: 358 QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSG 416
G V A+D+++ +++++ E A V+S + D R + + D++L+DAPCSG
Sbjct: 284 GGEVIALDVHEHKVKLIEENATRLGVSSAVYAQKMDAREVSKQFEPEQFDRILVDAPCSG 343
Query: 417 LGVLSK 422
LG+L +
Sbjct: 344 LGLLRR 349
>gi|331269683|ref|YP_004396175.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum BKT015925]
gi|329126233|gb|AEB76178.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum BKT015925]
Length = 443
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 101/321 (31%), Positives = 168/321 (52%), Gaps = 21/321 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
++D+D L+T+IV GTI+++ +D + L + +K S++ +L ILR Y+I LD
Sbjct: 35 INDKDKGLITEIVYGTIKYKYTIDTI--LNAYLKKGTKSVDSYILNILRTTIYQIKYLDK 92
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A V+E V +AK G LVNG+LR + L K+ N + L+
Sbjct: 93 IPNFAAVNEAVNIAKKHKSIGESKLVNGVLRNYLR-------NLDKVYYNKNSIIERLSF 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
YS W+V+ + +E A K++ N P+ ++R N+ K D N L+ +
Sbjct: 146 EYSCEKWLVKMFINQYNEEIAEKILKGLNERPAVTVRVNNLK----TDYDEAFNKLE-EY 200
Query: 286 ELSLH----LDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
E S+ E I + G +++ L ++G VQDESA LV ++ + G ++D C
Sbjct: 201 EYSIEEGYVCPEAIVINKG-KSIESNPLFEDGKITVQDESAMLVAPTMNVEQGDLVLDLC 259
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401
+APGGKT +++ ++ G V A DI++ +L ++ + AK +N+ I D F +
Sbjct: 260 SAPGGKTTHISEIMNNTGKVKAFDIHENKLNLVKDNAKRLGINN-IECSKLDASKFNEEL 318
Query: 402 TVKCDKVLLDAPCSGLGVLSK 422
D VL+D PCSGLG++ K
Sbjct: 319 KEIADAVLIDVPCSGLGIIRK 339
>gi|257888654|ref|ZP_05668307.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,141,733]
gi|257824708|gb|EEV51640.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,141,733]
Length = 452
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 109/366 (29%), Positives = 187/366 (51%), Gaps = 33/366 (9%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L R+ GGA+++LL NEM + +L+ +D+ L T+++
Sbjct: 13 RYMALLTLERVNKGGAYSNLLL--------NEM--------IKQSELNQKDVGLFTELIY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI +R L+ + L K ++ + +L + Y++ LD +P +A+++E V +A
Sbjct: 57 GTISHQRLLEFYVAPLIAKAK---KVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIA 113
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
KV PG G VNG+LR + P L+G R L+ S P+WM +R
Sbjct: 114 KVKGNPGTGKFVNGVLR------NYQRQGAPDLQGIADPIER-LSVKISLPLWMTKRLVD 166
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKT 299
+G EE KL + S R ++R+ ++R + L ++ E S I K
Sbjct: 167 QIGYEETEKLGLSLYQPSHASARVDTRR-LSRDQAITVLQEEEISAEKSQVSPYGIVAKK 225
Query: 300 GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL--SG 357
G ++ + L +G+ +QDES+ LV + +P ++D CAAPGGKT ++AS L S
Sbjct: 226 G--HLASSSLFHDGVMTIQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSC 283
Query: 358 QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSG 416
G V A+D+++ +++++ E A V+S + D R + + D++L+DAPCSG
Sbjct: 284 GGEVIALDVHEHKVKLIEENATRLGVSSAVYAQKMDAREVSKQFEPEQFDRILVDAPCSG 343
Query: 417 LGVLSK 422
LG+L +
Sbjct: 344 LGLLRR 349
>gi|227552686|ref|ZP_03982735.1| RNA methyltransferase [Enterococcus faecium TX1330]
gi|257897390|ref|ZP_05677043.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium Com12]
gi|293378850|ref|ZP_06625005.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium PC4.1]
gi|424762075|ref|ZP_18189601.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX1337RF]
gi|431043192|ref|ZP_19492991.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1590]
gi|431753358|ref|ZP_19542032.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2620]
gi|431763474|ref|ZP_19552024.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E3548]
gi|227178181|gb|EEI59153.1| RNA methyltransferase [Enterococcus faecium TX1330]
gi|257833955|gb|EEV60376.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium Com12]
gi|292642391|gb|EFF60546.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium PC4.1]
gi|402425837|gb|EJV57981.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX1337RF]
gi|430561636|gb|ELB00899.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1590]
gi|430612265|gb|ELB49316.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2620]
gi|430622247|gb|ELB58984.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E3548]
Length = 452
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 109/366 (29%), Positives = 187/366 (51%), Gaps = 33/366 (9%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L R+ GGA+++LL NEM + +L+ +D+ L T+++
Sbjct: 13 RYMALLTLERVNKGGAYSNLLL--------NEM--------IKQSELNQKDVGLFTELIY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI +R L+ + L K ++ + +L + Y++ LD +P +A+++E V +A
Sbjct: 57 GTISHQRLLEFYVASLIAKAK---KVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIA 113
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
KV PG G VNG+LR + P L+G R L+ S P+WM +R
Sbjct: 114 KVKGNPGTGKFVNGVLR------NYQRQGAPDLQGIADPIER-LSVKISLPLWMTKRLVD 166
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKT 299
+G EE KL + S R ++R+ ++R + L ++ E S I K
Sbjct: 167 QIGYEETEKLGLSLYQPSHASARVDTRR-LSRDQAITVLQEEEISAEKSQVSPYGIVAKK 225
Query: 300 GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL--SG 357
G ++ + L +G+ +QDES+ LV + +P ++D CAAPGGKT ++AS L S
Sbjct: 226 G--HLASSSLFHDGVMTIQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSC 283
Query: 358 QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSG 416
G V A+D+++ +++++ E A V+S + D R + + D++L+DAPCSG
Sbjct: 284 GGEVIALDVHEHKVKLIEENATRLGVSSAVYAQKMDAREVSKQFEPEQFDRILVDAPCSG 343
Query: 417 LGVLSK 422
LG+L +
Sbjct: 344 LGLLRR 349
>gi|425055273|ref|ZP_18458754.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 505]
gi|403034215|gb|EJY45679.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 505]
Length = 452
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 109/366 (29%), Positives = 187/366 (51%), Gaps = 33/366 (9%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L R+ GGA+++LL NEM + +L+ +D+ L T+++
Sbjct: 13 RYMALLTLERVNKGGAYSNLLL--------NEM--------IKQSELNQKDVGLFTELIY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI +R L+ + L K ++ + +L + Y++ LD +P +A+++E V +A
Sbjct: 57 GTISHQRLLEFYVAPLIAKAK---KVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIA 113
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
KV PG G VNG+LR + P L+G R L+ S P+WM +R
Sbjct: 114 KVKGNPGTGKFVNGVLR------NYQRQGAPDLQGIADPIER-LSVKISLPLWMTKRLVD 166
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKT 299
+G EE KL + S R ++R+ ++R + L ++ E S I K
Sbjct: 167 QIGYEETEKLGLSLYQPSHASARVDTRR-LSRNQAITVLQEEEITAEKSQVSPYGIVAKK 225
Query: 300 GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL--SG 357
G ++ + L +G+ +QDES+ LV + +P ++D CAAPGGKT ++AS L S
Sbjct: 226 G--HLASSSLFHDGVMTIQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSC 283
Query: 358 QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSG 416
G V A+D+++ +++++ E A V+S + D R + + D++L+DAPCSG
Sbjct: 284 GGEVIALDVHEHKVKLIEENATRLGVSSAVYAQKMDAREVSKQFEPEQFDRILVDAPCSG 343
Query: 417 LGVLSK 422
LG+L +
Sbjct: 344 LGLLRR 349
>gi|312111726|ref|YP_003990042.1| sun protein [Geobacillus sp. Y4.1MC1]
gi|423720641|ref|ZP_17694823.1| ribosomal RNA small subunit methyltransferase B [Geobacillus
thermoglucosidans TNO-09.020]
gi|311216827|gb|ADP75431.1| sun protein [Geobacillus sp. Y4.1MC1]
gi|383365994|gb|EID43285.1| ribosomal RNA small subunit methyltransferase B [Geobacillus
thermoglucosidans TNO-09.020]
Length = 447
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 101/322 (31%), Positives = 169/322 (52%), Gaps = 18/322 (5%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
T L +RD+RL+T+IV GTI+ R LD+ + K +E + +LR+ Y+++
Sbjct: 34 THRLSERDVRLLTEIVYGTIQRRDTLDYYLAPFL---KKARKLERWVRVLLRLTLYQVLY 90
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
LD +P A + E V +AK G +LVNG++R ++ +P LE N +
Sbjct: 91 LDRIPDRAAIFEAVEIAKKRGHQGIASLVNGVMRAIL------RQGVPPLE-NIEDEVER 143
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
LA SHP W+V+RW + G E ++ N P + R N+ + +T A+ + +L
Sbjct: 144 LAVATSHPRWLVKRWVEQYGWMETKRMCETNLLPPKQTARVNTAR-ITIAETLDRLRQEG 202
Query: 283 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
+ E I+ K G N+ + G +QDES+ LV + P+ + ++D CA
Sbjct: 203 MEVSRGEVAAEAIQAKKG--NLANTEAFRRGWITIQDESSMLVARALGPKEHERVLDSCA 260
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV-IRTIHADLRTFADNS 401
APGGK+ ++A ++ G V DI++ ++ ++ E AK Q+ ++ RT+ D R +
Sbjct: 261 APGGKSTHIAELMNNTGQVICADIHEHKVNLIEENAKRLQLTNISARTL--DSRRLGEVF 318
Query: 402 TVKC-DKVLLDAPCSGLGVLSK 422
+ DK+L+DAPCSG GV+ +
Sbjct: 319 ERETFDKILVDAPCSGFGVIRR 340
>gi|282882115|ref|ZP_06290756.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus
lacrimalis 315-B]
gi|281298145|gb|EFA90600.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus
lacrimalis 315-B]
Length = 430
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 102/344 (29%), Positives = 172/344 (50%), Gaps = 36/344 (10%)
Query: 91 NEMGYVERTLGF-RTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPL 149
N+ ++E L + ++ DRD + +I G IR R YLD++I + + + F + +
Sbjct: 17 NKGAFLEEQLNIIKQSNISDRDFTFIKNITTGVIRNRTYLDYVIKI--NSKIRFKKIHKI 74
Query: 150 LLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLP 208
+ IL + Y+ LD +P Y++VDE+V+LAK+ G+ + VN ILR +V KD
Sbjct: 75 IAIILEMAIYQYYFLDKIPNYSIVDESVKLAKLYGNKGSSSFVNAILRNIVS-KDK---E 130
Query: 209 LPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKG 268
+ K+E L+ YSHP + + + + G E L+ NN +P F +R N+ K
Sbjct: 131 VVKIED----SIENLSVYYSHPKFYTKYFYENYGVELTKNLLKANNQEPDFVIRVNTLK- 185
Query: 269 VTRADLVMQLNLLKVPHELSLHLDEFIRVKTGL----------QNVIQAGLLKEGLCAVQ 318
T+ D H L DE V GL +N+ +EG Q
Sbjct: 186 -TKKD-----------HLYKLLKDENFNVIDGLVPDSLIIENPKNIFDTQAFREGFFYAQ 233
Query: 319 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA 378
D S+ V +++P+ +I+D CAAPGGK+ ++ + L G + A D + +L ++ + A
Sbjct: 234 DFSSIKVSQILNPKKNSTILDLCAAPGGKSTHLGAILENTGQIVACDKSLYKLDLIKDNA 293
Query: 379 KLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
K V+++ +I+ D + ++ K D L+DAPCS +G+ K
Sbjct: 294 KRLGVSNIKVSIN-DASKYNNDFEDKFDYCLVDAPCSAIGLYRK 336
>gi|392374946|ref|YP_003206779.1| Sun protein [Candidatus Methylomirabilis oxyfera]
gi|258592639|emb|CBE68948.1| Sun protein [Candidatus Methylomirabilis oxyfera]
Length = 467
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 109/324 (33%), Positives = 168/324 (51%), Gaps = 21/324 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L +D L T++ G +RW+ LD+L+ + ++ + ++P L ++LR+G Y+I+ L
Sbjct: 49 LSQQDRALATELTYGVLRWQGRLDYLLAAVT--DRPWDRVDPALRRLLRLGAYQILFLTR 106
Query: 166 MPPYAVVDENVRLAKVALR----PGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
+P YA V+E V LA+ +R P A VN ILR+L L+ + ++ P G+
Sbjct: 107 VPAYAAVNETVALAQDVMRSQLKPVAKAFVNAILRRL--LERHATIRFPDPSGDPVG--- 161
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
ALA +SHP W+V RW K LG EE L+ NN + S+ N V R +Q L
Sbjct: 162 ALAARWSHPSWLVARWLKRLGPEETEALLKANNDTSALSVMVNL---VKRQPEEVQERLT 218
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQA---GLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 338
++ S+ F+ L + +A +G DE+A L V +++PQPG ++
Sbjct: 219 RIAG--SVTPGRFVSGAFHLNDGAEALRDPAFADGWYFPMDEAAALPVLMLNPQPGDVVL 276
Query: 339 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398
D C+ GGKT + L GQG V A+D + R L E ++ V + AD R A
Sbjct: 277 DACSGGGGKTALLLGRLGGQGRVIALDPSARAHRRLREARTRLSLDRVF-PVQADARQAA 335
Query: 399 DNSTVKCDKVLLDAPCSGLGVLSK 422
T + D++L+DAPCSGLG L +
Sbjct: 336 QLFTRQVDRILVDAPCSGLGTLRR 359
>gi|325294320|ref|YP_004280834.1| sun protein [Desulfurobacterium thermolithotrophum DSM 11699]
gi|325064768|gb|ADY72775.1| sun protein [Desulfurobacterium thermolithotrophum DSM 11699]
Length = 442
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 109/357 (30%), Positives = 175/357 (49%), Gaps = 19/357 (5%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
T L +D + +IV GT+R+ R LD I K + + LR+ Y+I
Sbjct: 31 TSRLHPQDRAFIREIVSGTVRFLRLLDFSIEKATG--KNLKRQKNTVRNSLRVIAYQIFF 88
Query: 164 LDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
++PPYA ++E V K L A VN I +K++ + +D + L
Sbjct: 89 TNVPPYAALNETVEAVKKILGKKAAGFVNAISKKIIGFDYKKEIE----RISDYFER--L 142
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
+ +YS WMV+RW+ + G+EE KL+ N +R N+ K +++ +L+ L K+
Sbjct: 143 SILYSFETWMVKRWSNFYGKEEIEKLLKGLNRVAPLFIRVNTIK-ISQQELLNLLEKTKI 201
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
E + IR+K G + KEG +QD ++ L ++DP+ G+ I+D AA
Sbjct: 202 DAEPHPFIPYMIRIK-GRVPIESIPGYKEGFFYIQDPASFLSAYLLDPKQGEIILDVGAA 260
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK---LHQVNSVIRTIHADLRTFADN 400
PGGKT ++S + + A+DINK R+++L K + V V+ I D + F +
Sbjct: 261 PGGKTTALSSLTIDKARIIAVDINKERMKLLKNNLKRLGISNVELVLTDIQKD-KNFIEK 319
Query: 401 STVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQ-HLCETKYLLL 456
DK+L+DAPCS GV+ + G W KSL+ K + +Q +L + Y LL
Sbjct: 320 HENSFDKILIDAPCSATGVIRRHPE--GKWN--KSLKLIKYNQTIQRNLLSSCYKLL 372
>gi|315924509|ref|ZP_07920730.1| RNA methyltransferase Sun [Pseudoramibacter alactolyticus ATCC
23263]
gi|315622213|gb|EFV02173.1| RNA methyltransferase Sun [Pseudoramibacter alactolyticus ATCC
23263]
Length = 440
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 110/359 (30%), Positives = 184/359 (51%), Gaps = 32/359 (8%)
Query: 68 LMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRR 127
L++I GAF++L E+ L F +D + L T +V G ++ +
Sbjct: 19 LLKIDREGAFSNL-----------EIRQTLSRLSFNAEDAN-----LYTLLVYGVLQNQI 62
Query: 128 YLDHLICLLCHDEK--TFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALR 184
+LD+ + L + K F + E ILRI Y+I+KLD +P YA V E V L R
Sbjct: 63 FLDYCLDQLIKEPKRVDFETRE-----ILRIAAYQILKLDRIPDYAAVSEAVLLCGKVNR 117
Query: 185 PGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQE 244
G VNG+LR L+ N + G+ R + LAT +S P+ +V + + G+E
Sbjct: 118 RAKG-FVNGVLRNLI---RNKTRLFDISNGSFRNEKEVLATRFSIPLPVVHYYFEAYGKE 173
Query: 245 EAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVK-TGLQN 303
A ++ N S+R N+ K ++R DL +L + E+ + + +K
Sbjct: 174 AAPAILAQMNVPAPLSVRVNTLK-LSREDLAAKLQAEGLAVEVGQLSSDCLYLKGISASE 232
Query: 304 VIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYA 363
++Q+ K+G +QD+ A L+ ++DP+PG+ I+D CAAPGGKT ++A +S G + A
Sbjct: 233 LVQSCWFKDGWLTIQDQGAMLIAELLDPRPGERILDMCAAPGGKTTHLAQLMSDAGEIIA 292
Query: 364 IDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
DI RL+++ + AK ++++ + ++ + + DK+LLDAPCSG GV+ +
Sbjct: 293 RDIYPSRLQLIEDAAKRLGISNIKTELWDGIQPPKEEAAF--DKILLDAPCSGYGVIRR 349
>gi|317056478|ref|YP_004104945.1| sun protein [Ruminococcus albus 7]
gi|315448747|gb|ADU22311.1| sun protein [Ruminococcus albus 7]
Length = 431
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 161/318 (50%), Gaps = 15/318 (4%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
D D RD + + + G I R LD +I L + K S + L ILR G Y++ +D
Sbjct: 34 DFDKRDKKFIAALFYGVIERRLTLDAIIVDLSKNPK--SKLNYTLRNILRCGLYQLKYMD 91
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P A VDE+V LAK P A NG+LR+ + S LPK ++ LA
Sbjct: 92 SVPDNAAVDESVELAKKCRNPAAPGFTNGLLREFI----RRSKELPKT----NSETERLA 143
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
YS P W+V++W+ G++ + L+ + +++ N+ G L M L V
Sbjct: 144 LEYSCPEWLVKKWSFEYGKDRCLSLLKTSLGQAPTTIKVNNLSGGIEDTLDM-LIADGVT 202
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
E S L+ + V + + ++G VQD ++ L +DPQPG ++D C+AP
Sbjct: 203 FERSKILEYAVNVANA-GAIEKTEAYRQGKFHVQDIASQLCCKALDPQPGDIVLDLCSAP 261
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404
GGKT +A ++ +G V A D++ R++++ A+ + V ++ + + F + V
Sbjct: 262 GGKTFTIAEMMNNEGKVLAFDLHPNRVKLIRSGAERLGLTCVTADVN-NAKIFNSDIPV- 319
Query: 405 CDKVLLDAPCSGLGVLSK 422
DKVL+DAPCSGLGV+ +
Sbjct: 320 ADKVLVDAPCSGLGVIRR 337
>gi|95928560|ref|ZP_01311307.1| sun protein [Desulfuromonas acetoxidans DSM 684]
gi|95135350|gb|EAT17002.1| sun protein [Desulfuromonas acetoxidans DSM 684]
Length = 479
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 107/319 (33%), Positives = 164/319 (51%), Gaps = 12/319 (3%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD RD L T++V G +R R LD + L + + ++P +L++LR+G Y++ LD
Sbjct: 60 LDPRDRALATELVYGVLRRRGNLDFI--LKAYSRQPLKKLQPKVLRLLRLGIYQLCYLDR 117
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P AVV V LA+ LVNG+LR + + P P+ R L
Sbjct: 118 IPDRAVVHSMVELARRCGLERVSGLVNGVLRSYLREPNRVVWPDPR-----RDTQGWLEH 172
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
S P W+ +RW G E A+ L S P ++R N+ K +TR V QL +
Sbjct: 173 GLSLPHWLAQRWLVQYGAEGAMALAESQLSAPPVTVRVNTLK-MTRNAFVAQLKQRDIAA 231
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
E + E + V ++ + +EG VQDE++ L+ ++ +PGQ ++D CAAPG
Sbjct: 232 EPTRFAPEGV-VLPHAGDLQRLPGREEGWYQVQDEASMLIAHLLSVEPGQRLLDGCAAPG 290
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL-RTFADNSTVK 404
GKT ++A+ + + A+D++ RL IL + AK IRT+ D+ + D S
Sbjct: 291 GKTTHLAALTDNRSEILALDLHSQRLEILQQGAKRLGCQQ-IRTLACDMTQPCEDLSAGG 349
Query: 405 CDKVLLDAPCSGLGVLSKT 423
D+VL+DAPCSGLGVL +
Sbjct: 350 FDRVLIDAPCSGLGVLRRN 368
>gi|336236100|ref|YP_004588716.1| sun protein [Geobacillus thermoglucosidasius C56-YS93]
gi|335362955|gb|AEH48635.1| sun protein [Geobacillus thermoglucosidasius C56-YS93]
Length = 447
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 101/322 (31%), Positives = 169/322 (52%), Gaps = 18/322 (5%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
T L +RD+RL+T+IV GTI+ R LD+ + K +E + +LR+ Y+++
Sbjct: 34 THRLSERDVRLLTEIVYGTIQRRDTLDYYLAPFL---KKARKLERWVRVLLRLTLYQVLY 90
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
LD +P A + E V +AK G +LVNG++R ++ +P LE N +
Sbjct: 91 LDRIPDRAAIFEAVEIAKKRGHQGIASLVNGVMRAIL------RQGVPPLE-NIEDEVER 143
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
LA SHP W+V+RW + G E ++ N P + R N+ + +T A+ + +L
Sbjct: 144 LAVATSHPRWLVKRWVEQYGWIETKRMCETNLLPPKQTARVNTAR-ITIAETLDRLRQEG 202
Query: 283 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
+ E I+ K G N+ + G +QDES+ LV + P+ + ++D CA
Sbjct: 203 MEVSRGEVAAEAIQAKKG--NLANTEAFRRGWITIQDESSMLVARALGPKEHERVLDSCA 260
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV-IRTIHADLRTFADNS 401
APGGK+ ++A ++ G V DI++ ++ ++ E AK Q+ ++ RT+ D R +
Sbjct: 261 APGGKSTHIAELMNNTGQVICADIHEHKVNLIEENAKRLQLTNISARTL--DSRRLGEVF 318
Query: 402 TVKC-DKVLLDAPCSGLGVLSK 422
+ DK+L+DAPCSG GV+ +
Sbjct: 319 ERETFDKILVDAPCSGFGVIRR 340
>gi|407796647|ref|ZP_11143600.1| Sun protein [Salimicrobium sp. MJ3]
gi|407019163|gb|EKE31882.1| Sun protein [Salimicrobium sp. MJ3]
Length = 450
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 96/315 (30%), Positives = 163/315 (51%), Gaps = 20/315 (6%)
Query: 110 RDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPP 168
+D L+T++V GT++ R LD+ + +K + P + +L + Y++ LD +P
Sbjct: 42 QDSGLLTELVYGTLQHRDLLDYWLEPFMKKQKKIT---PWVKWLLYMSVYQMEMLDRIPD 98
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ--ARALATI 226
+AV++E V ++K G + N +LR S+ + D + A LA
Sbjct: 99 HAVLNEAVSISKRKGHKGTASFTNAVLR---------SVQREGVRSADEIEDSAERLAVR 149
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHE 286
SHP W+V RW G E + + N S+R ++R + V +L E
Sbjct: 150 TSHPHWLVNRWIDQYGYETTESMCMTNQLRMPESIRVQPLL-LSRGEAVTELERDGFEVE 208
Query: 287 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 346
S + I + G N+I+ L +EGL +QD+S+ LV +++P+PGQ+++D CAAPGG
Sbjct: 209 ESRFSSQGIILHEG--NIIKHRLFREGLVTIQDQSSMLVAELMNPEPGQTVLDACAAPGG 266
Query: 347 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKC 405
KT +++ + +G VYA D++K + ++ E A + ++ + I + D R D +
Sbjct: 267 KTTHISEKMKNEGTVYAYDLHKKKAALIREKANILRLTN-IHAENYDARKLQDKHENETF 325
Query: 406 DKVLLDAPCSGLGVL 420
D VL+DAPCSG GV+
Sbjct: 326 DHVLVDAPCSGFGVI 340
>gi|16078637|ref|NP_389456.1| RNA-binding Sun protein [Bacillus subtilis subsp. subtilis str.
168]
gi|221309449|ref|ZP_03591296.1| hypothetical protein Bsubs1_08691 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221313774|ref|ZP_03595579.1| hypothetical protein BsubsN3_08627 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221318698|ref|ZP_03599992.1| hypothetical protein BsubsJ_08561 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221322969|ref|ZP_03604263.1| hypothetical protein BsubsS_08667 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|402775819|ref|YP_006629763.1| RNA-binding Sun protein [Bacillus subtilis QB928]
gi|418033279|ref|ZP_12671756.1| hypothetical protein BSSC8_27000 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|452914583|ref|ZP_21963210.1| ribosomal RNA small subunit methyltransferase B [Bacillus subtilis
MB73/2]
gi|3915867|sp|P94464.2|RSMB_BACSU RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|2337803|emb|CAA74264.1| putative Fmu protein [Bacillus subtilis subsp. subtilis str. 168]
gi|2633946|emb|CAB13447.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus subtilis
subsp. subtilis str. 168]
gi|351469427|gb|EHA29603.1| hypothetical protein BSSC8_27000 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|402481001|gb|AFQ57510.1| RNA-binding Sun protein [Bacillus subtilis QB928]
gi|407958981|dbj|BAM52221.1| RNA-binding Sun protein [Synechocystis sp. PCC 6803]
gi|407964558|dbj|BAM57797.1| RNA-binding Sun protein [Bacillus subtilis BEST7003]
gi|452117003|gb|EME07398.1| ribosomal RNA small subunit methyltransferase B [Bacillus subtilis
MB73/2]
Length = 447
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 90/323 (27%), Positives = 174/323 (53%), Gaps = 16/323 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
++ +L D++ L+T++V GT++ + LD+++ + + ++P ++Q+LR+ Y++
Sbjct: 32 IKSNELSDQNRGLLTELVYGTLQNKIALDYMLKPFINKPQ---KVKPWVIQLLRLSLYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK+ G + VNG+LR + +P + +
Sbjct: 89 EYLEKIPDRAAIHEAVEIAKIRGHKGIASFVNGVLRSI------QREGVPSFDAIEDP-V 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R LAT SHP W+V+ W G E A K+ + P +LR N K RA+L+ Q+
Sbjct: 142 RRLATETSHPEWLVKEWADAYGFEAAEKICRIHLIPPKQTLRVNQMKA-DRAELLDQMAA 200
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ E ++ +++ G + + G ++QDES+ LV +DP+ ++++D
Sbjct: 201 EGIEVEKGDLAEDAVKLLKG--TIAGTHFFQNGEVSIQDESSMLVARALDPKSDETVLDA 258
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
CAAPGGK+ ++A + +G V ++D++K +++++ E A + ++I D R +
Sbjct: 259 CAAPGGKSAHIAELMKNKGSVTSLDLHKHKVKLIKEAADRLGL-TIIHAETMDARKAGET 317
Query: 401 -STVKCDKVLLDAPCSGLGVLSK 422
+ D++L+DAPCSG GV+ +
Sbjct: 318 FENEQFDRILVDAPCSGFGVIRR 340
>gi|16801002|ref|NP_471270.1| hypothetical protein lin1936 [Listeria innocua Clip11262]
gi|423098731|ref|ZP_17086439.1| ribosomal RNA small subunit methyltransferase B [Listeria innocua
ATCC 33091]
gi|16414437|emb|CAC97166.1| lin1936 [Listeria innocua Clip11262]
gi|370794558|gb|EHN62321.1| ribosomal RNA small subunit methyltransferase B [Listeria innocua
ATCC 33091]
Length = 446
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 110/360 (30%), Positives = 188/360 (52%), Gaps = 32/360 (8%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGF 158
+ + L+ D L+T++V GT + + LD+ + F + EP + +LR+
Sbjct: 32 ALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLA-------PFLNKEPDNWVKNLLRMSV 84
Query: 159 YEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDR 217
Y++ LD +P +A+++E +AK G VNG+LR V+ K S+ L K D
Sbjct: 85 YQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRN-VIRKGVPSIDLIK----DP 139
Query: 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQ 277
Q A+ T S P W+ RRW G E+ ++ + P S+R N + + L+ +
Sbjct: 140 VQKIAVET--SLPEWLARRWADQYGLEKLREIGLAFLVAPHQSIRVNQTE-IRAEQLIKE 196
Query: 278 LNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 337
LN + + +DE + V+ G +V + K+G C++QDES+ LV + + ++
Sbjct: 197 LNDQGITATRNEFIDEALLVEKG--SVAETKAYKDGKCSIQDESSMLVAYALQLEDNLTV 254
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397
+D CAAPGGKT ++A + G G+V+A+DI++ + +++++ AK Q+ + IRT H D RT
Sbjct: 255 LDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQAAKRLQLLN-IRTAHLDARTA 313
Query: 398 ADNSTVKC-DKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
+ + D++L+DAPCSG GVL R ++Y KT + L E + +L
Sbjct: 314 STMFEPETFDRILVDAPCSGFGVL----------RRKPDIKYAKTEKDIHKLAEIQLAIL 363
>gi|294623688|ref|ZP_06702521.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium U0317]
gi|291596903|gb|EFF28121.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium U0317]
Length = 445
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 109/366 (29%), Positives = 185/366 (50%), Gaps = 33/366 (9%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L R+ GGA+++LL NEM + +L+ +D+ L T+++
Sbjct: 6 RYMALLTLERVNKGGAYSNLLL--------NEM--------IKQSELNQKDVGLFTELIY 49
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI +R L+ + L K +LL + Y++ LD +P +A+++E V +A
Sbjct: 50 GTISHQRLLEFYVAPLIAKAKKVDDWVKMLL---YLSVYQLEFLDKVPAHAILNEAVEIA 106
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
KV PG G VNG+LR + P L+G R L+ S P+WM +R
Sbjct: 107 KVKGNPGTGKFVNGVLR------NYQRQGAPDLQGIADPIER-LSVKISLPLWMTKRLVD 159
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKT 299
+G EE KL + S R ++R+ ++R + L ++ E S I K
Sbjct: 160 QIGYEETEKLGLSLYQPSHASARVDTRR-LSRDQAITVLQEEEITAEKSQVSPYGIVAKK 218
Query: 300 GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL--SG 357
G ++ + L +G+ +QDES+ LV + +P ++D CAAPGGKT ++AS L S
Sbjct: 219 G--HLASSSLFHDGVMTIQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSC 276
Query: 358 QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSG 416
G V A+D+++ +++++ + A V+S + D R + + D++L+DAPCSG
Sbjct: 277 GGEVVALDVHEHKVKLIEDNAARLGVSSAVYAQKMDAREVSKQFEAEQFDRILVDAPCSG 336
Query: 417 LGVLSK 422
LG+L +
Sbjct: 337 LGLLRR 342
>gi|152976231|ref|YP_001375748.1| sun protein [Bacillus cytotoxicus NVH 391-98]
gi|152024983|gb|ABS22753.1| sun protein [Bacillus cytotoxicus NVH 391-98]
Length = 444
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 108/357 (30%), Positives = 178/357 (49%), Gaps = 34/357 (9%)
Query: 68 LMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRR 127
LM+++ GA+++LL +E++ + +D+ L+T+IV GTI+ R
Sbjct: 13 LMQVEKSGAYSNLLLNH----------LIEKST------IHKKDIGLLTEIVYGTIQRRD 56
Query: 128 YLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPG 186
LD+ + ++ + +LR+ Y+++ LD +P A + E V +AK G
Sbjct: 57 TLDYYLQPFLR-----KKVDAWVRVLLRLSLYQMLYLDRVPERAAIHEAVEIAKRRGHKG 111
Query: 187 AGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEA 246
+VNG+LR + +P L+ R LA SHP W+V+ W G E A
Sbjct: 112 IAGMVNGVLRSI------QREGVPSLDELKDPVER-LAIAMSHPTWLVQEWVAAYGLETA 164
Query: 247 IKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQ 306
K+ N P + R N K +T + + LN V + D+ I+++ G NV
Sbjct: 165 EKMCEVNMLPPVPTARVNVDK-ITVEEAIDLLNQEGVEAKRGDLSDDAIQIEKG--NVAH 221
Query: 307 AGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDI 366
++G ++QDES+ LV V+P G I+D CAAPGGKT +MA L G G V ++D+
Sbjct: 222 TEAFQKGFLSIQDESSMLVARAVEPSKGDMILDSCAAPGGKTTHMAERLRGTGKVMSLDL 281
Query: 367 NKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSGLGVLSK 422
+ ++R++ + A + +V T D R ++ DK+L+DAPCSG GV+ +
Sbjct: 282 HDHKVRLIKQQANRLGLENV-ETKALDARKVQEHFQNESFDKILVDAPCSGFGVIRR 337
>gi|257882565|ref|ZP_05662218.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,231,502]
gi|424797357|ref|ZP_18222955.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium S447]
gi|424952100|ref|ZP_18367138.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium R496]
gi|424957014|ref|ZP_18371766.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium R446]
gi|424967575|ref|ZP_18381268.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium P1140]
gi|424995169|ref|ZP_18407066.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV168]
gi|424999160|ref|ZP_18410800.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV165]
gi|425001027|ref|ZP_18412563.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV161]
gi|425004970|ref|ZP_18416253.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV102]
gi|425011289|ref|ZP_18422198.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E422]
gi|425017691|ref|ZP_18428187.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium C621]
gi|425033033|ref|ZP_18438036.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 515]
gi|431777739|ref|ZP_19565990.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2560]
gi|431783163|ref|ZP_19571285.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E6012]
gi|431784119|ref|ZP_19572164.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E6045]
gi|257818223|gb|EEV45551.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,231,502]
gi|402921204|gb|EJX41663.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium S447]
gi|402927707|gb|EJX47642.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium R496]
gi|402944646|gb|EJX63044.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium R446]
gi|402954065|gb|EJX71720.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium P1140]
gi|402978068|gb|EJX93833.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV168]
gi|402980118|gb|EJX95747.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV165]
gi|402987639|gb|EJY02686.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV161]
gi|402988011|gb|EJY03040.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV102]
gi|402997454|gb|EJY11775.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E422]
gi|403003899|gb|EJY17748.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium C621]
gi|403011440|gb|EJY24750.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 515]
gi|430639032|gb|ELB74923.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2560]
gi|430645836|gb|ELB81338.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E6012]
gi|430650160|gb|ELB85514.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E6045]
Length = 452
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 109/366 (29%), Positives = 185/366 (50%), Gaps = 33/366 (9%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L R+ GGA+++LL NEM + +L+ +D+ L T+++
Sbjct: 13 RYMALLTLERVNKGGAYSNLLL--------NEM--------IKQSELNQKDVGLFTELIY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI +R L+ + L K +LL + Y++ LD +P +A+++E V +A
Sbjct: 57 GTISHQRLLEFYVAPLIAKAKKVDDWVKMLL---YLSVYQLEFLDKVPAHAILNEAVEIA 113
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
KV PG G VNG+LR + P L+G R L+ S P+WM +R
Sbjct: 114 KVKGNPGTGKFVNGVLR------NYQRQGAPDLQGIADPIER-LSVKISLPLWMTKRLVD 166
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKT 299
+G EE KL + S R ++R+ ++R + L ++ E S I K
Sbjct: 167 QIGYEETEKLGLSLYQPSHASARVDTRR-LSRDQAITVLQEEEITAEKSQVSPYGIVAKK 225
Query: 300 GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL--SG 357
G ++ + L +G+ +QDES+ LV + +P ++D CAAPGGKT ++AS L S
Sbjct: 226 G--HLASSSLFHDGVMTIQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSC 283
Query: 358 QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSG 416
G V A+D+++ +++++ + A V+S + D R + + D++L+DAPCSG
Sbjct: 284 GGEVVALDVHEHKVKLIEDNAARLGVSSAVYAQKMDAREVSKQFEAEQFDRILVDAPCSG 343
Query: 417 LGVLSK 422
LG+L +
Sbjct: 344 LGLLRR 349
>gi|410584639|ref|ZP_11321741.1| ribosomal RNA small subunit methyltransferase RsmB [Thermaerobacter
subterraneus DSM 13965]
gi|410504225|gb|EKP93737.1| ribosomal RNA small subunit methyltransferase RsmB [Thermaerobacter
subterraneus DSM 13965]
Length = 488
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 105/331 (31%), Positives = 162/331 (48%), Gaps = 12/331 (3%)
Query: 95 YVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQ 152
YV++ L L R+ L T++ G R + LD + + ++P +
Sbjct: 58 YVDQALARLLEGSGLPARERALATELAYGVARRQGSLDWALARWAR--RPPERLDPPVRV 115
Query: 153 ILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPK 211
LR+G Y++ LD +P +A V E+V L + A VN +LR+ + P
Sbjct: 116 ALRLGAYQLWHLDRIPDHAAVAESVELVRRHGPGYAAGFVNAVLRRAA----RHGFPHEA 171
Query: 212 LEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR 271
+ G LA +HP W+VRRW + LG EE +L+ NN P S R N + R
Sbjct: 172 VPGAAEDLETHLALTLAHPRWLVRRWLERLGPEETRRLLEANNRIPPLSARVNMLRADPR 231
Query: 272 ADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
+ L L V E L E +R+ G+ + + ++G QDES+ L V V+DP
Sbjct: 232 S-LAAALAAQGVAVEPGRFLPEALRLGHGV-SPAELEAFQQGALTWQDESSMLAVHVLDP 289
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
+PGQ ++D AAPGGK+ +MA + +G V A D++ GRL + A+ + SV +
Sbjct: 290 RPGQLVLDVAAAPGGKSTHMAERMGDRGRVVACDVDPGRLEKVRAAARRLGLRSV-EPLA 348
Query: 392 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
D R + + D+VL D PCSGLGV+++
Sbjct: 349 LDGRLLPERFAGQADRVLADVPCSGLGVIAR 379
>gi|257886037|ref|ZP_05665690.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,231,501]
gi|430854012|ref|ZP_19471734.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1258]
gi|257821893|gb|EEV49023.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,231,501]
gi|430539689|gb|ELA79929.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1258]
Length = 452
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 108/366 (29%), Positives = 187/366 (51%), Gaps = 33/366 (9%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L R+ GGA+++LL NEM + +L+ +D+ L T+++
Sbjct: 13 RYMALLTLERVNKGGAYSNLLL--------NEM--------IKQSELNQKDVGLFTELIY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI +R L+ + L K ++ + +L + Y++ LD +P +A+++E V +A
Sbjct: 57 GTISHQRLLEFYVAPLIAKAK---KVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIA 113
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
KV PG G VNG+LR + P L+G R L+ S P+WM +R
Sbjct: 114 KVKGNPGTGKFVNGVLR------NYQRQGAPDLQGIADTIER-LSVKISLPLWMTKRLVD 166
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKT 299
+G EE KL + S R ++R+ ++R + L ++ E S I K
Sbjct: 167 QIGYEETEKLGLSLYQPSHASARVDTRR-LSRDQAITVLQEEEITAEKSQVSPYGIVAKK 225
Query: 300 GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL--SG 357
G ++ + L +G+ +QDES+ LV + +P ++D CAAPGGKT ++AS L S
Sbjct: 226 G--HLASSSLFHDGVMTIQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSC 283
Query: 358 QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSG 416
G V A+D+++ +++++ + A V+S + D R + + D++L+DAPCSG
Sbjct: 284 GGEVVALDVHEHKVKLIEDNAARLGVSSTVYAQKMDAREVSKQFEAEQFDRILVDAPCSG 343
Query: 417 LGVLSK 422
LG+L +
Sbjct: 344 LGLLRR 349
>gi|403253553|ref|ZP_10919854.1| 16S rRNA methyltransferase B [Thermotoga sp. EMP]
gi|402811087|gb|EJX25575.1| 16S rRNA methyltransferase B [Thermotoga sp. EMP]
Length = 431
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 100/317 (31%), Positives = 165/317 (52%), Gaps = 34/317 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LDDRD R ++V G +R LD I L + + P + LR+G Y+++ ++
Sbjct: 34 LDDRDRRFFKELVWGVVRKEELLDWYINQLLKKK----DIPPAVRVALRMGAYQLLFMNS 89
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P YA V E V+L K LVN +LR+L ++P PK L
Sbjct: 90 VPDYAAVSETVKLVK---NENFKKLVNAVLRRL------RTVPEPK----------ELHL 130
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANS----RKGVTRADLVMQLNLL 281
+YSHP W+V W +L +E +++M WN LR NS ++ VT+ ++ +
Sbjct: 131 VYSHPEWIVNYWRSFLPEEAVLRIMKWNQEPLPVMLRVNSLAATKEEVTK--ILAEEGTE 188
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
VP + + I K G+ + + ++ +GL +VQ ES+ LV ++ +PG ++D C
Sbjct: 189 AVPGKHAPF--SLIVRKLGVP-MNDSRVINDGLASVQGESSQLVPFFMELKPGLRVLDTC 245
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401
AAPGGKT +A + QG + A+DI++ +++++ + AK +++S I T AD +
Sbjct: 246 AAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS-IETKIADAERLTEYV 304
Query: 402 TVKCDKVLLDAPCSGLG 418
D+VL+DAPC+ LG
Sbjct: 305 QDTFDRVLVDAPCTSLG 321
>gi|289435165|ref|YP_003465037.1| sun protein [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|289171409|emb|CBH27953.1| sun protein [Listeria seeligeri serovar 1/2b str. SLCC3954]
Length = 446
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 109/353 (30%), Positives = 185/353 (52%), Gaps = 38/353 (10%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGFYEIVKLD-MP 167
D L+T++V GT + + LD+ + F + EP + +LR+ Y++ LD +P
Sbjct: 42 DKGLLTELVYGTTQRKITLDYYLA-------PFLNKEPDNWVKNLLRMSVYQLTFLDKVP 94
Query: 168 PYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIY 227
+A+++E +AK G VNG+LR V+ K S+ L + D + A+ T
Sbjct: 95 EHAILNEAGDIAKDLGHQGVTKFVNGVLRN-VIRKGVPSIDLIQ----DPVEKIAVET-- 147
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHEL 287
S PVW+ +RW K G E+ ++ + P S+R N + + L+ +LN +
Sbjct: 148 SLPVWLAKRWAKQYGNEQLREIGMAFLVAPHQSIRVNQTE-IRTEQLIKELNDQGITVTR 206
Query: 288 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 347
+ +DE + V+ G +V + K+G C++QDES+ L + + +++D CAAPGGK
Sbjct: 207 NEFIDEALIVEKG--SVAETKAYKDGKCSIQDESSMLATYALQLEDNLTVLDACAAPGGK 264
Query: 348 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADNSTV 403
T ++A + G G+V+A+DI++ + ++++ AK Q+ + IRT H D RT FA +
Sbjct: 265 TTHIAEKMHGTGMVHALDIHEKKTKLIDHAAKRLQLLN-IRTAHLDARTANTMFAPET-- 321
Query: 404 KCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
D++L+DAPCSG GVL R ++Y KT + L E + +L
Sbjct: 322 -FDRILVDAPCSGFGVL----------RRKPDIKYAKTEKDIHKLAEIQLAIL 363
>gi|422416342|ref|ZP_16493299.1| ribosomal RNA small subunit methyltransferase B [Listeria innocua
FSL J1-023]
gi|313623277|gb|EFR93521.1| ribosomal RNA small subunit methyltransferase B [Listeria innocua
FSL J1-023]
Length = 446
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 110/360 (30%), Positives = 188/360 (52%), Gaps = 32/360 (8%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGF 158
+ + L+ D L+T++V GT + + LD+ + F + EP + +LR+
Sbjct: 32 ALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLA-------PFLNKEPDNWVKNLLRMSV 84
Query: 159 YEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDR 217
Y++ LD +P +A+++E +AK G VNG+LR V+ K S+ L K D
Sbjct: 85 YQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRN-VIRKGVPSIDLIK----DP 139
Query: 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQ 277
Q A+ T S P W+ RRW G E+ ++ + P S+R N + + L+ +
Sbjct: 140 VQKIAVET--SLPEWLARRWADQYGLEKLREIGLAFLVAPHQSIRVNQTE-IRAEQLIKE 196
Query: 278 LNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 337
LN + + +DE + V+ G +V + K+G C++QDES+ LV + + ++
Sbjct: 197 LNDQGITVTRNEFIDEALLVEKG--SVAETKAYKDGKCSIQDESSMLVAYALQLEDNLTV 254
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397
+D CAAPGGKT ++A + G G+V+A+DI++ + +++++ AK Q+ + IRT H D RT
Sbjct: 255 LDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQAAKRLQLLN-IRTAHLDARTA 313
Query: 398 ADNSTVKC-DKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
+ + D++L+DAPCSG GVL R ++Y KT + L E + +L
Sbjct: 314 STMFEPETFDRILVDAPCSGFGVL----------RRKPDIKYAKTEKDIHKLAEIQLAIL 363
>gi|168182584|ref|ZP_02617248.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum Bf]
gi|182674127|gb|EDT86088.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum Bf]
Length = 442
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 96/318 (30%), Positives = 162/318 (50%), Gaps = 13/318 (4%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L D D L+T+IV GT++++ LD I + + +M+ ++ ILRI Y+I LD
Sbjct: 34 NLKDNDKALITEIVYGTLKYKETLD--IIIQSYLRNPIKTMDKNIINILRITIYQIRYLD 91
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A V+E V ++K + LVNG+LR + N + R +
Sbjct: 92 KIPSFAAVNEAVEMSK-KISIKYSKLVNGVLRNYIRTYKNKKFY------DHRNNLEKFS 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
+YS+P W+++ + G E A K++ N P+ ++R N+ K + + +L
Sbjct: 145 FMYSYPKWLIKMFISQYGIEIAEKILKGLNERPNITVRVNNLK-IDYDEAFEKLGEYGYN 203
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
E E I++ G +N+ + L EG VQDESA LV ++ ++D C+AP
Sbjct: 204 IEEGYICPEAIQIIKG-KNIEKNPLFIEGNITVQDESAMLVAPSMELDEESIVLDLCSAP 262
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404
GGKT +++ ++ + VYA DI++ +L ++ AK + + I T D F K
Sbjct: 263 GGKTTHISEIMNNKSKVYAYDIHQNKLSLIESNAKRLGIKN-IETDVGDAAVFNKKLKEK 321
Query: 405 CDKVLLDAPCSGLGVLSK 422
+VL+D PCSGLG++ K
Sbjct: 322 AHRVLMDVPCSGLGIIRK 339
>gi|294500982|ref|YP_003564682.1| ribosomal RNA small subunit methyltransferase B [Bacillus
megaterium QM B1551]
gi|294350919|gb|ADE71248.1| ribosomal RNA small subunit methyltransferase B [Bacillus
megaterium QM B1551]
Length = 446
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 100/348 (28%), Positives = 175/348 (50%), Gaps = 24/348 (6%)
Query: 110 RDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPP 168
+D L+T+IV GTI+ R LD+ + + K ++P + +LR+ Y++V LD +P
Sbjct: 40 KDAGLLTEIVYGTIQRRDTLDYGLAPFLKNPK---KLQPWVRVLLRLSLYQMVYLDRVPD 96
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
A++ E V +AK G ++VNG+LR + P LE R LA S
Sbjct: 97 RAILHEAVEIAKKRGHKGIASMVNGVLRNI------QRSGTPSLEEIQNPVER-LAIETS 149
Query: 229 HPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELS 288
HP+W+V+RW + G ++ + + N P ++R NS + T+ ++ L + E
Sbjct: 150 HPLWLVKRWVEQYGLDKTRGICLANLMAPKQTIRVNSAR-FTQNEVKEALEKEGIVVEPG 208
Query: 289 LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKT 348
++E + V+ G N +EG+ VQDES+ LV + + + I+D CAAPGGK+
Sbjct: 209 HFVEEALEVQKG--NAAHTQAFREGMFTVQDESSMLVAHALSAEAEELILDSCAAPGGKS 266
Query: 349 LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKV 408
++A L G V ++DI+ +++++ + A+ + ++ T+ + D++
Sbjct: 267 THIAEQLKNSGKVISLDIHDHKVKLIAQQAERLHLTNIEPTVQDSRKAGEQFDKEMFDRI 326
Query: 409 LLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
L+DAPCSG GV+ R L+Y KT ++ L + +L
Sbjct: 327 LVDAPCSGFGVM----------RRKPDLKYTKTEQDVKQLARIQQDIL 364
>gi|237795946|ref|YP_002863498.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum Ba4 str. 657]
gi|229261794|gb|ACQ52827.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum Ba4 str. 657]
Length = 442
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 96/318 (30%), Positives = 162/318 (50%), Gaps = 13/318 (4%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L D D L+T+IV GT++++ LD I + + +M+ ++ ILRI Y+I LD
Sbjct: 34 NLKDNDKALITEIVYGTLKYKETLD--IIIQSYLRNPIKTMDKNIINILRITIYQIRYLD 91
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A V+E V ++K + LVNG+LR + N + R +
Sbjct: 92 KIPSFAAVNEAVEMSK-KISIKYSKLVNGVLRNYIRTYKNKKFY------DHRNNLEKFS 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
+YS+P W+++ + G E A K++ N P+ ++R N+ K + + +L
Sbjct: 145 FMYSYPKWLIKMFISQYGIEIAEKILKGLNERPNITVRVNNLK-IDYDEAFEKLGEYGYN 203
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
E E I++ G +N+ + L EG VQDESA LV ++ ++D C+AP
Sbjct: 204 IEEGYICPEAIQIIKG-KNIEKNPLFIEGNITVQDESAMLVAPSMELDEESIVLDLCSAP 262
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404
GGKT +++ ++ + VYA DI++ +L ++ AK + + I T D F K
Sbjct: 263 GGKTTHISEIMNNKSKVYAYDIHQNKLSLIESNAKRLGIKN-IETDVGDAAVFNKKLKEK 321
Query: 405 CDKVLLDAPCSGLGVLSK 422
+VL+D PCSGLG++ K
Sbjct: 322 AHRVLMDVPCSGLGIIRK 339
>gi|422422526|ref|ZP_16499479.1| ribosomal RNA small subunit methyltransferase B [Listeria seeligeri
FSL S4-171]
gi|313637331|gb|EFS02816.1| ribosomal RNA small subunit methyltransferase B [Listeria seeligeri
FSL S4-171]
Length = 446
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 108/360 (30%), Positives = 188/360 (52%), Gaps = 32/360 (8%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGF 158
+ + L+ D L+T++V GT + + LD+ + F + EP + +LR+
Sbjct: 32 ALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLA-------PFLNKEPDNWVKNLLRMSV 84
Query: 159 YEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDR 217
Y++ LD +P +A+++E +AK G VNG+LR V+ K S+ L + D
Sbjct: 85 YQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRN-VIRKGVPSIDLIQ----DP 139
Query: 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQ 277
+ A+ T S PVW+ +RW K G E+ ++ + P S+R N + + L+ +
Sbjct: 140 VEKIAVET--SLPVWLAKRWAKQYGNEQLREIGMAFLVAPHQSIRVNQTE-IRTEQLIKE 196
Query: 278 LNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 337
LN + + +DE + V+ G +V + K+G C++QDES+ L + + ++
Sbjct: 197 LNDQGITVTRNEFIDEALIVEKG--SVAETKAYKDGKCSIQDESSMLATYALQLEDNLTV 254
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397
+D CAAPGGKT ++A + G G+V+A+DI++ + ++++ AK Q+ + IRT H D RT
Sbjct: 255 LDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDHAAKRLQLLN-IRTAHLDARTA 313
Query: 398 ADNSTVKC-DKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
+ + D++L+DAPCSG GVL R ++Y KT + L E + +L
Sbjct: 314 STMFEPETFDRILVDAPCSGFGVL----------RRKPDIKYAKTEKDIHKLAEIQLAIL 363
>gi|224369793|ref|YP_002603957.1| protein RsmB [Desulfobacterium autotrophicum HRM2]
gi|223692510|gb|ACN15793.1| RsmB [Desulfobacterium autotrophicum HRM2]
Length = 455
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 102/324 (31%), Positives = 157/324 (48%), Gaps = 19/324 (5%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ L RD L I+ GT+RW+ +LD LI ++ +EP + LR Y+ V +
Sbjct: 46 ESLAHRDRALANAIIYGTLRWKEHLDWLITPFS--KRPLDQIEPAICYTLRTALYQTVFM 103
Query: 165 DMPPYAVVDENVRLAKVAL-RPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
D P + A L GA VN +LRK + ++P K + A +
Sbjct: 104 DKIPVSAAVNTAVNAAKKLSNTGAAGFVNAVLRKATTRYMDVAMPDSK-----KDPALFI 158
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
+ S P+W+ RRW + G + +I L+ N+ P +LRAN+ + RA L L
Sbjct: 159 SKSQSIPLWLSRRWIRRFGLDASIALLDAINTIPPITLRANTLR-TDRASLATALE---- 213
Query: 284 PHELSL----HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 339
PH ++ H + + V + KEGL VQDE+ +V ++ PQPG+ I+D
Sbjct: 214 PHVETIVPTFHTPDGLSVTRPRTPLHLTTAFKEGLFQVQDEATQIVTTLLAPQPGERILD 273
Query: 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRIL-NETAKLHQVNSVIRTIHADLRTFA 398
CA GGKT +M ++ QG + A D++ +L +L NE +L N + + A L
Sbjct: 274 ACAGLGGKTGHMGQIMNNQGKIEAWDLDARKLAVLGNEMKRLGITNVTTKQMDA-LDIDP 332
Query: 399 DNSTVKCDKVLLDAPCSGLGVLSK 422
D+VL+DAPC+GLGVL +
Sbjct: 333 AECNTPFDRVLVDAPCTGLGVLRR 356
>gi|69245428|ref|ZP_00603423.1| Fmu, rRNA SAM-dependent methyltransferase [Enterococcus faecium DO]
gi|257879839|ref|ZP_05659492.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,230,933]
gi|257891680|ref|ZP_05671333.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,231,410]
gi|257894155|ref|ZP_05673808.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,231,408]
gi|260559512|ref|ZP_05831693.1| fmu [Enterococcus faecium C68]
gi|293563686|ref|ZP_06678127.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1162]
gi|293570098|ref|ZP_06681178.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1071]
gi|314938230|ref|ZP_07845530.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0133a04]
gi|314943127|ref|ZP_07849925.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0133C]
gi|314949324|ref|ZP_07852666.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0082]
gi|314952258|ref|ZP_07855272.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0133A]
gi|314992114|ref|ZP_07857564.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0133B]
gi|314996296|ref|ZP_07861352.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0133a01]
gi|383329934|ref|YP_005355818.1| Ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium Aus0004]
gi|389869750|ref|YP_006377173.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium DO]
gi|406579473|ref|ZP_11054704.1| Ribosomal RNA small subunit methyltransferase B [Enterococcus sp.
GMD4E]
gi|406581818|ref|ZP_11056953.1| Ribosomal RNA small subunit methyltransferase B [Enterococcus sp.
GMD3E]
gi|406584220|ref|ZP_11059255.1| Ribosomal RNA small subunit methyltransferase B [Enterococcus sp.
GMD2E]
gi|406589674|ref|ZP_11064102.1| Ribosomal RNA small subunit methyltransferase B [Enterococcus sp.
GMD1E]
gi|410937646|ref|ZP_11369505.1| ribosomal RNA small subunit methyltransferase B [Enterococcus sp.
GMD5E]
gi|415892937|ref|ZP_11550036.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E4453]
gi|416138831|ref|ZP_11599108.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E4452]
gi|424790097|ref|ZP_18216690.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium V689]
gi|424849933|ref|ZP_18274360.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium R501]
gi|424859988|ref|ZP_18283963.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium R499]
gi|424898958|ref|ZP_18322505.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium R497]
gi|424953483|ref|ZP_18368441.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium R494]
gi|424960830|ref|ZP_18375311.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium P1986]
gi|424965095|ref|ZP_18379122.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium P1190]
gi|424970946|ref|ZP_18384420.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium P1139]
gi|424974729|ref|ZP_18387946.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium P1137]
gi|424977459|ref|ZP_18390470.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium P1123]
gi|424979758|ref|ZP_18392592.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV99]
gi|424985891|ref|ZP_18398348.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV69]
gi|424986853|ref|ZP_18399255.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV38]
gi|424992530|ref|ZP_18404587.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV26]
gi|425008269|ref|ZP_18419362.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV1]
gi|425013389|ref|ZP_18424121.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E417]
gi|425020447|ref|ZP_18430752.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium C497]
gi|425030251|ref|ZP_18435445.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium C1904]
gi|425036355|ref|ZP_18441118.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 514]
gi|425039086|ref|ZP_18443651.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 513]
gi|425041968|ref|ZP_18446340.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 511]
gi|425046818|ref|ZP_18450806.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 510]
gi|425048047|ref|ZP_18451972.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 509]
gi|425053657|ref|ZP_18457187.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 506]
gi|425061726|ref|ZP_18464934.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 503]
gi|427397665|ref|ZP_18890147.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
durans FB129-CNAB-4]
gi|430832554|ref|ZP_19450597.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0333]
gi|430845349|ref|ZP_19463243.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1050]
gi|430847142|ref|ZP_19464989.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1133]
gi|430856282|ref|ZP_19473980.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1392]
gi|430861041|ref|ZP_19478633.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1573]
gi|430964174|ref|ZP_19487622.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1576]
gi|431014797|ref|ZP_19490339.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1578]
gi|431239339|ref|ZP_19503642.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1622]
gi|431265361|ref|ZP_19506063.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1623]
gi|431312202|ref|ZP_19508852.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1626]
gi|431560990|ref|ZP_19519622.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1731]
gi|431747439|ref|ZP_19536233.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2134]
gi|431749938|ref|ZP_19538668.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2297]
gi|431756190|ref|ZP_19544828.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2883]
gi|431768618|ref|ZP_19557053.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1321]
gi|431771744|ref|ZP_19560121.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1644]
gi|431774675|ref|ZP_19562980.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2369]
gi|431780435|ref|ZP_19568614.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E4389]
gi|447913820|ref|YP_007395232.1| Ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium NRRL B-2354]
gi|68195810|gb|EAN10246.1| Fmu, rRNA SAM-dependent methyltransferase [Enterococcus faecium DO]
gi|257814067|gb|EEV42825.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,230,933]
gi|257828040|gb|EEV54666.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,231,410]
gi|257830534|gb|EEV57141.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,231,408]
gi|260074611|gb|EEW62932.1| fmu [Enterococcus faecium C68]
gi|291587470|gb|EFF19354.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1071]
gi|291604370|gb|EFF33863.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1162]
gi|313589540|gb|EFR68385.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0133a01]
gi|313593328|gb|EFR72173.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0133B]
gi|313595600|gb|EFR74445.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0133A]
gi|313598135|gb|EFR76980.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0133C]
gi|313642426|gb|EFS07006.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0133a04]
gi|313644273|gb|EFS08853.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0082]
gi|364090928|gb|EHM33455.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E4452]
gi|364092975|gb|EHM35290.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E4453]
gi|378939628|gb|AFC64700.1| Ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium Aus0004]
gi|388534999|gb|AFK60191.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium DO]
gi|402916518|gb|EJX37384.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium R501]
gi|402921241|gb|EJX41699.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium V689]
gi|402926066|gb|EJX46134.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium R499]
gi|402931982|gb|EJX51528.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium R497]
gi|402938875|gb|EJX57841.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium R494]
gi|402944975|gb|EJX63354.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium P1190]
gi|402945767|gb|EJX64098.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium P1986]
gi|402955686|gb|EJX73197.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium P1137]
gi|402960439|gb|EJX77583.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium P1139]
gi|402964974|gb|EJX81722.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV69]
gi|402965790|gb|EJX82478.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium P1123]
gi|402968200|gb|EJX84694.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV99]
gi|402973075|gb|EJX89224.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV26]
gi|402975682|gb|EJX91622.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV38]
gi|402993008|gb|EJY07659.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium ERV1]
gi|403001090|gb|EJY15165.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E417]
gi|403003830|gb|EJY17685.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium C1904]
gi|403009253|gb|EJY22712.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium C497]
gi|403014990|gb|EJY27938.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 514]
gi|403017443|gb|EJY30190.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 513]
gi|403023155|gb|EJY35441.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 510]
gi|403024990|gb|EJY37102.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 511]
gi|403029317|gb|EJY41078.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 506]
gi|403031773|gb|EJY43363.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 509]
gi|403040652|gb|EJY51714.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 503]
gi|404455509|gb|EKA02356.1| Ribosomal RNA small subunit methyltransferase B [Enterococcus sp.
GMD4E]
gi|404459006|gb|EKA05379.1| Ribosomal RNA small subunit methyltransferase B [Enterococcus sp.
GMD3E]
gi|404464410|gb|EKA09951.1| Ribosomal RNA small subunit methyltransferase B [Enterococcus sp.
GMD2E]
gi|404470468|gb|EKA15100.1| Ribosomal RNA small subunit methyltransferase B [Enterococcus sp.
GMD1E]
gi|410733779|gb|EKQ75701.1| ribosomal RNA small subunit methyltransferase B [Enterococcus sp.
GMD5E]
gi|425721976|gb|EKU84876.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
durans FB129-CNAB-4]
gi|430479840|gb|ELA57050.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0333]
gi|430495754|gb|ELA71890.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1050]
gi|430537815|gb|ELA78130.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1133]
gi|430545066|gb|ELA85064.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1392]
gi|430550630|gb|ELA90413.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1573]
gi|430555235|gb|ELA94779.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1576]
gi|430559621|gb|ELA98969.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1578]
gi|430571946|gb|ELB10818.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1622]
gi|430576196|gb|ELB14865.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1623]
gi|430579151|gb|ELB17687.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1626]
gi|430589831|gb|ELB27931.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1731]
gi|430606266|gb|ELB43624.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2134]
gi|430610889|gb|ELB48019.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2297]
gi|430615645|gb|ELB52589.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2883]
gi|430629037|gb|ELB65459.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1321]
gi|430632734|gb|ELB68935.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1644]
gi|430633560|gb|ELB69715.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2369]
gi|430639847|gb|ELB75702.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E4389]
gi|445189529|gb|AGE31171.1| Ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium NRRL B-2354]
Length = 452
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 108/366 (29%), Positives = 187/366 (51%), Gaps = 33/366 (9%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L R+ GGA+++LL NEM + +L+ +D+ L T+++
Sbjct: 13 RYMALLTLERVNKGGAYSNLLL--------NEM--------IKQSELNQKDVGLFTELIY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI +R L+ + L K ++ + +L + Y++ LD +P +A+++E V +A
Sbjct: 57 GTISHQRLLEFYVAPLIAKAK---KVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIA 113
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
KV PG G VNG+LR + P L+G R L+ S P+WM +R
Sbjct: 114 KVKGNPGTGKFVNGVLR------NYQRQGAPDLQGIADPIER-LSVKISLPLWMTKRLVD 166
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKT 299
+G EE KL + S R ++R+ ++R + L ++ E S I K
Sbjct: 167 QIGYEETEKLGLSLYQPSHASARVDTRR-LSRDQAITVLQEEEITAEKSQVSPYGIVAKK 225
Query: 300 GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL--SG 357
G ++ + L +G+ +QDES+ LV + +P ++D CAAPGGKT ++AS L S
Sbjct: 226 G--HLASSSLFHDGVMTIQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSC 283
Query: 358 QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSG 416
G V A+D+++ +++++ + A V+S + D R + + D++L+DAPCSG
Sbjct: 284 GGEVVALDVHEHKVKLIEDNAARLGVSSAVYAQKMDAREVSKQFEAEQFDRILVDAPCSG 343
Query: 417 LGVLSK 422
LG+L +
Sbjct: 344 LGLLRR 349
>gi|430821474|ref|ZP_19440082.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0045]
gi|430827179|ref|ZP_19445343.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0164]
gi|430906578|ref|ZP_19485013.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1575]
gi|431766092|ref|ZP_19554588.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E4215]
gi|430438427|gb|ELA48858.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0045]
gi|430444359|gb|ELA54214.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0164]
gi|430554536|gb|ELA94138.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1575]
gi|430627162|gb|ELB63679.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E4215]
Length = 452
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 108/366 (29%), Positives = 187/366 (51%), Gaps = 33/366 (9%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L R+ GGA+++LL NEM + +L+ +D+ L T+++
Sbjct: 13 RYMALLTLERVNKGGAYSNLLL--------NEM--------IKQSELNQKDVGLFTELIY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI +R L+ + L K ++ + +L + Y++ LD +P +A+++E V +A
Sbjct: 57 GTISHQRLLEFYVAPLIAKAK---KVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIA 113
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
KV PG G VNG+LR + P L+G R L+ S P+WM +R
Sbjct: 114 KVKGNPGTGKFVNGVLR------NYQRQGAPDLQGIADPIER-LSVKISLPLWMTKRLVD 166
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKT 299
+G EE KL + S R ++R+ ++R + L ++ E S I K
Sbjct: 167 QIGYEETEKLGLSLYQPSHASARVDTRR-LSRDQAITVLQEEEITAEKSQVSPYGIVAKK 225
Query: 300 GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL--SG 357
G ++ + L +G+ +QDES+ LV + +P ++D CAAPGGKT ++AS L S
Sbjct: 226 G--HLASSSLFHDGVMTIQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSR 283
Query: 358 QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSG 416
G V A+D+++ +++++ + A V+S + D R + + D++L+DAPCSG
Sbjct: 284 GGEVVALDVHEHKVKLIEDNAARLGVSSAVYAQKMDAREVSKQFEAEQFDRILVDAPCSG 343
Query: 417 LGVLSK 422
LG+L +
Sbjct: 344 LGLLRR 349
>gi|169349816|ref|ZP_02866754.1| hypothetical protein CLOSPI_00554 [Clostridium spiroforme DSM 1552]
gi|169293384|gb|EDS75517.1| ribosomal RNA small subunit methyltransferase B [Clostridium
spiroforme DSM 1552]
Length = 481
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 106/342 (30%), Positives = 180/342 (52%), Gaps = 38/342 (11%)
Query: 91 NEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP 148
NE Y+ TL + L D LVT IV GT++ YL++ + ++K S +
Sbjct: 79 NEHSYLNITLNEYLKNSTLSRNDKDLVTRIVYGTVQNMIYLEYQLEPYIKNKKVKSREKM 138
Query: 149 LLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSL 207
+LL + Y+++ LD +P YA++DE V+LAK AG VN ILR L++
Sbjct: 139 ILL----MSLYQLIFLDKVPEYAIIDEAVKLAKKK-NFYAGKFVNAILRNY--LRNGKR- 190
Query: 208 PLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK 267
K+E D + ++ T SHP+W+V+ +TK E A K+ + +N+ P + R N+ K
Sbjct: 191 ---KIETKDELEKLSIET--SHPLWLVKMFTKQYDYETAKKICIHDNTPPGRTARVNTLK 245
Query: 268 GVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVA 327
T + +++ + +L D + N+ ++ KEGL +QDES+ LV
Sbjct: 246 --TNKNTLLKEGCFE---NGNLAPDALLY---NAGNIAESTYFKEGLVTIQDESSQLVAP 297
Query: 328 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVI 387
++ P ++D C APG KT ++A+ ++ +G + A D+ + +++++ E K +++V
Sbjct: 298 LLSPSEDDLVLDMCCAPGSKTTHLAALMNNKGKIIACDLFEHKIKLVKENLKRLNISNV- 356
Query: 388 RTIHADLRTFADNSTVK-------CDKVLLDAPCSGLGVLSK 422
+HA D +T+K DK+LLDAPCSGLGV+ +
Sbjct: 357 -ELHA-----IDATTLKEKYLEGTFDKILLDAPCSGLGVMKR 392
>gi|295706330|ref|YP_003599405.1| ribosomal RNA small subunit methyltransferase B [Bacillus
megaterium DSM 319]
gi|294803989|gb|ADF41055.1| ribosomal RNA small subunit methyltransferase B [Bacillus
megaterium DSM 319]
Length = 446
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 178/356 (50%), Gaps = 24/356 (6%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ + + +D L+T+IV GTI+ R LD+ + + K ++P + +LR+ Y++
Sbjct: 32 IQKRGIQGKDAGLLTEIVYGTIQRRDTLDYGLAPFLKNPK---KLQPWVRVLLRLSLYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
V LD +P A++ E V +AK G ++VNG+LR + P LE
Sbjct: 89 VYLDRVPDRAILHEAVEIAKKRGHKGIASMVNGVLRNI------QRSGTPSLEEIQNPVE 142
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R LA SHP+W+V+RW + G ++ + + N P ++R NS + T+ ++ L
Sbjct: 143 R-LAIETSHPLWLVKRWVEQYGLDKTRGICLANLMAPKQTIRVNSAR-FTQNEVKEALEK 200
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ E ++E + V+ G N +EG+ VQDES+ LV + + + I+D
Sbjct: 201 EGIVVEPGHFVEEALEVQKG--NAAHTQAFREGMFTVQDESSMLVAHALGAEAEELILDS 258
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
CAAPGGK+ ++A L G V ++DI+ +++++ + A+ + ++ T+ +
Sbjct: 259 CAAPGGKSTHIAEQLRNSGKVISLDIHDHKVKLIAQQAERLHLTNIEPTVQDSRKAGEQF 318
Query: 401 STVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
D++L+DAPCSG GV+ R L+Y KT ++ L + +L
Sbjct: 319 DKEMFDRILVDAPCSGFGVM----------RRKPDLKYTKTEQDIKQLARIQQDIL 364
>gi|293553676|ref|ZP_06674300.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1039]
gi|291602251|gb|EFF32479.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1039]
Length = 452
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 108/366 (29%), Positives = 187/366 (51%), Gaps = 33/366 (9%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L R+ GGA+++LL NEM + +L+ +D+ L T+++
Sbjct: 13 RYMALLTLERVNKGGAYSNLLL--------NEM--------IKQSELNQKDVGLFTELIY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI +R L+ + L K ++ + +L + Y++ LD +P +A+++E V +A
Sbjct: 57 GTISHQRLLEFYVAPLIAKAK---KVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIA 113
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
KV PG G VNG+LR + P L+G R L+ S P+WM +R
Sbjct: 114 KVKGNPGTGKFVNGVLR------NYQRQGAPDLQGIADPIER-LSVKISLPLWMTKRLVD 166
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKT 299
+G EE KL + S R ++R+ ++R + L ++ E S I K
Sbjct: 167 QIGYEETEKLGLSLYQPSHASARVDTRR-LSRDQAITVLQEEEITAEKSQVSPYGIVAKK 225
Query: 300 GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL--SG 357
G ++ + L +G+ +QDES+ LV + +P ++D CAAPGGKT ++AS L S
Sbjct: 226 G--HLASSSLFHDGVMTIQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSC 283
Query: 358 QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSG 416
G V A+D+++ +++++ + A V+S + D R + + D++L+DAPCSG
Sbjct: 284 GGEVVALDVHEHKVKLIEDNAARLGVSSAVYAQKMDAREVSKQFEAEQFDRILVDAPCSG 343
Query: 417 LGVLSK 422
LG+L +
Sbjct: 344 LGLLRR 349
>gi|153938943|ref|YP_001391803.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum F str. Langeland]
gi|152934839|gb|ABS40337.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum F str. Langeland]
Length = 442
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 162/318 (50%), Gaps = 13/318 (4%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L D D L+T+IV GT++++ LD I + + +M+ ++ ILRI Y+I LD
Sbjct: 34 NLKDNDKALITEIVYGTLKYKETLD--IIIQSYLRNPIKTMDKNIVNILRITIYQIRYLD 91
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A V+E V ++K + LVNG+LR + N + R +
Sbjct: 92 KIPSFAAVNEAVEMSK-KISIKYSKLVNGVLRNYIRTYKNKKFY------DHRNNLEKFS 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
+YS+P W+++ + G E A K++ N P+ ++R N+ K + + +L
Sbjct: 145 FMYSYPKWLIKMFISQYGIEMAEKILKGLNERPNITVRVNNLK-IDYDEAFEKLGEYGYN 203
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
E E I++ G +N+ + L EG VQDESA LV ++ ++D C+AP
Sbjct: 204 IEEGYICPEAIQIIKG-KNIEKNPLFIEGNITVQDESAMLVAPSMELDEESIVLDLCSAP 262
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404
GGKT +++ ++ + VYA D+++ +L ++ AK + + I T D F K
Sbjct: 263 GGKTTHISEIMNNKSKVYAYDVHQNKLSLIESNAKRLGIKN-IETDVGDAAVFNKKLKEK 321
Query: 405 CDKVLLDAPCSGLGVLSK 422
+VL+D PCSGLG++ K
Sbjct: 322 AHRVLMDVPCSGLGIIRK 339
>gi|261206663|ref|ZP_05921361.1| fmu [Enterococcus faecium TC 6]
gi|289565024|ref|ZP_06445478.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium D344SRF]
gi|294614916|ref|ZP_06694807.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1636]
gi|425059192|ref|ZP_18462542.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 504]
gi|430824314|ref|ZP_19442878.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0120]
gi|430829993|ref|ZP_19448062.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0269]
gi|430835061|ref|ZP_19453060.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0679]
gi|430851319|ref|ZP_19469069.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1185]
gi|430867720|ref|ZP_19482618.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1574]
gi|431216453|ref|ZP_19501204.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1620]
gi|431744819|ref|ZP_19533685.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2071]
gi|260079156|gb|EEW66849.1| fmu [Enterococcus faecium TC 6]
gi|289163231|gb|EFD11077.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium D344SRF]
gi|291592202|gb|EFF23820.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1636]
gi|403036257|gb|EJY47614.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium 504]
gi|430441329|gb|ELA51444.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0120]
gi|430479311|gb|ELA56567.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0269]
gi|430484729|gb|ELA61691.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0679]
gi|430534281|gb|ELA74742.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1185]
gi|430550107|gb|ELA89916.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1574]
gi|430569818|gb|ELB08798.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1620]
gi|430604979|gb|ELB42401.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E2071]
Length = 452
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 108/366 (29%), Positives = 187/366 (51%), Gaps = 33/366 (9%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L R+ GGA+++LL NEM + +L+ +D+ L T+++
Sbjct: 13 RYMALLTLERVNKGGAYSNLLL--------NEM--------IKQSELNQKDVGLFTELIY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI +R L+ + L K ++ + +L + Y++ LD +P +A+++E V +A
Sbjct: 57 GTISHQRLLEFYVAPLIAKAK---KVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIA 113
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
KV PG G VNG+LR + P L+G R L+ S P+WM +R
Sbjct: 114 KVKGNPGTGKFVNGVLR------NYQRQGAPDLQGIADPIER-LSVKISLPLWMTKRLVD 166
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKT 299
+G EE KL + S R ++R+ ++R + L ++ E S I K
Sbjct: 167 QIGYEETEKLGLSLYQPSHASARVDTRR-LSRDQAITVLQEEEITAEKSQVSPYGIVAKK 225
Query: 300 GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL--SG 357
G ++ + L +G+ +QDES+ LV + +P ++D CAAPGGKT ++AS L S
Sbjct: 226 G--HLASSSLFHDGVMTIQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSC 283
Query: 358 QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSG 416
G V A+D+++ +++++ + A V+S + D R + + D++L+DAPCSG
Sbjct: 284 GGEVVALDVHEHKVKLIEDNAARLGVSSAVYAQKMDAREVSKQFEAEQFDRILVDAPCSG 343
Query: 417 LGVLSK 422
LG+L +
Sbjct: 344 LGLLRR 349
>gi|403667672|ref|ZP_10932972.1| ribosomal RNA small subunit methyltransferase B [Kurthia sp. JC8E]
Length = 454
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 169/318 (53%), Gaps = 23/318 (7%)
Query: 110 RDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPP 168
+D L+T++ GT++ + LD + + ++P + +LR+ Y+I LD +P
Sbjct: 47 KDRGLLTELTYGTLQHKLTLDFYL-----EPYVRGKLDPWVRWVLRLALYQIAYLDKIPD 101
Query: 169 YAVVDENVRLAKVALRP-GAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQARALAT 225
+A V+E V +AK R G + VNGILR ++ L+D + P A ++
Sbjct: 102 HAAVNEAVEIAKHRARHRGVSSTVNGILRSILRNGLRDTTEIKDP---------AVRISV 152
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHP W+VRR+ G E +++ NN P ++R N+ K TR L L K
Sbjct: 153 ETSHPEWLVRRYIDGFGVEVTEDMLIENNLPPLQTVRVNATKADTRGGL-EALWEEKFAV 211
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
S ++ E + V G ++ +EG+ +QDES+ + +D QPG + D CAAPG
Sbjct: 212 RRSENIPECLHVLEG--QPARSKAFEEGVITIQDESSMIPAYALDVQPGMRVYDMCAAPG 269
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405
GKT ++A ++ +G V A D++K ++++++E+AK + S+I D R + +
Sbjct: 270 GKTTHIAEKMNNEGTVIATDLHKHKIKLVDESAKRLGL-SIIEAQMLDGRKATEQFEKQS 328
Query: 406 -DKVLLDAPCSGLGVLSK 422
D++L+DAPCSGLGV+ +
Sbjct: 329 FDRILVDAPCSGLGVIRR 346
>gi|15644260|ref|NP_229312.1| sun protein [Thermotoga maritima MSB8]
gi|418045570|ref|ZP_12683665.1| sun protein [Thermotoga maritima MSB8]
gi|4982078|gb|AAD36579.1|AE001799_11 sun protein [Thermotoga maritima MSB8]
gi|351676455|gb|EHA59608.1| sun protein [Thermotoga maritima MSB8]
Length = 431
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 159/313 (50%), Gaps = 26/313 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LDDRD R ++V G +R LD I L + + P + LR+G Y+++ ++
Sbjct: 34 LDDRDRRFFKELVWGVVRKEELLDWYINQLLKKK----DIPPAVRVALRMGAYQLLFMNS 89
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P YA V E V+L K LVN +LR+L ++P PK L
Sbjct: 90 VPDYAAVSETVKLVK---NENFKKLVNAVLRRL------RTVPEPK----------ELHL 130
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
+YSHP W+V W +L +E +++M WN LR NS T+ +++ L
Sbjct: 131 VYSHPEWIVNYWRSFLPEEAVLRIMKWNQEPLPVMLRVNSL-AATKEEVIKILAEEGTEA 189
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
H + V+ + + ++ +GL +VQ ES+ LV ++ +PG ++D CAAPG
Sbjct: 190 VPGKHAPFSLIVRKLGVPMNDSRVINDGLASVQGESSQLVPFFMELRPGLRVLDTCAAPG 249
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405
GKT +A + QG + A+DI++ +++++ + AK +++S I T AD +
Sbjct: 250 GKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS-IETKIADAERLTEYVQDTF 308
Query: 406 DKVLLDAPCSGLG 418
D+VL+DAPC+ LG
Sbjct: 309 DRVLVDAPCTSLG 321
>gi|299821751|ref|ZP_07053639.1| ribosomal RNA small subunit methyltransferase B [Listeria grayi DSM
20601]
gi|299817416|gb|EFI84652.1| ribosomal RNA small subunit methyltransferase B [Listeria grayi DSM
20601]
Length = 445
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 106/354 (29%), Positives = 184/354 (51%), Gaps = 34/354 (9%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGF 158
+ L+ D L+T++V GT++ R LD+ + +TF +P +L++LR+
Sbjct: 32 ALKKTKLEALDRNLLTELVYGTLQRRLTLDYYL-------QTFLKKQPEDWVLELLRMSV 84
Query: 159 YEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDR 217
Y++V LD +P +A++ E +AK G VNG+LR L+ +P + D
Sbjct: 85 YQLVYLDKVPEHAILHEAGEIAKQRSHQGVTKFVNGVLRNLI----RQGIP-AITDIADP 139
Query: 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQ 277
+ A+ T S P+W+ RRW K G + ++ + P ++R N R R +
Sbjct: 140 VEQVAIET--SLPLWLARRWEKQFGLTQLREIGLAFLVPPHQTIRVN-RLEQPREQTAKE 196
Query: 278 LNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 337
L + + S +LDE + V+ G V Q L ++G+ ++QDES+ L + + ++
Sbjct: 197 LGQIDIETTPSPYLDEALIVEKG--TVAQTRLYQKGIISIQDESSMLPAYALQLEEQMTV 254
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHADLRT 396
+D CAAPGGKT ++A ++G G+VYA+DI++ + +++ + A +L +N IRT D R
Sbjct: 255 LDACAAPGGKTTHIAEKMNGTGIVYALDIHEKKTKLIEQAADRLGLMN--IRTKAYDARK 312
Query: 397 FADNSTVKC-DKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLC 449
++ + D++L+DAPCSG GVL + ++Y KT +Q L
Sbjct: 313 ASEVFEPEMFDRILVDAPCSGFGVLRRK----------PDIKYSKTENDIQRLA 356
>gi|312143910|ref|YP_003995356.1| sun protein [Halanaerobium hydrogeniformans]
gi|311904561|gb|ADQ15002.1| sun protein [Halanaerobium hydrogeniformans]
Length = 444
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 104/328 (31%), Positives = 167/328 (50%), Gaps = 39/328 (11%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-M 166
D RD L T+I G IR + YLDH+I + K+ M+ +L LRIG Y+++ LD +
Sbjct: 34 DQRDKNLFTEIFYGVIRNKLYLDHIIKHFSN--KSLEKMDKEVLLGLRIGIYQLLFLDKI 91
Query: 167 PPYAVVDENVRLAKVALR-PGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
P A + E+V K+ L+ GA VNGILR + D S+ +P+ +++ + +
Sbjct: 92 PARAAIYESVEAVKLMLKNKGAAAFVNGILRNVNRKIDQVSI-IPR----EKSPLKHFSI 146
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
YS+P WM++R+ G E+A K++ + G RA+++ + N LK+
Sbjct: 147 KYSYPEWMIKRFIDQYGIEKAEKII---------------KAGNKRAEVIYRHNSLKMSK 191
Query: 286 ELSLH------LDEFIRVKTGLQNVIQAG------LLKEGLCAVQDESAGLVVAVVDPQP 333
+ L LD G N++ A + K+G +Q SAGL +++P+
Sbjct: 192 QEFLRSLKREGLDFKETFVPGFYNLLNANNPVDTEVFKKGGAYIQGTSAGLASLLLEPKE 251
Query: 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD 393
++D AAPGGKT ++A + G + A+DIN RL ++ E + V +V AD
Sbjct: 252 DMDVLDLAAAPGGKTTHLAMLMENTGHIKALDINPTRLNLIKENMQRLGVKNV-SLEKAD 310
Query: 394 LRTFADNSTVKCDKVLLDAPCSGLGVLS 421
+ S K D++L D PCSGLG++S
Sbjct: 311 AAEY--QSEKKYDRILADLPCSGLGLIS 336
>gi|431761102|ref|ZP_19549689.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E3346]
gi|430622476|gb|ELB59197.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E3346]
Length = 452
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 108/366 (29%), Positives = 187/366 (51%), Gaps = 33/366 (9%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L R+ GGA+++LL NEM + +L+ +D+ L T+++
Sbjct: 13 RYMALLTLERVNKGGAYSNLLL--------NEM--------IKQSELNQKDVGLFTELIY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI +R L+ + L K ++ + +L + Y++ LD +P +A+++E V +A
Sbjct: 57 GTISHQRLLEFYVAPLIAKAK---KVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIA 113
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
KV PG G VNG+LR + P L+G R L+ S P+WM +R
Sbjct: 114 KVKGNPGTGKFVNGVLR------NYQRQGAPDLQGIADPIER-LSVKISLPLWMTKRLVD 166
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKT 299
+G EE KL + S R ++R+ ++R + L ++ E S I K
Sbjct: 167 QIGYEETEKLGLSLYHPSHASARVDTRR-LSRDQAITVLQEEEITAEKSQVSPYGIVAKK 225
Query: 300 GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL--SG 357
G ++ + L +G+ +QDES+ LV + +P ++D CAAPGGKT ++AS L S
Sbjct: 226 G--HLASSSLFHDGVMTIQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSC 283
Query: 358 QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSG 416
G V A+D+++ +++++ + A V+S + D R + + D++L+DAPCSG
Sbjct: 284 GGEVVALDVHEHKVKLIEDNAARLGVSSAVYAQKMDAREVSKQFEAEQFDRILVDAPCSG 343
Query: 417 LGVLSK 422
LG+L +
Sbjct: 344 LGLLRR 349
>gi|430837175|ref|ZP_19455150.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0680]
gi|430839961|ref|ZP_19457897.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0688]
gi|430859193|ref|ZP_19476808.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1552]
gi|431387248|ref|ZP_19511611.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1627]
gi|431512488|ref|ZP_19515915.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1634]
gi|431668781|ref|ZP_19524143.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1904]
gi|430487605|gb|ELA64325.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0680]
gi|430490201|gb|ELA66743.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E0688]
gi|430544035|gb|ELA84080.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1552]
gi|430580805|gb|ELB19271.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1627]
gi|430586407|gb|ELB24664.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1634]
gi|430599947|gb|ELB37629.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1904]
Length = 452
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 108/366 (29%), Positives = 187/366 (51%), Gaps = 33/366 (9%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L R+ GGA+++LL NEM + +L+ +D+ L T+++
Sbjct: 13 RYMALLTLERVNKGGAYSNLLL--------NEM--------IKQSELNQKDVGLFTELIY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI +R L+ + L K ++ + +L + Y++ LD +P +A+++E V +A
Sbjct: 57 GTISHQRLLEFYVAPLIAKAK---KVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIA 113
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
KV PG G VNG+LR + P L+G R L+ S P+WM +R
Sbjct: 114 KVKGNPGTGKFVNGVLR------NYQRQGAPDLQGIADPIER-LSFKISLPLWMTKRLVD 166
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKT 299
+G EE KL + S R ++R+ ++R + L ++ E S I K
Sbjct: 167 QIGYEETEKLGLSLYQPSHASARVDTRR-LSRDQAITVLQEEEITAEKSQVSPYGIVAKK 225
Query: 300 GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL--SG 357
G ++ + L +G+ +QDES+ LV + +P ++D CAAPGGKT ++AS L S
Sbjct: 226 G--HLASSSLFHDGVMTIQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSC 283
Query: 358 QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSG 416
G V A+D+++ +++++ + A V+S + D R + + D++L+DAPCSG
Sbjct: 284 GGEVVALDVHEHKVKLIEDNAARLGVSSAVYAQKMDAREVSKQFEAEQFDRILVDAPCSG 343
Query: 417 LGVLSK 422
LG+L +
Sbjct: 344 LGLLRR 349
>gi|294618612|ref|ZP_06698151.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1679]
gi|291595131|gb|EFF26469.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1679]
Length = 445
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 108/366 (29%), Positives = 187/366 (51%), Gaps = 33/366 (9%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L R+ GGA+++LL NEM + +L+ +D+ L T+++
Sbjct: 6 RYMALLTLERVNKGGAYSNLLL--------NEM--------IKQSELNQKDVGLFTELIY 49
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI +R L+ + L K ++ + +L + Y++ LD +P +A+++E V +A
Sbjct: 50 GTISHQRLLEFYVAPLIAKAK---KVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIA 106
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
KV PG G VNG+LR + P L+G R L+ S P+WM +R
Sbjct: 107 KVKGNPGTGKFVNGVLR------NYQRQGAPDLQGIADPIER-LSFKISLPLWMTKRLVD 159
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKT 299
+G EE KL + S R ++R+ ++R + L ++ E S I K
Sbjct: 160 QIGYEETEKLGLSLYQPSHASARVDTRR-LSRDQAITVLQEEEITAEKSQVSPYGIVAKK 218
Query: 300 GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL--SG 357
G ++ + L +G+ +QDES+ LV + +P ++D CAAPGGKT ++AS L S
Sbjct: 219 G--HLASSSLFHDGVMTIQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSC 276
Query: 358 QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSG 416
G V A+D+++ +++++ + A V+S + D R + + D++L+DAPCSG
Sbjct: 277 GGEVVALDVHEHKVKLIEDNAARLGVSSAVYAQKMDAREVSKQFEAEQFDRILVDAPCSG 336
Query: 417 LGVLSK 422
LG+L +
Sbjct: 337 LGLLRR 342
>gi|148380461|ref|YP_001255002.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum A str. ATCC 3502]
gi|153931256|ref|YP_001384684.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum A str. ATCC 19397]
gi|153936344|ref|YP_001388205.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum A str. Hall]
gi|168180610|ref|ZP_02615274.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum NCTC 2916]
gi|170756128|ref|YP_001782050.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum B1 str. Okra]
gi|148289945|emb|CAL84058.1| putative ribosomal RNA methyltransferase [Clostridium botulinum A
str. ATCC 3502]
gi|152927300|gb|ABS32800.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum A str. ATCC 19397]
gi|152932258|gb|ABS37757.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum A str. Hall]
gi|169121340|gb|ACA45176.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum B1 str. Okra]
gi|182668623|gb|EDT80602.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum NCTC 2916]
Length = 442
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 162/318 (50%), Gaps = 13/318 (4%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L D D L+T+IV GT++++ LD I + + +M+ ++ ILRI Y+I LD
Sbjct: 34 NLKDNDKALITEIVYGTLKYKETLD--IIIQSYLRNPIKTMDKNIVNILRITIYQIRYLD 91
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A V+E V ++K + LVNG+LR + N + R +
Sbjct: 92 KIPSFAAVNEAVEMSK-KISIKYSKLVNGVLRNYIRTYKNKKFY------DHRNNLEKFS 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
+YS+P W+++ + G E A K++ N P+ ++R N+ K + + +L
Sbjct: 145 FMYSYPKWLIKMFISQYGIEIAEKILKGLNERPNITVRVNNLK-IDYDEAFEKLGEYGYN 203
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
E E I++ G +N+ + L EG VQDESA LV ++ ++D C+AP
Sbjct: 204 IEEGYICPEAIQIIKG-KNIEKNPLFIEGNITVQDESAMLVAPSMELDEESIVLDLCSAP 262
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404
GGKT +++ ++ + VYA D+++ +L ++ AK + + I T D F K
Sbjct: 263 GGKTTHISEIMNNKSKVYAYDVHQNKLSLIESNAKRLGIKN-IETDVGDAAVFNKKLKEK 321
Query: 405 CDKVLLDAPCSGLGVLSK 422
+VL+D PCSGLG++ K
Sbjct: 322 AHRVLMDVPCSGLGIIRK 339
>gi|428223826|ref|YP_007107923.1| sun protein [Geitlerinema sp. PCC 7407]
gi|427983727|gb|AFY64871.1| sun protein [Geitlerinema sp. PCC 7407]
Length = 446
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 107/335 (31%), Positives = 163/335 (48%), Gaps = 19/335 (5%)
Query: 94 GYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLL 151
GY + L R DL D RL T++V G++R +R LD L+ L K P L
Sbjct: 20 GYADVVLDRLLRQADLQPADRRLATELVYGSVRQQRTLDALVDQL--GTKRLDQQPPDLR 77
Query: 152 QILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLK---DNNSL 207
++ +G Y++ L +P A V+ V +AK +VNG+LR+ + L D L
Sbjct: 78 FLMHLGLYQLRYLSQVPAAAAVNTTVEIAKHNRLGRLAAVVNGMLRQYLRLAAQGDPLQL 137
Query: 208 PLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK 267
P LE LA YS+P W++ W + L +L N P LR N +
Sbjct: 138 PADPLE--------RLAVQYSYPTWILEVWRQQLDDAGVEQLCQALNQPPPLDLRVNLLR 189
Query: 268 GVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVA 327
A + L + E + + +R++ + + KEG VQD SA LV
Sbjct: 190 STPEA-VQTALAQAGIVAEPVPGVPQALRLQGSPGTISELPGFKEGWWTVQDSSAQLVSQ 248
Query: 328 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVI 387
V+DP+PG++++D CAAPGGKT ++A + +G ++A D RLR + + + + SV
Sbjct: 249 VLDPRPGETVIDACAAPGGKTTHLAELMGDRGTIWACDRYPSRLRKVTQNLQRLGLQSV- 307
Query: 388 RTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
R D R + + D+VL+DAPCSGLG L++
Sbjct: 308 RLQAGDSRDLSQFRQ-QADRVLVDAPCSGLGTLNR 341
>gi|226949860|ref|YP_002804951.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum A2 str. Kyoto]
gi|226843504|gb|ACO86170.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum A2 str. Kyoto]
Length = 442
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 162/318 (50%), Gaps = 13/318 (4%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L D D L+T+IV GT++++ LD I + + +M+ ++ ILRI Y+I LD
Sbjct: 34 NLKDNDKALITEIVYGTLKYKETLD--IIIQSYLRNPIKTMDKNIVNILRITIYQIRYLD 91
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A V+E V ++K + LVNG+LR + N + R +
Sbjct: 92 KIPSFAAVNEAVEMSK-KISIKYSKLVNGVLRNYIRTYKNKKFY------DHRNNLEKFS 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
+YS+P W+++ + G E A K++ N P+ ++R N+ K + + +L
Sbjct: 145 FMYSYPKWLIKMFISQYGIEIAEKILKGLNERPNITVRVNNLK-IDYDEAFEKLGKYGYN 203
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
E E I++ G +N+ + L EG VQDESA LV ++ ++D C+AP
Sbjct: 204 IEEGYICPEAIQIIKG-KNIEKNPLFIEGNITVQDESAMLVAPSMELDEESIVLDLCSAP 262
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404
GGKT +++ ++ + VYA D+++ +L ++ AK + + I T D F K
Sbjct: 263 GGKTTHISEIMNNKSKVYAYDVHQNKLSLIESNAKRLGIKN-IETDVGDAAVFNKKLKEK 321
Query: 405 CDKVLLDAPCSGLGVLSK 422
+VL+D PCSGLG++ K
Sbjct: 322 AHRVLMDVPCSGLGIIRK 339
>gi|335040151|ref|ZP_08533287.1| sun protein [Caldalkalibacillus thermarum TA2.A1]
gi|334179976|gb|EGL82605.1| sun protein [Caldalkalibacillus thermarum TA2.A1]
Length = 429
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 101/334 (30%), Positives = 173/334 (51%), Gaps = 43/334 (12%)
Query: 103 RTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIV 162
+ + LD RD L+T++V GTI+ +R LD + ++ + ++ + Q+LR+ Y++
Sbjct: 32 KHRQLDLRDRHLLTELVYGTIQHQRLLDFYLEPFL--KQGMAKLDVWVKQLLRLSAYQLF 89
Query: 163 KLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
L +P YAVV+E V+LAK G L+NG+LR L+ R R
Sbjct: 90 FLTRIPSYAVVNEAVKLAKKRGHRGIQGLINGVLRNLL-----------------REPKR 132
Query: 222 ALATI----------YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR 271
+L TI SHP W+V RW + G + A ++ NN P ++R N K ++
Sbjct: 133 SLDTICDPVERIAVETSHPTWLVARWAEQYGLKTAQEICRANNERPVLTVRVNPLKA-SK 191
Query: 272 ADLVMQLNLLKVPHELSLHLDEFIRVKTGLQ-----NVIQAGLLKEGLCAVQDESAGLVV 326
+++ L L H+ E + GL+ ++++ L K+G +Q ES+ LV
Sbjct: 192 QEVMDHLR------ALGYHVSETAVAQQGLRVENPAKLMESSLFKQGYFTIQSESSMLVA 245
Query: 327 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV 386
++ P+PG ++D CAAPGGKT ++A + +G V A D++ +L+++ + AK + ++
Sbjct: 246 PLLRPEPGMKVLDLCAAPGGKTTHLAELMDNRGHVVANDVHAHKLKLIKKAAKRLGI-TI 304
Query: 387 IRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVL 420
I D T + +++L+DAPCSG GV+
Sbjct: 305 INVTAYDGTTVSSGQLGHFERILVDAPCSGFGVI 338
>gi|387818730|ref|YP_005679077.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum H04402 065]
gi|322806774|emb|CBZ04343.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum H04402 065]
Length = 442
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 162/318 (50%), Gaps = 13/318 (4%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L D D L+T+IV GT++++ LD I + + +M+ ++ ILRI Y+I LD
Sbjct: 34 NLKDNDKALITEIVYGTLKYKETLD--IIIQSYLRNPIKTMDKNIVNILRITIYQIRYLD 91
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A V+E V ++K + LVNG+LR + N + R +
Sbjct: 92 KIPSFAAVNEAVEMSK-KISIKYSKLVNGVLRNYIRTYKNKKFY------DHRNNLEKFS 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
+YS+P W+++ + G E A K++ N P+ ++R N+ K + + +L
Sbjct: 145 FMYSYPKWLIKMFISQYGIEIAEKILKGLNERPNITVRVNNLK-IDYDEAFEKLGEYGYN 203
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
E E I++ G +N+ + L EG VQDESA LV ++ ++D C+AP
Sbjct: 204 IEEGYICPEAIQIIKG-KNIEKNPLFIEGNITVQDESAMLVAPSMELDEESIVLDLCSAP 262
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404
GGKT +++ ++ + VYA D+++ +L ++ AK + + I T D F K
Sbjct: 263 GGKTTHISEIMNNKSKVYAYDVHQNKLSLIESNAKRLGIKN-IETDVGDAAVFNKKLKEK 321
Query: 405 CDKVLLDAPCSGLGVLSK 422
+VL+D PCSGLG++ K
Sbjct: 322 AHRVLMDVPCSGLGIIRK 339
>gi|452992525|emb|CCQ96058.1| Ribosomal RNA small subunit methyltransferase B [Clostridium
ultunense Esp]
Length = 446
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 108/368 (29%), Positives = 182/368 (49%), Gaps = 39/368 (10%)
Query: 61 RAVSAVRLMRIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIV 119
R + LM I+ GA+++ +NK F ++D +D L+ ++V
Sbjct: 4 REIGLKILMDIKLKGAYSNYAINK------------------FLKDEMDVKDENLIRELV 45
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRL 178
G + YLDH+I L + ++P +L+ILR+G Y+I ++ +P A V+E V L
Sbjct: 46 YGVVENCLYLDHIISKLS--KVKIKKIQPAILEILRMGVYQIAFMEKIPDRAAVNEAVIL 103
Query: 179 AKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWT 238
+K GA VNG+LR ++ SL + + ++ L+ +YSHP WMV RW
Sbjct: 104 SKKYGYKGASGFVNGVLRNFS--RNKESLMMVE----EKNPITYLSIMYSHPKWMVERWV 157
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVK 298
G E KL NN+ P ++R N K +R L+ L+ + ++ ++ +
Sbjct: 158 DEYGYEFTEKLCRENNNKPRLNIRVNRLK-TSREQLMDSLS----DYGYMVYKTKYAKDG 212
Query: 299 TGLQNVIQAGLLKE---GLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL 355
+ N I+ +KE G +QDES+ LV + +P+ ++D C+APGGK+ +M +
Sbjct: 213 IIVDNPIRITEVKEFKLGHFTIQDESSMLVSQIANPKEDSLVLDLCSAPGGKSTHMGELM 272
Query: 356 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV-KCDKVLLDAPC 414
+G + + DI +L ++ E ++ + I L D S V K D +LDAPC
Sbjct: 273 GNKGRIISRDIYDHKLDLVRENFGRLGIDIIEIEIFNALDL--DKSMVGKVDYCILDAPC 330
Query: 415 SGLGVLSK 422
SGLG++ +
Sbjct: 331 SGLGIIRR 338
>gi|289578506|ref|YP_003477133.1| sun protein [Thermoanaerobacter italicus Ab9]
gi|289528219|gb|ADD02571.1| sun protein [Thermoanaerobacter italicus Ab9]
Length = 444
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 176/359 (49%), Gaps = 32/359 (8%)
Query: 103 RTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH---DEKTFSSMEPLLLQILRIGFY 159
+ ++L + D + +V G I + LD ++ DEK+ +E +G Y
Sbjct: 30 KGRELKEVDRDFIKKLVFGVIERKYTLDFILSFFVKKPADEKSKIFLE--------MGLY 81
Query: 160 EIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRA 218
+++ +D +P YA ++E V +AK L N +N +LR K+ P +R
Sbjct: 82 QLLYMDKVPSYAAINETVNIAKNVLGIKRANFINAVLRSYEREKEKVIFP-----DKERD 136
Query: 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL 278
+ L YS+P W+V R +E+A L+ N P R N+ K + DL L
Sbjct: 137 LRKYLMVTYSYPDWIVERLLNNYDEEKAEALLKSLNEKPKICYRVNTLK-IDIEDLKKLL 195
Query: 279 NLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 338
+ ++ +L+E + + ++N L KEGL +QDE++ LV +++P G++++
Sbjct: 196 VSRGIVYKKGYYLEEALYI--DIKNPESHQLYKEGLIYIQDEASMLVSKILNPNEGETVL 253
Query: 339 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398
D CAAPGGKT ++A + G V A D++ RL ++ E K + +V A TF
Sbjct: 254 DVCAAPGGKTTHIAQLMKNTGNVVAFDLHPHRLELIKENCKRLGITNV--KAEAFDSTFV 311
Query: 399 DNSTV-KCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
++ + K DKVL D PC+G+G++ K D ++ Y K+ + L ET+Y +L
Sbjct: 312 NDKYLEKADKVLADVPCTGIGIIRKK----PDIKLK---NYTKSE--ISQLVETQYKIL 361
>gi|423389828|ref|ZP_17367054.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG1X1-3]
gi|423418228|ref|ZP_17395317.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG3X2-1]
gi|401106501|gb|EJQ14462.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG3X2-1]
gi|401641919|gb|EJS59636.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG1X1-3]
Length = 444
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 101/319 (31%), Positives = 165/319 (51%), Gaps = 20/319 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLR-----KKVEAWVRVLLRLSLYQMLYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P LE + LA
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPSLE-EIKDPVERLAI 143
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHP W+V+ W G E A K+ N P + R N K VT + + L +
Sbjct: 144 TTSHPAWLVQDWVSEYGLETAGKMCEVNMLPPVPTARVNVDK-VTVEEAIGLLANEGIEA 202
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ D+ I+++ G NV K+G ++QDES+ LV ++P G ++D CAAPG
Sbjct: 203 KRGDLSDDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEPNEGDEVLDSCAAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHA-DLRTFADNSTV 403
GKT ++A L G G V ++D++ ++R++ + A +L N + + A ++ +N T
Sbjct: 261 GKTTHIAERLKGTGKVMSLDLHAHKVRLIRQQADRLGLENVETKALDARKVQEHFENETF 320
Query: 404 KCDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 321 --DKILVDAPCSGFGVIRR 337
>gi|431758710|ref|ZP_19547335.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E3083]
gi|430617078|gb|ELB53964.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E3083]
Length = 452
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 108/366 (29%), Positives = 186/366 (50%), Gaps = 33/366 (9%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L R+ GGA+++LL NEM + +L+ +D+ L T+++
Sbjct: 13 RYMALLTLERVNKGGAYSNLLL--------NEM--------IKQSELNQKDVGLFTELIY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI +R L+ + L K ++ + +L + Y++ LD +P +A+++E V +A
Sbjct: 57 GTISHQRLLEFYVASLIAKAK---KVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIA 113
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
KV PG G VNG+LR + P L+G R L+ S P+WM +R
Sbjct: 114 KVKGNPGTGKFVNGVLR------NYQRQGAPDLQGIADPIER-LSVKISLPLWMTKRLVD 166
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKT 299
+G EE KL + S R ++ + ++R + L ++ E S I K
Sbjct: 167 QIGYEETEKLGLSLYQPSHASARVDTHR-LSRDQAITVLQEEEISAEKSQVSPYGIVAKK 225
Query: 300 GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL--SG 357
G ++ + L +G+ +QDES+ LV + +P ++D CAAPGGKT ++AS L S
Sbjct: 226 G--HLASSSLFHDGVMTIQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSC 283
Query: 358 QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSG 416
G V A+D+++ +++++ E A V+S + D R + + D++L+DAPCSG
Sbjct: 284 GGEVIALDVHEHKVKLIEENATRLGVSSAVYAQKMDAREVSKQFEPEQFDRILVDAPCSG 343
Query: 417 LGVLSK 422
LG+L +
Sbjct: 344 LGLLRR 349
>gi|387927084|ref|ZP_10129763.1| 16S rRNA methyltransferase B [Bacillus methanolicus PB1]
gi|387589228|gb|EIJ81548.1| 16S rRNA methyltransferase B [Bacillus methanolicus PB1]
Length = 446
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 101/320 (31%), Positives = 170/320 (53%), Gaps = 22/320 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGFYEIVKL 164
+D +D+ L+T++ GT++ + LD+ + K F +P +L +LR+ Y++V L
Sbjct: 38 IDQKDVGLLTELTYGTLQRQMTLDYFL-------KPFIKKKPDRWVLHLLRLTLYQMVYL 90
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
D +P A + E V +AK G ++VNG+LR + LP LE N + L
Sbjct: 91 DKIPDRASIYEAVEIAKKRGHKGIASMVNGVLRSI------QREGLPSLE-NIKDPIERL 143
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
A SHP W+V+RWT G E+ K+ N + P + R N K ++R + + L
Sbjct: 144 AVETSHPAWLVKRWTDQFGFEKTKKMCETNLTAPLQTARVNVTK-ISRDECLQLLENEGF 202
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
E S + E IR G N+ + K GL +QDES+ LV ++ + +++D CAA
Sbjct: 203 NVEASPIIPEAIRCLKG--NLAASNAFKNGLITIQDESSMLVAYALNIEENNTVLDACAA 260
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403
PGGK+ ++A L+ G V ++D++ +++++ A+ +N+ I D R ++
Sbjct: 261 PGGKSTHIAERLNKTGKVISLDLHDHKVKLIGIAAERLGLNN-IEAKALDSRFVPEHFAA 319
Query: 404 KC-DKVLLDAPCSGLGVLSK 422
+ D++LLDAPCSGLGV+ +
Sbjct: 320 ESFDRILLDAPCSGLGVMRR 339
>gi|373464418|ref|ZP_09555957.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
kisonensis F0435]
gi|371762620|gb|EHO51149.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
kisonensis F0435]
Length = 444
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 111/353 (31%), Positives = 175/353 (49%), Gaps = 36/353 (10%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L T+IV G I+ R L + + + + + E + ++L Y++ LD +P
Sbjct: 42 DKALFTNIVYGVIQHRLTLQYQLNPFIREPQ---NTETWVKELLYTAMYQLTYLDRVPKR 98
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQARALATIY 227
A+ DE +++AK G V GIL ++ + D N++ + + + L+ Y
Sbjct: 99 AIFDETIKIAKSMGHDGTRRFVTGILHQMDRKGVADVNAI---------QDENKRLSIAY 149
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHEL 287
S P W+V + LG+ +A ++ N P S+RAN+ K T+ADL+ +L E
Sbjct: 150 SVPTWLVTMLQEQLGKAKAKSILQSLNVAPKQSVRANATK-TTQADLITKLAAADFDVEK 208
Query: 288 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 347
S E I +K G ++ + K+GL +QDESA L V + P I+D C+APGGK
Sbjct: 209 SQVASEGIIIKDG--QIVHSSFFKDGLLTIQDESAMLPVESMPINPDDMILDACSAPGGK 266
Query: 348 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR----TFADNSTV 403
T +AS L G V+A+DI+K +L+ + + A V+ I T D R F D
Sbjct: 267 TTQIASRLKS-GKVFALDIHKNKLKTVLKNATRMGVDKNIETFELDARKVDQKFDDEL-- 323
Query: 404 KCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
D++L+DAPCSGLG+L R +RY KT ++ L E + +L
Sbjct: 324 -FDQILVDAPCSGLGLL----------RRKPEIRYDKTPEDIKRLSEIQLQIL 365
>gi|393201779|ref|YP_006463621.1| tRNA and rRNA cytosine-C5-methylase [Solibacillus silvestris
StLB046]
gi|406664656|ref|ZP_11072431.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
isronensis B3W22]
gi|327441110|dbj|BAK17475.1| tRNA and rRNA cytosine-C5-methylase [Solibacillus silvestris
StLB046]
gi|405387504|gb|EKB46928.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
isronensis B3W22]
Length = 453
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/318 (30%), Positives = 169/318 (53%), Gaps = 18/318 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D L+T++ GT++ + LD+ + ++ + +LR+ Y++ L
Sbjct: 44 IDAKDRGLLTELTYGTLQHKLTLDYYLEPFIR-----GKVDIWVRWLLRMSLYQMQYLTR 98
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A V+E V +AK G ++VNGILR +L + S L + + N+R LA
Sbjct: 99 IPAHAAVNEAVEIAKRRGHKGIASMVNGILRS-ILREGVRSTDLIE-DANER-----LAI 151
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHP W+V RW + G ++ ++++ NN P ++R N+ K T ++ L V
Sbjct: 152 ETSHPQWLVDRWVESYGYDKTREMLLENNIAPLQTVRVNTTKA-TVEQVLTTLEREGVKA 210
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
S ++ E + +++G + G + GL +QDES+ L V++PQPG ++D CAAPG
Sbjct: 211 RRSEYIPECLHLESG--QAARTGAFRNGLITIQDESSMLPAKVLNPQPGMKVLDMCAAPG 268
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404
GKT ++A + +G + A D++ +L ++ E +N +I T D R A
Sbjct: 269 GKTTHLAEVMKNEGSILATDLHPKKLDLIEENVARLGLN-IIETAPLDGRKAAGFLQKEG 327
Query: 405 CDKVLLDAPCSGLGVLSK 422
D +L+DAPCSGLGV+ +
Sbjct: 328 YDAILVDAPCSGLGVMRR 345
>gi|418323824|ref|ZP_12935086.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
pettenkoferi VCU012]
gi|365229170|gb|EHM70333.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
pettenkoferi VCU012]
Length = 437
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 100/319 (31%), Positives = 169/319 (52%), Gaps = 26/319 (8%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
DL D L+T+IV GT++ + LD+L+ K F + ++ + +L + Y+
Sbjct: 37 DLSQADKGLITEIVYGTLKRQYTLDYLL-------KPFIQTKLKRWVRILLWMSIYQYRY 89
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
LD +P +AV++E V +AK P G +VNGILR++ + LP P + + R
Sbjct: 90 LDRIPTHAVINEAVMIAKQRGGPHQGKIVNGILRQIT----RSELPDPMKIQDPK---RR 142
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
L+ YS P+W++ W Y G EE ++ + ++R N+ K ++ ++ V +L
Sbjct: 143 LSISYSLPMWVIEHWITYYGLEETERIAQSMLEHVAQTVRVNTAK-ISTSEAVQRLEEEG 201
Query: 283 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
E LD + V G+ + + +EGL ++QD+S+ V +DPQ G I+D C+
Sbjct: 202 FTVEEDAELDVCLHVNGGV--IANSDSFREGLISIQDKSSMFVAHYLDPQIGDHILDACS 259
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN-SVIRTIHADLRTFADNS 401
APGGK ++ L G G V A DI++ ++ ++ E +H++ S ++ + D T
Sbjct: 260 APGGKACHIGELLRGTGQVTATDIHQHKIALIQEN--IHKLGLSHVKAMQHDATTPYQE- 316
Query: 402 TVKCDKVLLDAPCSGLGVL 420
D++L+DAPCSGLGVL
Sbjct: 317 --MYDRILVDAPCSGLGVL 333
>gi|228992593|ref|ZP_04152520.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
pseudomycoides DSM 12442]
gi|228998641|ref|ZP_04158228.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
Rock3-17]
gi|228761109|gb|EEM10068.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
Rock3-17]
gi|228767227|gb|EEM15863.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
pseudomycoides DSM 12442]
Length = 415
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 101/321 (31%), Positives = 164/321 (51%), Gaps = 24/321 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 7 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLR-----KKVEAWVKILLRLSLYQMLYLDR 61
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P LE R ++
Sbjct: 62 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI------QREGVPSLEEIQNPVER-VSV 114
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHP W+V+ W E A K+ N P + R N K +T + + L V
Sbjct: 115 ATSHPEWLVQEWVSAYDLETAQKMCEVNMVPPVPTARVNVDK-ITVEEAIALLEREGVQA 173
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ ++ I+++ G NV K G ++QDES+ LV + P+ G ++D CAAPG
Sbjct: 174 KRGDLSEDAIQIEKG--NVAHTEAFKNGFLSIQDESSMLVARALKPEEGDMVLDSCAAPG 231
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADNS 401
GKT ++A L G G V ++D++ ++R++ + AK ++ + I T D R FA+ S
Sbjct: 232 GKTTHIAERLKGTGQVTSLDLHPHKVRLIQQQAKRLELEN-IETKALDARKVQEHFANES 290
Query: 402 TVKCDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 291 ---FDKILVDAPCSGFGVIRR 308
>gi|319790535|ref|YP_004152168.1| sun protein [Thermovibrio ammonificans HB-1]
gi|317115037|gb|ADU97527.1| sun protein [Thermovibrio ammonificans HB-1]
Length = 445
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 167/356 (46%), Gaps = 38/356 (10%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
T L ++ + ++V GT+R+ R LD + + +S +P + LR+ Y++
Sbjct: 32 TAALTPQERAFLRELVNGTVRFLRLLD--FSVERASGRRLASQKPTVRNALRLLAYQLFF 89
Query: 164 LDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA- 222
+PPYA ++E V + K L GA VN + +KL L N R + +
Sbjct: 90 TGVPPYAALNETVEVVKQRLGKGAAGFVNAVGKKL-------------LNFNYREEVESI 136
Query: 223 ------LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM 276
LAT++S WMV+RW + G E L+ N +R N + +
Sbjct: 137 KDPLERLATLHSFETWMVKRWESFYGPRELPHLLEGLNKVAPLFIRVN----LIKTQPQE 192
Query: 277 QLNLLK---VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQP 333
LNLLK V E L E IR+K G N+ + KEGL +QD ++ L ++ P+P
Sbjct: 193 LLNLLKSAGVEAEPHPFLKEMIRIK-GRVNLPELPGFKEGLFYIQDPASYLAAYLLQPKP 251
Query: 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK---LHQVNSVIRTI 390
G+ I+D AAPGGKT +AS + A+D+N+ R +L E + + VI I
Sbjct: 252 GELILDVGAAPGGKTTAIASLTGNGAKIVAVDVNRERAELLKENLRKLGVENTEVVITDI 311
Query: 391 HADLRTFADNSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQ 446
D F + K D++L+DAPCS GV+ + G W KSL K + +Q
Sbjct: 312 ARD-PNFLNRFRGKFDRILIDAPCSATGVIRRHPE--GKWN--KSLSLIKHNQTIQ 362
>gi|390934823|ref|YP_006392328.1| sun protein [Thermoanaerobacterium saccharolyticum JW/SL-YS485]
gi|389570324|gb|AFK86729.1| sun protein [Thermoanaerobacterium saccharolyticum JW/SL-YS485]
Length = 447
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 165/326 (50%), Gaps = 20/326 (6%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F + +L D D + +IV GTI ++ LD +I C K ++ +L IL +G Y+I
Sbjct: 29 FNSNELSDVDRSFIKEIVFGTIERKQTLDRIIDY-CS-TKGIKKIDNRILIILEMGLYQI 86
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ +D +P YA + E V LAK A VN +LR V NS + L+ D+
Sbjct: 87 IYMDKVPHYAAISEAVNLAKKYAGTYASKFVNAVLRNYV----RNSEKIDVLKS-DQNLV 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK-GVTRADLVMQ-- 277
LA YS+P W+V+R + ++ N P S+R N+ K G+ + + ++
Sbjct: 142 EYLAFKYSYPEWIVKRLLNNYDKGVVEDILKSLNERPEISVRLNTLKVGMQKFEKILMDR 201
Query: 278 -LNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 336
LN K L++D+ + L+N+ + K+G +QDE A ++ + P G
Sbjct: 202 GLNFKK-----GLYVDDAYYI--DLKNIADDEIYKDGFVQIQDEGAMIISKALSPNLGDL 254
Query: 337 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396
I+D C+APGGKT +++ ++ +G V A DI++ ++ ++ K VN+V + D
Sbjct: 255 IIDVCSAPGGKTTHISQLMNNEGKVIAFDIHEHKIDLIKMNCKRLGVNNVDAYVF-DSTK 313
Query: 397 FADNSTVKCDKVLLDAPCSGLGVLSK 422
+ K DKVL D PC+G+G++ K
Sbjct: 314 INEKYIDKADKVLADVPCTGIGIIRK 339
>gi|218290478|ref|ZP_03494598.1| sun protein [Alicyclobacillus acidocaldarius LAA1]
gi|218239499|gb|EED06694.1| sun protein [Alicyclobacillus acidocaldarius LAA1]
Length = 451
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 102/315 (32%), Positives = 163/315 (51%), Gaps = 10/315 (3%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D+RD L T+I GT+R + LD L+ L + S ++P + ILR+G Y++ L+
Sbjct: 36 VDERDRALATEIAYGTLRRQITLDRLLSPLVR--RPMSKLDPEVRVILRMGAYQMTWLNR 93
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P YAV ++ V LAK RP A LVN +LR+ + L K + R +
Sbjct: 94 VPAYAVANDAVELAK-RHRPQAAALVNAVLRRYAERAQDWEDLLNKAIAGAKDVER-WSV 151
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
+YS P W+V R G + + + N SLRAN +G TR + + +L
Sbjct: 152 MYSVPAWIVERLVADHGADRVLAALASMNEPAPMSLRANRLRG-TREEAIARLGAEGAVA 210
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ ++ +RV+ G +V + ++G +QDE A LV ++ P+PG +VD CAAPG
Sbjct: 211 RPAALAEDGLRVQ-GQIDVTRLQAYRDGYVTIQDEGAMLVAPLLRPEPGMRVVDLCAAPG 269
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405
GKT ++A + +G + A D+ ++R + + A+ + SV R D R +
Sbjct: 270 GKTTHVAELMGDRGEIDAYDVTVAKVRAIRQQAERLGLQSV-RPRLGDGRQVQPEALY-- 326
Query: 406 DKVLLDAPCSGLGVL 420
D L+DAPC+GLGV+
Sbjct: 327 DAALVDAPCTGLGVM 341
>gi|297544782|ref|YP_003677084.1| sun protein [Thermoanaerobacter mathranii subsp. mathranii str. A3]
gi|296842557|gb|ADH61073.1| sun protein [Thermoanaerobacter mathranii subsp. mathranii str. A3]
Length = 444
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 176/359 (49%), Gaps = 32/359 (8%)
Query: 103 RTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH---DEKTFSSMEPLLLQILRIGFY 159
+ ++L + D ++V G I + LD ++ DEK+ +E +G Y
Sbjct: 30 KGQELKEIDRGFTKELVFGVIERKYTLDFILSFFVKKPADEKSKIFLE--------MGLY 81
Query: 160 EIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRA 218
+++ +D +P YA ++E V +AK L N +N +LR K+ P +R
Sbjct: 82 QLLYMDKVPSYAAINETVNIAKNVLGIKRANFINAVLRSYEREKEKVIFP-----DKERD 136
Query: 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL 278
+ L YS+P W+V R +E+A L+ N P R N+ K + DL L
Sbjct: 137 LRKYLMVTYSYPDWIVERLLNNYDEEKAEALLKSLNEKPKICYRVNTLK-IDIEDLKKLL 195
Query: 279 NLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 338
+ ++ +L+E + + ++N L KEGL +QDE++ LV +++P G++++
Sbjct: 196 VSRGIVYKKGYYLEEALYI--DIKNPESHQLYKEGLIYIQDEASMLVSKILNPNEGETVL 253
Query: 339 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398
D CAAPGGKT ++A + G V A D++ RL ++ E K + +V A TF
Sbjct: 254 DVCAAPGGKTTHIAQLMKNTGNVVAFDLHPHRLELIKENCKRLGITNV--KAEAFDSTFV 311
Query: 399 DNSTV-KCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
++ + K DKVL D PC+G+G++ K D ++ Y K+ + L ET+Y +L
Sbjct: 312 NDKYLEKADKVLADVPCTGIGIIRKK----PDIKLK---NYTKSE--ISQLVETQYKIL 361
>gi|431449111|ref|ZP_19513952.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1630]
gi|430585503|gb|ELB23788.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1630]
Length = 452
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 107/366 (29%), Positives = 187/366 (51%), Gaps = 33/366 (9%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L R+ GGA+++LL NEM + +L+ +D+ L T+++
Sbjct: 13 RYMALLTLERVNKGGAYSNLLL--------NEM--------IKQSELNQKDVGLFTELIY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI +R L+ + L K ++ + +L + Y++ LD +P +A+++E V +A
Sbjct: 57 GTISHQRLLEFYVAPLIAKAK---KVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIA 113
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
KV PG G VNG+LR + P L+G R L+ S P+WM +R
Sbjct: 114 KVKGNPGTGKFVNGVLR------NYQRQGAPDLQGIADPIER-LSVKISLPLWMTKRLVD 166
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKT 299
+G EE KL + S R ++R+ ++R + L ++ E S I +
Sbjct: 167 QIGYEETEKLGLSLYHPSHASARVDTRR-LSRDQAITVLQEEEITAEKSQVSPYGIVARK 225
Query: 300 GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL--SG 357
G ++ + L +G+ +QDES+ LV + +P ++D CAAPGGKT ++AS L S
Sbjct: 226 G--HLASSSLFHDGVMTIQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSC 283
Query: 358 QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSG 416
G V A+D+++ +++++ + A V+S + D R + + D++L+DAPCSG
Sbjct: 284 GGEVVALDVHEHKVKLIEDNAARLGVSSAVYAQKMDAREVSKQFEAEQFDRILVDAPCSG 343
Query: 417 LGVLSK 422
LG+L +
Sbjct: 344 LGLLRR 349
>gi|416350348|ref|ZP_11680855.1| 16S rRNA methyltransferase B [Clostridium botulinum C str.
Stockholm]
gi|338196305|gb|EGO88506.1| 16S rRNA methyltransferase B [Clostridium botulinum C str.
Stockholm]
Length = 443
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 99/317 (31%), Positives = 163/317 (51%), Gaps = 13/317 (4%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
++++D L+T+IV GTI+++ +D + L + +K S++ +L ILRI Y+I LD
Sbjct: 35 INEKDKGLITEIVYGTIKYKYTIDAI--LNTYLKKGTKSVDSYILNILRITIYQIKYLDK 92
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A V+E V +AK LVNG+LR N L K+ N + L
Sbjct: 93 IPNFAAVNEAVNIAKKHKSIRESKLVNGVLR-------NYLRNLDKVYYNKNSVVERLCF 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
YS W+V+ + +E K++ N P+ ++R N+ K + +L
Sbjct: 146 EYSCEKWLVKMFINQYNEEITEKILKGLNERPAVTVRVNNLK-TDYDEAFNKLEEYGYSI 204
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
E E I + G +++ L ++G VQDESA LV A +D + G ++D C+APG
Sbjct: 205 EEGYVCPEAIIINKG-KSIESNPLFEDGKVTVQDESAMLVAATMDIKEGSLVLDLCSAPG 263
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405
GKT +++ ++ G V A DI++ +L ++ + AK +N+ I D F +
Sbjct: 264 GKTTHISEIMNNTGKVMAFDIHENKLSLVKDNAKRLGINN-IECSKLDASKFNEKLKETA 322
Query: 406 DKVLLDAPCSGLGVLSK 422
D VL+D PCSGLG++ K
Sbjct: 323 DAVLIDVPCSGLGIIRK 339
>gi|422419438|ref|ZP_16496393.1| ribosomal RNA small subunit methyltransferase B [Listeria seeligeri
FSL N1-067]
gi|313632754|gb|EFR99722.1| ribosomal RNA small subunit methyltransferase B [Listeria seeligeri
FSL N1-067]
Length = 446
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 109/363 (30%), Positives = 188/363 (51%), Gaps = 38/363 (10%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGF 158
+ + L+ D L+T++V GT + + L + + F + EP + +LR+
Sbjct: 32 ALKKQKLNPLDKGLLTELVYGTTQRKITLXYYLA-------PFLNKEPDNWVKNLLRMSV 84
Query: 159 YEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDR 217
Y++ LD +P +A+++E +AK G VNG+LR V+ K S+ L + D
Sbjct: 85 YQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRN-VIRKGVPSIDLIQ----DP 139
Query: 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQ 277
+ A+ T S PVW+ +RW K G E+ ++ + P S+R N + + L+ +
Sbjct: 140 VEKIAVET--SLPVWLAKRWAKQYGNEQLREIGMAFLVAPHQSIRVNQTE-IRTEQLIKE 196
Query: 278 LNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 337
LN + + +DE + V+ G +V + K+G C++QDES+ L + + ++
Sbjct: 197 LNDQGITVTRNEFIDEALIVEKG--SVAETKAYKDGKCSIQDESSMLATYALQLEDNLTV 254
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT- 396
+D CAAPGGKT ++A + G G+V+A+DI++ + ++++ AK Q+ + IRT H D RT
Sbjct: 255 LDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDHAAKRLQLLN-IRTAHLDARTA 313
Query: 397 ---FADNSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKY 453
FA + D++L+DAPCSG GVL R ++Y KT + L E +
Sbjct: 314 STMFAPET---FDRILVDAPCSGFGVL----------RRKPDIKYAKTEKDIHKLAEIQL 360
Query: 454 LLL 456
+L
Sbjct: 361 AIL 363
>gi|423401293|ref|ZP_17378466.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG2X1-2]
gi|423457952|ref|ZP_17434749.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG5X2-1]
gi|423478003|ref|ZP_17454718.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG6X1-1]
gi|401148336|gb|EJQ55829.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG5X2-1]
gi|401654283|gb|EJS71826.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG2X1-2]
gi|402428165|gb|EJV60262.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG6X1-1]
Length = 444
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 99/319 (31%), Positives = 168/319 (52%), Gaps = 20/319 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 36 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL-EGNDRAQARALA 224
+P A + E V +AK G +VNG+LR + +P + E D + A+A
Sbjct: 91 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI------QREGVPSVDEIKDPIERLAIA 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
T SHP+W+V+ W G E A K+ N P + R N K +T + + L +
Sbjct: 145 T--SHPMWLVQDWASEYGLETAEKMCEVNMLPPVPTARVNVDK-ITVEEAIELLAGEGIE 201
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
+ ++ I+++ G NV K+G ++QDES+ LV ++P G ++D CAAP
Sbjct: 202 AKRGDLSEDAIQIERG--NVAHTDAFKKGFLSIQDESSMLVARALEPNEGDEVLDSCAAP 259
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STV 403
GGKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 260 GGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFANE 318
Query: 404 KCDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 319 TFDKILVDAPCSGFGVIRR 337
>gi|229006142|ref|ZP_04163829.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
Rock1-4]
gi|228755095|gb|EEM04453.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
Rock1-4]
Length = 415
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 101/321 (31%), Positives = 163/321 (50%), Gaps = 24/321 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D +D+ L+T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD
Sbjct: 7 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLR-----KKVEAWVKILLRLSLYQMLYLDR 61
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P LE R ++
Sbjct: 62 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI------QREGVPSLEEIQNPVER-VSV 114
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHP W+V+ W E A K+ N P + R N K +T + + L V
Sbjct: 115 ATSHPEWLVQEWVSAYDLETAQKMCEVNMVPPVPTARVNVDK-ITVEEAIALLEREGVQA 173
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
++ I+++ G NV K G ++QDES+ LV + P+ G ++D CAAPG
Sbjct: 174 NRGDLSEDAIQIEKG--NVAHTEAFKNGFLSIQDESSMLVARALKPEEGDMVLDSCAAPG 231
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADNS 401
GKT ++A L G G V ++D++ ++R++ + AK ++ + I T D R FA+ S
Sbjct: 232 GKTTHIAERLKGTGQVTSLDLHPHKVRLIQQQAKRLELEN-IETKALDARKVQEHFANES 290
Query: 402 TVKCDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 291 ---FDKILVDAPCSGFGVIRR 308
>gi|452974522|gb|EME74342.1| 16S rRNA methyltransferase B [Bacillus sonorensis L12]
Length = 450
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 104/347 (29%), Positives = 175/347 (50%), Gaps = 36/347 (10%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+T DL+D+D L+T++V GT++ + LD+++ K ++P ++ +LR+ Y++
Sbjct: 32 MKTNDLNDKDRGLLTELVYGTLQNKLALDYMLKPFI---KKPEKVKPWVIHLLRMSLYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK G + VNG+LR + +P D
Sbjct: 89 EYLEKIPDRAALFEAVEIAKKRGHKGISSFVNGVLRSI------QREGVPSFAEIDDPVK 142
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R LA SHP W+V+ WT G E A ++ + P ++R N K D L+
Sbjct: 143 R-LAVETSHPEWLVKEWTDAYGFEAAEQICRIHMIPPKQTIRVNKLK----HDRETMLHR 197
Query: 281 LKVPHELSLHLDEFIRVKTGLQ----NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 336
L+ E + +E GL+ + + KEG +QDES+ LV + P+PG++
Sbjct: 198 LR---EAGIKAEEGDLSPDGLKLLKGTIATSPFFKEGDVTIQDESSMLVARALGPKPGET 254
Query: 337 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHADLR 395
++D CAAPGGK+ ++ L G V ++D+++ +++++ E A +L N I T D R
Sbjct: 255 VLDACAAPGGKSTHIGELLENTGKVVSLDLHRHKVKLIQEAAGRLGLTN--IDTRAMDAR 312
Query: 396 TFADN-STVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKT 441
A+ + D++L+DAPCSG GV+ R L+Y KT
Sbjct: 313 KAAEAFQPEQFDRILVDAPCSGFGVI----------RRKPDLKYSKT 349
>gi|302874750|ref|YP_003843383.1| sun protein [Clostridium cellulovorans 743B]
gi|307690635|ref|ZP_07633081.1| sun protein [Clostridium cellulovorans 743B]
gi|302577607|gb|ADL51619.1| sun protein [Clostridium cellulovorans 743B]
Length = 443
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 106/337 (31%), Positives = 167/337 (49%), Gaps = 19/337 (5%)
Query: 91 NEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP 148
NE GY + +L++ D LVT+IV GTI+++ +D +I + SS++
Sbjct: 17 NERGYSNIIINKELNKSNLENIDKALVTEIVYGTIQYKYTIDKIIDHFVG--RGTSSVDK 74
Query: 149 LLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSL 207
++ ILR Y+I LD +P +AVV+E V L+K + +NG+LR + + N
Sbjct: 75 KVVNILRSAIYQIRYLDKIPSFAVVNEAVELSKKLSTVTSSKFINGVLRNYIRKTNENFY 134
Query: 208 PLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK 267
N L+ YS WMV+++ G A K++ N PS ++R NS K
Sbjct: 135 -------NKNNLVDRLSFEYSFEPWMVKKFISQYGNNIAEKILKGLNERPSITVRVNSLK 187
Query: 268 GVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVA 327
T + +L L E + E IR+ G +++ L +G VQDESA +V +
Sbjct: 188 -TTFDEAYEELEALGYSVEEGVIAPEAIRILKG-KSIENNPLFIKGSITVQDESAMIVAS 245
Query: 328 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVI 387
++P I D C+APGGKT ++A + + A DI +L+++ E K + S+
Sbjct: 246 ALEPSKDDVIFDMCSAPGGKTTHIAELSEDKSKIKAFDIFDHKLKLIEENIKRLGITSIE 305
Query: 388 RTIH-ADLR-TFADNSTVKCDKVLLDAPCSGLGVLSK 422
I A + D+S DKVL+D PCSGLG++ K
Sbjct: 306 TEIKDASIHDVLLDDS---ADKVLIDVPCSGLGIMRK 339
>gi|343520828|ref|ZP_08757797.1| ribosomal RNA small subunit methyltransferase B [Parvimonas sp.
oral taxon 393 str. F0440]
gi|343397786|gb|EGV10320.1| ribosomal RNA small subunit methyltransferase B [Parvimonas sp.
oral taxon 393 str. F0440]
Length = 434
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 165/321 (51%), Gaps = 14/321 (4%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
TK++ D D + + +IV GT+ R YLD++I LC + P +L ILRI Y+I+
Sbjct: 27 TKNISDLDSKFLREIVYGTLENRIYLDYIIKKLC--KLRIKKFNPYILNILRISIYQIIF 84
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
+D +P +A+++E V L KV + VNG LR + N K+E +D +A +
Sbjct: 85 MDKIPEFAIINEAVNLTKVFKLKKFSSFVNGSLRNFL----RNKEDFIKIEADDVEEAIS 140
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
+ YS + +V+ G+EE IK++ + P F++R +S + T +V L K
Sbjct: 141 IK--YSANMDIVKILLSDYGREETIKILENSMFKPHFAIRISSFEK-TEEKVVKDLK--K 195
Query: 283 VPHELSL-HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
++L + +F N+++ K G VQD + L V+ P+ ++D C
Sbjct: 196 DGYKLKKSEISKFTYFVENPTNILETESFKRGDFTVQDVGSILTGEVLAPKENSKVLDIC 255
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401
+APGGKT ++A + G ++A DI K +L+ + E K + +V + ++ D + +
Sbjct: 256 SAPGGKTCHLAFQMKNSGEIFANDIVKSKLKKIEENCKRLNIKNV-KLLNFDASIYKEEY 314
Query: 402 TVKCDKVLLDAPCSGLGVLSK 422
+ D +L D CSG+GV+ +
Sbjct: 315 KEQFDYILCDVICSGIGVMDR 335
>gi|227530540|ref|ZP_03960589.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus vaginalis
ATCC 49540]
gi|227349546|gb|EEJ39837.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus vaginalis
ATCC 49540]
Length = 449
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 114/379 (30%), Positives = 190/379 (50%), Gaps = 58/379 (15%)
Query: 96 VERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILR 155
V+ TL R +L D RLVT IV GT++ + L++ + L ++ ++P + +L
Sbjct: 31 VDETL--RRHELKPADQRLVTTIVYGTLQHQLTLEYWLKSLTPGKQ----LDPWVETLLL 84
Query: 156 IGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKL 212
FY+ LD +P +AV DE +++AK PG V G+L + + D +++
Sbjct: 85 TAFYQYNYLDRVPNWAVTDETIKIAKRRGNPGIRKFVTGVLHSALRKGVPDFSTI----- 139
Query: 213 EGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA 272
+ A+ L+ S P W+V ++ + G + K++ N S+R N++K
Sbjct: 140 ----KPIAKRLSIEASVPQWLVEKFIEENGVQTTKKILQAINEPAHVSIRVNTKKS---- 191
Query: 273 DLVMQLNLLKVPHELSLHLDEFIR------------VKTGLQNVIQAGLLKEGLCAVQDE 320
+L V +L LDE I V +G N++ + LLK+G+ +QDE
Sbjct: 192 ------SLETVKQQL---LDEGIETAESQVAVNALVVTSG--NIVNSPLLKDGVITIQDE 240
Query: 321 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETA 378
SA L V +D P ++D CAAPGGKT+ +A LS G V A+DI++ ++R++ + A
Sbjct: 241 SAMLAVESMDLHPQFKVLDACAAPGGKTVQIAEQLSSDQGGKVVALDIHQHKVRLIEKNA 300
Query: 379 KLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLR 437
+ V V++ I D R D + + D++L+DAPCSG+G+L R +R
Sbjct: 301 QRMGVEGVVKPIALDARKVNDKFADEEFDRILVDAPCSGMGLL----------RRKPEIR 350
Query: 438 YCKTSFLMQHLCETKYLLL 456
Y KT+ Q L + + +L
Sbjct: 351 YTKTAHDSQQLHQIQLAIL 369
>gi|253682518|ref|ZP_04863315.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum D str. 1873]
gi|253562230|gb|EES91682.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum D str. 1873]
Length = 443
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 98/317 (30%), Positives = 163/317 (51%), Gaps = 13/317 (4%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
++++D L+T+IV GTI+++ +D + L + +K S++ +L ILRI Y+I LD
Sbjct: 35 INEKDKGLITEIVYGTIKYKYTIDAI--LNTYLKKGTKSVDSYILNILRITIYQIKYLDK 92
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A V+E V +AK LVNG+LR + L K+ N + L
Sbjct: 93 IPNFAAVNEAVNIAKKHKSIRESKLVNGVLRNYLR-------NLDKVYYNKNSVVERLCF 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
YS W+V+ + +E K++ N P+ ++R N+ K + +L
Sbjct: 146 EYSCEKWLVKMFINQYNEEITEKILNGLNERPAVTVRVNNLK-TDYDEAFNKLEEYGYSI 204
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
E E I + G +++ L ++G VQDESA LV A +D + G ++D C+APG
Sbjct: 205 EEGYVCPEAIIINKG-KSIESNPLFEDGKVTVQDESAMLVAATMDIKEGSLVLDLCSAPG 263
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405
GKT +++ ++ G V A DI++ +L ++ + AK +N+ I D F +
Sbjct: 264 GKTTHISEIMNNTGKVMAFDIHENKLSLVKDNAKRLGINN-IECSKLDASKFNEKLKETA 322
Query: 406 DKVLLDAPCSGLGVLSK 422
D VL+D PCSGLG++ K
Sbjct: 323 DAVLIDVPCSGLGIIRK 339
>gi|134299563|ref|YP_001113059.1| sun protein [Desulfotomaculum reducens MI-1]
gi|134052263|gb|ABO50234.1| sun protein [Desulfotomaculum reducens MI-1]
Length = 453
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 98/313 (31%), Positives = 156/313 (49%), Gaps = 11/313 (3%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D T+IV G +R +D ++ ++ +S + ILR+G Y+I+ + +P
Sbjct: 41 DRAFATEIVYGVLRNLNTIDWVLAHFL--KQPLASQTVWIRNILRMGTYQIMFMPRVPDS 98
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A +E+V LAK GA VNG+LR + + +SL P + A +A YSH
Sbjct: 99 AACNESVNLAKKYGHQGAPKFVNGVLRNVA--RQQHSLEFPD---SKEAPVDHIALKYSH 153
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSL 289
P W+V RW G E+ I L NN ++R N+ K ++R DL+ +L V +
Sbjct: 154 PTWLVERWLMQYGFEQTIALCQANNRPAPNTVRTNTLK-ISREDLMARLKAEGVEARETK 212
Query: 290 HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 349
+ E + + +G + + G VQDES+ LV V++P G ++D +APGGKT
Sbjct: 213 FVPEGLNL-SGFLSYRTLKSFQGGFFQVQDESSMLVAHVLNPSSGAKVLDVASAPGGKTT 271
Query: 350 YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 409
++A + G + A DI +L ++ + + + S+ + AD R D VL
Sbjct: 272 HLAQLMGDSGQIIAFDIYSHKLDLIMDNCRRLGIQSIQAEV-ADARDLHKKYQGWADYVL 330
Query: 410 LDAPCSGLGVLSK 422
+DAPCSGLGVL +
Sbjct: 331 VDAPCSGLGVLRR 343
>gi|319892211|ref|YP_004149086.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
pseudintermedius HKU10-03]
gi|317161907|gb|ADV05450.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus
pseudintermedius HKU10-03]
Length = 433
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 99/323 (30%), Positives = 168/323 (52%), Gaps = 26/323 (8%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFY 159
+T L+ D L T++V GTI+ + LD+ + K F + ++ + ++L + Y
Sbjct: 30 LQTYPLNPADRGLYTELVYGTIKRKLTLDYYL-------KPFVKTKIKGWVRRLLWMSLY 82
Query: 160 EIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRA 218
+ + LD +P +A+++E V +AK GN VN ILR++ S PLP + +
Sbjct: 83 QFLYLDKVPTHALINEAVNIAKKRGGAQTGNTVNAILRQM------TSQPLPDITAI-KK 135
Query: 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL 278
Q L+ YS P W+++ W + G + + + N P +R +T + + QL
Sbjct: 136 QPERLSIQYSIPTWIIKHWLTHFG-ADTTEAIAANLLLPGTQTVRVNRTQITVDEAIEQL 194
Query: 279 NLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 338
+ H+D + V V+ + L ++GL ++QD+S+ V ++ QPG +++
Sbjct: 195 RAEGFDVQSDTHIDVCLHVSG--HGVMTSELFQKGLISIQDKSSMFVAEYMELQPGDAVL 252
Query: 339 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHADLRTF 397
D C+APGGK ++A L+GQG V A D++ ++++++ KLH IR + D
Sbjct: 253 DSCSAPGGKACHIAEILNGQGTVLATDVHAHKIQLIDHNIRKLHLTG--IRAMQHDATQP 310
Query: 398 ADNSTVKCDKVLLDAPCSGLGVL 420
D + DKVLLDAPCSGLGVL
Sbjct: 311 YDQ---QFDKVLLDAPCSGLGVL 330
>gi|116747600|ref|YP_844287.1| sun protein [Syntrophobacter fumaroxidans MPOB]
gi|116696664|gb|ABK15852.1| sun protein [Syntrophobacter fumaroxidans MPOB]
Length = 449
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 97/323 (30%), Positives = 166/323 (51%), Gaps = 12/323 (3%)
Query: 103 RTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIV 162
R + L++RD L+T++V G +RW+ LD I L ++P + +LR+ Y+I+
Sbjct: 32 RHERLEERDRALLTELVYGVLRWQGRLDWHIDQLSRTRP--EKIDPAVRILLRLALYQIL 89
Query: 163 KLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
LD +P +A V+E V +AK VNG+LR+ + + P E +
Sbjct: 90 MLDRIPDHAAVNEAVNMAKTTQPAYLVKFVNGVLREALRRRSRWIWPEAGEE-----PGK 144
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
+A +HP+W V R G EE + + NN+ +LR N+ K T D ++Q
Sbjct: 145 YIAVTTAHPIWYVERLLHEFGFEETLDICNANNTVAPMTLRVNALK--TSIDTILQWCAE 202
Query: 282 K-VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ E S + +R+ +++ + + ++GL VQDE++ +V +V P+ G+ ++D
Sbjct: 203 HGIDAEPSGVVPTAVRLSGLRRDLAETSIYRDGLVQVQDEASQIVSTLVAPRAGERVLDL 262
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
CA GGK+ ++ + +G V A+D + +L L + A+ Q +I+ ADL F+
Sbjct: 263 CAGFGGKSTHLGILMGDRGEVVAVDNSAWKLEELRKNAR-RQGLRIIKPRTADLFEFSPG 321
Query: 401 STVKCDKVLLDAPCSGLGVLSKT 423
+ D+VLLDAPCSG G L +
Sbjct: 322 TEDLFDRVLLDAPCSGFGTLRRN 344
>gi|308173537|ref|YP_003920242.1| RNA-binding protein [Bacillus amyloliquefaciens DSM 7]
gi|384159442|ref|YP_005541515.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens TA208]
gi|384164123|ref|YP_005545502.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus
amyloliquefaciens LL3]
gi|384168489|ref|YP_005549867.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens XH7]
gi|307606401|emb|CBI42772.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus
amyloliquefaciens DSM 7]
gi|328553530|gb|AEB24022.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens TA208]
gi|328911678|gb|AEB63274.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus
amyloliquefaciens LL3]
gi|341827768|gb|AEK89019.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens XH7]
Length = 447
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 98/357 (27%), Positives = 185/357 (51%), Gaps = 26/357 (7%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+T L D+D L+T++V GT++ + LD+++ + + ++P ++Q+LR+ Y++
Sbjct: 32 IKTNTLSDQDRGLLTELVYGTLQNKIALDYMLKPFI---RKPNKVKPWVIQLLRLSAYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK G + VNGILR L + + ++E
Sbjct: 89 EYLEKIPDRAAIHEAVEIAKKRGHKGIASFVNGILRSL---QREGAPSFAEIED----PV 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
L+T SHP W+V+ W + G E A K+ + P +LR N R + L+ ++
Sbjct: 142 LRLSTETSHPEWLVKEWVEAYGFETAEKICRIHLVPPKQTLRVN-RIKADKETLLNEMEN 200
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ E + I++ G ++ + G ++QDES+ LV +DP+PG++++D
Sbjct: 201 AGLEAEAGDLSPDAIKLLKG--SIASTEFFQNGQVSIQDESSMLVARALDPKPGETVLDA 258
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
CAAPGGK+ ++A + +G + ++D+++ +++++ E A+ + ++I D R D
Sbjct: 259 CAAPGGKSAHIAELMKNEGSLTSLDLHRHKVKLIQEGAERLGL-TIIDAQTMDARKAGDA 317
Query: 401 -STVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
+ D++L+DAPCSG GV+ R ++Y KT + L E + +L
Sbjct: 318 FGAERFDRILVDAPCSGFGVI----------RRKPDMKYTKTPEDSRRLSEIQLGIL 364
>gi|170289195|ref|YP_001739433.1| sun protein [Thermotoga sp. RQ2]
gi|170176698|gb|ACB09750.1| sun protein [Thermotoga sp. RQ2]
Length = 431
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 96/313 (30%), Positives = 159/313 (50%), Gaps = 26/313 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LDDRD R ++V G +R LD I L + + P + LR+G Y+++ ++
Sbjct: 34 LDDRDRRFFKELVWGVVRKEELLDWYINQLLKKK----DVPPAVRVALRMGAYQLLFMNS 89
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P YA V E V+L K LVN +LR+L ++P PK L
Sbjct: 90 VPDYAAVSETVKLVK---NENFKKLVNAVLRRL------RTVPEPK----------ELHL 130
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
+YSHP W+V W +L ++ +++M WN LR NS T+ +++ L
Sbjct: 131 VYSHPEWIVNYWRSFLPEKAVLRIMKWNQEPLPVMLRVNSL-AATKEEVIKILAEEGTEA 189
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
H + V+ + + ++ +GL +VQ ES+ LV ++ +PG ++D CAAPG
Sbjct: 190 IPGKHAPFSLIVRKLGVPMNDSRVINDGLASVQGESSQLVPFFMELRPGLRVLDTCAAPG 249
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405
GKT +A + QG + A+DI++ +++++ + AK +++S I T AD +
Sbjct: 250 GKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS-IETKIADAERLTEYVQDTF 308
Query: 406 DKVLLDAPCSGLG 418
D+VL+DAPC+ LG
Sbjct: 309 DRVLVDAPCTSLG 321
>gi|170758272|ref|YP_001787822.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum A3 str. Loch Maree]
gi|169405261|gb|ACA53672.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum A3 str. Loch Maree]
Length = 442
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 162/318 (50%), Gaps = 13/318 (4%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L D D L+T+IV GT++++ LD I + + +M+ ++ ILRI Y+I LD
Sbjct: 34 NLKDNDKALITEIVYGTLKYKETLD--IIIQSYLRNPIKTMDKNIVNILRITIYQIRYLD 91
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A V+E V ++K + LVNG+LR + N + R +
Sbjct: 92 KIPSFAAVNEAVEMSK-KISIKYSKLVNGVLRNYIRTYKNKKFY------DHRNNLEKFS 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
+YS+P W+++ + G E A K++ N P+ ++R N+ K + + +L
Sbjct: 145 FMYSYPKWLIKMFISQYGIEIAEKILKGLNERPNITVRVNNLK-IDYDEAFEKLGEYGYN 203
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
E E I++ G +N+ + L EG VQDESA LV ++ ++D C+AP
Sbjct: 204 IEEGYICPEAIQIIKG-KNIEKNPLFIEGNITVQDESAMLVAPSMELDEESIVLDLCSAP 262
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404
GGKT +++ ++ + VYA DI++ +L ++ AK + + I T D F K
Sbjct: 263 GGKTTHISEIMNNKSKVYAYDIHQNKLSLIEANAKRLGIKN-IETDVGDAAVFNKKLKEK 321
Query: 405 CDKVLLDAPCSGLGVLSK 422
+V++D PCSGLG++ K
Sbjct: 322 AYRVVMDVPCSGLGIIRK 339
>gi|406670660|ref|ZP_11077905.1| ribosomal RNA small subunit methyltransferase B [Facklamia hominis
CCUG 36813]
gi|405582176|gb|EKB56182.1| ribosomal RNA small subunit methyltransferase B [Facklamia hominis
CCUG 36813]
Length = 454
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 110/352 (31%), Positives = 182/352 (51%), Gaps = 30/352 (8%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-M 166
D RD+ L+ +V G+++ R+ LD LI +K +E + +LR+ +++V LD +
Sbjct: 47 DQRDIDLLVRVVYGSVQRRKTLDFLIEPYIQGKK----VESWVRSLLRMSVFQMVYLDRI 102
Query: 167 PPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI 226
P YA+VDE V +AK G G VNG+LR+ + PL +E + + LA
Sbjct: 103 PNYAIVDEAVTIAKTNGHQGLGKFVNGVLRQFM------RHPLRSIELI-KDPIKRLAIT 155
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHE 286
YS W+V ++K+L +E + + N +P S R N K +T+ + NL +P E
Sbjct: 156 YSIDDWLVEYFSKHLSEESLERFLASLNEEPLISARINPLK-ITQKQAIDWFNLRGMPVE 214
Query: 287 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 346
S +R + + I + L KEG +QDES+ LV + + + ++D CAAPGG
Sbjct: 215 GSPISSFGLRFEK--KTPIHSELFKEGALTIQDESSMLVAPLGQLKGHEKVLDVCAAPGG 272
Query: 347 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR-TIHA-DLRTFADNSTVK 404
K ++AS L G ++A+DI++ +L+IL + L ++N R T+HA D ++ +
Sbjct: 273 KATHIASLLDN-GHLWALDISQRKLKILAD--HLDRMNLSDRVTVHATDALKYSPDFQDL 329
Query: 405 CDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
D + LDAPCSG G++ + ++Y K + LC+ + LL
Sbjct: 330 FDVIYLDAPCSGTGLMRRK----------PEIKYRKDQTSIDSLCQIQDQLL 371
>gi|284802268|ref|YP_003414133.1| hypothetical protein LM5578_2024 [Listeria monocytogenes 08-5578]
gi|284995410|ref|YP_003417178.1| hypothetical protein LM5923_1975 [Listeria monocytogenes 08-5923]
gi|386054077|ref|YP_005971635.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes Finland 1998]
gi|404413901|ref|YP_006699488.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes
SLCC7179]
gi|284057830|gb|ADB68771.1| hypothetical protein LM5578_2024 [Listeria monocytogenes 08-5578]
gi|284060877|gb|ADB71816.1| hypothetical protein LM5923_1975 [Listeria monocytogenes 08-5923]
gi|346646728|gb|AEO39353.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes Finland 1998]
gi|404239600|emb|CBY61001.1| putative tRNA and rRNA cytosine-C5-methylase [Listeria
monocytogenes SLCC7179]
Length = 444
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 104/361 (28%), Positives = 186/361 (51%), Gaps = 34/361 (9%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGF 158
+ + L+ D L+T++V GT + + LD+ + F + EP + +LR+
Sbjct: 32 ALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLA-------PFLNKEPDNWVKNLLRMSV 84
Query: 159 YEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG-ND 216
Y++ LD +P +A+++E +AK G VNG+LR ++ +P ++ D
Sbjct: 85 YQLTYLDKVPEHAILNEAGDIAKNMGHQGVTKFVNGVLRNVI------RKGVPSIDAIKD 138
Query: 217 RAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM 276
Q A+ T S P W+ +RW G E+ ++ + P S+R N + + L+
Sbjct: 139 PVQKIAVET--SLPEWLAKRWADQYGIEQLREIGLAFLVAPHQSIRVNQTE-IPTEQLIK 195
Query: 277 QLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 336
+LN + + ++E + V+ G +V + K+G C++QDES+ L + + +
Sbjct: 196 ELNDQGITVTRNEFIEEALLVEKG--SVAETKAYKDGKCSIQDESSMLAAYALQLEDNLT 253
Query: 337 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396
++D CAAPGGKT ++A + G G+V+A+DI++ + ++++E AK Q+ + IRT H D RT
Sbjct: 254 VLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDEAAKRLQLLN-IRTAHLDART 312
Query: 397 FADNSTVKC-DKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLL 455
+ + D++L+DAPCSG GVL R ++Y KT + L E + +
Sbjct: 313 ASTMFEPETFDRILVDAPCSGFGVL----------RRKPDIKYAKTEKDIHKLAEIQLAI 362
Query: 456 L 456
L
Sbjct: 363 L 363
>gi|47096543|ref|ZP_00234133.1| sun protein [Listeria monocytogenes str. 1/2a F6854]
gi|254912380|ref|ZP_05262392.1| sun protein [Listeria monocytogenes J2818]
gi|254936707|ref|ZP_05268404.1| sun protein [Listeria monocytogenes F6900]
gi|386047475|ref|YP_005965807.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes J0161]
gi|47015075|gb|EAL06018.1| sun protein [Listeria monocytogenes serotype 1/2a str. F6854]
gi|258609304|gb|EEW21912.1| sun protein [Listeria monocytogenes F6900]
gi|293590362|gb|EFF98696.1| sun protein [Listeria monocytogenes J2818]
gi|345534466|gb|AEO03907.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes J0161]
gi|441471583|emb|CCQ21338.1| Ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes]
gi|441474715|emb|CCQ24469.1| Ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes N53-1]
Length = 444
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 104/361 (28%), Positives = 186/361 (51%), Gaps = 34/361 (9%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGF 158
+ + L+ D L+T++V GT + + LD+ + F + EP + +LR+
Sbjct: 32 ALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLA-------PFLNKEPDNWVKNLLRMSV 84
Query: 159 YEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG-ND 216
Y++ LD +P +A+++E +AK G VNG+LR ++ +P ++ D
Sbjct: 85 YQLTYLDKVPEHAILNEAGDIAKNMGHQGVTKFVNGVLRNVI------RKGVPSIDAIKD 138
Query: 217 RAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM 276
Q A+ T S P W+ +RW G E+ ++ + P S+R N + + L+
Sbjct: 139 PVQKIAVET--SLPEWLAKRWADQYGIEQLREIGLAFLVAPHQSIRVNQTE-IPTEQLIK 195
Query: 277 QLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 336
+LN + + ++E + V+ G +V + K+G C++QDES+ L + + +
Sbjct: 196 ELNDQGITVTRNEFIEEALLVEKG--SVAETKAYKDGKCSIQDESSMLAAYALQLEDNLT 253
Query: 337 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396
++D CAAPGGKT ++A + G G+V+A+DI++ + ++++E AK Q+ + IRT H D RT
Sbjct: 254 VLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDEAAKRLQLLN-IRTAHLDART 312
Query: 397 FADNSTVKC-DKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLL 455
+ + D++L+DAPCSG GVL R ++Y KT + L E + +
Sbjct: 313 ASTMFEPETFDRILVDAPCSGFGVL----------RRKPDIKYAKTEKDIHKLAEIQLTI 362
Query: 456 L 456
L
Sbjct: 363 L 363
>gi|347549218|ref|YP_004855546.1| putative RNA-binding Sun protein [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|346982289|emb|CBW86283.1| Putative RNA-binding Sun protein [Listeria ivanovii subsp. ivanovii
PAM 55]
Length = 446
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 109/360 (30%), Positives = 189/360 (52%), Gaps = 32/360 (8%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGF 158
+ + L+ D L+T++V GT + + LD+ + F + EP + +LR+
Sbjct: 32 ALKKQKLNSLDKGLLTELVYGTTQRKITLDYYLA-------PFLNKEPDNWVKNLLRMSV 84
Query: 159 YEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDR 217
Y++ LD +P +A+++E +AK G VNG+LR V+ K S+ L + D
Sbjct: 85 YQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRN-VIRKGVPSIDLIQ----DP 139
Query: 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQ 277
A+ T S P W+ RRW + G E+ ++ + P SLRAN + + L+ +
Sbjct: 140 VVKIAVET--SLPEWLARRWAEQYGIEQLREIGMAFLVAPHQSLRANQTE-IRIEQLMKE 196
Query: 278 LNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 337
LN + + + +DE + V+ G +V + K+G C++QDES+ L + + ++
Sbjct: 197 LNDQGITVKRNEFIDEALLVEKG--SVAETKAYKDGKCSIQDESSMLAAYALQLEDNLTV 254
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397
+D CAAPGGKT ++A + G G+V+A+DI++ + +++++ AK Q+ + IRT H D RT
Sbjct: 255 LDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQAAKRLQLLN-IRTAHLDARTA 313
Query: 398 ADNSTVKC-DKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
+ + D++L+DAPCSG GVL R ++Y KT + L E + +L
Sbjct: 314 STMFEPETFDRILVDAPCSGFGVL----------RRKPDIKYAKTEKDIHKLAEIQLAIL 363
>gi|16803862|ref|NP_465347.1| hypothetical protein lmo1822 [Listeria monocytogenes EGD-e]
gi|254829183|ref|ZP_05233870.1| sun protein [Listeria monocytogenes FSL N3-165]
gi|386044131|ref|YP_005962936.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes 10403S]
gi|386050799|ref|YP_005968790.1| sun protein [Listeria monocytogenes FSL R2-561]
gi|404284318|ref|YP_006685215.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes
SLCC2372]
gi|404411123|ref|YP_006696711.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes
SLCC5850]
gi|405758873|ref|YP_006688149.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes
SLCC2479]
gi|16411276|emb|CAC99900.1| lmo1822 [Listeria monocytogenes EGD-e]
gi|258601593|gb|EEW14918.1| sun protein [Listeria monocytogenes FSL N3-165]
gi|345537365|gb|AEO06805.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes 10403S]
gi|346424645|gb|AEO26170.1| sun protein [Listeria monocytogenes FSL R2-561]
gi|404230949|emb|CBY52353.1| putative tRNA and rRNA cytosine-C5-methylase [Listeria
monocytogenes SLCC5850]
gi|404233820|emb|CBY55223.1| putative tRNA and rRNA cytosine-C5-methylase [Listeria
monocytogenes SLCC2372]
gi|404236755|emb|CBY58157.1| putative tRNA and rRNA cytosine-C5-methylase [Listeria
monocytogenes SLCC2479]
Length = 444
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 104/361 (28%), Positives = 186/361 (51%), Gaps = 34/361 (9%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGF 158
+ + L+ D L+T++V GT + + LD+ + F + EP + +LR+
Sbjct: 32 ALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLA-------PFLNKEPDNWVKNLLRMSV 84
Query: 159 YEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG-ND 216
Y++ LD +P +A+++E +AK G VNG+LR ++ +P ++ D
Sbjct: 85 YQLTYLDKVPEHAILNEAGDIAKNMGHQGVTKFVNGVLRNVI------RKGVPSIDAIKD 138
Query: 217 RAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM 276
Q A+ T S P W+ +RW G E+ ++ + P S+R N + + L+
Sbjct: 139 PVQKIAVET--SLPEWLAKRWADQYGIEQLREIGLAFLVAPHQSIRVNQTE-IPTEQLIK 195
Query: 277 QLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 336
+LN + + ++E + V+ G +V + K+G C++QDES+ L + + +
Sbjct: 196 ELNDQGITVTRNEFIEEALLVEKG--SVAETKAYKDGKCSIQDESSMLAAYALQLEDNLT 253
Query: 337 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396
++D CAAPGGKT ++A + G G+V+A+DI++ + ++++E AK Q+ + IRT H D RT
Sbjct: 254 VLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDEAAKRLQLLN-IRTAHLDART 312
Query: 397 FADNSTVKC-DKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLL 455
+ + D++L+DAPCSG GVL R ++Y KT + L E + +
Sbjct: 313 ASTMFEPETFDRILVDAPCSGFGVL----------RRKPDIKYAKTEKDIHKLAEIQLAI 362
Query: 456 L 456
L
Sbjct: 363 L 363
>gi|339627428|ref|YP_004719071.1| ribosomal RNA small subunit methyltransferase b [Sulfobacillus
acidophilus TPY]
gi|379008196|ref|YP_005257647.1| sun protein [Sulfobacillus acidophilus DSM 10332]
gi|339285217|gb|AEJ39328.1| ribosomal RNA small subunit methyltransferase b [Sulfobacillus
acidophilus TPY]
gi|361054458|gb|AEW05975.1| sun protein [Sulfobacillus acidophilus DSM 10332]
Length = 449
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 105/323 (32%), Positives = 158/323 (48%), Gaps = 29/323 (8%)
Query: 103 RTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIV 162
R K L D LVT +V G R RR+LD I L +EP + ILR+ +++
Sbjct: 34 RVKGLSSADRALVTQLVYGVERQRRFLDAWIGQLRQ-----GPVEPKIRNILRLALFQLH 88
Query: 163 KLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
LD +P YA+ E V AK + P A +VN +LR+ R
Sbjct: 89 FLDRIPDYAIFHEAVEAAK-RVNPRAAPMVNAVLRR-----------------AQRQPPT 130
Query: 222 ALAT--IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
AL+T YSHP W+V RW G + I ++ +N P +LR + + +R ++ +L
Sbjct: 131 ALSTGEAYSHPDWLVDRWRSRYG-DYVIDILRRDNEIPPLTLRVDIAR-TSRETILDELR 188
Query: 280 LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 339
+ E S ++ E IRVK L + + GL VQDES+ LV +DP+PGQ+++D
Sbjct: 189 DRGLEAEPSPYVPEAIRVKGALW-LEDFPPFQSGLVMVQDESSMLVAWALDPKPGQTVLD 247
Query: 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 399
GGK L++ G+ + A+D++ RL + ++ +R D
Sbjct: 248 MAVGLGGKALHVLERTQGRLRLTAVDLSSERLARFQSVLRERGFDAEVRVEVGDASRLLV 307
Query: 400 NSTVKCDKVLLDAPCSGLGVLSK 422
+ T + D+VLLDAPCSGLGVL +
Sbjct: 308 HETERYDRVLLDAPCSGLGVLRR 330
>gi|16329552|ref|NP_440280.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803]
gi|383321293|ref|YP_005382146.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383324463|ref|YP_005385316.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383490347|ref|YP_005408023.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384435613|ref|YP_005650337.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803]
gi|451813711|ref|YP_007450163.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803]
gi|2500952|sp|P72943.1|RSMB_SYNY3 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|1652035|dbj|BAA16960.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803]
gi|339272645|dbj|BAK49132.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803]
gi|359270612|dbj|BAL28131.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359273783|dbj|BAL31301.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359276953|dbj|BAL34470.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|407957432|dbj|BAM50672.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803]
gi|451779680|gb|AGF50649.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803]
Length = 446
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 104/320 (32%), Positives = 157/320 (49%), Gaps = 17/320 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D R T++V G +R +R LD LI L ++ P L +I+++G Y++ LD
Sbjct: 35 LSPPDRRFCTELVYGVVRRQRTLDCLIEQL--GDRPIGKQPPDLRRIVQLGLYQLRYLDQ 92
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDN--NSLPLPKLEGNDRAQARAL 223
+P A V+ V LAK G +VNG+LR+ ++ N L K+ +L
Sbjct: 93 VPASAAVNTGVDLAKANGLKGLSKVVNGMLRRYQRAEEQGKNILDQEKI---------SL 143
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
YS P W++ + + G+ E L + N +PS LR N K +R ++ L L +
Sbjct: 144 GEQYSFPDWLMELFEQTWGKAETESLCAYFNQNPSLDLRINPLK-TSRVEVAQSLAELNL 202
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
L + +R+ + Q EG VQD SA V +++PQP ++I D CAA
Sbjct: 203 TTTAMAGLPQGLRLGGKTGAITQLPGFAEGWWTVQDASAQWVAQILNPQPEETIFDVCAA 262
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403
PGGKT ++A + QG +YA D + RL+ L T + + S I+ DL V
Sbjct: 263 PGGKTTHIAELMGDQGQIYAGDRHGWRLQKLAVTQQRLGLTS-IKIWEGDLTQPGVKPPV 321
Query: 404 K-CDKVLLDAPCSGLGVLSK 422
+ D+ LLD PCSGLG L +
Sbjct: 322 ELVDRALLDVPCSGLGTLHR 341
>gi|394993912|ref|ZP_10386651.1| 16S rRNA methyltransferase B [Bacillus sp. 916]
gi|393805236|gb|EJD66616.1| 16S rRNA methyltransferase B [Bacillus sp. 916]
Length = 447
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 92/324 (28%), Positives = 175/324 (54%), Gaps = 18/324 (5%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLI-CLLCHDEKTFSSMEPLLLQILRIGFYE 160
+T L D+D L+T++V GT++ + LD+++ +C K ++P ++Q+LR+ Y+
Sbjct: 32 IKTNTLSDQDRGLLTELVYGTLQNKIALDYMLKPFICKPNK----VKPWVIQLLRLSAYQ 87
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
+ L+ +P A + E V +AK G + VNGILR L + + ++E
Sbjct: 88 MEYLEKIPDRAAIHEAVEIAKKRGHKGIASFVNGILRSL---QREGAPSFAEIED----P 140
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
L+T SHP W+V+ W + G E A ++ + P +LR N K R ++ ++
Sbjct: 141 VLRLSTETSHPEWLVKEWVEAYGFEAAEQICRIHLIPPKQTLRVNHIKS-DRETVLNEME 199
Query: 280 LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 339
+ E + I++ G ++ + G ++QDES+ LV +DP+PG++++D
Sbjct: 200 NAGLEAEAGDLSPDAIKLLKG--SIANTAFFQNGRVSIQDESSMLVARALDPKPGETVLD 257
Query: 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 399
CAAPGGK+ ++A + +G + ++D+++ +++++ E A+ + ++I D R +
Sbjct: 258 ACAAPGGKSAHIAELMENEGSLTSLDLHRHKVKLIKEGAERLGL-TIIDAQTMDARKAGE 316
Query: 400 -NSTVKCDKVLLDAPCSGLGVLSK 422
+ D+VL+DAPCSG GV+ +
Sbjct: 317 VFGAERFDRVLVDAPCSGFGVIRR 340
>gi|299535921|ref|ZP_07049241.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus
fusiformis ZC1]
gi|424738860|ref|ZP_18167289.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus
fusiformis ZB2]
gi|298728673|gb|EFI69228.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus
fusiformis ZC1]
gi|422947344|gb|EKU41741.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus
fusiformis ZB2]
Length = 453
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 95/322 (29%), Positives = 171/322 (53%), Gaps = 26/322 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
++ +D L+T+I GT++++ LD+ + SS++ + +LRI Y+I L
Sbjct: 44 IEAKDRALLTEITYGTLQYKMTLDYYLEPFIR-----SSIDHWVRWLLRISLYQIHYLTR 98
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKL----VLLKDNNSLPLPKLEGNDRAQAR 221
+PP+A V+E V +AK G ++VNGILR + V D+ + P+ +L
Sbjct: 99 IPPHAAVNEAVEIAKRRGHRGIASMVNGILRSVLRSGVPSTDDIADPIERL--------- 149
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
++ T SHP+W+V+R+ G E A +++ NN P ++R N+ K + + +L
Sbjct: 150 SIET--SHPMWLVQRFVDNYGLEVATEMLHENNRPPVQTVRVNTTKATVK-QAIAELEAE 206
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
+ S + E + + G +A KEG+ +QDES+ + V++P PG ++D C
Sbjct: 207 GLTAIQSDVIPECLYITNGQPARTKA--FKEGMITIQDESSMIPANVLNPSPGMRVLDMC 264
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN- 400
AAPGGKT ++A + +G + A D++ +L +++ + ++ ++ T D R +
Sbjct: 265 AAPGGKTTHIAEIMQNEGSILATDLHPHKLDLIDHNTERLGLD-IVETAPIDGRKAPEFL 323
Query: 401 STVKCDKVLLDAPCSGLGVLSK 422
D +L+DAPCSGLGV+ +
Sbjct: 324 QAASFDAILVDAPCSGLGVMRR 345
>gi|339624615|ref|ZP_08660404.1| 16S rRNA methyltransferase B [Fructobacillus fructosus KCTC 3544]
Length = 448
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 109/362 (30%), Positives = 176/362 (48%), Gaps = 46/362 (12%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D+D L+T +V GTI++R L++ + +K MEP L ++L Y+ KLD
Sbjct: 41 LKDQDKGLLTSLVYGTIQYRLLLEYWLAPFVKGKK----MEPWLKELLLTALYQWQKLDR 96
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+ +E + +AK GA V IL + D + LP P+ +D + L+
Sbjct: 97 IPKHALFNETIEVAKTLGNVGAAKFVTAILHNM----DRHGLPDPEKIQDD---LKRLSI 149
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
YS PVW+V +G E+ ++ N P S+R N+ + T+A + QL
Sbjct: 150 TYSVPVWLVEELQDQVGTEKTASILQSLNHAPEQSVRVNTVRA-TKALVRKQLE------ 202
Query: 286 ELSLHLDEFIRVKTGL----------QNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG- 334
DE V+ G +V + +EGL VQDESA L V + G
Sbjct: 203 ------DEGYTVRDGQLATDALIVSGGHVASSKAYQEGLLTVQDESAMLPVEAMHIDQGV 256
Query: 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 394
+S++D AAPGGKT +A L V A+DI++ +++++ + A + +R + D
Sbjct: 257 RSVLDAAAAPGGKTTQIAQDLPEGAFVTALDIHRHKVQLIAQNAARLGLADRVRAMEMDA 316
Query: 395 RTFADNSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYL 454
R + + D++L+DAPCSGLG+L R +RY KT ++HL + +
Sbjct: 317 REIPEKLAEEFDRILVDAPCSGLGLL----------RRKPEIRYDKTMDDVRHLSKLQLA 366
Query: 455 LL 456
+L
Sbjct: 367 IL 368
>gi|315303726|ref|ZP_07874237.1| ribosomal RNA small subunit methyltransferase B [Listeria ivanovii
FSL F6-596]
gi|313627903|gb|EFR96525.1| ribosomal RNA small subunit methyltransferase B [Listeria ivanovii
FSL F6-596]
Length = 446
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 107/360 (29%), Positives = 188/360 (52%), Gaps = 32/360 (8%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGF 158
+ + L+ D L+T++V GT + + LD+ + F + EP + +LR+
Sbjct: 32 ALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLA-------PFLNKEPDNWVKNLLRMSV 84
Query: 159 YEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDR 217
Y++ LD +P +A+++E +AK G VNG+LR V+ K S+ L + D
Sbjct: 85 YQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRN-VIRKGVPSIDLIE----DP 139
Query: 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQ 277
+ A+ T S P W+ RRW + G E+ ++ + P S+R N + + L+ +
Sbjct: 140 VKKIAVET--SLPYWLARRWAEQYGIEQLREIGMAFLVAPHQSIRVNQTE-IRTEQLIKE 196
Query: 278 LNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 337
LN + + +DE + V+ G +V + K+G C++QDES+ L + + ++
Sbjct: 197 LNDQGITVTRNEFIDEALIVEKG--SVAETKAYKDGKCSIQDESSMLAAYALQLEDNLTV 254
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397
+D CAAPGGKT ++A + G G+V+A+DI++ + +++++ AK Q+ + IRT H D RT
Sbjct: 255 LDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQAAKRLQLLN-IRTAHLDARTA 313
Query: 398 ADNSTVKC-DKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
+ + D++L+DAPCSG GVL R ++Y KT + L E + +L
Sbjct: 314 STMFEPETFDRILVDAPCSGFGVL----------RRKPDIKYAKTEKDIHKLAEIQLAIL 363
>gi|451818110|ref|YP_007454311.1| ribosomal RNA small subunit methyltransferase B [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451784089|gb|AGF55057.1| ribosomal RNA small subunit methyltransferase B [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 438
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 98/318 (30%), Positives = 162/318 (50%), Gaps = 16/318 (5%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L+D+D L+T+IV G +R ++ LD +I D K M+ +L ILR+ Y++ LD
Sbjct: 33 ELNDKDKALLTEIVYGVLRRKKTLDIIISNFVKDIKL---MDRNILNILRVAIYQMNFLD 89
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P YA +E V AK + LVNGILR D+ +P K++ A
Sbjct: 90 KIPSYAACNEAVEEAK-EISENDSKLVNGILRNFTKNPDDIEVPGNKID--------EYA 140
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
+S WM+R K G+ + K+M N+ P S+R N K ++ +L L+
Sbjct: 141 YKFSFEPWMIRLLIKQYGEALSKKIMSGLNTIPQVSVRVNELKA-DYDEVFEELEALEYD 199
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
E E I +K G +++ L EG VQDESA ++ +++ + +++D C+AP
Sbjct: 200 VEEGAVCPEAICIKGG-KSIENNPLFNEGKITVQDESAMIIAPLLELEENMTVIDLCSAP 258
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404
GGKT ++A L G V A DI++ +L ++ E + + +V ++ D
Sbjct: 259 GGKTTHIAEILQNTGKVLAFDIHESKLGLIKENCERLGITNVEVNVN-DATKLNPELVSS 317
Query: 405 CDKVLLDAPCSGLGVLSK 422
D++L+D PCSG+G++ K
Sbjct: 318 SDRILIDVPCSGIGIIRK 335
>gi|428771628|ref|YP_007163418.1| sun protein [Cyanobacterium aponinum PCC 10605]
gi|428685907|gb|AFZ55374.1| sun protein [Cyanobacterium aponinum PCC 10605]
Length = 455
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 107/323 (33%), Positives = 161/323 (49%), Gaps = 18/323 (5%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQI-LRIGFY 159
G +K DR LV+++V G +R +R LD +I + +S +PL L+I L++G Y
Sbjct: 40 GLHSKSFQDR--ALVSELVYGIVRRKRTLDSIINQFASKK---ASQQPLKLRIILQLGLY 94
Query: 160 EIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRK-LVLLKDNNSLPLPKLEGNDR 217
+I LD +P A V+ +V LAK +VNGILR L D + L LP
Sbjct: 95 QIRYLDKIPASAAVNTSVELAKKNGLSKISGVVNGILRSYLRQSADGDPLILPS------ 148
Query: 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQ 277
+ L YS P W+V+ + ++ L+ W N+ LR N K + R +L +
Sbjct: 149 DKIAYLGVKYSFPDWIVKLFIDQFSYQKTEALLDWFNNTHHIDLRTNIIK-INRENLQNK 207
Query: 278 LNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 337
L L L + +R+ + N+ K+GL +QD SA LV +++PQ G++I
Sbjct: 208 L-LENNIETFLLKEAQGLRLSKAVGNIGNLEEFKQGLFTIQDASAQLVTHLLNPQAGETI 266
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397
+D CAAPGGKT ++A + +G V AID RL + E A + + I D
Sbjct: 267 IDACAAPGGKTTHIAELMGDKGKVIAIDTYAKRLEKIKENATRLGL-TCIEVKEGDSSEL 325
Query: 398 ADNSTVKCDKVLLDAPCSGLGVL 420
+ + D+VL+D PCSGLG L
Sbjct: 326 TEWEN-QADRVLVDVPCSGLGTL 347
>gi|225377868|ref|ZP_03755089.1| hypothetical protein ROSEINA2194_03527 [Roseburia inulinivorans DSM
16841]
gi|225210306|gb|EEG92660.1| hypothetical protein ROSEINA2194_03527 [Roseburia inulinivorans DSM
16841]
Length = 440
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 98/324 (30%), Positives = 169/324 (52%), Gaps = 20/324 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L+ ++ +T + GTI++ LD++I + + M+P++ ILR+ Y++ +D
Sbjct: 39 LEKKERAFITRVSEGTIQYMIELDYIINRFS--KVKVNKMKPVIRNILRMSVYQLKYMDS 96
Query: 166 MPPYAVVDENVRLAKVALRPGAGNL---VNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
+P AV +E V+LAK R G G+L VNG+LR + ++ +S+ P + Q +
Sbjct: 97 VPDSAVCNEAVKLAK---RKGFGSLSGFVNGVLRNIS--RNLSSITYP---DGQKDQIQY 148
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
L+ YS P W+V++W G E + ++ + ++R N K +T L M+L
Sbjct: 149 LSVHYSMPEWIVKQWINDYGMERTVSVLQAFLQEAPVTIRTNLLK-ITPEALEMRLKEEG 207
Query: 283 VPHELSLHLD----EFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 338
V E + D + + +G ++ +EGL VQD S+ +V VDP I+
Sbjct: 208 VTTEKIVCADMPELNYAFMISGFDHLNALESFREGLFYVQDVSSMMVAETVDPVKDSYIM 267
Query: 339 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398
D CAAPGGK++++A L G G+V A D+ + ++ + HQ+++ +R + D
Sbjct: 268 DVCAAPGGKSVHLAEKLGGTGMVEARDLTDYKTDLIRQNIARHQLSN-MRAVQMDATVLD 326
Query: 399 DNSTVKCDKVLLDAPCSGLGVLSK 422
+ S K D V+ D PCSGLGV+ +
Sbjct: 327 EASIGKADVVIADLPCSGLGVMRR 350
>gi|359411381|ref|ZP_09203846.1| sun protein [Clostridium sp. DL-VIII]
gi|357170265|gb|EHI98439.1| sun protein [Clostridium sp. DL-VIII]
Length = 438
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 102/319 (31%), Positives = 167/319 (52%), Gaps = 18/319 (5%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L+D+D L+T+IV G +R ++ LD +I D K M+ +L ILR+ Y++ LD
Sbjct: 33 ELNDKDKALLTEIVYGVLRRKKTLDIIISNFVKDIKL---MKKDILNILRVAVYQMNFLD 89
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P YA +E V AK + LVNGILR D + K++ A
Sbjct: 90 KVPSYAACNEAVEEAK-EISENDSKLVNGILRSFTKNPDEIEVVGNKID--------EYA 140
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
+S WM+R K G+ + K+M+ N+ P S+R N K ++ +L L+
Sbjct: 141 YKFSFEPWMIRLLIKQYGENLSKKIMLGLNAIPQVSVRVNEIKA-DYDEVFEELEKLEYD 199
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
E + E I +K G +++ L KEG VQDESA +V +++ + G ++D C+AP
Sbjct: 200 VEEGVICPEAICIKGG-KSIESNPLFKEGKITVQDESAMVVAPLLELEEGMKVIDLCSAP 258
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404
GGKT ++A L G V A DI++ +L ++ E + + +V I+ + T + V+
Sbjct: 259 GGKTTHIAEMLQNTGKVLAFDIHESKLGLIKENCERLGITNV--EINTNDATKLNPELVE 316
Query: 405 -CDKVLLDAPCSGLGVLSK 422
D++L+D PCSG+G++ K
Sbjct: 317 SSDRILIDVPCSGIGIIRK 335
>gi|226224425|ref|YP_002758532.1| RNA-binding Sun protein [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|386732562|ref|YP_006206058.1| 16S rRNA methyltransferase B [Listeria monocytogenes 07PF0776]
gi|406704606|ref|YP_006754960.1| tRNA and rRNA cytosine-C5-methylase, putative [Listeria
monocytogenes L312]
gi|225876887|emb|CAS05596.1| Putative RNA-binding Sun protein [Listeria monocytogenes serotype
4b str. CLIP 80459]
gi|384391320|gb|AFH80390.1| 16S rRNA methyltransferase B [Listeria monocytogenes 07PF0776]
gi|406361636|emb|CBY67909.1| tRNA and rRNA cytosine-C5-methylase, putative [Listeria
monocytogenes L312]
Length = 444
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 104/361 (28%), Positives = 187/361 (51%), Gaps = 34/361 (9%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGF 158
+ + L+ D L+T++V GT + + LD+ + F + EP + +LR+
Sbjct: 32 ALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLA-------PFLNKEPDNWVKNLLRMSV 84
Query: 159 YEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG-ND 216
Y++ LD +P +A+++E +AK G VNG+LR ++ +P ++ D
Sbjct: 85 YQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRNVI------RKGVPSIDAIKD 138
Query: 217 RAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM 276
Q A+ T S P W+ +RWT G E+ ++ + P S+R N + + L+
Sbjct: 139 PVQKIAVET--SLPEWLAKRWTDQYGIEKLREIGLAFLVAPHQSIRVNQTE-IPTEQLIK 195
Query: 277 QLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 336
+LN + + ++E + V+ G +V + K+G C++QDES+ L + + +
Sbjct: 196 ELNDQGITVTRNEFIEEALLVEKG--SVAETKAYKDGKCSIQDESSMLAAYALQLEDNLT 253
Query: 337 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396
++D CAAPGGKT ++A + G G+V+A+DI++ + +++++ AK Q+ + IRT H D RT
Sbjct: 254 VLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQAAKRLQLLN-IRTAHLDART 312
Query: 397 FADNSTVKC-DKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLL 455
+ + D++L+DAPCSG GVL R ++Y KT + L E + +
Sbjct: 313 ASTMFEPETFDRILVDAPCSGFGVL----------RRKPDIKYAKTEKDIHKLAEIQLAI 362
Query: 456 L 456
L
Sbjct: 363 L 363
>gi|116514363|ref|YP_813269.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|116093678|gb|ABJ58831.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
Length = 438
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 120/386 (31%), Positives = 186/386 (48%), Gaps = 38/386 (9%)
Query: 76 AFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICL 135
A A L+ +GS N + + L D + RL T++V GTI+++ YL++ +
Sbjct: 9 ALATLMKVINQGSYSN----ISLNHALKAAKLPDEESRLATNLVYGTIQYQLYLEYQLKD 64
Query: 136 LCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGN--LVN 192
L ++PLLL + Y+I LD +P AV+DE +LAKV RP + LVN
Sbjct: 65 LVKARLREPYIKPLLL----MSAYQIFFLDKVPNRAVLDEANKLAKVYGRPKSSGYRLVN 120
Query: 193 GILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVW 252
GILR L L+ LP ++ L+ S P+W+ + G+ A K+M
Sbjct: 121 GILRSL--LRRGEVLP-------EKDAPDYLSVKCSMPLWLSDYFVANWGKSRAEKIMAS 171
Query: 253 NNSDPSFSLRANSRKGVTRADLVMQLNLLK-VPHELSLHLDEFIRVKTGLQNVIQAGLLK 311
NS +R ++ R +V L+ P E L + + G ++ K
Sbjct: 172 FNSKAKNEIRISALADEKR--VVRDLDRAHFAPQESPLASRSYALSRGG---IVMTDFFK 226
Query: 312 EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRL 371
+G VQDE+A LV D + + +D C+APGGKT+ +A L G V A+DI++ +L
Sbjct: 227 DGEVTVQDEAASLVAEAFDFKGNEQALDACSAPGGKTIQIAEQLP-DGQVTALDIHEKKL 285
Query: 372 RILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSGLGVLSKTCVGIGDW 430
R++ E A +V ++ D R + S + DK+L+DAPCSGLG+L
Sbjct: 286 RLVKENAARMRVADRVKVKALDARKAREYFSGQEFDKILIDAPCSGLGLL---------- 335
Query: 431 RIWKSLRYCKTSFLMQHLCETKYLLL 456
R +RY KT+ + HL E + +L
Sbjct: 336 RRKPEIRYTKTAEDISHLAEIQLDIL 361
>gi|33860983|ref|NP_892544.1| Sun protein (Fmu protein) [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
gi|33639715|emb|CAE18885.1| Sun protein (Fmu protein) [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
Length = 437
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 99/333 (29%), Positives = 169/333 (50%), Gaps = 27/333 (8%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEK-TFSSMEPLLLQILRIGFYE 160
+ + + D+ +T++ G IR+R++LD I H K + + P L +L IG Y+
Sbjct: 32 LKNYEFNSLDIAFITELSFGCIRYRKFLDLWID---HTSKLSHTKQPPKLRWLLHIGLYQ 88
Query: 161 IVKLDMPPY-AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
++K+D P+ A + V +AK G VN ILR V + +P K+ + +
Sbjct: 89 LLKMDKIPFSAAISSTVEVAKKTDLKGLAGTVNAILRNTVRHIEKEHVP--KISSD---E 143
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
L+++ S P+W+V+ ++G +EA + N PS LR NS K DL LN
Sbjct: 144 IERLSSLESLPIWLVKEIVNWVGIKEAKNIAKAFNKKPSIDLRINSLK----TDLNKFLN 199
Query: 280 LLKVPHELSLHLDEFIRVKTGL------QNVIQAGLLKEGLCAVQDESAGLVVAVVDPQP 333
L E +++ ++K G+ +++ + +GL VQD S+ V +++P
Sbjct: 200 ELA---ECNINATAISQLKNGIALNSNPRSIKKLPGYSDGLWVVQDRSSQWVAPLLNPMK 256
Query: 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD 393
G+ I+D C+APG KT ++A + + A+D ++ RL+IL + + SV +T+ AD
Sbjct: 257 GEKILDACSAPGSKTTHLAQLANDDAEILAVDRSEKRLKILQSNLERLNIKSV-KTLKAD 315
Query: 394 LRTFAD---NSTVKCDKVLLDAPCSGLGVLSKT 423
D N DK+L+DAPCSG+G L++
Sbjct: 316 ATNLVDIQPNLISYFDKILIDAPCSGIGTLARN 348
>gi|385816025|ref|YP_005852416.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
gi|325126062|gb|ADY85392.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
Length = 438
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 120/386 (31%), Positives = 186/386 (48%), Gaps = 38/386 (9%)
Query: 76 AFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICL 135
A A L+ +GS N + + L D + RL T++V GTI+++ YL++ +
Sbjct: 9 ALATLMKVINQGSYSN----ISLNHALKAAKLPDEESRLATNLVYGTIQYQLYLEYQLKD 64
Query: 136 LCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGN--LVN 192
L ++PLLL + Y+I LD +P AV+DE +LAKV RP + LVN
Sbjct: 65 LVKARLREPYIKPLLL----MSAYQIFFLDKVPNRAVLDEANKLAKVYGRPKSSGYRLVN 120
Query: 193 GILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVW 252
GILR L L+ LP ++ L+ S P+W+ + G+ A K+M
Sbjct: 121 GILRSL--LRRGEVLP-------EKDAPDYLSVKCSMPLWLSDYFVANWGKSRAEKIMAS 171
Query: 253 NNSDPSFSLRANSRKGVTRADLVMQLNLLK-VPHELSLHLDEFIRVKTGLQNVIQAGLLK 311
NS +R ++ R +V L+ P E L + + G ++ K
Sbjct: 172 FNSKAKNEIRISALADEKR--VVRDLDRAHFAPQESPLASRSYALSRGG---IVMTDFFK 226
Query: 312 EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRL 371
+G VQDE+A LV D + + +D C+APGGKT+ +A L G V A+DI++ +L
Sbjct: 227 DGEVTVQDEAASLVAEAFDFKGNEQALDACSAPGGKTIQIAEQLP-DGQVTALDIHEKKL 285
Query: 372 RILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSGLGVLSKTCVGIGDW 430
R++ E A +V ++ D R + S + DK+L+DAPCSGLG+L
Sbjct: 286 RLVKENAARMRVADRVKVKALDARKAREYFSGQEFDKILIDAPCSGLGLL---------- 335
Query: 431 RIWKSLRYCKTSFLMQHLCETKYLLL 456
R +RY KT+ + HL E + +L
Sbjct: 336 RRKPEIRYTKTAEDISHLAEIQLDIL 361
>gi|386319520|ref|YP_006015683.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
pseudintermedius ED99]
gi|323464691|gb|ADX76844.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
pseudintermedius ED99]
Length = 433
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 99/323 (30%), Positives = 167/323 (51%), Gaps = 26/323 (8%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFY 159
+T L+ D L T++V GTI+ + LD+ + K F + ++ + ++L + Y
Sbjct: 30 LQTYPLNPADRGLYTELVYGTIKRKLTLDYYL-------KPFVKTKIKGWVRRLLWMSLY 82
Query: 160 EIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRA 218
+ + LD +P +A+++E V +AK GN VN ILR++ S PLP + +
Sbjct: 83 QFLYLDKVPTHALINEAVNIAKKRGGAQTGNTVNAILRQM------TSQPLPDITAI-KK 135
Query: 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL 278
Q L+ YS P W+++ W + G + + + N P +R +T + + QL
Sbjct: 136 QPERLSIQYSIPTWIIKHWLTHFG-ADTTEAIAANLLLPGTQTVRVNRTQITVDEAIEQL 194
Query: 279 NLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 338
+ H+D + V V+ + L ++GL ++QD+S+ V ++ QPG +++
Sbjct: 195 RAEGFDVQSDTHIDVCLHVSG--HGVMTSELFQKGLISIQDKSSMFVAEYMELQPGDAVL 252
Query: 339 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHADLRTF 397
D C+APGGK +MA L+ QG V A D++ ++++++ KLH IR + D
Sbjct: 253 DSCSAPGGKACHMAEILNDQGTVLATDVHAHKIQLIDHNIRKLHLTG--IRAMQHDATQP 310
Query: 398 ADNSTVKCDKVLLDAPCSGLGVL 420
D + DKVLLDAPCSGLGVL
Sbjct: 311 YDQ---QFDKVLLDAPCSGLGVL 330
>gi|385264700|ref|ZP_10042787.1| RsmB [Bacillus sp. 5B6]
gi|385149196|gb|EIF13133.1| RsmB [Bacillus sp. 5B6]
Length = 447
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 185/357 (51%), Gaps = 26/357 (7%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+T L D+D L+T++V GT++ + LD+++ + + ++P ++Q+LR+ Y++
Sbjct: 32 IKTNTLSDQDRGLLTELVYGTLQNKIALDYMLKPFI---RKPNKVKPWVIQLLRLSAYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK G + VNGILR L + + ++E
Sbjct: 89 EYLEKIPDRAAIHEAVEIAKKRGHKGIASFVNGILRSL---QREGAPSFAEIED----PV 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
L+T SHP W+V+ W + G E A K+ + P +LR N K R ++ ++
Sbjct: 142 LRLSTETSHPEWLVKEWVEAYGFEAAEKICRIHLIPPKQTLRVNHIKS-DRETVLNEMEK 200
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ E + I++ G ++ + G ++QDES+ LV +DP+PG++++D
Sbjct: 201 AGLEAEAGDLSPDAIKLLKG--SIANTAFFQNGRVSIQDESSMLVARALDPKPGETVLDA 258
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
CAAPGGK+ ++A + +G + ++D+++ +++++ E A+ + ++I D R +
Sbjct: 259 CAAPGGKSAHIAELMQNEGSLTSLDLHRHKVKLIKEGAERLGL-TIIDAQTMDARKAGEA 317
Query: 401 -STVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
+ D++L+DAPCSG GV+ R ++Y KT + L E + +L
Sbjct: 318 FGAERFDRILVDAPCSGFGVI----------RRKPDMKYTKTPEDSRRLSEIQLGIL 364
>gi|415886521|ref|ZP_11548301.1| sun protein [Bacillus methanolicus MGA3]
gi|387587208|gb|EIJ79531.1| sun protein [Bacillus methanolicus MGA3]
Length = 446
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 108/344 (31%), Positives = 179/344 (52%), Gaps = 38/344 (11%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGFYEIVK 163
++D +D+ L+T++ GT++ + LD+ + K F +P +L +LR+ Y++V
Sbjct: 37 EIDQKDVGLLTELTYGTLQRQMTLDYFL-------KPFIKKKPDRWVLHLLRLTLYQMVY 89
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG-NDRAQAR 221
LD +P A + E V +AK G ++VNG+LR + LP LE ND +
Sbjct: 90 LDKIPDRAAIYEAVEIAKKRGHKGIASMVNGVLRNI------QRQGLPPLENINDPIERL 143
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
A+ T SHP W+V+RWT G E+ K+ N + P + R N K ++R + + L
Sbjct: 144 AIET--SHPEWLVKRWTDQFGFEKTKKMCETNLTPPFQTARVNVTK-ISRDECLQLLENE 200
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
E S + E I+ G N+ + K GL +QDES+ LV ++ + +I+D
Sbjct: 201 GFRVEASSIIPEAIKCLKG--NLATSNAFKNGLITIQDESSMLVAYALNIEENFTILDAA 258
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHADL--RTFA 398
AAPGGK+ ++A L+ G V ++D+++ +++++ A +L N ++ + + L FA
Sbjct: 259 AAPGGKSTHIAEKLNQTGKVISLDLHEHKVKLIGRAAERLGLDNIELKVLDSRLAPEHFA 318
Query: 399 DNSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTS 442
S D++LLDAPCSGLGV+ R L+Y KT
Sbjct: 319 AES---FDRILLDAPCSGLGVM----------RRKPDLKYTKTE 349
>gi|160933495|ref|ZP_02080883.1| hypothetical protein CLOLEP_02341 [Clostridium leptum DSM 753]
gi|156867372|gb|EDO60744.1| ribosomal RNA small subunit methyltransferase B [Clostridium leptum
DSM 753]
Length = 446
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 106/365 (29%), Positives = 170/365 (46%), Gaps = 41/365 (11%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYE 160
G LD RD + + G + R LD+ I + + S M + +ILR+GFY+
Sbjct: 32 GLAASGLDGRDAAFASALFYGVLERRITLDYQISR--YSKMPLSQMAAPVREILRLGFYQ 89
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
++ +D +P A V+E+V+L + + A VNGILR + +D LP +D
Sbjct: 90 LLYMDKVPQSAAVNESVKLTRAVKKDKASGFVNGILRSFI--RDGCPCRLPAETADD--- 144
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
L Y+ P W++ W G+E A++L+ P ++R NS K TR L +L
Sbjct: 145 --YLMVKYACPQWIIDLWITSYGRERALELVENLTGRPPLAVRVNSCK-TTREALTERLK 201
Query: 280 LLKVPHELSLHLDEFIRVKTGLQ-----NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 334
E + E V+ L ++ ++G VQD ++ L + P+PG
Sbjct: 202 ------EEGVETKEVPGVEQALTLERSGSIESLSSFQDGFFHVQDLASQLCCQALSPKPG 255
Query: 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK---LHQVNSVIRTIH 391
+ + D CAAPGGKT MA + QG + + D+ +++++ + AK L VN+ IR
Sbjct: 256 ERVYDVCAAPGGKTFTMAELMENQGELSSFDLYPAKVKLIQQGAKRLGLSVVNARIRDA- 314
Query: 392 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCET 451
+ DKVL D PCSGLG++ R +RY K ++ L +
Sbjct: 315 ----AHPEEMLPPGDKVLCDVPCSGLGII----------RRKPEIRY-KNKNMLDSLPDL 359
Query: 452 KYLLL 456
+YL+L
Sbjct: 360 QYLIL 364
>gi|452855521|ref|YP_007497204.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
gi|452079781|emb|CCP21538.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
Length = 446
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 98/357 (27%), Positives = 185/357 (51%), Gaps = 26/357 (7%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+T L D+D L+T++V GT++ + LD+++ + + ++P ++Q+LR+ Y++
Sbjct: 31 IKTNTLSDQDRGLLTELVYGTLQNKIALDYMLKPFI---RKPNKVKPWVIQLLRLSAYQM 87
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK G + VNGILR L + + ++E
Sbjct: 88 EYLEKIPDRAAIHEAVEIAKKRGHKGIASFVNGILRSL---QREGAPSFAEIED----PV 140
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
L+T SHP W+V+ W + G E A K+ + P +LR N K R ++ ++
Sbjct: 141 LRLSTETSHPEWLVKEWVEAYGFEAAEKICRIHLIPPKQTLRVNHIKS-DRDTVLNEMEN 199
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ E + I++ G ++ + G ++QDES+ LV +DP+PG++++D
Sbjct: 200 AGLEAEAGDLSPDAIKLLKG--SIANTAFFQNGRVSIQDESSMLVARALDPKPGETVLDA 257
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
CAAPGGK+ ++A + +G + ++D+++ +++++ E A+ + ++I D R +
Sbjct: 258 CAAPGGKSAHIAELMENEGSLTSLDLHRHKVKLIKEGAERLGL-TIIDAQTMDARKAGEA 316
Query: 401 -STVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
+ D+VL+DAPCSG GV+ R ++Y KT + L E + +L
Sbjct: 317 FGAERFDRVLVDAPCSGFGVI----------RRKPDMKYTKTPEDSRRLAEIQLGIL 363
>gi|418028830|ref|ZP_12667379.1| Methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1632]
gi|354691167|gb|EHE91105.1| Methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1632]
Length = 431
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 120/386 (31%), Positives = 186/386 (48%), Gaps = 38/386 (9%)
Query: 76 AFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICL 135
A A L+ +GS N + + L D + RL T++V GTI+++ YL++ +
Sbjct: 2 ALATLMKVINQGSYSN----ISLNHALKAAKLPDEESRLATNLVYGTIQYQLYLEYQLKD 57
Query: 136 LCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGN--LVN 192
L ++PLLL + Y+I LD +P AV+DE +LAKV RP + LVN
Sbjct: 58 LVKARLREPYIKPLLL----MSAYQIFFLDKVPNRAVLDEANKLAKVYGRPKSSGYRLVN 113
Query: 193 GILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVW 252
GILR L L+ LP ++ L+ S P+W+ + G+ A K+M
Sbjct: 114 GILRSL--LRRGEVLP-------EKDAPDYLSVKCSMPLWLSDYFVANWGKSRAEKIMAS 164
Query: 253 NNSDPSFSLRANSRKGVTRADLVMQLNLLK-VPHELSLHLDEFIRVKTGLQNVIQAGLLK 311
NS +R ++ R +V L+ P E L + + G ++ K
Sbjct: 165 FNSKAKNEIRISALADEKR--VVRDLDRAHFAPQESPLASRSYALSRGG---IVMTDFFK 219
Query: 312 EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRL 371
+G VQDE+A LV D + + +D C+APGGKT+ +A L G V A+DI++ +L
Sbjct: 220 DGEVTVQDEAASLVAEAFDFKGNEQALDACSAPGGKTIQIAEQLP-DGQVTALDIHEKKL 278
Query: 372 RILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSGLGVLSKTCVGIGDW 430
R++ E A +V ++ D R + S + DK+L+DAPCSGLG+L
Sbjct: 279 RLVKENAARMRVADRVKVKALDARKAREYFSGQEFDKILIDAPCSGLGLL---------- 328
Query: 431 RIWKSLRYCKTSFLMQHLCETKYLLL 456
R +RY KT+ + HL E + +L
Sbjct: 329 RRKPEIRYTKTAEDISHLAEIQLDIL 354
>gi|418035126|ref|ZP_12673585.1| Methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1519]
gi|354691064|gb|EHE91004.1| Methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1519]
Length = 431
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 120/386 (31%), Positives = 186/386 (48%), Gaps = 38/386 (9%)
Query: 76 AFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICL 135
A A L+ +GS N + + L D + RL T++V GTI+++ YL++ +
Sbjct: 2 ALATLMKVINQGSYSN----ISLNHALKAAKLPDEESRLATNLVYGTIQYQLYLEYQLKD 57
Query: 136 LCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGN--LVN 192
L ++PLLL + Y+I LD +P AV+DE +LAKV RP + LVN
Sbjct: 58 LVKARLREPYIKPLLL----MSAYQIFFLDKVPNRAVLDEANKLAKVYGRPKSSGYRLVN 113
Query: 193 GILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVW 252
GILR L L+ LP ++ L+ S P+W+ + G+ A K+M
Sbjct: 114 GILRSL--LRRGEVLP-------EKDAPDYLSVKCSMPLWLSDYFVANWGKSRAEKIMAS 164
Query: 253 NNSDPSFSLRANSRKGVTRADLVMQLNLLKV-PHELSLHLDEFIRVKTGLQNVIQAGLLK 311
NS +R ++ R +V L+ P E L + + G ++ K
Sbjct: 165 FNSKAKNEIRISALADEKR--VVRDLDRAHFDPQESPLASRSYALSRGG---IVMTDFFK 219
Query: 312 EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRL 371
+G VQDE+A LV D + + +D C+APGGKT+ +A L G V A+DI++ +L
Sbjct: 220 DGEVTVQDEAASLVAEAFDFKGNEQALDACSAPGGKTIQIAEQLP-DGQVTALDIHEKKL 278
Query: 372 RILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSGLGVLSKTCVGIGDW 430
R++ E A +V ++ D R + S + DK+L+DAPCSGLG+L
Sbjct: 279 RLVKENAARMRVADRVKVKALDARKAREYFSGQEFDKILIDAPCSGLGLL---------- 328
Query: 431 RIWKSLRYCKTSFLMQHLCETKYLLL 456
R +RY KT+ + HL E + +L
Sbjct: 329 RRKPEIRYTKTAEDISHLAEIQLDIL 354
>gi|206901447|ref|YP_002251151.1| ribosomal RNA small subunit methyltransferase B [Dictyoglomus
thermophilum H-6-12]
gi|206740550|gb|ACI19608.1| ribosomal RNA small subunit methyltransferase B [Dictyoglomus
thermophilum H-6-12]
Length = 430
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 88/316 (27%), Positives = 170/316 (53%), Gaps = 18/316 (5%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L ++ +T++V G RW+ LD++ + S +LL+++ Y +
Sbjct: 33 NLSLKEKHFITELVYGVTRWKTTLDYIWSRFVKRD-NLSLFGRILLRLVAYHIYFLKDTI 91
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P V+E V +AK + P L+N + R++V K+ N+L L + + R
Sbjct: 92 LP--IAVNEIVEIAKRKV-PKEAKLINAVSRRMV--KERNNLDLNLIPFHIR-------- 138
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
Y+ P ++ W Y+G+ EA+K++ W N + ++R N+ K ++ DL +L +
Sbjct: 139 -YAIPEFIFEEWQDYIGKGEAVKILGWLNKAHNIAIRVNTLK-ISVEDLKEKLKERGIKF 196
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ + + + ++ G + ++ L G +Q E++ L +++P+PG ++D C+APG
Sbjct: 197 KDGNLVTQALLIEDGF-DFEKSDLFHNGYFVIQSEASMLPALILNPEPGSRVIDLCSAPG 255
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405
K+ ++A ++ +G + ++DINK R++++ E AK + S+I T+ D+ D+
Sbjct: 256 LKSTHLAELMNNKGKIVSVDINKNRVKLVEENAKRLGI-SIIETLAEDVLNLPDSLNGTF 314
Query: 406 DKVLLDAPCSGLGVLS 421
D+VLLDAPCSGLGV+S
Sbjct: 315 DRVLLDAPCSGLGVIS 330
>gi|375362218|ref|YP_005130257.1| sun protein [Bacillus amyloliquefaciens subsp. plantarum CAU B946]
gi|421731756|ref|ZP_16170879.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|451347055|ref|YP_007445686.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens IT-45]
gi|371568212|emb|CCF05062.1| sun protein [Bacillus amyloliquefaciens subsp. plantarum CAU B946]
gi|407073969|gb|EKE46959.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|449850813|gb|AGF27805.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens IT-45]
Length = 447
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 185/357 (51%), Gaps = 26/357 (7%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+T L D+D L+T++V GT++ + LD+++ + + ++P ++Q+LR+ Y++
Sbjct: 32 IKTNTLSDQDRGLLTELVYGTLQNKIALDYMLKPFI---RKPNKVKPWVIQLLRLSAYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK G + VNGILR L + + ++E
Sbjct: 89 EYLEKIPDRAAIHEAVEIAKKRGHKGIASFVNGILRSL---QREGAPSFAEIED----PV 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
L+T SHP W+V+ W + G E A K+ + P +LR N K R ++ ++
Sbjct: 142 LRLSTETSHPEWLVKEWVEAYGFEAAEKICRIHLIPPKQTLRVNHIKS-DRETVLNEMEN 200
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ E + I++ G ++ + G ++QDES+ LV +DP+PG++++D
Sbjct: 201 AGLEAEAGDLSPDAIKLLKG--SIANTAFFQNGRVSIQDESSMLVARALDPKPGETVLDA 258
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
CAAPGGK+ ++A + +G + ++D+++ +++++ E A+ + ++I D R +
Sbjct: 259 CAAPGGKSAHIAELMENEGSLTSLDLHRHKVKLIKEGAERLGL-TIIDAQTMDARKAGEA 317
Query: 401 -STVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
+ D++L+DAPCSG GV+ R ++Y KT + L E + +L
Sbjct: 318 FGAERFDRILVDAPCSGFGVI----------RRKPDMKYTKTPEDSRRLSEIQLGIL 364
>gi|257899950|ref|ZP_05679603.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium Com15]
gi|257837862|gb|EEV62936.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium Com15]
Length = 452
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 108/366 (29%), Positives = 186/366 (50%), Gaps = 33/366 (9%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L R+ GGA+++LL NEM + +L+ +D+ L T+++
Sbjct: 13 RYMALLTLERVNKGGAYSNLLL--------NEM--------IKQSELNQKDVGLFTELIY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI +R L+ + L K ++ + +L + Y++ LD +P +A+++E V +A
Sbjct: 57 GTISHQRLLEFYVAPLIAKAK---KVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIA 113
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
KV PG G VNG+LR + P L+G R L+ S P+WM +R
Sbjct: 114 KVKGNPGTGKFVNGVLR------NYQRQGAPDLQGIADPIER-LSVKISLPLWMTKRLVD 166
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKT 299
+G EE KL + S R ++R+ ++R + L ++ E S I K
Sbjct: 167 QIGYEETEKLGLSLYQPSHASARVDTRR-LSRDQAITVLQEEEITAEKSQVSPCGIVAKK 225
Query: 300 GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL--SG 357
G ++ + L +G+ +QDES+ LV + + ++D CAAPGGKT ++AS L S
Sbjct: 226 G--HLASSSLFHDGVMTIQDESSMLVAPSMQIEHEHHVLDACAAPGGKTTHIASFLDPSC 283
Query: 358 QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSG 416
G V A+D+++ +++++ E A V+S + D R + + D++L+DAPCSG
Sbjct: 284 GGEVIALDVHEHKVKLIEENATRLGVSSAVYAQKMDAREVSKQFEPEQFDRILVDAPCSG 343
Query: 417 LGVLSK 422
LG+L +
Sbjct: 344 LGLLRR 349
>gi|440780883|ref|ZP_20959354.1| 16S rRNA methyltransferase B [Clostridium pasteurianum DSM 525]
gi|440221471|gb|ELP60676.1| 16S rRNA methyltransferase B [Clostridium pasteurianum DSM 525]
Length = 443
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 101/324 (31%), Positives = 166/324 (51%), Gaps = 25/324 (7%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L+ +D LVT+IV GT++++ +D ++ K S++ +L ILR Y++ LD
Sbjct: 34 NLEAKDRALVTEIVYGTLKYKYTIDKILSNFIR--KDLKSIDIYVLNILRSSIYQMRYLD 91
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A V+E V++ K G VN +LR + K+ N E +D + L+
Sbjct: 92 KIPEFAAVNEAVQIVKKKKGVGVSKFVNAVLRNYIRSKNVN------FEKDDD-EIHKLS 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
YS WMV + K G E AI +M N S+R N K D N+ +
Sbjct: 145 FQYSFEPWMVELFVKQYGIEMAISIMEGLNEVAYISVRVNLLK--ENYD-----NIFNIL 197
Query: 285 HELSLHLD------EFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 338
E + +++ E I + G N+ Q L K+G VQDESA LV + ++ +I+
Sbjct: 198 LEGNFNIEKGYINKEAINIIKG-GNIEQNNLFKDGFITVQDESAMLVASSMEISNNMTIL 256
Query: 339 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398
D C+APGGKT ++ L+ G V A D++ +LR++ ++A+ + ++I + D R +
Sbjct: 257 DLCSAPGGKTTHICEILNNTGEVKAFDLHANKLRLIKKSAERLGIKNLICS-EMDARKYD 315
Query: 399 DNSTVKCDKVLLDAPCSGLGVLSK 422
D +VL+D PCSGLG++ K
Sbjct: 316 DKYKKIAHRVLIDVPCSGLGIIKK 339
>gi|317133047|ref|YP_004092361.1| sun protein [Ethanoligenens harbinense YUAN-3]
gi|315471026|gb|ADU27630.1| sun protein [Ethanoligenens harbinense YUAN-3]
Length = 436
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 103/324 (31%), Positives = 157/324 (48%), Gaps = 26/324 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L RD L T +V G + R LD+L L + M+P+L ILR+G Y++ LD
Sbjct: 35 LSRRDAALATALVYGVVARRITLDYL--LETASGRPVQKMQPVLRAILRLGAYQLCYLDK 92
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A V+E V+LAK A VNG+LR L + +LP P E + RA
Sbjct: 93 IPARAAVNEAVQLAKKRHLGHASGFVNGVLRGLD--RKRGALPFPSEEAD---VLRAWEV 147
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVT---RADL----VMQL 278
YS P ++ W + G E +++ N+ P ++R N+ + RA+L +
Sbjct: 148 RYSCPRALIALWRQAYGPERTREILEQLNAVPPLAVRVNTLRTTPDALRAELAEAGIEAA 207
Query: 279 NLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 338
VP L L +R EG VQD ++ + A +DPQPG+++
Sbjct: 208 PDASVPDALLLSHSADLRTLPAF---------TEGCFFVQDIASQMACAALDPQPGETVY 258
Query: 339 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398
D CAAPGGK+ +A + GQG+V A D++ R+R++ E A ++ +++ D
Sbjct: 259 DLCAAPGGKSFTLALHMRGQGMVRAFDLHAHRVRLIEEGAGWLGLSGIVQASVRD--ATG 316
Query: 399 DNSTVKCDKVLLDAPCSGLGVLSK 422
D+VL D PCSGLGV+ +
Sbjct: 317 GEPLPPADRVLCDVPCSGLGVIRR 340
>gi|119512103|ref|ZP_01631196.1| Fmu, rRNA SAM-dependent methyltransferase [Nodularia spumigena
CCY9414]
gi|119463261|gb|EAW44205.1| Fmu, rRNA SAM-dependent methyltransferase [Nodularia spumigena
CCY9414]
Length = 449
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 108/325 (33%), Positives = 160/325 (49%), Gaps = 26/325 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPL-LLQILRIGFYEI-VKL 164
L + D RL+T++V G++R +R LD LI L + S +P L IL +G Y++ +
Sbjct: 34 LPNHDRRLLTELVYGSVRRQRTLDTLIDQLATKK---SHQQPKDLRSILHLGLYQLRYQE 90
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P A V+ V+LAK G VNG+LR+ + L PL KL N L
Sbjct: 91 RIPASAAVNTTVQLAKENGFSGLTGFVNGLLRQYIRLAQKLPEPL-KLPENP---VERLG 146
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANS-RKGVTRADLVMQ------ 277
++S P W+++ W L E L W N P+ LR N R + + ++
Sbjct: 147 ILHSFPDWIIQVWLDQLDLVETENLCDWMNQTPTIDLRINPLRTSIEEVEAALESAGILT 206
Query: 278 LNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 337
+ P L L I +QN+ EG +VQD SA LV ++ PQ G+ +
Sbjct: 207 RRVNNCPQALRL-----IGSTGAIQNLPG---FNEGWWSVQDASAQLVGYLLHPQAGEVV 258
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397
+D CAAPGGKT ++A + +G ++A D RLR L E A+ + S I+ D R
Sbjct: 259 IDACAAPGGKTTHIAELMGDEGEIWACDRTASRLRKLKENAQRLHLQS-IQICTGDSRNL 317
Query: 398 ADNSTVKCDKVLLDAPCSGLGVLSK 422
+ + D++LLDAPCSGLG L +
Sbjct: 318 PQFNH-RGDRLLLDAPCSGLGTLHR 341
>gi|311068095|ref|YP_003973018.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus atrophaeus
1942]
gi|310868612|gb|ADP32087.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus atrophaeus
1942]
Length = 447
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 92/326 (28%), Positives = 175/326 (53%), Gaps = 22/326 (6%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
++ +L D+D L+T++V GT++ + LD+++ + + ++P ++Q+LR+ Y++
Sbjct: 32 IKSNELSDQDRGLLTELVYGTLQNKTALDYMLKPFINKP---AKVKPWVIQLLRLSLYQM 88
Query: 162 VKLDMPPY-AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ P+ A + E V +AK G + VNG+LR + +P +
Sbjct: 89 EYLEKIPHRAAIHEAVEIAKKRGHKGIASFVNGVLRSV------QREGVPSFAAINDPVT 142
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R LAT SHP W+V+ W + G + A K+ + P +LR N K R +L+ L
Sbjct: 143 R-LATETSHPEWLVKEWAEAYGFDAAEKICRIHLVPPKQTLRVNQMK-TDRDELLESLAA 200
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ E + +++ G ++ + K G ++QDES+ LV + P+ G++I+D
Sbjct: 201 EGIEAEKGDLSPDAVKLLKG--SIAGSRFFKNGDVSIQDESSMLVARALGPEAGETILDA 258
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR----T 396
CAAPGGK+ ++A + +G V ++D+++ +++++ E A + ++I+ D R
Sbjct: 259 CAAPGGKSTHIAERMGNEGSVLSLDLHEHKVKLIKEAANRLGL-TIIKPEAMDARKASEA 317
Query: 397 FADNSTVKCDKVLLDAPCSGLGVLSK 422
F D+ + D++L+DAPCSG GV+ +
Sbjct: 318 FQDD---EFDRILVDAPCSGFGVIRR 340
>gi|81428305|ref|YP_395305.1| rRNA methytransferase (sun protein) [Lactobacillus sakei subsp.
sakei 23K]
gi|78609947|emb|CAI54994.1| Putative rRNA methytransferase (sun protein) [Lactobacillus sakei
subsp. sakei 23K]
Length = 447
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 107/331 (32%), Positives = 161/331 (48%), Gaps = 39/331 (11%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L+ +D +T +V G I+ LD+ + K M+ + Q+LR Y+ V LD
Sbjct: 37 LNPQDAGFLTQLVYGVIQHEYTLDYYLAPFIQKPK---KMDNWVRQVLRTAVYQQVYLDR 93
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQARAL 223
+P +A+ E +AK G LV ILR+L L D N++ P L
Sbjct: 94 VPEHAIFYEATEIAKKMGHAGVSKLVTAILRQLQRSGLPDLNAIADP---------IERL 144
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQLNL 280
+ YS P W+V + LG ++ L+ N + SLR N+R A +L Q N
Sbjct: 145 SVQYSVPQWLVAKLQADLGDDKLESLLATINQPANASLRVNTRVNTVDAILAELQPQFND 204
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAG------LLKEGLCAVQDESAGLVVAVVDPQPG 334
L+ P +++ K GL V Q G L + G +QDES+ LV +D QPG
Sbjct: 205 LQ-PSQIA---------KVGL--VAQGGHLASGALFEAGDYTIQDESSMLVAPSLDIQPG 252
Query: 335 QSIVDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 392
++D CAAPGGKT +MA+ L Q G + A+DI+ ++R++ + AK V V+
Sbjct: 253 DQVLDACAAPGGKTTHMATYLDAQRGGQITALDIHDHKVRLIEQNAKRLHVEDVVSAQAL 312
Query: 393 DLRTFADN-STVKCDKVLLDAPCSGLGVLSK 422
D R + DK+L+DAPCSGLG++ +
Sbjct: 313 DARKVGEQFGEAHFDKILVDAPCSGLGLMRR 343
>gi|419823924|ref|ZP_14347457.1| 16S rRNA methyltransferase B [Bacillus atrophaeus C89]
gi|388471961|gb|EIM08751.1| 16S rRNA methyltransferase B [Bacillus atrophaeus C89]
Length = 447
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/326 (28%), Positives = 175/326 (53%), Gaps = 22/326 (6%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
++ +L D+D L+T++V GT++ + LD+++ + + ++P ++Q+LR+ Y++
Sbjct: 32 IKSNELSDQDRGLLTELVYGTLQNKTALDYMLKPFINKP---AKVKPWVIQLLRLSLYQM 88
Query: 162 VKLDMPPY-AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ P+ A + E V +AK G + VNG+LR + +P +
Sbjct: 89 EYLEKIPHRAAIHEAVEIAKKRGHKGIASFVNGVLRSV------QREGVPSFAAINDPVP 142
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R LAT SHP W+V+ W + G + A K+ + P +LR N K R +L+ L
Sbjct: 143 R-LATETSHPEWLVKEWAEAYGFDAAEKICRIHLVPPKQTLRVNQMK-TDRDELLESLAA 200
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ E + +++ G ++ + K G ++QDES+ LV + P+ G++I+D
Sbjct: 201 EGIEAEKGDLSPDAVKLLKG--SIAGSRFFKNGDVSIQDESSMLVARALGPEAGETILDA 258
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR----T 396
CAAPGGK+ ++A + +G V ++D+++ +++++ E A + ++I+ D R
Sbjct: 259 CAAPGGKSTHIAERMGNEGSVLSLDLHEHKVKLIKEAANRLGL-TIIKPEAMDARKASEA 317
Query: 397 FADNSTVKCDKVLLDAPCSGLGVLSK 422
F D+ + D++L+DAPCSG GV+ +
Sbjct: 318 FQDD---EFDRILVDAPCSGFGVIRR 340
>gi|116873257|ref|YP_850038.1| sun protein [Listeria welshimeri serovar 6b str. SLCC5334]
gi|116742135|emb|CAK21259.1| sun protein [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 444
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 104/361 (28%), Positives = 186/361 (51%), Gaps = 34/361 (9%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGF 158
+ + L+ D L+T++V GT + + LD+ + F + EP + +LR+
Sbjct: 32 ALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLA-------PFLNKEPDNWVKNLLRMSV 84
Query: 159 YEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL-EGND 216
Y++ LD +P +A+++E +AK G VNG+LR ++ +P + E D
Sbjct: 85 YQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRNVI------RKGVPSIDEVKD 138
Query: 217 RAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM 276
Q A+ T S P W+ +RW G ++ ++ + P S+R N + + L+
Sbjct: 139 PVQKIAVET--SLPEWLAKRWADQYGVQKLREIGLAFLVAPHQSIRVNQTE-IRTEQLIK 195
Query: 277 QLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 336
+LN + + +DE + V+ G +V + K+G C++QDES+ L + + +
Sbjct: 196 ELNDQGITVTQNEFIDEALLVEKG--SVAETKAYKDGKCSIQDESSMLAAYALQLEDNLT 253
Query: 337 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396
++D CAAPGGKT ++A + G G+V+A+DI++ + +++++ AK Q+ + IRT H D RT
Sbjct: 254 VLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQAAKRLQLLN-IRTAHQDART 312
Query: 397 FADNSTVKC-DKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLL 455
+ + D++L+DAPCSG GVL R ++Y KT + L E + +
Sbjct: 313 ASTMFEPETFDRILVDAPCSGFGVL----------RRKPDIKYAKTEKDIHKLAEIQLAI 362
Query: 456 L 456
L
Sbjct: 363 L 363
>gi|225871064|ref|YP_002747011.1| ribosomal RNA small subunit methyltransferase [Streptococcus equi
subsp. equi 4047]
gi|225700468|emb|CAW94888.1| putative ribosomal RNA small subunit methyltransferase
[Streptococcus equi subsp. equi 4047]
Length = 442
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 108/326 (33%), Positives = 170/326 (52%), Gaps = 37/326 (11%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D+D LVT+IV GTI + L+ + D ++ + +L + Y++ LD
Sbjct: 42 LSDKDKALVTEIVYGTISRKITLEWYLAHYIEDR---DRLDKWVYYLLMLSLYQLAYLDK 98
Query: 166 MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A+V++ V LAK A GA LVN +LR+L + PLP ++ R + + A
Sbjct: 99 VPAHAIVNDAVNLAKARAHGRGADKLVNAVLRQL------TNKPLPDIKSIKR-KNKYYA 151
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
YS PVW+V++ G+E A+ +M SL SR + DL +L+ +K
Sbjct: 152 VAYSVPVWLVKKLIDQFGEERAVAIME--------SLFVRSRASIRVTDLT-KLDEIK-- 200
Query: 285 HELSLHLDEFIRVKTGLQ----NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ ++ + +TGL N + G +QDE++ LV +D Q + I+D
Sbjct: 201 --QATGSEQSLLARTGLTKRAGNFAASSYFINGDITIQDETSQLVAPTLDIQGQEMILDA 258
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT---- 396
C+APGGKT ++AS L+ G V A+D+ + +L ++NE AK V I T D R
Sbjct: 259 CSAPGGKTAHIASYLTS-GKVVALDLYEHKLALVNENAKRLGVADRIETKVLDAREVHKH 317
Query: 397 FADNSTVKCDKVLLDAPCSGLGVLSK 422
FA NS DK+L+DAPCSG+G++ +
Sbjct: 318 FAKNS---FDKILVDAPCSGIGLIRR 340
>gi|308272081|emb|CBX28689.1| hypothetical protein N47_G40130 [uncultured Desulfobacterium sp.]
Length = 450
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 164/327 (50%), Gaps = 26/327 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPL-----LLQILRIGFYEI 161
L R+ L +V G +RWR LD +I + FS P +L ILRIG ++I
Sbjct: 35 LPKREKALFNALVYGVLRWRSRLDWII-------RQFSKQPPEKTNTEILNILRIGLFQI 87
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ L+ +P A V+ +V +AK + VN +LR+ V ++ SL P + D+
Sbjct: 88 IHLNRIPVSAAVNTSVEIAKHTVGTKCSGYVNAVLRRTV--REYKSLCFPDM---DKKTE 142
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLV--MQL 278
++ S P WM++RW LG+ AI L N+ P ++R N+ K R +L+ ++
Sbjct: 143 YGISVNKSFPEWMIKRWVSLLGKNSAIDLCDAINNIPPITVRVNTLK-TNRDELISCIES 201
Query: 279 NLLKV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 337
+ P + S F R K + + + K+G VQDE+A L ++DPQPG+ +
Sbjct: 202 ETQDIRPTDCSPGGVSFSRPK---ELISEMEAFKKGGFQVQDEAAQLAAFLMDPQPGEKV 258
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRL-RILNETAKLHQVNSVIRTIHADLRT 396
+D CA GGKT ++ + +G + AID +K +L R+ + +L N
Sbjct: 259 MDACAGLGGKTGHIGQLMENKGYITAIDKDKEKLFRLSLDMERLGITNVTTSAGDFGDPV 318
Query: 397 FADNSTVKCDKVLLDAPCSGLGVLSKT 423
F + + K D++L+DAPCS +GV+ +
Sbjct: 319 FLKSYSGKFDRILIDAPCSNMGVIRRN 345
>gi|422809903|ref|ZP_16858314.1| Ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes FSL J1-208]
gi|378751567|gb|EHY62155.1| Ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes FSL J1-208]
Length = 444
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 103/361 (28%), Positives = 187/361 (51%), Gaps = 34/361 (9%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGF 158
+ + L+ D L+T++V GT + + LD+ + F + EP + +LR+
Sbjct: 32 ALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLA-------PFLNKEPDNWVKNLLRMSV 84
Query: 159 YEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG-ND 216
Y++ LD +P +A+++E +AK G VNG+LR ++ +P ++ D
Sbjct: 85 YQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRNVI------RKGVPSIDAIKD 138
Query: 217 RAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM 276
Q A+ T S P W+ +RW + G E+ ++ + P S+R N + + L+
Sbjct: 139 PVQKIAVET--SLPEWLAKRWAEQYGIEKLREIGLAFLVAPHQSIRVNQTE-IPTEQLIK 195
Query: 277 QLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 336
+LN + + ++E + V+ G +V + K+G C++QDES+ L + + +
Sbjct: 196 ELNDQGITVTRNEFIEEALLVEKG--SVAETKAYKDGKCSIQDESSMLAAYALQLEDNLT 253
Query: 337 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396
++D CAAPGGKT ++A + G G+V+A+DI++ + +++++ AK Q+ + IRT H D RT
Sbjct: 254 VLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQAAKRLQLLN-IRTAHLDART 312
Query: 397 FADNSTVKC-DKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLL 455
+ + D++L+DAPCSG GVL R ++Y KT + L E + +
Sbjct: 313 ASTMFEPETFDRILVDAPCSGFGVL----------RRKPDIKYAKTEKDIHKLAEIQLAI 362
Query: 456 L 456
L
Sbjct: 363 L 363
>gi|218778410|ref|YP_002429728.1| sun protein [Desulfatibacillum alkenivorans AK-01]
gi|218759794|gb|ACL02260.1| sun protein [Desulfatibacillum alkenivorans AK-01]
Length = 455
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 102/338 (30%), Positives = 163/338 (48%), Gaps = 12/338 (3%)
Query: 88 SGDNEMGYV-ERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSM 146
SGD + V +R L + L +D LV +V G +R R +D +I + +
Sbjct: 23 SGDQVLDVVLDRALD-KEPGLTRKDRALVMALVYGVLRNRGRIDWIIS--SFSKTKLKKI 79
Query: 147 EPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNN 205
+P +L ILR+G ++++ LD +PP VD +V +AK A VNG+LR + +
Sbjct: 80 QPEILNILRMGVFQLLFLDRVPPALAVDSSVEMAKKAAPVFVSKFVNGLLRNVE--RKGR 137
Query: 206 SLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANS 265
L LP + +A+ S+P WMV+RW K G EE ++L N ++R NS
Sbjct: 138 GLQLPDFAKD---PLKAICVAESYPEWMVKRWIKRFGAEETLELCKAGNRIAPITIRVNS 194
Query: 266 RKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLV 325
TR + ++ EL + L V + EG +VQD ++ +
Sbjct: 195 L-AATRDEAADEIRDQVKNLELHDWPPMALSFSAPLVPVFELPGFSEGKFSVQDAASQMT 253
Query: 326 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385
+DP+PG+ ++D CA G KT ++A + G + A D+ G+L+ L E +V S
Sbjct: 254 ALCLDPRPGEKVLDACAGLGSKTSHIAQLMENTGEILAADLEPGKLKKLEEEMARLKV-S 312
Query: 386 VIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKT 423
+++T D DKVL+DAPC+GLGV+ +
Sbjct: 313 IVKTHALDFTRELSLEPQGFDKVLVDAPCTGLGVIRRN 350
>gi|433655119|ref|YP_007298827.1| ribosomal RNA small subunit methyltransferase RsmB
[Thermoanaerobacterium thermosaccharolyticum M0795]
gi|433293308|gb|AGB19130.1| ribosomal RNA small subunit methyltransferase RsmB
[Thermoanaerobacterium thermosaccharolyticum M0795]
Length = 447
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 90/332 (27%), Positives = 170/332 (51%), Gaps = 14/332 (4%)
Query: 94 GYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLL 151
GY+ L ++ D D + +IV GTI + LD +I C K ++ +L
Sbjct: 19 GYLNIVLNKYLNNNEIADVDRSFIKEIVFGTIERKYTLDRIIDY-CS-TKDIEKIDNKVL 76
Query: 152 QILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLP 210
IL +G ++++ +D +P YA ++E+V L K + A VN +LR L+++ + P
Sbjct: 77 IILEMGLFQLMYMDKVPDYAAINESVNLTKEHVGKYASKFVNAVLRSY--LRNSMKIKFP 134
Query: 211 KLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVT 270
+ + N + YS P W+V+R ++ ++ N P SLR N+ K +
Sbjct: 135 QPDEN---LIEYFSIKYSFPEWIVKRLLNNYDRDATESILESLNDKPEISLRLNTLK-IG 190
Query: 271 RADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVD 330
+ + +LN + + L+ ++ + L+N+ + KEGL VQDE A ++ V+
Sbjct: 191 KEEFEKKLNERGLKYRKGLYNNDAYYI--DLRNITNDEMYKEGLIQVQDEGAMIISKVLS 248
Query: 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTI 390
P+P ++D C+APGGKT +++ ++ +G + A DI + ++ ++ + +++V +
Sbjct: 249 PKPDDMVMDVCSAPGGKTTHLSQLMNNKGKIVAFDIYEHKIDLIKRNCRRLGIDNVDAFV 308
Query: 391 HADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
+ ++ K DKVL+D PCSG+G++ K
Sbjct: 309 FDSTKVNSE-YIDKADKVLVDVPCSGIGIIRK 339
>gi|408356908|ref|YP_006845439.1| rRNA methyltransferase [Amphibacillus xylanus NBRC 15112]
gi|407727679|dbj|BAM47677.1| putative rRNA methyltransferase [Amphibacillus xylanus NBRC 15112]
Length = 452
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 105/358 (29%), Positives = 178/358 (49%), Gaps = 36/358 (10%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
D +D L T++V GT++ + LD+ + K +E + +L + FY++ LD
Sbjct: 36 DWAHKDQALFTELVYGTLQRKLTLDYFLNHFVDPNK---KVEKWVKWLLYLSFYQMHYLD 92
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKL----VLLKDNNSLPLPKLEGNDRAQA 220
+P +A++ E V +AK G VNG+LR+ L D P+ +L
Sbjct: 93 KIPDHAIIHEAVEIAKQKGHQGIAKFVNGVLREAQRQGFPLFDTIKDPIERL-------- 144
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
++ T SHP W+V RW G+E+ + N S+R NS K +TR + + QL
Sbjct: 145 -SIET--SHPYWLVERWIDSYGEEQTEAMCKANLETKPISVRVNSLK-LTRDEAIEQLTH 200
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ SL ++ I ++ G +++ L K G +QD+S+ LVV ++D + Q ++D
Sbjct: 201 DGFEVKASLFSNQGIIIEKG--HILDHPLFKSGSLTIQDQSSMLVVEMLDIKQDQIVLDA 258
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHADLRTFAD 399
C+APGGK ++ L+ G VYA D+++ ++ ++ A +L +N I T D R
Sbjct: 259 CSAPGGKATHIGEKLNNTGRVYAYDLHQKKVNLVKRKAEQLGLIN--ISTAAIDGRQLNQ 316
Query: 400 NSTVKC-DKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
+ D++L+DAPCSG GV+ R ++Y KT+ + +L +Y LL
Sbjct: 317 KYEPETFDRILVDAPCSGFGVI----------RTKPDIKYAKTAKDVDNLAHVQYELL 364
>gi|227524617|ref|ZP_03954666.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus hilgardii
ATCC 8290]
gi|227088292|gb|EEI23604.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus hilgardii
ATCC 8290]
Length = 444
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 116/357 (32%), Positives = 172/357 (48%), Gaps = 36/357 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDH-LICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+ D D L T+IV G I+ R L++ L+ L EKT E + ++L Y++ LD
Sbjct: 38 MSDVDKALFTNIVYGVIQHRMTLEYQLVPFLKDSEKT----EDWVKELLYTAMYQLEYLD 93
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGIL----RKLVLLKDNNSLPLPKLEGNDRAQA 220
+P A+ DE++++AK G V GIL RK V D P+ K+
Sbjct: 94 RVPKRAIFDESIKIAKSMGHDGTRRFVTGILHQMDRKGVREPDKIKDPVKKI-------- 145
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
+ YS P W+V LG+++A ++ N P S+R N K T++ L QL
Sbjct: 146 ---SIKYSVPEWLVSLIEGQLGKQKADQVFKSLNQTPKQSVRFNKAK-TTKSKLTDQLTQ 201
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
E SL E I V G V+ + + GL +QDESA L V + QP I+D
Sbjct: 202 AGFQTEDSLVAGEGIIVDKG--QVVHSAFFENGLLTIQDESAMLPVESMSIQPDDLILDA 259
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
C+APGGKT +A+ L G V A+DI++ +L+ + AK V+ V+ T D R +
Sbjct: 260 CSAPGGKTTQIAANLKN-GRVIALDIHQNKLKNVIRNAKRLGVDGVVETQALDARKVDEK 318
Query: 401 -STVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
S D +L+DAPCSG G++ R +RY KT + HL + + +L
Sbjct: 319 FSDEMFDHILVDAPCSGFGLM----------RRKPEIRYDKTLADINHLSQIQLQIL 365
>gi|408411001|ref|ZP_11182188.1| RNA methyltransferase Sun [Lactobacillus sp. 66c]
gi|407874834|emb|CCK83994.1| RNA methyltransferase Sun [Lactobacillus sp. 66c]
Length = 438
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 106/315 (33%), Positives = 161/315 (51%), Gaps = 24/315 (7%)
Query: 113 RLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAV 171
RL T++V GT++ + YLD+ + L + + +EPLLL + Y+++ LD +P AV
Sbjct: 42 RLATNLVYGTLQNKLYLDYQLKDLVKAKLKEAYIEPLLL----MSIYQLLFLDKVPARAV 97
Query: 172 VDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
+DE +LAK +P + LVNGILR LPK + +D L+ YS
Sbjct: 98 LDEANKLAKAFGKPKSSGYRLVNGILRSF----QRRGTILPKEDDSDY-----LSVKYSE 148
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV-PHELS 288
P W+ G + A K+M N+ +R +S V +V L P E +
Sbjct: 149 PKWLADYLVANWGPKRAEKIMASFNTHAKNEIRISSM--VKEGQVVYDLKKAHFNPVESA 206
Query: 289 LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKT 348
L + + G +I KEG VQDE+A LV D + ++D CAAPGGKT
Sbjct: 207 LADRSYSLSRGG---IILTDFFKEGQVTVQDEAASLVAEAFDFTGNERVLDSCAAPGGKT 263
Query: 349 LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDK 407
+ +A + +G V A+DI++ +LR++ E A+ QV ++T D R S + DK
Sbjct: 264 IQLAEKVP-EGQVTALDIHEKKLRLVRENAQRMQVADRVKTKALDARKAGGYFSKGEFDK 322
Query: 408 VLLDAPCSGLGVLSK 422
+L+DAPCSGLG+L +
Sbjct: 323 ILIDAPCSGLGLLRR 337
>gi|229031495|ref|ZP_04187495.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1271]
gi|228729784|gb|EEL80764.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1271]
Length = 402
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 100/313 (31%), Positives = 165/313 (52%), Gaps = 22/313 (7%)
Query: 114 LVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVV 172
++T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD +P A +
Sbjct: 1 MLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDRVPERAAI 55
Query: 173 DENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVW 232
E V +AK G +VNG+LR + +P E D + A+AT SHP+W
Sbjct: 56 HEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT--SHPMW 108
Query: 233 MVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK-GVTRADLVMQLNLLKVPH-ELSLH 290
+V+ W G E A K+ N P + R N K V A ++ ++ H +LS
Sbjct: 109 LVQDWASEYGLETAEKMCEVNMLPPVPTARVNVDKITVDEAIELLASEGIEAKHGDLS-- 166
Query: 291 LDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLY 350
++ I+++ G NV K+G ++QDES+ LV +DP G ++D CAAPGGKT +
Sbjct: 167 -EDAIQIERG--NVAHTDAFKKGFLSIQDESSMLVARALDPNEGDVVLDSCAAPGGKTTH 223
Query: 351 MASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVL 409
+A L G G V ++D++ ++R++ + A+ + +V T D R ++ + DK+L
Sbjct: 224 IAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFANETFDKIL 282
Query: 410 LDAPCSGLGVLSK 422
+DAPCSG GV+ +
Sbjct: 283 VDAPCSGFGVIRR 295
>gi|168210626|ref|ZP_02636251.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens B str. ATCC 3626]
gi|168214218|ref|ZP_02639843.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens CPE str. F4969]
gi|168217028|ref|ZP_02642653.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens NCTC 8239]
gi|182625836|ref|ZP_02953602.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens D str. JGS1721]
gi|170711319|gb|EDT23501.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens B str. ATCC 3626]
gi|170714316|gb|EDT26498.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens CPE str. F4969]
gi|177908870|gb|EDT71362.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens D str. JGS1721]
gi|182380885|gb|EDT78364.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens NCTC 8239]
Length = 442
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 165/329 (50%), Gaps = 17/329 (5%)
Query: 96 VERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILR 155
+E F + D+D +D L+T++V GTI++++ +D ++ D ++ ++ ILR
Sbjct: 23 IEINKQFASNDIDPKDKGLITEVVYGTIKYKKMIDIILSSFVAD---IGKIDESVVNILR 79
Query: 156 IGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG 214
Y++ LD +PPYA+V+E V L K P VNG+LR L++ N L
Sbjct: 80 SAIYQMKFLDRVPPYAIVNEAVNLTK-ETEPNLAKFVNGVLRNY--LRNENKNFKVGLRN 136
Query: 215 NDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL 274
N+ AL +S WM+ + K G+E+A++++ N+ P ++R N+ K ++
Sbjct: 137 NE-----ALCYDFSFDRWMIEMFIKQYGKEDALRILRGLNTVPYVTVRVNTCKA-DYDEV 190
Query: 275 VMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 334
+L E E I +K G + + L +EGL VQDESA LV + D +
Sbjct: 191 YERLEEEGYDIEEGAFSPEAIIIKKG-SAIEKNKLYQEGLITVQDESAMLVAPLFDLKGD 249
Query: 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHAD 393
+ ++D C+APG K ++ + +G V A DI+ +L ++ E +L N + D
Sbjct: 250 EQVMDLCSAPGTKATHIGELMMNKGKVVAFDIHDHKLALIKENIDRLGLTNVEVEL--GD 307
Query: 394 LRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
D+VLLD PCSGLG++ K
Sbjct: 308 ATKINSKYINWADRVLLDVPCSGLGIIRK 336
>gi|160915468|ref|ZP_02077679.1| hypothetical protein EUBDOL_01476 [Eubacterium dolichum DSM 3991]
gi|158432588|gb|EDP10877.1| ribosomal RNA small subunit methyltransferase B [Eubacterium
dolichum DSM 3991]
Length = 415
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 104/339 (30%), Positives = 167/339 (49%), Gaps = 42/339 (12%)
Query: 94 GYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPL--LL 151
GY L + + +D +D LVT IV GT++ R L+ + +++ EP +
Sbjct: 19 GYSNLLLRNKLQSVDPKDKALVTQIVYGTLQNYR-------LVRYQWQSYVKKEPCKEVA 71
Query: 152 QILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLP 210
+L + Y+++ +D MP YAV+DE VR+ K + P LVN +LR++ + N
Sbjct: 72 LLLDMSVYQLLYMDKMPAYAVIDEAVRITKKNIHPRFSALVNAVLRQV----ERNGKR-- 125
Query: 211 KLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVT 270
+LEGN Q LA SHP W+V W G +E K+ +SD RK
Sbjct: 126 ELEGNAIEQ---LALETSHPTWLVAMWKAQYGWQECEKIC---HSDLEI------RKQCV 173
Query: 271 RADLVMQLNLLKVPHELSLHLDEFIRVKTGLQ-------NVIQAGLLKEGLCAVQDESAG 323
R +N +K E L EF++ ++I + K+GL ++QDE++
Sbjct: 174 R------VNTMKASVEELLASGEFVKGNLAEHALYYLGNDIIHSNYYKQGLVSIQDEASQ 227
Query: 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV 383
LV VDPQP + I+D C+APG K ++A + +G + DI+ R+ ++ A+ Q+
Sbjct: 228 LVAQYVDPQPQERILDVCSAPGTKACHIAERMGDKGSIVCGDIHAHRVELIKNGARRLQL 287
Query: 384 NSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
S+ + D + + D+VL D PCSG GVL++
Sbjct: 288 QSIQAQV-MDATSLKEIEGEMFDRVLCDVPCSGYGVLAR 325
>gi|384265156|ref|YP_005420863.1| sun protein [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387898153|ref|YP_006328449.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
amyloliquefaciens Y2]
gi|380498509|emb|CCG49547.1| sun protein [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387172263|gb|AFJ61724.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
amyloliquefaciens Y2]
Length = 447
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 97/356 (27%), Positives = 184/356 (51%), Gaps = 26/356 (7%)
Query: 103 RTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIV 162
+T L D+D L+T++V GT++ + LD ++ + + ++P ++Q+LR+ Y++
Sbjct: 33 KTNTLSDQDRGLLTELVYGTLQNKIALDFMLKPFI---RKPNKVKPWVIQLLRLSAYQME 89
Query: 163 KLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
L+ +P A + E V +AK G + VNGILR L + + ++E
Sbjct: 90 YLEKIPDRAAIHEAVEIAKKRGHKGIASFVNGILRSL---QREGAPSFAEIED----PVL 142
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
L+T SHP W+V+ W + G E A K+ + P +LR N K R ++ ++
Sbjct: 143 RLSTETSHPEWLVKEWVEAYGFEAAEKICRIHLIPPKQTLRVNHIKS-DRETVLNEMENA 201
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
+ E + I++ G ++ + G ++QDES+ LV +DP+PG++++D C
Sbjct: 202 GLEAEAGDLSPDAIKLLKG--SIANTAFFQNGRVSIQDESSMLVARALDPKPGETVLDAC 259
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN- 400
AAPGGK+ ++A + +G + ++D+++ +++++ E A+ + ++I D R +
Sbjct: 260 AAPGGKSAHIAELMENEGSLTSLDLHRHKVKLIKEGAERLGL-TIIDAQTMDARKAGEAF 318
Query: 401 STVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
+ D++L+DAPCSG GV+ R ++Y KT + L E + +L
Sbjct: 319 GAERFDRILVDAPCSGFGVI----------RRKPDMKYTKTPEDSRRLSEIQLGIL 364
>gi|258511305|ref|YP_003184739.1| sun protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
gi|257478031|gb|ACV58350.1| sun protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
Length = 451
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 107/355 (30%), Positives = 175/355 (49%), Gaps = 28/355 (7%)
Query: 68 LMRIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWR 126
L+R++ GAF + L + G+G +D+RD L T+I GT+R +
Sbjct: 13 LIRVERDGAFLNAALQEALAGAG-----------------VDERDRALATEIAYGTLRRQ 55
Query: 127 RYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRP 185
LD L+ L + S ++P + ILR+G Y++ L+ +P YA ++ V LAK RP
Sbjct: 56 ITLDRLLSPLVR--RPMSKLDPEVRVILRMGAYQMTWLNRVPAYAAANDAVELAK-RHRP 112
Query: 186 GAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEE 245
A LVN +LR+ + L K + R + +YS P W+V R G +
Sbjct: 113 QAAALVNAVLRRYAERAQDWEDLLNKAVAGAKDVER-WSVMYSVPAWIVERLVADHGADR 171
Query: 246 AIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVI 305
+ + N SLRAN +G +R + + +L + ++ +RV+ G +V
Sbjct: 172 VLAALASMNEPAPMSLRANRLRG-SREEAIARLGAEGAVARPAALAEDGLRVQ-GQVDVT 229
Query: 306 QAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAID 365
+ ++G +QDE A LV ++ P+PG +VD CAAPGGKT ++A + +G + A D
Sbjct: 230 RLQAYRDGYVTIQDEGAMLVAPLLRPEPGMRVVDLCAAPGGKTTHLAELMGDRGEIDAYD 289
Query: 366 INKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVL 420
+ ++R + + A+ + SV + D R D L+DAPC+GLGV+
Sbjct: 290 VTVAKVRAIRQQAERLGLQSVHPRL-GDGRQVTPEGLY--DAALVDAPCTGLGVM 341
>gi|148241673|ref|YP_001226830.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
RCC307]
gi|147849983|emb|CAK27477.1| Ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
RCC307]
Length = 454
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 120/366 (32%), Positives = 174/366 (47%), Gaps = 34/366 (9%)
Query: 59 PHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDI 118
P R V A R++ GA+ADL +ER L + L RD L T++
Sbjct: 30 PPRLV-AWRVLEAVGDGAYADL--------------ALEREL--KRSKLSPRDRGLATEL 72
Query: 119 VGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVR 177
G IR RR LD + LL + + P L +L +G +I+ +D +P A V V
Sbjct: 73 AYGAIRQRRRLDGWLDLL--GKVPAAKQPPRLRWLLHVGLQQILLMDRVPASAAVSTAVE 130
Query: 178 LAKVALRPGAGNLVNGILRKLV-LLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRR 236
LAK +VNG+LR V ++ SLP+P Q R LA +S P W+V
Sbjct: 131 LAKRERLQRLAPVVNGVLRAAVRAVEAGESLPVPS-----DPQKR-LALEHSLPDWLVAE 184
Query: 237 WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIR 296
+G E L +N P LR N R +R L+ L + + L + +
Sbjct: 185 LWGQIGPERTEALAAASNRIPPLDLRCN-RLRSSREALLENLPAVAL-----AELPDGLT 238
Query: 297 VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS 356
+ + + Q EG VQD +A + ++DP+PGQ ++D CAAPGGKT ++A +
Sbjct: 239 LTSRPGPLPQLAGFSEGQWCVQDRAAQRIAPLLDPKPGQRVLDACAAPGGKTTHIAELMG 298
Query: 357 GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSG 416
QG V A+D+ RL+ ++ A+ + S IRT AD D D+VLLD PCSG
Sbjct: 299 DQGEVVAVDVAPRRLQQVSANAERLGL-SCIRTEAADATDLTDWEAESFDRVLLDVPCSG 357
Query: 417 LGVLSK 422
LG L++
Sbjct: 358 LGTLAR 363
>gi|422346411|ref|ZP_16427325.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens WAL-14572]
gi|373225956|gb|EHP48283.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens WAL-14572]
Length = 442
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 98/328 (29%), Positives = 165/328 (50%), Gaps = 15/328 (4%)
Query: 96 VERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILR 155
+E F + D+D +D L+T++V GTI++++ +D ++ D ++ ++ ILR
Sbjct: 23 IEINKQFASNDIDPKDKGLITEVVYGTIKYKKMIDIILSNFVAD---IGKIDESVVNILR 79
Query: 156 IGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG 214
Y++ LD +PPYA+V+E V L K P VNG+LR L++ N L
Sbjct: 80 SAIYQMKFLDRVPPYAIVNEAVNLTK-ETEPNLAKFVNGVLRNY--LRNENKNFKVGLRN 136
Query: 215 NDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL 274
N+ AL +S WM+ + K G+E+A++++ N+ P ++R N+ K ++
Sbjct: 137 NE-----ALCYDFSFDRWMIEMFIKQYGKEDALRILRGLNTVPYVTVRVNTCKA-DYDEV 190
Query: 275 VMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 334
+L E E I +K G + + L +EGL VQDESA LV + D +
Sbjct: 191 YERLEEEGYDIEEGAFSPEAIIIKKG-SAIEKNKLYQEGLITVQDESAMLVAPLFDLKGD 249
Query: 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 394
+ ++D C+APG K ++ + +G V A DI+ +L ++ E + +V + D
Sbjct: 250 EQVMDLCSAPGTKATHIGELMMNKGKVVAFDIHDHKLALIKENIDRLGLTNVEVEL-GDA 308
Query: 395 RTFADNSTVKCDKVLLDAPCSGLGVLSK 422
D+VLLD PCSGLG++ K
Sbjct: 309 TKINSKYINWADRVLLDVPCSGLGIIRK 336
>gi|422874661|ref|ZP_16921146.1| 16S rRNA methyltransferase B [Clostridium perfringens F262]
gi|380304302|gb|EIA16591.1| 16S rRNA methyltransferase B [Clostridium perfringens F262]
Length = 442
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 165/329 (50%), Gaps = 17/329 (5%)
Query: 96 VERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILR 155
+E F + D+D +D L+T++V GTI++++ +D ++ D ++ ++ ILR
Sbjct: 23 IEINKQFASNDIDPKDKGLITEVVYGTIKYKKMIDIILSSFVAD---IGKIDESVVNILR 79
Query: 156 IGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG 214
Y++ LD +PPYA+V+E V L K P VNG+LR L++ N L
Sbjct: 80 SAIYQMKFLDRVPPYAIVNEAVNLTK-ETEPNLAKFVNGVLRNY--LRNENKNFKVGLRN 136
Query: 215 NDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL 274
N+ AL +S WM+ + K G+E+A++++ N+ P ++R N+ K ++
Sbjct: 137 NE-----ALCYDFSFDRWMIEMFIKQYGKEDALRILRGLNTVPYVTVRVNTCKA-DYDEV 190
Query: 275 VMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 334
+L E E I +K G + + L +EGL VQDESA LV + D +
Sbjct: 191 YERLEEEGYDIEEGAFSPEAIIIKKG-SAIERNKLYQEGLITVQDESAMLVAPLFDLKGD 249
Query: 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHAD 393
+ ++D C+APG K ++ + +G V A DI+ +L ++ E +L N + D
Sbjct: 250 EQVMDLCSAPGTKATHIGELMMNKGKVVAFDIHDHKLALIKENIDRLGLTNVEVEL--GD 307
Query: 394 LRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
D+VLLD PCSGLG++ K
Sbjct: 308 ATKINSKYINWADRVLLDVPCSGLGIIRK 336
>gi|110800441|ref|YP_696427.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens ATCC 13124]
gi|110675088|gb|ABG84075.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens ATCC 13124]
Length = 442
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 165/329 (50%), Gaps = 17/329 (5%)
Query: 96 VERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILR 155
+E F + D+D +D L+T++V GTI++++ +D ++ D ++ ++ ILR
Sbjct: 23 IEINKQFASNDIDPKDKGLITEVVYGTIKYKKMIDIILSSFVAD---IGKIDESVVNILR 79
Query: 156 IGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG 214
Y++ LD +PPYA+V+E V L K P VNG+LR L++ N L
Sbjct: 80 SAIYQMKFLDRVPPYAIVNEAVNLTK-ETEPNLAKFVNGVLRNY--LRNENKNFKVGLRN 136
Query: 215 NDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL 274
N+ AL +S WM+ + K G+E+A++++ N+ P ++R N+ K ++
Sbjct: 137 NE-----ALCYDFSFDRWMIEMFIKQYGKEDALRILRGLNTVPYVTVRVNTCKA-DYDEV 190
Query: 275 VMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 334
+L E E I +K G + + L +EGL VQDESA LV + D +
Sbjct: 191 YERLEEEGYDIEEGAFSPEAIIIKKG-SAIEKNKLYQEGLITVQDESAMLVAPLFDLRGD 249
Query: 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHAD 393
+ ++D C+APG K ++ + +G V A DI+ +L ++ E +L N + D
Sbjct: 250 EQVMDLCSAPGTKATHIGELMMNKGKVVAFDIHDHKLALIKENIDRLGLTNVEVEL--GD 307
Query: 394 LRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
D+VLLD PCSGLG++ K
Sbjct: 308 ATKINSKYINWADRVLLDVPCSGLGIIRK 336
>gi|57642239|ref|YP_184717.1| tRNA/rRNA cytosine-C5-methylase NOL1/NOP2/Sun family protein
[Thermococcus kodakarensis KOD1]
gi|57160563|dbj|BAD86493.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, fused to
N-terminal NusB regulator domain [Thermococcus
kodakarensis KOD1]
Length = 450
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 95/303 (31%), Positives = 152/303 (50%), Gaps = 26/303 (8%)
Query: 124 RWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVAL 183
+WR +D +I + K ++P L +LRIG +EI +PP D VR+ K
Sbjct: 59 KWRAKIDFIINSVLKGSKV-EDLDPYLANLLRIGTFEIHFRKVPPALATDSIVRVVKEKF 117
Query: 184 RPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQ 243
VN ++ ++ K + L +L+ DR + L+ +SHP W V G
Sbjct: 118 DFSRAKFVNALMHEIE--KFDVERALKRLKEKDRIEW--LSVRFSHPRWYVEYVINLFGY 173
Query: 244 EEAIKLMVWNNSDPSFSLRANSRKGVTRADLV--------MQLNLLKVPHELSLHLDEFI 295
+EA++L++ NN + +RAN+ K T D + ++ L VP L + +
Sbjct: 174 DEAVRLLLSNNRPQRYYVRANTLK--TDIDSLRDYLEENGVRTALTPVPDVLKV-----L 226
Query: 296 RVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL 355
KT V + KEG +QD ++ V V+ P+PG+ ++D AAPG KT + A+ +
Sbjct: 227 EYKTP---VTRLDWYKEGKFVIQDLASAYVAHVLSPEPGERLLDLAAAPGSKTFHAAALM 283
Query: 356 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCS 415
+G + A+D + RL + E AK+ V +V R +HAD ++F D K DK++LDAPCS
Sbjct: 284 ENKGEIVAVDYSYDRLMRMKEKAKVLGVKNV-RFVHADGQSFRDKE--KFDKIILDAPCS 340
Query: 416 GLG 418
G
Sbjct: 341 SSG 343
>gi|420156785|ref|ZP_14663625.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
MSTE9]
gi|394756795|gb|EJF39854.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
MSTE9]
Length = 447
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 108/341 (31%), Positives = 172/341 (50%), Gaps = 24/341 (7%)
Query: 90 DNEMGY----VERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSS 145
D GY +++TL R L+ RD L T + G + R LD++I +
Sbjct: 17 DENEGYSNIVIDKTL--RRFSLEPRDAALATALFYGVLERRITLDYVIEAFSRNRGQI-- 72
Query: 146 MEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDN 204
+ P + +ILRIG Y+I+ ++ +P A V+E V AK +NG+LR + L+
Sbjct: 73 LSPTVREILRIGVYQILYMEKIPTSAAVNEAVNCAKENGAVKVSGFINGLLRSV--LRAE 130
Query: 205 NSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN 264
L LP R +AL+ YS P W++ WTK G+ ++ R N
Sbjct: 131 QPLRLPD---EKRQPLKALSVRYSCPEWLIDLWTKTYGEPLCHAILDSLFQKAPIYARVN 187
Query: 265 SRKGVTRADLVMQLNLLKV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAG 323
+ K +T +L+ +L V ++ D I TG +++ +EGL +QD S+
Sbjct: 188 TVK-ITAEELIQRLEQEGVKATAITAVPDALILQNTGAVASLES--FQEGLFHIQDLSSQ 244
Query: 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV 383
L A++DPQPG+ I+D CAAPGGK+ MA + +G + A D +G++ ++ + A+
Sbjct: 245 LCCALIDPQPGERIIDVCAAPGGKSFTMAERMENRGELLAFDKYRGKVGLIRQGAERLGF 304
Query: 384 NSVIRTIHADLRTFADNSTV--KCDKVLLDAPCSGLGVLSK 422
SVIR A +R A+ V ++VL DAPCSGLG++ +
Sbjct: 305 -SVIR---ASVRDAAEPKEVLAPANRVLCDAPCSGLGIIRR 341
>gi|386714212|ref|YP_006180535.1| Sun protein [Halobacillus halophilus DSM 2266]
gi|384073768|emb|CCG45261.1| Sun protein [Halobacillus halophilus DSM 2266]
Length = 450
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 100/346 (28%), Positives = 177/346 (51%), Gaps = 23/346 (6%)
Query: 79 DLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH 138
DLL + G+ G +V ++L +D L+T+IV GT++ R +D+ +
Sbjct: 12 DLLTRIGEQGG---FSHVLLDREITKQELSRQDGALLTEIVYGTLQRRDLIDYYVQPFVA 68
Query: 139 DEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRK 197
+K ++P + +L + Y++ L+ +P +A++ E V ++K G + NG+LR
Sbjct: 69 KQK---KIKPWVRWLLYMSVYQMEFLERVPDHAIIHEAVEISKRRGHKGISSFTNGVLRS 125
Query: 198 LVL--LKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNS 255
+ L+ + + P LA SHP W+V+RW G+ ++ N
Sbjct: 126 VQRKGLRSLDEIEEP---------VERLAIETSHPAWLVKRWMDQYGRSITEEMCRANMQ 176
Query: 256 DPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLC 315
S+R + ++R + + QL E SL + + V G +++ L EG
Sbjct: 177 HLPLSVRVQPLR-ISRLEAMEQLREDGFKVEESLLSPQGMVVSEG--QLLKHSLFTEGKV 233
Query: 316 AVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN 375
+QD+S+ LV ++D + G +I+D C+APGGKT ++A + +G + A D++ + +++N
Sbjct: 234 TIQDQSSMLVAEMMDLEKGMTILDACSAPGGKTTHIAEKMEDEGEIVAYDLHVKKAKLVN 293
Query: 376 ETAKLHQVNSVIRTIHADLRTFAD-NSTVKCDKVLLDAPCSGLGVL 420
+ A+ Q+ S I+ AD R AD + D++LLDAPCSGLGVL
Sbjct: 294 KKAEQLQLTS-IQASQADSRNLADLHEAASFDRILLDAPCSGLGVL 338
>gi|227513475|ref|ZP_03943524.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus buchneri
ATCC 11577]
gi|227083348|gb|EEI18660.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus buchneri
ATCC 11577]
Length = 444
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 116/357 (32%), Positives = 172/357 (48%), Gaps = 36/357 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDH-LICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+ D D L T+IV G I+ R L++ L+ L EKT E + ++L Y++ LD
Sbjct: 38 MSDVDKALFTNIVYGVIQHRMTLEYQLVPFLKDPEKT----EDWVKELLYTAMYQLEYLD 93
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGIL----RKLVLLKDNNSLPLPKLEGNDRAQA 220
+P A+ DE++++AK G V GIL RK V D P+ K+
Sbjct: 94 RVPKRAIFDESIKIAKSMGHDGTRRFVTGILHQMDRKGVREPDKIKDPVKKI-------- 145
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
+ YS P W+V LG+++A ++ N P S+R N K T++ L QL
Sbjct: 146 ---SIKYSVPEWLVSLIEGQLGKQKADQVFKSLNQTPKQSVRFNKAK-TTKSKLTDQLTQ 201
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
E SL E I V G V+ + + GL +QDESA L V + QP I+D
Sbjct: 202 AGFQTEDSLVAGEGIIVDKG--QVVHSAFFENGLLTIQDESAMLPVESMSIQPDDLILDA 259
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
C+APGGKT +A+ L G V A+DI++ +L+ + AK V+ V+ T D R +
Sbjct: 260 CSAPGGKTTQIAANLKN-GRVIALDIHQNKLKNVIRNAKRLGVDGVVETQALDARKVDEK 318
Query: 401 -STVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
S D +L+DAPCSG G++ R +RY KT + HL + + +L
Sbjct: 319 FSDEMFDHILVDAPCSGFGLM----------RRKPEIRYDKTLADINHLSQIQLQIL 365
>gi|290893049|ref|ZP_06556038.1| sun protein [Listeria monocytogenes FSL J2-071]
gi|404408266|ref|YP_006690981.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes
SLCC2376]
gi|422410069|ref|ZP_16487030.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes FSL F2-208]
gi|290557409|gb|EFD90934.1| sun protein [Listeria monocytogenes FSL J2-071]
gi|313608142|gb|EFR84195.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes FSL F2-208]
gi|404242415|emb|CBY63815.1| putative tRNA and rRNA cytosine-C5-methylase [Listeria
monocytogenes SLCC2376]
Length = 444
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 103/361 (28%), Positives = 186/361 (51%), Gaps = 34/361 (9%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGF 158
+ + L+ D L+T++V GT + + LD+ + F + EP + +LR+
Sbjct: 32 ALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLA-------PFLNKEPDNWVKNLLRMSV 84
Query: 159 YEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG-ND 216
Y++ LD +P +A+++E +AK G VNG+LR ++ +P ++ D
Sbjct: 85 YQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRNVI------RKGVPSIDAIKD 138
Query: 217 RAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM 276
Q A+ T S P W+ +RW G E+ ++ + P S+R N + + L+
Sbjct: 139 PVQKIAVET--SLPEWLAKRWADQYGIEKLREIGLAFLVAPHQSIRVNQTE-IPTEQLIK 195
Query: 277 QLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 336
+LN + + ++E + V+ G +V + K+G C++QDES+ L + + +
Sbjct: 196 ELNDQGITVTRNEFIEEALLVEKG--SVAETKAYKDGKCSIQDESSMLAAYALQLEDNLT 253
Query: 337 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396
++D CAAPGGKT ++A + G G+V+A+DI++ + +++++ AK Q+ + IRT H D RT
Sbjct: 254 VLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQAAKRLQLLN-IRTAHLDART 312
Query: 397 FADNSTVKC-DKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLL 455
+ + D++L+DAPCSG GVL R ++Y KT + L E + +
Sbjct: 313 ASTMFEPETFDRILVDAPCSGFGVL----------RRKPDIKYAKTEKDIHKLAEIQLAI 362
Query: 456 L 456
L
Sbjct: 363 L 363
>gi|46908054|ref|YP_014443.1| sun protein [Listeria monocytogenes serotype 4b str. F2365]
gi|47093059|ref|ZP_00230837.1| sun protein [Listeria monocytogenes str. 4b H7858]
gi|254826136|ref|ZP_05231137.1| sun protein [Listeria monocytogenes FSL J1-194]
gi|254852729|ref|ZP_05242077.1| sun protein [Listeria monocytogenes FSL R2-503]
gi|254933294|ref|ZP_05266653.1| sun protein [Listeria monocytogenes HPB2262]
gi|300763865|ref|ZP_07073862.1| sun protein [Listeria monocytogenes FSL N1-017]
gi|404281435|ref|YP_006682333.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes
SLCC2755]
gi|404287251|ref|YP_006693837.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|405750174|ref|YP_006673640.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes ATCC
19117]
gi|405753049|ref|YP_006676514.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes
SLCC2378]
gi|405755983|ref|YP_006679447.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes
SLCC2540]
gi|424714697|ref|YP_007015412.1| Ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes serotype 4b str. LL195]
gi|424823583|ref|ZP_18248596.1| Ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes str. Scott A]
gi|46881324|gb|AAT04620.1| sun protein [Listeria monocytogenes serotype 4b str. F2365]
gi|47018560|gb|EAL09315.1| sun protein [Listeria monocytogenes serotype 4b str. H7858]
gi|258606052|gb|EEW18660.1| sun protein [Listeria monocytogenes FSL R2-503]
gi|293584854|gb|EFF96886.1| sun protein [Listeria monocytogenes HPB2262]
gi|293595376|gb|EFG03137.1| sun protein [Listeria monocytogenes FSL J1-194]
gi|300515601|gb|EFK42651.1| sun protein [Listeria monocytogenes FSL N1-017]
gi|332312263|gb|EGJ25358.1| Ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes str. Scott A]
gi|404219374|emb|CBY70738.1| tRNA and rRNA cytosine-C5-methylase, putative [Listeria
monocytogenes ATCC 19117]
gi|404222249|emb|CBY73612.1| putative tRNA and rRNA cytosine-C5-methylase [Listeria
monocytogenes SLCC2378]
gi|404225183|emb|CBY76545.1| putative tRNA and rRNA cytosine-C5-methylase [Listeria
monocytogenes SLCC2540]
gi|404228070|emb|CBY49475.1| putative tRNA and rRNA cytosine-C5-methylase [Listeria
monocytogenes SLCC2755]
gi|404246180|emb|CBY04405.1| tRNA and rRNA cytosine-C5-methylase, putative [Listeria
monocytogenes serotype 7 str. SLCC2482]
gi|424013881|emb|CCO64421.1| Ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes serotype 4b str. LL195]
Length = 444
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 103/361 (28%), Positives = 186/361 (51%), Gaps = 34/361 (9%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGF 158
+ + L+ D L+T++V GT + + LD+ + F + EP + +LR+
Sbjct: 32 ALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLA-------PFLNKEPDNWVKNLLRMSV 84
Query: 159 YEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG-ND 216
Y++ LD +P +A+++E +AK G VNG+LR ++ +P ++ D
Sbjct: 85 YQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRNVI------RKGVPSIDAIKD 138
Query: 217 RAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM 276
Q A+ T S P W+ +RW G E+ ++ + P S+R N + + L+
Sbjct: 139 PVQKIAVET--SLPEWLAKRWADQYGIEKLREIGLAFLVAPHQSIRVNQTE-IPTEQLIK 195
Query: 277 QLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 336
+LN + + ++E + V+ G +V + K+G C++QDES+ L + + +
Sbjct: 196 ELNDQGITVTRNEFIEEALLVEKG--SVAETKAYKDGKCSIQDESSMLAAYALQLEDNLT 253
Query: 337 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396
++D CAAPGGKT ++A + G G+V+A+DI++ + +++++ AK Q+ + IRT H D RT
Sbjct: 254 VLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQAAKRLQLLN-IRTAHLDART 312
Query: 397 FADNSTVKC-DKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLL 455
+ + D++L+DAPCSG GVL R ++Y KT + L E + +
Sbjct: 313 ASTMFEPETFDRILVDAPCSGFGVL----------RRKPDIKYAKTEKDIHKLAEIQLAI 362
Query: 456 L 456
L
Sbjct: 363 L 363
>gi|410460745|ref|ZP_11314418.1| 16S rRNA methyltransferase B [Bacillus azotoformans LMG 9581]
gi|409926675|gb|EKN63831.1| 16S rRNA methyltransferase B [Bacillus azotoformans LMG 9581]
Length = 446
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 102/366 (27%), Positives = 188/366 (51%), Gaps = 36/366 (9%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ L+ I+ A+++LL N+M + + L +D+ L+T+IV
Sbjct: 6 REVALDTLLHIEKNQAYSNLLL--------NQM--------IKKEKLSSKDVGLLTEIVY 49
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GT++ + LD+ + +K +E ++ +LR+ Y++V LD +P AV+ E V +A
Sbjct: 50 GTVQRKLALDYYLQPFLKKQK---KLELWVMILLRLSLYQMVYLDRIPERAVIHEAVEIA 106
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
K G +VNG+LR + LP + +D + L+ S P+W++++W +
Sbjct: 107 KKRGHRGISGMVNGVLRSI----QREGLPDFNVIKDDLER---LSIEMSLPLWLLQKWAE 159
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA--DLVMQLNLLKVPHELSLHLDEFIRV 297
G + ++ P S R N K L+ + N++ LS+ + I +
Sbjct: 160 QYGLDVTKEICKSTLEPPMVSARVNCNKAAVPEVLSLLEEENVVAEKGNLSI---DAILI 216
Query: 298 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSG 357
G N+ + +EG +QDES+ LV + PQ G ++D CAAPGGKT ++A L
Sbjct: 217 SNG--NLATTKMFQEGYVTIQDESSMLVARALGPQKGDKVLDSCAAPGGKTTHIAELLGN 274
Query: 358 QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSG 416
G V ++D++ +++++ E K ++ +V T+ +D R ++ ++ + D++L+DAPCSG
Sbjct: 275 DGKVISVDLHPHKVKLIEEQVKRLKLTNV-ETLVSDSRHLQEHFNSEEFDRILVDAPCSG 333
Query: 417 LGVLSK 422
GV+ +
Sbjct: 334 FGVIRR 339
>gi|227510466|ref|ZP_03940515.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus brevis
subsp. gravesensis ATCC 27305]
gi|227190118|gb|EEI70185.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus brevis
subsp. gravesensis ATCC 27305]
Length = 444
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 114/354 (32%), Positives = 174/354 (49%), Gaps = 30/354 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDH-LICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+ D D L T+IV G I+ R L++ L+ L EKT E + ++L Y++ LD
Sbjct: 38 MSDVDKALFTNIVYGVIQHRMTLEYQLVPFLRDPEKT----EDWVKELLYTAMYQLEYLD 93
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLP-KLEGNDRAQARAL 223
+P A+ DE++++AK G V GIL ++ D + P K+E + +
Sbjct: 94 RVPKRAIFDESIKIAKSMGHDGTRRFVTGILHQM----DRKGVREPDKIED----PVKKI 145
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
+ YS P W+V LG+++A ++ N P S+R N K T++ L QL
Sbjct: 146 SIKYSVPEWLVSLIEGQLGKQKADQVFKSLNQAPKQSVRFNKAK-TTKSKLTDQLTQAGF 204
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
E SL E I V G V+ + + GL +QDESA L V + QP I+D C+A
Sbjct: 205 QTEDSLVAGEGIIVDKG--QVVHSAFFENGLLTIQDESAMLPVESMSIQPDDLILDACSA 262
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-ST 402
PGGKT +A+ L G V A+DI++ +L+ + AK V+ V+ T D R + S
Sbjct: 263 PGGKTTQIAADLKN-GRVIALDIHQNKLKNVIRNAKRLGVDGVVETQALDARKVDEKFSD 321
Query: 403 VKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
D +L+DAPCSG G++ R +RY KT + HL + + +L
Sbjct: 322 EMFDHILVDAPCSGFGLM----------RRKPEIRYDKTLADINHLSQIQLQIL 365
>gi|335047382|ref|ZP_08540403.1| ribosomal RNA small subunit methyltransferase B [Parvimonas sp.
oral taxon 110 str. F0139]
gi|333761190|gb|EGL38745.1| ribosomal RNA small subunit methyltransferase B [Parvimonas sp.
oral taxon 110 str. F0139]
Length = 434
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 97/326 (29%), Positives = 165/326 (50%), Gaps = 16/326 (4%)
Query: 100 LGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFY 159
L TK++ D D + + +IV GT+ R YLD++I LC + P +L ILRI Y
Sbjct: 23 LNKNTKNISDLDSKFLREIVYGTLENRIYLDYIIKKLC--KLRIKKFNPYILNILRISIY 80
Query: 160 EIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRA 218
+I+ +D +P +A+++E V L KV + VNG LR + N K++ +D
Sbjct: 81 QIIFMDKIPEFAIINEAVNLTKVFKLKKFSSFVNGSLRNFL----RNKEDFIKIKADDVE 136
Query: 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL 278
+A ++ YS + +V+ G+EE IK++ + S P F +R +S + T +V L
Sbjct: 137 EAISIK--YSANMDIVKILLSDYGREETIKILENSISKPHFVIRISSFEK-TEEKVVKDL 193
Query: 279 NL--LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 336
K+ L F+ T N+++ K G VQD + L V+ P+
Sbjct: 194 EKDGYKLKKSEISKLTYFVENPT---NILETESFKIGDFTVQDVGSILTGEVLSPKENSK 250
Query: 337 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396
++D C+APGGKT ++A + G ++A DI K +L+ + E K + +V + ++ D
Sbjct: 251 VLDICSAPGGKTCHLAFQMKNSGEIFANDIVKTKLKKIEENCKRLNIKNV-KLLNFDASI 309
Query: 397 FADNSTVKCDKVLLDAPCSGLGVLSK 422
+ + + D +L D CSG+GV+ +
Sbjct: 310 YKEEYKEQFDYILCDVICSGIGVMDR 335
>gi|18310723|ref|NP_562657.1| RNA-binding Sun protein [Clostridium perfringens str. 13]
gi|18145404|dbj|BAB81447.1| probable RNA-binding Sun protein [Clostridium perfringens str. 13]
Length = 442
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 97/329 (29%), Positives = 165/329 (50%), Gaps = 17/329 (5%)
Query: 96 VERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILR 155
+E F + D+D +D L+T++V GTI++++ +D ++ D ++ ++ ILR
Sbjct: 23 IEINKQFASNDIDPKDKGLITEVVYGTIKYKKMIDIILSSFVAD---IGKIDESVVNILR 79
Query: 156 IGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG 214
Y++ LD +PPYA+V+E V L K P +NG+LR L++ N L
Sbjct: 80 SAIYQMKFLDRVPPYAIVNEAVNLTK-ETEPNLAKFINGVLRNY--LRNENKNFKVGLRN 136
Query: 215 NDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL 274
N+ AL +S WM+ + K G+E+A++++ N+ P ++R N+ K ++
Sbjct: 137 NE-----ALCYDFSFDRWMIEMFIKQYGKEDALRILRGLNTVPYVTVRVNTCKA-DYDEV 190
Query: 275 VMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 334
+L E E I +K G + + L +EGL VQDESA LV + D +
Sbjct: 191 YERLEEEGYDIEEGAFSPEAIIIKKG-SAIEKNKLYQEGLITVQDESAMLVAPLFDLKGD 249
Query: 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHAD 393
+ ++D C+APG K ++ + +G V A DI+ +L ++ E +L N + D
Sbjct: 250 EQVMDLCSAPGTKATHIGELMMNKGKVVAFDIHDHKLALIKENIDRLGLTNVEVEL--GD 307
Query: 394 LRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
D++LLD PCSGLG++ K
Sbjct: 308 ATKINSKYINWADRILLDVPCSGLGIIRK 336
>gi|315282824|ref|ZP_07871146.1| ribosomal RNA small subunit methyltransferase B [Listeria marthii
FSL S4-120]
gi|313613532|gb|EFR87354.1| ribosomal RNA small subunit methyltransferase B [Listeria marthii
FSL S4-120]
Length = 400
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 101/348 (29%), Positives = 181/348 (52%), Gaps = 34/348 (9%)
Query: 114 LVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGFYEIVKLD-MPPYA 170
++T++V GT + + LD+ + F + EP + +LR+ Y++ LD +P +A
Sbjct: 1 MLTELVYGTTQRKITLDYYLA-------PFLNKEPDNWVKNLLRMSVYQLTFLDKVPEHA 53
Query: 171 VVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG-NDRAQARALATIYSH 229
+++E +AK G VNG+LR ++ +P ++ D Q A+ T S
Sbjct: 54 ILNEAGDIAKDLGHQGVTKFVNGVLRNVI------RKGVPSIDAIKDPVQKIAVET--SL 105
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSL 289
P W+ +RW G E+ ++ + P S+R N + + L+ +LN + +
Sbjct: 106 PEWLAKRWADQYGLEKLREIGLAFLVAPHQSIRVNQTE-IPTEQLIKELNDQGISVTRNE 164
Query: 290 HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 349
+DE + V+ G +V + K+G C++QDES+ L + + +++D CAAPGGKT
Sbjct: 165 FIDEALLVEKG--SVAETKAYKDGKCSIQDESSMLAAYALQLEDNLTVLDACAAPGGKTT 222
Query: 350 YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKV 408
++A + G G+V+A+DI++ + +++++ AK Q+ + IRT H D RT + + D++
Sbjct: 223 HIAEKMHGTGMVHALDIHEKKTKLIDQAAKRLQLLN-IRTAHLDARTASTMFEPETFDRI 281
Query: 409 LLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
L+DAPCSG GVL R ++Y KT + L E + +L
Sbjct: 282 LVDAPCSGFGVL----------RRKPDIKYAKTEKDIHKLAEIQLAIL 319
>gi|255522012|ref|ZP_05389249.1| sun protein [Listeria monocytogenes FSL J1-175]
Length = 444
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 103/361 (28%), Positives = 186/361 (51%), Gaps = 34/361 (9%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGF 158
+ + L+ D L+T++V GT + + LD+ + F + EP + +LR+
Sbjct: 32 ALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLA-------PFLNKEPDNWVKNLLRMSV 84
Query: 159 YEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG-ND 216
Y++ LD +P +A+++E +AK G VNG+LR ++ +P ++ D
Sbjct: 85 YQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRNVI------RKGVPSIDAIKD 138
Query: 217 RAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM 276
Q A+ T S P W+ +RW G E+ ++ + P S+R N + + L+
Sbjct: 139 PVQKIAVET--SLPEWLAKRWADQYGIEKLREIGLAFLVAPHQSIRVNQTE-IPTEQLIK 195
Query: 277 QLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 336
+LN + + ++E + V+ G +V + K+G C++QDES+ L + + +
Sbjct: 196 ELNDQGITVTRNEFIEEALLVEKG--SVAETKAYKDGKCSIQDESSMLAAYALQLEDNLT 253
Query: 337 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396
++D CAAPGGKT ++A + G G+V+A+DI++ + +++++ AK Q+ + IRT H D RT
Sbjct: 254 VLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQAAKRLQLLN-IRTAHLDART 312
Query: 397 FADNSTVKC-DKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLL 455
+ + D++L+DAPCSG GVL R ++Y KT + L E + +
Sbjct: 313 ASTMFEPETFDRILVDAPCSGFGVL----------RRKPDIKYAKTEKDIHKLAEIQLAI 362
Query: 456 L 456
L
Sbjct: 363 L 363
>gi|145219990|ref|YP_001130699.1| sun protein [Chlorobium phaeovibrioides DSM 265]
gi|145206154|gb|ABP37197.1| sun protein [Chlorobium phaeovibrioides DSM 265]
Length = 445
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 105/326 (32%), Positives = 161/326 (49%), Gaps = 42/326 (12%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLIC-LLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPP 168
D T +V G +R+R LD +I H+ + S P + ILR+G ++++ LD +P
Sbjct: 39 DRAFATSLVNGVLRYRLQLDFVIGHFYSHNLQKAS---PAIRNILRLGAWQLLFLDRVPA 95
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA--LATI 226
+AVV+E+VRLA+ LVN +LRK+ S LE RA A LA
Sbjct: 96 WAVVNESVRLARRFKGERMAKLVNAVLRKI-------SPETIHLEEWTRAMEPAARLALR 148
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHE 286
YSHP +V+ W G + A ++ ++N P F R NS K T +D
Sbjct: 149 YSHPEELVKEWIAAYGTQRAESMLRYDNESPWFGFRINSLK--TDSDRFFT--------- 197
Query: 287 LSLHLDEFIRVKTGLQNVIQAG-------LLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 339
E R+ +GL+ + + L+ GL +VQ+ + L +++P PG ++D
Sbjct: 198 -QTGTTEVARLDSGLRKLFLSQDFSPFEVPLQNGLVSVQNPTQLLACLLLNPTPGSEVLD 256
Query: 340 CCAAPGGKTLYMASCLSGQGLVYAIDINK---GRLRILNETAKLHQVNSVIRTIHADLRT 396
CAAPGGKT +A + +G + A+DI + ++R L ET + S+I + D R+
Sbjct: 257 MCAAPGGKTAALAELMGNEGHITALDIYEQKTNKIRRLAETLGI----SIITALTDDARS 312
Query: 397 FADNSTVKCDKVLLDAPCSGLGVLSK 422
F D +LLDAPC+G GVL +
Sbjct: 313 FI--PPTPPDAILLDAPCTGTGVLGR 336
>gi|168207268|ref|ZP_02633273.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens E str. JGS1987]
gi|169342659|ref|ZP_02629420.2| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens C str. JGS1495]
gi|169299165|gb|EDS81235.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens C str. JGS1495]
gi|170661376|gb|EDT14059.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens E str. JGS1987]
Length = 442
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 98/328 (29%), Positives = 164/328 (50%), Gaps = 15/328 (4%)
Query: 96 VERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILR 155
+E F + D+D +D L+T++V GTI++++ +D ++ D ++ ++ ILR
Sbjct: 23 IEINKQFASNDIDPKDKGLITEVVYGTIKYKKMIDIILSSFVAD---IGKIDESVVNILR 79
Query: 156 IGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG 214
Y++ LD +PPYA+V+E V L K P VNG+LR L++ N L
Sbjct: 80 SAIYQMKFLDRVPPYAIVNEAVNLTK-ETEPNLAKFVNGVLRNY--LRNENKNFKVGLRN 136
Query: 215 NDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL 274
N+ AL +S WM+ + K G+E A++++ N+ P ++R N+ K ++
Sbjct: 137 NE-----ALCYDFSFDRWMIEMFIKQYGKEYALRILRGLNTIPYVTVRVNTCKA-DYDEV 190
Query: 275 VMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 334
+L E E I +K G + + L +EGL VQDESA LV + D +
Sbjct: 191 YERLEEEGYDIEEGAFSPEAIIIKKG-SAIEKNKLYQEGLITVQDESAMLVAPLFDLKGD 249
Query: 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 394
+ ++D C+APG K ++ + +G V A DI+ +L ++ E + +V + D
Sbjct: 250 EQVMDLCSAPGTKATHIGELMMNKGKVVAFDIHDHKLALIKENIDRLGLTNVEVEL-GDA 308
Query: 395 RTFADNSTVKCDKVLLDAPCSGLGVLSK 422
D+VLLD PCSGLG++ K
Sbjct: 309 TKINSKYINWADRVLLDVPCSGLGIIRK 336
>gi|409349310|ref|ZP_11232802.1| RNA methyltransferase Sun [Lactobacillus equicursoris CIP 110162]
gi|407878247|emb|CCK84860.1| RNA methyltransferase Sun [Lactobacillus equicursoris CIP 110162]
Length = 438
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 106/315 (33%), Positives = 161/315 (51%), Gaps = 24/315 (7%)
Query: 113 RLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAV 171
RL T++V GT++ + YLD+ + L + + +EPLLL + Y+++ LD +P AV
Sbjct: 42 RLATNLVYGTLQNKLYLDYQLKGLVKAKLKEAYIEPLLL----MSIYQLLFLDKVPARAV 97
Query: 172 VDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
+DE +LAK +P + LVNGILR LPK + D L+ YS
Sbjct: 98 LDEANKLAKAFGKPKSSGYRLVNGILRSF----QRRGTILPKEDDPDY-----LSVKYSE 148
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV-PHELS 288
P W+ G + A K+M N+ +R ++ V +V L P E +
Sbjct: 149 PKWLADYLVANWGPKRAEKIMASFNTHAKNEIRISNL--VKEGQVVYDLKKAHFNPVESA 206
Query: 289 LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKT 348
L + + G +I KEG VQDE+A LV D + ++D CAAPGGKT
Sbjct: 207 LADRSYSLSRGG---IILTDFFKEGQVTVQDEAASLVAEAFDFTGNERVLDSCAAPGGKT 263
Query: 349 LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDK 407
+ +A +S +G V A+DI++ +LR++ E A+ QV ++T D R S + DK
Sbjct: 264 IQLAEKVS-EGQVTALDIHEKKLRLVRENAQRMQVADRVKTKALDARKAGGYFSKGEFDK 322
Query: 408 VLLDAPCSGLGVLSK 422
+L+DAPCSGLG+L +
Sbjct: 323 ILIDAPCSGLGLLRR 337
>gi|154685990|ref|YP_001421151.1| RsmB [Bacillus amyloliquefaciens FZB42]
gi|154351841|gb|ABS73920.1| RsmB [Bacillus amyloliquefaciens FZB42]
Length = 447
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 169/323 (52%), Gaps = 16/323 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+T L D+D L+T++V GT++ + LD+++ S ++Q+LR+ Y++
Sbjct: 32 IKTNTLSDQDRGLLTELVYGTLQNKIALDYMLKPFIRKPNKVKSW---VIQLLRLSAYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK G + VNGILR L +P +
Sbjct: 89 EYLEKIPDRAAIHEAVEIAKKRGHKGIASFVNGILRSL------QREGVPSFAEIEDPVL 142
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R L+T SHP W+V+ W + G E A K+ + P +LR N K R ++ ++
Sbjct: 143 R-LSTETSHPEWLVKEWVEAYGFEAAEKICRIHLIPPKQTLRVNHIKS-DRETVLNEMEN 200
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ E + I++ G ++ + G ++QDES+ LV +DP+PG++++D
Sbjct: 201 AGLEAEAGDLSPDAIKLLKG--SIANTAFFQNGRVSIQDESSMLVARALDPKPGETVLDA 258
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
CAAPGGK+ ++A + +G + ++D+++ +++++ E A+ + ++I D R +
Sbjct: 259 CAAPGGKSAHIAELMENEGSLTSLDLHRHKVKLIKEGAERLGL-TIIDAQTMDARKAGEA 317
Query: 401 -STVKCDKVLLDAPCSGLGVLSK 422
+ D+VL+DAPCSG GV+ +
Sbjct: 318 FGAERFDRVLVDAPCSGFGVIRR 340
>gi|325680270|ref|ZP_08159830.1| ribosomal RNA small subunit methyltransferase B [Ruminococcus albus
8]
gi|324107979|gb|EGC02235.1| ribosomal RNA small subunit methyltransferase B [Ruminococcus albus
8]
Length = 429
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 98/318 (30%), Positives = 160/318 (50%), Gaps = 15/318 (4%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
D D RD + ++ + G + R LD +I L + K + + L ILR G Y++ +D
Sbjct: 34 DFDKRDKKFISALFYGVLERRLTLDAMIAELSKNPK--NKLNNTLRNILRSGLYQLKYMD 91
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P A VDE+V +AK P + VNG+LR+ + + + +LP +D R L+
Sbjct: 92 SVPDNAAVDESVEMAKKLRNPASAGFVNGLLREFI--RRDKALP-----KSDTEIGR-LS 143
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
YS P W+V +W G+E+ + L+ + ++R N G L M L V
Sbjct: 144 LEYSCPEWLVGKWLAEYGKEKCLSLLESSIGRAPATVRINHLIGSVEETLDM-LAAEGVT 202
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
E S D + + V + +EG VQD ++ L +DPQ G +++D CAAP
Sbjct: 203 FERSSISDYTVHLANA-GAVEKTKAYREGRFHVQDIASQLCCKALDPQAGDTVLDLCAAP 261
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404
GGKT +A + +G V A D++ R++++ A ++ V ++ + + F D
Sbjct: 262 GGKTFTIAEMMGNEGRVLAFDLHPNRVKLIKSGADRLGLSCVTAEVN-NAKVFNDK-LPP 319
Query: 405 CDKVLLDAPCSGLGVLSK 422
D+VL+DAPCSGLGV+ +
Sbjct: 320 ADRVLVDAPCSGLGVIRR 337
>gi|154485073|ref|ZP_02027521.1| hypothetical protein EUBVEN_02796 [Eubacterium ventriosum ATCC
27560]
gi|149734026|gb|EDM50145.1| ribosomal RNA small subunit methyltransferase B [Eubacterium
ventriosum ATCC 27560]
Length = 448
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 161/316 (50%), Gaps = 16/316 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD +T + GT+ R +D +I + + M+P++ +ILR+G Y+I +D
Sbjct: 43 LDKHQRSFITRLFQGTLERRIEIDFIINQFS--KTPVNKMKPVIREILRMGVYQIKYMDN 100
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P AV +E V+LA+ VNG+LR + ++ + PK Q L+
Sbjct: 101 VPVSAVCNEGVKLAEKRKFRNLKGFVNGVLRNIA--RNIEKIEYPK------EQKERLSV 152
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
IYS P W++ +WTK G + +++ + S+R N+ + T ++V L
Sbjct: 153 IYSVPKWIIEKWTKEYGISKTEEMLEGLYKPKATSVRCNTSRA-TVEEIVKSLEYQGTTV 211
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
E S D+ +++ +G + + K G+ VQDES+ +V +P+ I+D CAAPG
Sbjct: 212 EKSKLYDKALKI-SGYDKLENLDVFKAGMITVQDESSMMVGIAANPKEKDYIIDVCAAPG 270
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNET-AKLHQVNSVIRTIHADLRTFADNSTVK 404
GK+L+++ L+G G V A D+ + ++ ++ E A++ N + + +D + K
Sbjct: 271 GKSLHVSELLNGTGTVEARDLTEYKIGLIEENVARVGNENIITKV--SDATVLDKEAIEK 328
Query: 405 CDKVLLDAPCSGLGVL 420
D V+ D PCSGLGV+
Sbjct: 329 ADIVIADLPCSGLGVI 344
>gi|406981882|gb|EKE03270.1| hypothetical protein ACD_20C00225G0014 [uncultured bacterium]
Length = 445
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 151/311 (48%), Gaps = 19/311 (6%)
Query: 115 VTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDE 174
+T++V G ++ + LD I + K + + + LR+ YE+ L P YAV++
Sbjct: 38 LTNLVSGVVKHKLTLDFFIQNIS--AKKLNDLSYQVKNSLRLAVYELEYLHAPDYAVLNS 95
Query: 175 NVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMV 234
V L K +G VN +LR + + + + P + N A + YSHP WM+
Sbjct: 96 YVELVK-QYDKKSGAFVNAVLRNFI--RKRSEIHFPDAKDN---PVYAFSVKYSHPEWMI 149
Query: 235 RRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEF 294
RW G E+ K+ +NN P +R N+ K +++ L+ + + +S D
Sbjct: 150 ERWIHNYGIEDTRKICKYNNLAPKLVIRVNTLK-ISKEKLIDFF----IHNNVSFFDDRI 204
Query: 295 IR---VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYM 351
+ + +V +EG VQ ES+ LV V+DPQ ++D CAAPGGKT ++
Sbjct: 205 VDECMIVHHHNSVKSIPGFEEGFWTVQSESSSLVSIVLDPQENGKVLDLCAAPGGKTTHI 264
Query: 352 ASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411
A+ ++ G + A+DIN RL + V SV + AD + S K D++L+D
Sbjct: 265 AALMNDTGEITAVDINPKRLEKVQNNCLRLGVKSV-KIKAADATKY--QSDKKYDRILID 321
Query: 412 APCSGLGVLSK 422
APCS GVL K
Sbjct: 322 APCSNTGVLIK 332
>gi|110803437|ref|YP_699027.1| sun protein [Clostridium perfringens SM101]
gi|110683938|gb|ABG87308.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens SM101]
Length = 442
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 97/328 (29%), Positives = 165/328 (50%), Gaps = 15/328 (4%)
Query: 96 VERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILR 155
+E F + D+D +D L+T++V GTI++++ +D ++ D ++ ++ ILR
Sbjct: 23 IEINKQFASNDIDPKDKGLITEVVYGTIKYKKMIDIILSNFVAD---IGKIDESVVNILR 79
Query: 156 IGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG 214
Y++ LD +PPYA+V+E V L K P VNG+LR L++ N L
Sbjct: 80 SAIYQMKFLDRVPPYAIVNEAVNLTK-ETEPNLAKFVNGVLRNY--LRNENKNFKVGLRN 136
Query: 215 NDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL 274
N+ AL +S WM+ + K G+++A++++ N+ P ++R N+ K ++
Sbjct: 137 NE-----ALCYDFSFDRWMIEMFIKQYGKDDALRILRGLNTIPYVTVRVNTCKA-DYDEV 190
Query: 275 VMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 334
+L E E I +K G + + L +EGL VQDESA LV + D +
Sbjct: 191 YERLEEEGYDIEEGAFSPEAIIIKKG-SAIEKNKLYQEGLITVQDESAMLVAPLFDLKDD 249
Query: 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 394
+ ++D C+APG K ++ + +G V A DI+ +L ++ E + +V + D
Sbjct: 250 EQVMDLCSAPGTKATHIGELMMNKGKVVAFDIHDHKLTLIKENIDRLGLTNVEVEL-GDA 308
Query: 395 RTFADNSTVKCDKVLLDAPCSGLGVLSK 422
D+VLLD PCSGLG++ K
Sbjct: 309 TKINSKYINWADRVLLDVPCSGLGIIRK 336
>gi|414564619|ref|YP_006043580.1| ribosomal RNA small subunit methyltransferase [Streptococcus equi
subsp. zooepidemicus ATCC 35246]
gi|338847684|gb|AEJ25896.1| ribosomal RNA small subunit methyltransferase [Streptococcus equi
subsp. zooepidemicus ATCC 35246]
Length = 442
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 108/326 (33%), Positives = 170/326 (52%), Gaps = 37/326 (11%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D+D LVT+IV GTI + L+ L H + ++ + +L + Y++ LD
Sbjct: 42 LSDKDKALVTEIVYGTISRKITLE---WYLAHYIEDRDRLDKWVYYLLMLSLYQLAYLDK 98
Query: 166 MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A+V++ V LAK A GA LVN +LR+L + PLP ++ R + + A
Sbjct: 99 VPAHAIVNDAVNLAKARAHGRGADKLVNAVLRQL------TNKPLPDIKSIKR-KNKYYA 151
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
YS PVW+V++ G+E A+ +M SL SR + DL +L+ +K
Sbjct: 152 VAYSVPVWLVKKLIDQFGEERAVAIME--------SLFVRSRASIRVTDLT-KLDEIK-- 200
Query: 285 HELSLHLDEFIRVKTGLQ----NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ ++ + +TGL N + G +QDE++ LV +D Q + I+D
Sbjct: 201 --QATGSEQSLLARTGLTKRAGNFAASSYFINGDITIQDETSQLVAPTLDIQGQEMILDA 258
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT---- 396
C+APGGKT ++AS L+ G V A+D+ + +L ++NE K V I T D R
Sbjct: 259 CSAPGGKTAHIASYLTS-GKVVALDLYEHKLALVNENVKRLGVADRIETKVLDAREVHKH 317
Query: 397 FADNSTVKCDKVLLDAPCSGLGVLSK 422
FA NS DK+L+DAPCSG+G++ +
Sbjct: 318 FAKNS---FDKILVDAPCSGIGLIRR 340
>gi|189426656|ref|YP_001953833.1| sun protein [Geobacter lovleyi SZ]
gi|189422915|gb|ACD97313.1| sun protein [Geobacter lovleyi SZ]
Length = 464
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 91/269 (33%), Positives = 144/269 (53%), Gaps = 15/269 (5%)
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A V V L L P A L+NG+LR + +++ +LP P R A LA
Sbjct: 107 VPSHAAVHATVELTNEIL-PRAKGLINGVLRSYLRRQESLTLPDPA-----RQPAAWLAA 160
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
YS P W+ +W + Q EA L + P +LR N+ + ++R+ L+ + + ++
Sbjct: 161 AYSLPGWLAEQWLQQFSQNEAAGLAAASTEIPPLTLRVNTLR-ISRSALLERFHAAELAA 219
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGL--LKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
E E I++ LQ GL EGL VQDE++ LV ++ PQ G+ I+D CAA
Sbjct: 220 EPCRFAPEGIQL---LQRCQITGLPGFDEGLFMVQDEASQLVAHLLAPQTGEQILDMCAA 276
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403
PGGK ++A ++ +G + A D+N R+R + E+A+ + S I+ + AD T +
Sbjct: 277 PGGKATHLAQLMNDRGCITATDLNARRIRRICESAQRLGLTS-IQAVAADALTSDYLEGL 335
Query: 404 KCDKVLLDAPCSGLGVLSKTCVGIGDWRI 432
+ D++LLDAPCSGLGV+ + WR+
Sbjct: 336 QFDRILLDAPCSGLGVIRRNPE--AKWRL 362
>gi|195978660|ref|YP_002123904.1| 16S rRNA m(5)C 967 methyltransferase RsmB [Streptococcus equi
subsp. zooepidemicus MGCS10565]
gi|195975365|gb|ACG62891.1| 16S rRNA m(5)C 967 methyltransferase RsmB [Streptococcus equi
subsp. zooepidemicus MGCS10565]
Length = 442
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 107/328 (32%), Positives = 170/328 (51%), Gaps = 37/328 (11%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ L D+D LVT+IV GTI + L+ + D ++ + +L + Y++ L
Sbjct: 40 QSLSDKDKALVTEIVYGTISRKITLEWYLAHYIEDR---DRLDKWVYYLLMLSLYQLAYL 96
Query: 165 D-MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
D +P +A+V++ V LAK A GA LVN +LR+L + PLP ++ R + +
Sbjct: 97 DKVPAHAIVNDAVNLAKARAHGRGADKLVNAVLRQLT------NKPLPDIKSIKR-KNKY 149
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
A YS PVW+V++ G+E A+ +M SL SR + DL +L+ +K
Sbjct: 150 YAVAYSVPVWLVKKLIDQFGEERAVAIME--------SLFVRSRASIRVTDLT-KLDEIK 200
Query: 283 VPHELSLHLDEFIRVKTGLQ----NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 338
+ ++ + +TGL N + G +QDE++ LV +D Q + I+
Sbjct: 201 ----QATGSEQSLLARTGLTKRAGNFAASSYFINGDITIQDETSQLVAPTLDIQGQEMIL 256
Query: 339 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT-- 396
D C+APGGKT ++AS L+ G V A+D+ + +L ++NE AK V T D R
Sbjct: 257 DACSAPGGKTAHIASYLTS-GKVVALDLYEHKLALVNENAKRLGVADRTETKVLDAREVH 315
Query: 397 --FADNSTVKCDKVLLDAPCSGLGVLSK 422
FA NS DK+L+DAPCSG+G++ +
Sbjct: 316 KHFAKNS---FDKILVDAPCSGIGLIRR 340
>gi|254526482|ref|ZP_05138534.1| ribosomal RNA small subunit methyltransferase B [Prochlorococcus
marinus str. MIT 9202]
gi|221537906|gb|EEE40359.1| ribosomal RNA small subunit methyltransferase B [Prochlorococcus
marinus str. MIT 9202]
Length = 438
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 103/348 (29%), Positives = 166/348 (47%), Gaps = 29/348 (8%)
Query: 87 GSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEK-TFSS 145
SGD +E+ L + + D+ +T++ G IR+R++LD H K T
Sbjct: 19 SSGDFSDHALEKVL--KNYQFNPLDIAFITELSFGCIRYRKFLD---LWTDHTSKITHKK 73
Query: 146 MEPLLLQILRIGFYEIVKLDMPPY-AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDN 204
P L +L IG Y+++K+D P+ A + V +AK G VN ILR +
Sbjct: 74 QPPKLRWLLHIGLYQLLKMDKIPFSAAISTTVEVAKKTDLNGLAGTVNAILRNASRKLEQ 133
Query: 205 NSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN 264
P + +R ++ + S P+W+V+ K++G E ++ N PS LR N
Sbjct: 134 KIFPELSSDRKER-----ISYLESFPLWLVKDLYKWVGNSEGENIIKAFNKKPSIDLRIN 188
Query: 265 SRKGVTRADLVMQLNLLKVPH------ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQ 318
K T D N LKV H E+ L I +K+ +++ +GL +Q
Sbjct: 189 QLK--TNLD-----NFLKVLHKNNIDAEIIKDLHNGITLKSNPRSIKNLPGYSDGLWTIQ 241
Query: 319 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN--- 375
D S+ + +++P+ G+ I+D CAAPG K+ ++A + + A+D + RL+IL
Sbjct: 242 DRSSQWIAPLLNPKEGEKILDACAAPGSKSTHLAELTNDSAEILAVDRSAKRLKILQSNL 301
Query: 376 ETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKT 423
E L VN+ ++T L N DK+L+DAPCSG+G LS+
Sbjct: 302 ERLNLKSVNT-LKTDATSLIELNPNFISYFDKILIDAPCSGIGTLSRN 348
>gi|304316972|ref|YP_003852117.1| sun protein [Thermoanaerobacterium thermosaccharolyticum DSM 571]
gi|302778474|gb|ADL69033.1| sun protein [Thermoanaerobacterium thermosaccharolyticum DSM 571]
Length = 447
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 86/317 (27%), Positives = 167/317 (52%), Gaps = 12/317 (3%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
++D + + +IV GTI + LD +I C K ++ +L IL +G ++++ +D
Sbjct: 34 IEDVEKSFIKEIVFGTIERKYTLDRIIDY-CS-TKDIKKIDNKVLIILEMGLFQLMYMDK 91
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P YA ++E+V L K + A VN +LR + NS+ + L+ N+ L+
Sbjct: 92 VPDYAAINESVNLTKEHVGKYASKFVNAVLRSYL----RNSMKIKFLQPNENL-IEYLSF 146
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
YS P W+V+R ++ ++ N P S+R N+ K + + +LN + +
Sbjct: 147 KYSFPEWIVKRLLNNYDRDATESILESLNGKPEISIRLNTLK-IDGKNFEKKLNDRGLKY 205
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ ++ ++ + L+N+ + K+GL VQDE A ++ V+ P+PG ++D C+APG
Sbjct: 206 KKGMYNNDAYYI--DLKNITNDEIYKDGLIQVQDEGAMIISKVLSPKPGDMVIDVCSAPG 263
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405
GKT +++ ++ +G + A D+ + ++ ++ + V++V + + ++ K
Sbjct: 264 GKTTHLSQLMNNKGKIVAFDVYEHKIDLIKRNCRRLGVDNVDAFVFDSTKVNSE-YIDKA 322
Query: 406 DKVLLDAPCSGLGVLSK 422
DKVL D PCSG+G++ K
Sbjct: 323 DKVLADVPCSGIGIIRK 339
>gi|380032453|ref|YP_004889444.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus plantarum
WCFS1]
gi|342241696|emb|CCC78930.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus plantarum
WCFS1]
Length = 447
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 97/325 (29%), Positives = 165/325 (50%), Gaps = 27/325 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDH-LICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+D RD+ L+T++V G I+ R L++ L + H + ++P + ++L Y+ LD
Sbjct: 38 MDRRDINLLTNMVYGVIQHRLTLEYWLTPFVRHPHQ----IDPWVRELLLSALYQWQYLD 93
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P AV +E + +AKV PG V G+L ++ + LP + R L+
Sbjct: 94 KIPQRAVFNETIEIAKVKGHPGIRRFVTGVLHQM------DRSGLPSFDAIKNPDER-LS 146
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN----SRKGVTRADLVMQLNL 280
YS P+W+++ + LG E+ +++ N +LR N + + VT A ++ L
Sbjct: 147 VTYSMPIWLIQELRRQLGAEKMERILSSLNQPAKQALRVNPALSTVEDVTTA--LINDGL 204
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
P E+S + T Q I ++ G+ VQDESA LVV ++PQP ++D
Sbjct: 205 TITPSEIS----PLGLIATDGQ-AINTEAMRYGMFTVQDESAQLVVPALNPQPNDRVLDA 259
Query: 341 CAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398
CAAPGGKT +A+ L + G V A+DI+ +++++ + A V + D R
Sbjct: 260 CAAPGGKTTQIAASLDAEQGGTVVALDIHANKVKLIGQNAARMHVADRVEATELDARKVE 319
Query: 399 DNSTVKC-DKVLLDAPCSGLGVLSK 422
+ D++L+DAPCSGLG++ +
Sbjct: 320 TQFNAESFDRILVDAPCSGLGLMRR 344
>gi|229174531|ref|ZP_04302063.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MM3]
gi|228609091|gb|EEK66381.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MM3]
Length = 402
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/311 (30%), Positives = 162/311 (52%), Gaps = 18/311 (5%)
Query: 114 LVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVV 172
++T+IV GTI+ R LD+ + +E + +LR+ Y+++ LD +P A +
Sbjct: 1 MLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDRVPERAAI 55
Query: 173 DENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVW 232
E V +AK G +VNG+LR + +P E D + A+AT SHP+W
Sbjct: 56 HEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPIERLAIAT--SHPMW 108
Query: 233 MVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLD 292
+V+ W G E A K+ N P + R N K +T + + L + + +
Sbjct: 109 LVQDWASEYGLETAEKMCEVNMLPPVPTARVNVDK-ITVEEAIELLAGEGIEAKRGDLSE 167
Query: 293 EFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMA 352
+ I+++ G NV K+G ++QDES+ LV ++P G ++D CAAPGGKT ++A
Sbjct: 168 DAIQIERG--NVAHTDAFKKGFLSIQDESSMLVARALEPNEGDEVLDSCAAPGGKTTHIA 225
Query: 353 SCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLD 411
L G G V ++D++ ++R++ + A+ + +V T D R ++ + DK+L+D
Sbjct: 226 ERLKGTGQVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFANETFDKILVD 284
Query: 412 APCSGLGVLSK 422
APCSG GV+ +
Sbjct: 285 APCSGFGVIRR 295
>gi|296121363|ref|YP_003629141.1| sun protein [Planctomyces limnophilus DSM 3776]
gi|296013703|gb|ADG66942.1| sun protein [Planctomyces limnophilus DSM 3776]
Length = 471
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 119/364 (32%), Positives = 169/364 (46%), Gaps = 48/364 (13%)
Query: 88 SGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
+G+ +G V RT L D RL +++ G +R + L L+ L H + ++E
Sbjct: 33 AGNKHIGEVFDQAVDRTT-LSPSDRRLAYELICGIVRRQSTLQALLMSLVH--RQMETLE 89
Query: 148 PLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVA-LRPGAGNLVNGILRKLVLLKDNN 205
L I++IG Y+I +P +A V E V LAK A LR G VNG+LR + L N
Sbjct: 90 RPLQTIIKIGLYQIFLCQGIPQHAAVHETVELAKRANLR--WGGFVNGVLRSAIQLMTEN 147
Query: 206 SLPLP--KLEGNDRAQARALAT----------------IYSHPVWMVRRWTKYLGQEEAI 247
L P K Q R L T +S P +V RW G E I
Sbjct: 148 ILTAPSSKALPIGHHQYRELTTDLFPSPTLTPGSYIAAAFSFPHDLVERWVGQYGVEATI 207
Query: 248 KLMVWNNSDPSFSLRAN--------SRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKT 299
++ W N +LR N R+ + AD V + L E IR+ +
Sbjct: 208 RMAFWFNQVTETALRVNLLKTDRETFRQKLFAADFVAEAG----------DLPETIRLLS 257
Query: 300 GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQG 359
++ G EG +VQD SA ++PQPG+ ++D CAAPG KT +MA + QG
Sbjct: 258 TVRISTLPGF-PEGEFSVQDLSAQHAARRLNPQPGEVVLDLCAAPGSKTCHMAELMQNQG 316
Query: 360 LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSGLG 418
+ A D + GR+R + E A+ + S+IRTI R +N +++ DKVL D PCS G
Sbjct: 317 EIIAADTHGGRIRQVYENAERLGL-SIIRTITIGPR--GENLPSMEFDKVLADVPCSNTG 373
Query: 419 VLSK 422
VL K
Sbjct: 374 VLGK 377
>gi|300767253|ref|ZP_07077165.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
plantarum subsp. plantarum ATCC 14917]
gi|308180467|ref|YP_003924595.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
plantarum subsp. plantarum ST-III]
gi|418275217|ref|ZP_12890540.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus plantarum
subsp. plantarum NC8]
gi|300495072|gb|EFK30228.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
plantarum subsp. plantarum ATCC 14917]
gi|308045958|gb|ADN98501.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
plantarum subsp. plantarum ST-III]
gi|376008768|gb|EHS82097.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus plantarum
subsp. plantarum NC8]
Length = 447
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/325 (29%), Positives = 165/325 (50%), Gaps = 27/325 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDH-LICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+D RD+ L+T++V G I+ R L++ L + H + ++P + ++L Y+ LD
Sbjct: 38 MDRRDINLLTNMVYGVIQHRLTLEYWLTPFVRHPHQ----IDPWVRELLLSALYQWQYLD 93
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P AV +E + +AKV PG V G+L ++ + LP + R L+
Sbjct: 94 KIPQRAVFNETIEIAKVKGHPGIRRFVTGVLHQM------DRSGLPSFDAIKDPDER-LS 146
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN----SRKGVTRADLVMQLNL 280
YS P+W+++ + LG E+ +++ N +LR N + + VT A ++ L
Sbjct: 147 VTYSMPIWLIQELRRQLGAEKMERILSSLNQPAKQALRVNPALSTVEDVTTA--LINDGL 204
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
P E+S + T Q I ++ G+ VQDESA LVV ++PQP ++D
Sbjct: 205 TITPSEIS----PLGLIATDGQ-AINTEAMRYGMFTVQDESAQLVVPALNPQPNDRVLDA 259
Query: 341 CAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398
CAAPGGKT +A+ L + G V A+DI+ +++++ + A V + D R
Sbjct: 260 CAAPGGKTTQIAASLDAEQGGTVVALDIHANKVKLIGQNAARMHVADRVEATELDARKVE 319
Query: 399 DNSTVKC-DKVLLDAPCSGLGVLSK 422
+ D++L+DAPCSGLG++ +
Sbjct: 320 TQFNAESFDRILVDAPCSGLGLMRR 344
>gi|354565440|ref|ZP_08984615.1| sun protein [Fischerella sp. JSC-11]
gi|353549399|gb|EHC18841.1| sun protein [Fischerella sp. JSC-11]
Length = 491
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 120/399 (30%), Positives = 185/399 (46%), Gaps = 53/399 (13%)
Query: 54 NLEVSPHRAVSAVRLMRIQFGGAFADLLNKK--GKGS-GDNEMGYVERTLGFRTKDLDDR 110
N +SP R ++ + L + GA+AD+ + K D+E+G K + DR
Sbjct: 8 NQNISP-RQLAFIALREVH-KGAYADVALDRVLAKADIADSEVG---------AKMVSDR 56
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQ-ILRIGFYEIVKLD-MPP 168
RLVT++V G R +R LD ++ L K S +P L+ IL +G Y+++ + +PP
Sbjct: 57 --RLVTELVYGCTRRQRTLDAIVDQLA---KKKSHQQPKDLRTILHLGLYQLLYQERIPP 111
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKL--VLLKDNNSLPLPKLEGNDRAQARA---- 222
A V+ V+LAK G VNG+LR+ V+ ++ D + +
Sbjct: 112 SAAVNTTVQLAKENGFAGLAGFVNGLLRQFLRVMEEEVGRTGGGVTGNTDEIFSASPSLS 171
Query: 223 ---------------LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK 267
L ++S P W+++ W G E KL +W N P+ LR N
Sbjct: 172 FLTSFLQLPENPVERLGILHSFPDWIIQVWIDQFGVMETEKLCIWMNQTPAIDLRVNP-- 229
Query: 268 GVTRADLVMQLNLLKVP----HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAG 323
RADL L+ LS HL + +R+ + + +G ++QD SA
Sbjct: 230 --LRADLETVEAALQAAGISCQRLS-HLPQALRLLSHPGQIQNLPGFNQGWWSIQDSSAQ 286
Query: 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV 383
LV +DPQ + ++D CAAPGGKT ++A + G ++A D R+R L E + +
Sbjct: 287 LVGHFLDPQIKEVVIDSCAAPGGKTTHIAELMQDTGKIWACDRTASRMRKLQENMQRLHL 346
Query: 384 NSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
S+ I D R + D+VLLDAPCSGLG L +
Sbjct: 347 KSIEICI-GDSRNLSQFRN-SADRVLLDAPCSGLGTLHR 383
>gi|217964025|ref|YP_002349703.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes HCC23]
gi|386008594|ref|YP_005926872.1| tRNA and rRNA cytosine-C5-methylase [Listeria monocytogenes L99]
gi|386027202|ref|YP_005947978.1| putative rRNA cytosine-C5-methylase (Sun protein) [Listeria
monocytogenes M7]
gi|217333295|gb|ACK39089.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes HCC23]
gi|307571404|emb|CAR84583.1| tRNA and rRNA cytosine-C5-methylase, putative [Listeria
monocytogenes L99]
gi|336023783|gb|AEH92920.1| putative rRNA cytosine-C5-methylase (Sun protein) [Listeria
monocytogenes M7]
Length = 444
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 102/361 (28%), Positives = 186/361 (51%), Gaps = 34/361 (9%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGF 158
+ + L+ D L+T++V GT + + LD+ + F + EP + +LR+
Sbjct: 32 ALKKQKLNPLDKGLLTELVYGTTQRKITLDYYLA-------PFLNKEPDNWVKNLLRMSV 84
Query: 159 YEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG-ND 216
Y++ LD +P +A+++E +AK G VNG+LR ++ +P ++ D
Sbjct: 85 YQLTFLDKVPEHAILNEAGDIAKDLGHQGVTKFVNGVLRNVI------RKGVPSIDAIKD 138
Query: 217 RAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM 276
Q A+ T S P W+ +RW G ++ ++ + P S+R N + + L+
Sbjct: 139 PVQKIAVET--SLPEWLAKRWADQYGIKKLREIGLAFLVAPHQSIRVNQTE-IPTEQLIK 195
Query: 277 QLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 336
+LN + + ++E + V+ G +V + K+G C++QDES+ L + + +
Sbjct: 196 ELNDQGITVTRNEFIEEALLVEKG--SVAETKAYKDGKCSIQDESSMLAAYALQLEDNLT 253
Query: 337 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396
++D CAAPGGKT ++A + G G+V+A+DI++ + +++++ AK Q+ + IRT H D RT
Sbjct: 254 VLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQAAKRLQLLN-IRTAHLDART 312
Query: 397 FADNSTVKC-DKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLL 455
+ + D++L+DAPCSG GVL R ++Y KT + L E + +
Sbjct: 313 ASTMFEPETFDRILVDAPCSGFGVL----------RRKPDIKYAKTEKDIHKLAEIQLAI 362
Query: 456 L 456
L
Sbjct: 363 L 363
>gi|160947101|ref|ZP_02094268.1| hypothetical protein PEPMIC_01033 [Parvimonas micra ATCC 33270]
gi|158446235|gb|EDP23230.1| ribosomal RNA small subunit methyltransferase B [Parvimonas micra
ATCC 33270]
Length = 434
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 164/322 (50%), Gaps = 16/322 (4%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
TK++ D D + + +IV GT+ R YLD++I LC + P +L ILRI Y+I+
Sbjct: 27 TKNISDLDSKFLREIVYGTLENRIYLDYIIKKLC--KLRIKKFNPYILNILRISIYQIIF 84
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
+D +P +A+++E V L KV + VNG LR L++ K+E ++ A
Sbjct: 85 MDKIPEFAIINEAVNLTKVFKLKKFSSFVNGSLRNF--LRNKEDFMKIKVE----SEEEA 138
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL-- 280
++ YS + +V+ G+EE IK++ + + P F++R +S + T +V L
Sbjct: 139 ISIKYSANMDIVKLLLGDYGREETIKILENSMTKPHFAIRISSFEK-TEEKVVKDLEKDG 197
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
K+ L F+ T N+++ K G VQD + L ++ P+ ++D
Sbjct: 198 YKLKKSEISKLTYFVENPT---NILETESFKSGDFTVQDVGSILTGEILAPKENSKVLDI 254
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
C+APGGKT ++A + G ++A DI K +L+ + E K V +V + ++ D + +
Sbjct: 255 CSAPGGKTCHLAFQMKNSGEIFANDIVKSKLKKIEENCKRLNVQNV-KLLNFDASIYKEE 313
Query: 401 STVKCDKVLLDAPCSGLGVLSK 422
+ +L D CSG+GV+ +
Sbjct: 314 YKEQFGYILCDVICSGIGVMDR 335
>gi|75762655|ref|ZP_00742497.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|74489854|gb|EAO53228.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus thuringiensis
serovar israelensis ATCC 35646]
Length = 368
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/272 (32%), Positives = 145/272 (53%), Gaps = 13/272 (4%)
Query: 153 ILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPK 211
+LR+ Y+++ LD +P A + E V +AK G +VNG+LR + +P
Sbjct: 1 MLRLSLYQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI------QREGVPS 54
Query: 212 LEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR 271
++ R LA SHPVW+V+ WT G E A K+ N P + R N K VT
Sbjct: 55 VDEIKDPVER-LAIAMSHPVWLVQEWTSAYGLETAEKMCEVNMLPPVPTARVNVDK-VTV 112
Query: 272 ADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
+ + L + + D+ I+++ G NV K+G ++QDES+ LV ++P
Sbjct: 113 EEAIELLASEGIEAKRGDLSDDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEP 170
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
G++++D CAAPGGKT ++A L G G V ++D++ ++R++ + A+ + +V T
Sbjct: 171 NEGETVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-ETKA 229
Query: 392 ADLRTFADN-STVKCDKVLLDAPCSGLGVLSK 422
D R ++ S DK+L+DAPCSG GV+ +
Sbjct: 230 LDARKVQEHFSNETFDKILVDAPCSGFGVIRR 261
>gi|381209846|ref|ZP_09916917.1| hypothetical protein LGrbi_07971 [Lentibacillus sp. Grbi]
Length = 448
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/338 (28%), Positives = 172/338 (50%), Gaps = 29/338 (8%)
Query: 96 VERTLGF---------RTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSM 146
+ER GF +++ + +D L+T+IV GTI+ + LD+ + +K +
Sbjct: 17 IERDSGFSHLLIDHEIKSRSIPSKDEALMTEIVYGTIQRKLTLDYYLDAFVDTKK---KI 73
Query: 147 EPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKD 203
+P + +LR+ Y++ LD +P +A++ E V +AK G + VNG+LR + D
Sbjct: 74 KPWVRMLLRMSVYQMHFLDRVPDHAIIHEAVEIAKHRGHKGIASFVNGVLRSMQRKGAPD 133
Query: 204 NNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRA 263
+++ ++A+ LA SHP W+V+RW G + + N + S+R
Sbjct: 134 TDAI---------ESKAKQLAIETSHPEWLVKRWIDMYGYDMTRDMCDANLARKPLSVRV 184
Query: 264 NSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAG 323
K ++R + +L+ L S + I V G N+++ L +EG +QD+S+
Sbjct: 185 QPLK-ISRRQAMDELHELGFETRPSDFSGQGIIVDQG--NILRTRLFEEGYVTIQDQSSM 241
Query: 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV 383
LV +++ +PG S++D C+APGGK + A + +G + A D++ + +N A +
Sbjct: 242 LVTEMLNAEPGMSVLDACSAPGGKVTHTAEKMQNKGSICAYDLHAKKAEQINHKAAELDL 301
Query: 384 NSVIRTIHADLRTFAD-NSTVKCDKVLLDAPCSGLGVL 420
++I D R + + D++L+DAPCSGLGV+
Sbjct: 302 -TIIDANAGDARKLLEKHEKGSFDRILIDAPCSGLGVI 338
>gi|21673438|ref|NP_661503.1| Sun protein [Chlorobium tepidum TLS]
gi|21646540|gb|AAM71845.1| sun protein [Chlorobium tepidum TLS]
Length = 428
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 100/329 (30%), Positives = 158/329 (48%), Gaps = 38/329 (11%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLIC-LLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
L D L ++V GT+++R D +I HD ++ +L ILR+G Y++++LD
Sbjct: 33 LGKNDRALAKELVAGTLKYRLQCDFIIARFYRHD---YAKAATVLKHILRLGVYQLLRLD 89
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILR---KLVLLKDNNSLPLPKLEGNDRAQAR 221
+P A V+E+V+LA+ LVNG+LR K + D + +P +++
Sbjct: 90 RVPKSAAVNESVKLARKFKGDHLARLVNGLLRNISKATIDLDAWTAEMP--------ESK 141
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
L+ +YS P W+ RW G + + ++ N P+ R N K LL
Sbjct: 142 RLSILYSFPEWLAARWLMRYGPDATLAMLAHGNLPPATGYRINRLKANPE-------TLL 194
Query: 282 KVPHELSLH--------LDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQP 333
P ELS LD F K Q + LLKEGL +VQ+ + G + P+P
Sbjct: 195 ARP-ELSDAKRVADADGLDRFFFSK---QFALLEPLLKEGLVSVQNPAQGQACLMAAPEP 250
Query: 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD 393
G ++ D CAAPGGK+ +MA + +G + A+D ++ + A + ++I D
Sbjct: 251 GSTVFDMCAAPGGKSTFMAELMENRGRIIALDRTPAKVARIASNASALGI-TIIEPREGD 309
Query: 394 LRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
TF + D +LLDAPC+G GVL +
Sbjct: 310 ALTF--DPGCAMDTILLDAPCTGTGVLGR 336
>gi|443315650|ref|ZP_21045130.1| ribosomal RNA small subunit methyltransferase RsmB [Leptolyngbya
sp. PCC 6406]
gi|442784744|gb|ELR94604.1| ribosomal RNA small subunit methyltransferase RsmB [Leptolyngbya
sp. PCC 6406]
Length = 454
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 179/377 (47%), Gaps = 49/377 (12%)
Query: 58 SPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTD 117
SP R ++ L I + G FAD++ + +++RT + D T+
Sbjct: 11 SPARRLAFAALKEI-YQGGFADVVLHR----------HLQRTT------ISGPDRPFATE 53
Query: 118 IVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQI-LRIGFYEIVKLD-MPPYAVVDEN 175
+V G +R +R LD LI L + + +PL L+I L +G Y++ L +PP A V+ +
Sbjct: 54 LVYGIVRRQRTLDALIDQLGTKK---AQQQPLELRIVLHLGLYQLRYLSHVPPSAAVNTS 110
Query: 176 VRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVR 235
V L K P +VNGILR+ + L+ + PL L D A L +S P W+V
Sbjct: 111 VDLVKAIGLPRLSGVVNGILRQYLRLQGEGTDPL--LLPTDAIAA--LGIRHSFPDWLVA 166
Query: 236 RWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKG----VTRADLVMQLNLLKVPHELSLHL 291
W + +G E L W N P+ LR +S + V A + ++P
Sbjct: 167 LWLEAIGPEATDALCDWLNQSPTIDLRVHSLRATVDTVEAAFTTAGIATTRLPG------ 220
Query: 292 DEFIRVKTGLQNVIQAGLLKE------GLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ L+ V +G ++E G VQD SA V +VDPQP Q ++D CAAPG
Sbjct: 221 -----LPWALRLVGHSGSIREMPGYDNGWWTVQDASAQWVSYLVDPQPDQVVIDACAAPG 275
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405
GK ++A+ + G ++A D RL+ + +T + S I T+ D T +
Sbjct: 276 GKAAHLAALMEDTGTIWACDRTPSRLKKIQQTCDRLGLKS-IHTLVGDSTTLTRFEG-QG 333
Query: 406 DKVLLDAPCSGLGVLSK 422
D+V++DAPCSGLG L +
Sbjct: 334 DRVIVDAPCSGLGTLHR 350
>gi|346315319|ref|ZP_08856834.1| ribosomal RNA small subunit methyltransferase B
[Erysipelotrichaceae bacterium 2_2_44A]
gi|345904847|gb|EGX74590.1| ribosomal RNA small subunit methyltransferase B
[Erysipelotrichaceae bacterium 2_2_44A]
Length = 415
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 105/339 (30%), Positives = 167/339 (49%), Gaps = 42/339 (12%)
Query: 94 GYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPL--LL 151
GY L + + +D +D LVT IV GT++ R L+ + +++ EP +
Sbjct: 19 GYSNLLLRNKLQSVDPKDKALVTQIVYGTLQNYR-------LVRYQWQSYVKKEPCKEVA 71
Query: 152 QILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLP 210
+L + Y+++ +D MP YAV+DE VR+ K + P LVN +LR++ + N
Sbjct: 72 LLLDMSVYQLLYMDKMPAYAVIDEAVRITKKNIHPRFSALVNAVLRQV----ERNGKR-- 125
Query: 211 KLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVT 270
+LEGN Q LA SHP W+V W G +E K+ +SD RK
Sbjct: 126 ELEGNAIEQ---LALETSHPTWLVAMWKAQYGWQECEKIC---HSDLEI------RKQCV 173
Query: 271 RADLVMQLNLLKVPHELSLHLDEFIR---VKTGL----QNVIQAGLLKEGLCAVQDESAG 323
R +N +K E L EF + + L ++I + K+GL ++QDE +
Sbjct: 174 R------VNTMKASVEELLASGEFAKGSLAEDALYYLGNDIIHSNYYKQGLISIQDEVSQ 227
Query: 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV 383
LV VDPQP + I+D C+APG K ++A + +G + DI+ R+ ++ A+ Q+
Sbjct: 228 LVAQYVDPQPQERILDVCSAPGTKACHIAERMGDKGSIVCGDIHAHRVELIKNGARRLQL 287
Query: 384 NSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
S+ + D + + D+VL D PCSG GVL++
Sbjct: 288 QSIQAQV-MDATSLKEIEGEMFDRVLCDVPCSGYGVLAR 325
>gi|433462308|ref|ZP_20419895.1| Sun protein [Halobacillus sp. BAB-2008]
gi|432188996|gb|ELK46138.1| Sun protein [Halobacillus sp. BAB-2008]
Length = 448
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 101/348 (29%), Positives = 180/348 (51%), Gaps = 27/348 (7%)
Query: 79 DLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH 138
DLL + G G +V +D +D L+T+IV GT++ R + + I
Sbjct: 12 DLLTRIGDQGG---FSHVLLDREINKQDFSRQDGGLLTEIVYGTLQRRDLIAYTIQPYIQ 68
Query: 139 DEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRK 197
+K ++P + +L + Y+++ L+ +P +A++ E V ++K G + +NG+LR
Sbjct: 69 KQK---KIKPWVRWLLYMSVYQMMFLERVPDHAIIHEAVEISKKRGHKGIASFMNGVLRN 125
Query: 198 LVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDP 257
+ + N L ++ D + A+ T SHP+W+V+RW + G+E + NN
Sbjct: 126 V---QRNGGRDLDEI--TDPVEKLAIRT--SHPLWLVKRWAEQYGEEVTEAMCEANNRHL 178
Query: 258 SFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGL----QNVIQAGLLKEG 313
S+R + + R ++V +L E L ++E GL +++ L EG
Sbjct: 179 PMSIRIQPLR-MDREEVVSRLE------EDGLTVEESQLSPQGLIVTGGAILKHPLFAEG 231
Query: 314 LCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRI 373
VQD+S+ LV ++D G +++D C+APGGKT ++A ++ +G + A D+++ + ++
Sbjct: 232 YVTVQDQSSMLVAEMMDLASGMTVLDACSAPGGKTTHIAEKMADEGEILAYDLHEKKAKL 291
Query: 374 LNETAKLHQVNSVIRTIHADLRTFADNSTVK-CDKVLLDAPCSGLGVL 420
+ + AK Q+ S I AD R + + D++LLDAPCSGLGVL
Sbjct: 292 VEKKAKQLQLTS-ITAGQADSRKLGEKHAAEHFDRILLDAPCSGLGVL 338
>gi|78778810|ref|YP_396922.1| sun protein [Prochlorococcus marinus str. MIT 9312]
gi|78712309|gb|ABB49486.1| sun protein [Prochlorococcus marinus str. MIT 9312]
Length = 438
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 102/346 (29%), Positives = 167/346 (48%), Gaps = 29/346 (8%)
Query: 89 GDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEK-TFSSME 147
GD +E+ L R + D+ +T++ G IR+R++LD H K T
Sbjct: 21 GDFSDHALEKVL--RNYQFNPLDIAFITELSFGCIRYRKFLD---LWTDHTSKITHKKQP 75
Query: 148 PLLLQILRIGFYEIVKLDMPPY-AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
P L +L IG Y+++K+D P+ A + V +AK G VN ILR +
Sbjct: 76 PKLRWLLHIGLYQLLKMDKIPFPAAISTTVEVAKKTDLNGLAGTVNAILRNASRKLEQKI 135
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
LP + +R ++ + S P+W+++ K++G E ++ N PS LR N
Sbjct: 136 LPELSSDRKER-----ISYLESFPLWLLKDLYKWVGNSEGENIIKAFNKKPSIDLRINQL 190
Query: 267 KGVTRADLVMQLNLLKVPHELSLH------LDEFIRVKTGLQNVIQAGLLKEGLCAVQDE 320
K T D N LKV HE ++ L I +K+ +++ +GL +QD
Sbjct: 191 K--TNLD-----NFLKVLHENNIDAEIIKDLHNGITLKSNPRSIKNLPGYSDGLWTIQDR 243
Query: 321 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKL 380
S+ + +++P+ G+ I+D CAAPG K+ ++A + + A+D + RL+IL +
Sbjct: 244 SSQWIAPLLNPKEGEKILDACAAPGSKSTHLAELTNDSAEIIAVDRSAKRLKILQSNLER 303
Query: 381 HQVNSVIRTIHADLRTFAD---NSTVKCDKVLLDAPCSGLGVLSKT 423
+ SV T+ AD + + DK+LLDAPCSG+G LS+
Sbjct: 304 LNLKSV-NTLKADATSLIELNPKFISYFDKILLDAPCSGIGTLSRN 348
>gi|240103511|ref|YP_002959820.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus
gammatolerans EJ3]
gi|239911065|gb|ACS33956.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus
gammatolerans EJ3]
Length = 451
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/303 (30%), Positives = 154/303 (50%), Gaps = 26/303 (8%)
Query: 124 RWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVAL 183
+WR +D +I + K ++P L +LRIG +EI +PP D +R+ K
Sbjct: 59 KWRAKIDFIINSVLKGSKV-EDLDPYLANLLRIGTFEIHFRKVPPAIATDSIIRVVKERF 117
Query: 184 RPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQ 243
VN ++ + K + L +L+ DR + L+ +SHP W V + LG
Sbjct: 118 DFSRAKFVNALMHSIE--KFDVERALKRLKERDRIEW--LSVRFSHPRWYVEYVIELLGY 173
Query: 244 EEAIKLMVWNNSDPSFSLRANSRKGVTRADLV--------MQLNLLKVPHELSLHLDEFI 295
+EA++L++ NN + +RAN+ K T D + ++ L VP L + +
Sbjct: 174 DEAVRLLLSNNRPQRYYVRANTLK--TDMDSLRDYLEENGVRTALTPVPDVLKV-----L 226
Query: 296 RVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL 355
KT V + KEG +QD ++ V V++P+PG+ ++D AAPG KT + AS +
Sbjct: 227 DYKTP---VTRLDWYKEGKFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAASLM 283
Query: 356 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCS 415
+G + A+D + RL + E K+ + +V + +HAD ++F D + K D+++LDAPCS
Sbjct: 284 ENKGEIVAVDYSYDRLMRMKEKMKILGIKNV-KLVHADGQSFRDKA--KFDRIILDAPCS 340
Query: 416 GLG 418
G
Sbjct: 341 SSG 343
>gi|442318431|ref|YP_007358452.1| ribosomal RNA small subunit methyltransferase B [Myxococcus
stipitatus DSM 14675]
gi|441486073|gb|AGC42768.1| ribosomal RNA small subunit methyltransferase B [Myxococcus
stipitatus DSM 14675]
Length = 438
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 106/316 (33%), Positives = 154/316 (48%), Gaps = 17/316 (5%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMP 167
D RD L T++ GT R + LD+ I ++ +ME +L LRIG Y+I +P
Sbjct: 36 DPRDAGLATELTYGTTRRQLALDYAISRFA--DRKLDAMEDRVLAALRIGAYQIFHTRVP 93
Query: 168 PYAVVDENVR-LAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI 226
A V E V+ L V L AG N ILRKL LP P L A L+
Sbjct: 94 ARAAVAETVQALKDVGLARAAG-FTNAILRKLA------ELPAPPLPSQTDV-AHYLSVR 145
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHE 286
SHP W+V RW + G+E A ++V +N P +RAN+ K VTR L+ QL L V +
Sbjct: 146 ESHPQWLVERWLRQFGRERAEAMLVADNQSPPVVIRANTAK-VTRDALLRQLQELGVEAK 204
Query: 287 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 346
+ L + + V EGL VQDE+A LV ++D CAAPGG
Sbjct: 205 AAT-LSPVGIILPPVGRVEDVYGYSEGLWQVQDEAAQLVGVYGAIPESARVLDACAAPGG 263
Query: 347 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 406
K+ ++A + V A+D++ +LR ++ A+ ++S ++ D + +
Sbjct: 264 KSCHLAQ----EHDVVAVDVHAHKLRKIDAEARRLGLSSRLKAYAHDAAEPFPEAWGEFH 319
Query: 407 KVLLDAPCSGLGVLSK 422
+L+DAPCSGLG L +
Sbjct: 320 AMLVDAPCSGLGTLRR 335
>gi|318040449|ref|ZP_07972405.1| sun protein [Synechococcus sp. CB0101]
Length = 454
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 112/344 (32%), Positives = 164/344 (47%), Gaps = 15/344 (4%)
Query: 94 GYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQI 153
G +ER LG RT L D L T++ G IR RR LD + L + P L +
Sbjct: 37 GALERELG-RTS-LSPADRGLATELAYGAIRQRRLLDAWLDQL--GKVPAERQPPKLRWL 92
Query: 154 LRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKD-NNSLPLPK 211
L IG Y+++ D +PP A V V LAK + NG+LR + ++ ++LPL
Sbjct: 93 LHIGLYQLLASDRVPPSAAVSTTVELAKRGGLARLAPVANGMLRAFLRRREAGDTLPLTP 152
Query: 212 LEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR 271
+ D A AL S P W+ ++ E A + N+ PS LR N R T
Sbjct: 153 EQAGD--PATALGVRQSLPPWLAAELLGWVPPERAEAFGLACNTPPSLDLRVN-RLRSTP 209
Query: 272 ADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
A++ L V L I ++ ++ + EG VQD +A + ++DP
Sbjct: 210 AEVCAALAAAGVEALPIEGLPAGITLQGRSGDLSRLPGFGEGHWCVQDRAAQRIAPLLDP 269
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
QPG+ I+D CAAPGGK+ ++A + QG+V A+D + RLR ++ A+ + S I H
Sbjct: 270 QPGERILDACAAPGGKSTHLAEWMGDQGMVLALDRGEARLRRVSRNAERLGLRS-IAVQH 328
Query: 392 ADLRTFADNSTV---KCDKVLLDAPCSGLGVLSKTCVGIGDWRI 432
D A D++L+DAPCSGLG L++ WRI
Sbjct: 329 GDATALAQEQPELQGSFDRILVDAPCSGLGTLARHA--DARWRI 370
>gi|410727115|ref|ZP_11365338.1| ribosomal RNA small subunit methyltransferase RsmB [Clostridium sp.
Maddingley MBC34-26]
gi|410599450|gb|EKQ54003.1| ribosomal RNA small subunit methyltransferase RsmB [Clostridium sp.
Maddingley MBC34-26]
Length = 438
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 163/318 (51%), Gaps = 16/318 (5%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
DL+++D L+T+IV G +R ++ LD +I D K M +L ILR+ Y++ LD
Sbjct: 33 DLNEKDKALLTEIVYGVLRRKKTLDIIISNFVKDIKL---MNKDILNILRVAIYQMNFLD 89
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P YA +E V AK + LVNGILR D+ + K++ A
Sbjct: 90 KIPSYAACNEAVEEAK-EISEEDSKLVNGILRNFTKNPDDIEVSGNKID--------EYA 140
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
+S WM+R K G+ + K+M NS P S+R N K D+ +L L+
Sbjct: 141 YKFSFEPWMIRLLIKQYGENLSKKIMSGLNSIPQVSVRVNEIKA-DYDDVFEKLEELEYE 199
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
E + E I +K G +++ L KEG VQDESA ++ +++ + G +++D C+AP
Sbjct: 200 VEEGVICPEAICIKGG-KSIENNPLFKEGKITVQDESAMIIAPLLELEEGMTVLDLCSAP 258
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404
GGKT ++A L G V A D+++ +L ++ E + + +V + R D
Sbjct: 259 GGKTTHIAEILQNTGKVLAYDLHESKLGLIKENCERLGITNVEVNTNDATRLNPD-LIAA 317
Query: 405 CDKVLLDAPCSGLGVLSK 422
D++L+D PCSGLG++ K
Sbjct: 318 SDRILIDVPCSGLGIIRK 335
>gi|123968018|ref|YP_001008876.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. AS9601]
gi|123198128|gb|ABM69769.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. AS9601]
Length = 438
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 103/348 (29%), Positives = 166/348 (47%), Gaps = 29/348 (8%)
Query: 87 GSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEK-TFSS 145
SGD +E+ L + + D+ +T++ G IR+R++LD H K T
Sbjct: 19 SSGDFSDHALEKVL--KNYQFNPLDIAFITELSFGCIRYRKFLD---LWTDHTSKITHKK 73
Query: 146 MEPLLLQILRIGFYEIVKLDMPPY-AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDN 204
P L +L IG Y+++K+D P+ A + V +AK G VN ILR +
Sbjct: 74 QPPKLRWLLHIGLYQLLKMDKIPFPAAITTTVEVAKKTDLNGLAGTVNAILRNASRKLEQ 133
Query: 205 NSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN 264
P + +R ++ + S P+W+V+ K++G E ++ N PS LR N
Sbjct: 134 KIFPELSSDRKER-----ISYLESFPLWLVKDLYKWVGNSEGENIIRAFNKKPSIDLRIN 188
Query: 265 SRKGVTRADLVMQLNLLKVPHELSLH------LDEFIRVKTGLQNVIQAGLLKEGLCAVQ 318
K T D N LKV HE + L+ I +K+ +++ +GL +Q
Sbjct: 189 QLK--TNLD-----NFLKVLHENKIDAEIINDLNNGITLKSNPRSIKNLPGYSDGLWTIQ 241
Query: 319 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA 378
D S+ + +++P+ G+ I+D CAAPG K+ ++A + + A+D + RL+IL
Sbjct: 242 DRSSQWIAPLLNPKEGEKILDACAAPGSKSTHLAELTNDSAEIIAVDRSAKRLKILQSNL 301
Query: 379 KLHQVNSVIRTIHAD---LRTFADNSTVKCDKVLLDAPCSGLGVLSKT 423
+ + SV T+ AD L DK+LLDAPCSG+G LS+
Sbjct: 302 ERLNLKSV-NTLKADATRLIELNPKFISYFDKILLDAPCSGIGTLSRN 348
>gi|337283502|ref|YP_004622973.1| RNA methyltransferase Sun [Streptococcus parasanguinis ATCC 15912]
gi|387878759|ref|YP_006309062.1| RNA methyltransferase Sun [Streptococcus parasanguinis FW213]
gi|419800678|ref|ZP_14325947.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
parasanguinis F0449]
gi|335371095|gb|AEH57045.1| RNA methyltransferase Sun [Streptococcus parasanguinis ATCC 15912]
gi|385694409|gb|EIG25015.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
parasanguinis F0449]
gi|386792216|gb|AFJ25251.1| RNA methyltransferase Sun [Streptococcus parasanguinis FW213]
Length = 437
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 103/324 (31%), Positives = 168/324 (51%), Gaps = 35/324 (10%)
Query: 107 LDDRDLRLVTDIVGGTI------RWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYE 160
L D+D VT++V GT+ W YL H+I +++T ++P + +L + Y+
Sbjct: 39 LSDKDRSFVTEVVYGTVARKITLEW--YLSHVI-----EDRT--KLDPWVYYLLMMSLYQ 89
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
+V LD +P +A+V+E VR+AK + + G+ VN ILRKL L++ LP ++ R
Sbjct: 90 LVYLDRIPDHAIVNEAVRIAK-SRKEGSEKFVNAILRKL--LREG----LPAVDTIKRKN 142
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
R + YS PVW+V+ + G+E A + SL ++ + DL +
Sbjct: 143 KR-YSVQYSLPVWLVKALIEEYGEERACAIFK--------SLYQRNKSSIRVVDLSEKEK 193
Query: 280 LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 339
L + + + VK + L KEG +QDES+ LV +D Q + ++D
Sbjct: 194 LAQELEASASLIASSALVKDQ-GHFAAHSLFKEGRITIQDESSQLVAPALDLQGDEWVLD 252
Query: 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHADLRTFA 398
CAAPGGKT ++AS L+ G V A+D+ +L+++ E A +LH + ++ R F
Sbjct: 253 ACAAPGGKTTHIASFLTT-GKVTALDLYDHKLKLIQENANRLHVADKILTKKLDATRVFE 311
Query: 399 DNSTVKCDKVLLDAPCSGLGVLSK 422
DKVL+DAPCSG+G++ +
Sbjct: 312 TFGPDAFDKVLVDAPCSGIGLIRR 335
>gi|158522242|ref|YP_001530112.1| sun protein [Desulfococcus oleovorans Hxd3]
gi|158511068|gb|ABW68035.1| sun protein [Desulfococcus oleovorans Hxd3]
Length = 468
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/319 (30%), Positives = 150/319 (47%), Gaps = 15/319 (4%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKT-FSSMEPLLLQILRIGFYEIVKLD- 165
+ RD LVT +V G +RWR LD+ I H +T M+P +L ILR+G +++ LD
Sbjct: 54 EKRDRALVTTLVYGVLRWRNTLDYTIV---HFSRTPLQRMDPAVLNILRLGLFQLRFLDR 110
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A ++ +V L+K A VNG+LR D+ +AL
Sbjct: 111 IPDFAAINSSVDLSKQAGLGRLSGFVNGLLRSSTRHPGEPDP-----PDMDKDPVQALCV 165
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
S P WM+RRW G EE ++L + N+ P ++R N + + L
Sbjct: 166 TKSFPEWMIRRWIARFGIEETVQLCDFLNTVPPITVRVNGLRAAPE-QVAASLAQEAAGV 224
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
H E + + V + G VQDE+A L+ + DP+PGQ ++D CA G
Sbjct: 225 TPGRHAPEAVSFSSPKVPVHEMTAFGAGWFQVQDEAAQLIGLLTDPRPGQRVLDACAGLG 284
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRL-RILNETAKLHQVNSVIRTIHADLRTFAD-NSTV 403
GKT ++A + QG + A D + +L R+ E +L N +R + D+
Sbjct: 285 GKTGHLARLMENQGRIVAADRDTAKLERLAGEMTRLGITN--VRPMTLDMLVPEQLKDAG 342
Query: 404 KCDKVLLDAPCSGLGVLSK 422
D+VL D PCSG GV+ +
Sbjct: 343 GFDRVLADCPCSGTGVIRR 361
>gi|222099955|ref|YP_002534523.1| Sun protein [Thermotoga neapolitana DSM 4359]
gi|221572345|gb|ACM23157.1| Sun protein [Thermotoga neapolitana DSM 4359]
Length = 431
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 157/313 (50%), Gaps = 26/313 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L+DRD R + ++V G +R LD I L + + P + LR+G Y+++ +D
Sbjct: 34 LNDRDRRFLKELVWGVMRKEELLDWYINQLLRN----PDIPPAVRVALRMGVYQLLFMDG 89
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P YA V E V+L K LVN +LR++ S+P P L
Sbjct: 90 VPDYAAVSETVKLVK---NENFKKLVNAVLRRV------KSVPPPS----------DLHL 130
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
+YSHP W+V W +L +E +++M W LR NS TR +++ L+
Sbjct: 131 VYSHPKWLVDYWRSFLPEEVVLRIMEWYQKPLPTVLRVNSL-VTTREEVIEILSKEGTEA 189
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
H + +K + + ++ EGL VQ ES+ +V ++D +P ++D C+APG
Sbjct: 190 IYGKHSPFSVVIKKLGVPLNDSKVITEGLATVQGESSQIVPLLMDLEPNMKVLDTCSAPG 249
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405
GKT ++A + +G + A D++ RL+++ + + +++SV + AD + +
Sbjct: 250 GKTTFIAELMKDKGEILATDVSMERLQLVEKHVRRLKLSSV-KIKLADAERLTEFIQDEF 308
Query: 406 DKVLLDAPCSGLG 418
D++L+DAPCS LG
Sbjct: 309 DRILVDAPCSSLG 321
>gi|392948710|ref|ZP_10314313.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
pentosus KCA1]
gi|392435987|gb|EIW13908.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
pentosus KCA1]
Length = 447
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 103/325 (31%), Positives = 163/325 (50%), Gaps = 27/325 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDH-LICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+D RD+ L+T++V G I+ R L+ L + H + ++P + ++L Y+ LD
Sbjct: 38 MDRRDINLLTNMVYGVIQHRLTLEFWLKPFVRHPHQ----LDPWVRELLLSALYQWQYLD 93
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLP-LPKLEGNDRAQARAL 223
+P AV +E + +AKV PG V G+L ++ D + LP +E D L
Sbjct: 94 KIPQRAVFNETIEIAKVKGHPGIRRFVTGVLHQM----DRSGLPAFDTIEDPDER----L 145
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
+ YS PVW+++ + LG + ++ N SLR N+ T +D+ L +
Sbjct: 146 SVTYSMPVWLIQELRRQLGATKMEAIIASLNQPAKQSLRVNTALS-TVSDVTTALTNAGL 204
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
E S + V G I ++ G+ VQDESA LVV ++PQPG ++D CAA
Sbjct: 205 TVEPSKISPLGLVVTDG--QAINTEAMRYGMFTVQDESAQLVVPALNPQPGDRVLDACAA 262
Query: 344 PGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR----TF 397
PGGKT +A+ L G V A+DI+ ++R++ + A V + D R F
Sbjct: 263 PGGKTTQIAAELDADAGGEVVALDIHANKVRLIGQNAARMHVADRVAATELDARKVQTQF 322
Query: 398 ADNSTVKCDKVLLDAPCSGLGVLSK 422
D S D++L+DAPCSGLG++ +
Sbjct: 323 DDES---FDRILVDAPCSGLGLMRR 344
>gi|126695788|ref|YP_001090674.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9301]
gi|126542831|gb|ABO17073.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9301]
Length = 438
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 102/348 (29%), Positives = 166/348 (47%), Gaps = 29/348 (8%)
Query: 87 GSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEK-TFSS 145
SGD +E+ L + + D+ +T++ G IR+R++LD H K T
Sbjct: 19 SSGDFSDHALEKVL--KNYQFNPLDIAFITELSFGCIRYRKFLD---LWTDHTSKITHKK 73
Query: 146 MEPLLLQILRIGFYEIVKLDMPPY-AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDN 204
P L +L IG Y+++K+D P+ A + V +AK G VN ILR +
Sbjct: 74 QPPKLRWLLHIGLYQLLKMDKIPFPAAISTTVEVAKKTDLNGLAGTVNAILRNASRKLEQ 133
Query: 205 NSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN 264
P + +R ++ + S P+W+V+ K++G E ++ N PS LR N
Sbjct: 134 KIFPELSSDRKER-----ISYLESFPLWLVKDLYKWVGNSEGENIIKALNKKPSIDLRIN 188
Query: 265 SRKGVTRADLVMQLNLLKVPHELSLH------LDEFIRVKTGLQNVIQAGLLKEGLCAVQ 318
K T D N LKV HE + L I +K+ +++ +GL +Q
Sbjct: 189 KLK--TNLD-----NFLKVLHENKIDAEIIKDLHNGITLKSNPRSIKNLPGYSDGLWTIQ 241
Query: 319 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA 378
D S+ + +++P+ G+ I+D CAAPG K+ ++A + + A+D + RL+IL
Sbjct: 242 DRSSQWIAPLLNPKQGEKILDACAAPGSKSTHLAELTNDSSEIIAVDRSAKRLKILQSNL 301
Query: 379 KLHQVNSVIRTIHADLRTFAD---NSTVKCDKVLLDAPCSGLGVLSKT 423
+ + SV T+ AD + + DK+LLDAPCSG+G LS+
Sbjct: 302 ERLNLKSV-NTLKADATSLIELNPKFISYFDKILLDAPCSGIGTLSRN 348
>gi|417315470|ref|ZP_12102146.1| 16S rRNA methyltransferase B [Listeria monocytogenes J1816]
gi|328466174|gb|EGF37331.1| 16S rRNA methyltransferase B [Listeria monocytogenes J1816]
Length = 399
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 100/347 (28%), Positives = 180/347 (51%), Gaps = 34/347 (9%)
Query: 115 VTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP--LLLQILRIGFYEIVKLD-MPPYAV 171
+T++V GT + + LD+ + F + EP + +LR+ Y++ LD +P +A+
Sbjct: 1 MTELVYGTTQRKITLDYYLA-------PFLNKEPDNWVKNLLRMSVYQLTFLDKVPEHAI 53
Query: 172 VDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG-NDRAQARALATIYSHP 230
++E +AK G VNG+LR ++ +P ++ D Q A+ T S P
Sbjct: 54 LNEAGDIAKDLGHQGVTKFVNGVLRNVI------RKGVPSIDAIKDPVQKIAVET--SLP 105
Query: 231 VWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLH 290
W+ +RW G E+ ++ + P S+R N + + L+ +LN + +
Sbjct: 106 EWLAKRWADQYGIEKLREIGLAFLVAPHQSIRVNQTE-IPTEQLIKELNDQGITVTRNEF 164
Query: 291 LDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLY 350
++E + V+ G +V + K+G C++QDES+ L + + +++D CAAPGGKT +
Sbjct: 165 IEEALLVEKG--SVAETKAYKDGKCSIQDESSMLAAYALQLEDNLTVLDACAAPGGKTTH 222
Query: 351 MASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVL 409
+A + G G+V+A+DI++ + +++++ AK Q+ + IRT H D RT + + D++L
Sbjct: 223 IAEKMHGTGMVHALDIHEKKTKLIDQAAKRLQLLN-IRTAHLDARTASTMFEPETFDRIL 281
Query: 410 LDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
+DAPCSG GVL R ++Y KT + L E + +L
Sbjct: 282 VDAPCSGFGVL----------RRKPDIKYAKTEKDIHKLAEIQLAIL 318
>gi|322391001|ref|ZP_08064506.1| RNA methyltransferase Sun [Streptococcus parasanguinis ATCC 903]
gi|321142305|gb|EFX37778.1| RNA methyltransferase Sun [Streptococcus parasanguinis ATCC 903]
Length = 437
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 165/318 (51%), Gaps = 23/318 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D+D VT++V GT+ + L+ + + D + ++P L +L + Y++V LD
Sbjct: 39 LSDKDRSFVTEVVYGTVARKITLEWYLAHVIEDR---TKLDPWLYYLLMMSLYQLVYLDR 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+V+E VR+AK + G+ VN ILRKL L++ LP ++ R R +
Sbjct: 96 IPDHAIVNEAVRIAK-RRKEGSEKFVNAILRKL--LREG----LPAIDTIKRKNKR-YSV 147
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
YS PVW+V+ + G+E A + SL ++ + DL + L ++
Sbjct: 148 EYSLPVWLVKALIEEYGEERACAIFK--------SLYQRNKSSIRVIDLDEKEELAQLFE 199
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
S L VK + L KEG +QDES+ LV +D Q + ++D CAAPG
Sbjct: 200 ATSSLLAPSALVKEQ-GHFAAHSLFKEGRITIQDESSQLVAPALDLQGDEWVLDACAAPG 258
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHADLRTFADNSTVK 404
GKT ++AS L+ G V A+D+ +L+++ E A +LH + ++ + F
Sbjct: 259 GKTTHLASYLTT-GKVTALDLYDHKLKLIQENANRLHVADKILTKKLDATKVFETFGPDA 317
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG+G++ +
Sbjct: 318 FDKILVDAPCSGIGLIRR 335
>gi|429505125|ref|YP_007186309.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|429486715|gb|AFZ90639.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
Length = 447
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 90/323 (27%), Positives = 173/323 (53%), Gaps = 16/323 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+T L D+D L+T++V GT++ + LD+++ + + ++ ++Q+LR+ Y++
Sbjct: 32 IKTNTLSDQDRGLLTELVYGTLQNKIALDYMLKPFI---RKPNKVKLWVIQLLRLSAYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK G + VNGILR L + + ++E
Sbjct: 89 EYLEKIPDRAAIHEAVEIAKKRGHKGIASFVNGILRSL---QREGAPSFAEIED----PV 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
L+T SHP W+V+ W + G E A K+ + P +LR N K R ++ ++
Sbjct: 142 LRLSTETSHPEWLVKEWVEAYGFEAAEKICRIHLIPPKQTLRVNHIKS-DRETVLNEMEN 200
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ E + I++ G ++ + G ++QDES+ LV +DP+PG++++D
Sbjct: 201 AGLEAEAGDLSPDAIKLLKG--SIANTAFFQNGGVSIQDESSMLVARALDPKPGETVLDA 258
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD- 399
CAAPGGK+ ++A + +G + ++D+++ +++++ E A+ + ++I D R +
Sbjct: 259 CAAPGGKSAHIAELMENEGSLTSLDLHRHKVKLIKEGAERLGL-TIIDAQTMDARKAGEV 317
Query: 400 NSTVKCDKVLLDAPCSGLGVLSK 422
+ D+VL+DAPCSG GV+ +
Sbjct: 318 FGAERFDRVLVDAPCSGFGVIRR 340
>gi|291557813|emb|CBL34930.1| ribosomal RNA small subunit methyltransferase RsmB [Eubacterium
siraeum V10Sc8a]
Length = 439
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 90/323 (27%), Positives = 161/323 (49%), Gaps = 14/323 (4%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYE 160
F D D RD + G + R LD+LI E F ++ +++ILR+GFY+
Sbjct: 29 AFTQNDADRRDKAFSAALFYGVLERRMTLDYLIRYYSGIE--FDKIKTAVVEILRMGFYQ 86
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
++ ++ +P A V+E+V L A VN ILR L++ + L G +
Sbjct: 87 LLFMNSVPDSAAVNESVALCDYCNSTKAKGYVNAILR--TFLRNEKQIDYGNLTGEAK-- 142
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
L+ YS P W+V++W LG++ A++++ P R N+ + T D++ +L
Sbjct: 143 ---LSIEYSCPKWLVKKWNSELGEQRAMQMINSCFGRPPIYARVNTVR-YTVDDVIGELE 198
Query: 280 LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 339
+ + +D I + + + Q+ K+G+ +QD S+ + + P +++VD
Sbjct: 199 SEGISATKNSLIDACIEL-ANTKGIEQSSAYKKGMFHIQDISSQICCKIAAPVFNETVVD 257
Query: 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 399
C+APGGKT A ++ +G +Y+ D+ G++ ++ TAK + ++I D F +
Sbjct: 258 LCSAPGGKTFTCAEIMNDRGRIYSYDLYDGKVSVIANTAKRLDL-TIITAAENDATKF-N 315
Query: 400 NSTVKCDKVLLDAPCSGLGVLSK 422
K D+V+ D PCSGLGV+ +
Sbjct: 316 PGIPKADRVICDVPCSGLGVIRR 338
>gi|157412841|ref|YP_001483707.1| Sun protein [Prochlorococcus marinus str. MIT 9215]
gi|157387416|gb|ABV50121.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9215]
Length = 438
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 167/343 (48%), Gaps = 19/343 (5%)
Query: 87 GSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEK-TFSS 145
SGD +E+ L + + D+ +T++ G IR+R++LD H K T
Sbjct: 19 SSGDFSDHALEKVL--KNYQFNSLDIAFITELSFGCIRYRKFLD---LWTDHTSKITHKK 73
Query: 146 MEPLLLQILRIGFYEIVKLDMPPY-AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDN 204
P L +L IG Y+++K+D P+ A + V +AK G VN ILR +
Sbjct: 74 QPPKLRWLLHIGLYQLLKMDKIPFPAAISTTVEVAKKTDLNGLAGTVNAILRNASRKLEQ 133
Query: 205 NSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN 264
P + +R ++ + S P+W+V+ K++G E ++ N PS LR N
Sbjct: 134 KIFPELSSDKKER-----ISYLESFPLWLVKDLYKWVGNSEGENIIKAFNKKPSIDLRIN 188
Query: 265 SRK-GVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAG 323
K + + +V+ N K+ E+ L I +K+ +++ +GL +QD S+
Sbjct: 189 QLKTNLDKFLIVLYEN--KIDAEIIKDLHNGITLKSNPRSIKNLPGYSDGLWTIQDRSSQ 246
Query: 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV 383
+ +++P+ G+ I+D CAAPG K+ ++A + + A+D ++ RL+IL +
Sbjct: 247 WIAPLLNPKEGEKILDACAAPGSKSTHLAELTNDSAEILAVDRSEKRLKILQSNLVRLNL 306
Query: 384 NSVIRTIHADLRTFAD---NSTVKCDKVLLDAPCSGLGVLSKT 423
SV T+ AD + + DK+LLDAPCSG+G LS+
Sbjct: 307 KSV-NTLKADATSLIELNPKFISYFDKILLDAPCSGIGTLSRN 348
>gi|320352726|ref|YP_004194065.1| sun protein [Desulfobulbus propionicus DSM 2032]
gi|320121228|gb|ADW16774.1| sun protein [Desulfobulbus propionicus DSM 2032]
Length = 450
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 102/328 (31%), Positives = 154/328 (46%), Gaps = 28/328 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ L D D LV ++ G +R + YLDH+ L + M+P L LRIG Y+++ L
Sbjct: 35 EQLPDIDRGLVKTLIYGVLRQKEYLDHI--LRTFAKHPLRKMKPRTLMTLRIGVYQLLFL 92
Query: 165 D-MPPYAVVDENVRLAKVALRPG-AGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
+P A V+ V K A +P VNGILR + + LP P+ +A
Sbjct: 93 SRIPESAAVNATVNTLKAASQPAWLIGFVNGILRAVA--RQRTQLPTPE------QMTQA 144
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR-------KGVTRADLV 275
I +HP+W+V RW G+ A + NN +P +LR N R K + +
Sbjct: 145 EPPILNHPIWLVDRWRAEFGEATARAICACNNIEPPLTLRVNRRQTSRPLLKALLEKSGI 204
Query: 276 MQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
M N P ++L +D F L ++G VQDE+A L + P P +
Sbjct: 205 MARNGFFSP--VALIIDTFPGAVAALPGY------QQGHFQVQDEAAQLASLLTGPLPAR 256
Query: 336 S-IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 394
I+D CA GGKT ++A L G + A++ + R R+L + + N+ + ADL
Sbjct: 257 CRILDGCAGLGGKTSHLAEMLPSDGAIVAVEPDSRRYRLLRDNLRRLGHNAQALPVRADL 316
Query: 395 RTFADNSTVKCDKVLLDAPCSGLGVLSK 422
R +A D +L+DAPCSG GV+ +
Sbjct: 317 RAYAATRPQPFDAILIDAPCSGTGVIRR 344
>gi|332159134|ref|YP_004424413.1| sun protein (fmu protein) [Pyrococcus sp. NA2]
gi|331034597|gb|AEC52409.1| sun protein (fmu protein) [Pyrococcus sp. NA2]
Length = 450
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 153/297 (51%), Gaps = 14/297 (4%)
Query: 124 RWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVAL 183
+WR +D +I + + ++P L +LRIG +E+ + P D VR+ K
Sbjct: 59 KWRAKIDFIINSVLKGSRV-EDLDPYLANLLRIGVFEMKFKGVNPAIATDSIVRVVKEKF 117
Query: 184 RPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQ 243
N ILR++ K N L KL+ DR L+ +SHP W V LG
Sbjct: 118 DLTRAKFANAILREVE--KFNVEKALRKLKEKDRIVW--LSIRFSHPRWYVEYVVNLLGY 173
Query: 244 EEAIKLMVWNNSDPSFSLRANSRKG-VTRADLVMQLNLLKVPHELSLH-LDEFIRVKTGL 301
+EA++L++ N + +R N+ K V + ++ N +KV SL +D+ ++V
Sbjct: 174 DEAVRLLLSNMRPQRYYVRVNTLKADVDKVRKYLEDNGVKV----SLTPVDDVLKVLDYE 229
Query: 302 QNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLV 361
+ V + K+G +QD ++ V V++P+PG+ ++D AAPG KT + A+ + +G +
Sbjct: 230 KPVTKLEWYKKGYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEI 289
Query: 362 YAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLG 418
A+D + RL + E K+ V +V + +HAD ++F D K DKV+LDAPCS G
Sbjct: 290 VAVDYSYDRLMKMKERMKILGVKNV-KLVHADGQSFLDKD--KFDKVILDAPCSSSG 343
>gi|365904219|ref|ZP_09441978.1| 16S rRNA methyltransferase B [Lactobacillus versmoldensis KCTC
3814]
Length = 440
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 172/329 (52%), Gaps = 30/329 (9%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ DL + D RL+T+IV G ++ R L++ I D+K +E ++ +L Y++
Sbjct: 30 LKKSDLSNADSRLMTNIVYGVLQHRYVLEYQIKPYIQDKK----VEQWVMILLMTAVYQM 85
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
LD +P +A+ +E+V +AK G GN V +LR + + LPK GN +
Sbjct: 86 QYLDKVPEHAIFNESVEIAKANGNKGVGNFVTAVLRNY---QRHGFQELPK--GN---SS 137
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN- 279
AL+ YS P+W+V + G +A ++ N S+R N+ K ++ +DL +L+
Sbjct: 138 HALSLRYSTPIWLVDLLIQQQGMNKAKSVLESINQASDISIRVNTNK-ISVSDLSEKLSS 196
Query: 280 --LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 337
P ++S + + N++ ++GL +QDES+ V ++ + + +
Sbjct: 197 QGFDMKPSQISA-----VGLTCPHGNLVDTEEFRQGLFTIQDESSMTVAPALNLKDDELV 251
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR-- 395
+D CAAPGGKT ++AS L+ G V +DI+K + +++ E ++ +I+T D R
Sbjct: 252 LDSCAAPGGKTTHIASYLTN-GSVMGLDIHKPKTKLIQENSQRLGYEDIIKTKALDARKA 310
Query: 396 --TFADNSTVKCDKVLLDAPCSGLGVLSK 422
F NS DK+L+DAPCSGLG++ +
Sbjct: 311 KDAFEPNS---FDKILVDAPCSGLGLIRR 336
>gi|223478128|ref|YP_002582529.1| tRNA/RNA cytosine-C5-methylase [Thermococcus sp. AM4]
gi|214033354|gb|EEB74181.1| tRNA/RNA cytosine-C5-methylase [Thermococcus sp. AM4]
Length = 451
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 91/303 (30%), Positives = 152/303 (50%), Gaps = 26/303 (8%)
Query: 124 RWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVAL 183
+WR +D +I + K ++P L +LRIG +EI +PP D VR+ K
Sbjct: 59 KWRGKIDFIINSVLRGSKV-EDLDPYLANLLRIGTFEIHFRKVPPAIATDSVVRVVKERF 117
Query: 184 RPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQ 243
VN ++ + K + L +L+ DR + L+ +SHP W V + LG
Sbjct: 118 DFSRAKFVNALMHSIE--KFDVERALKRLKERDRIEW--LSVRFSHPRWYVEYVIELLGY 173
Query: 244 EEAIKLMVWNNSDPSFSLRANSRKGVTRADLV--------MQLNLLKVPHELSLHLDEFI 295
+EA++L++ NN + +RAN+ K T D + ++ L VP + +
Sbjct: 174 DEAVRLLLSNNRPQRYYVRANTLK--TDVDSLRDYLEENGVRTALTPVP--------DVL 223
Query: 296 RVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL 355
+V V + KEG +QD ++ V V+ P+PG+ ++D AAPG KT + A+ +
Sbjct: 224 KVLDYRTPVTRLDWYKEGKFVIQDLASAYVAHVLAPEPGERVLDLAAAPGSKTFHAAALM 283
Query: 356 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCS 415
+G + A+D + RL + E KL + +V + +HAD ++F D + K D+++LDAPCS
Sbjct: 284 ENRGEIVAVDYSYDRLMRMKEKMKLLGIKNV-KLVHADGQSFRDKA--KFDRIILDAPCS 340
Query: 416 GLG 418
G
Sbjct: 341 SSG 343
>gi|333897220|ref|YP_004471094.1| sun protein [Thermoanaerobacterium xylanolyticum LX-11]
gi|333112485|gb|AEF17422.1| sun protein [Thermoanaerobacterium xylanolyticum LX-11]
Length = 447
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 156/320 (48%), Gaps = 16/320 (5%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLI--CLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
+L D D + +IV GTI ++ LD +I C K ++ +L IL +G Y+I+
Sbjct: 33 ELRDIDKSFIKEIVFGTIERKQTLDQIIDHC----SSKGSKKIDNKILIILEMGLYQIIY 88
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
+D +P YA + E V LAK A VN +LR NS + L D+
Sbjct: 89 MDKVPQYAAISEAVNLAKEYAGIHASKFVNAVLRNYA----RNSAKIDILRS-DKNVVEY 143
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
LA YS+P W+V+R + ++ N P S+R N+ K + D L
Sbjct: 144 LAFKYSYPEWIVKRLLNNYDKAATEDILKSLNEKPQISIRLNTLK-IGSKDFEKILIDKG 202
Query: 283 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
+ + ++D+ + L+N+ + K G +QDE A ++ V+ P P I+D C+
Sbjct: 203 LNFKKGSYVDDAYYI--DLKNIAGDEIYKNGFMQIQDEGAMIISKVLSPNPDDLIIDVCS 260
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402
APGGKT +++ ++ +G V A DI++ ++ ++ K VN+V + D +
Sbjct: 261 APGGKTTHISQLMNNKGKVIAFDIHEHKIDLIRMNCKRLGVNNVDAYVF-DSTKINEKYI 319
Query: 403 VKCDKVLLDAPCSGLGVLSK 422
K DKVL D PC+G+G++ K
Sbjct: 320 EKADKVLADVPCTGIGIIRK 339
>gi|300811705|ref|ZP_07092180.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
delbrueckii subsp. bulgaricus PB2003/044-T3-4]
gi|300497332|gb|EFK32379.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
delbrueckii subsp. bulgaricus PB2003/044-T3-4]
Length = 438
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 174/349 (49%), Gaps = 34/349 (9%)
Query: 113 RLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAV 171
RL T++V GTI+++ YL++ + L ++PLLL + Y+I LD +P AV
Sbjct: 42 RLATNLVYGTIQYQLYLEYQLKDLVKARLREPYIKPLLL----MSAYQIFFLDKVPNRAV 97
Query: 172 VDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
+DE +LAK RP + LVNGILR L+ ++ LP+ + D L+ S
Sbjct: 98 LDEANKLAKGYGRPKSSGYRLVNGILRSLLRRRE----VLPEKDAPDY-----LSVKCSM 148
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK-VPHELS 288
P+W+ + G+ A K+M NS +R ++ R +V L+ P E
Sbjct: 149 PLWLSDYFVANWGKSRAEKIMASFNSKAKNEIRISALADEKR--VVRDLDRAHFAPQESP 206
Query: 289 LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKT 348
L + + G ++ K+G VQDE+A LV D + + +D C+APGGKT
Sbjct: 207 LASRSYALSRGG---IVMTDFFKDGEVTVQDEAASLVAEAFDFKGNEQALDACSAPGGKT 263
Query: 349 LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDK 407
+ +A L G V A+DI++ +LR++ E A +V ++ D R + S + DK
Sbjct: 264 IQIAEQLP-DGQVTALDIHEKKLRLVKENAARMRVADRVKVKALDARKAREYFSGQEFDK 322
Query: 408 VLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
+L+DAPCSGLG+L R +RY KT+ + HL E + +L
Sbjct: 323 ILIDAPCSGLGLL----------RRKPEIRYTKTAEDISHLAEIQLDIL 361
>gi|374708693|ref|ZP_09713127.1| 16S rRNA methyltransferase B [Sporolactobacillus inulinus CASD]
Length = 451
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 101/324 (31%), Positives = 167/324 (51%), Gaps = 28/324 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSS-MEPLLLQILRIGFYEIVKLD 165
L + D RLVT +V G ++ + L + + ++ + +E LLL + Y+ V LD
Sbjct: 37 LRENDKRLVTTLVYGVLQQKSVLRFYLSSFVNRKRKLDAWVEMLLL----LSIYQKVFLD 92
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A+V+E+V +AK G VNGILR+L+ +P L Q R L+
Sbjct: 93 RIPDHAIVNESVTIAKKRGHRGISGFVNGILRRLM------REGVPSLSSITPEQKR-LS 145
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL---NLL 281
YSHP W+++ W + + A+K +N P+ LR N R ++R +L+ L +
Sbjct: 146 IQYSHPEWLLKLWREQWDLDTAVKTAQADNQPPNLCLRVN-RLKLSRQELMEHLAQEGIQ 204
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
VP LSL + I V +G N + ++G VQDES+ LV V + I+D C
Sbjct: 205 TVPGPLSL---DCIVVTSG--NAVATAAFQKGWFTVQDESSMLVADCVGAEDNMLILDAC 259
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK---LHQVNSVIRTIHADLRTFA 398
A PGGKT ++ ++ +G + A+D++ + +++++ A L + + A TF
Sbjct: 260 AGPGGKTTHLGERMNNKGKIIALDLHPHKTKLIDQAANRLGLENIETRAMDARAARDTFG 319
Query: 399 DNSTVKCDKVLLDAPCSGLGVLSK 422
+ + D+VLLD PCSGLGV+ +
Sbjct: 320 EAA---FDRVLLDVPCSGLGVIRR 340
>gi|258645366|ref|ZP_05732835.1| ribosomal RNA small subunit methyltransferase B [Dialister invisus
DSM 15470]
gi|260402715|gb|EEW96262.1| ribosomal RNA small subunit methyltransferase B [Dialister invisus
DSM 15470]
Length = 454
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 98/325 (30%), Positives = 165/325 (50%), Gaps = 31/325 (9%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L + L+T+++ G R Y +I L+ ++ + P + +L +G Y+IV LD
Sbjct: 43 LKKEERHLLTELIYGVCRKYNYCLWMISLI--SDRPMFKIHPAVRILLALGIYQIVFLDR 100
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL-- 223
+P A V+E V++AK G +NG+LR L+ SL LP DR R
Sbjct: 101 IPESAAVNETVKIAKKVTHIGNVKFINGVLRNF--LRRRGSLTLP-----DRTSNRVFYE 153
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
+ IY+ P W++R + K G ++ K++ N+ +R N+ K + D+ QL L +
Sbjct: 154 SLIYNQPEWLIRFFEKEYGMGQSEKILKAFNTISDTCIRVNTLK-IETDDIKKQLKLRNI 212
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
++ E + +K G +++ + L+ GL +Q S+ + V+ P G ++D CAA
Sbjct: 213 SVGDISYMPEALAIKAG-TDILFSEFLQTGLIYIQTASSMIPAKVLGPDAGDHVLDMCAA 271
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403
PG KT ++A+ + +G + A D+ +++++ + AK I IH ++R +V
Sbjct: 272 PGSKTTHIAALMGNRGSIDAWDVYPHKVKLIKDNAK----RLGISIIHTEVR-----DSV 322
Query: 404 K--------CDKVLLDAPCSGLGVL 420
K DKVLLDAPCSGLGVL
Sbjct: 323 KPLPFLYETYDKVLLDAPCSGLGVL 347
>gi|404329182|ref|ZP_10969630.1| RNA-binding protein Sun [Sporolactobacillus vineae DSM 21990 =
SL153]
Length = 448
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 103/355 (29%), Positives = 177/355 (49%), Gaps = 33/355 (9%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L+ RD LVT +V G ++ R LD+++ +K ++ LL R+ Y+ + LD
Sbjct: 37 LNGRDKALVTTLVYGVLQHSRTLDYILAFYVSGKKPDLWVDLLL----RLSLYQKIYLDR 92
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+V+E R+A G VN +LR+ L++ +P L + +++ L+
Sbjct: 93 IPDHAIVNEAARIAGKRGHHGIVGFVNAVLRRF--LREG----VPDL-NRIQPESKRLSI 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL---VMQLNLLK 282
YSHP W++ W + A+K+ +N P +R N R R +L + Q +
Sbjct: 146 QYSHPEWLLSLWAGQWDSDTAVKIAESDNQAPPSFVRVN-RLHTDRHELEAILEQDGMQT 204
Query: 283 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
P LS + + +K G ++ GL +QDES+ LV V P+ G +++D CA
Sbjct: 205 EPGRLS---PDCLEIKGG--HIAGTRAFATGLMTIQDESSMLVADAVAPEKGMTVLDACA 259
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NS 401
PGGKT ++ + G + A+D+++ + ++++++AK V + IRT D R S
Sbjct: 260 GPGGKTTHLGERMQNSGQIIALDLHEHKTKLIDQSAKRLGVTN-IRTKAMDAREAGSFFS 318
Query: 402 TVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
D++LLD PCSGLGV+ + +R+ K+ + HL E + LL
Sbjct: 319 PASFDRLLLDVPCSGLGVIRRK----------PEIRWDKSPEDLGHLAEIQNALL 363
>gi|167750828|ref|ZP_02422955.1| hypothetical protein EUBSIR_01811 [Eubacterium siraeum DSM 15702]
gi|167656263|gb|EDS00393.1| ribosomal RNA small subunit methyltransferase B [Eubacterium
siraeum DSM 15702]
Length = 439
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 90/323 (27%), Positives = 161/323 (49%), Gaps = 14/323 (4%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYE 160
F D D RD + G + R LD+LI E F ++ +++ILR+GFY+
Sbjct: 29 AFTQNDADRRDKAFSAALFYGVLERRMTLDYLIRYYSGIE--FDKIKTAVVEILRMGFYQ 86
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
++ ++ +P A V+E+V L A VN ILR L++ + L G +
Sbjct: 87 LLFMNSVPDSAAVNESVALCDYCNSTKAKGYVNAILR--TFLRNEKQIDYGNLTGEAK-- 142
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
L+ YS P W+V++W LG++ A++++ P R N+ + T D++ +L
Sbjct: 143 ---LSIEYSCPKWLVKKWNSELGEQRAMQMINSCFGRPPIYARVNTVR-YTVDDVIGELE 198
Query: 280 LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 339
+ + +D I + + + Q+ K+G+ +QD S+ + + P +++VD
Sbjct: 199 SEGISAAKNSLIDACIEL-ANTKGIEQSSAYKKGMFHIQDISSQICCKIAAPVFNETVVD 257
Query: 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 399
C+APGGKT A ++ +G +Y+ D+ G++ ++ TAK + ++I D F +
Sbjct: 258 LCSAPGGKTFTCAEIMNDRGRIYSYDLYDGKVSVIANTAKRLGL-TIITAAENDATKF-N 315
Query: 400 NSTVKCDKVLLDAPCSGLGVLSK 422
K D+V+ D PCSGLGV+ +
Sbjct: 316 PDIPKADRVICDVPCSGLGVIRR 338
>gi|337283536|ref|YP_004623010.1| sun protein (fmu protein) [Pyrococcus yayanosii CH1]
gi|334899470|gb|AEH23738.1| sun protein (fmu protein) [Pyrococcus yayanosii CH1]
Length = 450
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 148/296 (50%), Gaps = 12/296 (4%)
Query: 124 RWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVAL 183
+WR +D +I + K ++P L +LRIG +E+ + P D VR+ K
Sbjct: 59 KWRAKIDFIINSVLRGSKV-DDLDPYLANLLRIGTFEMKFKGVNPAIATDSIVRVVKERF 117
Query: 184 RPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQ 243
VN ILR++ K + L KL+ DR + L+ +SHP W V LG
Sbjct: 118 DLAKAKFVNAILREVE--KFDVERALKKLKEKDRVEW--LSVRFSHPRWYVEYVINLLGY 173
Query: 244 EEAIKLMVWNNSDPSFSLRANSRKG-VTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQ 302
+EA++L++ N + +R N+ K V + ++ N ++V + +D+ ++V
Sbjct: 174 DEAVRLLLSNLRPQRYYIRVNTLKADVDKVKKYLEENGVRVAY---TPVDDVLKVLDYET 230
Query: 303 NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVY 362
V + K G +QD ++ V V+ P+PG+ ++D AAPG KT + A+ + +G +
Sbjct: 231 PVTRLEWYKRGYFVIQDLASAYVAHVLKPEPGERVLDLAAAPGSKTFHAAALMENKGEIV 290
Query: 363 AIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLG 418
A+D + RL + E K V +V R +HAD + F D DK++LDAPCS G
Sbjct: 291 AVDYSYERLIKMKERMKRLGVKNV-RLVHADGQNFKDERDF--DKIILDAPCSSSG 343
>gi|104774278|ref|YP_619258.1| RNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
11842]
gi|103423359|emb|CAI98212.1| Putative RNA methylase [Lactobacillus delbrueckii subsp. bulgaricus
ATCC 11842]
Length = 438
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 34/349 (9%)
Query: 113 RLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAV 171
RL T++V GTI+++ YL++ + L ++PLLL + Y+I LD +P AV
Sbjct: 42 RLATNLVYGTIQYQLYLEYQLKDLVKARLREPYIKPLLL----MSAYQIFFLDKVPNRAV 97
Query: 172 VDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
+DE +LAKV RP + LVNGIL L L+ LP ++ L+ S
Sbjct: 98 LDEANKLAKVYGRPKSSGYRLVNGILHSL--LRRGEVLP-------EKDAPDYLSVKCSM 148
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK-VPHELS 288
P+W+ + G+ A K+M NS +R ++ R +V L+ P E
Sbjct: 149 PLWLSDYFVANWGKSRAEKIMASFNSKAKNEIRISALADEKR--VVRDLDRAHFAPQESP 206
Query: 289 LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKT 348
L + + G ++ K+G VQDE+A LV D + + +D C+APGGKT
Sbjct: 207 LASRSYALSRGG---IVMTDFFKDGEVTVQDEAASLVAEAFDFKGNEQALDACSAPGGKT 263
Query: 349 LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDK 407
+ +A L G V A+DI++ +LR++ E A +V ++ D R + S + DK
Sbjct: 264 IQIAEQLP-DGQVTALDIHEKKLRLVKENAARMRVADRVKVKALDARKAREYFSGQEFDK 322
Query: 408 VLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
+L+DAPCSGLG+L R +RY KT+ + HL E + +L
Sbjct: 323 ILIDAPCSGLGLL----------RRKPEIRYTKTAEDISHLAEIQLDIL 361
>gi|406872887|gb|EKD23235.1| hypothetical protein ACD_82C00190G0003, partial [uncultured
bacterium]
Length = 382
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 96/305 (31%), Positives = 154/305 (50%), Gaps = 32/305 (10%)
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAK 180
GTIRW L+ ++ LL D K S+ +LL +G Y+++ L P YAV++E V K
Sbjct: 18 GTIRWYYRLNGILKLLVKDTKKLDSLIRILL---LVGLYQLIYLRKPDYAVLNETVEATK 74
Query: 181 VALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK- 239
+P A LVN +LR + + L KLE N+ T YSHP+W++ K
Sbjct: 75 YLDKPWATALVNAVLRNFL---RQQKILLAKLESNE-------ITKYSHPLWIINALKKA 124
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKT 299
Y Q + I ++ NN P LR N ++ + Q + LK+ ++ L++
Sbjct: 125 YPKQWKNI--LIANNQYPPMHLRVNKQQ-------ISQSDYLKLLPSQNITLEK------ 169
Query: 300 GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQG 359
+NV ++GL +VQD SA ++D +PGQ ++D CAAPGGKT ++
Sbjct: 170 -PRNVTDLPGFQDGLVSVQDLSAQYTTTLLDLKPGQIVLDACAAPGGKTAHILETEPHLQ 228
Query: 360 LVYAIDINKGRLRILNETAKLHQVN--SVIRTIHADLRTFADNSTVKCDKVLLDAPCSGL 417
+ DI++ RL + E +++ +I+ I D+ + + D++LLDAPCSG
Sbjct: 229 KLIVCDIDELRLNKVRENLTRLKLDYKEIIKFIFCDITITHELDNIIFDRILLDAPCSGS 288
Query: 418 GVLSK 422
GV+ +
Sbjct: 289 GVIRR 293
>gi|395243947|ref|ZP_10420925.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
hominis CRBIP 24.179]
gi|394483779|emb|CCI81933.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
hominis CRBIP 24.179]
Length = 438
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 106/351 (30%), Positives = 174/351 (49%), Gaps = 31/351 (8%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L D L T IV GTI+++ YL++ + L ++PLLL + Y+ L+
Sbjct: 35 NLSHTDKALATKIVYGTIQYKIYLEYQLKPLIKTRLKDKFIKPLLL----MSAYQYFFLE 90
Query: 166 -MPPYAVVDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
+P A+ DE +LAK + +G+ LVNGILR L D LP+ + + +
Sbjct: 91 KVPTNAIFDEANKLAKSFGKKNSGSYRLVNGILRSL----DRRGEILPQ----KQDEIKY 142
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
L+ YS+P W+V+ + G + +++ N S+R + + + L K
Sbjct: 143 LSVKYSYPEWLVKYLIEQFGSKTGPEILESGNKAIPVSIRITANGQLQEVE--QALTKEK 200
Query: 283 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
+ L+ D + V G V++ L KEG +QD +A L V D + ++D CA
Sbjct: 201 FEYRLTPLTDHNLFVHPG--QVVKTDLFKEGKITIQDSAASLAVDAFDFNGDEKVLDACA 258
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S 401
APGGKT+ +A L G V A+DI++ +L ++ AK +V+ ++T D R D S
Sbjct: 259 APGGKTVQIAEHLI-TGTVTALDIHENKLSLIKNAAKRLKVSEKVKTKACDARLAKDYFS 317
Query: 402 TVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETK 452
+ DK+L+DAPCSGLG++ R +RY K+ ++HL + +
Sbjct: 318 QKQFDKILVDAPCSGLGLI----------RRKPEIRYEKSLADIEHLSKIQ 358
>gi|331701497|ref|YP_004398456.1| sun protein [Lactobacillus buchneri NRRL B-30929]
gi|329128840|gb|AEB73393.1| sun protein [Lactobacillus buchneri NRRL B-30929]
Length = 443
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 111/352 (31%), Positives = 168/352 (47%), Gaps = 34/352 (9%)
Query: 111 DLRLVTDIVGGTIRWRRYLDH-LICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPP 168
D L T+IV G I+ R L++ L L EKT E + ++L Y++ LD +P
Sbjct: 42 DKGLFTNIVYGVIQHRLTLEYQLRPFLREPEKT----EAWVKELLYTAMYQLEYLDRVPK 97
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
A+ DE +++AK G V GIL ++ + +P L+ + R L+ YS
Sbjct: 98 RAIFDETIKIAKQMGHDGTRRFVTGILHQM------DRQGMPNLDDIQDEKTR-LSIEYS 150
Query: 229 HPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELS 288
P W+V + LG+ + ++ N P S+RAN K +++ DL+ L E S
Sbjct: 151 VPTWLVEMLDEQLGKPKTASILASLNKAPKQSVRANLAK-ISQKDLLADLAKDGYDAEPS 209
Query: 289 LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKT 348
E I + G +I + +GL +QDESA L V + P +++D C+APGGKT
Sbjct: 210 QVSSEGIIINDG--QIIHSDFFTDGLLTIQDESAMLPVESMQISPDNNVLDACSAPGGKT 267
Query: 349 LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR----TFADNSTVK 404
+AS L G V+A+DI+K +L+ + A V + T D R F D
Sbjct: 268 TQIASRLKA-GKVFALDIHKNKLKTVQRNATRLGVYKQVETFELDARKVDTKFEDGL--- 323
Query: 405 CDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
D +L+DAPCSGLG+L R +RY KT + L E + +L
Sbjct: 324 FDSILVDAPCSGLGLL----------RRKPEIRYDKTIADINRLSEIQLQIL 365
>gi|366053068|ref|ZP_09450790.1| 16S rRNA methyltransferase B [Lactobacillus suebicus KCTC 3549]
Length = 451
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 102/350 (29%), Positives = 171/350 (48%), Gaps = 38/350 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D D RL+T+IV G I+ R L++ + +K S ++ LLL + Y+ LD
Sbjct: 43 LSDADRRLLTNIVYGVIQHRITLEYWLAPFIKGKKLESWVQVLLL----MSLYQYKYLDK 98
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+ DE++++AK+ PG LV +L ++ +L+ Q L+T
Sbjct: 99 VPEWAITDESIKIAKIKGHPGIRKLVTAVLHNILR---QGVRSFDQLQD----QTTRLST 151
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
YS P W++ G + +++ N S+R + ++ + V
Sbjct: 152 EYSVPSWLIDELASQYGDSKTHEILKKINQPAHQSIRVKQSADTEQVIKSLEDDGFSVKR 211
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ + + +G ++ ++ L ++G +QDESA L V + PG ++D CAAPG
Sbjct: 212 ST---VTSYALIISG-KSAAESPLFRDGTITIQDESAMLAVDSMKINPGDQVLDACAAPG 267
Query: 346 GKTLYMASCL--SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR----TFAD 399
GKT+ +A L + G V A+DI++ +++++ + AK NSVI I D R FAD
Sbjct: 268 GKTIQIAEHLDINNGGKVTALDIHQHKIKLIKDNAKRMHTNSVIDAIQLDARKVSEKFAD 327
Query: 400 NSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKT---SFLMQ 446
S D++L+DAPCSG G++ R +RY KT SF +Q
Sbjct: 328 ES---FDRILVDAPCSGFGLI----------RRKPEIRYEKTLEDSFHLQ 364
>gi|406027058|ref|YP_006725890.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
buchneri CD034]
gi|405125547|gb|AFS00308.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
buchneri CD034]
Length = 443
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 111/352 (31%), Positives = 168/352 (47%), Gaps = 34/352 (9%)
Query: 111 DLRLVTDIVGGTIRWRRYLDH-LICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPP 168
D L T+IV G I+ R L++ L L EKT E + ++L Y++ LD +P
Sbjct: 42 DKGLFTNIVYGVIQHRLTLEYQLRPFLREPEKT----ETWVKELLYTAMYQLEYLDRVPK 97
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
A+ DE +++AK G V GIL ++ + +P L+ + R L+ YS
Sbjct: 98 RAIFDETIKIAKQMGHDGTRRFVTGILHQM------DRQGMPNLDDIQDEKTR-LSIEYS 150
Query: 229 HPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELS 288
P W+V + LG+ + ++ N P S+RAN K +++ DL+ L E S
Sbjct: 151 VPTWLVEMLDEQLGKPKTASILASLNKAPKQSVRANLAK-ISQKDLLADLAKDGYDAEPS 209
Query: 289 LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKT 348
E I + G +I + +GL +QDESA L V + P +++D C+APGGKT
Sbjct: 210 QVSSEGIIINDG--QIIHSDFFTDGLLTIQDESAMLPVESMQISPDDNVLDACSAPGGKT 267
Query: 349 LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR----TFADNSTVK 404
+AS L G V+A+DI+K +L+ + A V + T D R F D
Sbjct: 268 TQIASRLKA-GKVFALDIHKNKLKTVQRNATRLGVYKQVETFELDARKVDTKFEDGL--- 323
Query: 405 CDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
D +L+DAPCSGLG+L R +RY KT + L E + +L
Sbjct: 324 FDSILVDAPCSGLGLL----------RRKPEIRYDKTIADINRLSEIQLQIL 365
>gi|363891855|ref|ZP_09319030.1| ribosomal RNA small subunit methyltransferase B [Eubacteriaceae
bacterium CM2]
gi|361964850|gb|EHL17856.1| ribosomal RNA small subunit methyltransferase B [Eubacteriaceae
bacterium CM2]
Length = 436
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 95/323 (29%), Positives = 169/323 (52%), Gaps = 13/323 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F+ DLD +T IV G + YLD+ I + + FS + IL + F+EI
Sbjct: 30 FKNVDLDYEMRGFITYIVYGVLSNINYLDYFIK--KYSDIAFSKISKKAKLILEMAFFEI 87
Query: 162 VKLDMP-PYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPK-LEGND-RA 218
+ ++ YA V+ENV+L K A + VN +LRK D N++ K E +D +
Sbjct: 88 IFMNSSVNYASVNENVKLVK-KYDNRAKSFVNAVLRKFT--SDENNIKNAKNYEFSDIKE 144
Query: 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL 278
+ ++T YS ++ +R + +L++ + P+ +R N K T D ++
Sbjct: 145 DIKYISTRYSVSDYIAQRLLDNYKNKFTEELLMSMSDTPNIFIRGNRLK--TDID-DLKR 201
Query: 279 NLLKVPHELSLHLDEFIRVK-TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 337
NL K+ ++ + +E + V +++ + + + G +VQD ++ V + P+P +++
Sbjct: 202 NLQKLGNKFEIIDEENMIVSLKNFKDISKNDMYRNGFFSVQDYASMKAVLALSPEPFENV 261
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397
+D CAAPGGK+++MA + +G + ++DI+ +L++L E AK +N +I+T D +
Sbjct: 262 LDICAAPGGKSVFMAELMGNKGSITSLDISSKKLKLLEEQAKRLGIN-IIKTYVNDATIY 320
Query: 398 ADNSTVKCDKVLLDAPCSGLGVL 420
K DKVL D PCSG+G+L
Sbjct: 321 KSEYKNKFDKVLCDVPCSGIGIL 343
>gi|228922619|ref|ZP_04085919.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar huazhongensis BGSC 4BD1]
gi|228837048|gb|EEM82389.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar huazhongensis BGSC 4BD1]
Length = 368
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 89/272 (32%), Positives = 145/272 (53%), Gaps = 13/272 (4%)
Query: 153 ILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPK 211
+LR+ Y+++ LD +P A + E V +AK G +VNG+LR + +P
Sbjct: 1 MLRLSLYQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD 56
Query: 212 LEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR 271
E D + A+ T SHPVW+V+ WT G E A K+ N P + R N K VT
Sbjct: 57 -EIKDPVERLAITT--SHPVWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDK-VTV 112
Query: 272 ADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
+ + L + + D+ I+++ G NV K+G ++QDES+ LV ++P
Sbjct: 113 EEAIELLASEGIEAKRGDLSDDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEP 170
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
G +++D CAAPGGKT ++A L G G V ++D++ ++R++ + A+ + +V T
Sbjct: 171 NTGDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENV-ETKA 229
Query: 392 ADLRTFADN-STVKCDKVLLDAPCSGLGVLSK 422
D R ++ + DK+L+DAPCSG GV+ +
Sbjct: 230 LDARKVQEHFANETFDKILVDAPCSGFGVIRR 261
>gi|402815959|ref|ZP_10865551.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus
alvei DSM 29]
gi|402506999|gb|EJW17522.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus
alvei DSM 29]
Length = 465
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 98/317 (30%), Positives = 163/317 (51%), Gaps = 19/317 (5%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L T++V GTI+ +D + L ++ + ++P + +LR+ Y++ LD +P +
Sbjct: 50 DAGLATELVYGTIQRLNTIDGV--LEQKVQRGLAKLKPWMRNLLRMTAYQLHYLDRIPAH 107
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A ++E V +AK G NG+LR ++++ P G+D + +SH
Sbjct: 108 AAINEAVTIAKRRGGQSMGGFANGVLR--AIMREPQLWETPA--GSD--PVSRIVWEHSH 161
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL---NLLKVPHE 286
P W+V W K G+EE + NN P S R N+ + R L++ + L +P
Sbjct: 162 PAWLVSNWVKAYGEEETAAMCESNNRPPHGSARVNALR-TNREKLLVDMRAEGLNVMPSS 220
Query: 287 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 346
LS + I V G N+ + + G +VQDES+ LVV + P+ G ++DCCAAPGG
Sbjct: 221 LS---KDGI-VAEGAGNLALSQWYRNGELSVQDESSMLVVEALRPEAGMRVLDCCAAPGG 276
Query: 347 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC- 405
KT ++A + +G V A D++ ++ ++ + A+ + SV T++ D V
Sbjct: 277 KTTHIAERMGNKGEVVANDVHAHKVALIADQAERLGLTSVA-TMNVDASILGRELPVGSF 335
Query: 406 DKVLLDAPCSGLGVLSK 422
D VLLDAPC+G GV+ +
Sbjct: 336 DAVLLDAPCTGFGVIRR 352
>gi|403745318|ref|ZP_10954256.1| sun protein [Alicyclobacillus hesperidum URH17-3-68]
gi|403121546|gb|EJY55839.1| sun protein [Alicyclobacillus hesperidum URH17-3-68]
Length = 449
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 100/323 (30%), Positives = 171/323 (52%), Gaps = 21/323 (6%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
++L DRD L T+I GT+R + +D+L L + + +++E +L ILR+ Y++ L
Sbjct: 34 RELSDRDKALATEIAYGTVRRQLTIDYL--LAPYVRRGLAALEVEILTILRMSVYQLSWL 91
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS----LPLPKLEGNDRAQ 219
+P YAV + V +AK + P + + VN +LR L+D + + + + +D AQ
Sbjct: 92 SRLPAYAVTSDAVDMAK-RVNPRSASFVNAVLRSY--LRDGTDWESRIHVRRTDRDDIAQ 148
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANS-RKGVTRADLVMQL 278
L+ ++S+P WMV R G+E A ++ N + ++R N R V +
Sbjct: 149 ---LSLLHSYPRWMVARLVAAYGRERAEAILAAGNRPGATAVRVNPLRASVESVASALTA 205
Query: 279 NLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 338
+ +L+ D +R+ TG ++ + L G VQDE A L+ ++ P+PG ++
Sbjct: 206 QGVGEIERGALY-DGALRI-TGAIDIERLDLYHHGSLTVQDEGAMLIAPLLRPEPGMRVL 263
Query: 339 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLR-ILNETAKLHQVNSVIRTIHADLRTF 397
D CAAPGGKT +A + G++ A D+ +++ I++ ++LH + +R D R
Sbjct: 264 DMCAAPGGKTTQIAELMRDTGVIDAYDVYISKIQTIVDACSRLHLTS--VRARLGDGRDV 321
Query: 398 ADNSTVKCDKVLLDAPCSGLGVL 420
+ N D VL+DAPCSGLGV+
Sbjct: 322 SGNP--PYDAVLVDAPCSGLGVM 342
>gi|395242503|ref|ZP_10419500.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
pasteurii CRBIP 24.76]
gi|394480235|emb|CCI85740.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
pasteurii CRBIP 24.76]
Length = 440
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 106/324 (32%), Positives = 163/324 (50%), Gaps = 29/324 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D L T+IV GTI+ R +L++ + L + T + PLLL + Y+I+ LD
Sbjct: 37 LSQADQNLATNIVYGTIQHRIFLEYQLKDLIQTKLTEKHLMPLLL----MSAYQIIFLDK 92
Query: 166 MPPYAVVDENVRLAKV--ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
+P AV+DE +LAK + R +VNG+LR L + LP +D L
Sbjct: 93 VPARAVLDEANKLAKSYGSKRSNGYRIVNGVLRSLT----RRGVVLP----DDENSIEYL 144
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
+ S P W+V + K G+ A + N S+R +S + + QL L
Sbjct: 145 SVKESMPQWLVEYFVKEWGRPRAQAMFASFNETAKNSIRVSSL--ADQEQVFTQLTQLGY 202
Query: 284 -PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
P + L I G VI+ L K G +QDE+AGLVV D + + ++D C+
Sbjct: 203 EPVKSDLSPSNLILKHGG---VIKEDLFKNGDITIQDEAAGLVVQAFDFKGDEQVLDACS 259
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FA 398
APGGKT+ +A L+ G V A+DI+K +L ++ + A+ +V ++ D R F+
Sbjct: 260 APGGKTVQIAEHLT-TGQVTALDIHKNKLNLVKKNAQRMKVADKLKVAAIDARASDSYFS 318
Query: 399 DNSTVKCDKVLLDAPCSGLGVLSK 422
D + DK+L+DAPCSGLG++ +
Sbjct: 319 DQ---RFDKILVDAPCSGLGLMRR 339
>gi|300854445|ref|YP_003779429.1| rRNA subunit cytosine-methyltransferase [Clostridium ljungdahlii
DSM 13528]
gi|300434560|gb|ADK14327.1| predicted rRNA subunit cytosine-methyltransferase [Clostridium
ljungdahlii DSM 13528]
Length = 443
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 165/315 (52%), Gaps = 23/315 (7%)
Query: 114 LVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPL---LLQILRIGFYEIVKLD-MPPY 169
LVT+IV GT+++ +D ++ D+ SS++ + ++ ILRI Y++ LD +P +
Sbjct: 42 LVTEIVYGTLKYMYTIDTIL-----DDFIKSSLKKMNIDIVNILRISIYQLRYLDKIPEF 96
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
AVV+E V L+K + + LVNG+LR + KDN E D + L YS
Sbjct: 97 AVVNEAVELSKKKSKGLSK-LVNGVLRNYLRNKDN-----LHCEHKDN-KIDNLCFKYSF 149
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSL 289
P WM + G+ ++ N P ++R N K ++ + LLK +++
Sbjct: 150 PRWMTLLFIHQYGEAVGESILQSLNYIPKVTVRVNGLKIDYKS---VWDELLKNGYDIQK 206
Query: 290 H--LDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 347
E + + G N+ + L K+G VQDESA LV +VDP+ +++D C+APGGK
Sbjct: 207 GKICKEAVVINRG-SNIEENPLFKKGYITVQDESAMLVAHIVDPEENMTVLDMCSAPGGK 265
Query: 348 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 407
+ +MA + G++YA D+++ +LR + E A + + I+ D + + D+
Sbjct: 266 SCHMAELMKNTGVIYAYDLHENKLRFVEENANRMDIKN-IKCNKLDAEKYVEQFEATADR 324
Query: 408 VLLDAPCSGLGVLSK 422
VL+D PCSGLG++ K
Sbjct: 325 VLIDVPCSGLGIVRK 339
>gi|341582142|ref|YP_004762634.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus sp. 4557]
gi|340809800|gb|AEK72957.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus sp. 4557]
Length = 451
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 90/301 (29%), Positives = 152/301 (50%), Gaps = 22/301 (7%)
Query: 124 RWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVAL 183
+WR +D +I + + ++P + +LRIG +EI +PP D +R+ K
Sbjct: 59 KWRAKIDFIINSVLKG-SSVEDLDPYIANLLRIGTFEIHFRKVPPAVATDSIIRVVKERF 117
Query: 184 RPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQ 243
VN ++ + K + L +L+ DR + L+ +SHP W V + LG
Sbjct: 118 DFSRAKFVNALMHSIE--KFDVESALKRLKERDRIEW--LSVRFSHPRWYVEYAVELLGY 173
Query: 244 EEAIKLMVWNNSDPSFSLRANSRK-GVTRADLVMQLN-----LLKVPHELSLHLDEFIRV 297
+EA++L++ NN + +RAN+ K V ++ N L VP L + +
Sbjct: 174 DEAVRLLLSNNRPQRYYVRANTLKVDVDSLRDYLEENGVRTALTPVPDVLKI-----LEY 228
Query: 298 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSG 357
KT V + +EG +QD ++ V V+ P+PG+ ++D AAPG KT + A+ +
Sbjct: 229 KTP---VTRLDWYREGKFVIQDLASAYVAHVLAPEPGERVLDLAAAPGSKTFHAAALMEN 285
Query: 358 QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGL 417
+G + A+D + RL + E KL + +V + +HAD ++F D + K DK++LDAPCS
Sbjct: 286 KGEIIAVDYSYDRLMRMKEKMKLLGIKNV-KLVHADGQSFKDKA--KFDKIILDAPCSSS 342
Query: 418 G 418
G
Sbjct: 343 G 343
>gi|384134997|ref|YP_005517711.1| sun protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius
Tc-4-1]
gi|339289082|gb|AEJ43192.1| sun protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius
Tc-4-1]
Length = 450
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 103/323 (31%), Positives = 166/323 (51%), Gaps = 26/323 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D+RD L T+I GT+R + LD L+ L + + ++P + ILR+ Y++ LD
Sbjct: 35 VDERDRALATEIAYGTLRRQITLDRLLSPLVR--RPLAKLDPEVRVILRMSAYQMTWLDR 92
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLV-LLKDNNSLPLPKLEGNDRAQARALA 224
+P YA ++ V LAK RP A VN +LR+ ++ SL L G + +
Sbjct: 93 VPAYAAANDAVELAK-RHRPQASGFVNAVLRQYAERAQEWESLLKKALAGAKDVER--WS 149
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL---NLL 281
+YS P W+V R G + + + N SLRAN R +R + V +L +
Sbjct: 150 VMYSVPAWIVERLVADHGADRVLAALASMNEPAPMSLRAN-RLRESREETVARLAQEGAM 208
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
VP L+ ++ +RV+ G +V + ++G +QDE A LV ++ +PG +VD C
Sbjct: 209 AVPAALA---EDGLRVR-GQVDVTRLRAYQDGYVTLQDEGAMLVAPLLRSEPGMRVVDLC 264
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401
AAPGGKT ++A + +G + A D+ ++R + + A+ +R+IH L D
Sbjct: 265 AAPGGKTTHLAELMGDRGEIDAYDVTVAKVRAVRQQAE----RLGLRSIHPRL---GDGR 317
Query: 402 TVK----CDKVLLDAPCSGLGVL 420
V+ D L+DAPC+GLGV+
Sbjct: 318 QVEPEEPYDAALVDAPCTGLGVM 340
>gi|22297753|ref|NP_681000.1| RNA-binding protein [Thermosynechococcus elongatus BP-1]
gi|22293930|dbj|BAC07762.1| RNA-binding protein [Thermosynechococcus elongatus BP-1]
Length = 442
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 105/324 (32%), Positives = 151/324 (46%), Gaps = 27/324 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQ-ILRIGFYEIVKLD 165
L D LVT++V GTIR +R LD LI C + PL +Q +LR+G Y++ LD
Sbjct: 35 LHGSDRTLVTELVYGTIRQQRTLDTLIQGFC------RQLPPLPVQLVLRLGLYQLRYLD 88
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNN------SLPLPKLEGNDRA 218
+P +A V +V L K G LVNG+LR+ + LPL
Sbjct: 89 RIPAHAAVHSSVELVKQIGLEGFAKLVNGVLRRYSRCTTDPLEAFIAHLPL--------- 139
Query: 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL 278
L YS P ++ W + L +E L W N P LR N + +T L+
Sbjct: 140 -VSQLGCRYSFPDELIASWLERLPLQECTALCQWFNQPPRLDLRLNPLR-ITADQLIADF 197
Query: 279 NLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 338
+ L + + + Q++ + G +VQD +A V ++DPQPG+ ++
Sbjct: 198 ETAGYGLQPIPPLPQGLVLSHCGQSMQELPGYAAGHWSVQDRAAQWVSHLLDPQPGEVVI 257
Query: 339 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398
D CAAPGGKT ++A + QG V A D + RLR L + + S+ IH A
Sbjct: 258 DACAAPGGKTTHIAELMEDQGRVIACDRSPHRLRKLAQNRDRLGLKSI--EIHILDSAAA 315
Query: 399 DNSTVKCDKVLLDAPCSGLGVLSK 422
+ D+VLLDAPCSG G L +
Sbjct: 316 GDFAAVGDRVLLDAPCSGTGTLHR 339
>gi|312867896|ref|ZP_07728101.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
parasanguinis F0405]
gi|311096651|gb|EFQ54890.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
parasanguinis F0405]
Length = 437
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 99/318 (31%), Positives = 165/318 (51%), Gaps = 23/318 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D+D VT++V GT+ + L+ + + D + ++P L +L + Y++V LD
Sbjct: 39 LSDKDRSFVTEVVYGTVARKITLEWYLAHVIEDR---TKLDPWLYYLLMMSLYQLVYLDR 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+V+E V++AK + G+ VN ILRKL L++ LP ++ R R +
Sbjct: 96 IPDHAIVNEAVQIAKCR-KEGSEKFVNAILRKL--LREG----LPAVDTIKRKNKR-YSV 147
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
YS PVW+V+ + G+E A + SL ++ + DL + L ++
Sbjct: 148 EYSLPVWLVKALIEEYGEERACDIFK--------SLYQRNKSSIRVIDLDEKEELAQLLE 199
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
S L VK + L KEG +QDES+ LV +D Q + ++D CAAPG
Sbjct: 200 ATSSLLASSALVKEQ-GHFAGHSLFKEGRITIQDESSQLVAPALDLQGDEWVLDACAAPG 258
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHADLRTFADNSTVK 404
GKT ++AS L+ G V A+D+ +L+++ E A +LH + ++ + F
Sbjct: 259 GKTTHLASYLT-TGKVTALDLYDHKLKLIQENANRLHVADKILTKKLDATKVFETFGPDA 317
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG+G++ +
Sbjct: 318 FDKILVDAPCSGIGLIRR 335
>gi|150016032|ref|YP_001308286.1| sun protein [Clostridium beijerinckii NCIMB 8052]
gi|149902497|gb|ABR33330.1| sun protein [Clostridium beijerinckii NCIMB 8052]
Length = 439
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 105/336 (31%), Positives = 166/336 (49%), Gaps = 20/336 (5%)
Query: 91 NEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP 148
NE Y L +L D+D L+T+IV G +R ++ LD +I D K M
Sbjct: 16 NEGAYSNIVLAKELNEAELSDKDKALLTEIVYGVLRRKKTLDIIISNFVKDLKL---MNK 72
Query: 149 LLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSL 207
+L ILR+ Y++ LD +P YA +E V AK + LVNGILR D+ +
Sbjct: 73 DILNILRVAIYQMNFLDKIPSYAACNEAVEEAK-EISENDSKLVNGILRNFTKNPDDIEV 131
Query: 208 PLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK 267
K++ A +S WM+R K G+ + K+M NS P S+R N K
Sbjct: 132 VGNKID--------EYAYKFSFEPWMIRLLIKQYGENVSKKIMSGLNSIPQVSVRVNELK 183
Query: 268 GVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVA 327
++ +L L+ E + E I +K G +++ L +EG VQDESA ++
Sbjct: 184 A-DYDEVFEKLEELEYEVEEGVICPEAICIKGG-KSIENNPLFQEGKITVQDESAMIIAP 241
Query: 328 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSV 386
+++ + G ++ D C+APGGKT ++A L G V A D+++ +L ++ E +L N
Sbjct: 242 LLELEEGMTVTDLCSAPGGKTTHIAEMLQNTGKVLAYDLHESKLGLIKENCERLGITNVE 301
Query: 387 IRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
+ T +D + D++L+D PCSGLG++ K
Sbjct: 302 VNT--SDATKLNPDLIASSDRILIDVPCSGLGIIRK 335
>gi|313124092|ref|YP_004034351.1| tRNA and rRNA cytosine-c5-methylase [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
gi|312280655|gb|ADQ61374.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
Length = 438
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 117/386 (30%), Positives = 183/386 (47%), Gaps = 38/386 (9%)
Query: 76 AFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICL 135
A A L+ +GS N + + L + RL T++V GTI+++ YL++ +
Sbjct: 9 ALATLMKVINQGSYSN----ISLNHALKAAKLPGEESRLATNLVYGTIQYQLYLEYQLKD 64
Query: 136 LCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGN--LVN 192
L ++PLLL + Y+I LD +P AV+DE +LAK RP + LVN
Sbjct: 65 LVKARLREPYIKPLLL----MSAYQIFFLDKVPNRAVLDEANKLAKAYGRPKSSGYRLVN 120
Query: 193 GILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVW 252
GIL L L+ LP ++ L+ S P+W+ + G+ A K+M
Sbjct: 121 GILHSL--LRRGEVLP-------EKDAPDYLSVKCSMPLWLSDYFVANWGKSRAEKIMAS 171
Query: 253 NNSDPSFSLRANSRKGVTRADLVMQLNLLK-VPHELSLHLDEFIRVKTGLQNVIQAGLLK 311
NS +R ++ R +V L+ P E L + + G ++ K
Sbjct: 172 FNSKAKNEIRISALADEKR--VVRDLDRAHFAPQESPLASRSYALSRGG---IVMTDFFK 226
Query: 312 EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRL 371
+G VQDE+A LV D + + +D C+APGGKT+ +A L G V A+DI++ +L
Sbjct: 227 DGEVTVQDEAASLVAEAFDFKGNEQALDACSAPGGKTIQIAEQLP-DGQVTALDIHEKKL 285
Query: 372 RILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSGLGVLSKTCVGIGDW 430
R++ E A +V ++ D R + S + DK+L+DAPCSGLG+L
Sbjct: 286 RLVKENAARMRVADRVKVKALDARKAREYFSGQEFDKILIDAPCSGLGLL---------- 335
Query: 431 RIWKSLRYCKTSFLMQHLCETKYLLL 456
R +RY KT+ + HL E + +L
Sbjct: 336 RRKPEIRYTKTAEDISHLAEIQLDIL 361
>gi|392988387|ref|YP_006486980.1| Sun protein [Enterococcus hirae ATCC 9790]
gi|392335807|gb|AFM70089.1| Sun protein [Enterococcus hirae ATCC 9790]
Length = 452
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 103/366 (28%), Positives = 181/366 (49%), Gaps = 33/366 (9%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R ++ + L R+ GGA+++LL NEM DL+ +D+ L T++V
Sbjct: 13 RYMALITLERVNKGGAYSNLLL--------NEM--------INQGDLNQKDVGLFTELVY 56
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI + L+ + L K ++ + +L + Y++ LD +P +A+++E V +A
Sbjct: 57 GTISRQLLLEFYVAPLIAKAK---KVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIA 113
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
K+ PG G VNG+LR + P +E R L+ S P+W+ +R T
Sbjct: 114 KIKGNPGTGKFVNGVLR------NYQRQGKPDVEQIGDPIER-LSVKISLPIWLTKRLTD 166
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKT 299
+G EE KL + S R + RK R + L ++ S + +
Sbjct: 167 QIGYEETEKLGLSLYQPSHVSGRVDIRK-YPREQAIETLQAEEISATASKLSPYGVIAEK 225
Query: 300 GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ- 358
G ++ + L +G+ +QDES+ LV + +P ++D CAAPGGKT ++A+ L
Sbjct: 226 G--HLASSSLFHDGVMTIQDESSMLVAPAMQIEPEHHVLDACAAPGGKTTHIATFLDPTC 283
Query: 359 -GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAPCSG 416
G V A+D+++ +++++ E A+ V + + D R + + + D++L+DAPCSG
Sbjct: 284 GGEVTALDVHEHKVKLIEENAERLGVFTTVYAQKMDAREVKEEFSAETFDRILVDAPCSG 343
Query: 417 LGVLSK 422
LG+L +
Sbjct: 344 LGLLRR 349
>gi|238854793|ref|ZP_04645123.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii 269-3]
gi|260664024|ref|ZP_05864877.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii SJ-7A-US]
gi|238832583|gb|EEQ24890.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii 269-3]
gi|260561910|gb|EEX27879.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii SJ-7A-US]
Length = 437
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 103/321 (32%), Positives = 165/321 (51%), Gaps = 22/321 (6%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L +D VT +V GTI+++ +L++ + L + ++PLLL + Y+++ L+
Sbjct: 35 NLSQKDQAFVTQLVYGTIQYQLFLEYQLKDLLRTKLKEDYLKPLLL----MSVYQLIFLN 90
Query: 166 -MPPYAVVDENVRLAK-VALRPGAG-NLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
+P AV+DE +LAK + +G LVNGILR L+ LP PK
Sbjct: 91 RVPNRAVLDEANKLAKDFGKKNSSGFRLVNGILRSF--LRRGQVLPSPK------DPVHF 142
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
L+ S P W+V+ + K G + KL++ N S+R KG+ + +V L
Sbjct: 143 LSIKESMPEWLVQYFVKNWGLKRTEKLLISLNERAENSIRV--AKGLDHSKIVNSLQKQG 200
Query: 283 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
S D V +++ K G +QDE+A LVV D + ++D CA
Sbjct: 201 FSVNESTLADNCFIVD---HSIVNTNEFKSGQITIQDEAASLVVDCFDLRENDHVLDTCA 257
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S 401
APGGKT +A LS G V ++DI+K +L ++ + A+ V+ + T+ D R A++ S
Sbjct: 258 APGGKTTQLAENLS-HGKVTSLDIHKKKLNLIKKYAQRMHVDDRVETLALDARKAAEHFS 316
Query: 402 TVKCDKVLLDAPCSGLGVLSK 422
K +K+L+DAPCSGLG+L +
Sbjct: 317 DTKFNKILVDAPCSGLGLLRR 337
>gi|291530595|emb|CBK96180.1| ribosomal RNA small subunit methyltransferase RsmB [Eubacterium
siraeum 70/3]
Length = 439
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/323 (27%), Positives = 160/323 (49%), Gaps = 14/323 (4%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYE 160
F D D RD + G + R LD+LI E F ++ +++ILR+GFY+
Sbjct: 29 AFTQNDADRRDKAFSAALFYGVLERRMTLDYLIRYYSGIE--FDKIKTAVVEILRMGFYQ 86
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
++ ++ +P A V+E+V L A VN ILR L++ + L G +
Sbjct: 87 LLFMNSVPDSAAVNESVALCDYCNSTKAKGYVNAILR--TFLRNEKQIDYGNLTGEAK-- 142
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
L+ YS P W+V++W LG++ A++++ P R N+ + D++ +L
Sbjct: 143 ---LSIEYSCPKWLVKKWNSELGEQRAMQMINSCFGRPPIYARVNTVRYAVD-DVIGELE 198
Query: 280 LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 339
+ + +D I + + + Q+ K+G+ +QD S+ + + P +++VD
Sbjct: 199 SEGISAAKNSLIDACIEL-ANTKGIEQSSAYKKGMFHIQDISSQICCKIAAPMFNETVVD 257
Query: 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 399
C+APGGKT A ++ +G +Y+ D+ G++ ++ TAK + ++I D F +
Sbjct: 258 LCSAPGGKTFTCAEIMNDRGRIYSYDLYDGKVSVIANTAKRLGL-TIITAAENDATKF-N 315
Query: 400 NSTVKCDKVLLDAPCSGLGVLSK 422
K D+V+ D PCSGLGV+ +
Sbjct: 316 PDIPKADRVVCDVPCSGLGVIRR 338
>gi|390960865|ref|YP_006424699.1| hypothetical protein containing sun-domain [Thermococcus sp. CL1]
gi|390519173|gb|AFL94905.1| hypothetical protein containing sun-domain [Thermococcus sp. CL1]
Length = 451
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/296 (29%), Positives = 149/296 (50%), Gaps = 12/296 (4%)
Query: 124 RWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVAL 183
+WR +D +I + K ++P L +LRIG +EI +PP D +R+ K
Sbjct: 59 KWRAKIDFIINSVLKGSKV-EDLDPYLANLLRIGTFEIHFRKVPPAIATDSIIRVVKERF 117
Query: 184 RPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQ 243
VN ++ + + +L KL+ DR + L+ +SHP W V + LG
Sbjct: 118 DFSRAKFVNALMHSIEKFDVDKALK--KLKERDRIEW--LSIRFSHPRWYVEYAIELLGY 173
Query: 244 EEAIKLMVWNNSDPSFSLRANSRK-GVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQ 302
+EA++L++ NN + +RAN K V ++ N ++ + + + KT
Sbjct: 174 DEAVRLLLSNNRPQRYYVRANLLKTDVDSLRDYLEENGVRTARTPVPDVLKVLDYKTP-- 231
Query: 303 NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVY 362
V + +EG +QD ++ V V+ P+PG+ ++D AAPG KT + A+ + +G +
Sbjct: 232 -VTRLNWYREGKFVIQDLASAYVAHVLAPEPGERVLDLAAAPGSKTFHAAALMENRGEIV 290
Query: 363 AIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLG 418
A+D + RL + E KL + +V + +HAD ++F D K DK++LDAPCS G
Sbjct: 291 AVDYSYDRLMRMREKMKLLGIKNV-KLVHADGQSFKDRE--KFDKIILDAPCSSSG 343
>gi|212225119|ref|YP_002308355.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1]
gi|212010076|gb|ACJ17458.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1]
Length = 450
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/303 (29%), Positives = 152/303 (50%), Gaps = 26/303 (8%)
Query: 124 RWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVAL 183
+WR +D +I + T ++P L +LRIG +EI +PP D +R+ K
Sbjct: 59 KWRAKIDFIINSVLKG-STVEDLDPYLANLLRIGTFEIHFRKVPPAIATDSIIRVVKGHF 117
Query: 184 RPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQ 243
VN ++ ++ K + L +L+ DR + L+ +SHP W V + G
Sbjct: 118 DFSRAKFVNALMHEIE--KFDVERALKRLKERDRIEW--LSVRFSHPRWYVEYAVELFGY 173
Query: 244 EEAIKLMVWNNSDPSFSLRANSRKGVTRADLV--------MQLNLLKVPHELSLHLDEFI 295
+EA++L++ NN + +RAN+ K T D + ++ L +P L + +
Sbjct: 174 DEAVRLLLSNNKAQRYYVRANTLK--TDVDSLRDYLEENGVRTALTPLPDVLKI-----L 226
Query: 296 RVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL 355
KT V + K+G +QD ++ V V+ P+PG+ ++D AAPG KT + A+ +
Sbjct: 227 EYKTP---VTRLNWYKQGKFVIQDLASAYVAHVLAPEPGERVLDLAAAPGSKTFHAAALM 283
Query: 356 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCS 415
+G + A+D + RL + E KL + +V + +HAD ++F D K DK++LDAPCS
Sbjct: 284 ENKGEIVAVDYSYDRLMRMKEKMKLLGIKNV-KLVHADGQSFRDKE--KFDKIILDAPCS 340
Query: 416 GLG 418
G
Sbjct: 341 SSG 343
>gi|20094975|ref|NP_614822.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
gi|19888229|gb|AAM02752.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
Length = 450
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 99/301 (32%), Positives = 148/301 (49%), Gaps = 15/301 (4%)
Query: 126 RRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRP 185
R LD +I + + ++ + RI E+V D P V D L + P
Sbjct: 61 RGLLDEVIEDVLEITDDVTELDTWVRNAARIAVNEVVFEDGDPDEVADVLHGLVRRLANP 120
Query: 186 GAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQ-E 244
GA +V + LKD P P+ E DR L Y HP W++ RW + G +
Sbjct: 121 GAAAIVKAFT---LDLKDYEP-PEPEDE-LDR-----LKWEYYHPRWLIERWMEMFGDPD 170
Query: 245 EAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL-LKVPHELSLHLDEFIRVKTGLQN 303
E + L+ NN P ++R N+ K V +L +L +V E LDE +++ GL
Sbjct: 171 EVVALLEANNRRPPLTIRVNTLK-VDPEELAERLQRKYRVTVEPGRFLDEILKIPEGLP- 228
Query: 304 VIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYA 363
+ + +EGL +QDE+A L AV++P+PG+ +VD CAAPGGKT +MA + G+G + A
Sbjct: 229 IGEMPEWEEGLFVIQDEAAALASAVLNPKPGEVVVDLCAAPGGKTTHMAQLMGGEGKIVA 288
Query: 364 IDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK-CDKVLLDAPCSGLGVLSK 422
ID+++ R+ L E A+ V I T D R + + D VL+D PCS G + K
Sbjct: 289 IDVDEVRMERLREIAERMGVLDCIETHLMDGREAPEKLGREFADAVLVDPPCSADGTIPK 348
Query: 423 T 423
Sbjct: 349 N 349
>gi|379795582|ref|YP_005325580.1| hypothetical protein SAMSHR1132_10580 [Staphylococcus aureus subsp.
aureus MSHR1132]
gi|356872572|emb|CCE58911.1| Bacterial Fmu (Sun) [Staphylococcus aureus subsp. aureus MSHR1132]
Length = 435
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 99/323 (30%), Positives = 166/323 (51%), Gaps = 34/323 (10%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
DL+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 DLNAMDKGLFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLV--LLKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGFHNGNVVNGILRTIMRSELPDYNEITDPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQ 277
+ +A YS P W+V W + G EE ++ PS ++RAN +TRA D++ +
Sbjct: 139 KRMAIEYSMPKWIVDHWVTHYGLEETESILQSFLKSPSTTVRAN----LTRASLEDIIAK 194
Query: 278 LNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 337
L E+ +D + Q VI + K+G ++QD+S+ V V++ +
Sbjct: 195 LQ--NEGFEVKKDVDLPYCLHISGQPVIHSRSFKDGFVSIQDKSSMFVAHVMNVDRHDDV 252
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397
+D C+APGGK ++A L +G V A DI++ ++ ++N K ++ ++ H + +
Sbjct: 253 LDACSAPGGKACHIAEVLMPEGHVDASDIHEHKIDLINFNIKKLRLTNISAFQHDATKPY 312
Query: 398 ADNSTVKCDKVLLDAPCSGLGVL 420
DK+L+DAPCSGLGV+
Sbjct: 313 EQ----MYDKILVDAPCSGLGVM 331
>gi|402839079|ref|ZP_10887572.1| ribosomal RNA small subunit methyltransferase B [Eubacteriaceae
bacterium OBRC8]
gi|402270618|gb|EJU19876.1| ribosomal RNA small subunit methyltransferase B [Eubacteriaceae
bacterium OBRC8]
Length = 436
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 164/322 (50%), Gaps = 11/322 (3%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F+ DLD +T IV G + YLD+ I + + FS + IL + F+EI
Sbjct: 30 FKNVDLDYEMRGFITYIVYGVLSNINYLDYFIK--KYSDIAFSKISKKAKLILEMAFFEI 87
Query: 162 VKLDMP-PYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPK-LEGND-RA 218
+ ++ YA V+ENV+L K A + VN +LRK D N++ K E +D +
Sbjct: 88 IFMNSSVNYASVNENVKLVK-KYDNRAKSFVNAVLRKFT--SDENNIKNAKNYEFSDIKE 144
Query: 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL 278
+ ++T YS ++ +R + +L++ + P+ +R N R DL L
Sbjct: 145 DIKYISTRYSVSDYIAQRLLDNYKNKFTEELLMSMSDTPNIFIRGN-RLKTDIDDLKRSL 203
Query: 279 NLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 338
L E+ + + +K +++ + + + G +VQD ++ V + P+P ++++
Sbjct: 204 QKLGNKFEIIDEENMIVSLK-NFKDISKNDMYRNGFFSVQDYASMKAVLALSPEPFENVL 262
Query: 339 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398
D CAAPGGK+++MA + +G + ++DI+ +L++L E AK +N +I+T D +
Sbjct: 263 DICAAPGGKSVFMAELMGNKGSITSLDISSKKLKLLEEQAKRLGIN-IIKTYVNDATIYK 321
Query: 399 DNSTVKCDKVLLDAPCSGLGVL 420
K DKVL D PCSG+G+L
Sbjct: 322 SEYKNKFDKVLCDVPCSGIGIL 343
>gi|373458226|ref|ZP_09549993.1| sun protein [Caldithrix abyssi DSM 13497]
gi|371719890|gb|EHO41661.1| sun protein [Caldithrix abyssi DSM 13497]
Length = 450
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 103/326 (31%), Positives = 156/326 (47%), Gaps = 29/326 (8%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQ---ILRIGFYEIV 162
+L R+ R ++ G +R R YLD + L + LL++ +LR+ YE++
Sbjct: 38 ELSGRERRFFKNLTSGVVRHRLYLDWIGSQLYK-----GRYKKLLIKFKVLLRLALYELI 92
Query: 163 KLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
L +P +A ++E V L K L L+NG+LR + K+ P K+E +
Sbjct: 93 FLTAIPEHATLNEYVGLTKKKLNNFQAKLLNGLLRNYLRQKETLD-PAKKIED----PLK 147
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
L+ YS P W+++RW + G+ E L N P F + N++K ++ L
Sbjct: 148 RLSVQYSFPEWLIKRWIGFWGEAETEALCKKLNEPPDFDVHINTQK-ISPKKFKNLLKEK 206
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
KVP + +RVK +Q ++ ++G C +QDESA LVV + I+D C
Sbjct: 207 KVPFVEAPFDTTIVRVK-DVQPFLRERWFEKGYCVIQDESAALVVEQMALTEKSKILDMC 265
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRL-RILNETAKLHQVNSVIRTIHADLRTFAD- 399
AAPGGK + QG+V A DI+K RL R+ KL + L AD
Sbjct: 266 AAPGGKYAQLLKKRPSQGMVVAADIDKERLKRVKQNVQKL--------GLEGGLFVVADG 317
Query: 400 -NSTVK--CDKVLLDAPCSGLGVLSK 422
N K D +L+DAPC+GLGV+ K
Sbjct: 318 KNPPFKKVFDHILIDAPCTGLGVIRK 343
>gi|422844007|ref|ZP_16890717.1| RNA methyltransferase Sun [Lactobacillus delbrueckii subsp. lactis
DSM 20072]
gi|325685886|gb|EGD27952.1| RNA methyltransferase Sun [Lactobacillus delbrueckii subsp. lactis
DSM 20072]
Length = 438
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 110/349 (31%), Positives = 171/349 (48%), Gaps = 34/349 (9%)
Query: 113 RLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAV 171
RL T++V GTI+++ YL++ + L ++PLLL + Y+I LD +P AV
Sbjct: 42 RLATNLVYGTIQYQLYLEYQLKDLVKARLREPYIKPLLL----MSAYQIFFLDKVPNRAV 97
Query: 172 VDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
+DE +LAK RP + LVNGIL L L+ LP ++ L+ S
Sbjct: 98 LDEANKLAKAYGRPKSSGYRLVNGILHSL--LRRGEVLP-------EKDAPDYLSVKCSM 148
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK-VPHELS 288
P+W+ + G+ A K+M NS +R ++ R +V L+ P E
Sbjct: 149 PLWLSDYFVANWGKSRAEKIMASFNSKAKNEIRISALADEKR--VVRDLDRAHFAPQESP 206
Query: 289 LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKT 348
L + + G ++ K+G VQDE+A LV D + + +D C+APGGKT
Sbjct: 207 LASRSYALSRGG---IVMTDFFKDGEVTVQDEAASLVAEAFDFKGNEQALDACSAPGGKT 263
Query: 349 LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDK 407
+ +A L G V A+DI++ +LR++ E A +V ++ D R + S + DK
Sbjct: 264 IQIAEQLP-DGQVTALDIHEKKLRLVKENAARMRVADRVKVKTLDARKAREYFSGQEFDK 322
Query: 408 VLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
+L+DAPCSGLG+L R +RY KT+ + HL E + +L
Sbjct: 323 ILIDAPCSGLGLL----------RRKPEIRYTKTAEDISHLAEIQLDIL 361
>gi|397651760|ref|YP_006492341.1| nol1-nop2-sun family nucleolar protein II [Pyrococcus furiosus
COM1]
gi|393189351|gb|AFN04049.1| nol1-nop2-sun family nucleolar protein II [Pyrococcus furiosus
COM1]
Length = 433
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 151/296 (51%), Gaps = 12/296 (4%)
Query: 124 RWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVAL 183
+WR +D +I + K ++P L +LRIG +E+ + P D VR+ K
Sbjct: 42 KWRAKIDFIINSVLRGSKV-EDLDPYLANLLRIGVFEMKFKKINPAIATDSIVRVVKEKF 100
Query: 184 RPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQ 243
N ILR++ K N L +L+ DR + LA +SHP W V LG
Sbjct: 101 DLTRAKFANAILREVE--KFNVEKALKRLKEKDRIEW--LAVRFSHPRWYVEYVIDLLGY 156
Query: 244 EEAIKLMVWNNSDPSFSLRANSRKG-VTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQ 302
+EA++L++ N + +R NS K + + ++ N ++V + +D+ ++V +
Sbjct: 157 DEAVRLLLSNLKPQRYYVRINSLKADIEKVKKYLEENGVRVAY---TPVDDVLKVLEYEK 213
Query: 303 NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVY 362
+ + K+G +QD ++ V V+ P+PG+ ++D AAPG KT + A+ + +G +
Sbjct: 214 PITKLEGYKKGYFVIQDLASAYVAHVLSPEPGERVLDLAAAPGSKTFHAAALMENKGEIV 273
Query: 363 AIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLG 418
A+D + RL + E K V +V + ++AD +++ D K DK++LDAPCS G
Sbjct: 274 AVDYSYERLVRMKERMKKLGVKNV-KLVYADGQSYIDKE--KFDKIILDAPCSSSG 326
>gi|224541737|ref|ZP_03682276.1| hypothetical protein CATMIT_00909 [Catenibacterium mitsuokai DSM
15897]
gi|224525341|gb|EEF94446.1| ribosomal RNA small subunit methyltransferase B [Catenibacterium
mitsuokai DSM 15897]
Length = 439
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 99/324 (30%), Positives = 161/324 (49%), Gaps = 33/324 (10%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
T+D + L+T +V GTI+ R YL++ L H +E +LL + Y+
Sbjct: 55 TQDFSPSERGLITTLVYGTIQNRLYLEY--QLEPHIHTRLKVVEKMLL---LMSLYQHFY 109
Query: 164 LDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
LD P YA+V+E V + K AG ++N IL K+ SL +D L
Sbjct: 110 LDTPDYAIVNEAVEIIKERRNKRAGGMINAILHSC--FKETRSL-------DDLDHDERL 160
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
+ SHP+WMV+ + G+E K++ +N P S R N+ K ++R + L K
Sbjct: 161 SISTSHPLWMVKMFNAQYGKETTEKILHADNEVPLKSGRMNTYK-MSREEF-----LKKY 214
Query: 284 PHELSLHLD-EFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
P +L + + +K G N+ KEGL +QDES+ +V +++P ++D C
Sbjct: 215 PEFTPGYLSPDSVLLKEG--NIAHTEAFKEGLVTIQDESSQMVARLLNPGEEDVVLDMCG 272
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH----ADLRTFA 398
APG KT ++ ++ +GL+ D+ + +++ + AK ++++ +H DL F
Sbjct: 273 APGSKTTHLGILMNNKGLIDVYDLYPHKAKLIEDNAKRLGLSNI--HVHTGDSTDLSLFD 330
Query: 399 DNSTVKCDKVLLDAPCSGLGVLSK 422
T K+LLD PCSGLGVLS+
Sbjct: 331 KQYT----KILLDGPCSGLGVLSR 350
>gi|337287877|ref|YP_004627349.1| sun protein [Thermodesulfobacterium sp. OPB45]
gi|334901615|gb|AEH22421.1| sun protein [Thermodesulfobacterium geofontis OPF15]
Length = 460
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 154/318 (48%), Gaps = 13/318 (4%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMP 167
D+RD LV ++V G +R Y+D +I + M+ + ILR+ Y+I+ +P
Sbjct: 42 DERDRALVGELVNGVVRHLYYIDFVISRVSLH--PLEKMDVEVRNILRLSTYQIIYTRIP 99
Query: 168 PYAVVDENVRLAKVALR-PGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI 226
+ E +++ R LVN IL K+ KDN LP P D L+
Sbjct: 100 ERVAIAEALKILSHRKRGDWIKGLVNAILHKIAENKDN--LPQPP----DFNPVFYLSIK 153
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHE 286
YS P WMV+RW G EE KL++ +N P +R N K V+R + + L +VP
Sbjct: 154 YSFPEWMVKRWLDRFGFEETEKLLLASNERPPLVIRVNILK-VSRDNFLTFLQKEEVPSA 212
Query: 287 LSLHLDEFIRVKTGLQ-NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ + G + V + G +VQD ++ LV +++P+PG+ I+D CA G
Sbjct: 213 KACPYSPAGIILDGFRGKVTELKAYHFGWISVQDSASQLVTFLLNPKPGEKILDACAGVG 272
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD-LRTFADNSTVK 404
GKT ++A + +G+++A D+ RL L E + + + D + +
Sbjct: 273 GKTTHIAELMQNRGIIWAFDLYPWRLEKLKENFQRLGLKEP-KVFQGDVVEELPKLNAPL 331
Query: 405 CDKVLLDAPCSGLGVLSK 422
D++L+DAPC+G GV+ K
Sbjct: 332 FDRILIDAPCTGTGVIRK 349
>gi|418613993|ref|ZP_13176983.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU118]
gi|374821862|gb|EHR85903.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU118]
Length = 435
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 99/325 (30%), Positives = 169/325 (52%), Gaps = 34/325 (10%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEI 161
T +++ D L T++V GT++ + LD+L+ K F + ++ + Q+L + Y+
Sbjct: 33 TNNINTVDKNLFTELVYGTLKRKYTLDYLL-------KPFIKTKIKSWVRQLLWMSLYQY 85
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD +P +A++ E V +AK GN+VNGILR ++ + LP E D +
Sbjct: 86 LYLDKIPNHAIIHEAVDIAKKRGGYHTGNIVNGILRTVMRTE------LPSFEDIDDTKK 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN-SRKGVTRADLVMQLN 279
R +A YS P W+V W + G E+ K+ + ++RAN SR + ++
Sbjct: 140 R-IAIQYSLPKWIVDHWVTHFGIEKTEKIAQSFLEPVATTVRANISRGSIDSIISKLEQE 198
Query: 280 LLKVPHE----LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
+V + LH+ +GL V+ + KEG ++QD+S+ +V V++
Sbjct: 199 GYQVKKDDMLPFCLHI-------SGLP-VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDD 250
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
++D C+APGGK +MA LS +G V A DI++ ++ ++ + K ++N+ I+ D
Sbjct: 251 KVLDACSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQNIKKLKLNN-IKAFQHDAT 309
Query: 396 TFADNSTVKCDKVLLDAPCSGLGVL 420
D DK+L+DAPCSGLGVL
Sbjct: 310 EVYDKM---YDKILVDAPCSGLGVL 331
>gi|418633997|ref|ZP_13196395.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU129]
gi|420177392|ref|ZP_14683728.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM057]
gi|420179235|ref|ZP_14685530.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM053]
gi|420189611|ref|ZP_14695579.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM037]
gi|420204139|ref|ZP_14709699.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM015]
gi|374837989|gb|EHS01546.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU129]
gi|394247776|gb|EJD93018.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM057]
gi|394254041|gb|EJD99023.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM053]
gi|394260946|gb|EJE05748.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM037]
gi|394274153|gb|EJE18578.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM015]
Length = 435
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 99/325 (30%), Positives = 169/325 (52%), Gaps = 34/325 (10%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEI 161
T +++ D L T++V GT++ + LD+L+ K F + ++ + Q+L + Y+
Sbjct: 33 TNNINTVDKNLFTELVYGTLKRKYTLDYLL-------KPFIKTKIKSWVRQLLWMSLYQY 85
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD +P +A++ E V +AK GN+VNGILR ++ + LP E D +
Sbjct: 86 LYLDKIPNHAIIHEAVDIAKKRGGYHTGNIVNGILRTVMRTE------LPSFEDIDDTKK 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN-SRKGVTRADLVMQLN 279
R +A YS P W+V W + G E+ K+ + ++RAN SR + ++
Sbjct: 140 R-IAIQYSLPKWIVDHWVTHFGIEKTEKIAQSFLEPVATTVRANISRGSIDSIISKLEQE 198
Query: 280 LLKVPHE----LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
+V + LH+ +GL V+ + KEG ++QD+S+ +V V++
Sbjct: 199 GYQVKKDDMLPFCLHI-------SGLP-VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDD 250
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
++D C+APGGK +MA LS +G V A DI++ ++ ++ + K ++N+ I+ D
Sbjct: 251 KVLDACSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQNIKKLKLNN-IKAFQHDAT 309
Query: 396 TFADNSTVKCDKVLLDAPCSGLGVL 420
D DK+L+DAPCSGLGVL
Sbjct: 310 EVYDKM---YDKILVDAPCSGLGVL 331
>gi|302035777|ref|YP_003796099.1| ribosomal RNA small subunit methyltransferase B [Candidatus
Nitrospira defluvii]
gi|300603841|emb|CBK40173.1| Ribosomal RNA small subunit methyltransferase B [Candidatus
Nitrospira defluvii]
Length = 449
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 108/339 (31%), Positives = 163/339 (48%), Gaps = 38/339 (11%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD RD + ++V G +R+R LD + LL ++ + + L+ ILR+G Y+++ LD
Sbjct: 27 LDLRDRAFMVELVRGVLRYRATLDWRLGLL--SDRRITKLPTLVQTILRLGAYQLLYLDR 84
Query: 166 MPPYAVVDENVRLAKVALRP---GAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
+P A V+E+V++ K R VN +LR L+ P P A
Sbjct: 85 VPDSAAVNESVQMTKQQSRRLGRDWSGFVNAVLRALL------RSPEPAWPDAGSDPVVA 138
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
LA YS P W+V RW + LG E A L + P +LR N+ + +R+ L+ L +
Sbjct: 139 LAVRYSCPAWLVERWCRRLGAERAEVLCRASVEAPPLTLRVNTLR-TSRSALLADLAAAQ 197
Query: 283 V---PHELSLHLDEFIRVKTGLQ-----NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 334
V P +S + GLQ VI EG V+DE+ L+ ++D QPG
Sbjct: 198 VEANPTSVS---------EVGLQLSRSCAVIDLPGYAEGRFYVEDEAGQLIPLLLDVQPG 248
Query: 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 394
Q +D CAAPGGK ++A+ + QG + A+D RL ++ + V ++ + DL
Sbjct: 249 QRALDACAAPGGKATHLAALMENQGEIVAVDRVSSRLDLVMANCRRLGVK-ILTPLAGDL 307
Query: 395 RTFADNSTVK-------CDKVLLDAPCSGLGVLSKTCVG 426
R D++LLDAPCSGLGVL + G
Sbjct: 308 RALVGAEIASHPMLSRPFDRILLDAPCSGLGVLRRHPEG 346
>gi|386579362|ref|YP_006075767.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis JS14]
gi|386581426|ref|YP_006077830.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis SS12]
gi|386587657|ref|YP_006084058.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis A7]
gi|319757554|gb|ADV69496.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis JS14]
gi|353733572|gb|AER14582.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis SS12]
gi|354984818|gb|AER43716.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis A7]
Length = 436
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 104/325 (32%), Positives = 160/325 (49%), Gaps = 38/325 (11%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L +D L T++V GT+ + L+ + D + ++ + +L + Y++V LD
Sbjct: 39 LSAQDKGLATELVYGTVSRKITLEWYLAHFIEDRE---KLDTWVYYLLMLSLYQLVYLDK 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +AVV+E V +AK +PG VN ILRKL +SLP P + + + + L+
Sbjct: 96 LPTHAVVNEAVNIAK--RKPGTDKFVNAILRKL----SQDSLPKP---ADIKRKNKRLSV 146
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR--ADLVMQLNLLKV 283
YS PVW+V+ G E A K+ + S+R + V R +L Q + L
Sbjct: 147 QYSVPVWLVQTLIAEYGDERAEKIFQSLHDRNKASVRVTDGQQVERLAEELGAQHSQLSP 206
Query: 284 -----PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 338
PH D F KEGL +QDE++ LV +D Q + I+
Sbjct: 207 VGLVKPHGHFAGTDYF----------------KEGLITIQDETSQLVAPTLDIQGDEIIL 250
Query: 339 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL-RTF 397
D CAAPGGKT +MAS L+ G VYA+D+ +L ++ E A+ + I T D R
Sbjct: 251 DACAAPGGKTCHMASYLT-DGKVYALDLYDHKLNLIEENARRLGLADKIETKGLDASRVH 309
Query: 398 ADNSTVKCDKVLLDAPCSGLGVLSK 422
+ DK+L+DAPCSG+G++ +
Sbjct: 310 EEFGPDTFDKILVDAPCSGIGLIRR 334
>gi|406831139|ref|ZP_11090733.1| sun protein [Schlesneria paludicola DSM 18645]
Length = 477
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 106/350 (30%), Positives = 158/350 (45%), Gaps = 28/350 (8%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
FR L + L T++ G +R + LD ++ L + +E L ILR+G Y+I
Sbjct: 56 FRESALPASERGLATELACGVVRRQGTLDAILKTLV--ARPADQVEVSLWTILRLGVYQI 113
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDN--------NSLPL--- 209
V LD +P +A V E V L K A R VNG+LR L + +++P+
Sbjct: 114 VMLDGIPSHAAVHETVELCKRAGRMRWSGFVNGVLRGATRLATDQFQTTPSASAVPVSVD 173
Query: 210 -------PKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLR 262
P + LA +S P+W+ RW K EE ++ W NS R
Sbjct: 174 RHRILNKPVFFEPESDLPAYLAGAFSLPLWLTERWVKRFKPEELFRMGAWFNSPSPLMAR 233
Query: 263 ANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESA 322
N+ + + ++V + + + F V G V EG +QD SA
Sbjct: 234 PNTLRS-SYDEVVADFQAAGITIQPLEGTESF--VIEGTTRVEALPGFVEGKFVIQDFSA 290
Query: 323 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ 382
+ PQPGQ + D CAAPGGKT ++A+ + +G + A DI RL I++E A+
Sbjct: 291 SRAAVRLAPQPGQRVWDVCAAPGGKTCHLAALMKNEGHILATDIRSDRLEIVHENAQ-RL 349
Query: 383 VNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWRI 432
++IR+ D + F T D +L+D PCS GVL+K WRI
Sbjct: 350 GATIIRSQLVDEQGF-RLPTGPFDAILVDVPCSNTGVLAKRPE--ARWRI 396
>gi|339634054|ref|YP_004725695.1| 16S rRNA methyltransferase B [Weissella koreensis KACC 15510]
gi|420161397|ref|ZP_14668162.1| RNA methyltransferase [Weissella koreensis KCTC 3621]
gi|420161534|ref|ZP_14668298.1| RNA methyltransferase [Weissella koreensis KCTC 3621]
gi|338853850|gb|AEJ23016.1| 16S rRNA methyltransferase B [Weissella koreensis KACC 15510]
gi|394745072|gb|EJF33968.1| RNA methyltransferase [Weissella koreensis KCTC 3621]
gi|394745374|gb|EJF34258.1| RNA methyltransferase [Weissella koreensis KCTC 3621]
Length = 452
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 112/377 (29%), Positives = 187/377 (49%), Gaps = 48/377 (12%)
Query: 56 EVSPHRAVSAVRLMRIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRL 114
E S RA+S L R++ GA+++L LN+ K S L++RD+ L
Sbjct: 13 EQSNARALSVRVLERVK-DGAYSNLQLNQLAKAS-----------------KLEERDIHL 54
Query: 115 VTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVKLD-MPPYAV 171
+T IV G I+ R L++ + K F +++P + ++L I Y++ LD +P +A+
Sbjct: 55 LTTIVYGVIQHRLTLEYWL-------KPFLRGNVDPFVKELLMISVYQMQYLDKIPQHAI 107
Query: 172 VDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPV 231
DE +++AK G V G+L L + LP + Q A++ PV
Sbjct: 108 FDEAIQIAKRRGHDGIRKYVTGVLHSL----ERQGLPEFTTIKDPIEQLSIEASL---PV 160
Query: 232 WMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHL 291
W++++ +G E+ +K+ N P+ S R N R T+ + L E S
Sbjct: 161 WLLKQLESEVGHEKMVKIARSINDAPAQSARIN-RAVTTQEQVTTVLEAEGFEVEASKVT 219
Query: 292 DEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYM 351
E +R+K G +V + ++GL +QDESA L+V ++ P ++D AAPGGKT +
Sbjct: 220 PEALRIKHG--HVASSKAFEDGLLTLQDESAMLMVPNLNLTPSMKVLDAAAAPGGKTTQI 277
Query: 352 ASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR----TFADNSTVKC 405
AS L + G+V A+DI+ +++++ E A+ V+ + D R F D +
Sbjct: 278 ASYLDPKQGGIVEALDIHPHKIKLIEENAQRLHVSDQVHAQELDARKVDEQFDDET---F 334
Query: 406 DKVLLDAPCSGLGVLSK 422
D +L+DAPCSG G+L +
Sbjct: 335 DAILVDAPCSGFGLLRR 351
>gi|373857268|ref|ZP_09600010.1| sun protein [Bacillus sp. 1NLA3E]
gi|372452918|gb|EHP26387.1| sun protein [Bacillus sp. 1NLA3E]
Length = 449
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 100/323 (30%), Positives = 170/323 (52%), Gaps = 26/323 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D D+ L+T++ GT++ + LD+ + D K ++ ++ +LR+ Y++V LD
Sbjct: 39 VDRIDVGLLTELTYGTLQRKMTLDYYLEPFLKDSK---KIQGWVMNLLRVTLYQMVYLDK 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQARAL 223
+P A + E V +AK G LVNG+LR + L++ + + P L
Sbjct: 96 IPDRAAIYEAVEIAKKRGHKGISGLVNGVLRNIQRSGLRNLSDIVDP---------VERL 146
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
+ SHP+W+V+RW LG ++ ++ N + P + R N K ++R + L
Sbjct: 147 SIETSHPLWLVKRWVTQLGFDKTKEMCELNLTAPVQTARVNITK-ISRDACLALLQEEGY 205
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
E S + E I+ G N+ + K+GL +QDES+ LV + ++D CAA
Sbjct: 206 NVEASPVIPEAIKALRG--NLATSKAFKDGLFTIQDESSMLVAYALGISLNDRVLDACAA 263
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FAD 399
PGGK+ ++A L G V ++D+++ ++++++E+AK +N+ I T D R FA
Sbjct: 264 PGGKSTHIAERLDHTGAVVSLDLHEHKVKLISESAKRLGLNN-IETKALDSRKVQEYFAP 322
Query: 400 NSTVKCDKVLLDAPCSGLGVLSK 422
S DK+LLDAPCSGLGV+ +
Sbjct: 323 ES---FDKILLDAPCSGLGVMRR 342
>gi|146318081|ref|YP_001197793.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis 05ZYH33]
gi|146320260|ref|YP_001199971.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis 98HAH33]
gi|253751274|ref|YP_003024415.1| ribosomal RNA small subunit methyltransferase [Streptococcus suis
SC84]
gi|253753175|ref|YP_003026315.1| ribosomal RNA small subunit methyltransferase [Streptococcus suis
P1/7]
gi|253754998|ref|YP_003028138.1| ribosomal RNA small subunit methyltransferase [Streptococcus suis
BM407]
gi|386577381|ref|YP_006073786.1| rRNA SAM-dependent methyltransferase [Streptococcus suis GZ1]
gi|403061067|ref|YP_006649283.1| 16S rRNA methyltransferase B [Streptococcus suis S735]
gi|145688887|gb|ABP89393.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis 05ZYH33]
gi|145691066|gb|ABP91571.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis 98HAH33]
gi|251815563|emb|CAZ51146.1| putative ribosomal RNA small subunit methyltransferase
[Streptococcus suis SC84]
gi|251817462|emb|CAZ55203.1| putative ribosomal RNA small subunit methyltransferase
[Streptococcus suis BM407]
gi|251819420|emb|CAR44892.1| putative ribosomal RNA small subunit methyltransferase
[Streptococcus suis P1/7]
gi|292557843|gb|ADE30844.1| rRNA SAM-dependent methyltransferase [Streptococcus suis GZ1]
gi|402808393|gb|AFQ99884.1| 16S rRNA methyltransferase B [Streptococcus suis S735]
Length = 437
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 104/325 (32%), Positives = 160/325 (49%), Gaps = 38/325 (11%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L +D L T++V GT+ + L+ + D + ++ + +L + Y++V LD
Sbjct: 40 LSAQDKGLATELVYGTVSRKITLEWYLAHFIEDRE---KLDTWVYYLLMLSLYQLVYLDK 96
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +AVV+E V +AK +PG VN ILRKL +SLP P + + + + L+
Sbjct: 97 LPTHAVVNEAVNIAK--RKPGTDKFVNAILRKL----SQDSLPKP---ADIKRKNKRLSV 147
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR--ADLVMQLNLLKV 283
YS PVW+V+ G E A K+ + S+R + V R +L Q + L
Sbjct: 148 QYSVPVWLVQTLIAEYGDERAEKIFQSLHDRNKASVRVTDGQQVERLAEELGAQHSQLSP 207
Query: 284 -----PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 338
PH D F KEGL +QDE++ LV +D Q + I+
Sbjct: 208 VGLVKPHGHFAGTDYF----------------KEGLITIQDETSQLVAPTLDIQGDEIIL 251
Query: 339 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL-RTF 397
D CAAPGGKT +MAS L+ G VYA+D+ +L ++ E A+ + I T D R
Sbjct: 252 DACAAPGGKTCHMASYLT-DGKVYALDLYDHKLNLIEENARRLGLADKIETKGLDASRVH 310
Query: 398 ADNSTVKCDKVLLDAPCSGLGVLSK 422
+ DK+L+DAPCSG+G++ +
Sbjct: 311 EEFGPDTFDKILVDAPCSGIGLIRR 335
>gi|70726699|ref|YP_253613.1| hypothetical protein SH1698 [Staphylococcus haemolyticus JCSC1435]
gi|68447423|dbj|BAE05007.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 435
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 173/356 (48%), Gaps = 34/356 (9%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
T D+ D D L T++V GT++ + LD + + ++ + Q+L + Y+ +
Sbjct: 33 TGDVSDIDKPLYTELVYGTVKRKMTLDFYLRPFVK-----TKIKSWVRQLLWMSLYQYIY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
LD +P +A+++E V +AK P GN+VN ILR + + LP LE + R
Sbjct: 88 LDKVPNHAIINEAVNIAKHRGGPHNGNVVNAILRTIFRSE------LPSLESIKNDKQR- 140
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
+A YS P W++ W + G E K+ + ++R N+ K D+V L
Sbjct: 141 MAVEYSIPKWIIEHWITHYGVETTRKMASSFFDQTAGTVRVNTSKNKVE-DVVSSLQ--- 196
Query: 283 VPHELSLHLDEFIRVKTGLQN--VIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ +DE I L+ +I++ K G ++QD+S+ V ++ + I+D
Sbjct: 197 -SEGYEVEVDELIPYCLHLKGHPIIESSNFKNGNISIQDKSSMFVGYLMGVEENDVILDA 255
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
C+APGGK ++A L+ G V A DI+K ++ ++ E Q+N++ H + + D
Sbjct: 256 CSAPGGKACHIAELLAPSGHVDATDIHKHKIGLIKENIVKLQLNNIKAFDHDATKPYKD- 314
Query: 401 STVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
DK+L+DAPCSGLGVL R ++Y +T +Q L E + +L
Sbjct: 315 ---VYDKILVDAPCSGLGVL----------RHKPEIKYVQTQQDIQDLVELQLEIL 357
>gi|18977637|ref|NP_578994.1| nol1-nop2-sun family nucleolar protein II [Pyrococcus furiosus DSM
3638]
gi|18893359|gb|AAL81389.1| putative nucleolar protein II (nol1-nop2-sun family) [Pyrococcus
furiosus DSM 3638]
Length = 450
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 151/296 (51%), Gaps = 12/296 (4%)
Query: 124 RWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVAL 183
+WR +D +I + K ++P L +LRIG +E+ + P D VR+ K
Sbjct: 59 KWRAKIDFIINSVLRGSKV-EDLDPYLANLLRIGVFEMKFKKINPAIATDSIVRVVKEKF 117
Query: 184 RPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQ 243
N ILR++ K N L +L+ DR + LA +SHP W V LG
Sbjct: 118 DLTRAKFANAILREVE--KFNVEKALKRLKEKDRIEW--LAVRFSHPRWYVEYVIDLLGY 173
Query: 244 EEAIKLMVWNNSDPSFSLRANSRKG-VTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQ 302
+EA++L++ N + +R NS K + + ++ N ++V + +D+ ++V +
Sbjct: 174 DEAVRLLLSNLKPQRYYVRINSLKADIEKVKKYLEENGVRVAY---TPVDDVLKVLEYEK 230
Query: 303 NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVY 362
+ + K+G +QD ++ V V+ P+PG+ ++D AAPG KT + A+ + +G +
Sbjct: 231 PITKLEGYKKGYFVIQDLASAYVAHVLSPEPGERVLDLAAAPGSKTFHAAALMENKGEIV 290
Query: 363 AIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLG 418
A+D + RL + E K V +V + ++AD +++ D K DK++LDAPCS G
Sbjct: 291 AVDYSYERLVRMKERMKKLGVKNV-KLVYADGQSYIDKE--KFDKIILDAPCSSSG 343
>gi|293374996|ref|ZP_06621291.1| ribosomal RNA small subunit methyltransferase B [Turicibacter
sanguinis PC909]
gi|325843368|ref|ZP_08167951.1| ribosomal RNA small subunit methyltransferase B [Turicibacter sp.
HGF1]
gi|292646406|gb|EFF64421.1| ribosomal RNA small subunit methyltransferase B [Turicibacter
sanguinis PC909]
gi|325489397|gb|EGC91770.1| ribosomal RNA small subunit methyltransferase B [Turicibacter sp.
HGF1]
Length = 444
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/318 (28%), Positives = 157/318 (49%), Gaps = 16/318 (5%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
DL +D +T++V GT++ ++ L+ + ++ + ++++ Y+I+ LD
Sbjct: 34 DLTIQDKNFMTELVYGTLQHQQLLNFYATPFFN-----GKVKGWIRILIQMTLYQILYLD 88
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A + E V +AK G LVN ILR+++ PL L+ A LA
Sbjct: 89 SVPEHAAISEAVNIAKKRGGQFNGKLVNAILREMM------RNPLSNLQ-EIEDDAERLA 141
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
T SHP+W+++ W K G E+ ++ NN + ++R N KG
Sbjct: 142 TKTSHPLWLIKLWIKQFGMEKTEQMANANNERVNVTIRVNGVKGTKEELKQKLEEEGIQC 201
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
+ L D + K NVI+ ++G VQDES+ LV + P+ ++D C+AP
Sbjct: 202 RDGFLSPDALVITKG---NVIKTKAFEQGWFYVQDESSMLVARALKPKHHTKVLDTCSAP 258
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404
GGKT ++A + G+VYA DI +++++ + K + +V+ + + +
Sbjct: 259 GGKTTHVAEMMRQTGMVYAHDIYPHKIKLIEDNVKRLGLKNVVVNLQDATKLTECYPSES 318
Query: 405 CDKVLLDAPCSGLGVLSK 422
D VL+DAPCSGLG+L +
Sbjct: 319 FDSVLVDAPCSGLGILRR 336
>gi|256851318|ref|ZP_05556707.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii 27-2-CHN]
gi|260660742|ref|ZP_05861657.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii 115-3-CHN]
gi|297206188|ref|ZP_06923583.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii JV-V16]
gi|256616380|gb|EEU21568.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii 27-2-CHN]
gi|260548464|gb|EEX24439.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii 115-3-CHN]
gi|297149314|gb|EFH29612.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii JV-V16]
Length = 437
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 105/341 (30%), Positives = 168/341 (49%), Gaps = 32/341 (9%)
Query: 92 EMGYVERTL--GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPL 149
+ GY +L + +D VT +V GTI+++ +L++ + L + ++PL
Sbjct: 19 QKGYSNLSLSHALNENNFSQKDQAFVTQLVYGTIQYQLFLEYQLKDLLRTKLKEDYLKPL 78
Query: 150 LLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNS 206
LL + Y+++ L+ +P AV+DE +LAK + + LVNGILR L+
Sbjct: 79 LL----MSVYQLIFLNRVPNRAVLDEANKLAKSFGKKNSSGYRLVNGILRSF--LRRGQV 132
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
LP PK L+ S P W+V+ + K G + K++ PS + RA +
Sbjct: 133 LPSPK------DPVHFLSIKESMPEWLVQYFIKNWGLKRTEKIL------PSLNKRAENS 180
Query: 267 ----KGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESA 322
KG + ++ L S D V +++ K G +QDE+A
Sbjct: 181 IRIAKGANQTQIINSLKKQGYSLTESTLADNCFLVN---HSIVNTDEFKAGQITIQDEAA 237
Query: 323 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ 382
LVV D Q ++D CAAPGGKT +A L QG V ++DI+K +L ++ + A+
Sbjct: 238 SLVVDCFDLQENDYVLDTCAAPGGKTSQLAENLP-QGKVISLDIHKKKLNLIKKYAERMH 296
Query: 383 VNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSGLGVLSK 422
V+ + T+ D R A++ S K DK+L+DAPCSGLG+L +
Sbjct: 297 VDERVETLALDARKAAEHFSDTKFDKILVDAPCSGLGLLRR 337
>gi|254556524|ref|YP_003062941.1| rRNA methylase () [Lactobacillus plantarum JDM1]
gi|254045451|gb|ACT62244.1| rRNA methylase (putative) [Lactobacillus plantarum JDM1]
Length = 447
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/323 (29%), Positives = 160/323 (49%), Gaps = 23/323 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDH-LICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+D RD+ L+T++V G I+ R L++ L + H + ++P + ++L Y+ LD
Sbjct: 38 MDRRDINLLTNMVYGVIQHRLTLEYWLTPFVRHPHQ----IDPWVRELLLSALYQWQYLD 93
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P AV +E + +AKV PG V G+L ++ + LP + R L+
Sbjct: 94 KIPQRAVFNETIEIAKVKGHPGIRRFVTGVLHQM------DRSGLPSFDAIKDPDER-LS 146
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN--LLK 282
YS P+W+++ + LG E+ +++ N +LR N + +N L
Sbjct: 147 VTYSMPIWLIQELRRQLGAEKMERILSSLNQPAKQALRVNPALSTVEDVTTVLINDGLTI 206
Query: 283 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
P E+S + T Q I ++ G+ VQDESA LVV ++ QP ++D CA
Sbjct: 207 TPSEIS----PLGLIATDGQ-AINTEAMRYGMFTVQDESAQLVVPALNLQPSDRVLDACA 261
Query: 343 APGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
APGGKT +A+ L + G V A+DI+ +++++ + A V + D R
Sbjct: 262 APGGKTTQIAASLDAEQGGTVVALDIHANKVKLIGQNAARMHVADRVEATELDARKVETQ 321
Query: 401 STVKC-DKVLLDAPCSGLGVLSK 422
+ D++L+DAPCSGLG++ +
Sbjct: 322 FNAESFDRILVDAPCSGLGLMRR 344
>gi|373115333|ref|ZP_09529508.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
bacterium 7_1_58FAA]
gi|371670487|gb|EHO35567.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
bacterium 7_1_58FAA]
Length = 436
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 105/335 (31%), Positives = 167/335 (49%), Gaps = 29/335 (8%)
Query: 94 GYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQI 153
GY+++ +G LD RD L T + G ++ R LD + LC +E + +
Sbjct: 24 GYLKKAIG--GAKLDGRDAALATRLCFGVLQNRMLLDFYLSKLC--ATPLHKLEASIRNL 79
Query: 154 LRIGFYEIVKLD-MPPYAVVDENVRLA-KVALRPGAGNLVNGILRKLVLLKDNNSLPLPK 211
LR+G Y+++ L+ +P +A V E V LA K A P A LVNG+LR L+ ++ P
Sbjct: 80 LRLGAYQLLYLNRVPDHAAVSEAVSLARKKAKNPRAAGLVNGVLRSLIRQREAMEPPA-- 137
Query: 212 LEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR 271
L+T YSHP W+V + LG+EEA L+ +N +P + N+ K ++
Sbjct: 138 ----------DLSTRYSHPQWLVDSFVARLGREEAEALLAADNGEPPTCAQVNTLK-ISA 186
Query: 272 ADLVMQLNLLKVPHELSLHLDEFIRVK-TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVD 330
+L L V E L + + + TG ++A ++G +QD +A L V
Sbjct: 187 EELAAMLTAEGVAVEPHPWLPDCLFLNGTGSLEHLEA--FQKGYFYIQDAAAHLAVLAAA 244
Query: 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTI 390
PQPG ++D CAAPGGK+ A + +G V + DI+ +LR++ A ++ + I
Sbjct: 245 PQPGWRVLDACAAPGGKSFAAAIAMENRGSVTSCDIHPHKLRLIE--AGYQRLG--LDII 300
Query: 391 HADLRTFADNSTV---KCDKVLLDAPCSGLGVLSK 422
HA+L + D ++ D PCSGLG++ K
Sbjct: 301 HANLLDGKERKAELLNSFDLIIADVPCSGLGIIRK 335
>gi|421768804|ref|ZP_16205514.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
rhamnosus LRHMDP2]
gi|421771044|ref|ZP_16207705.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
rhamnosus LRHMDP3]
gi|411185653|gb|EKS52780.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
rhamnosus LRHMDP2]
gi|411186479|gb|EKS53603.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
rhamnosus LRHMDP3]
Length = 446
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 114/384 (29%), Positives = 177/384 (46%), Gaps = 48/384 (12%)
Query: 85 GKGSGDNEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKT 142
GKG GY TL LD RD L+T+IV G I+ + LD+L+ + +
Sbjct: 19 GKG------GYSNLTLDHVITKYQLDSRDAGLLTNIVYGVIQHQLTLDYLLAPFVKNRQ- 71
Query: 143 FSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLL 201
++ + +L+ Y++ LD +P AV ++ +AK G V G+LR+
Sbjct: 72 ---LDTWVRCLLQTAVYQLQYLDKVPARAVFFDSTEIAKKLGHQGVAKFVTGVLRQ---- 124
Query: 202 KDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSL 261
+ P P + + LA S PVW+V++ LG+ + K++ N S+
Sbjct: 125 AQRSGYPDPMTIADP---IQRLAITSSTPVWLVKKLQAQLGETKTAKILAAINQPAHASI 181
Query: 262 RANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLK------EGLC 315
R N+ K A LLK L E GL V G L +GL
Sbjct: 182 RVNTTKTTVAA-------LLKALQPQFSALKESPLTPVGL--VAPGGHLAGTREFADGLY 232
Query: 316 AVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRI 373
+QDES+ LV +D QPG ++D CAAPGGKT ++A L G V A+D++ ++R+
Sbjct: 233 TMQDESSMLVAPSLDVQPGDQVLDACAAPGGKTTHIAQYLDPDQGGRVTALDLHANKVRL 292
Query: 374 LNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAPCSGLGVLSKTCVGIGDWRI 432
+ + AK ++ + D R A N + DK+L+DAPCSGLG++ R
Sbjct: 293 IQQNAKRLDLDDRVAAQVMDARQVAANFAAESFDKILVDAPCSGLGLI----------RR 342
Query: 433 WKSLRYCKTSFLMQHLCETKYLLL 456
++Y K +QHL + + +L
Sbjct: 343 KPEIKYTKQPEDLQHLQKIQLAIL 366
>gi|417917958|ref|ZP_12561512.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
parasanguinis SK236]
gi|342829273|gb|EGU63631.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
parasanguinis SK236]
Length = 437
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 98/318 (30%), Positives = 164/318 (51%), Gaps = 23/318 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D+D VT++V GT+ + L+ + + D + ++P L +L + Y++V LD
Sbjct: 39 LSDKDRSFVTEVVYGTVARKITLEWYLAHVIEDR---TKLDPWLYYLLMMSLYQLVYLDR 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+V+E V++AK + G+ VN ILRKL L++ LP ++ R R +
Sbjct: 96 IPDHAIVNEAVQIAK-RRKEGSEKFVNAILRKL--LREG----LPAVDTIKRKNKR-YSV 147
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
YS PVW+V+ + G+E A + SL ++ + DL + L ++
Sbjct: 148 EYSLPVWLVKALIEEYGEERACAIFK--------SLYQRNKSSIRVIDLDEKEELAQLLE 199
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
S VK + L KEG +QDES+ LV +D Q + ++D CAAPG
Sbjct: 200 ATSSLFAPSALVKEQ-GHFAAHSLFKEGRITIQDESSQLVAPALDLQGDEWVLDACAAPG 258
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHADLRTFADNSTVK 404
GKT ++AS L+ G V A+D+ +L+++ E A +LH + ++ + F
Sbjct: 259 GKTTHLASYLTT-GKVTALDLYDHKLKLIQENANRLHVADKILTKKLDATKVFETFGPDA 317
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG+G++ +
Sbjct: 318 FDKILVDAPCSGIGLIRR 335
>gi|78186474|ref|YP_374517.1| Fmu, rRNA SAM-dependent methyltransferase [Chlorobium luteolum DSM
273]
gi|78166376|gb|ABB23474.1| Fmu, rRNA SAM-dependent methyltransferase [Chlorobium luteolum DSM
273]
Length = 442
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/317 (29%), Positives = 153/317 (48%), Gaps = 27/317 (8%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLIC-LLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPP 168
D L T + G +R R LD +I HD + S P +L ILR+G ++++ LD +P
Sbjct: 39 DRALATALTSGVLRQRLQLDFIIAKFYSHDIQKAS---PAVLNILRLGVWQLLFLDRVPR 95
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+A V+E VRLA+ L N +LRK+ + L L D + + L+ ++S
Sbjct: 96 WAAVNECVRLARRYKGERMSKLTNAVLRKISPETVHLDLWL-----KDASLSERLSVLHS 150
Query: 229 HPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELS 288
HP +VRRW G++ ++ ++N P F +R N KG + E
Sbjct: 151 HPEPLVRRWIGNYGEQRTESMLRYDNEHPLFGIRHNPLKGTNAKGAEGE--------ESG 202
Query: 289 LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKT 348
++ + LL++GL +VQ+ + L V ++DPQP ++D CAAPGGK
Sbjct: 203 WQESGIPGIRLAADFHLFEPLLRQGLASVQNPTQALAVLLLDPQPDWKVLDLCAAPGGKA 262
Query: 349 LYMASCLSGQGLVYAIDINKG---RLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405
+ A + +G + A+D R++ L +T + S+I D R F +
Sbjct: 263 AHAAELMGNRGEIIALDRYPQKTLRIQALADTLGI----SIIEARTGDAREF--TPPFQP 316
Query: 406 DKVLLDAPCSGLGVLSK 422
D +L+DAPC+G GVL +
Sbjct: 317 DAILVDAPCTGTGVLGR 333
>gi|329120994|ref|ZP_08249625.1| RNA methyltransferase Sun [Dialister micraerophilus DSM 19965]
gi|327471156|gb|EGF16610.1| RNA methyltransferase Sun [Dialister micraerophilus DSM 19965]
Length = 448
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 163/322 (50%), Gaps = 16/322 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F++ L RD L+T++V G R YL +++ L + ++ + + + +L +G Y++
Sbjct: 37 FKSHKLLSRDKALITELVYGICRKCNYLQYIVEKLSN--RSINKIHKSVRILLYLGLYQL 94
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKD--NNSLPLPKLEGNDRA 218
+ LD +P A V+E V+L K G VN ILR + K N+ L K E
Sbjct: 95 IYLDKIPESAAVNETVKLTKKITHQGNVRFVNAILRNFLRKKAEINDFSKLSKFE----- 149
Query: 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL 278
L+ IY+ P+W++++W K G + +++ N + +R N K +T DL+
Sbjct: 150 ---KLSLIYNQPIWLIQKWNKDYGINKTKEILQAFNLPENLFVRCNELK-ITTNDLIKIF 205
Query: 279 NLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 338
+ K+ + + +K G+ N+ + LL++G +Q S+ + +DP+P + ++
Sbjct: 206 DENKIEYSGVENFPNIFLIKNGV-NLFKTDLLEKGYIFIQSISSIIPAYALDPKPYEKVL 264
Query: 339 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398
D CAAPG KT +A + +G + A D+ +++++ E V V + D
Sbjct: 265 DMCAAPGSKTTQIAQLMDNKGSIDAWDLYPHKIKLIEENINRLGVKIVTPKLQ-DATKLL 323
Query: 399 DNSTVKCDKVLLDAPCSGLGVL 420
T + DKVLLDAPCSGLGVL
Sbjct: 324 PTLTGQYDKVLLDAPCSGLGVL 345
>gi|418411636|ref|ZP_12984903.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis BVS058A4]
gi|410892362|gb|EKS40156.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis BVS058A4]
Length = 435
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 99/322 (30%), Positives = 169/322 (52%), Gaps = 28/322 (8%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEI 161
T +++ D L T++V GTI+ + LD+L+ K F + ++ + Q+L + Y+
Sbjct: 33 TNNINTVDKNLFTELVYGTIKRKYTLDYLL-------KPFIKTKIKSWVRQLLWMSLYQY 85
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD +P +A++ E V +AK GN+VNGILR ++ + LP LE D +
Sbjct: 86 LYLDKIPNHAIIHEAVDIAKKRGGYHTGNIVNGILRTVMRTE------LPSLEDIDDTKK 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R +A YS P W+V W + G E+ + + ++RAN ++RA + ++
Sbjct: 140 R-IAIQYSLPKWIVDHWVTHFGVEKTENIARSFLEPVATTVRAN----ISRASIDSIISK 194
Query: 281 LKVP--HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 338
L+ H + F +G+ V+ + KEG ++QD+S+ +V V++ ++
Sbjct: 195 LEQEGYHVKKDDMLPFCLHISGMP-VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDDKVL 253
Query: 339 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398
D C+APGGK +MA LS +G V A DI++ ++ ++ + K ++N+ I D
Sbjct: 254 DACSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQNIKKLKLNN-INAFQHDATEVY 312
Query: 399 DNSTVKCDKVLLDAPCSGLGVL 420
D DK+L+DAPCSGLGVL
Sbjct: 313 DKM---YDKILVDAPCSGLGVL 331
>gi|347750545|ref|YP_004858110.1| sun protein [Bacillus coagulans 36D1]
gi|347583063|gb|AEO99329.1| sun protein [Bacillus coagulans 36D1]
Length = 447
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 98/317 (30%), Positives = 165/317 (52%), Gaps = 24/317 (7%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L+T+I GT++ ++ LD+ + +E + +LR+ Y++V LD +P
Sbjct: 43 DRALLTEITYGTLQRKQTLDYFLAPFLR-----KKIENWVRILLRLSLYQMVYLDKIPDR 97
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A++ E V +AK G +VNG+LR + + L ++E D + ++AT SH
Sbjct: 98 AIIFEAVEIAKKRGHRGISGIVNGVLRAI---QRGGLRSLKEIE--DPLERLSVAT--SH 150
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN-SRKGVTRADLVMQLNLLKVPHELS 288
P W+V RW + G + ++ N P + R N +R V +++ +L E S
Sbjct: 151 PHWLVARWAEAYGYKTTKEMCEANLIPPLQTARVNLNRASVD--EVIEKLEREGFTVERS 208
Query: 289 LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKT 348
+ E +R + G N+ ++ KEGL +QDES+ V + Q GQ I+D CAAPGGKT
Sbjct: 209 PVIPEAVRSRKG--NLARSACFKEGLFTIQDESSMAVAYALCIQEGQRILDACAAPGGKT 266
Query: 349 LYMASCLSGQGLVYAIDINKGRLRILNETAK---LHQVNSVIRTIHADLRTFADNSTVKC 405
++A L G G V A+D++ +++++ E A+ QV ++ F N+
Sbjct: 267 THIAEKLEGTGEVVALDLHPHKVKLVQENAERLGTGQVEAIAMDSRDAGARFEKNT---F 323
Query: 406 DKVLLDAPCSGLGVLSK 422
D++L+DAPC+G GVL +
Sbjct: 324 DRILVDAPCTGFGVLRR 340
>gi|126649674|ref|ZP_01721910.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus sp. B14905]
gi|126593393|gb|EAZ87338.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus sp. B14905]
Length = 453
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/318 (29%), Positives = 164/318 (51%), Gaps = 18/318 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
++ +D L+T++ GT++ + LD+ + S++ + +LRI Y++ L
Sbjct: 44 IEAKDRALLTELTYGTLQHKMTLDYYLEPFIR-----GSIDHWVRWLLRISLYQMQYLTR 98
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A V+E V +AK G + VNGILR ++ +P + + R LA
Sbjct: 99 IPAHAAVNEAVEIAKRRGHRGIASTVNGILRSVL------RQGVPAITDIENPIER-LAI 151
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHP+W+V+R+ G E A ++ NN P ++R N+ K VT + +L +
Sbjct: 152 ETSHPIWLVQRFVDNYGLEVATGMLHENNVPPMQTVRVNTTK-VTVEQAIAELEAEGLTA 210
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ S + E + + G A KEG +QDES+ + V++P PG ++D CAAPG
Sbjct: 211 KQSEVIPECLHLTNGQPARTHA--FKEGHITIQDESSMIPANVLNPSPGMRVLDMCAAPG 268
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405
GKT ++A + +G + A D++ +L +++ + ++ +I T D R + +
Sbjct: 269 GKTTHLAEIMKNEGSILATDLHPHKLDLIDHNTERLGLD-IIETAPIDGRKAPEFLQAES 327
Query: 406 -DKVLLDAPCSGLGVLSK 422
D VL+DAPCSGLGV+ +
Sbjct: 328 YDAVLVDAPCSGLGVMRR 345
>gi|168704061|ref|ZP_02736338.1| Fmu, rRNA SAM-dependent methyltransferase:Nop2p [Gemmata
obscuriglobus UQM 2246]
Length = 465
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 103/357 (28%), Positives = 153/357 (42%), Gaps = 56/357 (15%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL- 164
+L +D R VT +V G IR LD L+ H +++ + +LR+G +++ L
Sbjct: 35 NLSPQDRRFVTQLVFGVIRRGGTLDALLKPFIH--LPTHAVQDRVWDLLRLGAFQLTFLT 92
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNN----------------SLP 208
+P +A V E V LA+ P A VNG+LR++ L + S P
Sbjct: 93 HVPKHAAVHETVELAEHVGAPKAKGFVNGVLRRIAELTTDEFTDAPGAAAVPFALVESAP 152
Query: 209 LPKLEGNDRAQARAL----------------ATIYSHPVWMVRRWTKYLGQEEAIKLMVW 252
P EG R R L A +S P W+ RW K G +E ++L W
Sbjct: 153 TPS-EGGGRGSYRRLTKPVLPDPATDPAPYFAAAFSFPQWLANRWLKRYGVDECVRLGFW 211
Query: 253 NNSDPSFSLRANSRKGVTRADLVMQLNLLKV-------PHELSLHLDEFIRVKTGLQNVI 305
N+ P +R N + +R +QL + P L IR G
Sbjct: 212 FNAAPPLWVRVNKLR-ASRESYRIQLAAQTIEVEPGEHPQALRFSQHHSIRDLPGY---- 266
Query: 306 QAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAID 365
EG AVQD S+ LV + + QPG I+D CAAPGGKT ++ + G+G + A D
Sbjct: 267 -----AEGDFAVQDHSSMLVASALGVQPGMRILDACAAPGGKTTHLMELMDGRGHITACD 321
Query: 366 INKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
I+ RL + A+ ++ + + D F D L+D PCS GV+ +
Sbjct: 322 IDPKRLETVAALAQRMRLTGIETVLLKDNEEFPAGP---FDAALVDVPCSNTGVIGR 375
>gi|113954299|ref|YP_729912.1| sun protein [Synechococcus sp. CC9311]
gi|113881650|gb|ABI46608.1| sun protein [Synechococcus sp. CC9311]
Length = 449
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 113/370 (30%), Positives = 173/370 (46%), Gaps = 45/370 (12%)
Query: 65 AVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIR 124
A+ ++ GA+AD+ +ER L R L D L T++ G IR
Sbjct: 21 ALEVLEAVAAGAYADV--------------ALERAL--RQNPLSPADRGLATELAYGCIR 64
Query: 125 WRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVAL 183
WR++LD + L + P L +L +G Y+++++ +P A VD V LAK
Sbjct: 65 WRQWLDGWLDRL--GKVPAHKQPPRLRWLLHLGLYQVLRMQRIPASAAVDTTVELAKRQR 122
Query: 184 RPGAGNLVNGILRKLVLLKD-NNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLG 242
+VNG+LR + K+ +LP+P D++ R LA +S PVW + G
Sbjct: 123 LSKLSPVVNGVLRSALRAKEAGETLPVP-----DQSAER-LALCHSLPVWFAESLLSWSG 176
Query: 243 QEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM-QLNLLKVPHELSLHLDEFIRVKTGL 301
++A ++ V N P LR N + + DLV +L VP + GL
Sbjct: 177 PDKAERVAVACNQVPPLDLRVN--RLCSSPDLVAAELAAAGVPTK------PIDACPDGL 228
Query: 302 QNVIQAGLLK------EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL 355
Q + AG L+ +G +VQD SA V ++ P+PG I+D CAAPGGK ++A +
Sbjct: 229 QVLAPAGDLRRWPGFEQGHWSVQDRSAQGVAPLLAPRPGDRILDACAAPGGKATHLAELM 288
Query: 356 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK---CDKVLLDA 412
G ++A+D + GRL+ + A S I + AD + ++LLD
Sbjct: 289 GDGGEIWAVDRSAGRLKRVAANAARLGCGS-IHALAADATNLLEQQPEWRGFFQRILLDV 347
Query: 413 PCSGLGVLSK 422
PCSGLG LS+
Sbjct: 348 PCSGLGTLSR 357
>gi|410456987|ref|ZP_11310834.1| 16S rRNA methyltransferase B [Bacillus bataviensis LMG 21833]
gi|409926961|gb|EKN64112.1| 16S rRNA methyltransferase B [Bacillus bataviensis LMG 21833]
Length = 449
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 99/318 (31%), Positives = 163/318 (51%), Gaps = 24/318 (7%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D+ L+T++ GT++ R LD + D K ++ + +LR+ Y++V LD +P
Sbjct: 43 DVGLLTELTYGTLQRRMALDFFLQPFIKDNKKLANW---IHHLLRMTLYQMVYLDRIPDR 99
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG-NDRAQARALATIYS 228
A + E V +AK G +LVNG+LR + LP L +D + +L T S
Sbjct: 100 AAIYEAVEIAKSRGHKGIASLVNGVLRNI------QREGLPSLSDVSDPIERLSLET--S 151
Query: 229 HPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELS 288
HP W+V RW G E+ ++ N + P + R N K ++R + V L E S
Sbjct: 152 HPEWLVTRWVNQFGYEKTKEMCEINLTAPMQTARVNLTK-ISRDECVAILEEDGFQIEKS 210
Query: 289 LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKT 348
+ E IR G N+ K G+ +QDES+ L + + ++D CAAPGGK+
Sbjct: 211 PIIPEAIRSLKG--NLASTIAFKYGMLTIQDESSMLAAYALGAMENEFVLDACAAPGGKS 268
Query: 349 LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR----TFADNSTVK 404
++A L G V ++D+++ +++++N+ A+ + S I+T +D R F D +
Sbjct: 269 THIAEKLENTGEVISVDLHQHKVKLINDNARRLGL-SNIKTNVSDSRLLQEKFKDET--- 324
Query: 405 CDKVLLDAPCSGLGVLSK 422
++LLDAPCSGLGV+ +
Sbjct: 325 FHRILLDAPCSGLGVMRR 342
>gi|365841978|ref|ZP_09383022.1| ribosomal RNA small subunit methyltransferase B [Flavonifractor
plautii ATCC 29863]
gi|364576620|gb|EHM53936.1| ribosomal RNA small subunit methyltransferase B [Flavonifractor
plautii ATCC 29863]
Length = 436
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 106/335 (31%), Positives = 168/335 (50%), Gaps = 29/335 (8%)
Query: 94 GYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQI 153
GY+++ +G LD RD L T + G ++ R LD + LC +E + +
Sbjct: 24 GYLKKAIG--GAKLDGRDAALATRLCFGVLQNRMLLDFYLSKLC--ATPLHKLEASIRNL 79
Query: 154 LRIGFYEIVKLD-MPPYAVVDENVRLA-KVALRPGAGNLVNGILRKLVLLKDNNSLPLPK 211
LR+G Y+++ L+ +P +A V E V LA K A P A LVNG+LR L+ + +L P
Sbjct: 80 LRLGAYQLLYLNRVPDHAAVSEAVSLARKKAKNPRAAGLVNGVLRSLI--RQREALEPPA 137
Query: 212 LEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR 271
L+T YSHP W+V + LG+EEA L+ +N +P + N+ K ++
Sbjct: 138 ----------DLSTRYSHPQWLVDSFVARLGREEAEALLAADNGEPPTCAQVNTLK-ISA 186
Query: 272 ADLVMQLNLLKVPHELSLHLDEFIRVK-TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVD 330
+L L V E L + + + TG ++A ++G +QD +A L V
Sbjct: 187 EELAAMLTAEGVAVEPHPWLPDCLFLNGTGSLEHLEA--FQKGYFYIQDAAAHLAVLAAA 244
Query: 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTI 390
PQPG ++D CAAPGGK+ A + +G V + DI+ +LR++ A ++ + I
Sbjct: 245 PQPGWRVLDACAAPGGKSFAAAIAMENRGSVTSCDIHPHKLRLIE--AGYQRLG--LDII 300
Query: 391 HADLRTFADNSTV---KCDKVLLDAPCSGLGVLSK 422
HA+L + D ++ D PCSGLG++ K
Sbjct: 301 HANLLDGKERKAELLNSFDLIIADVPCSGLGIIRK 335
>gi|310659156|ref|YP_003936877.1| RsmB [[Clostridium] sticklandii]
gi|308825934|emb|CBH21972.1| RsmB [[Clostridium] sticklandii]
Length = 444
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/323 (28%), Positives = 168/323 (52%), Gaps = 17/323 (5%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYE 160
F +D+R+ VT++V G + YLD+ I + S + +L +GFY+
Sbjct: 40 AFNKNTIDNREKGFVTELVYGALSRLIYLDYQIEQFL--DMRASKLSKQAKTVLEMGFYQ 97
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRA- 218
+ +D + +A VDE+V+L K AG ++N ++RK V K E D+
Sbjct: 98 LEFMDSVSDFASVDESVKLIKKVDNRSAG-IINAVMRKRV--------KEGKAEYTDKIS 148
Query: 219 -QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQ 277
+A++L+ +S ++ RR+ K +E +L+ PS +R N + T A+L
Sbjct: 149 DKAKSLSIEFSISEYIARRFLKIYKEEFTRQLLSSMLEKPSLFIRLNKLRS-TEAELFEN 207
Query: 278 LNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 337
L + + + +D + +G++N+ L +G +QD S+ L V ++P PG ++
Sbjct: 208 LEQQGIYSKKNDIIDSAYEI-SGMKNIGSNPLFVKGGFVIQDLSSMLAVKALNPLPGDTV 266
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397
+D C+APGGK+ Y+A + +G + ++DI++ ++++L + A V+ +I D F
Sbjct: 267 LDICSAPGGKSFYIADLMENKGQLDSMDISEHKIQMLKKRAVELGVD-IINARVMDATVF 325
Query: 398 ADNSTVKCDKVLLDAPCSGLGVL 420
+ T + DK+L+DAPCSG G++
Sbjct: 326 NEEMTNRYDKILVDAPCSGFGII 348
>gi|171912374|ref|ZP_02927844.1| RsmB [Verrucomicrobium spinosum DSM 4136]
Length = 414
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 101/323 (31%), Positives = 152/323 (47%), Gaps = 37/323 (11%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
T LD RD L+ +V GT+R LD + +C ++ +S+ +LR+G +++
Sbjct: 36 THRLDHRDTALLQTLVMGTLRNIDLLDIWLERVCDNQHLETSVH----WLLRLGIAQLLL 91
Query: 164 LDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
L+MP +AVV+E V A A LVN +LR++ D +PL L DR +
Sbjct: 92 LEMPAHAVVNETVNQAG-----KARGLVNAVLRRV----DRERIPL--LARMDRL---PI 137
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANS-RKGVTRADLVMQLNLLK 282
A SHP W+ RWTK G+ A L W+ S +R N + V+ L +
Sbjct: 138 AERTSHPSWLAERWTKQFGKSAAEALCEWDQQPASTYVRVNQLHPQPLTPEEVLPLEPIS 197
Query: 283 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
P F R T + L G C QD S + ++ PQPG++I+D CA
Sbjct: 198 FPG--------FFRADT-----LPREWLASGRCYAQDPSTVIACDLLAPQPGETILDACA 244
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVI---RTIHADLRTFAD 399
APGGK+ Y+A + QG + D RL+ + + L ++N I R +
Sbjct: 245 APGGKSAYLAQKMQNQGRILTCDSVPRRLQRMQQ--NLERLNVTIAENRQVDWTKPLPPI 302
Query: 400 NSTVKCDKVLLDAPCSGLGVLSK 422
V+ D++LLDAPCS GV+ +
Sbjct: 303 WKGVQVDRILLDAPCSNTGVMRR 325
>gi|358052141|ref|ZP_09146067.1| sun protein [Staphylococcus simiae CCM 7213]
gi|357258369|gb|EHJ08500.1| sun protein [Staphylococcus simiae CCM 7213]
Length = 435
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 96/321 (29%), Positives = 162/321 (50%), Gaps = 26/321 (8%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
T DL+ D L T+IV GT++ + LD+ + + ++ + Q+L + Y+ V
Sbjct: 33 TNDLNAMDKGLFTEIVYGTVKRKYTLDYFLKPFVQ-----TKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
LD +P +A+++E V +AK GN+VNGILR ++ LP E + R
Sbjct: 88 LDKVPDHAIINEAVEIAKERGGYHNGNVVNGILRTMM------RSDLPHFEEIADPKKR- 140
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQLN 279
+A YS P W++ W + G EE ++ ++RAN +TRA D++ +L
Sbjct: 141 MAIEYSMPKWIIDHWVTHYGIEETKAILQSFMEQNDTTVRAN----ITRASIDDIISKLQ 196
Query: 280 LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 339
E L + + Q +I + K+G ++QD+S+ V ++ + I+D
Sbjct: 197 DEGYEVEQDQDLPYCLHILG--QPIINSRSFKDGFVSIQDKSSMFVGHIIGLERHDHILD 254
Query: 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 399
C+APGGK ++A L +G V A DI++ ++ ++N K ++N++ H + +
Sbjct: 255 ACSAPGGKACHIAELLMPEGHVDATDIHEHKIDLINYNIKKLRLNNIKAFQHDATKPYQQ 314
Query: 400 NSTVKCDKVLLDAPCSGLGVL 420
DKVL+DAPCSGLGVL
Sbjct: 315 T----YDKVLVDAPCSGLGVL 331
>gi|420221991|ref|ZP_14726916.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH08001]
gi|420224854|ref|ZP_14729692.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH06004]
gi|394290022|gb|EJE33892.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH08001]
gi|394294257|gb|EJE37943.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH06004]
Length = 435
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 98/325 (30%), Positives = 167/325 (51%), Gaps = 34/325 (10%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEI 161
T +++ D L T++V GTI+ + LD+L+ K F + ++ + Q+L + Y+
Sbjct: 33 TNNINTVDKNLFTELVYGTIKRKYTLDYLL-------KPFIKTKIKSWVRQLLWMSLYQY 85
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD +P +A++ E V +AK GN+VNGILR ++ + LP E D +
Sbjct: 86 LYLDKIPNHAIIHEAVDIAKKRGGFHTGNIVNGILRTVMRTE------LPSFEDIDDTKK 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN-SRKGVTRADLVMQLN 279
R +A YS P W+V W + G E+ + + ++RAN SR + ++
Sbjct: 140 R-IAIQYSLPKWIVDHWVTHFGVEKTENIARSFLETVTTTVRANISRDSIDSIISKLEQE 198
Query: 280 LLKVPHE----LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
V + LH+ +G+ V+ + KEG ++QD+S+ +V V++
Sbjct: 199 GYHVKKDDMLPFCLHI-------SGMP-VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDD 250
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
++D C+APGGK +MA LS +G V A DI++ ++ ++ + K ++N+ I+ D
Sbjct: 251 KVLDACSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQNIKKLKLNN-IKAFQHDAT 309
Query: 396 TFADNSTVKCDKVLLDAPCSGLGVL 420
D DK+L+DAPCSGLGVL
Sbjct: 310 EVYDKM---YDKILVDAPCSGLGVL 331
>gi|386585580|ref|YP_006081982.1| sun protein [Streptococcus suis D12]
gi|353737726|gb|AER18734.1| sun protein [Streptococcus suis D12]
Length = 436
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 100/320 (31%), Positives = 159/320 (49%), Gaps = 28/320 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L +D L T++V GT+ + L+ + D + ++ + +L + Y++V LD
Sbjct: 39 LSAQDKGLATELVYGTVSRKITLEWYLAHFIEDRE---KLDTWVYYLLMLSLYQLVDLDK 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +AVV+E V +AK +PG VN ILRK+ ++LP P + + + + L+
Sbjct: 96 LPTHAVVNEAVNIAK--RKPGTDKFVNAILRKI----SQSTLPNP---ADIKRKNKRLSV 146
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
YS PVW+V+ G E A K+ + S+R + V R +
Sbjct: 147 QYSVPVWLVQTLIAEYGDERAEKIFQSLHDRNKASVRVTDGQQVER-----------LAE 195
Query: 286 ELSLHLDEFIRVKTGLQNVIQAG--LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
EL + V + AG KEGL +QDE++ LV +D Q + I+D CAA
Sbjct: 196 ELGAQHSQLSPVGLVKSHGHFAGTDYFKEGLITIQDETSQLVAPTLDIQGDEIILDACAA 255
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL-RTFADNST 402
PGGKT +MAS L+ G VYA+D+ +L ++ E A+ + I T D R +
Sbjct: 256 PGGKTCHMASYLT-DGKVYALDLYDHKLNLIEENARRLGLEDKIETKGLDASRVHEEFGP 314
Query: 403 VKCDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG+G++ +
Sbjct: 315 DTFDKILVDAPCSGIGLIRR 334
>gi|417091502|ref|ZP_11956379.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis R61]
gi|353533110|gb|EHC02777.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis R61]
Length = 436
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 102/326 (31%), Positives = 160/326 (49%), Gaps = 28/326 (8%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYE 160
T L +D L T++V GT+ + L+ + D + ++ + +L + Y+
Sbjct: 33 ALETSRLSAQDKGLATELVYGTVSRKITLEWYLAHFIEDRE---KLDTWVYYLLMLSLYQ 89
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
+V LD +P +AVV+E V +AK +PG VN ILRKL +SLP P + + +
Sbjct: 90 LVYLDKLPTHAVVNEAVNIAK--RKPGTDKFVNAILRKL----SQDSLPKP---ADIKRK 140
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
+ L+ YS PVW+V+ G E A K+ + S+R + V R
Sbjct: 141 NKRLSVQYSVPVWLVQTLIAEYGDERAEKIFQSLHDRNKASVRVTDGQQVER-------- 192
Query: 280 LLKVPHELSLHLDEFIRVKTGLQNVIQAG--LLKEGLCAVQDESAGLVVAVVDPQPGQSI 337
+ EL + V + AG KEGL +QDE++ LV +D Q + I
Sbjct: 193 ---LAEELGAQHSQLSPVGLVKSHGHFAGTDYFKEGLITIQDETSQLVAPTLDIQGDEII 249
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL-RT 396
+D CAAPGGKT +MAS L+ G V A+D+ + +L ++ E A+ + I T D R
Sbjct: 250 LDACAAPGGKTCHMASYLTS-GKVIALDLYEHKLTLIEENARRLGLADKIETKGLDASRV 308
Query: 397 FADNSTVKCDKVLLDAPCSGLGVLSK 422
+ DK+L+DAPCSG+G++ +
Sbjct: 309 HEEFGPDTFDKILVDAPCSGIGLIRR 334
>gi|448821134|ref|YP_007414296.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus plantarum
ZJ316]
gi|448274631|gb|AGE39150.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus plantarum
ZJ316]
Length = 447
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 94/323 (29%), Positives = 160/323 (49%), Gaps = 23/323 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDH-LICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+D RD+ L+T++V G I+ R L++ L + H + ++P + ++L Y+ LD
Sbjct: 38 MDRRDINLLTNMVYGVIQHRLTLEYWLTPFVRHPHQ----IDPWVRELLLSALYQWQYLD 93
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P AV +E + +AKV PG V G+L ++ + LP + R L+
Sbjct: 94 KIPQRAVFNETIEIAKVKGHPGIRRFVTGVLHQM------DRSGLPSFDAIKDPDER-LS 146
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN--LLK 282
YS P+W+++ + LG E+ +++ N +LR N + +N L
Sbjct: 147 VTYSMPIWLIQELRRQLGAEKMERILSSLNQPAKQALRVNPALSTVEDVTTVLINDGLTI 206
Query: 283 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
P E+S + T Q I ++ G+ VQDESA LVV ++ QP ++D CA
Sbjct: 207 TPSEIS----PLGLIATDGQ-AINTEAMRYGMFIVQDESAQLVVPALNLQPSDRVLDACA 261
Query: 343 APGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
APGGKT +A+ L + G V A+DI+ +++++ + A V + D R
Sbjct: 262 APGGKTTQIAASLDAEQGGTVVALDIHANKVKLIGQNAARMHVADRVEATELDARKVETQ 321
Query: 401 STVKC-DKVLLDAPCSGLGVLSK 422
+ D++L+DAPCSGLG++ +
Sbjct: 322 FNAESFDRILVDAPCSGLGLMRR 344
>gi|414157003|ref|ZP_11413304.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp.
F0442]
gi|410869996|gb|EKS17956.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp.
F0442]
Length = 432
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 96/322 (29%), Positives = 163/322 (50%), Gaps = 31/322 (9%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
D+D VT++V GT+ + L+ + + D + ++ L +L + Y++ LD
Sbjct: 34 FSDKDKSFVTEVVYGTVARKITLEWYLAHVIEDR---TKLDQWLYYLLMMSLYQLAYLDR 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +AVV+E VR+AK + G+ VN ILRKL+ LP E R R +
Sbjct: 91 IPDHAVVNEAVRIAK-RRKEGSEKFVNAILRKLI------REGLPDTETIKRKNKR-YSV 142
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
YS PVW+V+ + G+E A+ + SL ++ + DL + L ++
Sbjct: 143 QYSLPVWLVKALIEEYGEERALAIFE--------SLYQRNKSSIRVIDLSEKEQLAQM-- 192
Query: 286 ELSLHLDEFIRVKTGL----QNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
L +E + + L + L +EG +QDES+ LV +D Q + ++D C
Sbjct: 193 ---LEANESLIATSALVKNQGHFAGHSLFREGRITIQDESSQLVAPALDLQGDEWVLDAC 249
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHADLRTFADN 400
AAPGGKT ++AS L+ G V A+D+ +L+++ E A +LH + ++ + F
Sbjct: 250 AAPGGKTTHLASYLT-TGKVTALDLYDHKLKLIQENANRLHVADKILTKKLDATKVFEAF 308
Query: 401 STVKCDKVLLDAPCSGLGVLSK 422
+ DK+L+DAPCSG+G++ +
Sbjct: 309 GSDAFDKILVDAPCSGIGLIRR 330
>gi|420234376|ref|ZP_14738940.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH051475]
gi|394304338|gb|EJE47744.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH051475]
Length = 435
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 98/325 (30%), Positives = 167/325 (51%), Gaps = 34/325 (10%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEI 161
T +++ D L T++V GTI+ + LD+L+ K F + ++ + Q+L + Y+
Sbjct: 33 TNNINTVDKNLFTELVYGTIKRKYSLDYLL-------KPFIKTKIKSWVRQLLWMSLYQY 85
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD +P +A++ E V +AK GN+VNGILR ++ + LP E D +
Sbjct: 86 LYLDKIPNHAIIHEAVDIAKKRGGYHTGNIVNGILRTVMRTE------LPSFEDIDDTKK 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN-SRKGVTRADLVMQLN 279
R +A YS P W+V W + G E+ + + ++RAN SR + ++
Sbjct: 140 R-IAIQYSLPKWIVDHWVTHFGVEKTENIARSFLEPVTTTVRANISRDSIDSIISKLEQE 198
Query: 280 LLKVPHE----LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
V + LH+ +G+ V+ + KEG ++QD+S+ +V V++
Sbjct: 199 GYHVKKDDMLPFCLHI-------SGMP-VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDD 250
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
++D C+APGGK +MA LS +G V A DI++ ++ ++ + K ++N+ I+ D
Sbjct: 251 KVLDACSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQNIKKLKLNN-IKAFQHDAT 309
Query: 396 TFADNSTVKCDKVLLDAPCSGLGVL 420
D DK+L+DAPCSGLGVL
Sbjct: 310 EVYDKM---YDKILVDAPCSGLGVL 331
>gi|367468304|ref|ZP_09468183.1| Ribosomal RNA small subunit methyltransferase B [Patulibacter sp.
I11]
gi|365816611|gb|EHN11630.1| Ribosomal RNA small subunit methyltransferase B [Patulibacter sp.
I11]
Length = 352
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 96/270 (35%), Positives = 130/270 (48%), Gaps = 14/270 (5%)
Query: 154 LRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL 212
L IG YE++ D P A V V LAK L LVN +LR+ V+ D L LP
Sbjct: 18 LHIGLYELLFSDGTPNRAAVASAVELAKPNL---GFKLVNAVLRR-VIDDDGGKLRLPAD 73
Query: 213 EGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANS-RKGVTR 271
+ D A R +SHP+W+V+RW K+LG L+ N LR N+ R G
Sbjct: 74 DTPDGAAIR-----HSHPLWLVKRWWKWLGPNPTRALLAAGNRPTELVLRVNTLRTGPLG 128
Query: 272 ADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
D ++ L E RV GL + G +EG + VDP
Sbjct: 129 EDGAPAGGIVVPGEPFDDALPEARRVTGGLDVLADPGW-REGHYVAMSRGSMRAARAVDP 187
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
QPG+ ++D CAAPGGKT +MA+ + G+G + AI+ + GR R L T + +V I
Sbjct: 188 QPGERVLDLCAAPGGKTTHMAALMGGEGTIVAIEKHGGRARALRRTCERVGAGNV-EVIS 246
Query: 392 ADLRTFADNSTVKCDKVLLDAPCSGLGVLS 421
D + + D+VLLDAPCSGLG L+
Sbjct: 247 GDALEV-ELAAGSFDRVLLDAPCSGLGTLA 275
>gi|27467810|ref|NP_764447.1| RNA-binding Sun protein [Staphylococcus epidermidis ATCC 12228]
gi|293366818|ref|ZP_06613494.1| RNA methyltransferase Sun [Staphylococcus epidermidis
M23864:W2(grey)]
gi|417656552|ref|ZP_12306235.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU028]
gi|417658902|ref|ZP_12308515.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU045]
gi|417909812|ref|ZP_12553545.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU037]
gi|418605430|ref|ZP_13168755.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU041]
gi|418606347|ref|ZP_13169628.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU057]
gi|418609800|ref|ZP_13172934.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU065]
gi|418616486|ref|ZP_13179410.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU120]
gi|418622181|ref|ZP_13184937.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU123]
gi|418628991|ref|ZP_13191507.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU127]
gi|418664830|ref|ZP_13226296.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU081]
gi|419768657|ref|ZP_14294773.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-250]
gi|419772571|ref|ZP_14298602.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-K]
gi|420182887|ref|ZP_14689020.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM049]
gi|420187578|ref|ZP_14693598.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM039]
gi|420197109|ref|ZP_14702833.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM020]
gi|420202069|ref|ZP_14707664.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM018]
gi|420214303|ref|ZP_14719582.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH05005]
gi|420216133|ref|ZP_14721355.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH05001]
gi|420219998|ref|ZP_14724988.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH04008]
gi|420227008|ref|ZP_14731781.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH05003]
gi|420229330|ref|ZP_14734036.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH04003]
gi|420231689|ref|ZP_14736334.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH051668]
gi|27315354|gb|AAO04489.1|AE016746_279 RNA-binding Sun protein [Staphylococcus epidermidis ATCC 12228]
gi|291319119|gb|EFE59489.1| RNA methyltransferase Sun [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329736213|gb|EGG72485.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU028]
gi|329736541|gb|EGG72807.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU045]
gi|341652421|gb|EGS76209.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU037]
gi|374402527|gb|EHQ73552.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU041]
gi|374406136|gb|EHQ77039.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU065]
gi|374408300|gb|EHQ79131.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU057]
gi|374410276|gb|EHQ81037.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU081]
gi|374820564|gb|EHR84640.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU120]
gi|374827556|gb|EHR91418.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU123]
gi|374834985|gb|EHR98616.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU127]
gi|383359198|gb|EID36628.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-K]
gi|383359483|gb|EID36906.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-250]
gi|394249350|gb|EJD94563.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM049]
gi|394256020|gb|EJE00956.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM039]
gi|394265916|gb|EJE10562.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM020]
gi|394270042|gb|EJE14565.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM018]
gi|394283668|gb|EJE27833.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH05005]
gi|394287005|gb|EJE30979.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH04008]
gi|394292583|gb|EJE36325.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH05001]
gi|394297509|gb|EJE41106.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH05003]
gi|394299096|gb|EJE42647.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH04003]
gi|394302231|gb|EJE45679.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH051668]
Length = 435
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 98/325 (30%), Positives = 167/325 (51%), Gaps = 34/325 (10%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEI 161
T +++ D L T++V GTI+ + LD+L+ K F + ++ + Q+L + Y+
Sbjct: 33 TNNINTVDKNLFTELVYGTIKRKYTLDYLL-------KPFIKTKIKSWVRQLLWMSLYQY 85
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD +P +A++ E V +AK GN+VNGILR ++ + LP E D +
Sbjct: 86 LYLDKIPNHAIIHEAVDIAKKRGGFHTGNIVNGILRTVMRTE------LPSFEDIDDTKK 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN-SRKGVTRADLVMQLN 279
R +A YS P W+V W + G E+ + + ++RAN SR + ++
Sbjct: 140 R-IAIQYSLPKWIVDHWVTHFGVEKTENIARSFLEPVTTTVRANISRDSIDSIISKLEQE 198
Query: 280 LLKVPHE----LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
V + LH+ +G+ V+ + KEG ++QD+S+ +V V++
Sbjct: 199 GYHVKKDDMLPFCLHI-------SGMP-VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDD 250
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
++D C+APGGK +MA LS +G V A DI++ ++ ++ + K ++N+ I+ D
Sbjct: 251 KVLDACSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQNIKKLKLNN-IKAFQHDAT 309
Query: 396 TFADNSTVKCDKVLLDAPCSGLGVL 420
D DK+L+DAPCSGLGVL
Sbjct: 310 EVYDKM---YDKILVDAPCSGLGVL 331
>gi|225868018|ref|YP_002743966.1| ribosomal RNA small subunit methyltransferase [Streptococcus equi
subsp. zooepidemicus]
gi|225701294|emb|CAW98294.1| putative ribosomal RNA small subunit methyltransferase
[Streptococcus equi subsp. zooepidemicus]
Length = 442
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 104/326 (31%), Positives = 169/326 (51%), Gaps = 33/326 (10%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ L D+D LVT+IV GTI + L+ L H + ++ + +L + Y++ L
Sbjct: 40 QSLSDKDKALVTEIVYGTISRKITLE---WYLAHYIEDRDRLDKWVYYLLMLSLYQLAYL 96
Query: 165 D-MPPYAVVDENVRLAKVALRP-GAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
D +P +A+V++ V LAK GA LVN +LR+L + PLP ++ R + +
Sbjct: 97 DKVPAHAIVNDAVNLAKARTHGRGADKLVNAVLRQL------TNKPLPDIKSIKR-KNKY 149
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
A YS PVW+V++ G++ A+ ++ SL SR + DL + + +K
Sbjct: 150 YAVAYSVPVWLVKKLIDQFGEKRAVAILE--------SLFVRSRASIRVTDLA-KFDEIK 200
Query: 283 --VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
E SL + + + G + + G +QDE++ LV +D Q + I+D
Sbjct: 201 QATGSEQSLLAETGLTKRAG--HFAASSYFINGDITIQDETSQLVAPTLDIQGQEMILDA 258
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT---- 396
C+APGGKT ++AS L+ G V A+D+ + +L ++NE AK V I T D R
Sbjct: 259 CSAPGGKTAHIASYLTS-GKVVALDLYEHKLALVNENAKRLGVADRIETKVLDAREVHKH 317
Query: 397 FADNSTVKCDKVLLDAPCSGLGVLSK 422
FA +S DK+L+DAPCSG+G++ +
Sbjct: 318 FAKDS---FDKILVDAPCSGIGLIRR 340
>gi|218961232|ref|YP_001741007.1| putative 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Candidatus
Cloacamonas acidaminovorans]
gi|167729889|emb|CAO80801.1| putative 16S rRNA m5C967
methyltransferase,S-adenosyl-L-methionine-dependent
[Candidatus Cloacamonas acidaminovorans str. Evry]
Length = 438
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 94/333 (28%), Positives = 163/333 (48%), Gaps = 21/333 (6%)
Query: 95 YVERTLGFRTKDLDD--RDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQ 152
Y + L R K L + D L ++V G I+ LD+++ D+K ++ + +
Sbjct: 20 YSDTLLHQRAKKLKNAGEDPALFYNLVKGVIKLYLKLDYILQQYV-DKKKYTDTDIKIKV 78
Query: 153 ILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPK 211
+L +G Y+++ L+ +P YA V+E V LAK P + VN +LR N L P+
Sbjct: 79 LLYMGLYQLLYLNSIPDYAAVNETVELAKTLFNPQVADFVNAVLR--------NYLRNPE 130
Query: 212 LEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR 271
+ + R +A +S P ++++W G+E L ++ N +P +R NS
Sbjct: 131 VSYPNEPALR-IAYEHSFPPELIKQWLDLWGEENTEYLAMFFNENPELHIRVNSTATTPE 189
Query: 272 A--DLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVV 329
+ N++ P + S + F +T V++ EG +VQD SA L+V ++
Sbjct: 190 KLKAYFAKRNIVITPSQASPMM--FHTAQTA--EVLEDVAFSEGYFSVQDTSAALIVELL 245
Query: 330 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRT 389
DPQ +S++D AAPGGK Y+A + G V A+D ++++L + A Q+ + I+
Sbjct: 246 DPQKEESVLDLFAAPGGKCSYIAERMDNTGEVIAVDKIPSKMKLLKQAANRLQLTN-IKM 304
Query: 390 IHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
+ D + + +VL+D PCSG GV +
Sbjct: 305 VVTDAFKYGPVAPA-FHRVLVDVPCSGWGVFGR 336
>gi|395238247|ref|ZP_10416185.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
gigeriorum CRBIP 24.85]
gi|394477951|emb|CCI86162.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
gigeriorum CRBIP 24.85]
Length = 443
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 109/358 (30%), Positives = 182/358 (50%), Gaps = 37/358 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L+ D L T IV GTI+++ L++ + L + T +EPLLL + Y+++ LD
Sbjct: 38 LNQTDTNLATKIVYGTIQYKILLEYQLKQLLKSKLTEKYLEPLLL----MSLYQLIFLDK 93
Query: 166 MPPYAVVDENVRLAKVALRPGAG--NLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
+P AV+DE +LAK + + LVNGILR L LP+++ L
Sbjct: 94 IPANAVLDEANKLAKAYGKSHSNGYKLVNGILRNFT----RKGLVLPEVK--QVGLVSYL 147
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
+ S P W+V+ + + G++ A ++ N + SLR ++ R ++ +LN
Sbjct: 148 SIKDSMPEWLVQYFIENWGEQRAETILASFNENAKNSLRISNL--ADRDKVLAELNEQGY 205
Query: 284 -PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
P + +L + I G + + L +G +QDE+A LV V D + ++D C+
Sbjct: 206 EPVDSNLATNSVIVAHGG---IAENSLFADGKVTIQDEAASLVADVFDLSGDEQVLDACS 262
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FA 398
APGGKT+ +A LS G V A+DI+ +L ++ + A+ V S I+TI D + F+
Sbjct: 263 APGGKTIQIAERLS-TGSVTALDIHPKKLNLVKQNAERMGVASRIKTIALDAKKTNTFFS 321
Query: 399 DNSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
D + D++L+DAPCSGLG+L R +RY K+ +++L + + +L
Sbjct: 322 DQ---QFDRILVDAPCSGLGLL----------RRKPEIRYGKSQKDLENLQQIQLAIL 366
>gi|238924695|ref|YP_002938211.1| sun protein [Eubacterium rectale ATCC 33656]
gi|238876370|gb|ACR76077.1| sun protein [Eubacterium rectale ATCC 33656]
Length = 469
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 93/320 (29%), Positives = 153/320 (47%), Gaps = 25/320 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L +D +T +V GTI + LD++I + M+P + +LR+ Y+I +D
Sbjct: 73 LSKQDRAFMTRLVDGTIEYMLQLDYIIDSFS--KTKVRKMKPFIRNLLRMSVYQIKYMDA 130
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P AV +E V+LAK VNG+LR + D Q L+
Sbjct: 131 VPDSAVCNEAVKLAKRHKFAQLSGFVNGVLRNIA-------------RNIDSVQFDTLSI 177
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVT---RADLVMQLNLLK 282
YS P W+V R+ G+++A ++ ++ + S+R N + RA L + +
Sbjct: 178 RYSMPQWIVDRFVAAYGEKKAEEIFKAFHNKSTISIRTNLTRCTPDELRATLEAEGVTVT 237
Query: 283 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
EL+ + V +G + ++GL VQD S+ LV P+ G ++D CA
Sbjct: 238 AVDELN-----YAFVISGFDYLNGLQSFRDGLFYVQDISSMLVAQTAAPKKGDYVIDVCA 292
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402
APGGK+ ++A L G G V+A D+ ++ ++ E H +N++ + D F +S
Sbjct: 293 APGGKSTHIAELLQGSGHVFARDLTDNKVDMIEENIDRHGLNNMSAEVW-DATVFDADSA 351
Query: 403 VKCDKVLLDAPCSGLGVLSK 422
K D ++ D PCSGLGVL +
Sbjct: 352 GKADILICDLPCSGLGVLGR 371
>gi|420165246|ref|ZP_14671950.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM088]
gi|394236413|gb|EJD81947.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM088]
Length = 435
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 98/325 (30%), Positives = 167/325 (51%), Gaps = 34/325 (10%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEI 161
T +++ D L T++V GTI+ + LD+L+ K F + ++ + Q+L + Y+
Sbjct: 33 TNNINTVDKNLFTELVYGTIKRKYTLDYLL-------KPFIKTKIKSWVRQLLWMSLYQY 85
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD +P +A++ E V +AK GN+VNGILR ++ + LP E D +
Sbjct: 86 LYLDKIPNHAIIHEAVDIAKKRGGFHTGNIVNGILRTVMRTE------LPSFEDIDDTKK 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN-SRKGVTRADLVMQLN 279
R +A YS P W+V W + G E+ + + ++RAN SR + ++
Sbjct: 140 R-IAIQYSLPKWIVDHWVTHFGVEKTENIARSFLEPVTTTVRANISRDSIDSIISKLEQE 198
Query: 280 LLKVPHE----LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
V + LH+ +G+ V+ + KEG ++QD+S+ +V V++
Sbjct: 199 GYHVKKDDMLPFCLHI-------SGMP-VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDD 250
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
++D C+APGGK +MA LS +G V A DI++ ++ ++ + K ++N+ I+ D
Sbjct: 251 KVLDACSAPGGKACHMAQILSPEGHVDATDIHEHKINLIKQNIKKLKLNN-IKAFQHDAT 309
Query: 396 TFADNSTVKCDKVLLDAPCSGLGVL 420
D DK+L+DAPCSGLGVL
Sbjct: 310 EVYDKM---YDKILVDAPCSGLGVL 331
>gi|414160518|ref|ZP_11416784.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
simulans ACS-120-V-Sch1]
gi|410878038|gb|EKS25927.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
simulans ACS-120-V-Sch1]
Length = 434
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 97/326 (29%), Positives = 172/326 (52%), Gaps = 32/326 (9%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFY 159
+ +L D L+T++V GT++ + LD+ + K F + ++ + ++L + Y
Sbjct: 30 LKENELSRADKGLLTELVYGTLKHQYTLDYYL-------KPFVKTKIKGWMRRLLWMSIY 82
Query: 160 EIVKLD-MPPYAVVDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGND 216
+ LD +P +A+++E V + K R G N +VNGILR ++ + LP P ND
Sbjct: 83 QYQYLDKIPDHAIINEAVEITK--QRGGLHNSKVVNGILRNMM----RSDLPNPADIEND 136
Query: 217 RAQARALATIYSHPVWMVRRWTKYLGQE--EAIKLMVWNNSDPSFSLRANSRKGVTRADL 274
+ + +A +YS P W+V+ W + G E EAI + P ++R N+ + T D
Sbjct: 137 QQR---IAIMYSLPKWIVKHWVTHFGLETTEAIAQSLLER--PGQTVRVNTHR-TTIEDA 190
Query: 275 VMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 334
+++L K +E+S D + + V+++ K+G ++QD+S+ V ++ P G
Sbjct: 191 IVRLE--KEDYEVSQDKDIHYCLHVSGRPVVESRAFKDGYVSIQDKSSMFVAEILAPVEG 248
Query: 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 394
++I+D C+APGGK A L G G V A DI++ ++ ++ + ++ +V H
Sbjct: 249 ENILDACSAPGGKACQTAELLKGSGHVDATDIHEHKIDLIEHNIRKLRLKNVTAFQHDAT 308
Query: 395 RTFADNSTVKCDKVLLDAPCSGLGVL 420
+ + K DK+L+DAPCSGLGVL
Sbjct: 309 KPY----DAKYDKILVDAPCSGLGVL 330
>gi|417645994|ref|ZP_12295879.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU144]
gi|329730006|gb|EGG66397.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU144]
Length = 393
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 98/325 (30%), Positives = 167/325 (51%), Gaps = 34/325 (10%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEI 161
T +++ D L T++V GTI+ + LD+L+ K F + ++ + Q+L + Y+
Sbjct: 33 TNNINTVDKNLFTELVYGTIKRKYTLDYLL-------KPFIKTKIKSWVRQLLWMSLYQY 85
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD +P +A++ E V +AK GN+VNGILR ++ + LP E D +
Sbjct: 86 LYLDKIPNHAIIHEAVDIAKKRGGFHTGNIVNGILRTVMRTE------LPSFEDIDDTKK 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN-SRKGVTRADLVMQLN 279
R +A YS P W+V W + G E+ + + ++RAN SR + ++
Sbjct: 140 R-IAIQYSLPKWIVDHWVTHFGVEKTENIARSFLEPVTTTVRANISRDSIDSIISKLEQE 198
Query: 280 LLKVPHE----LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
V + LH+ +G+ V+ + KEG ++QD+S+ +V V++
Sbjct: 199 GYHVKKDDMLPFCLHI-------SGMP-VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDD 250
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
++D C+APGGK +MA LS +G V A DI++ ++ ++ + K ++N+ I+ D
Sbjct: 251 KVLDACSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQNIKKLKLNN-IKAFQHDAT 309
Query: 396 TFADNSTVKCDKVLLDAPCSGLGVL 420
D DK+L+DAPCSGLGVL
Sbjct: 310 EVYDKM---YDKILVDAPCSGLGVL 331
>gi|218282589|ref|ZP_03488827.1| hypothetical protein EUBIFOR_01409 [Eubacterium biforme DSM 3989]
gi|218216460|gb|EEC89998.1| hypothetical protein EUBIFOR_01409 [Eubacterium biforme DSM 3989]
Length = 397
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 93/324 (28%), Positives = 156/324 (48%), Gaps = 50/324 (15%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
++D++D L T I GTI+ RY C C + + + P + +L + Y+++ LD
Sbjct: 29 EVDEKDRALATRIFYGTIQNYRY-----CKACWSKYVKNKLNPKMDVLLTMSTYQLLFLD 83
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P YA+V++ V +AK AG L N +L K+ ++ +N +A
Sbjct: 84 KVPSYAIVNDAVNIAKKINMKYAG-LTNAVLHKVKPIETDN-----------------MA 125
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
YS P W+ + WT GQE+A+ + ++ V + ++ N+L
Sbjct: 126 LKYSLPDWLYKMWTSQYGQEKALVM---------------AKASVNILPMYVRRNVLNT- 169
Query: 285 HELSLHLDEFIRVKTGL-----QNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 339
+E LD F+RV+ L + ++G + QDE + + VDPQ + I+D
Sbjct: 170 NESDFDLDMFVRVQDALYIYKGNDYFHHDYYQKGYMSAQDEGSFEIAKFVDPQENERILD 229
Query: 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 399
CCAAPG K++ MA + +G + A D++ R ++ AK I IHA ++ +
Sbjct: 230 CCAAPGTKSMAMAEMMHNKGHIDAYDLHAHRKDLIENDAK----RLGIDIIHAGVQDATE 285
Query: 400 -NSTVKCDKVLLDAPCSGLGVLSK 422
S+ D++L D PCSG GVLS+
Sbjct: 286 FKSSNMYDRILCDVPCSGYGVLSR 309
>gi|258508664|ref|YP_003171415.1| tRNA and rRNA cytosine-C5-methytransferase [Lactobacillus rhamnosus
GG]
gi|385828325|ref|YP_005866097.1| RNA methyltransferase [Lactobacillus rhamnosus GG]
gi|257148591|emb|CAR87564.1| tRNA and rRNA cytosine-C5-methytransferase (sun protein)
[Lactobacillus rhamnosus GG]
gi|259649970|dbj|BAI42132.1| RNA methyltransferase [Lactobacillus rhamnosus GG]
Length = 446
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 113/384 (29%), Positives = 177/384 (46%), Gaps = 48/384 (12%)
Query: 85 GKGSGDNEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKT 142
GKG GY TL LD RD L+T++V G I+ + LD+L+ + +
Sbjct: 19 GKG------GYSNLTLDHVITKYQLDSRDAGLLTNVVYGVIQHQLTLDYLLAPFVKNRQ- 71
Query: 143 FSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLL 201
++ + +L+ Y++ LD +P AV ++ +AK G V G+LR+
Sbjct: 72 ---LDTWVRCLLQTAVYQLQYLDKVPARAVFFDSTEIAKKLGHQGVAKFVTGVLRQ---- 124
Query: 202 KDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSL 261
+ P P + + LA S PVW+V++ LG+ + K++ N S+
Sbjct: 125 AQRSGYPDPMTIADP---IQRLAITSSTPVWLVKKLQAQLGETKTAKILAAINQPAHASI 181
Query: 262 RANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLK------EGLC 315
R N+ K A LLK L E GL V G L +GL
Sbjct: 182 RVNTTKTTAAA-------LLKALQPQFPALKESPLTPVGL--VAPGGHLAGTREFADGLY 232
Query: 316 AVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRI 373
+QDES+ LV +D QPG ++D CAAPGGKT ++A L G V A+D++ ++R+
Sbjct: 233 TMQDESSMLVAPSLDVQPGDQVLDACAAPGGKTTHIAQYLDPDQGGRVTALDLHANKVRL 292
Query: 374 LNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAPCSGLGVLSKTCVGIGDWRI 432
+ + AK ++ + D R A N + DK+L+DAPCSGLG++ R
Sbjct: 293 IQQNAKRLDLDDRVAAQVMDARQVAANFAAESFDKILVDAPCSGLGLI----------RR 342
Query: 433 WKSLRYCKTSFLMQHLCETKYLLL 456
++Y K +QHL + + +L
Sbjct: 343 KPEIKYTKQPEDLQHLQKIQLAIL 366
>gi|57866755|ref|YP_188366.1| sun protein [Staphylococcus epidermidis RP62A]
gi|242242499|ref|ZP_04796944.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
W23144]
gi|418327694|ref|ZP_12938836.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis 14.1.R1.SE]
gi|418612965|ref|ZP_13175986.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU117]
gi|418626770|ref|ZP_13189366.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU126]
gi|418631938|ref|ZP_13194382.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU128]
gi|420175015|ref|ZP_14681460.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM061]
gi|420192761|ref|ZP_14698618.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM023]
gi|57637413|gb|AAW54201.1| sun protein [Staphylococcus epidermidis RP62A]
gi|242234073|gb|EES36385.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
W23144]
gi|365232724|gb|EHM73710.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis 14.1.R1.SE]
gi|374817275|gb|EHR81460.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU117]
gi|374831314|gb|EHR95056.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU126]
gi|374833607|gb|EHR97282.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU128]
gi|394244301|gb|EJD89646.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM061]
gi|394260577|gb|EJE05386.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM023]
Length = 435
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 166/320 (51%), Gaps = 24/320 (7%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEI 161
T +++ D L T++V GT++ + LD+L+ K F + ++ + Q+L + Y+
Sbjct: 33 TNNINTVDKNLFTELVYGTLKRKYTLDYLL-------KPFIKTKIKSWVRQLLWMSLYQY 85
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD +P +A++ E V +AK GN+VNGILR ++ + LP E D +
Sbjct: 86 LYLDKIPNHAIIHEAVDIAKKRGGYHTGNIVNGILRTVMRTE------LPSFEDIDDTKK 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R +A YS P W+V W + G E+ + + ++RAN +G D ++
Sbjct: 140 R-IAIQYSLPKWIVDHWVTHFGIEKTENIAQSFLEPVATTVRANISRG--SIDSIISKLE 196
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ H + F +GL V+ + KEG ++QD+S+ +V V++ ++D
Sbjct: 197 QEGYHVKKDDMLPFCLHISGLP-VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDDKVLDA 255
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
C+APGGK +MA LS +G V A DI++ ++ ++ + K ++N+ I+ D D
Sbjct: 256 CSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQNIKKLKLNN-IKAFQHDATEVYDK 314
Query: 401 STVKCDKVLLDAPCSGLGVL 420
DK+L+DAPCSGLGVL
Sbjct: 315 M---YDKILVDAPCSGLGVL 331
>gi|124023762|ref|YP_001018069.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9303]
gi|123964048|gb|ABM78804.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9303]
Length = 450
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 110/362 (30%), Positives = 173/362 (47%), Gaps = 29/362 (8%)
Query: 65 AVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIR 124
A L++ GA+AD+ +ER L R + D LV ++ G IR
Sbjct: 24 AWELLQAVAAGAYADV--------------ALERAL--RQNPMSGADRGLVMELAYGAIR 67
Query: 125 WRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVAL 183
R++LD + L + P+L +L +G Y+I+++ +P A V+ +V LAK
Sbjct: 68 QRQWLDAWLDRL--GKVPACKQPPVLRWLLHLGLYQILRMQRIPAAAAVNTSVELAKTGK 125
Query: 184 RPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQ 243
+VNGILR + +D + LE D A AR LA S P+W+V + + G+
Sbjct: 126 LARLAPVVNGILRAALRARDAGMV---LLEPEDSA-AR-LAQAESLPLWLVEQLLVWRGE 180
Query: 244 EEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQN 303
A +N P+ LR N R+ +R ++ + L + V + + V +
Sbjct: 181 VGAELFARASNQVPTLDLRINRRR-TSRENVRLALEAIGVESTPIESCPDGLMVTGSAGD 239
Query: 304 VIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYA 363
+ Q ++G VQD SA LV ++ PQPG I+D CAAPGGK ++ + G G V+A
Sbjct: 240 LSQWPGYQQGHWCVQDRSAQLVAPLLGPQPGDRILDACAAPGGKATHLVELMGGSGEVWA 299
Query: 364 IDINKGRLRILNETAKLHQVNSVIRTIHAD---LRTFADNSTVKCDKVLLDAPCSGLGVL 420
+D + GRL+ L E A + + AD L + ++L+DAPCSGLG L
Sbjct: 300 VDRSAGRLKRLAENAA-RLGGDCLHALVADATNLLAVKPSWRGSFQRILVDAPCSGLGTL 358
Query: 421 SK 422
++
Sbjct: 359 AR 360
>gi|253580147|ref|ZP_04857414.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848666|gb|EES76629.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 450
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 100/329 (30%), Positives = 164/329 (49%), Gaps = 49/329 (14%)
Query: 114 LVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVV 172
+T + GT+ +R +D++I + + + M+P++ +ILR Y+I +D +P AV
Sbjct: 46 FITRVCEGTLEYRILIDYIID--SYSKVSVDKMKPVIREILRSAVYQIRFMDSVPDSAVC 103
Query: 173 DENVRLAK----VALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+E V+LA+ +L+P VNG+LR + ++ +L LP E N R L+ YS
Sbjct: 104 NEAVKLAQRKGFYSLKP----FVNGVLRTIA--REWKNLKLPSREEN---PVRYLSVRYS 154
Query: 229 HPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKG---------VTRADLVMQLN 279
P +V RW + G+E+ K++ ++ ++R + K V + V
Sbjct: 155 MPETLVNRWLEDYGEEKTEKILTDFLTEKPITVRCRTHKYPQKEIYESLVDQGVEVKPAP 214
Query: 280 LLKVPHELS-----LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 334
L +E+S L LD FI +G VQD S+ LV + DPQ G
Sbjct: 215 YLPYAYEISNYNHILALDAFI----------------QGKIQVQDVSSMLVAEIADPQKG 258
Query: 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA-D 393
++D CAAPGGK+L++A + G V A DI++ ++ ++ E +H+ + + H D
Sbjct: 259 DYVIDMCAAPGGKSLHVADKMGDYGTVDARDISQYKVDMIEEN--IHRTDCINVQAHVMD 316
Query: 394 LRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
F +S +K D VL D PCSG GV+ K
Sbjct: 317 ATVFDVDSELKADVVLADVPCSGYGVIGK 345
>gi|420163445|ref|ZP_14670192.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM095]
gi|420167574|ref|ZP_14674226.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM087]
gi|394235134|gb|EJD80708.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM095]
gi|394237602|gb|EJD83088.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM087]
Length = 435
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 100/331 (30%), Positives = 172/331 (51%), Gaps = 46/331 (13%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEI 161
T +++ D L T++V GTI+ + LD+L+ K F + ++ + Q+L + Y+
Sbjct: 33 TNNINTVDKNLFTELVYGTIKRKYTLDYLL-------KPFIKTKIKSWVRQLLWMSLYQY 85
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD +P +A++ E V +AK GN+VNGILR ++ + LP LE D +
Sbjct: 86 LYLDKIPNHAIIHEAVDIAKKRGGYHTGNIVNGILRTVMRTE------LPSLEDIDDTKK 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R +A YS P W+V W + G E+ + + ++RAN ++RA + ++
Sbjct: 140 R-IAIQYSLPKWIVDHWVTHFGVEKTENIARSFLEPVATTVRAN----ISRASIDSIISK 194
Query: 281 LK-----------VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVV 329
L+ +P+ LH+ +G+ V+ + KEG ++QD+S+ +V V+
Sbjct: 195 LEQEGYHVKKDDMLPY--CLHI-------SGMP-VVNSNAFKEGYISIQDKSSMMVAYVM 244
Query: 330 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRT 389
+ ++D C+APGGK +MA LS +G V A DI++ ++ ++ + K ++N+ I
Sbjct: 245 NLGRDDKVLDACSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQNIKKLKLNN-INA 303
Query: 390 IHADLRTFADNSTVKCDKVLLDAPCSGLGVL 420
D D DK+L+DAPCSGLGVL
Sbjct: 304 FQHDATEVYDKM---YDKILVDAPCSGLGVL 331
>gi|291526150|emb|CBK91737.1| ribosomal RNA small subunit methyltransferase RsmB [Eubacterium
rectale DSM 17629]
Length = 469
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 93/320 (29%), Positives = 153/320 (47%), Gaps = 25/320 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L +D +T +V GTI + LD++I + M+P + +LR+ Y+I +D
Sbjct: 73 LSKQDRAFMTRLVDGTIEYMLQLDYIIDSFS--KTKVRKMKPFIRNLLRMSVYQIKYMDA 130
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P AV +E V+LAK VNG+LR + D Q L+
Sbjct: 131 VPDSAVCNEAVKLAKRHKFAQLSGFVNGVLRNIA-------------RNIDSVQFDTLSI 177
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVT---RADLVMQLNLLK 282
YS P W+V R+ G+++A ++ ++ + S+R N + RA L + +
Sbjct: 178 RYSMPQWIVDRFVAAYGEKKAEEIFKAFHNKSTISIRTNLTRCTPDELRATLEAEGVTVT 237
Query: 283 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
EL+ + V +G + ++GL VQD S+ LV P+ G ++D CA
Sbjct: 238 AVDELN-----YAFVISGFDYLNGLQSFRDGLFYVQDISSMLVAQTAAPKKGDYVIDVCA 292
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402
APGGK+ ++A L G G V+A D+ ++ ++ E H +N++ + D F +S
Sbjct: 293 APGGKSTHIAELLRGSGHVFARDLTDNKVDMIEENIDRHGLNNMSAEVW-DATVFDADSA 351
Query: 403 VKCDKVLLDAPCSGLGVLSK 422
K D ++ D PCSGLGVL +
Sbjct: 352 GKADILICDLPCSGLGVLGR 371
>gi|334880649|emb|CCB81412.1| putative rRNA methylase [Lactobacillus pentosus MP-10]
Length = 447
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 102/325 (31%), Positives = 162/325 (49%), Gaps = 27/325 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDH-LICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+D RD+ L+T++V G I+ R L+ L + H + ++P + ++L Y+ LD
Sbjct: 38 MDRRDINLLTNMVYGVIQHRLTLEFWLKPFVRHPHQ----LDPWVRELLLSALYQWQYLD 93
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLP-LPKLEGNDRAQARAL 223
+P AV +E + +AKV PG V G+L ++ D + LP +E D L
Sbjct: 94 KIPQRAVFNETIEIAKVKGHPGIRRFVTGVLHQM----DRSGLPAFDTIEDPDER----L 145
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
+ YS PVW+++ + LG + ++ N SLR N+ T +D+ L +
Sbjct: 146 SVTYSMPVWLIQELRQQLGATKMEAIIASLNQPAKQSLRVNTALS-TVSDVTTALTNDGL 204
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
E S + V G I ++ G+ VQDESA LVV ++ QPG ++D CAA
Sbjct: 205 TVEPSKISPLGLVVTDG--QAINTEAMRYGMFTVQDESAQLVVPALNVQPGDQVLDACAA 262
Query: 344 PGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR----TF 397
PGGKT +A+ L G V A+DI+ ++R++ + A V + D R F
Sbjct: 263 PGGKTTQIAAELDADAGGEVVALDIHANKVRLIGQNAARMHVADRVAATELDARKVQTQF 322
Query: 398 ADNSTVKCDKVLLDAPCSGLGVLSK 422
D S D++L+DAPCSGLG++ +
Sbjct: 323 DDES---FDRILVDAPCSGLGLMRR 344
>gi|229552470|ref|ZP_04441195.1| RNA methyltransferase [Lactobacillus rhamnosus LMS2-1]
gi|258539841|ref|YP_003174340.1| tRNA and rRNA cytosine-C5-methytransferase (sun protein)
[Lactobacillus rhamnosus Lc 705]
gi|385835493|ref|YP_005873267.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
rhamnosus ATCC 8530]
gi|229314207|gb|EEN80180.1| RNA methyltransferase [Lactobacillus rhamnosus LMS2-1]
gi|257151517|emb|CAR90489.1| tRNA and rRNA cytosine-C5-methytransferase (sun protein)
[Lactobacillus rhamnosus Lc 705]
gi|355394984|gb|AER64414.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
rhamnosus ATCC 8530]
Length = 446
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 114/384 (29%), Positives = 176/384 (45%), Gaps = 48/384 (12%)
Query: 85 GKGSGDNEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKT 142
GKG GY TL LD RD L+T+IV G I+ + LD+L+ +
Sbjct: 19 GKG------GYSNLTLDHVITKYQLDSRDAGLLTNIVYGVIQHQLTLDYLLAPFVKTRQ- 71
Query: 143 FSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLL 201
++ + +L+ Y++ LD +P AV ++ +AK G V G+LR+
Sbjct: 72 ---LDTWVRCLLQTSVYQLQYLDKVPARAVFFDSTEIAKKLGHQGVAKFVTGVLRQ---- 124
Query: 202 KDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSL 261
+ P P + + LA S PVW+V++ LG+ + K++ N S+
Sbjct: 125 AQRSGYPDPMTIADP---IQRLAITSSTPVWLVKKLQAQLGETKTAKILAAINQPAHASI 181
Query: 262 RANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLK------EGLC 315
R N+ K A LLK L E GL V G L +GL
Sbjct: 182 RVNTTKTTAAA-------LLKALQPQFPALKESPLTPVGL--VAPGGHLAGTREFADGLY 232
Query: 316 AVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRI 373
+QDES+ LV +D QPG ++D CAAPGGKT ++A L G V A+D++ ++R+
Sbjct: 233 TMQDESSMLVAPSLDVQPGDQVLDACAAPGGKTTHIAQYLDPDQGGRVTALDLHANKVRL 292
Query: 374 LNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAPCSGLGVLSKTCVGIGDWRI 432
+ + AK ++ + D R A N + DK+L+DAPCSGLG++ R
Sbjct: 293 IQQNAKRLDLDDRVAAQVMDARQVAANFAAESFDKILVDAPCSGLGLI----------RR 342
Query: 433 WKSLRYCKTSFLMQHLCETKYLLL 456
++Y K +QHL + + +L
Sbjct: 343 KPEIKYTKQPEDLQHLQKIQLAIL 366
>gi|418070840|ref|ZP_12708115.1| 16S rRNA methyltransferase B [Lactobacillus rhamnosus R0011]
gi|423078824|ref|ZP_17067501.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
rhamnosus ATCC 21052]
gi|357540260|gb|EHJ24277.1| 16S rRNA methyltransferase B [Lactobacillus rhamnosus R0011]
gi|357549112|gb|EHJ30960.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
rhamnosus ATCC 21052]
Length = 446
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 114/384 (29%), Positives = 176/384 (45%), Gaps = 48/384 (12%)
Query: 85 GKGSGDNEMGYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKT 142
GKG GY TL LD RD L+T+IV G I+ + LD+L+ +
Sbjct: 19 GKG------GYSNLTLDHVITKYQLDSRDAGLLTNIVYGVIQHQLTLDYLLAPFVKTRQ- 71
Query: 143 FSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLL 201
++ + +L+ Y++ LD +P AV ++ +AK G V G+LR+
Sbjct: 72 ---LDTWVRCLLQTAVYQLQYLDKVPARAVFFDSTEIAKKLGHQGVAKFVTGVLRQ---- 124
Query: 202 KDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSL 261
+ P P + + LA S PVW+V++ LG+ + K++ N S+
Sbjct: 125 AQRSGYPDPMTIADP---IQRLAITSSTPVWLVKKLQAQLGETKTAKILAAINQPAHASI 181
Query: 262 RANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLK------EGLC 315
R N+ K A LLK L E GL V G L +GL
Sbjct: 182 RVNTTKTTAAA-------LLKALQPQFPALKESPLTPVGL--VAPGGHLAGTREFADGLY 232
Query: 316 AVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRI 373
+QDES+ LV +D QPG ++D CAAPGGKT ++A L G V A+D++ ++R+
Sbjct: 233 TMQDESSMLVAPSLDVQPGDQVLDACAAPGGKTTHIAQYLDPDQGGRVTALDLHANKVRL 292
Query: 374 LNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAPCSGLGVLSKTCVGIGDWRI 432
+ + AK ++ + D R A N + DK+L+DAPCSGLG++ R
Sbjct: 293 IQQNAKRLDLDDRVAAQVMDARQVAANFAAESFDKILVDAPCSGLGLI----------RR 342
Query: 433 WKSLRYCKTSFLMQHLCETKYLLL 456
++Y K +QHL + + +L
Sbjct: 343 KPEIKYTKQPEDLQHLQKIQLAIL 366
>gi|251810647|ref|ZP_04825120.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
BCM-HMP0060]
gi|282876351|ref|ZP_06285218.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis SK135]
gi|417913398|ref|ZP_12557065.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU109]
gi|418624473|ref|ZP_13187148.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU125]
gi|420169761|ref|ZP_14676339.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM070]
gi|420172783|ref|ZP_14679281.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM067]
gi|420194045|ref|ZP_14699874.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM021]
gi|420209504|ref|ZP_14714941.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM003]
gi|421607281|ref|ZP_16048527.1| 16S rRNA methyltransferase B [Staphylococcus epidermidis AU12-03]
gi|251805807|gb|EES58464.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
BCM-HMP0060]
gi|281295376|gb|EFA87903.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis SK135]
gi|341655680|gb|EGS79404.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU109]
gi|374827702|gb|EHR91563.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU125]
gi|394241460|gb|EJD86874.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM067]
gi|394243061|gb|EJD88435.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM070]
gi|394266743|gb|EJE11368.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM021]
gi|394278951|gb|EJE23263.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM003]
gi|406657073|gb|EKC83466.1| 16S rRNA methyltransferase B [Staphylococcus epidermidis AU12-03]
Length = 435
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 97/325 (29%), Positives = 167/325 (51%), Gaps = 34/325 (10%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEI 161
T +++ D L T++V GTI+ + LD+L+ K F + ++ + Q+L + Y+
Sbjct: 33 TNNINTVDKNLFTELVYGTIKRKYSLDYLL-------KPFIKTKIKSWVRQLLWMSLYQY 85
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD +P +A++ E V +AK GN+VNG+LR ++ + LP E D +
Sbjct: 86 LYLDKIPNHAIIHEAVDIAKKRGGYHTGNIVNGVLRTVMRTE------LPSFEDIDDTKK 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN-SRKGVTRADLVMQLN 279
R +A YS P W+V W + G E+ + + ++RAN SR + ++
Sbjct: 140 R-IAIQYSLPKWIVDHWVTHFGVEKTENIARSFLEPVTTTVRANISRDSIDSIISKLEQE 198
Query: 280 LLKVPHE----LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
V + LH+ +G+ V+ + KEG ++QD+S+ +V V++
Sbjct: 199 GYHVKKDDMLPFCLHI-------SGMP-VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDD 250
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
++D C+APGGK +MA LS +G V A DI++ ++ ++ + K ++N+ I+ D
Sbjct: 251 KVLDACSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQNIKKLKLNN-IKAFQHDAT 309
Query: 396 TFADNSTVKCDKVLLDAPCSGLGVL 420
D DK+L+DAPCSGLGVL
Sbjct: 310 EVYDKM---YDKILVDAPCSGLGVL 331
>gi|313891936|ref|ZP_07825537.1| ribosomal RNA small subunit methyltransferase B [Dialister
microaerophilus UPII 345-E]
gi|313119579|gb|EFR42770.1| ribosomal RNA small subunit methyltransferase B [Dialister
microaerophilus UPII 345-E]
Length = 448
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 94/332 (28%), Positives = 166/332 (50%), Gaps = 36/332 (10%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F++ L RD L+T++V G R YL +++ L + ++ + + + +L +G Y++
Sbjct: 37 FKSHKLLSRDKALITELVYGICRKCNYLQYIVEKLSN--RSINKIHKSVRILLYLGLYQL 94
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKD--NNSLPLPKLEGNDRA 218
+ LD +P A V+E V+L K G VN ILR + K N+ L K E
Sbjct: 95 IYLDKIPESAAVNETVKLTKKITHQGNVRFVNAILRNFLRKKAEINDFSKLSKFE----- 149
Query: 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL 278
L+ IY+ P+W++++W K G + +++ N + +R N K +T DL+
Sbjct: 150 ---KLSLIYNQPIWLIQKWNKDYGINKTKEILQAFNLPENLFVRCNELK-ITTNDLIKIF 205
Query: 279 NLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 338
+ K+ + + +K G+ N+ + LL++G +Q S+ + +DP+P + ++
Sbjct: 206 DENKIEYSGVENFPNIFLIKNGV-NLFKTDLLEKGYIFIQSISSIIPAYALDPKPYEKVL 264
Query: 339 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNE----------TAKLHQVNSVIR 388
D CAAPG KT +A + +G + A D+ +++++ E T KL ++
Sbjct: 265 DMCAAPGSKTTQIAQLMDNKGSIDAWDLYPHKIKLIEENINRLGVKIVTPKLQDATKLLP 324
Query: 389 TIHADLRTFADNSTVKCDKVLLDAPCSGLGVL 420
T++ + DKVLLDAPCSGLGVL
Sbjct: 325 TLNE-----------QYDKVLLDAPCSGLGVL 345
>gi|309803103|ref|ZP_07697200.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners LactinV 11V1-d]
gi|315653701|ref|ZP_07906621.1| RNA methyltransferase Sun [Lactobacillus iners ATCC 55195]
gi|308164611|gb|EFO66861.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners LactinV 11V1-d]
gi|315489063|gb|EFU78705.1| RNA methyltransferase Sun [Lactobacillus iners ATCC 55195]
Length = 437
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 105/356 (29%), Positives = 179/356 (50%), Gaps = 44/356 (12%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L T IV GT++++ YL++ + L + + PLLL + Y+ LD +P
Sbjct: 40 DKALTTQIVYGTVQYKLYLEYQLKSLVQTKLKEDYLWPLLL----MSAYQYFFLDKIPTA 95
Query: 170 AVVDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIY 227
++VDE +LAK G+ + LVNGILR LV + LP ++ + ++ Y
Sbjct: 96 SIVDEANKLAKSYSPKGSQSYRLVNGILRSLV--RRGEILP------EEKDAVKYMSIKY 147
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHEL 287
S+P W+V+ + G+ + I ++ N S+R +++ D ++ K+ E
Sbjct: 148 SYPQWLVKYCLDHFGKTKTISILQAGNMPSVNSIRI---ADMSKKDEILH----KLATEY 200
Query: 288 SLHLDEFIRVKTGLQN--VIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ + L + + + L K+GL +QD +A LVV + + + ++D C+APG
Sbjct: 201 KISISNLTNHNVNLDHGSITNSQLFKDGLITIQDSAASLVVDAFNFKGDEKVLDACSAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNET-AKLHQVNSVIRTIHADLRT----FADN 400
GKT +A L+ G V+A+DI++ +L ++ +T +LHQ +I D R F D
Sbjct: 261 GKTAQIAEYLTT-GKVFALDIHQKKLNLVKQTLNRLHQDQKLIMKA-LDARKVNEYFFDQ 318
Query: 401 STVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
+ DK+L+DAPCSGLG++ R +RY K ++HL E +Y +L
Sbjct: 319 ---QFDKILVDAPCSGLGLI----------RRKPEVRYEKQMEDLKHLSEIQYNIL 361
>gi|409095981|ref|ZP_11216005.1| tRNA/RNA cytosine-C5-methylase [Thermococcus zilligii AN1]
Length = 451
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 147/301 (48%), Gaps = 22/301 (7%)
Query: 124 RWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVAL 183
+WR +D +I + T ++P L +LRIG +EI + P D +R+ K
Sbjct: 59 KWRAKIDFIINSVLKG-STVEDLDPYLANLLRIGTFEIHFRKVSPAIATDSIIRVVKEKF 117
Query: 184 RPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQ 243
VN ++ + K + L +L+ DR + L+ +SHP W V + G
Sbjct: 118 DFSRAKFVNALMHSIE--KFDVEKALERLKEKDRIEW--LSVRFSHPRWYVEYVIELFGY 173
Query: 244 EEAIKLMVWNNSDPSFSLRANSRK-GVTRADLVMQLN-----LLKVPHELSLHLDEFIRV 297
EEA++L++ NN + +RAN+ K V ++ N L VP + ++V
Sbjct: 174 EEAVRLLLSNNKPQRYYVRANTLKTDVDSLREYLEENGVRTALTPVP--------DVLKV 225
Query: 298 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSG 357
V + K+G +QD ++ V V+ P+PG+ ++D AAPG KT + A+ +
Sbjct: 226 LEYETPVTRLDWYKQGKFVIQDLASAYVAHVLAPEPGERVLDLAAAPGSKTFHAAALMEN 285
Query: 358 QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGL 417
+G + A+D + RL + E KL + +V R +HAD ++F D DK++LDAPCS
Sbjct: 286 RGEIVAVDYSYDRLMRMKEKMKLLGIENV-RLVHADGQSFRDKEGF--DKIILDAPCSSS 342
Query: 418 G 418
G
Sbjct: 343 G 343
>gi|377556855|ref|ZP_09786534.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
gastricus PS3]
gi|376167285|gb|EHS86138.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
gastricus PS3]
Length = 443
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 98/324 (30%), Positives = 164/324 (50%), Gaps = 27/324 (8%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
DL+D D RLVT++V G ++ + L++ + +K + + LLL L Y+ LD
Sbjct: 36 DLNDADQRLVTNLVYGVLQHQITLEYWLAPFIKGKKVAAWVRTLLLMTL----YQYHYLD 91
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQARA 222
+P +A +E + +AK PG V G+ ++ + D N++ P +
Sbjct: 92 RIPDWAATNEAIEIAKRHGNPGIRKFVTGVCHAILRQGVADLNTIKDP---------IQR 142
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
L+ + S P W++ + + G + + V N + SLR N+ T A + +L
Sbjct: 143 LSVVASLPQWLIEKLSDQYGMQVTKAISVAVNQPANQSLRVNTNLTNTEA-VQAELETAG 201
Query: 283 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
+LS D +K+G +V + KEG +QDESA L V + +P ++D CA
Sbjct: 202 FEVKLSPLADNAFIIKSG--SVTETTAFKEGRITIQDESAMLAVESMHLKPDDLVLDACA 259
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FA 398
APGGKT+ +A L+ G V A+DI+ +++++ + A+ QV I+ + D R FA
Sbjct: 260 APGGKTVQIAENLTT-GKVVALDIHAHKVKLIEQNAQRMQVADRIQALQLDARKVDERFA 318
Query: 399 DNSTVKCDKVLLDAPCSGLGVLSK 422
D + DK+L+DAPCSG G+L +
Sbjct: 319 DET---FDKILVDAPCSGFGLLRR 339
>gi|319947546|ref|ZP_08021776.1| RNA methyltransferase Sun [Streptococcus australis ATCC 700641]
gi|319746234|gb|EFV98497.1| RNA methyltransferase Sun [Streptococcus australis ATCC 700641]
Length = 440
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 182/377 (48%), Gaps = 47/377 (12%)
Query: 52 NLNLEVSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRD 111
NL ++ R V+ L I GAF+++ KK G L D D
Sbjct: 3 NLVNKMQTAREVALSTLGEIFQDGAFSNISLKKSLGKAT----------------LSDVD 46
Query: 112 LRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYA 170
LVT+IV GT+ + L+ + D ++P + +L + Y+ V L+ +P +A
Sbjct: 47 KSLVTEIVYGTVSRKLTLEWYLSHFVADR---DQVDPWIYHLLLMSLYQFVYLEKIPLHA 103
Query: 171 VVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHP 230
VV E V LAK + G+ VN +LRK+ L++ LP ++ R R L+ YS P
Sbjct: 104 VVHEAVELAK-QRKKGSEKYVNALLRKM--LREE----LPSIDQIKRINKR-LSIRYSLP 155
Query: 231 VWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLH 290
VW+V++ G+E AI + SL ++ V DL + ++ + L
Sbjct: 156 VWLVKKLMDEYGEERAIAIFE--------SLYVRNKASVRVVDLDKKEDIKE-----QLQ 202
Query: 291 LDEFIRVKTGL--QNVIQAG--LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 346
+ + T L +N AG K+G +QDE++ LV ++ QP ++D CAAPGG
Sbjct: 203 ASDSLLASTALVKENGYFAGSDYFKQGKLTIQDETSQLVAPALEVQPSDQVLDACAAPGG 262
Query: 347 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL-RTFADNSTVKC 405
KT ++AS L G V A+D+ +L+++ E A+ V I+T D + F
Sbjct: 263 KTTHLASYLV-DGQVTALDLYDHKLQLIQENAERLGVADKIQTKKLDASKVFEAFGADAF 321
Query: 406 DKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG+G++ +
Sbjct: 322 DKILVDAPCSGIGLIRR 338
>gi|363891053|ref|ZP_09318336.1| hypothetical protein HMPREF9628_00820 [Eubacteriaceae bacterium
CM5]
gi|361962020|gb|EHL15169.1| hypothetical protein HMPREF9628_00820 [Eubacteriaceae bacterium
CM5]
Length = 436
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 95/324 (29%), Positives = 166/324 (51%), Gaps = 15/324 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F+ DLD +T IV G + YLD+ I + + FS + IL + F+EI
Sbjct: 30 FKNIDLDYEMRGFITYIVYGVLSNINYLDYFIK--QYSDIAFSKISKKAKLILEMAFFEI 87
Query: 162 VKLDMP-PYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPK-LEGND-RA 218
+ ++ YA V+ENV+L K A + VN +LRK D N++ + K E +D +
Sbjct: 88 IFMNSSVNYASVNENVKLVK-KYDNRAKSFVNAVLRKFT--SDENNINIAKNYEFSDVKE 144
Query: 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLV-MQ 277
+ + T YS ++ +R E +L+ P +R N K D+ ++
Sbjct: 145 DVKYILTRYSVSEYIAQRLLDNYKIEFTQELLRSMADTPDIFIRGNRLK----TDIYDLK 200
Query: 278 LNLLKVPHELSLHLDEFIRVK-TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 336
NL K+ ++ + +E + V +++ + + K+GL +VQD ++ V V+ P+ +
Sbjct: 201 TNLQKLGNKFDIIDEENMIVSLKNFKDISKNDMYKKGLFSVQDYASMKTVLVLSPKSYED 260
Query: 337 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396
++D CAAPGGK+++MA + +G + ++DI+ +L++L E K ++ +I+T D
Sbjct: 261 VLDICAAPGGKSVFMAELMENKGSITSLDISSKKLKLLEEQTKRLGID-IIKTYVNDATI 319
Query: 397 FADNSTVKCDKVLLDAPCSGLGVL 420
+ K DKVL D PCSG+G+L
Sbjct: 320 YKSEYKNKFDKVLCDVPCSGIGIL 343
>gi|229098334|ref|ZP_04229281.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock3-29]
gi|229117351|ref|ZP_04246729.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock1-3]
gi|228666251|gb|EEL21715.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock1-3]
gi|228685232|gb|EEL39163.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock3-29]
Length = 354
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 87/259 (33%), Positives = 137/259 (52%), Gaps = 14/259 (5%)
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL-EGNDRAQARALA 224
MP A + E V +AK G +VNG+LR + +P L E D + A+A
Sbjct: 1 MPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPSLDEIKDPVERLAIA 54
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
T SHPVW+V+ W G E A K+ N P + R N K VT + + L +
Sbjct: 55 T--SHPVWLVQDWASEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAIELLASEGIE 111
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
+ D+ I+++ G NV K+G ++QDES+ LV +DP G++++D CAAP
Sbjct: 112 AKSGDLSDDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALDPNEGETVLDSCAAP 169
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STV 403
GGKT ++A L G G V ++D++ ++R++ + A+ + + I T D R ++ +
Sbjct: 170 GGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLEN-IETKALDARKVQEHFANE 228
Query: 404 KCDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 229 TFDKILVDAPCSGFGVIRR 247
>gi|259501638|ref|ZP_05744540.1| RNA methyltransferase Sun [Lactobacillus iners DSM 13335]
gi|302191155|ref|ZP_07267409.1| SUN protein [Lactobacillus iners AB-1]
gi|312874589|ref|ZP_07734613.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners LEAF 2053A-b]
gi|325911750|ref|ZP_08174157.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners UPII 143-D]
gi|259166923|gb|EEW51418.1| RNA methyltransferase Sun [Lactobacillus iners DSM 13335]
gi|311089819|gb|EFQ48239.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners LEAF 2053A-b]
gi|325476516|gb|EGC79675.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners UPII 143-D]
Length = 437
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 101/352 (28%), Positives = 176/352 (50%), Gaps = 36/352 (10%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L T IV GT++++ YL++ + L + + PLLL + Y+ LD +P
Sbjct: 40 DKALTTQIVYGTVQYKLYLEYQLKSLVQTKLKEDYLWPLLL----MSAYQYFFLDKIPTA 95
Query: 170 AVVDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIY 227
++VDE +LAK G+ + LVNGILR LV + LP ++ + ++ Y
Sbjct: 96 SIVDEANKLAKSYSPKGSQSYRLVNGILRSLV--RRGEILP------EEKDAVKYMSIKY 147
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHEL 287
S+P W+V+ + G+ + I ++ N S+R +++ D ++ K+ E
Sbjct: 148 SYPQWLVKYCLDHFGKTKTISILQAGNMPSVNSIRI---ADMSKKDEILH----KLATEY 200
Query: 288 SLHLDEFIRVKTGLQN--VIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ + L + + + L K+GL +QD +A LVV + + + ++D C+APG
Sbjct: 201 KISISNLTNHNVNLDHGSITNSQLFKDGLITIQDSAASLVVDAFNFKGDEKVLDACSAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNET-AKLHQVNSVIRTIHADLRTFADNSTVK 404
GKT +A L+ G V+A+DI++ +L ++ +T +LHQ +I + +
Sbjct: 261 GKTAQIAEYLT-TGKVFALDIHQKKLNLVKQTLTRLHQDQKLIMKALDARKVNEYFFGQQ 319
Query: 405 CDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
DK+L+DAPCSGLG++ R +RY K ++HL E +Y +L
Sbjct: 320 FDKILVDAPCSGLGLI----------RRKPEVRYEKQMEDLKHLSEIQYNIL 361
>gi|169827064|ref|YP_001697222.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus
sphaericus C3-41]
gi|168991552|gb|ACA39092.1| Ribosomal RNA small subunit methyltransferase B [Lysinibacillus
sphaericus C3-41]
Length = 453
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 93/318 (29%), Positives = 163/318 (51%), Gaps = 18/318 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
++ +D L+T++ GT++ + LD+ + S++ + +LRI Y++ L
Sbjct: 44 IEAKDRALLTELTYGTLQHKMTLDYYLEPFIR-----GSIDHWVRWLLRISLYQMQYLTR 98
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A V+E V +AK G + VNGILR ++ +P + + R LA
Sbjct: 99 IPAHAAVNEAVEIAKRRGHRGIASTVNGILRSVL------RQGVPSINDIENPIER-LAI 151
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHP+W+V+R+ G E A ++ NN P ++R N+ K VT + +L +
Sbjct: 152 ETSHPIWLVQRFVNNYGLEVATGMLHENNVPPIQTVRVNTTK-VTVEQAMAELEEEGLTA 210
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ S + E + V G + KEG +QDES+ + V+ P PG ++D CAAPG
Sbjct: 211 KQSDVIPECLHVTNG--QPARTNAFKEGHITIQDESSMIPANVLKPSPGMRVLDMCAAPG 268
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405
GKT ++A + +G + A D++ +L +++ + ++ +I T D R + +
Sbjct: 269 GKTTHLAEIMKNEGSILATDLHPHKLDLIDHNTERLGLD-IIETAPIDGRKAPEFLQAES 327
Query: 406 -DKVLLDAPCSGLGVLSK 422
D +L+DAPCSGLGV+ +
Sbjct: 328 YDAILVDAPCSGLGVMRR 345
>gi|325913038|ref|ZP_08175411.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners UPII 60-B]
gi|325477718|gb|EGC80857.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners UPII 60-B]
Length = 437
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 101/352 (28%), Positives = 176/352 (50%), Gaps = 36/352 (10%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L T IV GT++++ YL++ + L + + PLLL + Y+ LD +P
Sbjct: 40 DKALTTQIVYGTVQYKLYLEYQLKSLVQTKLKEDYLWPLLL----MSAYQYFFLDKIPTA 95
Query: 170 AVVDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIY 227
++VDE +LAK G+ + LVNGILR LV + LP ++ + ++ Y
Sbjct: 96 SIVDEANKLAKSYSPKGSQSYRLVNGILRSLV--RRGEILP------EEKDAVKYMSIKY 147
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHEL 287
S+P W+V+ + G+ + I ++ N S+R +++ D ++ K+ E
Sbjct: 148 SYPQWLVKYCLDHFGKTKTISILQAGNMPSVNSIRI---ADMSKKDEILH----KLATEY 200
Query: 288 SLHLDEFIRVKTGLQN--VIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ + L + + + L K+GL +QD +A LVV + + + ++D C+APG
Sbjct: 201 KISISNLTNHNVNLDHGSITNSQLFKDGLITIQDSAASLVVDAFNFKGDEKVLDACSAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNET-AKLHQVNSVIRTIHADLRTFADNSTVK 404
GKT +A L+ G V+A+DI++ +L ++ +T +LHQ +I + +
Sbjct: 261 GKTAQIAEYLT-TGKVFALDIHQKKLNLVKQTLTRLHQDQKLIMKALDARKVNEYFFGQQ 319
Query: 405 CDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
DK+L+DAPCSGLG++ R +RY K ++HL E +Y +L
Sbjct: 320 FDKILVDAPCSGLGLI----------RRKPEVRYEKQMEDLKHLSEIQYNIL 361
>gi|420211892|ref|ZP_14717248.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM001]
gi|394280402|gb|EJE24683.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM001]
Length = 435
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 166/325 (51%), Gaps = 34/325 (10%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEI 161
T +++ D L T++V GTI+ + LD+L+ K F + ++ + Q+L + Y+
Sbjct: 33 TNNINTVDKNLFTELVYGTIKRKYTLDYLL-------KPFIKTKIKSWVRQLLWMSLYQY 85
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD +P +A++ E V +AK GN+VNG+LR ++ + LP E D +
Sbjct: 86 LYLDKIPNHAIIHEAVDIAKKRGGYHTGNIVNGVLRTVMRTE------LPSFEDIDDTKK 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN-SRKGVTRADLVMQLN 279
R +A YS P W+V W + G E+ + + ++RAN SR + ++
Sbjct: 140 R-IAIQYSLPKWIVNHWVTHFGVEKTENIARSFLEPVATTVRANISRDSIDSIISKLEQE 198
Query: 280 LLKVPHE----LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
V + LH+ +G+ V+ + KEG ++QD+S+ +V V++
Sbjct: 199 GYHVKKDDMLPFCLHI-------SGMP-VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDD 250
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
++D C+APGGK +MA LS +G V A DI++ ++ ++ + K ++N+ I+ D
Sbjct: 251 KVLDACSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQNIKKLKLNN-IKAFQHDAT 309
Query: 396 TFADNSTVKCDKVLLDAPCSGLGVL 420
D DK+L+DAPCSG GVL
Sbjct: 310 EVYDKM---YDKILVDAPCSGFGVL 331
>gi|349611597|ref|ZP_08890830.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus sp.
7_1_47FAA]
gi|348608444|gb|EGY58426.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus sp.
7_1_47FAA]
Length = 437
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 101/352 (28%), Positives = 176/352 (50%), Gaps = 36/352 (10%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L T IV GT++++ YL++ + L + + PLLL + Y+ LD +P
Sbjct: 40 DKALTTQIVYGTVQYKLYLEYQLKSLVQTKLKEDYLWPLLL----MSAYQYFFLDKIPTA 95
Query: 170 AVVDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIY 227
++VDE +LAK G+ + LVNGILR LV + LP ++ + ++ Y
Sbjct: 96 SIVDEANKLAKSYSPKGSQSYRLVNGILRSLV--RRGEILP------EEKDAVKYMSIKY 147
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHEL 287
S+P W+V+ + G+ + I ++ N S+R +++ D ++ K+ E
Sbjct: 148 SYPQWLVKYCLDHFGKAKTISILQAGNMPSVNSIRI---ADMSKKDEILH----KLSTEY 200
Query: 288 SLHLDEFIRVKTGLQN--VIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ + L + + + L K+GL +QD +A LVV + + + ++D C+APG
Sbjct: 201 KISISNLTNHNVNLDHGSITNSQLFKDGLITIQDSAASLVVDAFNFKGDEKVLDACSAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNET-AKLHQVNSVIRTIHADLRTFADNSTVK 404
GKT +A L+ G V+A+DI++ +L ++ +T +LHQ +I + +
Sbjct: 261 GKTAQIAEYLT-TGKVFALDIHQKKLNLVKQTLTRLHQDQKLIMKALDARKVNEYFFGQQ 319
Query: 405 CDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
DK+L+DAPCSGLG++ R +RY K ++HL E +Y +L
Sbjct: 320 FDKILVDAPCSGLGLI----------RRKPEVRYEKQMEDLKHLSEIQYNIL 361
>gi|363895560|ref|ZP_09322555.1| hypothetical protein HMPREF9629_00837 [Eubacteriaceae bacterium
ACC19a]
gi|361957312|gb|EHL10622.1| hypothetical protein HMPREF9629_00837 [Eubacteriaceae bacterium
ACC19a]
Length = 435
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 95/324 (29%), Positives = 166/324 (51%), Gaps = 15/324 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F+ DLD +T IV G + YLD+ I + + FS + IL + F+EI
Sbjct: 30 FKNIDLDYEMRGFITYIVYGVLSNINYLDYFIK--QYSDIAFSKISKKAKLILEMAFFEI 87
Query: 162 VKLDMP-PYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPK-LEGND-RA 218
+ ++ YA V+ENV+L K A + VN +LRK D N++ + K E +D +
Sbjct: 88 IFMNSSVNYASVNENVKLVK-KYDNRAKSFVNAVLRKFT--SDENNINIAKNYEFSDIKE 144
Query: 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLV-MQ 277
+ + T YS ++ +R E +L+ P +R N K D+ ++
Sbjct: 145 DVKYILTRYSVSEYIAQRLLDNYKIEFTQELLRSMADTPDIFIRGNRLK----TDIYDLK 200
Query: 278 LNLLKVPHELSLHLDEFIRVK-TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 336
NL K+ ++ + +E + V +++ + + K+GL +VQD ++ V V+ P+ +
Sbjct: 201 TNLQKLGNKFDIIDEENMIVSLKNFKDISKNDMYKKGLFSVQDYASMKTVLVLSPKSYED 260
Query: 337 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396
++D CAAPGGK+++MA + +G + ++DI+ +L++L E K ++ +I+T D
Sbjct: 261 VLDICAAPGGKSVFMAELMENKGSITSLDISSKKLKLLEEQTKRLGID-IIKTYVNDATI 319
Query: 397 FADNSTVKCDKVLLDAPCSGLGVL 420
+ K DKVL D PCSG+G+L
Sbjct: 320 YKSEYKNKFDKVLCDVPCSGIGIL 343
>gi|417919600|ref|ZP_12563129.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
australis ATCC 700641]
gi|342832367|gb|EGU66663.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
australis ATCC 700641]
Length = 433
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 112/368 (30%), Positives = 178/368 (48%), Gaps = 47/368 (12%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ L I GAF+++ KK G L D D LVT+IV
Sbjct: 5 REVALSTLGEIFQDGAFSNISLKKSLGKAT----------------LSDVDKSLVTEIVY 48
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GT+ + L+ + D ++P + +L + Y+ V L+ +P +AVV E V LA
Sbjct: 49 GTVSRKLTLEWYLSHFVADR---DQVDPWIYHLLLMSLYQFVYLEKIPLHAVVHEAVELA 105
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTK 239
K + G+ VN +LRK+ L++ LP ++ R R L+ YS PVW+V++
Sbjct: 106 K-QRKKGSEKYVNALLRKM--LREE----LPSIDQIKRINKR-LSIRYSLPVWLVKKLMD 157
Query: 240 YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKT 299
G+E AI + SL ++ V DL + ++ + L + + T
Sbjct: 158 EYGEERAIAIFE--------SLYVRNKASVRVVDLDKKEDIKE-----QLQASDSLLAST 204
Query: 300 GL--QNVIQAG--LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL 355
L +N AG K+G +QDE++ LV ++ QP ++D CAAPGGKT ++AS L
Sbjct: 205 ALVKENGYFAGSDYFKQGKLTIQDETSQLVAPALEVQPSDQVLDACAAPGGKTTHLASYL 264
Query: 356 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL-RTFADNSTVKCDKVLLDAPC 414
G V A+D+ +L+++ E A+ V I+T D + F DK+L+DAPC
Sbjct: 265 V-DGQVTALDLYDHKLQLIQENAERLGVADKIQTKKLDASKVFEAFGADAFDKILVDAPC 323
Query: 415 SGLGVLSK 422
SG+G++ +
Sbjct: 324 SGIGLIRR 331
>gi|416124380|ref|ZP_11595376.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis FRI909]
gi|319401490|gb|EFV89700.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis FRI909]
Length = 435
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 165/320 (51%), Gaps = 24/320 (7%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEI 161
T +++ D L T++V GT++ + LD+L+ K F + ++ + Q+L + Y+
Sbjct: 33 TNNINTVDKNLFTELVYGTLKRKYTLDYLL-------KPFIKTKIKSWVRQLLWMSLYQY 85
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD +P +A++ E V +AK GN+VNGILR ++ + LP E D +
Sbjct: 86 LYLDKIPNHAIIHEAVDIAKKRGGYHTGNIVNGILRTVMRTE------LPSFEDIDDTKK 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R +A YS P W+V W + G E+ + + ++RAN +G D ++
Sbjct: 140 R-IAIQYSLPKWIVDHWVTHFGIEKTENIAQSFLEPIATTVRANISRG--SIDSIISKLE 196
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ H + F +GL V+ + KEG ++QD+S+ +V V++ ++D
Sbjct: 197 QEGYHVKKDDMLPFCLHISGLP-VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDDKVLDA 255
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
C+APGGK +MA LS +G V A DI++ ++ ++ + K ++N++ H +
Sbjct: 256 CSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQNIKKLKLNNIKAFQHDATEVYNK- 314
Query: 401 STVKCDKVLLDAPCSGLGVL 420
DK+L+DAPCSGLGVL
Sbjct: 315 ---MYDKILVDAPCSGLGVL 331
>gi|420199003|ref|ZP_14704687.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM031]
gi|394272689|gb|EJE17139.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM031]
Length = 435
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 167/325 (51%), Gaps = 34/325 (10%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEI 161
T +++ D L T++V GT++ + LD+L+ K F + ++ + Q+L + Y+
Sbjct: 33 TNNINTVDKNLFTELVYGTLKRKYTLDYLL-------KPFIKTKIKSWVRQLLWMSLYQY 85
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD +P +A++ E V +AK GN+VNGILR ++ + LP E D +
Sbjct: 86 LYLDKIPNHAIIHEAVDIAKKRGGYHTGNIVNGILRTVMRTE------LPSFEDIDDTKK 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN-SRKGVTRADLVMQLN 279
R +A YS P W+V W + G E+ + + ++RAN SR + ++
Sbjct: 140 R-IAIQYSLPKWIVDHWVTHFGIEKTENIAQSFLEPVATTVRANISRGSIDSIISKLEQE 198
Query: 280 LLKVPHE----LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
+V + LH+ +GL V+ + KEG ++QD+S+ +V V++
Sbjct: 199 GYQVKKDDMLPFCLHI-------SGLP-VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDD 250
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
++D C+APGGK +MA LS +G V A DI++ ++ ++ + K ++N++ H
Sbjct: 251 KVLDACSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQNIKKLKLNNIKAFQHDATE 310
Query: 396 TFADNSTVKCDKVLLDAPCSGLGVL 420
+ DK+L+DAPCSGLGVL
Sbjct: 311 VYNK----MYDKILVDAPCSGLGVL 331
>gi|409386861|ref|ZP_11239205.1| Ribosomal RNA small subunit methyltransferase B [Lactococcus
raffinolactis 4877]
gi|399205948|emb|CCK20120.1| Ribosomal RNA small subunit methyltransferase B [Lactococcus
raffinolactis 4877]
Length = 437
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/333 (30%), Positives = 161/333 (48%), Gaps = 45/333 (13%)
Query: 103 RTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIV 162
+++ L + D +LVT +V GTI + LD + + + + +L + Y+I+
Sbjct: 32 KSEHLTELDKKLVTQLVYGTISKKITLD------WYTKPYVKKTKKWVKNLLAMTVYQII 85
Query: 163 KLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
+D +P A VDE V++AK VNG+LR RA+ R
Sbjct: 86 YMDRIPTSAAVDEAVKIAKKQGDQRLSGFVNGVLRNFT-----------------RAELR 128
Query: 222 ALATI----------YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR 271
+ I YS P + +++ G E+ + + + +PS RA+ R T
Sbjct: 129 SFDEISDSTEKLGIQYSMPAELTQKFVTQFGFEKT-RQIFKSLEEPS---RASLRVNTTL 184
Query: 272 ADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLL--KEGLCAVQDESAGLVVAVV 329
D+ + N K+ E + E ++ A LL +GL +QDES+ LV +
Sbjct: 185 TDVETEFN--KLSQEFDVEKSELSSTGIVAKSGHFADLLDFNDGLITIQDESSQLVAVAL 242
Query: 330 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIR 388
D QP I+D CAAPGGKT+++A LS QG + A+D+ +LR++ + A +LHQ +
Sbjct: 243 DAQPTDKILDACAAPGGKTVHIAEYLSEQGHIEALDLYDHKLRLIQQNAVRLHQAEKISL 302
Query: 389 TIHADLRTFADNSTVKC-DKVLLDAPCSGLGVL 420
T D R + +C DK+L+DAPCSGLG++
Sbjct: 303 T-KLDARQSFEKFGAECFDKILVDAPCSGLGLI 334
>gi|312871585|ref|ZP_07731677.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners LEAF 3008A-a]
gi|311092810|gb|EFQ51162.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners LEAF 3008A-a]
Length = 437
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 101/352 (28%), Positives = 176/352 (50%), Gaps = 36/352 (10%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L T IV GT++++ YL++ + L + + PLLL + Y+ LD +P
Sbjct: 40 DKALTTQIVYGTVQYKLYLEYQLKSLVKTKLKEDYLWPLLL----MSAYQYFFLDKIPTA 95
Query: 170 AVVDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIY 227
++VDE +LAK G+ + LVNGILR LV + LP ++ + ++ Y
Sbjct: 96 SIVDEANKLAKSYSPKGSQSYRLVNGILRSLV--RRGEILP------EEKDAVKYMSIKY 147
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHEL 287
S+P W+V+ + G+ + I ++ N S+R +++ D ++ K+ E
Sbjct: 148 SYPQWLVKYCLDHFGKTKTISILQAGNMPSVNSIRI---ADMSKKDEILH----KLATEY 200
Query: 288 SLHLDEFIRVKTGLQN--VIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ + L + + + L K+GL +QD +A LVV + + + ++D C+APG
Sbjct: 201 KISISNLTNHNVNLDHGSITNSQLFKDGLITIQDSAASLVVDAFNFKGDEKVLDACSAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNET-AKLHQVNSVIRTIHADLRTFADNSTVK 404
GKT +A L+ G V+A+DI++ +L ++ +T +LHQ +I + +
Sbjct: 261 GKTAQIAEYLT-TGKVFALDIHQKKLNLVKQTLTRLHQDQKLIMKALDARKVNEYFFGQQ 319
Query: 405 CDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
DK+L+DAPCSGLG++ R +RY K ++HL E +Y +L
Sbjct: 320 FDKILVDAPCSGLGLI----------RRKPEVRYEKQMEDLKHLSEIQYNIL 361
>gi|336113760|ref|YP_004568527.1| sun protein [Bacillus coagulans 2-6]
gi|335367190|gb|AEH53141.1| sun protein [Bacillus coagulans 2-6]
Length = 447
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 157/313 (50%), Gaps = 16/313 (5%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L+T+I GT++ ++ LD+ + +E + +LR+ Y++V LD +P
Sbjct: 43 DRALLTEITYGTLQRKQTLDYFLAPFLR-----KKIENWVRILLRLSIYQMVYLDKIPDR 97
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A++ E V +AK G +VNG+LR + + L ++E D + ++AT SH
Sbjct: 98 AIIFEAVEIAKKRGHRGISGMVNGVLRAI---QRGGLRSLKEIE--DPLERLSVAT--SH 150
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSL 289
P W+V RW + G + ++ N P + R N + +++ +L E S
Sbjct: 151 PHWLVARWAEAYGYKTTKEMCEANLIPPLQTARVNLNRASVE-EVIEKLVREGFTVERSP 209
Query: 290 HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 349
+ E +R + G N+ ++ KEGL +QDES+ V + Q GQ I+D CAAPGGKT
Sbjct: 210 VIPEAVRSRKG--NLARSACFKEGLFTIQDESSMAVAYALCIQEGQRILDACAAPGGKTT 267
Query: 350 YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 409
++A L G G V A+D++ + +++ E A+ V A D++L
Sbjct: 268 HIAEKLEGTGEVIALDLHPHKAKLVRENAERLGTGQVEAVAMDSRDAGAHFEKTTFDRIL 327
Query: 410 LDAPCSGLGVLSK 422
+DAPC+G GVL +
Sbjct: 328 VDAPCTGFGVLRR 340
>gi|375091698|ref|ZP_09737986.1| ribosomal RNA small subunit methyltransferase B [Helcococcus kunzii
ATCC 51366]
gi|374562585|gb|EHR33912.1| ribosomal RNA small subunit methyltransferase B [Helcococcus kunzii
ATCC 51366]
Length = 422
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 104/351 (29%), Positives = 176/351 (50%), Gaps = 31/351 (8%)
Query: 76 AFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICL 135
A ++LNK G NE+ L ++ RD + +V G + + YLD++ L
Sbjct: 6 ALDEILNK---GQFSNEV------LNLYADKVEKRDQNFLRQLVYGVVENKIYLDYI--L 54
Query: 136 LCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGIL 195
+ ++ +L I+RI YE+ L YAV++E V AK ++ A VNG+L
Sbjct: 55 QKSSKNKLEKLDKDILNIVRIALYELKFLSTKKYAVINEAVNNAK-KIKFSAKGFVNGVL 113
Query: 196 RKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYL-GQEEAIKLMVWNN 254
R + D N L +++G D + L+ YS + +++ +Y EE +K N
Sbjct: 114 RNI----DRNMDELSEIKGKD--NDKKLSIQYSCDLSIIKYLKQYYENYEEIVKSF---N 164
Query: 255 SDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGL 314
+ PSF++R N+ + L+ +L + E S + + +K + N+ + KEGL
Sbjct: 165 TVPSFNIRVNTF-LTDKEQLINRLEKKEYIVEKSDVSKDCLIIKNPI-NMTEIEEFKEGL 222
Query: 315 CAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRL-RI 373
+QD+S+ LV +++P+ S++D CAAPG K+ ++ ++ G V A DI K +L +I
Sbjct: 223 FTIQDQSSILVSEILNPKENSSVLDLCAAPGSKSTHLLQIMNNNGKVVANDIAKDKLDKI 282
Query: 374 LNETAKLHQVNSVIRTIHAD--LRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
+ +L N + A ++ F D K D VL+DAPCSGLGV+ +
Sbjct: 283 KDNFERLQLSNFELTNYDAQKTIKQFID----KFDYVLVDAPCSGLGVIKR 329
>gi|406979562|gb|EKE01322.1| hypothetical protein ACD_21C00160G0005 [uncultured bacterium]
Length = 431
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/313 (29%), Positives = 162/313 (51%), Gaps = 18/313 (5%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYA 170
D L+ ++ G +RW LD + LL HD + ++PL+ I+ +G Y+++ L +P +A
Sbjct: 37 DQALLQELSYGALRWYYRLDAIAKLLLHD--SSKKVDPLVYAIILVGLYQLLYLRIPQHA 94
Query: 171 VVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHP 230
+ E V A+V + A VN LR + ++ L ++EG+ AQ YSHP
Sbjct: 95 TLSETVEAARVVQKKWATGFVNATLRNFIRRQEEV---LKQIEGDVVAQ-------YSHP 144
Query: 231 VWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLH 290
W+++ + Q+ LM NN P LR N +K ++ + + +L ++ + +L
Sbjct: 145 AWLIKLLQRSWLQKWPGILMA-NNEYPPMHLRVNEQK-ISSGEYLKKLEVVDIQAKLVSG 202
Query: 291 LDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLY 350
I ++ +V + ++GL +VQD +A ++++ +PG ++D CAAPGGKT +
Sbjct: 203 FASAITLEKPC-DVFKLPGFQDGLVSVQDLAAQYAASLLELKPGLRVLDACAAPGGKTAH 261
Query: 351 MASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS-VIRTIHADLRTFADNSTVKCDKVL 409
+ + A+DI RL+ + + K Q+++ I A + + D K D++L
Sbjct: 262 ILETEPELQELVAVDIEDERLKRVRDNLKRLQLSAKCICGDAAKPQNWWDGK--KFDRIL 319
Query: 410 LDAPCSGLGVLSK 422
LDAPCSG GV+ +
Sbjct: 320 LDAPCSGTGVIRR 332
>gi|307244450|ref|ZP_07526559.1| ribosomal RNA small subunit methyltransferase B [Peptostreptococcus
stomatis DSM 17678]
gi|306492143|gb|EFM64187.1| ribosomal RNA small subunit methyltransferase B [Peptostreptococcus
stomatis DSM 17678]
Length = 447
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 167/324 (51%), Gaps = 20/324 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LDD+D VT++V G I +RYLD++I + + M+ + +LR+G Y++V +D
Sbjct: 34 LDDQDKGFVTELVYGIIEKKRYLDYMINKVS--KIKVRKMQHSVKLVLRMGVYQLVYMDG 91
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+ YA ++E+V + K L + + VN +LR N S L +++ LA
Sbjct: 92 VTDYAAINESVNIMK-KLDKRSASFVNAVLR-------NISRNLDEVKDISLNTVDKLAI 143
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANS---RKGVTRADLVMQLNLLK 282
YS+ W+V K G E ++ + P+ LR N R G + LV Q+
Sbjct: 144 YYSYENWIVENLVKEYGFERTEAILRALSQKPNIYLRVNRTKLRPGQSMDYLVGQIIGRI 203
Query: 283 VPHELSLH----LDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 338
+ L L+E I+VK GL+++ + L +EG +VQD S+ LV V++P+ ++
Sbjct: 204 IDQGLEASRVEGLEEAIKVK-GLKSIDKHPLFREGYVSVQDISSILVAKVMNPKRESRVL 262
Query: 339 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398
D CAAPGGK+ ++ + G + + DI +++++N A+ +N++ + D
Sbjct: 263 DLCAAPGGKSTHIGELMENTGHLISQDIFDHKIKLMNTYARRLGLNNMEARL-GDALVLN 321
Query: 399 DNSTVKCDKVLLDAPCSGLGVLSK 422
D+ K D VL D PCSG+G++ +
Sbjct: 322 DDYIGKFDYVLCDVPCSGMGIVRR 345
>gi|225018695|ref|ZP_03707887.1| hypothetical protein CLOSTMETH_02645 [Clostridium methylpentosum
DSM 5476]
gi|224948423|gb|EEG29632.1| hypothetical protein CLOSTMETH_02645 [Clostridium methylpentosum
DSM 5476]
Length = 441
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 97/326 (29%), Positives = 158/326 (48%), Gaps = 28/326 (8%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLL-----QILRIGF 158
+ L RD + G + + LD++I ++++M+P + ILR+G
Sbjct: 34 SSSLSPRDRDFAAKLFYGVLETKITLDYIIA-------SYATMKPEKISSDVRNILRLGL 86
Query: 159 YEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRA 218
Y+I LD+ +A V+E+V L K+ + A VN ILR L+D ++PLP+ + ++R
Sbjct: 87 YQIKYLDLEDFAAVNESVNLVKLRGKKSASGFVNAILR--AFLRDGKNIPLPE-DPDERL 143
Query: 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK--GVTRADLVM 276
R +S PVW+VR + G+E A +++ P +LR N+ K T L+
Sbjct: 144 SVR-----FSCPVWLVRSFVGEYGRETAERILESQLGRPPLTLRVNTLKTSAETLCALLQ 198
Query: 277 QLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 336
Q + VPH E + G + EGL VQD S+ L V ++
Sbjct: 199 QEGIEAVPHPQEQTCVEVL----GGGALTGTKAFAEGLFHVQDISSQLCARTVASYAPRT 254
Query: 337 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396
++D CAAPGGKT +A L + A D++K R+ ++ + A + SV + +D
Sbjct: 255 LLDVCAAPGGKTFTIAEELGDAAEITACDLHKKRVGLIKQGAARLGLCSV-DAVESDASK 313
Query: 397 FADNSTVKCDKVLLDAPCSGLGVLSK 422
A++ + D VL D PCSG GV+ +
Sbjct: 314 -ANDRFGQFDAVLCDVPCSGFGVIRR 338
>gi|312871906|ref|ZP_07731988.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners LEAF 2062A-h1]
gi|312873262|ref|ZP_07733318.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners LEAF 2052A-d]
gi|311091273|gb|EFQ49661.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners LEAF 2052A-d]
gi|311092483|gb|EFQ50845.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners LEAF 2062A-h1]
Length = 437
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 101/352 (28%), Positives = 176/352 (50%), Gaps = 36/352 (10%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L T IV GT++++ YL++ + L + + PLLL + Y+ LD +P
Sbjct: 40 DKALTTQIVYGTVQYKLYLEYQLKSLVKTKLKEDYLWPLLL----MSAYQYFFLDKIPTA 95
Query: 170 AVVDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIY 227
++VDE +LAK G+ + LVNGILR LV + LP ++ + ++ Y
Sbjct: 96 SIVDEANKLAKSYSPKGSQSYRLVNGILRSLV--RRGEILP------EEKDAVKYMSIKY 147
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHEL 287
S+P W+V+ + G+ + I ++ N S+R +++ D ++ K+ E
Sbjct: 148 SYPQWLVKYCLDHFGKAKTISILQAGNMPSVNSIRI---ADMSKKDEILH----KLATEY 200
Query: 288 SLHLDEFIRVKTGLQN--VIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ + L + + + L K+GL +QD +A LVV + + + ++D C+APG
Sbjct: 201 KISISNLTNHNVNLDHGSITNSQLFKDGLITIQDSAASLVVDAFNFKGDEKVLDACSAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNET-AKLHQVNSVIRTIHADLRTFADNSTVK 404
GKT +A L+ G V+A+DI++ +L ++ +T +LHQ +I + +
Sbjct: 261 GKTAQIAEYLT-TGKVFALDIHQKKLNLVKQTLTRLHQDQKLIMKALDARKVNEYFFGQQ 319
Query: 405 CDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
DK+L+DAPCSGLG++ R +RY K ++HL E +Y +L
Sbjct: 320 FDKILVDAPCSGLGLI----------RRKPEVRYEKQMEDLKHLSEIQYNIL 361
>gi|420206463|ref|ZP_14711973.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM008]
gi|394278302|gb|EJE22619.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM008]
Length = 435
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 166/325 (51%), Gaps = 34/325 (10%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEI 161
T +++ D L T++V GTI+ + LD+L+ K F + ++ + Q+L + Y+
Sbjct: 33 TNNINTVDKNLFTELVYGTIKRKYTLDYLL-------KPFIKTKIKSWVRQLLWMSLYQY 85
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD +P +A++ E V +AK GN+VNG+LR ++ + LP E D +
Sbjct: 86 LYLDKIPNHAIIHEAVDIAKKRGGYHTGNIVNGVLRTVMRTE------LPSFEDIDDTKK 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN-SRKGVTRADLVMQLN 279
R +A YS P W+V W + G E+ + + ++RAN SR + ++
Sbjct: 140 R-IAIQYSLPKWIVDHWVTHFGVEKTENIARSFLEPVATTVRANISRDSIDSIISKLEQE 198
Query: 280 LLKVPHE----LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
V + LH+ +G+ V+ + KEG ++QD+S+ +V V++
Sbjct: 199 GYHVKKDDMLPFCLHI-------SGMP-VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDD 250
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
++D C+APGGK +MA LS +G V A DI++ ++ ++ + K ++N+ I+ D
Sbjct: 251 KVLDACSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQNIKKLKLNN-IKAFQHDAT 309
Query: 396 TFADNSTVKCDKVLLDAPCSGLGVL 420
D DK+L+DAPCSG GVL
Sbjct: 310 EVYDKM---YDKILVDAPCSGFGVL 331
>gi|88194923|ref|YP_499723.1| sun protein [Staphylococcus aureus subsp. aureus NCTC 8325]
gi|379014408|ref|YP_005290644.1| 16S rRNA methyltransferase B [Staphylococcus aureus subsp. aureus
VC40]
gi|417650103|ref|ZP_12299880.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21189]
gi|440734663|ref|ZP_20914275.1| sun protein [Staphylococcus aureus subsp. aureus DSM 20231]
gi|87202481|gb|ABD30291.1| sun protein [Staphylococcus aureus subsp. aureus NCTC 8325]
gi|329724759|gb|EGG61264.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21189]
gi|374363105|gb|AEZ37210.1| 16S rRNA methyltransferase B [Staphylococcus aureus subsp. aureus
VC40]
gi|436431691|gb|ELP29044.1| sun protein [Staphylococcus aureus subsp. aureus DSM 20231]
Length = 435
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 102/330 (30%), Positives = 169/330 (51%), Gaps = 48/330 (14%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNAMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQ 277
+ +A YS P W++ W + G EE K++ S ++RAN +TRA D++ +
Sbjct: 139 KRMAIEYSMPKWIIDHWATHYGLEETEKILQSFLETTSTTVRAN----LTRASLDDIIEK 194
Query: 278 LNL----LKVPHELS--LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
L ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 390
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 247 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAF 304
Query: 391 HADLRTFADNSTVKCDKVLLDAPCSGLGVL 420
D D + DK+L+DAPCSGLGV+
Sbjct: 305 QHDATKPYDKT---YDKILVDAPCSGLGVM 331
>gi|260584743|ref|ZP_05852489.1| ribosomal RNA small subunit methyltransferase B [Granulicatella
elegans ATCC 700633]
gi|260157766|gb|EEW92836.1| ribosomal RNA small subunit methyltransferase B [Granulicatella
elegans ATCC 700633]
Length = 441
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 101/346 (29%), Positives = 169/346 (48%), Gaps = 41/346 (11%)
Query: 110 RDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPP 168
+D L+T++ GTI+ + +D + K ++P + Q+LRI Y++V LD +P
Sbjct: 38 KDKGLLTELFYGTIQRKMTIDFYLAPYIQKAK---KIQPWVKQLLRISIYQMVFLDKIPD 94
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+A + E V++AK G VNG+LR + N+ +++ D ++ YS
Sbjct: 95 HAAIFEAVQIAKKRGHQGIAKFVNGVLRNF---QRNDLRSFEEIKDTDER----MSVQYS 147
Query: 229 HPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELS 288
P WM + + + G E+A ++ + PS S+R +Q N L
Sbjct: 148 IPKWMYQLFKQQYGVEQAQQISESILTAPSVSVR-------------IQPNHLNQEQVKQ 194
Query: 289 LHLDEFIRVKTGL----------QNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 338
L L+E ++ + NV + ++G+ +QDE++ LV V + +P ++
Sbjct: 195 LLLEEGVQTRESTLSNRCLIVEEGNVFLSKTFEKGIITIQDEASSLVAQVANLKPTNKVL 254
Query: 339 DCCAAPGGKTLYMASCL--SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396
D CAAPGGKT ++AS L S G V A+D+ + +L+ + E AK QV+ I D R
Sbjct: 255 DTCAAPGGKTTHIASYLDPSKGGRVDALDLYEHKLKKIQENAKRLQVDDCISMRILDARN 314
Query: 397 FAD-NSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKT 441
+ T D V +DAPCSGLG++ + D + KSL+ K+
Sbjct: 315 AQEAYPTESFDAVFVDAPCSGLGLVRRK----PDIKYTKSLKDLKS 356
>gi|229019063|ref|ZP_04175901.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1273]
gi|228742231|gb|EEL92393.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1273]
Length = 369
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 142/273 (52%), Gaps = 15/273 (5%)
Query: 153 ILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPK 211
+LR+ Y+++ LD +P A + E V +AK G +VNG+LR + +P
Sbjct: 2 LLRLSLYQMLYLDRVPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPS 55
Query: 212 LEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR 271
LE R LA SHP W+V+ W G E A K+ N P + R N K VT
Sbjct: 56 LEEIKDPVER-LAITTSHPAWLVQDWVSEYGLETAGKMCEVNMLPPVPTARVNVDK-VTV 113
Query: 272 ADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
+ + L + + D+ I+++ G NV K+G ++QDES+ LV ++P
Sbjct: 114 EEAIGLLANEGIEAKRGDLSDDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEP 171
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTI 390
G ++D CAAPGGKT ++A L G G V ++D++ ++R++ + A +L N + +
Sbjct: 172 NEGDEVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIRQQADRLGLENVETKAL 231
Query: 391 HA-DLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
A ++ +N T DK+L+DAPCSG GV+ +
Sbjct: 232 DARKVQEHFENETF--DKILVDAPCSGFGVIRR 262
>gi|347534353|ref|YP_004841023.1| hypothetical protein LSA_06680 [Lactobacillus sanfranciscensis TMW
1.1304]
gi|345504409|gb|AEN99091.1| hypothetical protein LSA_06680 [Lactobacillus sanfranciscensis TMW
1.1304]
Length = 448
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/318 (29%), Positives = 164/318 (51%), Gaps = 17/318 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+ ++D RL T+IV G I+ R ++ + L K ++ + ++L Y+++ LD
Sbjct: 42 MSEKDTRLFTNIVYGVIQHRLTFEYYVSKLV---KHPGKLQNWVKELLYTAIYQMIYLDK 98
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A+ DE++++AK G LV G+L K+ + LP++ G + + +++
Sbjct: 99 VPNRAIFDESIKIAKFRGHDGIRRLVTGVLHKI------DRDGLPQITGMNAIEKQSIEA 152
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
S PVW++++ +G+ + ++ N + S+R N +K + + LV +L +
Sbjct: 153 --SVPVWIIKQLNNQVGKAKTESILKSINQPANQSIRINIKK-IEKKALVKELERIGFTV 209
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
S + + +K G+ L KEG +QDESA L V +D I+D CAAPG
Sbjct: 210 RDSEVAADALVLKDGV--AAHTALFKEGFYTIQDESAMLPVQSMDIDGDDYILDTCAAPG 267
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405
GKT +A L+ GLV A+D+++ +L + E A+ V+ + D R D
Sbjct: 268 GKTTQIAEHLT-TGLVVALDLHENKLHKIMENAERMGVSENVEVHACDARKVGDIYEDNV 326
Query: 406 -DKVLLDAPCSGLGVLSK 422
DK+L+DAPCSGLG++ +
Sbjct: 327 FDKILVDAPCSGLGLIRR 344
>gi|295425221|ref|ZP_06817924.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
amylolyticus DSM 11664]
gi|295064997|gb|EFG55902.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
amylolyticus DSM 11664]
Length = 447
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 113/370 (30%), Positives = 181/370 (48%), Gaps = 49/370 (13%)
Query: 61 RAVSAVRLMRIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIV 119
RA++ L+R+ G+++++ LN K S +L D L T IV
Sbjct: 14 RAIALETLIRVLENGSYSNISLNNNLKHS-----------------NLSVADQNLATKIV 56
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRL 178
GTI+++ YL++ + L + T ++PLLL + Y+I+ LD +P AV+DE +L
Sbjct: 57 YGTIQYKIYLEYQLHDLIKSKITEKYLKPLLL----MSAYQILFLDKVPNRAVLDEANKL 112
Query: 179 AK-VALRPGAG-NLVNGILRKLV----LLKDNNSLPLPKLEGNDRAQARALATIYSHPVW 232
AK + +G LVNGILR L +L D N L L+ S P W
Sbjct: 113 AKQFGKKHSSGFRLVNGILRSLTRRGPILPDKNDL------------VNYLSVKESFPRW 160
Query: 233 MVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM-QLNLLKVPHELSLHL 291
+V + G+ K++ N S+R + + + + Q P +L+ ++
Sbjct: 161 LVEYFISLWGEARTEKILASYNETAKNSVRLSILQDEEKTVAALKQAGYEPTPSKLAANV 220
Query: 292 DEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYM 351
I V G + + L K+G +QDE+A LVV D + + ++D C+APGGKT+ +
Sbjct: 221 A--ILVHGG---IASSSLFKQGKLTIQDEAASLVVDAFDFKGNEKVLDACSAPGGKTVQI 275
Query: 352 ASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLL 410
A L G V A+DI+ +LR++ + K V ++T+ D R D S + K+L+
Sbjct: 276 AEHLQ-TGEVTALDIHDKKLRLVQQNTKRMNVADKVKTVAIDARKADDYFSKQQFAKILV 334
Query: 411 DAPCSGLGVL 420
DAPCSGLG+L
Sbjct: 335 DAPCSGLGLL 344
>gi|229025307|ref|ZP_04181726.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1272]
gi|228735998|gb|EEL86574.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1272]
Length = 387
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 142/273 (52%), Gaps = 15/273 (5%)
Query: 153 ILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPK 211
+LR+ Y+++ LD +P A + E V +AK G +VNG+LR + +P
Sbjct: 20 LLRLSLYQMLYLDRVPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPS 73
Query: 212 LEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR 271
LE R LA SHP W+V+ W G E A K+ N P + R N K VT
Sbjct: 74 LEEIKDPVER-LAITTSHPAWLVQDWVSEYGLETAGKMCEVNMLPPVPTARVNVDK-VTV 131
Query: 272 ADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
+ + L + + D+ I+++ G NV K+G ++QDES+ LV ++P
Sbjct: 132 EEAIGLLANEGIEAKRGDLSDDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALEP 189
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTI 390
G ++D CAAPGGKT ++A L G G V ++D++ ++R++ + A +L N + +
Sbjct: 190 NEGDEVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIRQQADRLGLENVETKAL 249
Query: 391 HA-DLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
A ++ +N T DK+L+DAPCSG GV+ +
Sbjct: 250 DARKVQEHFENETF--DKILVDAPCSGFGVIRR 280
>gi|355670264|ref|ZP_09057119.1| ribosomal RNA small subunit methyltransferase B [Clostridium
citroniae WAL-17108]
gi|354816336|gb|EHF00924.1| ribosomal RNA small subunit methyltransferase B [Clostridium
citroniae WAL-17108]
Length = 446
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/318 (29%), Positives = 154/318 (48%), Gaps = 21/318 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD D +T + GT+ + +DH+I + + M+PL+ +LR+ Y+I+ +D
Sbjct: 43 LDKPDRAFITRVTEGTLEYLLQIDHIINR--YSKTKTEKMKPLIRNLLRMSVYQILYMDR 100
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A +E V+LA G VNG+LR + KD+ P L
Sbjct: 101 VPDSAACNEAVKLAVKRHFSGLKGFVNGVLRTVSREKDSLVFDTPSL------------- 147
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
YS P WM W K G+E+A + D +R N + +R +++ L V
Sbjct: 148 AYSIPQWMYDMWEKEYGREKAGAIAASFLRDGPTWVRCNLSRA-SRKEILESLASQGVAV 206
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
L+ I + +G + + G VQD ++ LV + DP+ G I+D CAAPG
Sbjct: 207 TGLSWLESMISI-SGYDYLESLESFRNGWIQVQDVTSALVSELADPKEGDYIIDVCAAPG 265
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNET-AKLHQVNSVIRTIHADLRTFADNSTVK 404
GK+L++A L G G+V A D+++ ++ ++ E A+ N I+ + D +++ K
Sbjct: 266 GKSLHLADKLKGTGMVEARDLSEQKVAMIEENMARFGASN--IKAVVWDALVTDEDAREK 323
Query: 405 CDKVLLDAPCSGLGVLSK 422
D V+ D PCSGLG++ K
Sbjct: 324 ADIVIADLPCSGLGIIGK 341
>gi|163119428|ref|YP_078968.2| rRNA SAM-dependent methyltransferase RmsB [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|404489065|ref|YP_006713171.1| 16S rRNA methyltransferase B [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|423682119|ref|ZP_17656958.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus licheniformis
WX-02]
gi|52348056|gb|AAU40690.1| rRNA large subunit methyltransferase B [Bacillus licheniformis DSM
13 = ATCC 14580]
gi|145902935|gb|AAU23330.2| rRNA SAM-dependent methyltransferase RmsB [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|383438893|gb|EID46668.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus licheniformis
WX-02]
Length = 448
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/344 (28%), Positives = 169/344 (49%), Gaps = 28/344 (8%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYE 160
+ DL D+D L+T++V GT++ + LD+++ K ++ ++ +LR+ Y+
Sbjct: 30 AMKANDLSDKDRGLLTELVYGTLQNKLALDYMLKPFI---KKPEKVKDWVIHLLRMSLYQ 86
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
+ L+ +P A + E V +AK G + VNG+LR + +P
Sbjct: 87 MEYLEKIPDRAALFEAVEIAKRRGHKGISSFVNGVLRSV------QREGVPSFADIADPI 140
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
R LA SHP W+VR WT G E A ++ + P ++R N K R L+ +LN
Sbjct: 141 ER-LAVETSHPEWLVREWTDAYGFEAAEQICRIHMIPPKQTIRVNRLKN-DRDTLLSRLN 198
Query: 280 LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 339
+ E + +++ G + KEG +QDES+ LV + P+ G++++D
Sbjct: 199 EAGIEAEEGDLSKDAVKLLKG--TIASTPFFKEGEVTIQDESSMLVARALGPERGETVLD 256
Query: 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHADLRTFA 398
CAAPGGK+ ++ L G V ++D+++ +++++ E A ++ N R + D R
Sbjct: 257 ACAAPGGKSTHIGELLEDTGKVVSLDLHQHKVKLIKEAAGRIGLSNIEARAL--DARKAG 314
Query: 399 D-NSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKT 441
+ + D++L+DAPCSG GV+ R L+Y KT
Sbjct: 315 EVFEPEQFDRILVDAPCSGFGVI----------RRKPDLKYSKT 348
>gi|418325013|ref|ZP_12936223.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU071]
gi|365228919|gb|EHM70091.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU071]
Length = 435
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/325 (29%), Positives = 166/325 (51%), Gaps = 34/325 (10%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEI 161
T +++ D L T++V GTI+ + LD+L+ K F + ++ + Q+L + Y+
Sbjct: 33 TNNINTVDKNLFTELVYGTIKRKYTLDYLL-------KPFIKTKIKSWVRQLLWMSLYQY 85
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD +P +A++ E V +AK GN+VNGILR ++ + LP E D +
Sbjct: 86 LYLDKIPNHAIIHEAVDIAKKRGGYHTGNIVNGILRTVMRTE------LPNFEDIDDTKK 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN-SRKGVTRADLVMQLN 279
R +A YS P W+V W + G E+ + + ++RAN SR + ++
Sbjct: 140 R-IAIQYSLPKWIVDHWVTHFGVEKTENIARSFLEPVATTVRANISRDSIDSIISKLEQE 198
Query: 280 LLKVPHE----LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
V + LH+ +G+ V+ + KEG ++QD+S+ +V V++
Sbjct: 199 GYHVKKDDMLPFCLHI-------SGMP-VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDD 250
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
++D C+APGGK +MA LS +G V A DI++ ++ ++ + ++N+ I+ D
Sbjct: 251 KVLDACSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQNITKLKLNN-IKAFQHDAT 309
Query: 396 TFADNSTVKCDKVLLDAPCSGLGVL 420
D DK+L+DAPCSGLGVL
Sbjct: 310 EVYDKM---YDKILVDAPCSGLGVL 331
>gi|319646043|ref|ZP_08000273.1| YloM protein [Bacillus sp. BT1B_CT2]
gi|317391793|gb|EFV72590.1| YloM protein [Bacillus sp. BT1B_CT2]
Length = 444
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/344 (28%), Positives = 169/344 (49%), Gaps = 28/344 (8%)
Query: 101 GFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYE 160
+ DL D+D L+T++V GT++ + LD+++ K ++ ++ +LR+ Y+
Sbjct: 26 AMKANDLSDKDRGLLTELVYGTLQNKLALDYMLKPFI---KKPEKVKDWVIHLLRMSLYQ 82
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
+ L+ +P A + E V +AK G + VNG+LR + +P
Sbjct: 83 MEYLEKIPDRAALFEAVEIAKRRGHKGISSFVNGVLRSV------QREGVPSFADIADPI 136
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
R LA SHP W+VR WT G E A ++ + P ++R N K R L+ +LN
Sbjct: 137 ER-LAVETSHPEWLVREWTDAYGFEAAEQICRIHMIPPKQTIRVNRLKN-DRDTLLSRLN 194
Query: 280 LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 339
+ E + +++ G + KEG +QDES+ LV + P+ G++++D
Sbjct: 195 EAGIEAEEGDLSKDAVKLLKG--TIASTPFFKEGEVTIQDESSMLVARALGPERGETVLD 252
Query: 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHADLRTFA 398
CAAPGGK+ ++ L G V ++D+++ +++++ E A ++ N R + D R
Sbjct: 253 ACAAPGGKSTHIGELLEDTGKVVSLDLHQHKVKLIKEAAGRIGLSNIEARAL--DARKAG 310
Query: 399 D-NSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKT 441
+ + D++L+DAPCSG GV+ R L+Y KT
Sbjct: 311 EVFEPEQFDRILVDAPCSGFGVI----------RRKPDLKYSKT 344
>gi|417797986|ref|ZP_12445172.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21310]
gi|418656900|ref|ZP_13218686.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-105]
gi|334277108|gb|EGL95347.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21310]
gi|375032068|gb|EHS25324.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-105]
Length = 435
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 101/330 (30%), Positives = 168/330 (50%), Gaps = 48/330 (14%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNAMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQ 277
+ +A YS P W++ W + G EE ++ S ++RAN +TRA D++ +
Sbjct: 139 KRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTSTTVRAN----LTRASLDDIIEK 194
Query: 278 LNL----LKVPHELS--LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
L ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 390
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 247 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAF 304
Query: 391 HADLRTFADNSTVKCDKVLLDAPCSGLGVL 420
D D + DK+L+DAPCSGLGV+
Sbjct: 305 QHDATKLYDKT---YDKILVDAPCSGLGVM 331
>gi|332653342|ref|ZP_08419087.1| ribosomal RNA small subunit methyltransferase B [Ruminococcaceae
bacterium D16]
gi|332518488|gb|EGJ48091.1| ribosomal RNA small subunit methyltransferase B [Ruminococcaceae
bacterium D16]
Length = 445
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 98/320 (30%), Positives = 156/320 (48%), Gaps = 17/320 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL-D 165
L+ R+ L T + G ++ LD I + ME ++Q LR+G Y+++ L
Sbjct: 34 LEGREAALATQLCFGVVQNEMLLDFYISKFSN--IPLRRMESKVVQALRLGLYQMLFLTK 91
Query: 166 MPPYAVVDENVRLAKVALR-PGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P A V+ +V L + + P A +VN ILR L N LP + ND A+ +
Sbjct: 92 IPQSAAVNCSVELTRTHCKNPRAPGMVNAILRSL----QRNLNQLPTIPQNDLAEY--FS 145
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR--ADLVMQLNLLK 282
+YSHPVW+V LG E + + NNS P + N+ K + +L+ + +
Sbjct: 146 ILYSHPVWLVEELLPLLGSEGTAEFLQANNSQPPMTAMVNTTKAAAQEATELLAEQGVEV 205
Query: 283 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
PH + I KTG N+ + +GL VQD ++ L+ PG ++D CA
Sbjct: 206 TPHPWLENC--LILNKTG--NLERLDAYGQGLFYVQDPASRLMALASGAAPGMRVLDMCA 261
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402
APGGK+ A + QG V + D++ + +++ A + S+I+ + AD + +
Sbjct: 262 APGGKSFAAAIQMDNQGEVISCDLHPHKKKLIQAGADRLGL-SIIKPMTADGKVRREEWV 320
Query: 403 VKCDKVLLDAPCSGLGVLSK 422
D VL+DAPCSGLGV+ K
Sbjct: 321 SAFDLVLVDAPCSGLGVIRK 340
>gi|302023430|ref|ZP_07248641.1| ribosomal RNA small subunit methyltransferase [Streptococcus suis
05HAS68]
Length = 444
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 103/320 (32%), Positives = 158/320 (49%), Gaps = 28/320 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L +D L T++V GT+ + L+ + D + ++ + +L + Y++V LD
Sbjct: 40 LSAQDKGLATELVYGTVSRKITLEWYLAHFIEDRE---KLDTWVYYLLMLSLYQLVYLDK 96
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +AVV+E V +AK +PG VN ILRKL +SLP P + + + + L+
Sbjct: 97 LPTHAVVNEAVNIAK--RKPGTDKFVNAILRKL----SQDSLPKP---ADIKRKNKRLSV 147
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
YS PVW+V+ G E A K+ S R + VT V QL
Sbjct: 148 QYSVPVWLVQTLIAEYGDERAEKIF------QSLHDRNKASVRVTDGQQVEQL-----AE 196
Query: 286 ELSLHLDEFIRVKTGLQNVIQAG--LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
EL + V + AG K+GL +QDE++ LV + Q + I+D CAA
Sbjct: 197 ELGAQHSQLSPVGLVKSHGHFAGTDYFKKGLITIQDETSQLVAPTLGIQGDEIILDACAA 256
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL-RTFADNST 402
PGGKT +MAS L+ G VYA+D+ +L ++ E A+ + I T D R +
Sbjct: 257 PGGKTCHMASYLT-DGKVYALDLYDHKLNLIEENARRLGLEDKIETKGLDASRVHEEFGP 315
Query: 403 VKCDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG+G++ +
Sbjct: 316 DTFDKILVDAPCSGIGLIRR 335
>gi|224476326|ref|YP_002633932.1| putative NusB_Sun RNA binding protein [Staphylococcus carnosus
subsp. carnosus TM300]
gi|222420933|emb|CAL27747.1| putative NusB_Sun RNA binding protein [Staphylococcus carnosus
subsp. carnosus TM300]
Length = 435
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/353 (27%), Positives = 178/353 (50%), Gaps = 36/353 (10%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ +L D L+T++V GTI+ + L++ + + ++ + +L + Y+
Sbjct: 30 LKANELSRADKNLLTELVYGTIKRKITLEYYLKPFVQ-----TRIKGWMRHLLWMSIYQY 84
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRA 218
LD +P +A+++E V +AKV R G N +VNGILR ++ ++LP P +D+
Sbjct: 85 QYLDKVPDHAIINEAVEIAKV--RGGLHNSKVVNGILRNMM----RSNLPNPADIKDDKQ 138
Query: 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN-SRKGVTRADLVMQ 277
+ ++ +YS P W+V+ W + G + ++ P ++R N +RK V +A +Q
Sbjct: 139 R---ISIMYSMPKWIVKHWVTHYGVDTTERIAQSMLERPGQTVRVNLTRKTVAQAIQQLQ 195
Query: 278 LNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 337
V + + E+ +G + V ++ K+G+ ++QD+S+ V ++ P G I
Sbjct: 196 DEGYTVVQDSDI---EYCLHASG-KPVAESRAFKDGIVSIQDKSSMFVAQILAPAEGDDI 251
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397
+D C+APGGK A L G G V A DI++ ++ ++ + ++ +V H D + +
Sbjct: 252 LDACSAPGGKACQTAELLDGTGHVDATDIHEHKIDLIEHNVRKLRLKNVTAFQHDDTKPY 311
Query: 398 ADNSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCE 450
DK+L+DAPCSGLGVL R ++Y +T + +L E
Sbjct: 312 EK----MYDKILVDAPCSGLGVL----------RHKPEIKYMQTPETINNLVE 350
>gi|115376613|ref|ZP_01463843.1| ribosomal RNA small subunit methyltransferase B [Stigmatella
aurantiaca DW4/3-1]
gi|115366356|gb|EAU65361.1| ribosomal RNA small subunit methyltransferase B [Stigmatella
aurantiaca DW4/3-1]
Length = 425
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 107/324 (33%), Positives = 152/324 (46%), Gaps = 33/324 (10%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMP 167
D RD L T++ GT R + LD+ I ++ +ME +L LRIG Y++ +P
Sbjct: 23 DARDTALATELAYGTTRRQLALDYAITRFA--DRKLDAMEDRVLAALRIGAYQLFYTRVP 80
Query: 168 PYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIY 227
A V E V+ K A VN ILRKL L PLP + A L+
Sbjct: 81 ARAAVAETVQALKDLGVGRAAGFVNAILRKLAALP---GAPLPP----EDDVAEHLSVRE 133
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHEL 287
SHP W+V RW + G+E A ++V +N P +R N+ K VTR L+ Q E+
Sbjct: 134 SHPKWLVERWLRQFGRERAEAMLVADNQTPPVVVRTNTAK-VTREALLAQFR------EV 186
Query: 288 SLHLDEFIRVKTG--------LQNVIQAGLLKEGLCAVQDESAGLV-VAVVDPQPGQSIV 338
L + G L++V EGL VQDE+A LV V P+ +++
Sbjct: 187 GLEVQPTPVSPVGIVLPSLGRLEDVYG---YSEGLWQVQDEAAQLVGVYAAIPENARTL- 242
Query: 339 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398
D CAAPGGK + A V A+D++ +L + AK + S +R + D
Sbjct: 243 DVCAAPGGKACHQAETHE----VVAMDLHANKLPKIVSEAKRLGLLSRLRAVAHDATKPY 298
Query: 399 DNSTVKCDKVLLDAPCSGLGVLSK 422
D + + VL+DAPCSGLG L +
Sbjct: 299 DEALGEFQAVLVDAPCSGLGTLRR 322
>gi|228475051|ref|ZP_04059779.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
hominis SK119]
gi|314936621|ref|ZP_07843968.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
hominis subsp. hominis C80]
gi|418620475|ref|ZP_13183279.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
hominis VCU122]
gi|228271036|gb|EEK12424.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
hominis SK119]
gi|313655240|gb|EFS18985.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
hominis subsp. hominis C80]
gi|374822605|gb|EHR86625.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
hominis VCU122]
Length = 435
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 166/318 (52%), Gaps = 34/318 (10%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVKLD-MP 167
D L T++V GTI+ + LD + K F + ++ + Q+L + Y+ V LD +P
Sbjct: 40 DKALFTELVYGTIKRKMTLDFYL-------KPFVKTRIKGWVRQLLWMSLYQYVFLDKIP 92
Query: 168 PYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIY 227
+A+++E V +AK GN+VN ILR + LP LE + R + Y
Sbjct: 93 NHAIINEAVNIAKRRGGQHNGNIVNAILRHIF------KSDLPTLETIKNEKQR-MTIEY 145
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANS--RKGVTRADL-VMQLNLLKVP 284
S P W++ W + G E K+ SF +++ S R +R D+ + LL+
Sbjct: 146 SIPRWIIEHWITHYGIETTHKIA------KSFLVQSASTVRVNTSRTDVETISKALLQEG 199
Query: 285 HELSLHLDEFIRVKTGL--QNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
+ + + D+ I L + VI++ K+GL ++QD+S+ LV ++D Q +I+D C+
Sbjct: 200 YHVDI--DQLIPYCLHLTGKPVIESRAFKDGLISIQDKSSMLVGYLMDVQKDDTILDACS 257
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402
APGGK +MA L+ G V A DI+K ++ ++ E K ++ +V H + +++
Sbjct: 258 APGGKACHMAELLASTGHVDATDIHKHKIGLIKENIKKLKLKNVSTFDHDATKPYSE--- 314
Query: 403 VKCDKVLLDAPCSGLGVL 420
DK+L+DAPCSGLGVL
Sbjct: 315 -LYDKILVDAPCSGLGVL 331
>gi|330832248|ref|YP_004401073.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis ST3]
gi|329306471|gb|AEB80887.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis ST3]
Length = 436
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 103/320 (32%), Positives = 158/320 (49%), Gaps = 28/320 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L +D L T++V GT+ + L+ + D + ++ + +L + Y++V LD
Sbjct: 39 LSAQDKGLATELVYGTVSRKITLEWYLAHFIEDRE---KLDTWVYYLLMLSLYQLVYLDK 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +AVV+E V +AK +PG VN ILRKL +SLP P + + + + L+
Sbjct: 96 LPTHAVVNEAVNIAK--RKPGTDKFVNAILRKL----SQDSLPKP---ADIKRKNKRLSV 146
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
YS PVW+V+ G E A K+ S R + VT V QL
Sbjct: 147 QYSVPVWLVQTLIAEYGDERAEKIF------QSLHDRNKASVRVTDGQQVEQL-----AE 195
Query: 286 ELSLHLDEFIRVKTGLQNVIQAG--LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
EL + V + AG K+GL +QDE++ LV + Q + I+D CAA
Sbjct: 196 ELGAQHSQLSPVGLVKSHGHFAGTDYFKKGLITIQDETSQLVAPTLGIQGDEIILDACAA 255
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL-RTFADNST 402
PGGKT +MAS L+ G VYA+D+ +L ++ E A+ + I T D R +
Sbjct: 256 PGGKTCHMASYLT-DGKVYALDLYDHKLNLIEENARRLGLEDKIETKGLDASRVHEEFGP 314
Query: 403 VKCDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG+G++ +
Sbjct: 315 DTFDKILVDAPCSGIGLIRR 334
>gi|331086043|ref|ZP_08335126.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
bacterium 9_1_43BFAA]
gi|330406966|gb|EGG86471.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
bacterium 9_1_43BFAA]
Length = 452
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/318 (30%), Positives = 159/318 (50%), Gaps = 13/318 (4%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD ++ +T +V GT+ +D++I + + M+P++ ILR Y++ +D
Sbjct: 39 LDKKERAFITRVVEGTLERMIEIDYIINQFSN--VKVNKMKPVIRTILRSAVYQLKYMDG 96
Query: 166 MPPYAVVDENVRLA-KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P AV +E V+LA K R G VNG+LR + ++ + + P+ E N L+
Sbjct: 97 VPDSAVCNEAVKLAEKKGFRSLKG-FVNGVLRTIA--RNMDQIRYPEKEKN---PVSWLS 150
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
YS P WMV+ W G E K++ + +R N RK + +L +L V
Sbjct: 151 IHYSIPEWMVKLWLSEYGAETVEKMLKGFLEEHPTVIRCNLRKH-SEKELTERLRKEGVK 209
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
E +L + + +G ++ ++G VQD S+ LV + PQ G ++D CAAP
Sbjct: 210 VEAHPYLS-YAKKISGYDHLGGLESFRDGAFQVQDISSMLVAEIAAPQRGDQVIDVCAAP 268
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404
GGK++++A L G G+V A D+ + ++ ++ E + IR D F +S
Sbjct: 269 GGKSMHIADLLDGSGMVAARDLTEYKVGLIEENICRTGFQN-IRAEQKDATVFDKDSERI 327
Query: 405 CDKVLLDAPCSGLGVLSK 422
D V+ D PCSGLGVL+K
Sbjct: 328 ADIVIADLPCSGLGVLAK 345
>gi|375089345|ref|ZP_09735672.1| ribosomal RNA small subunit methyltransferase B [Facklamia languida
CCUG 37842]
gi|374567121|gb|EHR38352.1| ribosomal RNA small subunit methyltransferase B [Facklamia languida
CCUG 37842]
Length = 451
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 104/348 (29%), Positives = 165/348 (47%), Gaps = 29/348 (8%)
Query: 110 RDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPP 168
+D LV +V G+I+ R LD+ + ++ EP + +LR+ Y+ + LD +P
Sbjct: 49 KDKNLVVRVVYGSIQRRLTLDYFLSPFIKGQRP----EPWVQSLLRLSIYQALYLDRIPQ 104
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+A+V+E V +AKV G G VN ILR P P +E R + YS
Sbjct: 105 HAIVNEAVEIAKVNGHQGLGKYVNAILRNFF-----RQGP-PAIEAIQEENKR-WSIQYS 157
Query: 229 HPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELS 288
PVW+V +L + L N S+R N K DL L L P +++
Sbjct: 158 LPVWLVDYLVSHLPSADFHALAESLNQPTHLSIRVNHSKDQVMKDLAA-LGLGVEPSQVA 216
Query: 289 LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKT 348
D+ IRV G N I + G +QDES+ LV + + ++++D CAAPGGK
Sbjct: 217 ---DQGIRVMGG--NPIHTACYQTGAITIQDESSMLVAPLGQLKGDEAVLDACAAPGGKA 271
Query: 349 LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKV 408
+AS L+ G + A+D++ +L+ L + A+ + + AD R F ++ + D +
Sbjct: 272 TQIASYLTT-GHLQALDLSASKLKKLAQHAERMGLQDKLTIQVADARYFVPDTQMLYDVI 330
Query: 409 LLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
LDAPCSGLG++ + ++Y K+ +Q L + LL
Sbjct: 331 YLDAPCSGLGLMRRK----------PEIKYQKSKEAIQSLVNLQAQLL 368
>gi|325662242|ref|ZP_08150857.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
bacterium 4_1_37FAA]
gi|325471494|gb|EGC74715.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
bacterium 4_1_37FAA]
Length = 452
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/318 (30%), Positives = 159/318 (50%), Gaps = 13/318 (4%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD ++ +T +V GT+ +D++I + + M+P++ ILR Y++ +D
Sbjct: 39 LDKKERAFITRVVEGTLERMIEIDYIINQFSN--VKVNKMKPVIRTILRSAVYQLKYMDG 96
Query: 166 MPPYAVVDENVRLA-KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P AV +E V+LA K R G VNG+LR + ++ + + P+ E N L+
Sbjct: 97 VPDSAVCNEAVKLAEKKGFRSLKG-FVNGVLRTIA--RNMDQIRYPEKEKN---PVSWLS 150
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
YS P WMV+ W G E K++ + +R N RK + +L +L V
Sbjct: 151 IHYSIPEWMVKLWLSEYGAETVEKMLKGFLEEHPTVIRCNLRKQ-SEKELTERLRKEGVK 209
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
E +L + + +G ++ ++G VQD S+ LV + PQ G ++D CAAP
Sbjct: 210 VEAHPYLS-YAKKISGYDHLGGLESFRDGAFQVQDISSMLVAEIAAPQRGDQVIDVCAAP 268
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404
GGK++++A L G G+V A D+ + ++ ++ E + IR D F +S
Sbjct: 269 GGKSMHIADLLDGSGMVAARDLTEYKVGLIEENICRTGFQN-IRAEQKDATVFDKDSERI 327
Query: 405 CDKVLLDAPCSGLGVLSK 422
D V+ D PCSGLGVL+K
Sbjct: 328 ADIVIADLPCSGLGVLAK 345
>gi|227893309|ref|ZP_04011114.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus ultunensis
DSM 16047]
gi|227864889|gb|EEJ72310.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus ultunensis
DSM 16047]
Length = 455
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 115/373 (30%), Positives = 184/373 (49%), Gaps = 49/373 (13%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
RA+S L+++ G+++++ S +N F+ +L D L T IV
Sbjct: 20 RAISLATLIKVLEDGSYSNI-------SLNN---------SFKNSNLSVADQNLATRIVY 63
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI++R +L++ + L + T + PLLL + Y+I+ L+ +P AV+DE +LA
Sbjct: 64 GTIQYRLFLEYQLKGLIRTKLTERYINPLLL----MSLYQIIFLNKVPNRAVLDEANKLA 119
Query: 180 KVALRPGAGN--LVNGILRKL-----VLLKDNNSLPLPKLEGNDRAQARALATIYSHPVW 232
K R + +VNGILR +L K+NN L L+ S P W
Sbjct: 120 KQFGRHHSSGYRIVNGILRSFIRRGVILPKENNKLEY-------------LSVKESVPEW 166
Query: 233 MVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLD 292
+V+ + K LG E ++ N +R +S V ++ +L + S D
Sbjct: 167 LVKYFVKNLGIERTQSILTSINKPAKNCVRISSL--VNATEVFQRLKDEGYQPKWSNLSD 224
Query: 293 EFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ--SIVDCCAAPGGKTLY 350
+ +K G + Q+ L K+G +QDE+A LVV D Q ++D C+APGGKT+
Sbjct: 225 HDVTLKHG--GIGQSDLFKKGQLTIQDEAASLVVEAFDFDKTQVEHVLDACSAPGGKTVQ 282
Query: 351 MASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCDKVL 409
+A L+ G V A+DI++ +LR++ E AK V I+T D R + + K+L
Sbjct: 283 IAENLA-DGDVIALDIHEKKLRLVAENAKRMHVADKIKTQACDARKAGKIFNKGEFTKIL 341
Query: 410 LDAPCSGLGVLSK 422
+DAPCSGLG+L +
Sbjct: 342 VDAPCSGLGLLRR 354
>gi|302872122|ref|YP_003840758.1| sun protein [Caldicellulosiruptor obsidiansis OB47]
gi|302574981|gb|ADL42772.1| sun protein [Caldicellulosiruptor obsidiansis OB47]
Length = 423
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 163/324 (50%), Gaps = 16/324 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F K +++D L ++V G +R++ +D+ I + + +L ILR+ YE+
Sbjct: 21 FHQKLKNEKDRALFVELVHGVLRYKNLIDYYINFVTKK----GVKDKRILNILRVATYEL 76
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ L+ +P YA V+E +A + P VN ILR ++ K+ L K++ D
Sbjct: 77 LFLEKIPEYATVNEACEVAS-KISPHLKAFVNAILRNIIRNKNQIQESLEKIKDVDYKSY 135
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
++ S+P++++ + G E+ +K++ + N+ P S++ N++K + L+ +L+
Sbjct: 136 ISIKL--SYPIFLIDYLEESYGFEKTLKILEFLNTKPPQSIKINTKKTDVKV-LIQELDK 192
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAV--VDPQPGQSIV 338
+E++ + E I V G N+ + L K+G QD ++ LVV + D + + ++
Sbjct: 193 NGFEYEINFYNQEVIYVLKG--NIKETELYKKGYFYFQDLASSLVVKLNQEDFKEARKVI 250
Query: 339 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398
D CAAPGGKT A + G V A DIN +L +L E +++I +D F
Sbjct: 251 DLCAAPGGKTFNCAEVID--GFVVACDINDHKLDVLRENILRLGFDNII-VAKSDAEVFN 307
Query: 399 DNSTVKCDKVLLDAPCSGLGVLSK 422
+ + D V+ D PC+G G + K
Sbjct: 308 PDFAGRFDIVIADLPCTGFGAIRK 331
>gi|354807034|ref|ZP_09040511.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
curvatus CRL 705]
gi|354514539|gb|EHE86509.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
curvatus CRL 705]
Length = 447
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 98/330 (29%), Positives = 158/330 (47%), Gaps = 27/330 (8%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ L+ +D +T +V G I+ LD+ + ++ + Q+LR ++
Sbjct: 32 IKQNHLNPQDAGFLTQLVYGVIQHEMTLDYYLAPFIQKPAKLATW---VRQVLRTAVFQQ 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
V LD +P +A+ E +AK G LV ILR + LP L
Sbjct: 89 VYLDRVPEHAIFYEATEIAKQMGHAGTAKLVTAILR------NQQRTGLPDLAAIADPIE 142
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLV-MQLN 279
R L+ YS P W+V ++ + LGQ + L+ N + S+R N+R A L +Q +
Sbjct: 143 R-LSVTYSMPQWLVAKFHQELGQSKLEHLLATINQPANASIRVNTRVNSVDAVLADLQAD 201
Query: 280 LLKVPHELSLHLDEFIRVKTGL----QNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
L ++ + V GL ++ L ++G +QDES+ LV + QP
Sbjct: 202 --------GLTIEPSVIVAAGLVAHGGHLASGELFEQGAYIIQDESSMLVAPSLQLQPSD 253
Query: 336 SIVDCCAAPGGKTLYMASCL--SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD 393
I+D CAAPGGKT +MA+ L S G + A+DI++ ++R++ + AK V VI D
Sbjct: 254 RILDACAAPGGKTTHMATYLDASQGGQITALDIHEHKVRLIEQNAKRLHVADVIDARALD 313
Query: 394 LRTFADNSTVKC-DKVLLDAPCSGLGVLSK 422
R + + DK+L+DAPCSGLG++ +
Sbjct: 314 ARKVGEQFEPETFDKILVDAPCSGLGLMRR 343
>gi|227890276|ref|ZP_04008081.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus johnsonii
ATCC 33200]
gi|227849090|gb|EEJ59176.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus johnsonii
ATCC 33200]
Length = 438
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 103/326 (31%), Positives = 165/326 (50%), Gaps = 34/326 (10%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
DL D L T IV GTI+++ +L++ + L + S ++PLLL + Y+ L+
Sbjct: 34 DLKLADKALATRIVYGTIQYKIFLEYQLKPLIKTKLRDSFLKPLLL----MSAYQYFFLE 89
Query: 166 -MPPYAVVDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
+P A+ DE +LAK + +G+ LVNGILR L + LP ND +
Sbjct: 90 KVPANAIFDEANKLAKKYSKRNSGSYKLVNGILR--ALERQGKILP----PTNDLVEY-- 141
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR-------KGVTRADLV 275
L+ S P W+V + G+ E K++V +N + S+R ++ K + D
Sbjct: 142 LSIKESFPKWLVEYLLDHFGENETKKILVRSNQPAANSIRMTTKESDFEEIKEELKKDTF 201
Query: 276 MQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
PH L+L+ K G V Q L K G +QD +A L V D + +
Sbjct: 202 SFEESSLTPHNLNLN-------KGG---VAQTALFKNGKITIQDAAASLAVDAFDFKGSE 251
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
++D C+APGGKT+ +A L+ G V A+DI++ +LR++ A+ V+ ++T D R
Sbjct: 252 QVLDACSAPGGKTVQIAENLT-TGSVIALDIHENKLRLVRNAAERLHVSDKVKTKALDAR 310
Query: 396 TFADN-STVKCDKVLLDAPCSGLGVL 420
+ + + DK+L+DAPCSGLG++
Sbjct: 311 KSKEYFNQRQFDKILVDAPCSGLGLI 336
>gi|405355360|ref|ZP_11024586.1| Ribosomal RNA small subunit methyltransferase B [Chondromyces
apiculatus DSM 436]
gi|397091702|gb|EJJ22504.1| Ribosomal RNA small subunit methyltransferase B [Myxococcus sp.
(contaminant ex DSM 436)]
Length = 438
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 102/316 (32%), Positives = 150/316 (47%), Gaps = 17/316 (5%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMP 167
D RD LVT++ G R + LD+ I ++ ++E +L LRIG Y+I +P
Sbjct: 36 DPRDAALVTELTYGATRRQLALDYAIARFA--DRKLDALEDKVLAALRIGAYQIFHTRVP 93
Query: 168 PYAVVDENVR-LAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI 226
A V E V+ L +V L AG N ILRKL L PLP + A L+
Sbjct: 94 ARAAVAETVQALKEVGLARAAG-FANAILRKLAELPGP---PLPPVSN----LAHHLSVR 145
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHE 286
SHP W+V RW + G+E A ++V +N P+ +RAN+ K VTR L+ Q + V
Sbjct: 146 ESHPQWLVERWLRQFGRERAEAMLVADNQSPAVVVRANTAK-VTRDALLAQFQEVGVEAT 204
Query: 287 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 346
+ I + + + V EGL VQDE+A LV ++D CAAPGG
Sbjct: 205 ATTVSPVGITLPS-VGRVEDVYGYAEGLWQVQDEAAQLVGVYGAIPESARVLDACAAPGG 263
Query: 347 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 406
K + A V A+D++ +LR + A+ + S ++ D + +
Sbjct: 264 KACHQAQSHD----VVAVDLHAHKLRKIEAEARRLGLESRLKAFAHDAAEPFPEAWGEFH 319
Query: 407 KVLLDAPCSGLGVLSK 422
++DAPCSGLG L +
Sbjct: 320 AFVVDAPCSGLGTLRR 335
>gi|310819442|ref|YP_003951800.1| ribosomal RNA small subunit methyltransferase b [Stigmatella
aurantiaca DW4/3-1]
gi|309392514|gb|ADO69973.1| Ribosomal RNA small subunit methyltransferase B [Stigmatella
aurantiaca DW4/3-1]
Length = 438
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 107/324 (33%), Positives = 152/324 (46%), Gaps = 33/324 (10%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMP 167
D RD L T++ GT R + LD+ I ++ +ME +L LRIG Y++ +P
Sbjct: 36 DARDTALATELAYGTTRRQLALDYAITRFA--DRKLDAMEDRVLAALRIGAYQLFYTRVP 93
Query: 168 PYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIY 227
A V E V+ K A VN ILRKL L PLP + A L+
Sbjct: 94 ARAAVAETVQALKDLGVGRAAGFVNAILRKLAALP---GAPLPP----EDDVAEHLSVRE 146
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHEL 287
SHP W+V RW + G+E A ++V +N P +R N+ K VTR L+ Q E+
Sbjct: 147 SHPKWLVERWLRQFGRERAEAMLVADNQTPPVVVRTNTAK-VTREALLAQFR------EV 199
Query: 288 SLHLDEFIRVKTG--------LQNVIQAGLLKEGLCAVQDESAGLV-VAVVDPQPGQSIV 338
L + G L++V EGL VQDE+A LV V P+ +++
Sbjct: 200 GLEVQPTPVSPVGIVLPSLGRLEDVYG---YSEGLWQVQDEAAQLVGVYAAIPENARTL- 255
Query: 339 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398
D CAAPGGK + A V A+D++ +L + AK + S +R + D
Sbjct: 256 DVCAAPGGKACHQAETHE----VVAMDLHANKLPKIVSEAKRLGLLSRLRAVAHDATKPY 311
Query: 399 DNSTVKCDKVLLDAPCSGLGVLSK 422
D + + VL+DAPCSGLG L +
Sbjct: 312 DEALGEFQAVLVDAPCSGLGTLRR 335
>gi|33862543|ref|NP_894103.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9313]
gi|33640656|emb|CAE20445.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9313]
Length = 451
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 108/362 (29%), Positives = 177/362 (48%), Gaps = 29/362 (8%)
Query: 65 AVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIR 124
A L++ GA+AD+ +ER L R + D LV ++ G IR
Sbjct: 25 AWELLQAVAAGAYADV--------------ALERAL--RQNPMSGADRGLVMELAYGAIR 68
Query: 125 WRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVAL 183
R++LD + L + P+L +L +G Y+I+++ +P A V+ +V LAK
Sbjct: 69 QRQWLDAWLDRL--GKVPACKQPPVLRWLLHLGLYQILRMQRIPAAAAVNTSVELAKTGK 126
Query: 184 RPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQ 243
+VNGILR + +D + LE D A AR LA S P+W+V + + G+
Sbjct: 127 LARLAPVVNGILRAALRARDAGMV---LLEPEDSA-AR-LAQAESLPLWLVEQLLVWRGE 181
Query: 244 EEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQN 303
A +N P+ LR N R+ +R + + L + V + + V +
Sbjct: 182 VGAELFARASNQVPTLDLRINRRR-TSREKVRLALEAIGVESTPIESCPDGLMVTGSAGD 240
Query: 304 VIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYA 363
+ Q ++G VQD S+ LV ++ PQPG I+D CAAPGGK ++ + G G V+A
Sbjct: 241 LSQWPGYQQGHWCVQDRSSQLVAPLLRPQPGDRILDACAAPGGKATHLVELMGGSGEVWA 300
Query: 364 IDINKGRL-RILNETAKLHQ--VNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVL 420
+D + GRL R+ + A+L +N+++ ++L + ++L+DAPCSGLG L
Sbjct: 301 VDRSAGRLKRLADNAARLGGDCLNALVADA-SNLLAVKPSWRGSFQRILVDAPCSGLGTL 359
Query: 421 SK 422
++
Sbjct: 360 AR 361
>gi|223932608|ref|ZP_03624608.1| sun protein [Streptococcus suis 89/1591]
gi|386583538|ref|YP_006079941.1| sun protein [Streptococcus suis D9]
gi|223898718|gb|EEF65079.1| sun protein [Streptococcus suis 89/1591]
gi|353735684|gb|AER16693.1| sun protein [Streptococcus suis D9]
Length = 436
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 99/320 (30%), Positives = 158/320 (49%), Gaps = 28/320 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L +D L T++V GT+ + L+ + D + ++ + +L + Y++V LD
Sbjct: 39 LSAQDKGLATELVYGTVSRKITLEWYLAHFIEDRE---KLDTWIYYLLMLSLYQLVYLDK 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +AVV+E V +AK +PG VN ILRK+ ++LP P + + + + L+
Sbjct: 96 LPTHAVVNEAVNIAK--RKPGTDKFVNAILRKI----SQSTLPNP---ADIKRKNKRLSV 146
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
YS PVW+V+ G E A K+ + S+R + V R +
Sbjct: 147 QYSVPVWLVQTLIAEYGDERAEKIFQSLHDRNKASVRVTDGQQVER-----------LAE 195
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGL--LKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
EL + V + AG K+GL +QDE++ LV +D Q + I+D CAA
Sbjct: 196 ELGAQHSQLSPVGLVKSHGHFAGTDHFKKGLITIQDETSQLVAPTLDIQGDEIILDACAA 255
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL-RTFADNST 402
PGGKT +MAS L+ G VYA+D+ +L ++ E A + I T D R +
Sbjct: 256 PGGKTCHMASYLT-DGKVYALDLYDHKLNLIEENAHRLGLEDKIETKGLDASRVHEEFGP 314
Query: 403 VKCDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG+G++ +
Sbjct: 315 DTFDKILVDAPCSGIGLIRR 334
>gi|229104427|ref|ZP_04235096.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock3-28]
gi|228679125|gb|EEL33333.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock3-28]
Length = 354
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 137/259 (52%), Gaps = 14/259 (5%)
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL-EGNDRAQARALA 224
MP A + E V +AK G +VNG+LR + +P L E D + A+A
Sbjct: 1 MPERAAIHEAVEIAKRRGHKGISGMVNGVLRSI------QREGVPSLDEIKDPVERLAIA 54
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
T SHPVW+V+ W G E A K+ N P + R N K VT + + L +
Sbjct: 55 T--SHPVWLVQDWASEYGLETAEKMCEVNMLPPVPTARVNVDK-VTVEEAIELLASEGIE 111
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
+ ++ I+++ G NV K+G ++QDES+ LV +DP G++++D CAAP
Sbjct: 112 AKSGDLSNDAIQIERG--NVAHTEAFKKGFLSIQDESSMLVARALDPNEGETVLDSCAAP 169
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STV 403
GGKT ++A L G G V ++D++ ++R++ + A+ + + I T D R ++ +
Sbjct: 170 GGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLEN-IETKALDARKVQEHFANE 228
Query: 404 KCDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 229 TFDKILVDAPCSGFGVIRR 247
>gi|88809208|ref|ZP_01124717.1| Sun protein (Fmu protein) [Synechococcus sp. WH 7805]
gi|88787150|gb|EAR18308.1| Sun protein (Fmu protein) [Synechococcus sp. WH 7805]
Length = 430
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 104/364 (28%), Positives = 172/364 (47%), Gaps = 33/364 (9%)
Query: 65 AVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIR 124
A+ ++ GA+AD+ +ER L R L D L T++ GTIR
Sbjct: 2 ALEVLEAVAAGAYADV--------------ALERAL--RQHPLQAADRGLATELAYGTIR 45
Query: 125 WRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVAL 183
WR++LD + L + P L +L +G Y++++++ +PP A V+ +V LAK
Sbjct: 46 WRQWLDAWLDKL--GKVPARKQPPRLRWLLHLGLYQVLRMERIPPAAAVNTSVELAKGGP 103
Query: 184 RPGAGNLVNGILRKLVLLKD-NNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLG 242
+VNG+LR + +D + L P + AQ ++L P+W R ++ G
Sbjct: 104 LARLAPVVNGLLRAALRARDAGDGLVRPSEPEMELAQDQSL------PLWFTRDLLRWCG 157
Query: 243 QEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQ 302
+A ++ N P LR N R + A++ + +P + ++V
Sbjct: 158 PVQAAQVAQACNQVPPLDLRIN-RLRASPAEMASRFAEHCMPTAPIPGCPDGLQVLDPAG 216
Query: 303 NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVY 362
++ Q EG VQD +A V ++ + GQ ++D CAAPGGK ++A + QG V+
Sbjct: 217 DLRQWPGFDEGYWCVQDRAAQWVAPLLAVEAGQRVLDACAAPGGKATHLAELMGDQGEVW 276
Query: 363 AIDINKGRL-RILNETAKLHQVNSVIRTIHADLRTFADNST---VKCDKVLLDAPCSGLG 418
A+D + GRL R+ ++L + I + AD D++LLDAPCSGLG
Sbjct: 277 AVDRSPGRLQRVAANASRLG--SHCIHALAADASQLLQQRPQWMASFDRILLDAPCSGLG 334
Query: 419 VLSK 422
L++
Sbjct: 335 TLAR 338
>gi|329921088|ref|ZP_08277611.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners SPIN 1401G]
gi|328934995|gb|EGG31484.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners SPIN 1401G]
Length = 437
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 104/352 (29%), Positives = 175/352 (49%), Gaps = 36/352 (10%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L T IV GT++++ YL++ + L + + PLLL + Y+ LD +P
Sbjct: 40 DKALTTQIVYGTVQYKLYLEYQLKSLVKTKLKEDYLWPLLL----MSAYQYFFLDKIPTA 95
Query: 170 AVVDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIY 227
++VDE +LAK G+ + LVNGILR LV + LP E D Q ++ Y
Sbjct: 96 SIVDEANKLAKSYSPKGSQSYRLVNGILRSLV--RRGEILP----EEKDDVQYMSIK--Y 147
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHEL 287
S+P W+V+ G+ + I ++ N S+R +++ D ++ K+ E
Sbjct: 148 SYPQWLVKYCLDNFGKAKTISILQAGNMPSVNSIRI---ADMSKKDEILH----KLTTEY 200
Query: 288 SLHLDEFIRVKTGLQN--VIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ + L + + + L K+GL +QD +A LVV + + + ++D C+APG
Sbjct: 201 KISISNLTNHNVNLDHGSITNSQLFKDGLITIQDSAASLVVDAFNFKGDEKVLDACSAPG 260
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNET-AKLHQVNSVIRTIHADLRTFADNSTVK 404
GKT +A L+ G V+A+DI++ +L ++ +T +LHQ +I + +
Sbjct: 261 GKTAQIAEYLT-TGKVFALDIHQKKLNLVKQTLTRLHQDQKLIMKALDARKVNEYFFGQQ 319
Query: 405 CDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
DK+L+DAPCSGLG++ R +RY K ++HL E +Y +L
Sbjct: 320 FDKILVDAPCSGLGLI----------RRKPEVRYEKQMEDLKHLSEIQYNIL 361
>gi|15924207|ref|NP_371741.1| RNA-binding Sun protein [Staphylococcus aureus subsp. aureus Mu50]
gi|15926800|ref|NP_374333.1| hypothetical protein SA1060 [Staphylococcus aureus subsp. aureus
N315]
gi|156979538|ref|YP_001441797.1| hypothetical protein SAHV_1207 [Staphylococcus aureus subsp. aureus
Mu3]
gi|387150360|ref|YP_005741924.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus 04-02981]
gi|13701017|dbj|BAB42312.1| SA1060 [Staphylococcus aureus subsp. aureus N315]
gi|14246987|dbj|BAB57379.1| similar to RNA-binding Sun protein [Staphylococcus aureus subsp.
aureus Mu50]
gi|156721673|dbj|BAF78090.1| hypothetical protein SAHV_1207 [Staphylococcus aureus subsp. aureus
Mu3]
gi|285816899|gb|ADC37386.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus 04-02981]
Length = 461
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 101/330 (30%), Positives = 168/330 (50%), Gaps = 48/330 (14%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 61 ELNAMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 113
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 114 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 164
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQ 277
+ +A YS P W++ W + G EE ++ S ++RAN +TRA D++ +
Sbjct: 165 KRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTSTTVRAN----LTRASLDDIIEK 220
Query: 278 LNL----LKVPHELS--LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
L ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 221 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 272
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 390
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 273 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAF 330
Query: 391 HADLRTFADNSTVKCDKVLLDAPCSGLGVL 420
D D + DK+L+DAPCSGLGV+
Sbjct: 331 QHDATKPYDKT---YDKILVDAPCSGLGVM 357
>gi|260437316|ref|ZP_05791132.1| ribosomal RNA small subunit methyltransferase B [Butyrivibrio
crossotus DSM 2876]
gi|292810228|gb|EFF69433.1| ribosomal RNA small subunit methyltransferase B [Butyrivibrio
crossotus DSM 2876]
Length = 443
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 89/318 (27%), Positives = 161/318 (50%), Gaps = 20/318 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD+ D ++ + GT+ + LD++I L + + M+P++ ILR+ Y+++ ++
Sbjct: 39 LDNIDRSFISRTILGTVERKITLDYIINLF--SKTPVNKMKPVIRNILRMSTYQLIYMEG 96
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+ +AV +E VRL+ VNG+LR + ++ N + +P + L
Sbjct: 97 VKDFAVCNEAVRLSVKKGFTALKGFVNGVLRTIA--REKNKIEMP----------QELWL 144
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
YS P W+V +W K G+E ++ S ++R N TR +LV +L V
Sbjct: 145 KYSTPGWIVDKWLKEYGKENTEAILKAQYSKRPLTVRCNFNH-CTREELVKRLTAENVRA 203
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
++ D + ++ G + + G VQD S+ +V ++P+ ++D CAAPG
Sbjct: 204 KVIEEPDCALEIE-GFDYLNKLNTFANGDFFVQDLSSMMVCYAINPEKDSYVIDLCAAPG 262
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHADLRTFADNSTVK 404
GK+L++A + G V A D++ ++ ++NE +L+ N I+ + D ++S K
Sbjct: 263 GKSLHIAEFMDNTGFVEARDVSDNKVMMINENIDRLNLCN--IKAVVKDATVKWEDSVEK 320
Query: 405 CDKVLLDAPCSGLGVLSK 422
D V+ D PCSGLG+L+K
Sbjct: 321 ADVVIADLPCSGLGILNK 338
>gi|312793229|ref|YP_004026152.1| sun protein [Caldicellulosiruptor kristjanssonii 177R1B]
gi|312180369|gb|ADQ40539.1| sun protein [Caldicellulosiruptor kristjanssonii 177R1B]
Length = 410
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/324 (28%), Positives = 160/324 (49%), Gaps = 16/324 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F K +++D L ++V G +R++ +D+ I + + +L ILR+ YE+
Sbjct: 8 FHQKLKNEKDRALFVELVHGVLRYKNLIDYYINFVAKK----GVKDRRILNILRVATYEL 63
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ L+ +P YA V+E +A + P VN ILR ++ K+ L +++ D
Sbjct: 64 LFLEKIPEYATVNEACEIAS-KISPHLKAFVNAILRNIIRNKNQIEESLERIKDVDYKSY 122
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
++ S+P +++ + G E+ +K++ + N+ P S++ N++K L +L
Sbjct: 123 VSIKL--SYPRFLIDYLEESYGLEKTLKILEFLNTKPPQSIKINTKKTDVNT-LTQELEK 179
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAV--VDPQPGQSIV 338
+E++ H +E I V G N+ + L KEG QD ++ LVV D + + ++
Sbjct: 180 NGFKYEINSHNNEIIHVLKG--NIKETELYKEGYFYFQDLASSLVVKFNQEDFKRAKKVI 237
Query: 339 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398
D CAAPGGKT A + G V A DIN+ +L +L E +++I +D F
Sbjct: 238 DLCAAPGGKTFNCAEVID--GFVVACDINEHKLDVLRENILRLGFDNII-VAKSDAEVFN 294
Query: 399 DNSTVKCDKVLLDAPCSGLGVLSK 422
+ K D V+ D PC+G G + K
Sbjct: 295 PDFAEKFDIVIADLPCTGFGAIRK 318
>gi|384547461|ref|YP_005736714.1| RNA-binding protein [Staphylococcus aureus subsp. aureus ED133]
gi|387780326|ref|YP_005755124.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus LGA251]
gi|417903350|ref|ZP_12547197.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21269]
gi|298694510|gb|ADI97732.1| probable RNA-binding protein [Staphylococcus aureus subsp. aureus
ED133]
gi|341849971|gb|EGS91104.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21269]
gi|344177428|emb|CCC87896.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus LGA251]
Length = 435
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 102/330 (30%), Positives = 168/330 (50%), Gaps = 48/330 (14%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNVMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQ 277
+ +A YS P W++ W + G EE ++ S S+RAN +TRA D++ +
Sbjct: 139 KRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTSTSVRAN----LTRASLDDIIEK 194
Query: 278 LNL----LKVPHELS--LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
L ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 390
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 247 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAF 304
Query: 391 HADLRTFADNSTVKCDKVLLDAPCSGLGVL 420
D D + DK+L+DAPCSGLGV+
Sbjct: 305 QHDATKPYDKT---YDKILVDAPCSGLGVM 331
>gi|159902963|ref|YP_001550307.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9211]
gi|159888139|gb|ABX08353.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9211]
Length = 432
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 92/320 (28%), Positives = 165/320 (51%), Gaps = 19/320 (5%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L T+I G+IR R+YLD I L + + P L +L IG Y+I ++ +P
Sbjct: 36 DKALTTEIAYGSIRQRKYLDSWIDNLA--KISALKQPPRLRWLLHIGLYQIFLMERIPVS 93
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKD-NNSLPLPKLEGNDRAQARALATIYS 228
AVV+ V+LAK ++VNGILR + +++ LP + AQ+ +S
Sbjct: 94 AVVNTTVQLAKNNNLNKLSSVVNGILRNAIRIREAGQGLPFKSNASEELAQS------FS 147
Query: 229 HPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA--DLVMQLNLLKVPHE 286
P+W+ + G++ A + + N P+F LR N K R+ ++ + + +P +
Sbjct: 148 IPLWLANSLITWRGEQGAKSIAMAFNQPPAFDLRINRCKTNPRSVQEIFDKFGITSLPIK 207
Query: 287 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 346
+++ +G+ ++ + + G +VQD S+ + +++ +PG I+D C+APGG
Sbjct: 208 ---GCTSGLQITSGMGDLRKWPGYEGGEWSVQDRSSQWIAPLLEAEPGDRILDACSAPGG 264
Query: 347 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---NSTV 403
K ++A + G ++A+D + RL+ ++E A +NS ++ + AD D +
Sbjct: 265 KATHLAELIDDNGEIWAVDRSPKRLQKVSENATRLGLNS-LKCLAADASMLLDCKPHWKG 323
Query: 404 KCDKVLLDAPCSGLGVLSKT 423
++L+DAPCSGLG LS+
Sbjct: 324 YFQRILVDAPCSGLGTLSRN 343
>gi|332799419|ref|YP_004460918.1| sun protein [Tepidanaerobacter acetatoxydans Re1]
gi|438002578|ref|YP_007272321.1| Ribosomal RNA small subunit methyltransferase B [Tepidanaerobacter
acetatoxydans Re1]
gi|332697154|gb|AEE91611.1| sun protein [Tepidanaerobacter acetatoxydans Re1]
gi|432179372|emb|CCP26345.1| Ribosomal RNA small subunit methyltransferase B [Tepidanaerobacter
acetatoxydans Re1]
Length = 448
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 89/320 (27%), Positives = 155/320 (48%), Gaps = 11/320 (3%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
T D+ +D LVT++V G ++ +D++I + S + P + +R+G Y+
Sbjct: 30 TSDMSLKDRALVTELVNGVVQNLLRIDYIISQFSKID--LSKISPFVKNAIRVGIYQTFF 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
LD +P +A V+E+V L K A N N ILR ++ +D P + +
Sbjct: 88 LDRVPDFAAVNESVSLVKKYEGKRAANFTNAILRNVLRKRDKIVYP-----NKNINIEKY 142
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
L+ YS P W+++RW + + +L + N P +R N+ R +L QL+
Sbjct: 143 LSIYYSFPSWLIQRWIELFDKNFTEELCMALNERPKPCIRVNTLVA-DREELEKQLSAEG 201
Query: 283 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
L +E + + + Q +GL A QDES+ + + ++D A
Sbjct: 202 ARVAPGLFTEETLYILDS-PPIAQLESFNKGLFAPQDESSIIASLAAGVKSNDKVLDVAA 260
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402
APGGKT +MA+ + +G + A DI+ R+R++ + + + V+ + + + N
Sbjct: 261 APGGKTAHMAAIMQNKGEIIAWDIHPHRVRLIEQNCRRLKATIVVPEVR-NAKIPDKNMF 319
Query: 403 VKCDKVLLDAPCSGLGVLSK 422
K DKV++DAPCSGLGV+ +
Sbjct: 320 RKFDKVIIDAPCSGLGVIRR 339
>gi|420185478|ref|ZP_14691570.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM040]
gi|394254464|gb|EJD99433.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM040]
Length = 435
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 97/325 (29%), Positives = 166/325 (51%), Gaps = 34/325 (10%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEI 161
T +++ D L T++V GTI+ + LD+L+ K F + ++ + Q+L + Y+
Sbjct: 33 TNNINTVDKNLFTELVYGTIKRKYTLDYLL-------KPFIKTKIKSWVRQLLWMSLYQY 85
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ LD +P +A++ E V +AK GN+VNGILR ++ + LP E D +
Sbjct: 86 LYLDKIPNHAIIHEAVDIAKKRGGYHTGNIVNGILRTVMRTE------LPSFEDIDDIKK 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN-SRKGVTRADLVMQLN 279
R +A YS P W+V W + G E+ + + ++RAN SR + ++
Sbjct: 140 R-IAIQYSLPKWIVDHWGTHFGVEKTENIARSFLEPVATTVRANISRDSIDSIISKLEQE 198
Query: 280 LLKVPHE----LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
V + LH+ +G+ V+ + KEG ++QD+S+ +V V++
Sbjct: 199 GYHVKKDDMLPFCLHI-------SGMP-VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDD 250
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
++D C+APGGK +MA LS +G V A DI++ ++ ++ + ++N+ I+ D
Sbjct: 251 KVLDACSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQNITKLKLNN-IKAFQHDAT 309
Query: 396 TFADNSTVKCDKVLLDAPCSGLGVL 420
D DK+L+DAPCSGLGVL
Sbjct: 310 EVYDKM---YDKILVDAPCSGLGVL 331
>gi|319937497|ref|ZP_08011902.1| SUN protein [Coprobacillus sp. 29_1]
gi|319807337|gb|EFW03946.1| SUN protein [Coprobacillus sp. 29_1]
Length = 416
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 95/322 (29%), Positives = 165/322 (51%), Gaps = 22/322 (6%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F+ + + +T +V GT++ YL++L L H + + E +LL + Y+
Sbjct: 28 FQNQQISREQKDFITRVVYGTVQNMLYLEYL--LEPHLKTRVKAYEKMLL---LMSLYQH 82
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+D +P YA+V+E VRLAK +N +L + SL E +D +
Sbjct: 83 EFMDSIPDYAIVNEAVRLAKKKKGTKTAQFINAVLNHA--FHQHRSLD----ELDDEKER 136
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
++ T SHP+W+V+ +K G+EE K+ +N P S R N+ K T+ + +++ ++
Sbjct: 137 LSIET--SHPLWLVKMLSKQYGEEETRKICYADNEVPYKSARVNTLK--TKKESLLKDDM 192
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
E L D + + G N+ +EGL +QDES+ +V +++PQP + I+D
Sbjct: 193 WS---EGQLSPD-CLYYQRG--NIANTKYYQEGLVTIQDESSQMVARLLNPQPHEYILDM 246
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
C APGGKT ++A+ + QG + A D+ + ++ ++ E + V+ V +
Sbjct: 247 CCAPGGKTSHLAALMKNQGRIDAYDLYEHKIPLVKEQMQRLGVDIVHVQAYDSTHLIELY 306
Query: 401 STVKCDKVLLDAPCSGLGVLSK 422
D++LLDAPCSGLGVL++
Sbjct: 307 PADTFDRILLDAPCSGLGVLAR 328
>gi|229092908|ref|ZP_04224042.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus
Rock3-42]
gi|228690530|gb|EEL44313.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus
Rock3-42]
Length = 360
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 135/258 (52%), Gaps = 12/258 (4%)
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+AT
Sbjct: 7 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT 61
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHPVW+V+ WT G E A K+ N P + R N K +T + + L +
Sbjct: 62 --SHPVWLVQEWTAEYGLETAEKMCEMNMLPPVPTARVNVDK-ITVEEAITLLASEGIEA 118
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ D+ I+++ G NV K+G ++QDES+ LV ++P G I+D CAAPG
Sbjct: 119 KRGDLSDDAIQIEKG--NVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVILDSCAAPG 176
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404
GKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 177 GKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFANET 235
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 236 FDKILVDAPCSGFGVIRR 253
>gi|408423415|emb|CCJ10826.1| Similar to RNA-binding Sun protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408425405|emb|CCJ12792.1| Similar to RNA-binding Sun protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408427393|emb|CCJ14756.1| Similar to RNA-binding Sun protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408429380|emb|CCJ26545.1| Similar to RNA-binding Sun protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408431368|emb|CCJ18683.1| Similar to RNA-binding Sun protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408433362|emb|CCJ20647.1| Similar to RNA-binding Sun protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408435353|emb|CCJ22613.1| Similar to RNA-binding Sun protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408437338|emb|CCJ24581.1| Similar to RNA-binding Sun protein [Staphylococcus aureus subsp.
aureus ST228]
Length = 431
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 101/330 (30%), Positives = 168/330 (50%), Gaps = 48/330 (14%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 31 ELNAMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 83
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 84 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 134
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQ 277
+ +A YS P W++ W + G EE ++ S ++RAN +TRA D++ +
Sbjct: 135 KRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTSTTVRAN----LTRASLDDIIEK 190
Query: 278 LNL----LKVPHELS--LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
L ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 191 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 242
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 390
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 243 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAF 300
Query: 391 HADLRTFADNSTVKCDKVLLDAPCSGLGVL 420
D D + DK+L+DAPCSGLGV+
Sbjct: 301 QHDATKPYDKT---YDKILVDAPCSGLGVM 327
>gi|379020926|ref|YP_005297588.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus M013]
gi|418950782|ref|ZP_13502925.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-160]
gi|359830235|gb|AEV78213.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus M013]
gi|375375613|gb|EHS79186.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-160]
Length = 435
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 103/331 (31%), Positives = 169/331 (51%), Gaps = 50/331 (15%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNVMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQ 277
+ +A YS P W++ W + G EE ++ S ++RAN +TRA D++ +
Sbjct: 139 KRMAIEYSMPKWIIDHWATHFGLEETETILQSFLETTSTTVRAN----LTRASLDDIIEK 194
Query: 278 L-----NLLKVPHELS--LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVD 330
L N+ K H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYNVEK-DHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMN 245
Query: 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRT 389
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 246 VDRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKA 303
Query: 390 IHADLRTFADNSTVKCDKVLLDAPCSGLGVL 420
D D + DK+L+DAPCSGLGV+
Sbjct: 304 FQHDATKPYDKT---YDKILVDAPCSGLGVM 331
>gi|344995747|ref|YP_004798090.1| sun protein [Caldicellulosiruptor lactoaceticus 6A]
gi|343963966|gb|AEM73113.1| sun protein [Caldicellulosiruptor lactoaceticus 6A]
Length = 410
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 91/324 (28%), Positives = 159/324 (49%), Gaps = 16/324 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F K +++D L ++V G +R++ +D+ I + + +L ILR+ YE+
Sbjct: 8 FHQKLKNEKDRALFVELVHGVLRYKNLIDYYINFVAKK----GVKDRRILNILRVATYEL 63
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ L+ +P YA V E +A + P VN ILR ++ K+ L +++ D
Sbjct: 64 LFLEKIPEYATVSEACEIAS-KISPHLKAFVNAILRNIIRNKNQIEESLERIKDVDYKSY 122
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
++ S+P +++ + G E+ +K++ + N+ P S++ N++K L +L
Sbjct: 123 VSIKL--SYPRFLIDYLEESYGLEKTLKILEFLNTKPPQSIKINTKKTDVNT-LTQELEK 179
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAV--VDPQPGQSIV 338
+E++ H +E I V G N+ + L KEG QD ++ LVV D + + ++
Sbjct: 180 NGFKYEINSHNNEIIHVLKG--NIKETELYKEGYFYFQDLASSLVVKFNQEDFKRAKKVI 237
Query: 339 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398
D CAAPGGKT A + G V A DIN+ +L +L E +++I +D F
Sbjct: 238 DLCAAPGGKTFNCAEVID--GFVVACDINEHKLDVLRENILRLGFDNII-VAKSDAEVFN 294
Query: 399 DNSTVKCDKVLLDAPCSGLGVLSK 422
+ K D V+ D PC+G G + K
Sbjct: 295 PDFAEKFDIVIADLPCTGFGAIRK 318
>gi|57651786|ref|YP_186092.1| sun protein [Staphylococcus aureus subsp. aureus COL]
gi|148267708|ref|YP_001246651.1| sun protein [Staphylococcus aureus subsp. aureus JH9]
gi|150393766|ref|YP_001316441.1| sun protein [Staphylococcus aureus subsp. aureus JH1]
gi|151221339|ref|YP_001332161.1| hypothetical protein NWMN_1127 [Staphylococcus aureus subsp. aureus
str. Newman]
gi|161509389|ref|YP_001575048.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|221142007|ref|ZP_03566500.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|253315575|ref|ZP_04838788.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|255006004|ref|ZP_05144605.2| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257795727|ref|ZP_05644706.1| ribosomal small subunit methyltransferase B [Staphylococcus aureus
A9781]
gi|258415951|ref|ZP_05682221.1| RNA-binding Sun protein [Staphylococcus aureus A9763]
gi|258419698|ref|ZP_05682665.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A9719]
gi|258438740|ref|ZP_05689893.1| ribosomal RNA small subunit methyltransferase [Staphylococcus
aureus A9299]
gi|258444554|ref|ZP_05692883.1| ribosomal RNA small subunit methyltransferase [Staphylococcus
aureus A8115]
gi|258447613|ref|ZP_05695757.1| RNA-binding Sun protein [Staphylococcus aureus A6300]
gi|258449455|ref|ZP_05697558.1| RNA-binding Sun protein [Staphylococcus aureus A6224]
gi|258452514|ref|ZP_05700520.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A5948]
gi|258454834|ref|ZP_05702798.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A5937]
gi|269202832|ref|YP_003282101.1| sun protein [Staphylococcus aureus subsp. aureus ED98]
gi|282892703|ref|ZP_06300938.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A8117]
gi|282919999|ref|ZP_06327728.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A9765]
gi|282927557|ref|ZP_06335173.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A10102]
gi|284024141|ref|ZP_06378539.1| sun protein [Staphylococcus aureus subsp. aureus 132]
gi|294848210|ref|ZP_06788957.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A9754]
gi|296275238|ref|ZP_06857745.1| sun protein [Staphylococcus aureus subsp. aureus MR1]
gi|297245959|ref|ZP_06929818.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A8796]
gi|384861811|ref|YP_005744531.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus str. JKD6008]
gi|384864444|ref|YP_005749803.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus ECT-R 2]
gi|384869751|ref|YP_005752465.1| SA1060 protein [Staphylococcus aureus subsp. aureus T0131]
gi|415686404|ref|ZP_11450493.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus CGS01]
gi|415691064|ref|ZP_11453303.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus CGS03]
gi|417650916|ref|ZP_12300679.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21172]
gi|417892141|ref|ZP_12536195.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21201]
gi|418286418|ref|ZP_12899064.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21209]
gi|418317747|ref|ZP_12929163.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21232]
gi|418321722|ref|ZP_12933061.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus VCU006]
gi|418424357|ref|ZP_12997479.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus VRS1]
gi|418427352|ref|ZP_13000364.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus VRS2]
gi|418430193|ref|ZP_13003109.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus VRS3a]
gi|418433154|ref|ZP_13005934.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus VRS4]
gi|418436829|ref|ZP_13008631.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS5]
gi|418439700|ref|ZP_13011408.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS6]
gi|418442753|ref|ZP_13014355.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus VRS7]
gi|418445812|ref|ZP_13017288.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS8]
gi|418448756|ref|ZP_13020148.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS9]
gi|418451580|ref|ZP_13022914.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS10]
gi|418454636|ref|ZP_13025898.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS11a]
gi|418457512|ref|ZP_13028715.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS11b]
gi|418569097|ref|ZP_13133437.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21272]
gi|418570824|ref|ZP_13135085.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21283]
gi|418579048|ref|ZP_13143143.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1114]
gi|418599666|ref|ZP_13163146.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21343]
gi|418642849|ref|ZP_13205035.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-24]
gi|418647673|ref|ZP_13209736.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-88]
gi|418658916|ref|ZP_13220613.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-111]
gi|418663118|ref|ZP_13224643.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-122]
gi|418873545|ref|ZP_13427840.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-125]
gi|418875152|ref|ZP_13429412.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIGC93]
gi|418878066|ref|ZP_13432301.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1165]
gi|418880894|ref|ZP_13435113.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1213]
gi|418883823|ref|ZP_13438018.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1769]
gi|418886478|ref|ZP_13440626.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1150]
gi|418894916|ref|ZP_13449011.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1057]
gi|418903426|ref|ZP_13457467.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1770]
gi|418906152|ref|ZP_13460179.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIGC345D]
gi|418911823|ref|ZP_13465806.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG547]
gi|418920294|ref|ZP_13474227.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIGC348]
gi|418925450|ref|ZP_13479352.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG2018]
gi|418928474|ref|ZP_13482360.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1612]
gi|418931287|ref|ZP_13485128.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1750]
gi|418946950|ref|ZP_13499349.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-157]
gi|418955443|ref|ZP_13507383.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-189]
gi|418991079|ref|ZP_13538740.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1096]
gi|419775209|ref|ZP_14301151.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CO-23]
gi|419784875|ref|ZP_14310634.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-M]
gi|422742333|ref|ZP_16796339.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus MRSA177]
gi|422745553|ref|ZP_16799492.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus MRSA131]
gi|424768720|ref|ZP_18195980.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CM05]
gi|424785047|ref|ZP_18211850.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus CN79]
gi|440707204|ref|ZP_20887904.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21282]
gi|443636962|ref|ZP_21121055.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21236]
gi|448744035|ref|ZP_21725939.1| sun protein [Staphylococcus aureus KT/Y21]
gi|57285972|gb|AAW38066.1| sun protein [Staphylococcus aureus subsp. aureus COL]
gi|147740777|gb|ABQ49075.1| sun protein [Staphylococcus aureus subsp. aureus JH9]
gi|149946218|gb|ABR52154.1| sun protein [Staphylococcus aureus subsp. aureus JH1]
gi|150374139|dbj|BAF67399.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|160368198|gb|ABX29169.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|257789699|gb|EEV28039.1| ribosomal small subunit methyltransferase B [Staphylococcus aureus
A9781]
gi|257839287|gb|EEV63761.1| RNA-binding Sun protein [Staphylococcus aureus A9763]
gi|257844283|gb|EEV68665.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A9719]
gi|257847999|gb|EEV71992.1| ribosomal RNA small subunit methyltransferase [Staphylococcus
aureus A9299]
gi|257850047|gb|EEV74000.1| ribosomal RNA small subunit methyltransferase [Staphylococcus
aureus A8115]
gi|257853804|gb|EEV76763.1| RNA-binding Sun protein [Staphylococcus aureus A6300]
gi|257857443|gb|EEV80341.1| RNA-binding Sun protein [Staphylococcus aureus A6224]
gi|257859732|gb|EEV82574.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A5948]
gi|257863217|gb|EEV85981.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A5937]
gi|262075122|gb|ACY11095.1| sun protein [Staphylococcus aureus subsp. aureus ED98]
gi|282590560|gb|EFB95637.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A10102]
gi|282594715|gb|EFB99699.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A9765]
gi|282764700|gb|EFC04825.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A8117]
gi|294825010|gb|EFG41432.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A9754]
gi|297177123|gb|EFH36377.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A8796]
gi|302751040|gb|ADL65217.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus str. JKD6008]
gi|312829611|emb|CBX34453.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus ECT-R 2]
gi|315131008|gb|EFT86992.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus CGS03]
gi|315198454|gb|EFU28783.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus CGS01]
gi|320140968|gb|EFW32815.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus MRSA131]
gi|320144317|gb|EFW36083.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus MRSA177]
gi|329313886|gb|AEB88299.1| SA1060 protein [Staphylococcus aureus subsp. aureus T0131]
gi|329727100|gb|EGG63556.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21172]
gi|341858108|gb|EGS98909.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21201]
gi|365167126|gb|EHM58602.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21209]
gi|365224337|gb|EHM65602.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus VCU006]
gi|365245015|gb|EHM85667.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21232]
gi|371978282|gb|EHO95532.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21272]
gi|371983004|gb|EHP00152.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21283]
gi|374396324|gb|EHQ67565.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21343]
gi|375015962|gb|EHS09606.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-24]
gi|375029383|gb|EHS22711.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-88]
gi|375034751|gb|EHS27901.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-122]
gi|375037178|gb|EHS30230.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-111]
gi|375366082|gb|EHS70094.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-125]
gi|375370926|gb|EHS74718.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-189]
gi|375377147|gb|EHS80637.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-157]
gi|377694188|gb|EHT18553.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1165]
gi|377694722|gb|EHT19086.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1057]
gi|377697075|gb|EHT21430.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1114]
gi|377714569|gb|EHT38768.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1750]
gi|377714910|gb|EHT39108.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1769]
gi|377723201|gb|EHT47326.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1096]
gi|377725201|gb|EHT49316.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG547]
gi|377725431|gb|EHT49544.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1150]
gi|377731787|gb|EHT55840.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1213]
gi|377738386|gb|EHT62395.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1612]
gi|377742441|gb|EHT66426.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1770]
gi|377744519|gb|EHT68496.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG2018]
gi|377765452|gb|EHT89302.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIGC345D]
gi|377765653|gb|EHT89502.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIGC348]
gi|377770212|gb|EHT93974.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIGC93]
gi|383363633|gb|EID40964.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-M]
gi|383970893|gb|EID86983.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CO-23]
gi|387718588|gb|EIK06546.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus VRS3a]
gi|387718939|gb|EIK06895.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus VRS2]
gi|387720264|gb|EIK08176.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus VRS1]
gi|387725820|gb|EIK13418.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus VRS4]
gi|387727933|gb|EIK15433.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS5]
gi|387730803|gb|EIK18161.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS6]
gi|387735740|gb|EIK22850.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS8]
gi|387737418|gb|EIK24484.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus VRS7]
gi|387737972|gb|EIK25026.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS9]
gi|387744461|gb|EIK31225.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS10]
gi|387745751|gb|EIK32501.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS11a]
gi|387747244|gb|EIK33953.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS11b]
gi|402348490|gb|EJU83477.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CM05]
gi|421956457|gb|EKU08786.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus CN79]
gi|436506243|gb|ELP42076.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21282]
gi|443406939|gb|ELS65509.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21236]
gi|445562631|gb|ELY18798.1| sun protein [Staphylococcus aureus KT/Y21]
Length = 435
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 101/330 (30%), Positives = 168/330 (50%), Gaps = 48/330 (14%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNAMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQ 277
+ +A YS P W++ W + G EE ++ S ++RAN +TRA D++ +
Sbjct: 139 KRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTSTTVRAN----LTRASLDDIIEK 194
Query: 278 LNL----LKVPHELS--LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
L ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 390
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 247 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAF 304
Query: 391 HADLRTFADNSTVKCDKVLLDAPCSGLGVL 420
D D + DK+L+DAPCSGLGV+
Sbjct: 305 QHDATKPYDKT---YDKILVDAPCSGLGVM 331
>gi|282916466|ref|ZP_06324228.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus D139]
gi|283770278|ref|ZP_06343170.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus H19]
gi|282319906|gb|EFB50254.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus D139]
gi|283460425|gb|EFC07515.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus H19]
Length = 435
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 102/330 (30%), Positives = 168/330 (50%), Gaps = 48/330 (14%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GTI+ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNIMDKALFTEIVYGTIKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQ 277
+ +A YS P W++ W + G EE ++ S ++RAN +TRA D++ +
Sbjct: 139 KRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTSTTVRAN----LTRASLDDIIEK 194
Query: 278 LNL----LKVPHELS--LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
L ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 390
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 247 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAF 304
Query: 391 HADLRTFADNSTVKCDKVLLDAPCSGLGVL 420
D D + DK+L+DAPCSGLGV+
Sbjct: 305 QHDATKPYDKT---YDKILVDAPCSGLGVM 331
>gi|196230011|ref|ZP_03128874.1| sun protein [Chthoniobacter flavus Ellin428]
gi|196225608|gb|EDY20115.1| sun protein [Chthoniobacter flavus Ellin428]
Length = 410
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 89/279 (31%), Positives = 137/279 (49%), Gaps = 28/279 (10%)
Query: 146 MEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNN 205
++P +LR+G Y+I + P+A V+E+V AL A LVN ILR+ + K+
Sbjct: 68 IDPQTRAVLRLGLYQIFHMRTAPHAAVNESV-----ALGGRARGLVNAILRRALREKE-- 120
Query: 206 SLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANS 265
LE + A + A+ T SHP +++ RW + G E L WNN +RAN
Sbjct: 121 -----ALESDLLAASSAVRT--SHPEFLIARWEEVFGPEATRILCEWNNEPADVHVRANG 173
Query: 266 RKGVTRADLVMQLNLLKVP-HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGL 324
+ L + + P H L++ ++ I + GLC VQD S L
Sbjct: 174 LRVTVGELLRSSTSAMPSPVHPLAIKVEH-----------IPPSWIAMGLCYVQDPSTLL 222
Query: 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 384
++ PQPG++++D CAAPGGKT Y+A + QG + A D+ R+ L E K V
Sbjct: 223 SCDLLAPQPGETVLDACAAPGGKTTYLAQLMHDQGRIIACDLYDSRVARLRENLKRLGV- 281
Query: 385 SVIRTIHAD-LRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
++ R I D ++ D++L+DAPCS GV+ +
Sbjct: 282 TIARAIRHDCMQAGPPLDPDSFDRILVDAPCSNTGVIRR 320
>gi|87161915|ref|YP_493807.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus USA300_FPR3757]
gi|87127889|gb|ABD22403.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus USA300_FPR3757]
Length = 435
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 101/330 (30%), Positives = 168/330 (50%), Gaps = 48/330 (14%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNAMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQ 277
+ +A YS P W++ W + G EE ++ S ++RAN +TRA D++ +
Sbjct: 139 KRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTSTTVRAN----LTRASLDDIIEK 194
Query: 278 LNL----LKVPHELS--LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
L ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 390
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 247 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAF 304
Query: 391 HADLRTFADNSTVKCDKVLLDAPCSGLGVL 420
D D + DK+L+DAPCSGLGV+
Sbjct: 305 QYDATKPYDKT---YDKILVDAPCSGLGVM 331
>gi|392971815|ref|ZP_10337208.1| putative RNA methyltransferase [Staphylococcus equorum subsp.
equorum Mu2]
gi|392510354|emb|CCI60498.1| putative RNA methyltransferase [Staphylococcus equorum subsp.
equorum Mu2]
Length = 437
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 92/332 (27%), Positives = 173/332 (52%), Gaps = 52/332 (15%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L+ D L T++V GT++ + LD+L+ + ++ + Q+L + Y+ V LD
Sbjct: 37 ELNRADKGLFTELVYGTLKRKFSLDYLLKPFVQ-----TKLKGWVRQLLWMSIYQYVYLD 91
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A+++E V +AK P GN+VNGILR ++ + LP +D+ + +A
Sbjct: 92 KVPEHAIINEAVEIAKRKGGPHNGNVVNGILRNIM----RSDLPDFTEITDDK---KRIA 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
YS P W+V W+ + G E+ A + +T+ +++NL ++
Sbjct: 145 IEYSLPKWLVDHWSTHFGIEKT---------------EAIAESFLTKVATTVRVNLTRIS 189
Query: 285 HELSLH---LDEFI-----RVKTGL----QNVIQAGLLKEGLCAVQDESAGLVVAVVDPQ 332
E ++ D++I + T L + +I++ + K+GL ++QD+S+ V ++
Sbjct: 190 IEDAIRRLVEDDYIVEQDNEIDTCLHISGKPIIESRMFKDGLVSIQDKSSMFVAELMGLN 249
Query: 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 392
G ++D C+APGGK ++A L+G G + A DI + ++ +++ K ++ +
Sbjct: 250 EGDEVLDACSAPGGKACHIAEVLNGTGHIDATDIYEHKIDLIDFNIKKLRL--------S 301
Query: 393 DLRTFADNSTVK----CDKVLLDAPCSGLGVL 420
++ F ++T K DK+L+DAPCSGLGVL
Sbjct: 302 NISAFEHDATEKYGKVYDKILVDAPCSGLGVL 333
>gi|82750821|ref|YP_416562.1| RNA-binding protein [Staphylococcus aureus RF122]
gi|82656352|emb|CAI80770.1| probable RNA-binding protein [Staphylococcus aureus RF122]
Length = 435
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 101/330 (30%), Positives = 168/330 (50%), Gaps = 48/330 (14%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNAMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQ 277
+ +A YS P W++ W + G EE ++ S ++RAN +TRA D++ +
Sbjct: 139 KRMAVEYSMPKWIIDHWATHYGLEETETILQSFLETTSTTVRAN----LTRASLDDIIEK 194
Query: 278 LNL----LKVPHELS--LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
L ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 390
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 247 DRHDHVLDACSAPGGKACHIAEVLMPEGQVGASDIHDHKIDLINFNIKKLRLTN--IKAF 304
Query: 391 HADLRTFADNSTVKCDKVLLDAPCSGLGVL 420
D D + DK+L+DAPCSGLGV+
Sbjct: 305 QHDATKPYDKT---YDKILVDAPCSGLGVM 331
>gi|383453320|ref|YP_005367309.1| ribosomal RNA small subunit methyltransferase B [Corallococcus
coralloides DSM 2259]
gi|380734274|gb|AFE10276.1| ribosomal RNA small subunit methyltransferase B [Corallococcus
coralloides DSM 2259]
Length = 438
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 106/334 (31%), Positives = 155/334 (46%), Gaps = 17/334 (5%)
Query: 90 DNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPL 149
D + V T+ T D RD LVT++ G R + LD+ I ++ ++E
Sbjct: 18 DAYLNVVLDTVLSETPPKDPRDAALVTELTYGATRRQLALDYAITRFA--DRKLDALEDK 75
Query: 150 LLQILRIGFYEIVKLDMPPYAVVDENVR-LAKVALRPGAGNLVNGILRKLVLLKDNNSLP 208
+L LR+G Y++ +P A V E V+ L V L AG VN ILRKL + LP
Sbjct: 76 VLAALRVGAYQLFHTRVPARAAVAETVQALKDVGLARAAG-FVNAILRKL------SELP 128
Query: 209 LPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKG 268
P L + + L+ SHP W+V RW + G+E A ++V NN P+ +RANS K
Sbjct: 129 SPPLP-SQKDPVEYLSVRESHPRWLVERWIRQFGRERAEAMLVANNLPPAVVIRANSAK- 186
Query: 269 VTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAV 328
VTR L+ QL + V + V + V EGL VQDE+A LV
Sbjct: 187 VTRDALLAQLKDVGV-EARATEASPVGIVLPPVGRVEDVYGYAEGLWQVQDEAAQLVGVY 245
Query: 329 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 388
++D CAAPGGK + A V A+D++ +LR + A ++ ++
Sbjct: 246 GAIPESARVLDACAAPGGKACHQAETHD----VVAVDLHANKLRKIEAEAHRLGLSGRLK 301
Query: 389 TIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
D + +++DAPCSGLG L +
Sbjct: 302 AYAHDASEPFPEGWGEFHALVVDAPCSGLGTLRR 335
>gi|304381220|ref|ZP_07363873.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus ATCC BAA-39]
gi|304340203|gb|EFM06144.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus ATCC BAA-39]
Length = 435
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 101/330 (30%), Positives = 168/330 (50%), Gaps = 48/330 (14%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNAMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQ 277
+ +A YS P W++ W + G EE ++ S ++RAN +TRA D++ +
Sbjct: 139 KRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTSTTVRAN----LTRASLDDIIEK 194
Query: 278 LNL----LKVPHELS--LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
L ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYDVEKXHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 390
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 247 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAF 304
Query: 391 HADLRTFADNSTVKCDKVLLDAPCSGLGVL 420
D D + DK+L+DAPCSGLGV+
Sbjct: 305 QHDATKPYDKT---YDKILVDAPCSGLGVM 331
>gi|417891867|ref|ZP_12535924.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21200]
gi|341851153|gb|EGS92082.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21200]
Length = 435
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 101/330 (30%), Positives = 168/330 (50%), Gaps = 48/330 (14%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++P + Q+L + Y+ V
Sbjct: 35 ELNAMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKPWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNKIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQ 277
+ +A YS P W++ W + G E ++ S ++RAN +TRA D++ +
Sbjct: 139 KRMAIEYSMPKWIIDHWATHYGLEGTETILQSFLETTSTTVRAN----LTRASLDDIIEK 194
Query: 278 LNL----LKVPHELS--LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
L ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 390
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 247 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAF 304
Query: 391 HADLRTFADNSTVKCDKVLLDAPCSGLGVL 420
D D + DK+L+DAPCSGLGV+
Sbjct: 305 QHDATKPYDKT---YDKILVDAPCSGLGVM 331
>gi|384549972|ref|YP_005739224.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus JKD6159]
gi|386830752|ref|YP_006237406.1| hypothetical protein SAEMRSA15_10500 [Staphylococcus aureus subsp.
aureus HO 5096 0412]
gi|302332821|gb|ADL23014.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus JKD6159]
gi|385196144|emb|CCG15765.1| hypothetical protein SAEMRSA15_10500 [Staphylococcus aureus subsp.
aureus HO 5096 0412]
Length = 435
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 101/330 (30%), Positives = 168/330 (50%), Gaps = 48/330 (14%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNAMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQ 277
+ +A YS P W++ W + G EE ++ S ++RAN +TRA D++ +
Sbjct: 139 KRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTSTTVRAN----LTRASLDDIIEK 194
Query: 278 LNL----LKVPHELS--LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
L ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 390
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 247 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAF 304
Query: 391 HADLRTFADNSTVKCDKVLLDAPCSGLGVL 420
D D + DK+L+DAPCSGLGV+
Sbjct: 305 QHDATKPYDKT---YDKILVDAPCSGLGVM 331
>gi|259503543|ref|ZP_05746445.1| RNA methyltransferase Sun [Lactobacillus antri DSM 16041]
gi|259168621|gb|EEW53116.1| RNA methyltransferase Sun [Lactobacillus antri DSM 16041]
Length = 448
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 101/322 (31%), Positives = 164/322 (50%), Gaps = 22/322 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L+D D RL T IV GT++ + L++ + +K S +E LLL L Y+ L+
Sbjct: 39 LNDNDRRLATRIVYGTLQRQLTLEYWLQPFVKGKKLDSWVETLLLTAL----YQYQYLER 94
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +AV DE + +AK PG V G+L ++ P+ + R ++ LA
Sbjct: 95 VPDWAVTDETIEIAKQWGNPGIRKFVTGVLHAVL------RQGFPRFD-QLRDESERLAV 147
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR-ADLVMQLNLLKVP 284
+S P W+V GQ +A +++ N +R N+ VT A + QL +
Sbjct: 148 QFSVPRWLVDELVSQYGQSQATRVLQSVNDPARLVVRVNT--AVTDLATVESQLRAAGIE 205
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
+ S + + G ++ + L G VQDESA L V ++ QPG ++D CAAP
Sbjct: 206 FQKSRVAPNALVITKG--ELLGSALFATGQITVQDESAMLAVDSMNVQPGDRVLDACAAP 263
Query: 345 GGKTLYMASCL--SGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHADLRTFADN- 400
GGKT+ +A L + G V A+DI++ + +++ + A ++H + V+ T D R AD
Sbjct: 264 GGKTVQIAERLDPATGGRVDALDIHEHKTKLIQKNASRMHMADRVV-THTLDARRVADEF 322
Query: 401 STVKCDKVLLDAPCSGLGVLSK 422
+ DK+L+DAPCSG+G+L +
Sbjct: 323 ADETFDKILVDAPCSGIGLLRR 344
>gi|357239284|ref|ZP_09126619.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
ictaluri 707-05]
gi|356751853|gb|EHI68983.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
ictaluri 707-05]
Length = 426
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 164/324 (50%), Gaps = 29/324 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K L+D+D L+T+IV GTI + L+ + D ++ + +L I Y+++ L
Sbjct: 24 KGLNDKDKALITEIVYGTISRKLTLEWYLSHYIQDR---DKLDKWVYYLLMISLYQMLYL 80
Query: 165 D-MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
D +P +A+V++ V +AK + GA VN ILR+ PLP++ R R
Sbjct: 81 DKIPNHAIVNDAVTIAKNRGNKKGAEKFVNAILRQFT------DKPLPEISSIKRKNKR- 133
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
A YS P W+V++ G+ A+ +M S R+ + V + L Q+
Sbjct: 134 YAIQYSLPTWLVKKLYDQFGENRALAIM------ESLFKRSKASIRVVNSALFEQIKEDT 187
Query: 283 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
E SL + + +G + + K G +QDE++ LV ++ + + I+D C+
Sbjct: 188 GAQE-SLLAETALTKASG--HFAASDYFKNGNITIQDETSQLVAPTLEIKGDEKILDACS 244
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR----TFA 398
APGGKT++MAS L+ G + A+D+ +L ++ E A+ ++ I T D R FA
Sbjct: 245 APGGKTVHMASYLTS-GQITALDLYDHKLALVRENAERLNLSDKIETKVMDAREVHKEFA 303
Query: 399 DNSTVKCDKVLLDAPCSGLGVLSK 422
+S DK+L+DAPCSG+G++ +
Sbjct: 304 KDS---FDKILVDAPCSGIGLIRR 324
>gi|227544379|ref|ZP_03974428.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus reuteri
CF48-3A]
gi|338202534|ref|YP_004648679.1| RNA methyltransferase Sun [Lactobacillus reuteri SD2112]
gi|227185642|gb|EEI65713.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus reuteri
CF48-3A]
gi|336447774|gb|AEI56389.1| RNA methyltransferase Sun [Lactobacillus reuteri SD2112]
Length = 449
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 105/345 (30%), Positives = 172/345 (49%), Gaps = 41/345 (11%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D+D RL T+I+ G ++ + L++ + ++ ++P + +L Y+ L+
Sbjct: 41 LADKDRRLATNIIYGVLQHKLTLEYWLNGFVQGKR----LDPWVKTLLLSALYQYHYLER 96
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +AV DE++ +AK PG V G+L ++ LP L D R L+
Sbjct: 97 VPDWAVTDESIEIAKRRGNPGIRKFVTGVLHAIL------RKGLPDLRQIDERDLR-LSI 149
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL--VMQ-LNLLK 282
S P W+V T+ G+E+ K++ N +R N + + DL V Q L+
Sbjct: 150 ENSVPRWLVNELTREYGEEDTEKVLQSINEPAHQVIRVN----IVKTDLPTVKQTLDAAG 205
Query: 283 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
+ ++ S + + G +I + L K G +QDESA L V + +PG ++D CA
Sbjct: 206 IEYQESQVAQNALVITKG--EIISSDLFKNGEITIQDESAMLAVESMHIEPGDKVLDACA 263
Query: 343 APGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA-DLRT---- 396
APGGKT+ +A L+ + G V A+DI++ ++R++ + A+ V + T HA D R
Sbjct: 264 APGGKTVQIAEALTNEDGHVDALDIHQHKVRLIEKNARRLGVEKRV-TAHALDAREVDQL 322
Query: 397 FADNSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKT 441
F D S DKVL+DAPCSG+G+L + +RY KT
Sbjct: 323 FDDES---FDKVLVDAPCSGIGLLRRK----------PEIRYTKT 354
>gi|387142826|ref|YP_005731219.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus TW20]
gi|269940709|emb|CBI49090.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus TW20]
Length = 435
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 101/330 (30%), Positives = 168/330 (50%), Gaps = 48/330 (14%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNAMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQ 277
+ +A YS P W++ W + G EE ++ S ++RAN +TRA D++ +
Sbjct: 139 KRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTSTTVRAN----LTRASLDDIIEK 194
Query: 278 LNL----LKVPHELS--LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
L ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 390
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 247 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDAPDIHDHKIDLINFNIKKLRLTN--IKAF 304
Query: 391 HADLRTFADNSTVKCDKVLLDAPCSGLGVL 420
D D + DK+L+DAPCSGLGV+
Sbjct: 305 QHDATKPYDKT---YDKILVDAPCSGLGVM 331
>gi|302671346|ref|YP_003831306.1| rRNA small subunit methyltransferase B Sun [Butyrivibrio
proteoclasticus B316]
gi|302395819|gb|ADL34724.1| rRNA small subunit methyltransferase B Sun [Butyrivibrio
proteoclasticus B316]
Length = 450
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 92/328 (28%), Positives = 157/328 (47%), Gaps = 29/328 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD RD + + G + +D++I + + M+P + ++R+ Y+I+ +D
Sbjct: 36 LDTRDKSFIKRVTEGCLERNIQIDYIID--SYAKTPVRQMQPFIRALMRMSTYQIMFMDS 93
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A +E V+LA G VNG+LR + KD P K G L+
Sbjct: 94 VPDSAACNEAVKLAAKHKFAGLKGFVNGVLRNVSRGKDQIKYPDKKENGG----TDYLSV 149
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANS-----------RKGVTRADL 274
+YS P W+ W G ++ K++ + S ++R + + A
Sbjct: 150 MYSMPEWLCEMWIGEYGFDKTEKMLEFFLSPRPTTIRVTRNLPQSISVQELEQNLGEAGA 209
Query: 275 VMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 334
++ N L +P+ L L + I+ G KEG AVQD S+ LVV V DPQ
Sbjct: 210 TVRANSL-LPYALELEKTDNIKYLPGF---------KEGQFAVQDVSSMLVVEVADPQNK 259
Query: 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 394
Q ++D CAAPGGK+++ A + G VY+ D++ +++++ + A +N+V ++ D
Sbjct: 260 QVVIDVCAAPGGKSMHAAERVYPDGTVYSRDLSDKKIQLIEDNALRLGLNNVNIKVN-DA 318
Query: 395 RTFADNSTVKCDKVLLDAPCSGLGVLSK 422
+ + + D +LLD PCSGLG+L +
Sbjct: 319 KIHDEELKSQADILLLDVPCSGLGILGR 346
>gi|312127904|ref|YP_003992778.1| sun protein [Caldicellulosiruptor hydrothermalis 108]
gi|311777923|gb|ADQ07409.1| sun protein [Caldicellulosiruptor hydrothermalis 108]
Length = 410
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 91/324 (28%), Positives = 161/324 (49%), Gaps = 16/324 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F K +++D L ++V G +R++ +++ I + + +L ILR+ YE+
Sbjct: 8 FHQKLKNEKDRALFVELVHGVLRYKSLIEYYINFVAKK----GVKDKRILNILRVATYEL 63
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ L+ +P YA V+E +A + P VN ILR ++ K+ L +++ D
Sbjct: 64 LFLEKIPEYATVNEACEIAS-KISPHLKAFVNAILRNIIRNKNQIEESLERIKDVDYKSY 122
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
++ S+P +++ + G E+ +K++ + N+ P S++ N++K + L +L
Sbjct: 123 ISIKL--SYPRFLIDYLEESYGLEKTLKILEFLNTKPPQSIKINTKK-TDVSTLTQELEK 179
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAV--VDPQPGQSIV 338
+E++ H +E I V G N+ + L KEG QD ++ LVV D + + ++
Sbjct: 180 NGFKYEINSHNNEIIHVLKG--NIKETELYKEGYFYFQDLASSLVVKFNQEDFKRAKKVI 237
Query: 339 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398
D CAAPGGKT A + G V A DIN+ +L IL E +++I +D F
Sbjct: 238 DLCAAPGGKTFNCAEVID--GFVVACDINEHKLDILRENILRLGFDNII-VAKSDAEVFN 294
Query: 399 DNSTVKCDKVLLDAPCSGLGVLSK 422
+ K D V+ D PC+G G + K
Sbjct: 295 PDFAEKFDIVIADLPCTGFGAIRK 318
>gi|444917580|ref|ZP_21237675.1| Ribosomal RNA small subunit methyltransferase B [Cystobacter fuscus
DSM 2262]
gi|444710921|gb|ELW51882.1| Ribosomal RNA small subunit methyltransferase B [Cystobacter fuscus
DSM 2262]
Length = 439
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 110/323 (34%), Positives = 160/323 (49%), Gaps = 31/323 (9%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMP 167
D RD L+T++V GT R LD+ I ++ ++E +L LR+G Y++ +P
Sbjct: 36 DPRDAGLITELVYGTTRRELALDYAITRFA--DRKLDALEDKVLAALRVGVYQLFYTRVP 93
Query: 168 PYAVVDENVR-LAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI 226
A V E V+ L V L AG N ILRKL L + PLP +D A+ L+
Sbjct: 94 ARAAVAETVQALKDVGLARAAG-FANAILRKLAALP---AQPLPP--EDDLAEF--LSVR 145
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL---NLLKV 283
SHP W+V RW + G+E A ++V NN P+ +RAN R VTR L+ QL L
Sbjct: 146 ESHPRWLVERWLRQFGRERAEAMLVANNQTPAVVIRAN-RAKVTRDALLAQLRETGLEAR 204
Query: 284 PHELS---LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
P +S + L RV ++V EGL VQDE+A LV D ++D
Sbjct: 205 PTPVSPVGIILPPVGRV----EDVYG---YAEGLWQVQDEAAQLVGVYGDIPDTARVLDA 257
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLR-ILNETAKLHQVNSVIRTIHADLRTFAD 399
CAAPGGK + A +V A D++ ++R IL+E +L + +H + +
Sbjct: 258 CAAPGGKACHQAET----HVVVATDLHANKMRKILSEARRLGLTERLRAEVHDATEPWPE 313
Query: 400 NSTVKCDKVLLDAPCSGLGVLSK 422
+ + ++DAPCSGLG L +
Sbjct: 314 -AWGEFHAFVVDAPCSGLGTLRR 335
>gi|295407155|ref|ZP_06816956.1| LOW QUALITY PROTEIN: ribosomal RNA small subunit methyltransferase
B [Staphylococcus aureus A8819]
gi|294968008|gb|EFG44036.1| LOW QUALITY PROTEIN: ribosomal RNA small subunit methyltransferase
B [Staphylococcus aureus A8819]
Length = 428
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 101/330 (30%), Positives = 168/330 (50%), Gaps = 48/330 (14%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNAMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQ 277
+ +A YS P W++ W + G EE ++ S ++RAN +TRA D++ +
Sbjct: 139 KRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTSTTVRAN----LTRASLDDIIEK 194
Query: 278 LNL----LKVPHELS--LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
L ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 390
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 247 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAF 304
Query: 391 HADLRTFADNSTVKCDKVLLDAPCSGLGVL 420
D D + DK+L+DAPCSGLGV+
Sbjct: 305 QHDATKPYDKT---YDKILVDAPCSGLGVM 331
>gi|336395246|ref|ZP_08576645.1| 16S rRNA methyltransferase B [Lactobacillus farciminis KCTC 3681]
Length = 440
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 98/338 (28%), Positives = 162/338 (47%), Gaps = 49/338 (14%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQIL------- 154
+ D+ D D RL+T+IV G I+ + L++ +EP L
Sbjct: 31 LKNSDMSDADKRLMTNIVYGVIQHKYVLEY-------------QLEPYLKDKKLDLWLDL 77
Query: 155 --RIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPK 211
+ Y++ LD +P +AV++E+ +AK GAGNLVN +LR +
Sbjct: 78 LLQTAIYQLSYLDKIPEHAVLNESTEIAKQKANRGAGNLVNAVLRNF------QRHGARE 131
Query: 212 LEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR 271
+ G D L+ YS P W+V+ + G ++ +++ N S+R N+ K T
Sbjct: 132 MSGKD--SVYDLSKFYSVPRWLVQLFIDQQGLDKTKEILKSINQPSHVSIRVNTNK-TTV 188
Query: 272 ADL--VMQLNLLKV-PHELSLHLDEFIRVKTGL----QNVIQAGLLKEGLCAVQDESAGL 324
DL +Q V P ++S GL N++ ++GL +QDES+ L
Sbjct: 189 KDLQKTLQSKGFDVKPSKIS---------SVGLICESGNLVNTDEFRDGLYTIQDESSML 239
Query: 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 384
V +D P ++D CAAPGGKT ++AS + G V A+DI+K + +++ + ++ +
Sbjct: 240 VAPALDLLPDSRVLDACAAPGGKTTHIASYIK-DGEVTALDIHKHKTKLIRDNSQRMGYS 298
Query: 385 SVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
+I T D R D D++L+DAPCSGLG++ +
Sbjct: 299 DIISTGAIDARKAKDVLNTTFDRILVDAPCSGLGLIRR 336
>gi|407717363|ref|YP_006838643.1| ribosomal RNA small subunit methyltransferase B [Cycloclasticus sp.
P1]
gi|407257699|gb|AFT68140.1| Ribosomal RNA small subunit methyltransferase B [Cycloclasticus sp.
P1]
Length = 438
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 97/325 (29%), Positives = 170/325 (52%), Gaps = 28/325 (8%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
+++L+ R+ ++ GT+RW LD ++ LL +K F + + + + IG Y+I+
Sbjct: 36 SENLEPREKAFCRELCYGTLRWHSRLDAILHLLL--KKPFKAKDLDITVLALIGLYQIIY 93
Query: 164 LDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
L P +A V E V K + A ++NG+LR L++ SL + +++ R
Sbjct: 94 LSTPDHAAVSETVSQCKRGKKSWANGVLNGVLRNF--LRNRESL---EKTVDEQPNQR-- 146
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
+SHP W+V+ +K GQ+ K++ NN P S+R N +K VTR + QL+
Sbjct: 147 ---FSHPDWLVKEISKSWGQQTK-KILAANNQYPPMSIRVN-QKIVTRDHYLQQLS---- 197
Query: 284 PHELSLHL--DEFIRVKTGLQ---NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 338
+ ++H + F V L+ NV Q +G +VQD +A L ++D + GQ I+
Sbjct: 198 --DNAIHATKNPFNTVGLTLEKPVNVDQLPDFWQGASSVQDGAAQLAAELLDIKGGQRIL 255
Query: 339 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA-DLRTF 397
D CAAPGGK ++ +G + A+DI++ R + + E + ++N+ + T+ A + +
Sbjct: 256 DVCAAPGGKAAHILEQAAGTVSLLALDIDEKRNQRVLENLQRLKLNAEVMTVDALEADEW 315
Query: 398 ADNSTVKCDKVLLDAPCSGLGVLSK 422
D + ++LLDAPCS GV+ +
Sbjct: 316 FDEKPFQ--RILLDAPCSATGVIRR 338
>gi|418561429|ref|ZP_13125920.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21262]
gi|371977640|gb|EHO94904.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21262]
Length = 435
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 100/330 (30%), Positives = 168/330 (50%), Gaps = 48/330 (14%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNAMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQ 277
+ +A YS P W++ W + G EE ++ + ++RAN +TRA D++ +
Sbjct: 139 KRMAIEYSMPKWIIDHWATHFGLEETETILQSFLETTTTTVRAN----LTRASLDDIIEK 194
Query: 278 LNL----LKVPHELS--LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
L ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 390
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 247 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAF 304
Query: 391 HADLRTFADNSTVKCDKVLLDAPCSGLGVL 420
D D + DK+L+DAPCSGLGV+
Sbjct: 305 QHDATKPYDKT---YDKILVDAPCSGLGVM 331
>gi|418914315|ref|ZP_13468287.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIGC340D]
gi|377757817|gb|EHT81705.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIGC340D]
Length = 435
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 97/329 (29%), Positives = 168/329 (51%), Gaps = 46/329 (13%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNAMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQ 277
+ +A YS P W++ W + G EE ++ S ++RAN +TRA D++ +
Sbjct: 139 KRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTSTTVRAN----LTRASLDDIIEK 194
Query: 278 LNL----LKVPHELS--LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
L ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
++D C+APGGK ++A L +G V A DI+ ++ ++N K ++ ++ H
Sbjct: 247 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTNIEAFQH 306
Query: 392 ADLRTFADNSTVKCDKVLLDAPCSGLGVL 420
+ + DK+L+DAPCSGLGV+
Sbjct: 307 DATKPYDKT----YDKILVDAPCSGLGVM 331
>gi|228916502|ref|ZP_04080068.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228928913|ref|ZP_04091945.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228935179|ref|ZP_04098006.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228947584|ref|ZP_04109874.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|229123379|ref|ZP_04252583.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus 95/8201]
gi|229186105|ref|ZP_04313274.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus BGSC
6E1]
gi|228597281|gb|EEK54932.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus BGSC
6E1]
gi|228660155|gb|EEL15791.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus 95/8201]
gi|228812104|gb|EEM58435.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228824544|gb|EEM70349.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228830720|gb|EEM76325.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228843081|gb|EEM88163.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
Length = 360
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 135/258 (52%), Gaps = 12/258 (4%)
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+AT
Sbjct: 7 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT 61
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHPVW+V+ WT G E A K+ N P + R N K +T + + L +
Sbjct: 62 --SHPVWLVQEWTAEYGLETAEKMCEVNMLPPVPTARVNVDK-ITVEEAITLLASEGIEA 118
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ D+ I+++ G NV K+G ++QDES+ LV ++P G I+D CAAPG
Sbjct: 119 KRGDLSDDAIQIEKG--NVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVILDSCAAPG 176
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404
GKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 177 GKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFANET 235
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 236 FDKILVDAPCSGFGVIRR 253
>gi|271502215|ref|YP_003335241.1| sun protein [Dickeya dadantii Ech586]
gi|270345770|gb|ACZ78535.1| sun protein [Dickeya dadantii Ech586]
Length = 431
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 103/322 (31%), Positives = 158/322 (49%), Gaps = 26/322 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+D+ +RD L+ +I G +R LD + L K + + +L +L +G Y+++
Sbjct: 34 RDISERDRGLLQEICFGVLRVLPQLDWYLRQLM--AKPLTGKQKVLHYLLMVGLYQLIHT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ ++ +L +L+ N AR
Sbjct: 92 RIPPHAALAETVNGAVALKRPQLKGLINGVLRQFQ--REQEAL-QQRLQNNP---AR--- 142
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM--QLNLL 281
YSHP W+++R K Y GQ E I + NN P LR N R A L + + +
Sbjct: 143 --YSHPDWLLQRLKKAYPGQWEQI--IDANNQHPPMWLRVNRRHHTREAYLALLQEKGIE 198
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
PH H + IR+ T + G K G VQD SA + + PQ + I+D C
Sbjct: 199 AHPHA---HYPDAIRLSTPCAVNVLPGFEK-GFVTVQDASAQGCIHWLSPQDHEDILDLC 254
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401
AAPGGKT ++ + V A+D+++ RL+ + E L ++N D RT
Sbjct: 255 AAPGGKTTHILEA-APHARVLAVDVDEQRLKRVREN--LQRLNLHAEVKCGDGRTPTQWC 311
Query: 402 TVKC-DKVLLDAPCSGLGVLSK 422
KC D++LLDAPCS GV+ +
Sbjct: 312 GDKCFDRILLDAPCSATGVIRR 333
>gi|49483380|ref|YP_040604.1| hypothetical protein SAR1193 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|295427702|ref|ZP_06820334.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus EMRSA16]
gi|49241509|emb|CAG40195.1| hypothetical protein SAR1193 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|295128060|gb|EFG57694.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus EMRSA16]
Length = 435
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 101/330 (30%), Positives = 168/330 (50%), Gaps = 48/330 (14%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNVMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQ 277
+ +A YS P W++ W + G EE ++ S ++RAN +TRA D++ +
Sbjct: 139 KRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTSTTVRAN----MTRASLDDIIEK 194
Query: 278 LNL----LKVPHELS--LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
L ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 390
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 247 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAF 304
Query: 391 HADLRTFADNSTVKCDKVLLDAPCSGLGVL 420
D D + DK+L+DAPCSGLGV+
Sbjct: 305 QHDATKPYDKT---YDKILVDAPCSGLGVM 331
>gi|418576403|ref|ZP_13140549.1| putative tRNA and rRNA cytosine-C5-methylase [Staphylococcus
saprophyticus subsp. saprophyticus KACC 16562]
gi|379325465|gb|EHY92597.1| putative tRNA and rRNA cytosine-C5-methylase [Staphylococcus
saprophyticus subsp. saprophyticus KACC 16562]
Length = 437
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 171/321 (53%), Gaps = 30/321 (9%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L+ D L T++V GT++ + LD+L+ + ++ + Q+L + Y+ V LD
Sbjct: 37 ELNRADKGLYTELVYGTLKRKYTLDYLLKPFVQ-----TKLKGWVRQLLWMSIYQYVYLD 91
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A+++E V +AK P GN+VNGILR ++ + LP +D+ + +A
Sbjct: 92 KIPEHAIINEAVEIAKYKGGPHNGNVVNGILRNIM----RSDLPDFTEITDDK---KRIA 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
YS P W+V WT + G E+ + + ++R N + ++ D + +L
Sbjct: 145 IEYSLPKWLVDHWTTHFGIEKTETIAQSFLDKVTTTVRVNLTR-ISVDDAIRRLTDDDYI 203
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
E ++ + + + +I++ + K+GL ++QD+S+ + ++ + G ++D C+AP
Sbjct: 204 VEQDREIETCLHISG--KPIIESRMFKDGLISIQDKSSMFIGELMALKEGDQVLDACSAP 261
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH-ADLRTFADNSTV 403
GGK ++A L+G G V A DI++ ++ +++ IR + +++ F ++T
Sbjct: 262 GGKACHIAEILNGTGHVDATDIHEHKIDLIDFN---------IRKLRLSNISAFEHDATE 312
Query: 404 KCDKV----LLDAPCSGLGVL 420
K DKV L+DAPCSGLGVL
Sbjct: 313 KYDKVYDKILVDAPCSGLGVL 333
>gi|268319212|ref|YP_003292868.1| rRNA methylase [Lactobacillus johnsonii FI9785]
gi|262397587|emb|CAX66601.1| rRNA methylase [Lactobacillus johnsonii FI9785]
Length = 440
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 102/326 (31%), Positives = 165/326 (50%), Gaps = 34/326 (10%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
DL D L T IV GTI+++ +L++ + L + S ++PLLL + Y+ L+
Sbjct: 34 DLKLADKALATRIVYGTIQYKIFLEYQLKPLIKTKLRDSFLKPLLL----MSAYQYFFLE 89
Query: 166 -MPPYAVVDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
+P A+ DE +LAK + +G+ LVNGILR L + LP ND +
Sbjct: 90 KVPANAIFDEANKLAKKYSKRNSGSYKLVNGILR--ALERQGKILP----PTNDLVEY-- 141
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR-------KGVTRADLV 275
L+ S P W+V + G+ E +++V +N + S+R ++ K + D
Sbjct: 142 LSIKESFPKWLVEYLLDHFGENETKEILVRSNQPAANSIRMTTKESDFEEIKEELKKDTF 201
Query: 276 MQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
PH L+L+ K G V Q L K G +QD +A L V D + +
Sbjct: 202 SFEESSLTPHNLNLN-------KGG---VAQTALFKNGKITIQDAAASLAVDAFDFKGSE 251
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
++D C+APGGKT+ +A L+ G V A+DI++ +LR++ A+ V+ ++T D R
Sbjct: 252 QVLDACSAPGGKTVQIAENLT-TGSVIALDIHENKLRLVRNAAERLHVSDKVKTKALDAR 310
Query: 396 TFADN-STVKCDKVLLDAPCSGLGVL 420
+ + + DK+L+DAPCSGLG++
Sbjct: 311 KAKEYFNQGQFDKILVDAPCSGLGLI 336
>gi|403046860|ref|ZP_10902329.1| tRNA and rRNA cytosine-C5-methylase [Staphylococcus sp. OJ82]
gi|402763556|gb|EJX17649.1| tRNA and rRNA cytosine-C5-methylase [Staphylococcus sp. OJ82]
Length = 437
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 89/320 (27%), Positives = 171/320 (53%), Gaps = 28/320 (8%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L+ D L T++V GT++ + LD+L+ + ++ + Q+L + Y+ V LD
Sbjct: 37 ELNRADKGLFTELVYGTLKRKFSLDYLLKPFVQ-----TKLKGWVRQLLWMSIYQYVYLD 91
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A+++E V +AK P GN+VNGILR ++ + LP +D+ + +A
Sbjct: 92 KVPEHAIINEAVEIAKRKGGPHNGNVVNGILRNIM----RSDLPDFTEITDDK---KRIA 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
YS P W+V W+ + G E+ + + + ++R N + ++ D++ +L
Sbjct: 145 IEYSLPKWLVDHWSTHFGIEKTEAIAESFLTKVATTVRVNLTR-ISIEDVIRRLVEDDYI 203
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
E +D + + + +I++ + K+GL ++QD+S+ V ++ G ++D C+AP
Sbjct: 204 VEQDNEIDTCLHISG--KPIIESRMFKDGLVSIQDKSSMFVAELMGLNEGDEVLDACSAP 261
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404
GGK ++A L+G G + A DI + ++ +++ K ++ +++ F ++T K
Sbjct: 262 GGKACHIAEVLNGTGHIDATDIYEHKIDLIDFNIKKLRL--------SNISAFEHDATEK 313
Query: 405 ----CDKVLLDAPCSGLGVL 420
DK+L+DAPCSGLGVL
Sbjct: 314 YGKVYDKILVDAPCSGLGVL 333
>gi|73662864|ref|YP_301645.1| tRNA and rRNA cytosine-C5-methylase [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
gi|72495379|dbj|BAE18700.1| putative tRNA and rRNA cytosine-C5-methylase [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
Length = 436
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 92/332 (27%), Positives = 176/332 (53%), Gaps = 53/332 (15%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L+ D L T++V GT++ + LD+L+ + ++ + Q+L + Y+ V LD
Sbjct: 37 ELNRADKGLYTELVYGTLKRKYTLDYLLKPFVQ-----TKLKGWVRQLLWMSIYQYVYLD 91
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A+++E V +AK P GN+VNGILR ++ + LP +D+ + +A
Sbjct: 92 KIPEHAIINEAVEIAKYKGGPHNGNVVNGILRNIM----RSDLPDFTEITDDK---KRIA 144
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
YS P W+V WT + G E+ + ++ + + +++NL ++
Sbjct: 145 IEYSLPKWLVDHWTTHFGIEKTETI---------------AQSFLDKVTTTVRVNLTRIS 189
Query: 285 HELSLH--LDEFI-----RVKTGL----QNVIQAGLLKEGLCAVQDESAGLVVAVVDPQP 333
+ ++ D++I ++T L + +I++ + K+GL ++QD+S+ + ++ +
Sbjct: 190 VDDAIRRLTDDYIVEQDREIETCLHISGKPIIESRMFKDGLISIQDKSSMFIGELMALKE 249
Query: 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH-A 392
G ++D C+APGGK ++A L+G G V A DI++ ++ +++ IR + +
Sbjct: 250 GDQVLDACSAPGGKACHIAEILNGTGHVDATDIHEHKIDLIDFN---------IRKLRLS 300
Query: 393 DLRTFADNSTVKCDKV----LLDAPCSGLGVL 420
++ F ++T K DKV L+DAPCSGLGVL
Sbjct: 301 NISAFEHDATEKYDKVYDKILVDAPCSGLGVL 332
>gi|344204967|ref|YP_004790109.1| putative rRNA small subunit methyltransferase B [Mycoplasma
putrefaciens KS1]
gi|343956890|gb|AEM68605.1| putative rRNA small subunit methyltransferase B [Mycoplasma
putrefaciens KS1]
Length = 419
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 93/327 (28%), Positives = 174/327 (53%), Gaps = 41/327 (12%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L ++D L+ ++V GTI + YL++LI L + +KT ++ LL + Y+++ LD
Sbjct: 34 LSNQDKDLIFNLVHGTIANKIYLEYLINQLINYKKTQKELQILLW----LAIYQLIFLDA 89
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P YAVV ++V LAK +G VN IL+K + NN K++ ++ +
Sbjct: 90 IPDYAVVSQSVELAKTISLKASG-FVNAILKKFI----NNLKSYTKIKLANQELELCIKH 144
Query: 226 IYSHPVWMV--RRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
+S+ ++++ +++ K + + K+++ N+ P R NS K +
Sbjct: 145 SFSYSLYLMLKQQYDKKILE----KIVIDNHQIPLIYFRVNSLK-------------ISA 187
Query: 284 PHELSLHLDEFIRVKTGLQN-------VIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 336
+ + DEF+ KT L++ ++ + L + GL +QD+++ LV V++P +
Sbjct: 188 NQFFAKYKDEFLLEKTNLKDCFIANKAIVNSSLYQNGLITIQDKASILVSQVLNPSLNAN 247
Query: 337 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET-AKLHQVNSVIRTIHADLR 395
++D CAAPG KT ++++ ++ G++ A +I+K +L ++ E ++L N I+ + D R
Sbjct: 248 VLDMCAAPGSKTTHLSAIMNNTGMILANEISKNKLGLIAENISRLGCQN--IKLANLDAR 305
Query: 396 TFADNSTVKCDKVLLDAPCSGLGVLSK 422
+ T D +LLDAPCSG GVL +
Sbjct: 306 QI--DRTNYFDFILLDAPCSGFGVLKR 330
>gi|257425270|ref|ZP_05601695.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 55/2053]
gi|257427930|ref|ZP_05604328.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 65-1322]
gi|257430563|ref|ZP_05606945.1| RNA-binding Sun protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257433324|ref|ZP_05609682.1| RNA-binding Sun protein [Staphylococcus aureus subsp. aureus E1410]
gi|257436166|ref|ZP_05612213.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus M876]
gi|282903770|ref|ZP_06311658.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus C160]
gi|282905534|ref|ZP_06313389.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus Btn1260]
gi|282908510|ref|ZP_06316340.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus WW2703/97]
gi|282913992|ref|ZP_06321779.1| sun protein [Staphylococcus aureus subsp. aureus M899]
gi|282918914|ref|ZP_06326649.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus C427]
gi|282924037|ref|ZP_06331713.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus C101]
gi|283957958|ref|ZP_06375409.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus A017934/97]
gi|293501025|ref|ZP_06666876.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 58-424]
gi|293509984|ref|ZP_06668692.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus M809]
gi|293526572|ref|ZP_06671257.1| sun protein [Staphylococcus aureus subsp. aureus M1015]
gi|297591339|ref|ZP_06949977.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus MN8]
gi|415683805|ref|ZP_11449007.1| hypothetical protein CGSSa00_05338 [Staphylococcus aureus subsp.
aureus CGS00]
gi|417887102|ref|ZP_12531241.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21195]
gi|418566587|ref|ZP_13130960.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21264]
gi|418582051|ref|ZP_13146129.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1605]
gi|418597658|ref|ZP_13161180.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21342]
gi|418603159|ref|ZP_13166550.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21345]
gi|418891850|ref|ZP_13445965.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1176]
gi|418897754|ref|ZP_13451824.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIGC341D]
gi|418900624|ref|ZP_13454681.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1214]
gi|418908928|ref|ZP_13462931.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG149]
gi|418917012|ref|ZP_13470971.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1267]
gi|418922799|ref|ZP_13476716.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1233]
gi|418982130|ref|ZP_13529838.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1242]
gi|418985797|ref|ZP_13533483.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1500]
gi|257271727|gb|EEV03865.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 55/2053]
gi|257274771|gb|EEV06258.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 65-1322]
gi|257278691|gb|EEV09310.1| RNA-binding Sun protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257281417|gb|EEV11554.1| RNA-binding Sun protein [Staphylococcus aureus subsp. aureus E1410]
gi|257284448|gb|EEV14568.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus M876]
gi|282314009|gb|EFB44401.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus C101]
gi|282316724|gb|EFB47098.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus C427]
gi|282322060|gb|EFB52384.1| sun protein [Staphylococcus aureus subsp. aureus M899]
gi|282327572|gb|EFB57855.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus WW2703/97]
gi|282330826|gb|EFB60340.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus Btn1260]
gi|282595388|gb|EFC00352.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus C160]
gi|283790107|gb|EFC28924.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus A017934/97]
gi|290920644|gb|EFD97707.1| sun protein [Staphylococcus aureus subsp. aureus M1015]
gi|291096030|gb|EFE26291.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 58-424]
gi|291466928|gb|EFF09446.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus M809]
gi|297576225|gb|EFH94941.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus MN8]
gi|315194103|gb|EFU24496.1| hypothetical protein CGSSa00_05338 [Staphylococcus aureus subsp.
aureus CGS00]
gi|341858524|gb|EGS99314.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21195]
gi|371969857|gb|EHO87295.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21264]
gi|374393720|gb|EHQ65024.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21342]
gi|374393888|gb|EHQ65191.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21345]
gi|377703092|gb|EHT27408.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1214]
gi|377704411|gb|EHT28720.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1242]
gi|377705615|gb|EHT29919.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1500]
gi|377710461|gb|EHT34699.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1605]
gi|377731182|gb|EHT55239.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1176]
gi|377736122|gb|EHT60152.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1233]
gi|377750186|gb|EHT74124.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1267]
gi|377753966|gb|EHT77876.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG149]
gi|377760789|gb|EHT84665.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIGC341D]
Length = 435
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 101/330 (30%), Positives = 168/330 (50%), Gaps = 48/330 (14%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNVMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQ 277
+ +A YS P W++ W + G EE ++ S ++RAN +TRA D++ +
Sbjct: 139 KRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTSTTVRAN----LTRASLDDIIEK 194
Query: 278 LNL----LKVPHELS--LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
L ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 390
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 247 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAF 304
Query: 391 HADLRTFADNSTVKCDKVLLDAPCSGLGVL 420
D D + DK+L+DAPCSGLGV+
Sbjct: 305 QHDATKPYDKT---YDKILVDAPCSGLGVM 331
>gi|418280903|ref|ZP_12893725.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21178]
gi|365167004|gb|EHM58481.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21178]
Length = 435
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/330 (30%), Positives = 167/330 (50%), Gaps = 48/330 (14%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNAMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQ 277
+ +A YS P W++ W + G EE ++ S ++RAN +TRA D++ +
Sbjct: 139 KRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTSTTVRAN----LTRASLDDIIEK 194
Query: 278 LNL----LKVPHELS--LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
L ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 390
++D C+APGGK ++A +G V A DI+ ++ ++N KL N I+
Sbjct: 247 DRHDHVLDACSAPGGKACHIAEVFMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAF 304
Query: 391 HADLRTFADNSTVKCDKVLLDAPCSGLGVL 420
D D + DK+L+DAPCSGLGV+
Sbjct: 305 QHDATKPYDKT---YDKILVDAPCSGLGVM 331
>gi|291527116|emb|CBK92702.1| ribosomal RNA small subunit methyltransferase RsmB [Eubacterium
rectale M104/1]
Length = 469
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/319 (29%), Positives = 152/319 (47%), Gaps = 23/319 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L +D +T +V GTI + LD++I + M+P + +LR+ Y+I +D
Sbjct: 73 LSKQDRAFMTRLVDGTIEYMLQLDYIIDSFS--KTKVRKMKPFIRNLLRMSVYQIKYMDA 130
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P AV +E V+LAK VNG+LR + D Q L+
Sbjct: 131 VPDSAVCNEAVKLAKRHKFAQLSGFVNGVLRNIA-------------RNIDSVQFDTLSI 177
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
YS P W+V R+ G+++A ++ +S + S+R N +TR +L+
Sbjct: 178 RYSMPQWIVDRFVAEYGEKKAEEIFKAFHSKSTISIRTN----LTRCTPDELRAMLEAEG 233
Query: 286 ELSLHLDE--FIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
+ +DE + V +G + ++GL VQD S+ LV P+ G ++D CAA
Sbjct: 234 VIVTPVDELNYAFVISGFDYLNGLQSFRDGLFYVQDISSMLVAQTAAPKKGDYVIDVCAA 293
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403
PGGK+ ++A L G G V A D+ ++ ++ E H +N++ + AD S
Sbjct: 294 PGGKSTHIAELLKGSGHVLARDLTDTKVGMIEENIDRHGLNNMSAEVWDATVPDAD-SAE 352
Query: 404 KCDKVLLDAPCSGLGVLSK 422
K D ++ D PCSGLGVL +
Sbjct: 353 KADILICDLPCSGLGVLGR 371
>gi|187735067|ref|YP_001877179.1| sun protein [Akkermansia muciniphila ATCC BAA-835]
gi|187425119|gb|ACD04398.1| sun protein [Akkermansia muciniphila ATCC BAA-835]
Length = 412
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 102/322 (31%), Positives = 153/322 (47%), Gaps = 43/322 (13%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDM 166
L D LV +V +R + +LDH+I L K +E L IL++G ++ L M
Sbjct: 39 LPSADRHLVQALVFSVLRNQTWLDHVIGTL---RKGRLDVEARL--ILQLGLSQLFLLGM 93
Query: 167 PPYAVVDENVRLAKVALRPGAGNLVNGILRKLV-----LLKDNNSLPLPKLEGNDRAQAR 221
+A V E V LA V LR LVN ILR + +L++ LPL
Sbjct: 94 ADHAAVYETVNLASVRLR----GLVNAILRNALRREKTILEEREKLPL------------ 137
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
+ YS P W+VRRWT+ +G + A L+ WNN+ P +RAN + +
Sbjct: 138 --SIHYSTPAWLVRRWTEQMGPQMARDLLRWNNTTPRLYVRANP-----------LMPMK 184
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
+P L+ LD + ++ ++ +K G V D S + ++ PQPG+ I+D C
Sbjct: 185 NIPASLA-PLDRAPGWFS-VEGLLPLEEIKTGSLYVADPSTRYSIDLLAPQPGEEILDAC 242
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401
AAPGGK+ + + G+ + A D+++ RL L E Q +S +RT AD
Sbjct: 243 AAPGGKSAAIIAATGGKAHLTATDLHEHRLPTLKENLD-RQGSSFVRTAQADWSLPCRTE 301
Query: 402 -TVKCDKVLLDAPCSGLGVLSK 422
+ D VLLD PCS GV+ +
Sbjct: 302 WKGRFDAVLLDVPCSNTGVIQR 323
>gi|229918581|ref|YP_002887227.1| sun protein [Exiguobacterium sp. AT1b]
gi|229470010|gb|ACQ71782.1| sun protein [Exiguobacterium sp. AT1b]
Length = 443
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 104/360 (28%), Positives = 180/360 (50%), Gaps = 39/360 (10%)
Query: 68 LMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRR 127
LM+I+ GGA++ + V TL + K + +D+ L T++V GT+ +
Sbjct: 11 LMKIEQGGAYSTI--------------AVNDTL--KQKKVAPKDVGLYTELVYGTLSRKG 54
Query: 128 YLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKV-ALRP 185
LD+++ K ++ +L +LR+ Y++ LD +P AV+ E V +AK
Sbjct: 55 TLDYILKDRIRSPK---KLDKFVLPLLRMSVYQLFYLDKVPDRAVLHEAVEIAKKRGHHL 111
Query: 186 GAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQ 243
G VNG+LR ++ D +SL A +A +SHP W+V W + G
Sbjct: 112 GTSKFVNGVLRNVLREGFPDFSSL----------TDAERIAIEHSHPEWLVSDWIELYGV 161
Query: 244 EEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQN 303
E A + NN ++R N RK ++ +++ +L V S + + V++G N
Sbjct: 162 ETAEAICRLNNEPAPVTIRVN-RKRISVDEMMNRLADAGVMTSRSELSADGLVVESG--N 218
Query: 304 VIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYA 363
V ++EGL ++QDES+ +V + I+D CAAPGGK ++ A + G G + A
Sbjct: 219 VHATPFIEEGLLSIQDESSMIVADALGVSKDDVILDACAAPGGKAMHTAERMQG-GSLTA 277
Query: 364 IDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAPCSGLGVLSK 422
+D++ + +++++ AK +N V + D R + + D++LLD PCSGLGV+ +
Sbjct: 278 LDLHPHKAKLIDQQAKRLHINGVT-ALALDARLAGERFEEESFDRILLDVPCSGLGVIRR 336
>gi|257066168|ref|YP_003152424.1| Fmu (Sun) domain-containing protein [Anaerococcus prevotii DSM
20548]
gi|256798048|gb|ACV28703.1| Fmu (Sun) domain protein [Anaerococcus prevotii DSM 20548]
Length = 430
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 99/336 (29%), Positives = 161/336 (47%), Gaps = 25/336 (7%)
Query: 89 GDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEP 148
+ E+ Y+E+ +G +L T ++ G + + Y+D++I L +
Sbjct: 21 SNEEINYLEKRVG---------NLPYATKVIYGVLENKIYIDYMIGKLSK--IKLKKIHK 69
Query: 149 LLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLP 208
+L IL IG Y I L+ YA VD+ V L K R +G VN ILR + +D +
Sbjct: 70 NVLTILEIGIYNIHFLETKDYATVDKLVELTKRKNRRSSG-FVNAILRNFI--RDEKEIA 126
Query: 209 LPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKG 268
K+ + ++L+ YS P + R G + + ++N++ S+R N R
Sbjct: 127 KIKISDD----IKSLSVRYSMPEEITRYIFDNYGMDYTKDFLRYSNNEAVLSIRIN-RLK 181
Query: 269 VTRADLVMQLNLLKVPHELSLHLDEFIRVK--TGLQNVIQAGLLKEGLCAVQDESAGLVV 326
+ +L+ +L E+S + + VK +GL + KEGL +Q E++ V
Sbjct: 182 TDKDNLIKKLKAKGFEIEVSKISENALLVKNPSGL---VATSEFKEGLFTIQQEASMKTV 238
Query: 327 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV 386
V+DPQ I+D CAAPG KT Y+A G + A DI+K +L ++ E + + S
Sbjct: 239 EVLDPQKDSKILDLCAAPGTKTSYLAEYTRNSGKIIANDISKNKLNLIRENIERLGL-SN 297
Query: 387 IRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
I D + + K D VL+DAPCSGLGV+++
Sbjct: 298 IELDSFDASVYRSDFEEKFDYVLVDAPCSGLGVMAR 333
>gi|375088919|ref|ZP_09735256.1| ribosomal RNA small subunit methyltransferase B [Dolosigranulum
pigrum ATCC 51524]
gi|374561086|gb|EHR32435.1| ribosomal RNA small subunit methyltransferase B [Dolosigranulum
pigrum ATCC 51524]
Length = 446
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/365 (27%), Positives = 181/365 (49%), Gaps = 45/365 (12%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+DL ++ L+T++V G ++ +R +D+ + K ++ + Q+LR+ Y++V L
Sbjct: 35 EDLSPQERALLTELVYGVMQNKRLIDYYLSKFL---KPSQKLDGWVRQLLRVAVYQLVFL 91
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
D +P YA ++E V+ AK G LVNG+LR + + PL L+ ++ +
Sbjct: 92 DQIPTYAAINEAVQYAKRRGHRGISGLVNGVLRNI------DRHPLKSLD-EITSKIERI 144
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
T YS P W+V++ G+E + N S+R N+ + ++R +++ QL +
Sbjct: 145 GTQYSLPDWLVKQLVADYGEETTEAIAQSFNKRAHVSVRVNTNQ-LSRDEVLEQLQVAGF 203
Query: 284 P---HELSLHLDEFIRVKTGLQNVIQAGL------LKEGLCAVQDESAGLVVAVVDPQPG 334
ELS GL +IQ GL ++G +QDE+A LV ++ P
Sbjct: 204 EVTRSELS---------PVGL--IIQGGLPTDTELFQQGAITIQDEAAMLVAPALEVTPS 252
Query: 335 QSIVDCCAAPGGKTLYMASCL--SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 392
+ D CAAPGGK+ ++A+ L + G + + DI+ +L ++ + + + R
Sbjct: 253 DYVWDACAAPGGKSAHIATYLDNASGGQLLSTDIHPHKLSLIQASLDRQKQDDKSRVEQL 312
Query: 393 DLR-TFADNSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCET 451
D R A + + DK+L+DAPCSG+G+L R +R+ K+++ Q L ++
Sbjct: 313 DAREVVAQYGSEQFDKILVDAPCSGVGLL----------RRKPDIRFQKSAYTSQALAQS 362
Query: 452 KYLLL 456
+ +L
Sbjct: 363 QSEIL 367
>gi|417655578|ref|ZP_12305288.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21193]
gi|417797205|ref|ZP_12444403.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21305]
gi|329728796|gb|EGG65217.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21193]
gi|334267253|gb|EGL85717.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21305]
Length = 435
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/330 (30%), Positives = 167/330 (50%), Gaps = 48/330 (14%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNAMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNG LR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGFLRTMMRSDLPDFNEIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQ 277
+ +A YS P W++ W + G EE ++ S ++RAN +TRA D++ +
Sbjct: 139 KRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTSTTVRAN----LTRASLDDIIEK 194
Query: 278 LNL----LKVPHELS--LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
L ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 390
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 247 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAF 304
Query: 391 HADLRTFADNSTVKCDKVLLDAPCSGLGVL 420
D D + DK+L+DAPCSGLGV+
Sbjct: 305 QHDATKPYDKT---YDKILVDAPCSGLGVM 331
>gi|228987008|ref|ZP_04147134.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229157441|ref|ZP_04285519.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus ATCC
4342]
gi|228626168|gb|EEK82917.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus ATCC
4342]
gi|228772786|gb|EEM21226.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 360
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 136/259 (52%), Gaps = 14/259 (5%)
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL-EGNDRAQARALA 224
+P A + E V +AK G +VNG+LR + +P + E D + A+A
Sbjct: 7 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI------QREGVPSVDEIKDPVERLAIA 60
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
T SHP+W+V+ WT G E A K+ N P + R N K +T + + L +
Sbjct: 61 T--SHPIWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDK-ITVEEAIALLASEGIE 117
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
+ D+ I+++ G NV K+G ++QDES+ LV ++P G ++D CAAP
Sbjct: 118 AKRGDLSDDAIQIEKG--NVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVVLDSCAAP 175
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STV 403
GGKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 176 GGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLENV-ETKALDARKVQEHFANE 234
Query: 404 KCDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 235 TFDKILVDAPCSGFGVIRR 253
>gi|291543913|emb|CBL17022.1| ribosomal RNA small subunit methyltransferase RsmB [Ruminococcus
champanellensis 18P13]
Length = 434
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 166/344 (48%), Gaps = 22/344 (6%)
Query: 80 LLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHD 139
LL+K G + + ++R L R DL+ + V+ + G I LD+++ +
Sbjct: 11 LLDKTFGAQGYSNIA-LDRAL--RDSDLNPQQKSRVSALYYGVIERLPELDYVLSR--YS 65
Query: 140 EKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLV 199
+K ++P + +LR G Y++ + +P A V+E V K A VN +LR V
Sbjct: 66 KKPPEKLDPTVRNLLRCGVYQLAHMRIPDNAAVNECVNACKKLRYTSASGFVNAVLRGFV 125
Query: 200 LLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSF 259
+D +P+PK D A R + Y P W++++ + G+ L+ P
Sbjct: 126 --RDGKQIPVPK----DPALRRQVQ--YCAPDWLIKQLSSEYGESVMDALLTDALGRPPV 177
Query: 260 SLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQD 319
+LR N G A L + H L L + RV+ G +V + +G+ VQD
Sbjct: 178 TLRRNPLAGDASAFLRAMGEISVEKHPL---LPDCYRVQGG--DVTRTDAFAQGMFHVQD 232
Query: 320 ESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA- 378
++ L +DPQ G +++D CAAPGGK+ +A + +G +YA D++ R++++ + A
Sbjct: 233 LASQLCCLALDPQLGDTVLDLCAAPGGKSFTLAELMEDRGQLYAFDLHTNRVKLIAQGAQ 292
Query: 379 KLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
+LH RT A L + + D+VL D PCSGLGV+ +
Sbjct: 293 RLHLQCVHARTGDASLH---NPELPQADRVLCDVPCSGLGVIRR 333
>gi|417837315|ref|ZP_12483554.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
johnsonii pf01]
gi|338762510|gb|EGP13778.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
johnsonii pf01]
Length = 438
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/327 (30%), Positives = 169/327 (51%), Gaps = 36/327 (11%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
DL D L T IV GTI+++ +L++ + L + S ++PLLL + Y+ L+
Sbjct: 34 DLKPADKALATRIVYGTIQYKIFLEYQLKPLIKTKLRDSFLKPLLL----MSAYQYFFLE 89
Query: 166 -MPPYAVVDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
+P A+ DE +LAK + +G+ L+NGILR L + LP ND +
Sbjct: 90 KVPANAIFDEANKLAKKYSKRNSGSYKLINGILR--ALERQGEILP----PTNDLVEY-- 141
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKG--------VTRADL 274
L+ S P W+V + G+ + +++V +N + S+R +++ + + +
Sbjct: 142 LSIKESFPKWLVEYLLDHFGENKTKEILVRSNQPAANSIRMTTKESDFEEIKEELKKDNF 201
Query: 275 VMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 334
+ + L PH L+L+ K G V Q L K G +QD +A L V D +
Sbjct: 202 SFEESSL-TPHNLNLN-------KGG---VAQTALFKNGKITIQDAAASLAVDAFDFKGS 250
Query: 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 394
+ ++D C+APGGKT+ +A L+ G V A+DI++ +LR++ A+ V+ ++T D
Sbjct: 251 EQVLDSCSAPGGKTVQIAENLT-TGSVIALDIHENKLRLVRNAAERLHVSDKVKTKALDA 309
Query: 395 RTFADN-STVKCDKVLLDAPCSGLGVL 420
R + + + DK+L+DAPCSGLG++
Sbjct: 310 RKAKEYFNQGQFDKILVDAPCSGLGLI 336
>gi|385825620|ref|YP_005861962.1| RNA methylase [Lactobacillus johnsonii DPC 6026]
gi|329667064|gb|AEB93012.1| RNA methylase [Lactobacillus johnsonii DPC 6026]
Length = 434
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 168/326 (51%), Gaps = 38/326 (11%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
DL D L T IV GTI+++ +L++ + L + S ++PLLL + Y+ L+
Sbjct: 34 DLKPADKALATRIVYGTIQYKIFLEYQLKPLIKTKLRDSFLKPLLL----MSAYQYFFLE 89
Query: 166 -MPPYAVVDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
+P A+ DE +LAK + +G+ L+NGILR L + LP ND +
Sbjct: 90 KVPANAIFDEANKLAKKYSKRNSGSYKLINGILR--ALERQGEILP----PTNDLVEY-- 141
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKG--------VTRADL 274
L+ S P W+V + G+ + +++V +N + S+R +++ + + +
Sbjct: 142 LSIKESFPKWLVEYLLDHFGENKTKEILVRSNQPAANSIRMTTKESDFEEIKEELKKDNF 201
Query: 275 VMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 334
+ + L PH L+L+ K G V Q L K G +QD +A L V D +
Sbjct: 202 SFEESSL-TPHNLNLN-------KGG---VAQTALFKNGKITIQDAAASLAVDAFDFKGS 250
Query: 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 394
+ ++D C+APGGKT+ +A L+ G V A+DI++ +LR++ A+ V+ ++T D
Sbjct: 251 EQVLDACSAPGGKTVQIAENLT-TGSVIALDIHENKLRLVRNAAERLHVSDKVKTKALDA 309
Query: 395 RTFADNSTVKCDKVLLDAPCSGLGVL 420
R + + DK+L+DAPCSGLG++
Sbjct: 310 RK---ANQGQFDKILVDAPCSGLGLI 332
>gi|282910789|ref|ZP_06318592.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus WBG10049]
gi|384867901|ref|YP_005748097.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus TCH60]
gi|282325394|gb|EFB55703.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus WBG10049]
gi|312438406|gb|ADQ77477.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus TCH60]
Length = 435
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/328 (30%), Positives = 166/328 (50%), Gaps = 44/328 (13%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L+ D L T+IV GT++ + LD + + ++ + Q+L + Y+ V LD
Sbjct: 35 ELNVMDKALFTEIVYGTVKRKYTLDFYLRPFVK-----TKIKAWVRQLLWMSIYQYVYLD 89
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQARA 222
+P +A+++E V +AK GN+VNGILR ++ L D N + PK +
Sbjct: 90 KVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK---------KR 140
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQLN 279
+A YS P W++ W + G EE ++ S ++RAN +TRA D++ +L
Sbjct: 141 MAIEYSMPKWIIDHWATHYGLEETETILQSFLETTSTTVRAN----LTRASLDDIIEKLQ 196
Query: 280 L----LKVPHELS--LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQP 333
++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 197 DEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNVDR 248
Query: 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTIHA 392
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 249 HDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAFQH 306
Query: 393 DLRTFADNSTVKCDKVLLDAPCSGLGVL 420
D D + DK+L+DAPCSGLGV+
Sbjct: 307 DATKPYDKT---YDKILVDAPCSGLGVM 331
>gi|325957114|ref|YP_004292526.1| 16S rRNA methyltransferase B [Lactobacillus acidophilus 30SC]
gi|325333679|gb|ADZ07587.1| 16S rRNA methyltransferase B [Lactobacillus acidophilus 30SC]
Length = 442
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 112/360 (31%), Positives = 177/360 (49%), Gaps = 40/360 (11%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
DL D L T +V GTI++R +L++ + L + T ++PLLL + Y+IV LD
Sbjct: 37 DLSQADQNLATKVVYGTIQYRLFLEYQLKGLVRIKLTEKYLKPLLL----MSIYQIVFLD 92
Query: 166 -MPPYAVVDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
+P AV+DE +LAK + + +VNGILR + + LP + + + +
Sbjct: 93 KVPNRAVLDEANKLAKQFGKHHSSGYRVVNGILRSFI----RRGVILP----DAKDEIKY 144
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
L+ S P W+V + + G + KL+ N S+R ++ D N LK
Sbjct: 145 LSVKESMPEWLVNYFANHWGMDRTKKLLESINQSAKNSVRISA-----LCDRDQVFNQLK 199
Query: 283 V----PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVD-PQPGQSI 337
P +L +++ I G V Q+ L K G +QDE+A LV+ D + I
Sbjct: 200 TEGYEPEWSNLSVNDII---LGHGGVSQSDLFKRGKLTIQDEAASLVIESFDFDSKEEHI 256
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397
+D C+APGGKT+ MA + G V A+DI++ +L ++ E AK V + ++ D R
Sbjct: 257 LDACSAPGGKTVQMAERVV-VGDVTALDIHEKKLHLVKENAKRMNVANKVKIKACDARKV 315
Query: 398 AD-NSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
D + K+L+DAPCSGLG+L R +RY KT +Q+L + + +L
Sbjct: 316 QDVFKPGEFTKILVDAPCSGLGLL----------RRKPEIRYTKTERDLQNLQKIQLAIL 365
>gi|365853491|ref|ZP_09393760.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
parafarraginis F0439]
gi|363712381|gb|EHL96075.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
parafarraginis F0439]
Length = 444
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 105/353 (29%), Positives = 174/353 (49%), Gaps = 28/353 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDH-LICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+ D D L T IV G I+ R L++ L + EKT E + ++L Y++ LD
Sbjct: 38 MSDVDKGLFTTIVYGVIQHRLTLEYQLAPFIKEPEKT----ENWVKELLYSAMYQLQYLD 93
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P A+ DE++++AK G V GIL ++ D L P + + L+
Sbjct: 94 RVPKRAIFDESIKIAKSMGHDGTRRFVTGILHQM----DRKGLSNP---SDIKDPLERLS 146
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
S P W+V+ + LG+++A + N P S+R N K ++++DL+ QL+
Sbjct: 147 IQTSVPQWLVKLVSDQLGEKKAATIFRSLNRAPKQSVRVNKHK-ISKSDLLGQLSKAGFD 205
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
S E + ++ G V+ + +GL A+QDESA L V + + I+D C+AP
Sbjct: 206 PHPSEVASEGLVLEKG--QVLHSSFFDDGLVAIQDESAMLPVESMPIKADDLILDACSAP 263
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404
GGKT +A+ L +G V A+DI++ +LR +N A+ ++ + T D R + +
Sbjct: 264 GGKTTQIAANLK-EGRVVALDIHQNKLRNVNHNAQRLGLSERVETHALDARQVDEQFDDE 322
Query: 405 -CDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
D +L+DAPC+G G++ R +RY KT + HL E + +L
Sbjct: 323 FFDHILVDAPCTGFGLM----------RRKPEIRYDKTMADVNHLAEIQGQIL 365
>gi|315038633|ref|YP_004032201.1| rRNA methylase [Lactobacillus amylovorus GRL 1112]
gi|385817900|ref|YP_005854290.1| 16S rRNA methyltransferase B [Lactobacillus amylovorus GRL1118]
gi|312276766|gb|ADQ59406.1| rRNA methylase [Lactobacillus amylovorus GRL 1112]
gi|327183838|gb|AEA32285.1| 16S rRNA methyltransferase B [Lactobacillus amylovorus GRL1118]
Length = 442
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 113/360 (31%), Positives = 177/360 (49%), Gaps = 40/360 (11%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
DL D L T IV GTI++R +L++ + L + T ++PLLL + Y+IV LD
Sbjct: 37 DLSQADQNLATKIVYGTIQYRLFLEYQLKGLVRIKLTEKYLKPLLL----MSIYQIVFLD 92
Query: 166 -MPPYAVVDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
+P AV+DE +LAK + + +VNGILR + + LP + + + +
Sbjct: 93 KVPNRAVLDEANKLAKQFGKHHSSGYRVVNGILRSFI----RRGVILP----DAKDEIKY 144
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
L+ S P W+V + + G + KL+ N S+R ++ D N LK
Sbjct: 145 LSVKESMPEWLVNYFANHWGMDRTKKLLESINQPAKNSVRISA-----LCDRDQVFNQLK 199
Query: 283 V----PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVD-PQPGQSI 337
P +L +++ I G V Q+ L K G +QDE+A LV+ D + I
Sbjct: 200 TEGYEPEWSNLSVNDII---LGHGGVSQSDLFKRGKLTIQDEAASLVIESFDFDSKEEHI 256
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397
+D C+APGGKT+ MA + G V A+DI++ +L ++ E AK V + ++ D R
Sbjct: 257 LDACSAPGGKTVQMAERVV-VGDVTALDIHEKKLHLVKENAKRMNVANKVKIKACDARKV 315
Query: 398 AD-NSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
D + K+L+DAPCSGLG+L R +RY KT +Q+L + + +L
Sbjct: 316 QDVFKPGEFTKILVDAPCSGLGLL----------RRKPEIRYTKTERDLQNLQKIQLAIL 365
>gi|418316081|ref|ZP_12927525.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21340]
gi|365241752|gb|EHM82487.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21340]
Length = 435
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 100/330 (30%), Positives = 169/330 (51%), Gaps = 48/330 (14%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNAMDKALFTEIVYGTVKRKFTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQ 277
+ +A YS P W++ W + G E+ ++ S ++RAN +TRA D++ +
Sbjct: 139 KRMAIEYSMPKWIIDHWATHYGLEKTETILQSFLETTSTTVRAN----LTRASLDDIIEK 194
Query: 278 LNL----LKVPHELS--LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
L ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 390
+++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 247 DRHDNVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAF 304
Query: 391 HADLRTFADNSTVKCDKVLLDAPCSGLGVL 420
D D + DK+L+DAPCSGLGV+
Sbjct: 305 QHDATKPYDKT---YDKILVDAPCSGLGVM 331
>gi|347532281|ref|YP_004839044.1| 16S rRNA methyltransferase B [Roseburia hominis A2-183]
gi|345502429|gb|AEN97112.1| 16S rRNA methyltransferase B [Roseburia hominis A2-183]
Length = 444
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/324 (28%), Positives = 164/324 (50%), Gaps = 20/324 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD R+ +T + GTI+ + LD+++ + M+P++ ILR+G Y++ +D
Sbjct: 40 LDKRERAFLTRVAEGTIQRQIELDYILDQF--SKVKVRKMKPVIRAILRMGVYQLKYMDS 97
Query: 166 MPPYAVVDENVRLAKVALRPGAGNL---VNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
+P A +E V+LAK + G G L VNG+LR + D + P ++ +A
Sbjct: 98 VPASAACNEAVKLAK---KKGFGQLSGFVNGVLRGVSRGLDQLTYPKESVDA-----VKA 149
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA--DLVMQLNL 280
+ YS P W+V +W G+E +++ + + ++RAN + A + + +
Sbjct: 150 WSVCYSMPEWIVAQWIGDYGKERTKEILAASLLEAPITVRANLERITPEALAERFKEEGV 209
Query: 281 LKVPHELSLHLD-EFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 339
VP + + + G ++ KEGL VQD S+ +V P+ G +D
Sbjct: 210 TAVPLDTEKYPGLSYAYTIFGFDHLNGLSSFKEGLFYVQDISSMMVAEYAAPKEGDHCID 269
Query: 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 399
CAAPGGK++++A L G G V A D+++ ++ +++E K ++ ++ T T D
Sbjct: 270 VCAAPGGKSIHLAEKLRGTGHVEARDVSEQKVALIDENIKRCRLTNI--TAKCQDATVLD 327
Query: 400 NSTVKCDKVLL-DAPCSGLGVLSK 422
++V+ VL+ D PCSGLGVL +
Sbjct: 328 ETSVRTADVLIADLPCSGLGVLRR 351
>gi|325977628|ref|YP_004287344.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
gi|386337149|ref|YP_006033318.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
gallolyticus subsp. gallolyticus ATCC 43143]
gi|325177556|emb|CBZ47600.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
gi|334279785|dbj|BAK27359.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
gallolyticus subsp. gallolyticus ATCC 43143]
Length = 440
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/333 (30%), Positives = 161/333 (48%), Gaps = 51/333 (15%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L +D LVT+IV GT+ + L+ L H K ++ + +L + Y++V LD
Sbjct: 40 LSPKDKSLVTEIVYGTVARKITLE---WYLAHYIKDRDKLDSWVYYLLMLSLYQLVYLDK 96
Query: 166 MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +AVV++ V +AK + GA VN +LR+ LP PK + + + +
Sbjct: 97 IPAHAVVNDAVNIAKNRGNKKGAEKFVNAVLRRFT----KEELPNPK---TIKRKNKRYS 149
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
+YS PVW+V++ G+E A +M S +R + VT D + +
Sbjct: 150 VLYSLPVWLVKKLIDQFGEERAAAIM------QSLFVRNKASIRVTDPDKLAE------- 196
Query: 285 HELSLHLDEFIRVKTGLQNVIQA--GLLK------------EGLCAVQDESAGLVVAVVD 330
I+ TG + I + GL+K G +QDES+ LV +D
Sbjct: 197 ----------IKAATGAEQSILSPVGLVKTSGHFAGTDYFANGDITIQDESSQLVAPTLD 246
Query: 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTI 390
Q + I+D CAAPGGKT +MAS L +G + A+D+ +L ++ + AK V I T
Sbjct: 247 IQGNEDILDACAAPGGKTTHMASYLK-KGHITALDLYDHKLTLVMDNAKRLHVADKISTQ 305
Query: 391 HADLRTFADNSTVKC-DKVLLDAPCSGLGVLSK 422
D T ++ DK+L+DAPCSG+G++ +
Sbjct: 306 KMDATTVHEHFVPDSFDKILVDAPCSGIGLIRR 338
>gi|229197976|ref|ZP_04324690.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus m1293]
gi|228585455|gb|EEK43559.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus m1293]
Length = 360
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 135/258 (52%), Gaps = 12/258 (4%)
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+AT
Sbjct: 7 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT 61
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHP+W+V+ WT G E A K+ N P + R N K +T + + L +
Sbjct: 62 --SHPIWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDK-ITVEEAIALLASEGIEA 118
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ D+ I+++ G NV K+G ++QDES+ LV ++P G ++D CAAPG
Sbjct: 119 KRGDLSDDAIQIEKG--NVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVVLDSCAAPG 176
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404
GKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 177 GKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLGNV-ETKALDARKVQEHFANET 235
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 236 FDKILVDAPCSGFGVIRR 253
>gi|406891586|gb|EKD37168.1| hypothetical protein ACD_75C01230G0001, partial [uncultured
bacterium]
Length = 332
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 100/325 (30%), Positives = 167/325 (51%), Gaps = 25/325 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L + + L +V G +R R+YLD ++ LL + + ++P++ Q + +G Y++ L+
Sbjct: 6 LPNNERNLAMQLVYGVLRHRQYLDRILQLL--SKTPLTKIDPIIHQAIVVGLYQLFFLER 63
Query: 166 MPPYAVVDENVRLAKVALRPGA-GNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA-RAL 223
+PP A V+E V K A P VNGILR+ + K + D+A +A
Sbjct: 64 IPPSAAVNEMVECCKTAGIPKRLEGFVNGILRQSIRQKATLA---------DQAHRDKAG 114
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD--LVMQLNLL 281
A I +HP W+V RW K+ G++EA+++ NN +P +R NS K ++R D L+++ N +
Sbjct: 115 AQIVNHPEWLVARWCKHFGEDEALRICRANNREPLLVVRTNSVK-ISRDDFRLLLEQNQI 173
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP-QPGQSIVDC 340
+ H + D + G L EG VQDE+A L ++ P +P + +D
Sbjct: 174 -IAHPGNYAGDALVLPDYQGSIASIPGYL-EGYFQVQDEAAQLATCLLGPFRPATTYLDG 231
Query: 341 CAAPGGKTLYMASCLSGQGL-VYAIDINKGRLRILNET-AKLHQVNSVIRTIHA-DLRTF 397
CA GGKT ++ + L ++A++ RL+ + E ++L S + IHA L+
Sbjct: 232 CAGLGGKTSHLLQLAAHHDLSIHAVEPEPHRLKKMQENISRLGPEKSPV--IHAMQLQQL 289
Query: 398 ADNSTVKCDKVLLDAPCSGLGVLSK 422
+ D +L+DAPCSG GV +
Sbjct: 290 TRHDLPLFDGILIDAPCSGTGVTGR 314
>gi|14590913|ref|NP_142986.1| fmu protein [Pyrococcus horikoshii OT3]
gi|3257494|dbj|BAA30177.1| 450aa long hypothetical fmu protein [Pyrococcus horikoshii OT3]
Length = 450
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 152/297 (51%), Gaps = 14/297 (4%)
Query: 124 RWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVAL 183
+WR +D ++ + + ++ L +LRIG +E+ + P D VR+ K
Sbjct: 59 KWRAKIDFILNSVLKGSRV-EDLDTYLANLLRIGTFEMKFKGVNPAIATDSVVRVVKEKF 117
Query: 184 RPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQ 243
N +LR++ K N L +L+ DR + L+ +SHP W V K LG
Sbjct: 118 DLTRAKFANAVLREVE--KFNVERALKRLKERDRIEW--LSVRFSHPRWYVEYVVKLLGY 173
Query: 244 EEAIKLMVWNNSDPSFSLRANSRK-GVTRADLVMQLNLLKVPHELSLH-LDEFIRVKTGL 301
+E ++L++ N + +R N+ K V R ++ N ++V SL +D+ ++V
Sbjct: 174 DETVRLLLSNLRPQRYYIRVNTLKVDVDRVKRYLEENGVRV----SLTPVDDVLKVLEYE 229
Query: 302 QNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLV 361
+ V + ++G +QD ++ V V++P+PG+ ++D AAPG KT + A+ + +G +
Sbjct: 230 KPVTKLEWYRKGYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENRGEI 289
Query: 362 YAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLG 418
A+D + RL + E K V +V + +HAD +++ + K DK++LDAPCS G
Sbjct: 290 VAVDYSYDRLIKMRERMKKLGVKNV-KLVHADGQSYTEKE--KFDKIILDAPCSSSG 343
>gi|297570244|ref|YP_003691588.1| sun protein [Desulfurivibrio alkaliphilus AHT2]
gi|296926159|gb|ADH86969.1| sun protein [Desulfurivibrio alkaliphilus AHT2]
Length = 501
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 112/378 (29%), Positives = 171/378 (45%), Gaps = 58/378 (15%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-M 166
D RD +LV +V +R R +LDH++ + + + M+PL L LR+G +++ D +
Sbjct: 51 DRRDRQLVRALVYEVLRRRGFLDHVVAR--YAKHPLAKMKPLTLAALRLGLAQLLYFDRL 108
Query: 167 PPYAVVDENVRLAKVALRP-GAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
PP A +DE +R K A +P VNG+LR +RA+ LA
Sbjct: 109 PPAAAIDETIRALKAARQPRWITGFVNGLLRN---------------AARERAELLRLAA 153
Query: 226 ----IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
S P W+ +R + LGQE A N P LR N+ K + A L QL
Sbjct: 154 EQCDWLSVPAWLRQRREQQLGQERAYHRSRAENQPPPLVLRVNTAK-INCATLAEQLQHN 212
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVV----DPQPGQSI 337
+ E S +R+ + V + EG AVQDE+A LV ++ DP+PG
Sbjct: 213 GIEVEESTFAPAALRLPSYHGRVEELPGFNEGWFAVQDEAAQLVTMLLQKEPDPEPGALF 272
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET-AKL-------------HQV 383
+D CA GGKT ++A L + + A++ + GR +L E A+L ++
Sbjct: 273 LDACAGLGGKTAHLAELLPAESRLVALEPHTGRFALLAENLARLGHKFFKLPPDGPPEEL 332
Query: 384 NSVIRTIHA-----------DLRTFA---DNSTV--KCDKVLLDAPCSGLGVLSKTCVGI 427
++T A L +FA D+++V +LLDAPCSGLGV+ +
Sbjct: 333 ARRLQTAAAGKPAPLLLCPQTLASFARLLDSASVAPAFQGILLDAPCSGLGVVRRHPDIR 392
Query: 428 GDWRIWKSLRYCKTSFLM 445
+ + RYCK +
Sbjct: 393 WNRQPEDLPRYCKQQIAL 410
>gi|253731834|ref|ZP_04865999.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|253733545|ref|ZP_04867710.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus TCH130]
gi|385781445|ref|YP_005757616.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 11819-97]
gi|417899965|ref|ZP_12543864.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21259]
gi|418572296|ref|ZP_13136508.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21333]
gi|421150103|ref|ZP_15609759.1| RNA-binding protein [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|443639551|ref|ZP_21123557.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21196]
gi|253724433|gb|EES93162.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|253728599|gb|EES97328.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus TCH130]
gi|341843573|gb|EGS84796.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21259]
gi|364522434|gb|AEW65184.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 11819-97]
gi|371984780|gb|EHP01889.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21333]
gi|394329493|gb|EJE55595.1| RNA-binding protein [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|443406758|gb|ELS65329.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21196]
Length = 435
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 100/330 (30%), Positives = 168/330 (50%), Gaps = 48/330 (14%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNAMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQ 277
+ +A YS P W++ W + G E+ ++ S ++RAN +TRA D++ +
Sbjct: 139 KRMAIEYSMPKWIIDHWATHYGLEKTETILQSFLETTSTTVRAN----LTRASLDDIIEK 194
Query: 278 LNL----LKVPHELS--LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
L ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 390
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 247 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAF 304
Query: 391 HADLRTFADNSTVKCDKVLLDAPCSGLGVL 420
D D + DK+L+DAPCSGLGV+
Sbjct: 305 QHDATKPYDKT---YDKILVDAPCSGLGVM 331
>gi|418312423|ref|ZP_12923932.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21334]
gi|365238068|gb|EHM78905.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21334]
Length = 435
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 100/330 (30%), Positives = 168/330 (50%), Gaps = 48/330 (14%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNAMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQ 277
+ +A YS P W++ W + G E+ ++ S ++RAN +TRA D++ +
Sbjct: 139 KRMAIEYSMPKWIIDHWATHYGLEKTETILQSFLETTSTTVRAN----LTRASLDDIIEK 194
Query: 278 LNL----LKVPHELS--LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
L ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 390
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 247 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAF 304
Query: 391 HADLRTFADNSTVKCDKVLLDAPCSGLGVL 420
D D + DK+L+DAPCSGLGV+
Sbjct: 305 QHDATKPYDKT---YDKILVDAPCSGLGVM 331
>gi|312869942|ref|ZP_07730081.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus oris
PB013-T2-3]
gi|417886267|ref|ZP_12530414.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus oris
F0423]
gi|311094527|gb|EFQ52832.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus oris
PB013-T2-3]
gi|341593765|gb|EGS36590.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus oris
F0423]
Length = 449
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/324 (31%), Positives = 162/324 (50%), Gaps = 26/324 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L+D D RL T IV GT++ + L++ + ++ S +E LLL L Y+ L+
Sbjct: 40 LNDSDRRLATRIVYGTLQHQLTLEYWLQPFVKGKRLDSWVETLLLTAL----YQYHYLER 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +AV DE + +AK PG V G+L ++ P + + R LA
Sbjct: 96 VPDWAVTDETIEIAKHWGNPGIRKFVTGVLHAVL------RRGFPDFDQVQDPEER-LAV 148
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR-ADLVMQLNLLKVP 284
YS P W+V G+ +A +++ N +R N+ VT A + L+ +
Sbjct: 149 QYSIPRWLVHELGAQYGRAQAAQILKAVNDPARLVVRVNT--AVTDLATVKAGLHAAGIE 206
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
++ S + + + G ++ + L G VQDESA L V + QPG ++D CAAP
Sbjct: 207 YQESRVVPNALVITKG--EILDSPLFATGQITVQDESAMLAVDSMAVQPGDRVLDACAAP 264
Query: 345 GGKTLYMASCL--SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR----TFA 398
GGKT+ +A L + G V A+DI++ + R++ + A+ QV+ + D R FA
Sbjct: 265 GGKTVQIAERLDPTAGGRVDALDIHQHKARLIQKNARRMQVDDRVVAHTLDARRVDEEFA 324
Query: 399 DNSTVKCDKVLLDAPCSGLGVLSK 422
D S DK+L+DAPCSG+G+L +
Sbjct: 325 DES---FDKILVDAPCSGIGLLRR 345
>gi|423335551|ref|ZP_17313326.1| rRNA methylase [Lactobacillus reuteri ATCC 53608]
gi|337728781|emb|CCC03900.1| rRNA methylase [Lactobacillus reuteri ATCC 53608]
Length = 449
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 103/343 (30%), Positives = 171/343 (49%), Gaps = 37/343 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D+D RL T+I+ G ++ + L++ + ++ ++P + +L Y+ L+
Sbjct: 41 LADKDRRLATNIIYGVLQHKLTLEYWLNGFVQGKR----LDPWVKTLLLSALYQYHYLER 96
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +AV DE++ +AK PG V G+L ++ LP L + R L+
Sbjct: 97 VPDWAVTDESIEIAKRRGNPGIRKFVTGVLHAIL------RKGLPDLRQINERDLR-LSI 149
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQ-LNLLKVP 284
S P W+V T G+E+ K++ N +R N+ K T V Q L+ +
Sbjct: 150 ENSVPRWLVNELTSEYGEEDTEKILQSINEPAHQVIRVNTAK--TNLPTVKQVLDAAGIE 207
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
++ S + + G +I + L K G +QDESA LVV + +PG ++D CAAP
Sbjct: 208 YQESQVAQNALVITKG--EIISSDLFKNGEITIQDESAMLVVESMHIEPGDKVLDACAAP 265
Query: 345 GGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA-DLRT----FA 398
GGKT+ +A L+ + G V A+DI++ ++R++ + A+ V + T HA D R F
Sbjct: 266 GGKTVQIAEALADEDGHVDALDIHQHKVRLIEKNARRLGVEKRV-TAHALDAREVDQLFD 324
Query: 399 DNSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKT 441
D S +K+L+DAPCSG+G+L + +RY KT
Sbjct: 325 DES---FNKILVDAPCSGIGLLRRK----------PEIRYTKT 354
>gi|342732283|ref|YP_004771122.1| ribosomal RNA small subunit methyltransferase B [Candidatus
Arthromitus sp. SFB-mouse-Japan]
gi|384455685|ref|YP_005668280.1| ribosomal RNA small subunit methyltransferase B [Candidatus
Arthromitus sp. SFB-mouse-Yit]
gi|417960649|ref|ZP_12603201.1| ribosomal RNA small subunit methyltransferase B [Candidatus
Arthromitus sp. SFB-1]
gi|417963639|ref|ZP_12605533.1| Putative NusB/RsmB/TIM44 sun protein [Candidatus Arthromitus sp.
SFB-3]
gi|417966369|ref|ZP_12607749.1| hypothetical protein SFB5_031G4 [Candidatus Arthromitus sp. SFB-5]
gi|417969243|ref|ZP_12610196.1| NusB/NOL1/NOP2/sun rRNA biosynthesis family protein [Candidatus
Arthromitus sp. SFB-co]
gi|418016314|ref|ZP_12655879.1| ribosomal RNA small subunit methyltransferase B [Candidatus
Arthromitus sp. SFB-mouse-NYU]
gi|418372537|ref|ZP_12964629.1| NusB/NOL1/NOP2/sun rRNA biosynthesis family protein [Candidatus
Arthromitus sp. SFB-mouse-SU]
gi|342329738|dbj|BAK56380.1| ribosomal RNA small subunit methyltransferase B [Candidatus
Arthromitus sp. SFB-mouse-Japan]
gi|345506649|gb|EGX28943.1| ribosomal RNA small subunit methyltransferase B [Candidatus
Arthromitus sp. SFB-mouse-NYU]
gi|346984028|dbj|BAK79704.1| ribosomal RNA small subunit methyltransferase B [Candidatus
Arthromitus sp. SFB-mouse-Yit]
gi|380330468|gb|EIA21728.1| ribosomal RNA small subunit methyltransferase B [Candidatus
Arthromitus sp. SFB-1]
gi|380332202|gb|EIA23084.1| Putative NusB/RsmB/TIM44 sun protein [Candidatus Arthromitus sp.
SFB-3]
gi|380338230|gb|EIA27148.1| NusB/NOL1/NOP2/sun rRNA biosynthesis family protein [Candidatus
Arthromitus sp. SFB-co]
gi|380342206|gb|EIA30651.1| NusB/NOL1/NOP2/sun rRNA biosynthesis family protein [Candidatus
Arthromitus sp. SFB-mouse-SU]
gi|380342684|gb|EIA31125.1| hypothetical protein SFB5_031G4 [Candidatus Arthromitus sp. SFB-5]
Length = 441
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 103/326 (31%), Positives = 164/326 (50%), Gaps = 40/326 (12%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH--DEKTFSSMEPLLLQILRIGFYEIVKL 164
L D D RLVT+IV GTIR++ +D ++ DE S++ ILR Y++ L
Sbjct: 36 LKDIDKRLVTEIVYGTIRYKLTIDDILNKFVKKLDENNISTI------ILRSAIYQLKYL 89
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
D +P Y+V++E+V AK + +G VNG+LR N L K + + L
Sbjct: 90 DKIPEYSVLNESVEAAKRLCKNKSG-FVNGVLR--------NYLRNKKFIDSGK---NTL 137
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
YS WMV+ + K + I+LM N R NS K +++ D + +
Sbjct: 138 QYEYSFSSWMVKLF-KSQYPKNYIELMRALNKRSETCYRINS-KMISKQDFIERF----- 190
Query: 284 PHELSLH-LDEF---IRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 339
E + + EF I++K+ + N+ + L K G +VQ S+ + +++P+ G I+D
Sbjct: 191 KDEFRIEDIKEFKNSIKIKSPI-NISKLDLYKNGFISVQGLSSQIACEILNPKEGDVIID 249
Query: 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA---KLHQVNSVIRTIHADLRT 396
CAAPGGK+ Y+A + + + + DI ++ ++ +A KL ++ I
Sbjct: 250 LCAAPGGKSTYIAELSNDKCKLISCDIYDHKIDLIKNSANRLKLSSIDCFINDATILNEK 309
Query: 397 FADNSTVKCDKVLLDAPCSGLGVLSK 422
F D K DKVL+DAPCSGLGV++K
Sbjct: 310 FID----KADKVLVDAPCSGLGVINK 331
>gi|21282829|ref|NP_645917.1| hypothetical protein MW1100 [Staphylococcus aureus subsp. aureus
MW2]
gi|49486056|ref|YP_043277.1| hypothetical protein SAS1151 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|297208139|ref|ZP_06924570.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus ATCC 51811]
gi|300912219|ref|ZP_07129662.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus TCH70]
gi|418934119|ref|ZP_13487942.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIGC128]
gi|418988038|ref|ZP_13535711.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1835]
gi|448742277|ref|ZP_21724227.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus KT/314250]
gi|21204268|dbj|BAB94965.1| MW1100 [Staphylococcus aureus subsp. aureus MW2]
gi|49244499|emb|CAG42928.1| hypothetical protein SAS1151 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|296887382|gb|EFH26284.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus ATCC 51811]
gi|300886465|gb|EFK81667.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus TCH70]
gi|377719826|gb|EHT43996.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1835]
gi|377770862|gb|EHT94621.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIGC128]
gi|445546992|gb|ELY15268.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus KT/314250]
Length = 435
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 100/330 (30%), Positives = 168/330 (50%), Gaps = 48/330 (14%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNAMDKALFTEIVYGTVKRKFTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQ 277
+ +A YS P W++ W + G E+ ++ S ++RAN +TRA D++ +
Sbjct: 139 KRMAIEYSMPKWIIDHWATHYGLEKTETILQSFLETTSTTVRAN----LTRASLDDIIEK 194
Query: 278 LNL----LKVPHELS--LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
L ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 390
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 247 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAF 304
Query: 391 HADLRTFADNSTVKCDKVLLDAPCSGLGVL 420
D D + DK+L+DAPCSGLGV+
Sbjct: 305 QHDATKPYDKT---YDKILVDAPCSGLGVM 331
>gi|296110622|ref|YP_003621003.1| rRNA methylase () [Leuconostoc kimchii IMSNU 11154]
gi|339490286|ref|YP_004704791.1| 16S rRNA methyltransferase GidB [Leuconostoc sp. C2]
gi|295832153|gb|ADG40034.1| rRNA methylase (putative) [Leuconostoc kimchii IMSNU 11154]
gi|338851958|gb|AEJ30168.1| 16S rRNA methyltransferase B [Leuconostoc sp. C2]
Length = 457
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 99/354 (27%), Positives = 172/354 (48%), Gaps = 30/354 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L + D RL+T +V G I+ R ++ + ++K ++ + ++L +++ LD
Sbjct: 41 LGEADKRLLTTLVYGVIQHRLTFEYWLTPFIGNKK----IDAWVRELLYTAMFQMEFLDK 96
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQARAL 223
+P +A+ +E++ +AK+ G G V IL + L+D + + P + L
Sbjct: 97 IPEHAIFNESIEVAKILGHVGTGKFVTAILHNIARQGLRDIDDIKDP---------IQRL 147
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
+ S PVW++ K G+E+ L+ N PS S+R N+ T D+V L
Sbjct: 148 SIEKSLPVWLINELVKQHGEEKTRALVETINDAPSQSIRVNTVVA-TDDDVVKSLESENY 206
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVD-PQPGQSIVDCCA 342
SL D V G +V + +G +QDESA L V + ++I+D A
Sbjct: 207 TTVKSLVADHAYIVSGG--HVASSKAYHDGWLTIQDESAMLPVESMHLTAEVKTILDAAA 264
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402
APGGKT +A C+S + A+DI++ +++++N A+ V I+T D R +
Sbjct: 265 APGGKTTQIAQCISADAKITALDIHEHKIKLINNNAQRLHVADRIQTRILDARKVPNEID 324
Query: 403 VKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
K D++L+DAPCSG G+L + +RY KT +Q+L + ++ +L
Sbjct: 325 TKFDRILVDAPCSGFGLLRRK----------PEIRYDKTLEDVQNLAQLQFDIL 368
>gi|227500111|ref|ZP_03930182.1| possible rRNA SAM-dependent methyltransferase RmsB [Anaerococcus
tetradius ATCC 35098]
gi|227217826|gb|EEI83123.1| possible rRNA SAM-dependent methyltransferase RmsB [Anaerococcus
tetradius ATCC 35098]
Length = 433
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 101/314 (32%), Positives = 148/314 (47%), Gaps = 18/314 (5%)
Query: 112 LRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAV 171
L T ++ G + + YLD++I L + + +L IL +G Y I L YA+
Sbjct: 35 LAYATKLIYGVLENKIYLDYMIGKLS--KVKIKKIHKNVLTILEMGLYNIHFLATKDYAI 92
Query: 172 VDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPV 231
VD+ V L K + A N VN ILR + N L K+ ND +AL+ YS P
Sbjct: 93 VDKLVELCKKKNKRSA-NFVNAILRNFI----RNEEDLAKIYIND--DIKALSIRYSMPE 145
Query: 232 WMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHL 291
+ R G + + N + S+R NS K R L +L L LS
Sbjct: 146 EISRYIYDNYGMAYTKNFLRYTNDEARLSIRVNSLK-TDRESLKKRLEALGYELSLSKIS 204
Query: 292 DE--FIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 349
D I +GL N ++ KEGL +Q E++ V V++P+ I+D CAAPG KT
Sbjct: 205 DRALIIHNPSGLANSLE---FKEGLFTIQQEASMKTVEVLNPKRNSRILDICAAPGTKTS 261
Query: 350 YMASCLSGQGLVYAIDINKGRLRILNET-AKLHQVNSVIRTIHADLRTFADNSTVKCDKV 408
Y+A S G + A DI+ +L ++ E +L N I++ D F D +
Sbjct: 262 YLAEYTSNTGKIIANDISTNKLCLIKENIERLALTNIEIKSF--DGSVFNKEYEKSFDYI 319
Query: 409 LLDAPCSGLGVLSK 422
L+DAPCSGLGV+++
Sbjct: 320 LVDAPCSGLGVMAR 333
>gi|83319809|ref|YP_424196.1| rRNA methyltransferase RsmB (sun protein) [Mycoplasma capricolum
subsp. capricolum ATCC 27343]
gi|83283695|gb|ABC01627.1| rRNA methyltransferase RsmB (sun protein), putative [Mycoplasma
capricolum subsp. capricolum ATCC 27343]
Length = 428
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 92/320 (28%), Positives = 165/320 (51%), Gaps = 23/320 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K+L+ +D V ++V G I + +LD+L+ L +KT ++ +LL I Y+++ L
Sbjct: 40 KNLNQQDKDFVFNLVHGVISNKIHLDYLLAKLIDVKKTSIDLQVILL----ISLYQMIYL 95
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
+ +P YA+V+E+V L K + A N +N IL K + KD LE N + L
Sbjct: 96 NSIPNYAIVNESVNLIKTTSQKQA-NFINAILNKFLRFKD------KYLEINLDNKDLEL 148
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
++S + K +E +++V N+ P +R N+ K +T L + + +
Sbjct: 149 CILHSFSYELYLMLIKQYDKEIVNQIVVNNHQIPKLYIRVNTLK-ITSDQLFNKYKDIYL 207
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
+ +++ D I KT +I + L K G +QD+++ LV +++P ++D C+A
Sbjct: 208 LEKTNVN-DCLIANKT----IINSDLYKNGFITIQDKASILVSQILNPSLNTKVLDMCSA 262
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNET-AKLHQVNSVIRTIHADLRTFADNST 402
PGGK +++ L G + A +IN+ +++++ E +L+ +N I I+ D R
Sbjct: 263 PGGKLTHLSMILKNTGNIVANEINESKIKLIKENITRLNCLN--ISVINMDARKIKQRQ- 319
Query: 403 VKCDKVLLDAPCSGLGVLSK 422
+ D +LLDAPCSG GV +
Sbjct: 320 -EFDYILLDAPCSGFGVFKR 338
>gi|312134888|ref|YP_004002226.1| sun protein [Caldicellulosiruptor owensensis OL]
gi|311774939|gb|ADQ04426.1| sun protein [Caldicellulosiruptor owensensis OL]
Length = 423
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 92/325 (28%), Positives = 162/325 (49%), Gaps = 18/325 (5%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F K +++D L ++V G +R++ +D+ I + + +L ILR+ YE+
Sbjct: 21 FHQKLKNEKDRALFVELVHGVLRYKNLIDYYINFVTKK----GVKDKRILNILRVATYEL 76
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ L+ +P YA V+E +A + P VN ILR ++ K+ L +++ D
Sbjct: 77 LFLEKIPEYATVNEACEVAS-KISPHLKAFVNAILRNIIRNKNQIEESLERIKEIDLKSY 135
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD-LVMQLN 279
++ S+P +++ + G E+A+K++ + N+ P ++ N++K T D LV +L
Sbjct: 136 ISIKL--SYPKFLIDYLEESYGFEKALKILEFLNTRPPVGIKINTKK--TNVDILVQELR 191
Query: 280 LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAV--VDPQPGQSI 337
V +E++ H E I + G N+ L K+G QD ++ LVV + D + + +
Sbjct: 192 KSGVEYEVNSHNSEIIYILKG--NIKDTQLYKQGYFYFQDLASSLVVGLNKEDFKKAKKV 249
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397
+D CAAPGGKT A + G V A DIN +L +L E +++I +D F
Sbjct: 250 LDLCAAPGGKTFNCAEVID--GFVVACDINDHKLDVLRENILRLGFDNII-VAKSDAEIF 306
Query: 398 ADNSTVKCDKVLLDAPCSGLGVLSK 422
+ + D V+ D PC+G G + K
Sbjct: 307 NPDFAGRFDIVIADLPCTGFGAIRK 331
>gi|326803898|ref|YP_004321716.1| ribosomal RNA small subunit methyltransferase B [Aerococcus urinae
ACS-120-V-Col10a]
gi|326650964|gb|AEA01147.1| ribosomal RNA small subunit methyltransferase B [Aerococcus urinae
ACS-120-V-Col10a]
Length = 470
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 153/322 (47%), Gaps = 18/322 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
++D D L T +V G++++ L L+ + K + + LL +L + Y+ LD
Sbjct: 54 VEDSDRDLYTRLVYGSLQFHWTLQELLKQVL---KLYKRTKKWLLALLELSAYQHYYLDA 110
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+VDE VR+AK G NG LR L P +E QA A
Sbjct: 111 VPDHAIVDEAVRIAKKRGNQTMGRFTNGTLRNLFRT-------YPTIEDFISQQAGDQAY 163
Query: 226 IYSHPVWMVRRWTKYLGQE---EAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQ-LNLL 281
+ S + W KY Q E + + +P+ SR D + Q L
Sbjct: 164 VLSLETSLPLDWVKYFTQRFGFETTQQIAQAMVEPAQVNVRISRDYWQDQDKISQSLADQ 223
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
P++ S ++VKTG N Q+ L ++G+ +QDE+A L V +++P+ G ++D C
Sbjct: 224 GFPNQSSQIAPHQLKVKTG--NPAQSELFEKGVITIQDEAASLAVDILNPKAGDRVLDAC 281
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401
AAPGGKT+ +A + G V A DI + +L ++ + K V+S + D +
Sbjct: 282 AAPGGKTVQLAEYVGKTGQVLAFDIAENKLPLIADNVKRMHVDSQVSIQQGDASQLGEKF 341
Query: 402 TVKC-DKVLLDAPCSGLGVLSK 422
+ D +L+DAPCSG+G+ +
Sbjct: 342 PAESFDGILVDAPCSGVGLFRR 363
>gi|315658498|ref|ZP_07911370.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
lugdunensis M23590]
gi|315496827|gb|EFU85150.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
lugdunensis M23590]
Length = 435
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 94/318 (29%), Positives = 161/318 (50%), Gaps = 20/318 (6%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
++DL D L T++V GTI+ + LD+ + + ++ + Q+L + Y+ V
Sbjct: 33 SQDLSAVDKGLYTELVYGTIKRKFTLDYYLRPFVQ-----TKIKGWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
LD +P +A+++E V +AK P GN+VN ILR+++ LP ++ + R
Sbjct: 88 LDKVPNHAIINEAVEIAKHRGGPHNGNIVNAILRQIM------RSDLPNVDDITDEKKR- 140
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
++ YS P W+V W + G + ++ + ++RAN K D++ L +
Sbjct: 141 MSIAYSLPKWIVDHWVTHYGLAQTHRIGQALLTPTETTVRANIVKASIN-DIIYALE--Q 197
Query: 283 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
+ ++ D + + VI+A KEGL ++QD+S+ V + + Q ++D C+
Sbjct: 198 DGYTVTKDSDILSCLHIQGRPVIEARAFKEGLISIQDKSSMFVAQLANLQAHDKVLDACS 257
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402
APGGK +MA L+ G V A DI+ ++ ++ K +N+V HA T
Sbjct: 258 APGGKACHMAEILAPTGSVDATDIHAHKINLIKYNIKKLGLNNV----HAFQHDATQPYT 313
Query: 403 VKCDKVLLDAPCSGLGVL 420
DK+L+DAPCSGLGVL
Sbjct: 314 EMYDKILVDAPCSGLGVL 331
>gi|314933391|ref|ZP_07840756.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
caprae C87]
gi|313653541|gb|EFS17298.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
caprae C87]
Length = 435
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 99/353 (28%), Positives = 176/353 (49%), Gaps = 38/353 (10%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVKLD- 165
D D L T++V GTI+ + LD+++ K F + ++ + Q+L + Y+ V LD
Sbjct: 38 DVDRNLFTELVYGTIKRKYTLDYIL-------KPFVKTKIKGWVRQLLWMSIYQYVYLDK 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+++E V +AK GN+VNGILR L+ LP + R + +A
Sbjct: 91 VPDHAIINEAVDIAKQRGGHHNGNIVNGILRSLM------RSDLPDFQ-EIRDDKKRIAI 143
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
YS P W+V W + G E+ ++ + ++RAN +G + D+V +L
Sbjct: 144 EYSLPKWLVNHWVTHHGLEKTEEIAQSLLAPVKSTVRANISRG-SVDDIVTKLE----NE 198
Query: 286 ELSLHLDEFIR--VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
++ D+ + + Q ++ + K+G ++QD+S+ +V ++ ++D C+A
Sbjct: 199 GFNVEKDDILPFCLHVSGQTIVNSRAFKDGYVSIQDKSSMMVAHIMKLGRDDKVLDACSA 258
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403
PGGK +MA LS +G V A DI+ ++ ++ K ++++ IHA +
Sbjct: 259 PGGKACHMAEILSPEGQVDATDIHLHKIDLIQHNIKKLKLDN----IHAFQHDATEPYKE 314
Query: 404 KCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
DK+L+DAPCSGLGVL R ++Y +T +Q L + + +L
Sbjct: 315 MYDKILVDAPCSGLGVL----------RHKPEIKYTQTQDSIQSLVDLQLQIL 357
>gi|359403639|ref|ZP_09196543.1| putative rRNA small subunit methyltransferase B [Spiroplasma
melliferum KC3]
gi|438119635|ref|ZP_20871755.1| RNA-binding Sun protein [Spiroplasma melliferum IPMB4A]
gi|358832870|gb|EHK51974.1| putative rRNA small subunit methyltransferase B [Spiroplasma
melliferum KC3]
gi|434155383|gb|ELL44336.1| RNA-binding Sun protein [Spiroplasma melliferum IPMB4A]
Length = 423
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 167/321 (52%), Gaps = 21/321 (6%)
Query: 103 RTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIV 162
+ + D+D L+ IV GT++ + YL+++ +KT ++ LL + Y+
Sbjct: 31 QNDNFTDQDKTLIYRIVYGTLKNKLYLEYIANQFIESKKTNQKLQVLLW----MSIYQFR 86
Query: 163 KLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
LD +P YA+V+E V ++K ++ P +N L+K+ KD E N + +
Sbjct: 87 FLDRIPNYAIVNEAVNISK-SVSPKYAGFINATLKKIFDSKD------EIFEINIADETK 139
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
L+ YS P + ++ A ++M+ + + P S R N+ K ++R +L+ + +
Sbjct: 140 KLSIKYSFPSSLYLILRNEYSEDIARQVMIDSLTIPKLSFRVNTLK-ISRDELLSKYS-- 196
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
+ L+ L + V + V+ + + K+GL +QDE + + ++DPQ ++D C
Sbjct: 197 --NYNLTKSLVSSVGV-IADKPVVNSEMFKKGLIFIQDEMSMRIAEILDPQETDRVLDMC 253
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401
+APGGK +++ ++ +G++ A DI++ ++ ++ A + ++ + D R NS
Sbjct: 254 SAPGGKATHLSQIMNNKGIIDAYDISEKKINLIKMNASRLGITNIYPHL-LDARKI--NS 310
Query: 402 TVKCDKVLLDAPCSGLGVLSK 422
++ DK+L DAPCSGLGV+ +
Sbjct: 311 EIQYDKILCDAPCSGLGVIKR 331
>gi|347542352|ref|YP_004856988.1| ribosomal RNA small subunit methyltransferase B [Candidatus
Arthromitus sp. SFB-rat-Yit]
gi|346985387|dbj|BAK81062.1| ribosomal RNA small subunit methyltransferase B [Candidatus
Arthromitus sp. SFB-rat-Yit]
Length = 435
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 99/324 (30%), Positives = 163/324 (50%), Gaps = 34/324 (10%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH--DEKTFSSMEPLLLQILRIGFYEIVK 163
DL D +LVT+IV GTIR++ +D ++ D+ S++ ILR Y++
Sbjct: 35 DLKYIDKKLVTEIVYGTIRYKLTIDGILSKFVKKLDQNDISTI------ILRSAIYQLKY 88
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
LD +P Y+V++E+V +AK R +G VNG+LR + K ++G
Sbjct: 89 LDKIPEYSVLNESVEVAKKLCRNKSG-FVNGVLRSYLRNK-------KLIDG----YKNT 136
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
L YS WM++ + + I LM N R NS K +++ D + K
Sbjct: 137 LQYEYSFSSWMIKLFKDQYSKN-YISLMEALNKRSETCYRVNS-KIISKKDFIE-----K 189
Query: 283 VPHELSLH-LDEF---IRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 338
E + +D F I++K+ L N+ Q+ L K +VQ S+ + +++P I+
Sbjct: 190 FGDEFKIEDIDGFKNAIKIKS-LINISQSELYKNSFISVQGLSSQVACEILNPIEDDVII 248
Query: 339 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398
D CAAPGGK+ Y+A + + + D+ R+ ++ +A+ ++NS+ I+ D
Sbjct: 249 DLCAAPGGKSTYIAELSKDKCKIISCDVYDHRIELIKNSARRLKLNSIDYFIN-DATILN 307
Query: 399 DNSTVKCDKVLLDAPCSGLGVLSK 422
+ K DKVL+DAPCSGLGV++K
Sbjct: 308 EKFIDKADKVLVDAPCSGLGVINK 331
>gi|416847424|ref|ZP_11907146.1| RNA-binding protein [Staphylococcus aureus O46]
gi|323442308|gb|EGA99938.1| RNA-binding protein [Staphylococcus aureus O46]
Length = 435
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 99/324 (30%), Positives = 163/324 (50%), Gaps = 36/324 (11%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNVMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + Q
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIV---------DQK 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQ 277
+ +A YS P W++ W + G EE ++ S ++RAN +TRA D++ +
Sbjct: 139 KRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTSTTVRAN----LTRASLDDIIEK 194
Query: 278 LNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 337
L E L I + G Q +I + K+G ++QD+S+ V +++ +
Sbjct: 195 LQDEGYDVEKDHDLPYCIHI--GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHV 252
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTIHADLRT 396
+D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+ D
Sbjct: 253 LDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAFQHDATK 310
Query: 397 FADNSTVKCDKVLLDAPCSGLGVL 420
D + DK+L+DAPCSGLGV+
Sbjct: 311 PYDKT---YDKILVDAPCSGLGVM 331
>gi|229140511|ref|ZP_04269066.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus
BDRD-ST26]
gi|228643072|gb|EEK99348.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus
BDRD-ST26]
Length = 360
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 134/258 (51%), Gaps = 12/258 (4%)
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P A + E V +AK G +VNG+LR + +P E D + A+AT
Sbjct: 7 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI----QREGVPSVD-EIKDPVERLAIAT 61
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
SHP+W+V+ WT G E A K+ N P + R N K +T + L +
Sbjct: 62 --SHPIWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDK-ITVEGAIALLASEGIEA 118
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ D+ I+++ G NV K+G ++QDES+ LV ++P G ++D CAAPG
Sbjct: 119 KRGDLSDDAIQIEKG--NVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVVLDSCAAPG 176
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STVK 404
GKT ++A L G G V ++D++ ++R++ + A+ + +V T D R ++ +
Sbjct: 177 GKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLGNV-ETKALDARKVQEHFANET 235
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 236 FDKILVDAPCSGFGVIRR 253
>gi|418993833|ref|ZP_13541470.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG290]
gi|377746992|gb|EHT70962.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG290]
Length = 431
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 100/330 (30%), Positives = 167/330 (50%), Gaps = 48/330 (14%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 31 ELNAMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 83
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 84 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNKIADPK--------- 134
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQ 277
+ +A YS P W++ W + G E ++ S ++RAN +TRA D++ +
Sbjct: 135 KRMAIEYSMPKWIIDHWATHYGLEGTETILQSFLETTSTTVRAN----LTRASLDDIIEK 190
Query: 278 LNL----LKVPHELS--LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
L ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 191 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 242
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 390
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 243 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAF 300
Query: 391 HADLRTFADNSTVKCDKVLLDAPCSGLGVL 420
D D + DK+L+DAPCSGLGV+
Sbjct: 301 QHDATKPYDKT---YDKILVDAPCSGLGVM 327
>gi|416839261|ref|ZP_11902655.1| RNA-binding protein [Staphylococcus aureus O11]
gi|323440992|gb|EGA98699.1| RNA-binding protein [Staphylococcus aureus O11]
Length = 435
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 99/324 (30%), Positives = 163/324 (50%), Gaps = 36/324 (11%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNVMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + Q
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIV---------DQK 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQ 277
+ +A YS P W++ W + G EE ++ S ++RAN +TRA D++ +
Sbjct: 139 KRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTSTTVRAN----LTRASLDDIIEK 194
Query: 278 LNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 337
L E L I + G Q +I + K+G ++QD+S+ V +++ +
Sbjct: 195 LQDEGYDVEKDHDLPYCIHI--GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHV 252
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTIHADLRT 396
+D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+ D
Sbjct: 253 LDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAFQHDATK 310
Query: 397 FADNSTVKCDKVLLDAPCSGLGVL 420
D + DK+L+DAPCSGLGV+
Sbjct: 311 PYDKT---YDKILVDAPCSGLGVM 331
>gi|406659599|ref|ZP_11067737.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
iniae 9117]
gi|405577708|gb|EKB51856.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
iniae 9117]
Length = 440
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 101/326 (30%), Positives = 160/326 (49%), Gaps = 37/326 (11%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L +D +T+IV GTI + L+ + + D ++ + +L + Y++V LD
Sbjct: 40 LSPKDKGFITEIVYGTISRKITLEWYLSHVVTDR---DKLDKWVYYLLMLSLYQLVYLDK 96
Query: 166 MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A+V+E V +AK + GA VN ILR+L + LP E R Q + +
Sbjct: 97 VPKHAIVNEAVNIAKNRGNKRGAEKYVNAILRQLT------ASDLPDYETIKR-QNKRYS 149
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
YS P W+V++ G+ A+ +M SL S+ + D + L+++
Sbjct: 150 IKYSLPTWLVKKLMDQFGETRALAIME--------SLLETSKASIRVTD---ENRLMEIK 198
Query: 285 HELSLHLDEFIRVKTGLQ----NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
L E + GL N + G +QDES+ LV + + + I+D
Sbjct: 199 EALGAQ--ESVISPLGLTKTSANFATSDYFTSGAITIQDESSQLVAPTLQIEGHEHILDA 256
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR----T 396
C+APGGKTL+MAS LS G V A+DI + +L ++ E AK + I T D R T
Sbjct: 257 CSAPGGKTLHMASYLSS-GRVTALDIYQHKLDLVKENAKRLGLTDKIETRQLDARKVNQT 315
Query: 397 FADNSTVKCDKVLLDAPCSGLGVLSK 422
F +S DK+L+DAPCSG+G++ +
Sbjct: 316 FPADS---FDKILVDAPCSGIGLMRR 338
>gi|256958399|ref|ZP_05562570.1| fmu family protein [Enterococcus faecalis DS5]
gi|257078290|ref|ZP_05572651.1| fmu [Enterococcus faecalis JH1]
gi|294779981|ref|ZP_06745361.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis PC1.1]
gi|307270563|ref|ZP_07551861.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX4248]
gi|397701267|ref|YP_006539055.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis D32]
gi|422711158|ref|ZP_16768091.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0027]
gi|256948895|gb|EEU65527.1| fmu family protein [Enterococcus faecalis DS5]
gi|256986320|gb|EEU73622.1| fmu [Enterococcus faecalis JH1]
gi|294452962|gb|EFG21384.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis PC1.1]
gi|306513144|gb|EFM81778.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX4248]
gi|315034823|gb|EFT46755.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0027]
gi|397337906|gb|AFO45578.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis D32]
Length = 459
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 112/401 (27%), Positives = 197/401 (49%), Gaps = 45/401 (11%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ + R+ GGA+++LL NEM +L ++D RL T++V
Sbjct: 14 RYVALETIERVDKGGAYSNLLL--------NEM--------MTKSELSEKDGRLFTELVY 57
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI + L++ + K ++ + +L + Y+++ LD +P +AV++E V +
Sbjct: 58 GTISRKLLLEYYLTPFV---KKPQKVDNWVRNLLILSLYQLLYLDKVPDHAVINEAVEIG 114
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGN-DRAQARALATIYSHPVWMVRRWT 238
K PG G VNG+LR + N + L + + DR LAT S P W+ +
Sbjct: 115 KRRGNPGIGKFVNGVLRAF---QRNGAPSLAAISDSVDR-----LATEISMPRWLTEKLL 166
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVK 298
LG+EE +L + S R N+R ++R + + +L + + S + +
Sbjct: 167 AQLGEEETRQLGLSLFEKSHASGRVNTR-FISREEALEELQETGIAAKESQLSPYGVVAE 225
Query: 299 TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 358
G + + L G +QDES+ LV + +P ++D CAAPGGKT ++A+ L +
Sbjct: 226 KGY--LAGSELFINGCLTIQDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAE 283
Query: 359 --GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAPCS 415
G V ++DI+ +++++NE A+ V V++ D R A+ + D++L+DAPCS
Sbjct: 284 AGGRVTSLDIHAHKIKLINENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAPCS 343
Query: 416 GLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
GLG++ R ++Y KT+ Q+L + + +L
Sbjct: 344 GLGLM----------RRKPDIKYHKTANDFQNLPKIQLEIL 374
>gi|223940862|ref|ZP_03632690.1| sun protein [bacterium Ellin514]
gi|223890472|gb|EEF57005.1| sun protein [bacterium Ellin514]
Length = 444
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 102/327 (31%), Positives = 154/327 (47%), Gaps = 39/327 (11%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME-PLLLQILRIGFYEIVKLD-MPP 168
D L ++V G +RW+ L+ LI D KT + P + +L++G Y++ LD +P
Sbjct: 50 DRGLCQELVYGIVRWQETLNWLI-----DRKTEGRRQKPEMQVLLQLGLYQMFWLDRIPN 104
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLK-DNNSLPLPKLEGNDRAQARALATIY 227
+A V E V +AK VN +LR + + + L LE AQ + Y
Sbjct: 105 HAAVHETVEIAKELGFVAQSGFVNAVLRGYLRERVETEKL----LEEVKIAQPQ---IGY 157
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHEL 287
SHP W+ +RW + G E KLM WNN+ R N+ K + KV +
Sbjct: 158 SHPEWVYQRWLERYGAEHTAKLMEWNNTPARTYARINTLKA----------DAAKVTAQW 207
Query: 288 SLHLDEFIR-----VKTGLQNVIQ-----AGL--LKEGLCAVQDESAGLVVAVVDPQPGQ 335
+FI ++ GL ++ AGL K+G +QD S L V +D +
Sbjct: 208 ETEGVKFIPRQYDWIEDGLIFELESHPPLAGLKSFKDGFFYIQDPSTLLSVRELDVKAAH 267
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
S++D CAAPGGKT +A + +G + A DI+ RL +L E V V+ +I +
Sbjct: 268 SVLDLCAAPGGKTTMIAQQMQNRGQIVAQDISDDRLALLRENYVRLGVTCVVASIAPN-- 325
Query: 396 TFADNSTVKCDKVLLDAPCSGLGVLSK 422
N + D+VL+DAPCS GV+ +
Sbjct: 326 AVIANPAQRFDRVLIDAPCSNTGVMRR 352
>gi|433454201|ref|ZP_20413052.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma sp.
G5847]
gi|431933444|gb|ELK20031.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma sp.
G5847]
Length = 419
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 90/326 (27%), Positives = 161/326 (49%), Gaps = 37/326 (11%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
D+D + V ++V G I + +LD+L+ L +KT ++ +LL IG Y+++ LD
Sbjct: 32 DIDQLEKDFVFNLVHGIISNKIHLDYLLTRLIDLKKTKKELQIILL----IGLYQMIYLD 87
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P YA+V+E V LAK + + N +N IL K + K+ LE N + L
Sbjct: 88 NIPNYAIVNETVNLAK-TINQKSANFINAILNKFLRFKN------KYLEINLDNKDLELC 140
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
I+S + K ++ K+++ N+ P +R N+ K +T L Q
Sbjct: 141 IIHSFSYELYLMLIKQYDKQIVNKIVINNHQIPKLYIRVNTLK-ITTDQLFNQ------- 192
Query: 285 HELSLHLDEFIRVKTGLQN-------VIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 337
+ D ++ KT N +I + L K GL +QD+++ LV +++P +
Sbjct: 193 -----YKDIYLLEKTNTNNCLVANKTIINSDLYKNGLITIQDKASILVSQILNPSLNTKV 247
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHADLRT 396
+D C+APGGK +++ ++ G + ++++ ++R++ E +L+ +N I + D R
Sbjct: 248 LDMCSAPGGKLTHLSMIMNNTGSIIGNELSESKIRLIKENILRLNCLN--ISLTNMDARD 305
Query: 397 FADNSTVKCDKVLLDAPCSGLGVLSK 422
+ D +LLDAPCSG GV +
Sbjct: 306 IKQKQ--EFDYILLDAPCSGFGVFKR 329
>gi|33239874|ref|NP_874816.1| tRNA and rRNA cytosine-C5-methylase [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33237400|gb|AAP99468.1| tRNA and rRNA cytosine-C5-methylase [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 438
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 97/326 (29%), Positives = 158/326 (48%), Gaps = 13/326 (3%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
FR L D L T++ G IR R LD I C + + PLL +L +G Y+I
Sbjct: 33 FRKYSLSIADRALATELACGAIRQRLVLDCWID--CLAKVSAEKQPPLLRWLLHVGLYQI 90
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL-EGNDRAQ 219
+D +P A V+ V LAK +VN ILR+ + +D LP L E DR
Sbjct: 91 FYMDRIPVSAAVNTTVELAKKKNLKSLAPVVNAILREAIRARDLGK-ELPGLIEPQDR-- 147
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
L+ +S P W+ ++ G++ A + N P+ LR NS++ ++ L +
Sbjct: 148 ---LSLKHSIPTWLAYELIEWKGEKGAEIIAKAFNQAPAIDLRVNSKRSSVKS-LRQKFQ 203
Query: 280 LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 339
+ +L + V +G ++ Q ++G +VQD SA VV +++P+ G+ ++D
Sbjct: 204 DSGIESKLIETCPYGLTVTSGAGDLRQWPGYEQGEWSVQDRSAQWVVPLLEPRSGEVVLD 263
Query: 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLR--ILNETAKLHQVNSVIRTIHADLRTF 397
C+APGGKT ++A ++ G ++A+D + RL+ LN H + +L
Sbjct: 264 ACSAPGGKTTHLAELMNDIGEIWAVDRSPKRLQKVSLNAARLGHHCIKFLSADATNLIEL 323
Query: 398 ADNSTVKCDKVLLDAPCSGLGVLSKT 423
+ +K+LLD PCSGLG L++
Sbjct: 324 KPSWKGYFNKILLDVPCSGLGTLARN 349
>gi|42519411|ref|NP_965341.1| SUN protein [Lactobacillus johnsonii NCC 533]
gi|41583699|gb|AAS09307.1| SUN protein [Lactobacillus johnsonii NCC 533]
Length = 438
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 99/327 (30%), Positives = 168/327 (51%), Gaps = 36/327 (11%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
DL D L T IV GTI+++ +L++ + L + S ++PLLL + Y+ L+
Sbjct: 34 DLKPADKALATRIVYGTIQYKIFLEYQLKPLIKTKLRDSFLKPLLL----MSAYQYFFLE 89
Query: 166 -MPPYAVVDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
+P A+ DE +LAK + +G+ L+NGILR L + LP ND +
Sbjct: 90 KVPANAIFDEANKLAKKYSKRNSGSYKLINGILR--ALERQGEILP----PTNDLVEY-- 141
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKG--------VTRADL 274
L+ S P W+V + G+ + +++V +N + S+R +++ + + +
Sbjct: 142 LSIKESFPKWLVEYLLDHFGENKTKEILVRSNQPAANSIRMTTKESDFEEIKEELKKDNF 201
Query: 275 VMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 334
+ + L PH L+L+ K G V Q L K G +QD +A L V +
Sbjct: 202 SFEESSL-TPHNLNLN-------KGG---VAQTALFKNGKITIQDAAASLAVDAFYFKGS 250
Query: 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 394
+ ++D C+APGGKT+ +A L+ G V A+DI++ +LR++ A+ V+ +RT D
Sbjct: 251 EQVLDACSAPGGKTVQIAENLT-TGSVIALDIHENKLRLVRNAAERLHVSDKVRTKALDA 309
Query: 395 RTFADN-STVKCDKVLLDAPCSGLGVL 420
R + + + DK+L+DAPCSGLG++
Sbjct: 310 RKAKEYFNQGQFDKILVDAPCSGLGLI 336
>gi|258423740|ref|ZP_05686626.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A9635]
gi|418283099|ref|ZP_12895856.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21202]
gi|418306692|ref|ZP_12918467.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21194]
gi|418559078|ref|ZP_13123624.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21252]
gi|418889008|ref|ZP_13443144.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1524]
gi|257845972|gb|EEV70000.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A9635]
gi|365168696|gb|EHM60034.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21202]
gi|365246408|gb|EHM86962.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21194]
gi|371975369|gb|EHO92663.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21252]
gi|377754518|gb|EHT78427.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1524]
Length = 435
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 100/330 (30%), Positives = 167/330 (50%), Gaps = 48/330 (14%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNAMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNKIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQ 277
+ +A YS P W++ W + G E ++ S ++RAN +TRA D++ +
Sbjct: 139 KRMAIEYSMPKWIIDHWATHYGLEGTETILQSFLETTSTTVRAN----LTRASLDDIIEK 194
Query: 278 LNL----LKVPHELS--LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
L ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTI 390
++D C+APGGK ++A L +G V A DI+ ++ ++N KL N I+
Sbjct: 247 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTN--IKAF 304
Query: 391 HADLRTFADNSTVKCDKVLLDAPCSGLGVL 420
D D + DK+L+DAPCSGLGV+
Sbjct: 305 QHDATKPYDKT---YDKILVDAPCSGLGVM 331
>gi|406669288|ref|ZP_11076568.1| ribosomal RNA small subunit methyltransferase B [Facklamia ignava
CCUG 37419]
gi|405584085|gb|EKB58011.1| ribosomal RNA small subunit methyltransferase B [Facklamia ignava
CCUG 37419]
Length = 453
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 98/337 (29%), Positives = 172/337 (51%), Gaps = 20/337 (5%)
Query: 90 DNEMGYVERTL-GFRT-KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
+NE GY + F T + D RD L+T +V G ++ R LD + L ++K ++
Sbjct: 27 ENEGGYSNVLIDAFMTDSEFDSRDKALLTRVVYGVLQHRMTLDFSLDSLLQNKK----VD 82
Query: 148 PLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
+ +LR+ Y++ LD +P +AVV+E V +AK G G VN +LR+ ++ ++S
Sbjct: 83 LWVKTLLRLSIYQLCYLDRIPAHAVVNEAVLIAKTNGHAGLGKFVNWVLREF--MRQSSS 140
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
+ + ++E L+ YS P WMV + Y E+ ++ N P + R N +
Sbjct: 141 V-VEEIED----PVERLSIEYSLPKWMVEYFQSYRTSEKLEAMLSSLNETPKLTARVNLK 195
Query: 267 KGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVV 326
+ + R + + +L + E S I + + V+Q+ L ++GL +QDES+ LV
Sbjct: 196 R-MDREEAIARLKEQGIDAEASTLSPAGIILHSP--QVLQSSLFQDGLITIQDESSMLVA 252
Query: 327 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRL-RILNETAKLHQVNS 385
V D Q + I+D C APGGK ++AS L+ G + A+DI+ ++ ++ +++ ++
Sbjct: 253 PVGDIQGDEQILDACCAPGGKATHIASLLTD-GHLTALDISADKMNKVAQHMERMNLIDK 311
Query: 386 VIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
V + D F D + LD PCSGLG++ +
Sbjct: 312 VNLKV-TDALQFHPKKDTFYDIIYLDVPCSGLGIMRR 347
>gi|386728897|ref|YP_006195280.1| 16S rRNA m(5)C 967 methyltransferase [Staphylococcus aureus subsp.
aureus 71193]
gi|387602491|ref|YP_005734012.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus ST398]
gi|404478556|ref|YP_006709986.1| hypothetical protein C248_1247 [Staphylococcus aureus 08BA02176]
gi|418309667|ref|ZP_12921218.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21331]
gi|283470429|emb|CAQ49640.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus ST398]
gi|365237790|gb|EHM78629.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21331]
gi|384230190|gb|AFH69437.1| 16S rRNA m(5)C 967 methyltransferase [Staphylococcus aureus subsp.
aureus 71193]
gi|404440045|gb|AFR73238.1| hypothetical protein C248_1247 [Staphylococcus aureus 08BA02176]
Length = 435
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 96/329 (29%), Positives = 167/329 (50%), Gaps = 46/329 (13%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNAMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQ 277
+ +A YS P W++ W + G E ++ S ++RAN +TRA D++ +
Sbjct: 139 KRMAIEYSMPKWIIDHWATHYGLEGTETILQSFLETTSTTVRAN----LTRASLDDIIEK 194
Query: 278 LNL----LKVPHELS--LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
L ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
++D C+APGGK ++A L +G V A DI+ ++ ++N K ++ ++ H
Sbjct: 247 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTNIKAFKH 306
Query: 392 ADLRTFADNSTVKCDKVLLDAPCSGLGVL 420
+ + DK+L+DAPCSGLGV+
Sbjct: 307 DATKPYDKT----YDKILVDAPCSGLGVM 331
>gi|418978541|ref|ZP_13526341.1| 16S rRNA m(5)C 967 methyltransferase [Staphylococcus aureus subsp.
aureus DR10]
gi|379993365|gb|EIA14811.1| 16S rRNA m(5)C 967 methyltransferase [Staphylococcus aureus subsp.
aureus DR10]
Length = 435
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 96/329 (29%), Positives = 167/329 (50%), Gaps = 46/329 (13%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVK 163
+L+ D L T+IV GT++ + LD + K F + ++ + Q+L + Y+ V
Sbjct: 35 ELNAMDKALFTEIVYGTVKRKYTLDFYL-------KPFVKTKIKAWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQA 220
LD +P +A+++E V +AK GN+VNGILR ++ L D N + PK
Sbjct: 88 LDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPK--------- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQ 277
+ +A YS P W++ W + G E ++ S ++RAN +TRA D++ +
Sbjct: 139 KRMAIEYSMPKWIIDHWATHYGLEGTETILQSFLETTSTTVRAN----LTRASLDDIIEK 194
Query: 278 LNL----LKVPHELS--LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDP 331
L ++ H+L LH+ G Q +I + K+G ++QD+S+ V +++
Sbjct: 195 LQDEGYDVEKDHDLPYCLHI--------GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNV 246
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
++D C+APGGK ++A L +G V A DI+ ++ ++N K ++ ++ H
Sbjct: 247 DRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKLRLTNIKAFKH 306
Query: 392 ADLRTFADNSTVKCDKVLLDAPCSGLGVL 420
+ + DK+L+DAPCSGLGV+
Sbjct: 307 DATKPYDKT----YDKILVDAPCSGLGVM 331
>gi|296327374|ref|ZP_06869923.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
gi|296155489|gb|EFG96257.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
Length = 435
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 154/321 (47%), Gaps = 20/321 (6%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F+T +++ ++ +T+I G IR +++LD++I ++ T + + +LRI Y+I
Sbjct: 28 FKTLNVNSKEKAFITEIFYGVIRNKKFLDYII-----EKNTKEIKKEWIRNLLRISIYQI 82
Query: 162 VKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
+D VV E LAK +NG LR + KD L L +L+ +
Sbjct: 83 TFMDSDDKGVVWEGTELAKKKYGIPISKFINGTLRNYLRNKD---LELKRLD-----DEK 134
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
+YS P W K G E + + P S+R N K ++ + L
Sbjct: 135 NYEVLYSIPKWFYNTLEKQYGNENLKQAITSLKKIPYLSVRVNKLK---YSEEEFEEFLK 191
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
+ ++ +D V +GL +I + K G QD S+ L +D P + ++D C
Sbjct: 192 EKDIQIIKKVDTVYYVNSGL--IINSEEFKTGKIIAQDASSYLAAKNLDAMPNELVLDIC 249
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401
AAPGGKT +A + G + AIDI++ ++++++ K +++ +++ I D R +
Sbjct: 250 AAPGGKTAVLAENMKNMGEIIAIDIHQHKIKLIDTNMKKLRID-IVKAIVMDARN-VNKQ 307
Query: 402 TVKCDKVLLDAPCSGLGVLSK 422
K DK+L+D PCSG GV+ K
Sbjct: 308 GRKFDKILVDVPCSGYGVIRK 328
>gi|241895667|ref|ZP_04782963.1| RNA methyltransferase [Weissella paramesenteroides ATCC 33313]
gi|241871034|gb|EER74785.1| RNA methyltransferase [Weissella paramesenteroides ATCC 33313]
Length = 456
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 108/380 (28%), Positives = 187/380 (49%), Gaps = 48/380 (12%)
Query: 54 NLEVSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLR 113
N E++ RA+S L ++Q GA+++L + + DL ++++
Sbjct: 11 NWELTNPRALSVRVLEKVQ-NGAYSNL----------------QLDSMIKQADLSEKNVH 53
Query: 114 LVTDIVGGTIRWRRYLDH-LICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAV 171
L+T +V G I+ R L++ LI + +K +E + ++L I +++ LD +P +A+
Sbjct: 54 LMTTMVYGVIQHRLTLEYWLIPFIKQPQK----LESWVRELLYISIFQMQYLDKIPDHAI 109
Query: 172 VDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPV 231
DE + +AK G V G+L + LP E + + + + L+ S P+
Sbjct: 110 FDEAINIAKRRGHDGTRKFVTGVLHAI------QRQGLPDFE-DIKDETKRLSIKTSLPL 162
Query: 232 WMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN---LLKVPHELS 288
W++ LG + + + N+ PS S+R N R+ ++ DL+ L P E++
Sbjct: 163 WLIETLNGQLGWPKTVSIASTINAAPSQSVRVN-RELISPTDLIKLLENDGYQVTPSEVT 221
Query: 289 LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKT 348
+ + V G +V + +GL +QDESA L+V +D PG ++D AAPGGKT
Sbjct: 222 ---PDALLVSGG--HVAGSQAFHDGLLTLQDESAMLMVPSLDVHPGDKVLDAAAAPGGKT 276
Query: 349 LYMASCL--SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR----TFADNST 402
+A+ L + G V A+DI+ + +++ E A QV I T D R F D +
Sbjct: 277 TQIATYLEKTQGGHVVALDIHDHKAKLIKENATRLQVADRIETQVLDARKVDEKFKDET- 335
Query: 403 VKCDKVLLDAPCSGLGVLSK 422
D++L+DAPCSG G+L +
Sbjct: 336 --FDRILVDAPCSGFGLLRR 353
>gi|194466505|ref|ZP_03072492.1| sun protein [Lactobacillus reuteri 100-23]
gi|194453541|gb|EDX42438.1| sun protein [Lactobacillus reuteri 100-23]
Length = 449
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 170/342 (49%), Gaps = 35/342 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D+D RL T+I+ G ++ + L++ + ++ ++P + +L Y+ L+
Sbjct: 41 LADKDRRLATNIIYGVLQHKLTLEYWLNGFVQGKR----LDPWVKTLLLSALYQYHYLER 96
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +AV DE++ +AK PG V G+L ++ LP L + R L+
Sbjct: 97 VPDWAVTDESIEIAKRRGNPGIRKFVTGVLHAIL------RKGLPDLRQINERDLR-LSI 149
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQ-LNLLKVP 284
S P W+V T+ G+E+ K++ N +R N+ K T V Q L+ +
Sbjct: 150 ENSVPRWLVNELTREYGEEDTEKILQSINEPAHQVIRVNTAK--TDLPTVKQALDAAGIE 207
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
++ S + + G +I + L K G +QDESA L V + +PG ++D CAAP
Sbjct: 208 YQESQVAQNALVITKG--EIISSDLFKNGEITIQDESAMLAVESMHIEPGDKVLDACAAP 265
Query: 345 GGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA----DLRTFAD 399
GGKT+ +A L+ + G V A+DI++ ++R++ + A+ V + T HA ++ D
Sbjct: 266 GGKTVQIAEALADEDGHVDALDIHQHKVRLIEKNARRLGVEKRV-TAHALNAREVDQLFD 324
Query: 400 NSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKT 441
+ DK+L+DAPCSG+G+L + +RY KT
Sbjct: 325 DENF--DKILVDAPCSGIGLLRRK----------PEIRYTKT 354
>gi|389852328|ref|YP_006354562.1| nol1-nop2-sun family nucleolar protein II [Pyrococcus sp. ST04]
gi|388249634|gb|AFK22487.1| nol1-nop2-sun family nucleolar protein II [Pyrococcus sp. ST04]
Length = 432
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 85/303 (28%), Positives = 144/303 (47%), Gaps = 26/303 (8%)
Query: 124 RWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVAL 183
+WR +D +I + ++ L +LRIG +E+ + P D VR+ K
Sbjct: 42 KWRAKIDFIINSVLKGS-NIEDLDLYLANLLRIGTFEMKFKGVNPAIATDSVVRVVKDKF 100
Query: 184 RPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQ 243
N +LR++ N L KL+ DR + L+ +SHP W V LG
Sbjct: 101 DLARAKFANAVLREVERF--NVEKALRKLKEKDRIEW--LSVRFSHPRWYVEYIIDVLGY 156
Query: 244 EEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLH--------LDEFI 295
+EA++L++ N + +R N+ ++ ++ KV L H +D+ +
Sbjct: 157 DEAVRLLLSNLRPQRYYIRVNT----------LKTDIDKVKKYLEEHGVRVALTPVDDVL 206
Query: 296 RVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL 355
+V + + ++G +QD ++ V V+ P+PG ++D AAPG KT + A+ +
Sbjct: 207 KVLEYDTPITRLEWYRKGYFVIQDLASAYVAHVLSPEPGDRVLDLAAAPGSKTFHAAALM 266
Query: 356 SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCS 415
+G + A+D + RL + E K V +V R +HAD ++F D K DK++LDAPCS
Sbjct: 267 ENKGEIVAVDYSYDRLMKMKERMKRLGVKNV-RLVHADGQSFFDKE--KFDKIILDAPCS 323
Query: 416 GLG 418
G
Sbjct: 324 SSG 326
>gi|293380312|ref|ZP_06626386.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
crispatus 214-1]
gi|295693192|ref|YP_003601802.1| sun protein [Lactobacillus crispatus ST1]
gi|290923127|gb|EFE00056.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
crispatus 214-1]
gi|295031298|emb|CBL50777.1| SUN protein [Lactobacillus crispatus ST1]
Length = 441
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 119/407 (29%), Positives = 197/407 (48%), Gaps = 61/407 (14%)
Query: 61 RAVSAVRLMRIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIV 119
RAVS L+++ G+++++ LN K S +L D L T+IV
Sbjct: 8 RAVSLETLIKVLDQGSYSNISLNNSLKHS-----------------NLSIADQNLATNIV 50
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRL 178
GTI++R +L++ + L + T ++PLLL + Y+++ LD +P AV+DE +L
Sbjct: 51 YGTIQYRLFLEYQLKGLVRTKLTEKYIKPLLL----MSLYQLIFLDKVPDRAVLDEANKL 106
Query: 179 AK-VALRPGAG-NLVNGILRKL-----VLLKDNNSLPLPKLEGNDRAQARALATIYSHPV 231
AK R AG LVNGILR +L +NN + + L+ S P
Sbjct: 107 AKQYGKRHSAGFRLVNGILRSFTRRGVILPAENNPV-------------KYLSVKESVPE 153
Query: 232 WMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV-PHELSLH 290
W+V+ G ++A ++ N S+R + K + + QL P L
Sbjct: 154 WLVQYLIDNWGLDKAKSVLNSINEPAKNSVRIS--KLADKEQVFAQLERDNYQPQWSKLS 211
Query: 291 LDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLY 350
D+ I G+ ++ L +EG +QDE+A LVV D + + ++D C+APGGKT+
Sbjct: 212 SDDVILSHGGIS---ESDLFEEGKLTIQDEAASLVVEAFDFEQDEHVLDACSAPGGKTVQ 268
Query: 351 MASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCDKVL 409
+A + G V A+DI+ +LR++ + A+ V + ++T D R + + + K+L
Sbjct: 269 IAESIVN-GDVTALDIHDKKLRLVRDNAQRMHVANKVKTKACDARKATEIFAAGEFTKIL 327
Query: 410 LDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
+DAPCSGLG+L R +RY K +Q+L + + +L
Sbjct: 328 VDAPCSGLGLL----------RRKPEIRYTKRQQDLQNLQKIQLAIL 364
>gi|256849782|ref|ZP_05555213.1| rRNA methylase [Lactobacillus crispatus MV-1A-US]
gi|262046519|ref|ZP_06019480.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
crispatus MV-3A-US]
gi|312984157|ref|ZP_07791503.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
crispatus CTV-05]
gi|423318407|ref|ZP_17296284.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
crispatus FB049-03]
gi|423322018|ref|ZP_17299889.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
crispatus FB077-07]
gi|256713271|gb|EEU28261.1| rRNA methylase [Lactobacillus crispatus MV-1A-US]
gi|260572968|gb|EEX29527.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
crispatus MV-3A-US]
gi|310894376|gb|EFQ43452.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
crispatus CTV-05]
gi|405591472|gb|EKB64974.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
crispatus FB077-07]
gi|405596131|gb|EKB69488.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
crispatus FB049-03]
Length = 453
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 119/407 (29%), Positives = 197/407 (48%), Gaps = 61/407 (14%)
Query: 61 RAVSAVRLMRIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIV 119
RAVS L+++ G+++++ LN K S +L D L T+IV
Sbjct: 20 RAVSLETLIKVLDQGSYSNISLNNSLKHS-----------------NLSIADQNLATNIV 62
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRL 178
GTI++R +L++ + L + T ++PLLL + Y+++ LD +P AV+DE +L
Sbjct: 63 YGTIQYRLFLEYQLKGLVRTKLTEKYIKPLLL----MSLYQLIFLDKVPDRAVLDEANKL 118
Query: 179 AK-VALRPGAG-NLVNGILRKL-----VLLKDNNSLPLPKLEGNDRAQARALATIYSHPV 231
AK R AG LVNGILR +L +NN + + L+ S P
Sbjct: 119 AKQYGKRHSAGFRLVNGILRSFTRRGVILPAENNPV-------------KYLSVKESVPE 165
Query: 232 WMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV-PHELSLH 290
W+V+ G ++A ++ N S+R + K + + QL P L
Sbjct: 166 WLVQYLIDNWGLDKAKSVLNSINEPAKNSVRIS--KLADKEQVFAQLERDNYQPQWSKLS 223
Query: 291 LDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLY 350
D+ I G+ ++ L +EG +QDE+A LVV D + + ++D C+APGGKT+
Sbjct: 224 SDDVILSHGGIS---ESDLFEEGKLTIQDEAASLVVEAFDFEQDEHVLDACSAPGGKTVQ 280
Query: 351 MASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCDKVL 409
+A + G V A+DI+ +LR++ + A+ V + ++T D R + + + K+L
Sbjct: 281 IAESIVN-GDVTALDIHDKKLRLVRDNAQRMHVANKVKTKACDARKATEIFAAGEFTKIL 339
Query: 410 LDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
+DAPCSGLG+L R +RY K +Q+L + + +L
Sbjct: 340 VDAPCSGLGLL----------RRKPEIRYTKRQQDLQNLQKIQLAIL 376
>gi|335357195|ref|ZP_08549065.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus animalis KCTC
3501]
Length = 449
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 99/332 (29%), Positives = 165/332 (49%), Gaps = 34/332 (10%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ +L RD L+T+IV G I+ + L++ + K + ++ + Q+L Y+
Sbjct: 35 IKQNELTKRDAHLLTNIVYGVIQHKLTLEYYLKPFI---KRPNKLQSWVKQLLLTALYQQ 91
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG-NDRAQ 219
+ LD +P AV +E + +AKV G V GIL + + +P L+ D +
Sbjct: 92 IYLDNIPKRAVFNETIEIAKVKGHAGVRKFVTGILHAI------DRQGIPSLDAITDPIE 145
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR----KGVTRADLV 275
A ++AT S P W+V + K +G + ++ N P ++R N++ + +
Sbjct: 146 ALSIAT--STPRWLVEQLQKEVGTAKTKSILETINQAPKQTVRINTKVTTAEALAAQLEA 203
Query: 276 MQLNLLKVP-HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 334
+L + K P L+L +V TG +A K G VQDESA LVV + G
Sbjct: 204 EKLEVAKSPVTPLAL------QVNTGFIPATEA--FKTGQAIVQDESAMLVVESMAINAG 255
Query: 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 394
++D CAAPGGKT +A+ L G V ++DI+K ++ ++ + A V + ++ + D
Sbjct: 256 DQVLDACAAPGGKTTQIAAQLET-GQVTSLDIHKHKVALIEQNALRAHVEAQVKALQMDA 314
Query: 395 R----TFADNSTVKCDKVLLDAPCSGLGVLSK 422
R FA S DK+L+DAPCSG+G+L +
Sbjct: 315 RKASEEFAKES---FDKILVDAPCSGIGLLRR 343
>gi|295397805|ref|ZP_06807870.1| ribosomal RNA small subunit methyltransferase B [Aerococcus
viridans ATCC 11563]
gi|294973940|gb|EFG49702.1| ribosomal RNA small subunit methyltransferase B [Aerococcus
viridans ATCC 11563]
Length = 482
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 157/324 (48%), Gaps = 22/324 (6%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLI-CLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPP 168
D L T++V G+++ LD + + K S + LL+ + Y++ LD +P
Sbjct: 64 DRNLYTNLVYGSVQNYYTLDAFVRDFVAKPNKVKSWVWSLLI----VSAYQMYYLDNIPN 119
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
YAVVDE VR+ + NG+LR + + + + + R + A++
Sbjct: 120 YAVVDEAVRIVRKRGNQTLAKFANGVLRNFTRRYETMA-DFIQTKEDPREKLTLEASL-- 176
Query: 229 HPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELS 288
PVW V + G +EA KL N P ++RAN++ D + + + S
Sbjct: 177 PPVW-VDYFVDRFGLDEAEKLANSLNQTPFITVRANNKFNNLDNDKMTEYQEILEAEGFS 235
Query: 289 LH---LDEF-IRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
+ L F +RV G N + L G +QDESA L V ++P+PG++++D CAAP
Sbjct: 236 VAPSPLSPFALRVTKG--NPAHSSLFMNGEITIQDESALLAVEALNPKPGETVLDACAAP 293
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD----LRTFADN 400
GGKT+ +A + G V A DI + +L ++ E QV + +H D L F +N
Sbjct: 294 GGKTVQIAEAVGRTGHVIACDIAENKLPLIQENVDRMQVADHVEILHQDATALLDRFGEN 353
Query: 401 ST--VKCDKVLLDAPCSGLGVLSK 422
+ DK+L+DAPCSG+G+ +
Sbjct: 354 GSEPTSFDKILVDAPCSGVGLFRR 377
>gi|199597150|ref|ZP_03210582.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus rhamnosus HN001]
gi|199591954|gb|EDZ00029.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus rhamnosus HN001]
Length = 446
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 100/354 (28%), Positives = 166/354 (46%), Gaps = 28/354 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD RD L+T++V G I+ + LD+L+ + + ++ + +L+ Y++ LD
Sbjct: 37 LDSRDAGLLTNVVYGVIQHQLTLDYLLAPFVKNRQ----LDTWVRCLLQTAVYQLQYLDK 92
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P AV ++ +AK G V G+LR+ + P P + + LA
Sbjct: 93 VPARAVFFDSTEIAKKLGHQGVAKFVTGVLRQ----AQRSGYPDPMTIADP---IQRLAI 145
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
S PVW+V++ LG+ + K++ N S+R N+ K A L
Sbjct: 146 TSSTPVWLVKKLQAQLGETKTAKILAAINQPAHASIRVNTTKTTAAALLKALQLQFPALK 205
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
E L + L + +GL +QDES+ LV +D QPG ++D CAAPG
Sbjct: 206 ESPLTPVGLVAPGGHLAGTRE---FADGLYTMQDESSMLVAPSLDVQPGDQVLDACAAPG 262
Query: 346 GKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403
GKT ++A L G V A+D++ ++R++ + AK ++ + D R A N
Sbjct: 263 GKTTHIAQYLDPDQGGRVTALDLHANKVRLIQQNAKRLDLDDRVAAQVMDARQVAANFAA 322
Query: 404 KC-DKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
+ DK+L+DAPCSGLG++ R ++Y K +QHL + + +L
Sbjct: 323 ESFDKILVDAPCSGLGLI----------RRKPEIKYTKQPEDLQHLQKIQLAIL 366
>gi|291542594|emb|CBL15704.1| ribosomal RNA small subunit methyltransferase RsmB [Ruminococcus
bromii L2-63]
Length = 446
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 99/338 (29%), Positives = 172/338 (50%), Gaps = 19/338 (5%)
Query: 90 DNEMGYVERTLGFRTKD--LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
+NE Y L K+ L D V+ +V G + R LD++I + + +E
Sbjct: 16 ENEGAYSNIALNNAIKENRLSGVDSSFVSALVYGVLERRITLDYII--RSYSKIPLRKIE 73
Query: 148 PLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
ILR+G +++ +D +P A V+E+V LAK + +NGILR + +D +
Sbjct: 74 TKTKNILRLGILQLLFMDKVPDSAAVNESVNLAKKHKLQKSSGFINGILRNITRAEDKYT 133
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
LP +++ +AR L+ YS P +V+ W G+ A +L+ N R N+
Sbjct: 134 LP------DEKDRARYLSVKYSVPENIVKLWVNSYGENNAEQLLASLNGRAKICCRVNTL 187
Query: 267 KGVTRAD-LVMQLNLLKVPHELSLHLDEFIRVK-TGLQNVIQAGLLKEGLCAVQDESAGL 324
+ T AD L+ +L+ V E +D + ++ TG ++A K GL +QD S+ L
Sbjct: 188 R--TDADTLIKKLSDEGVVAEKIPFIDNALYLENTGSVERLRA--YKSGLFHIQDASSQL 243
Query: 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 384
V +D +P ++D C+APGGK+ A ++ +G +++ D+ +L++++ AK +
Sbjct: 244 CVNFLDAKPRNIMLDVCSAPGGKSFSAAQYMNNRGRIFSCDMFDHKLKLISAGAKRLGI- 302
Query: 385 SVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
+ I T+ D T D + D++L D PCSGLG++S+
Sbjct: 303 TCISTLLRDAST-NDTALPVADRILCDVPCSGLGIMSR 339
>gi|289551003|ref|YP_003471907.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
lugdunensis HKU09-01]
gi|385784624|ref|YP_005760797.1| hypothetical protein SLUG_16860 [Staphylococcus lugdunensis
N920143]
gi|418414299|ref|ZP_12987514.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
lugdunensis ACS-027-V-Sch2]
gi|289180535|gb|ADC87780.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus
lugdunensis HKU09-01]
gi|339894880|emb|CCB54177.1| hypothetical protein SLUG_16860 [Staphylococcus lugdunensis
N920143]
gi|410876906|gb|EKS24803.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
lugdunensis ACS-027-V-Sch2]
Length = 435
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 94/318 (29%), Positives = 161/318 (50%), Gaps = 20/318 (6%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
++DL D L T++V GTI+ + LD+ + + ++ + Q+L + Y+ V
Sbjct: 33 SQDLSAVDKGLYTELVYGTIKRKFTLDYYLRPFVQ-----TKIKGWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
LD +P +A+++E V +AK P GN+VN ILR+++ LP ++ + R
Sbjct: 88 LDKVPNHAIINEAVEIAKHRGGPHNGNIVNAILRQIM------RSDLPNVDDITDEKKR- 140
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
++ YS P W+V W + G + ++ + ++RAN K D++ L +
Sbjct: 141 MSIAYSLPKWIVDHWVTHYGLAQTHRIGQALLTPTETTVRANIVKASIN-DIIDALE--Q 197
Query: 283 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
+ ++ D + + VI+A KEGL ++QD+S+ V + + Q ++D C+
Sbjct: 198 DGYTVTKDSDILSCLHIQGRPVIEARAFKEGLISIQDKSSMFVAQLANLQAHDKVLDACS 257
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402
APGGK +MA L+ G V A DI+ ++ ++ K +N+V HA T
Sbjct: 258 APGGKACHMAEILAPTGSVDATDIHAHKINLIKYNIKKLGLNNV----HAFQHDATQPYT 313
Query: 403 VKCDKVLLDAPCSGLGVL 420
DK+L+DAPCSGLGVL
Sbjct: 314 EMYDKILVDAPCSGLGVL 331
>gi|357638303|ref|ZP_09136176.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
urinalis 2285-97]
gi|418417388|ref|ZP_12990584.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
urinalis FB127-CNA-2]
gi|357586757|gb|EHJ56165.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
urinalis 2285-97]
gi|410871864|gb|EKS19810.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
urinalis FB127-CNA-2]
Length = 440
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 102/350 (29%), Positives = 172/350 (49%), Gaps = 33/350 (9%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ L ++D LVT+IV GT+ + L+ + D + +E + +L + Y+I
Sbjct: 35 LKASQLSEKDKSLVTEIVYGTVARKMTLEWYLSHYIEDRE---KIEKWVYYLLLLSLYQI 91
Query: 162 VKLD-MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
+ LD +P +AVV+E V +AK R GA VN ILRK+ LP + R +
Sbjct: 92 IYLDKIPNHAVVNEAVNIAKNRGNRKGAEKYVNAILRKIT------QEELPDIHSIKR-K 144
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
+ + +YS PVW+V++ G++ A +M S R+ + VT + +
Sbjct: 145 NKKYSILYSIPVWLVKKLMDQFGEQRAKAIM------ESLFQRSKASIRVTDVSKLESIQ 198
Query: 280 LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 339
L + L ++ + G N L +G +QDES+ LV + + I+D
Sbjct: 199 TLTNTQKSQLSTVGLVK-EHG--NFSTDALFLKGEITIQDESSQLVAPTLKIENNDIILD 255
Query: 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 399
C+APGGKT++MAS L+ G V A+D+ + +L ++N+ AK ++ I T D R +
Sbjct: 256 ACSAPGGKTVHMASYLTN-GRVIALDLYQHKLNLVNDNAKRLHLSDKIETKQLDARKVHE 314
Query: 400 -NSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHL 448
S DK+L+DAPCSG+G++ + ++Y K++ Q+L
Sbjct: 315 VFSADSFDKILVDAPCSGIGLIRRK----------PDIKYQKSTLDFQNL 354
>gi|257080479|ref|ZP_05574840.1| ribosomal RNA small subunit methyltransferase [Enterococcus
faecalis E1Sol]
gi|256988509|gb|EEU75811.1| ribosomal RNA small subunit methyltransferase [Enterococcus
faecalis E1Sol]
Length = 459
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 112/401 (27%), Positives = 196/401 (48%), Gaps = 45/401 (11%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ + R+ GGA+++LL NEM +L ++D RL T++V
Sbjct: 14 RYVALETIERVDKGGAYSNLLL--------NEM--------MTKSELSEKDGRLFTELVY 57
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI + L++ + K ++ + +L + Y+++ LD +P +AV++E V +
Sbjct: 58 GTISRKLLLEYYLTPFV---KKPQKIDNWVKNLLILSLYQLLYLDKVPDHAVINEAVEIG 114
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGN-DRAQARALATIYSHPVWMVRRWT 238
K PG G VNG+LR + N + L + DR LAT S P W+ +
Sbjct: 115 KRRGNPGIGKFVNGVLRAF---QRNGAPSLAAISDPVDR-----LATEISMPRWLTEKLL 166
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVK 298
LG+EE +L + S R N+R ++R + + +L + + S + +
Sbjct: 167 AQLGEEETRQLGLSLFEKSHASGRVNTR-FISREEALEELQETGIAAKESQLSPYGVVAE 225
Query: 299 TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 358
G + + L G +QDES+ LV + +P ++D CAAPGGKT ++A+ L +
Sbjct: 226 KGY--LAGSELFINGCLTIQDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAE 283
Query: 359 --GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAPCS 415
G V ++DI+ +++++NE A+ V V++ D R A+ + D++L+DAPCS
Sbjct: 284 AGGRVTSLDIHAHKIKLINENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAPCS 343
Query: 416 GLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
GLG++ R ++Y KT+ Q+L + + +L
Sbjct: 344 GLGLM----------RRKPDIKYHKTANDFQNLPKIQLEIL 374
>gi|116333602|ref|YP_795129.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus brevis ATCC 367]
gi|116098949|gb|ABJ64098.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus brevis ATCC 367]
Length = 447
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 111/400 (27%), Positives = 191/400 (47%), Gaps = 60/400 (15%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
RA++ L R+ GGA+++L +E+TL + L D D R VT++V
Sbjct: 8 RALAVEALTRVA-GGAYSNL--------------QLEQTL--ESHRLSDVDRRFVTNLVY 50
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI+ + L++ + ++ + P + L + Y+ + LD +P A+ +E ++LA
Sbjct: 51 GTIQHQLTLEYYLSKFIKPQQ---KVLPWVKMTLMVALYQELYLDRVPKRAIFNEAIQLA 107
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA----LATIYSHPVWMVR 235
K G V G+L + D LP D AQ + L+ YS P W++
Sbjct: 108 KDRGHEGIRRFVTGVLHAI----DRQGLP-------DLAQIKDPIERLSLQYSVPTWLIT 156
Query: 236 RWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK----VPHELSLHL 291
+ +G+++ ++++ N + S+RAN VT A+ V + P +++ +
Sbjct: 157 ALQEQVGEDKTMQILATINQPAAQSIRANV--AVTTAEAVQAALAAEGYQVTPSQVAANA 214
Query: 292 DEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYM 351
R+ N Q+ L +G +QDESA L V + +PG ++D CAAPGGKT +
Sbjct: 215 ---FRLDDKAAN--QSALFADGAITIQDESAMLPVEALQLRPGDQVLDACAAPGGKTTQI 269
Query: 352 ASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK-CDKV 408
A+ L G V A+D+++ +++++ A+ V + + D R D K D++
Sbjct: 270 AAQLDAHSGGKVTALDLHEKKVKLIEANAERLHVTDRVDAVALDARKIDDQFPKKQFDRI 329
Query: 409 LLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHL 448
L+DAPCSGLG++ R +RY KT +Q L
Sbjct: 330 LVDAPCSGLGLI----------RRKPEIRYEKTPQDIQQL 359
>gi|402837092|ref|ZP_10885623.1| ribosomal RNA small subunit methyltransferase B [Mogibacterium sp.
CM50]
gi|402270108|gb|EJU19377.1| ribosomal RNA small subunit methyltransferase B [Mogibacterium sp.
CM50]
Length = 423
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 145/275 (52%), Gaps = 18/275 (6%)
Query: 151 LQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPL 209
L ILR+GF+ I +++ +PPYA V+E V LA + PG +N +LR V +D +L +
Sbjct: 75 LIILRMGFFAIARMNSVPPYAAVNEAVSLAG-RMTPGEKGFINAVLRAFV--RDGGNLVI 131
Query: 210 PKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGV 269
+ + + ++ YS P +VR +K G + K++ P ++R NS
Sbjct: 132 SSTDD----KLKEISYGYSFPYHLVRFLSKQYGSSDIEKIIKGLYDIPELNIRRNS-NAC 186
Query: 270 TRADLVMQLN---LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVV 326
R DL+ +L+ ++ +EL+ + I V+ G V+ G+ ++Q S+ +
Sbjct: 187 GRVDLLKRLHDRGIVAFVNELTQN---GIIVEDG--QVVNTPEYMRGMFSIQSTSSLRSI 241
Query: 327 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV 386
+P PG ++D CAAPGGK MA ++ +G++ A DI++ R+R++N+T + +
Sbjct: 242 ESFNPAPGDKVLDLCAAPGGKAAAMAEMMNDEGVIIATDIHEHRIRLINDTTARLGLGCI 301
Query: 387 IRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLS 421
+ AD + + DKVL D PCSGLGV++
Sbjct: 302 DAEV-ADAAVYRSDFDEYFDKVLADVPCSGLGVIA 335
>gi|222529034|ref|YP_002572916.1| Fmu (Sun) domain-containing protein [Caldicellulosiruptor bescii
DSM 6725]
gi|222455881|gb|ACM60143.1| Fmu (Sun) domain protein [Caldicellulosiruptor bescii DSM 6725]
Length = 406
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/324 (27%), Positives = 159/324 (49%), Gaps = 16/324 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F K +++D L ++V G +R++ +D+ I + + +L ILR+ YE+
Sbjct: 4 FHQKLKNEKDRALFVELVHGVLRYKSLIDYYINFVAKK----GVKDKRILNILRVATYEL 59
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ L+ +P YA V+E +A + P VN ILR ++ K+ L +++ D
Sbjct: 60 LFLEKIPEYATVNEACEVAS-KINPHLKAFVNAILRNIIRNKNQIEESLERIKDVDYKSY 118
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
L+ S+P +++ + G E+ IK++ + N+ P S++ N++K L +L
Sbjct: 119 --LSIKLSYPRFLIDYLEESYGLEKTIKILEFLNTKPPQSIKINTKKTNVNT-LTQELEK 175
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAV--VDPQPGQSIV 338
+E++ +E + + G N+ + L KEG QD ++ LVV D + + ++
Sbjct: 176 NGFKYEINSRNNEIVLILKG--NIKETELYKEGYFYFQDLASSLVVKFNQEDFKRAKKVI 233
Query: 339 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398
D CAAPGGKT A + G V A DIN+ +L IL E +++I ++ F
Sbjct: 234 DLCAAPGGKTFNCAEVID--GFVVACDINEHKLDILRENILRLGFDNII-VAKSNAEVFN 290
Query: 399 DNSTVKCDKVLLDAPCSGLGVLSK 422
+ K D V+ D PC+G G + K
Sbjct: 291 PDFAEKFDIVIADLPCTGFGAIRK 314
>gi|167772291|ref|ZP_02444344.1| hypothetical protein ANACOL_03668 [Anaerotruncus colihominis DSM
17241]
gi|167665394|gb|EDS09524.1| ribosomal RNA small subunit methyltransferase B [Anaerotruncus
colihominis DSM 17241]
Length = 450
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 103/368 (27%), Positives = 169/368 (45%), Gaps = 40/368 (10%)
Query: 61 RAVSAVRLMRIQFGGAFADL-----LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLV 115
R +A L+R++ GA+++L + K G LD R+
Sbjct: 30 RYTAAQALLRMESAGAYSNLTIDSLIEKNG---------------------LDAREGAFA 68
Query: 116 TDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDE 174
+ + R +DH++ C + +S+ +LQ LR+G ++V +D + YA V E
Sbjct: 69 AALFYTVLERRLTIDHVLAAYC--ARGLASLSKPVLQTLRLGVCQLVWMDGVDDYAAVSE 126
Query: 175 NVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMV 234
+V L + A VNG+LR L D LP+ A L+ YS PVW+V
Sbjct: 127 SVNLTRALGCAKASGFVNGVLRAF-LRADKAVLPVKG------GTAERLSVEYSCPVWLV 179
Query: 235 RRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEF 294
W G+ A++++ + P LRAN+ + V+ L +L V +L+
Sbjct: 180 EAWLSAYGEAAALRVLRASLGRPPIYLRANTLR-VSAQQLCERLAAEGVAAQLAEPPAGC 238
Query: 295 IRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASC 354
+ + ++ A EGL VQD ++ L A + PG+ ++D CAAPGGK+ +A
Sbjct: 239 LLARGRVEPESLASF-GEGLFHVQDRASQLCAAALGALPGERVLDVCAAPGGKSFTIAEH 297
Query: 355 LSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPC 414
+ G + A D+++ R R++ AK + S+I D + D S D+VL D PC
Sbjct: 298 MENSGELVARDLHQKRARMVQCGAKRLGL-SIIHASAGDAAVY-DASLGSFDRVLCDVPC 355
Query: 415 SGLGVLSK 422
SG GV+ +
Sbjct: 356 SGFGVIRR 363
>gi|227878882|ref|ZP_03996787.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus crispatus
JV-V01]
gi|227861516|gb|EEJ69130.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus crispatus
JV-V01]
Length = 427
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 177/356 (49%), Gaps = 43/356 (12%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L T+IV GTI++R +L++ + L + T ++PLLL + Y+++ LD +P
Sbjct: 28 DQNLATNIVYGTIQYRLFLEYQLKGLVRTKLTEKYIKPLLL----MSLYQLIFLDKVPDR 83
Query: 170 AVVDENVRLAK-VALRPGAG-NLVNGILRKL-----VLLKDNNSLPLPKLEGNDRAQARA 222
AV+DE +LAK R AG LVNGILR +L +NN + +
Sbjct: 84 AVLDEANKLAKQYGKRHSAGFRLVNGILRSFTRRGVILPAENNPV-------------KY 130
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
L+ S P W+V+ G ++A ++ N S+R + K + + QL
Sbjct: 131 LSVKESVPEWLVQYLIDNWGLDKAKSVLNSINEPAKNSVRIS--KLADKEQVFAQLERDN 188
Query: 283 V-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
P L D+ I G+ ++ L +EG +QDE+A LVV D + + ++D C
Sbjct: 189 YQPQWSKLSSDDVILSHGGIS---ESDLFEEGKLTIQDEAASLVVEAFDFEQDEHVLDAC 245
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-N 400
+APGGKT+ +A + G V A+DI+ +LR++ + A+ V + ++T D R +
Sbjct: 246 SAPGGKTVQIAESIVN-GDVTALDIHDKKLRLVRDNAQRMHVANKVKTKACDARKATEIF 304
Query: 401 STVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
+ + K+L+DAPCSGLG+L R +RY K +Q+L + + +L
Sbjct: 305 AAGEFTKILVDAPCSGLGLL----------RRKPEIRYTKRQQDLQNLQKIQLAIL 350
>gi|227517271|ref|ZP_03947320.1| RNA methyltransferase [Enterococcus faecalis TX0104]
gi|229548022|ref|ZP_04436747.1| RNA methyltransferase [Enterococcus faecalis ATCC 29200]
gi|255970686|ref|ZP_05421272.1| sun protein [Enterococcus faecalis T1]
gi|255974266|ref|ZP_05424852.1| sun protein [Enterococcus faecalis T2]
gi|256618123|ref|ZP_05474969.1| fmu family protein [Enterococcus faecalis ATCC 4200]
gi|256761053|ref|ZP_05501633.1| sun protein [Enterococcus faecalis T3]
gi|256854793|ref|ZP_05560157.1| sun protein [Enterococcus faecalis T8]
gi|256962961|ref|ZP_05567132.1| fmu [Enterococcus faecalis HIP11704]
gi|257083204|ref|ZP_05577565.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|257088233|ref|ZP_05582594.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|257091364|ref|ZP_05585725.1| SUN protein [Enterococcus faecalis CH188]
gi|307273621|ref|ZP_07554849.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0855]
gi|307284853|ref|ZP_07565009.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0860]
gi|307288887|ref|ZP_07568860.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0109]
gi|312902128|ref|ZP_07761388.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0470]
gi|312905428|ref|ZP_07764542.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0635]
gi|312953217|ref|ZP_07772063.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0102]
gi|384514350|ref|YP_005709443.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis OG1RF]
gi|384516917|ref|YP_005704222.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis 62]
gi|422687001|ref|ZP_16745191.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX4000]
gi|422689950|ref|ZP_16748040.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0630]
gi|422692427|ref|ZP_16750448.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0031]
gi|422700442|ref|ZP_16758289.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX1342]
gi|422704093|ref|ZP_16761908.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX1302]
gi|422720858|ref|ZP_16777465.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0017]
gi|422723543|ref|ZP_16780078.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX2137]
gi|422725675|ref|ZP_16782133.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0312]
gi|422728590|ref|ZP_16784998.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0012]
gi|422732807|ref|ZP_16789136.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0645]
gi|422736050|ref|ZP_16792315.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX1341]
gi|424674077|ref|ZP_18111003.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis 599]
gi|424677375|ref|ZP_18114227.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV103]
gi|424681011|ref|ZP_18117807.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV116]
gi|424685260|ref|ZP_18121960.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV129]
gi|424688620|ref|ZP_18125225.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV25]
gi|424690594|ref|ZP_18127126.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV31]
gi|424694330|ref|ZP_18130733.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV37]
gi|424697942|ref|ZP_18134254.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV41]
gi|424701496|ref|ZP_18137668.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV62]
gi|424704552|ref|ZP_18140647.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV63]
gi|424711680|ref|ZP_18143892.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV65]
gi|424716459|ref|ZP_18145770.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV68]
gi|424721975|ref|ZP_18151042.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV72]
gi|424724707|ref|ZP_18153645.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV73]
gi|424727585|ref|ZP_18156214.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV81]
gi|424744474|ref|ZP_18172768.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV85]
gi|424753885|ref|ZP_18181814.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV93]
gi|424759066|ref|ZP_18186739.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis R508]
gi|430360176|ref|ZP_19426153.1| ribosomal RNA small subunit methyltransferase [Enterococcus
faecalis OG1X]
gi|430366206|ref|ZP_19427387.1| ribosomal RNA small subunit methyltransferase [Enterococcus
faecalis M7]
gi|227075278|gb|EEI13241.1| RNA methyltransferase [Enterococcus faecalis TX0104]
gi|229306898|gb|EEN72894.1| RNA methyltransferase [Enterococcus faecalis ATCC 29200]
gi|255961704|gb|EET94180.1| sun protein [Enterococcus faecalis T1]
gi|255967138|gb|EET97760.1| sun protein [Enterococcus faecalis T2]
gi|256597650|gb|EEU16826.1| fmu family protein [Enterococcus faecalis ATCC 4200]
gi|256682304|gb|EEU21999.1| sun protein [Enterococcus faecalis T3]
gi|256710353|gb|EEU25397.1| sun protein [Enterococcus faecalis T8]
gi|256953457|gb|EEU70089.1| fmu [Enterococcus faecalis HIP11704]
gi|256991234|gb|EEU78536.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|256996263|gb|EEU83565.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|257000176|gb|EEU86696.1| SUN protein [Enterococcus faecalis CH188]
gi|306500159|gb|EFM69503.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0109]
gi|306503112|gb|EFM72369.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0860]
gi|306509634|gb|EFM78676.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0855]
gi|310628834|gb|EFQ12117.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0102]
gi|310631157|gb|EFQ14440.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0635]
gi|311290792|gb|EFQ69348.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0470]
gi|315026431|gb|EFT38363.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX2137]
gi|315028355|gb|EFT40287.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX4000]
gi|315031807|gb|EFT43739.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0017]
gi|315150899|gb|EFT94915.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0012]
gi|315152786|gb|EFT96802.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0031]
gi|315159379|gb|EFU03396.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0312]
gi|315161202|gb|EFU05219.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0645]
gi|315164414|gb|EFU08431.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX1302]
gi|315167222|gb|EFU11239.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX1341]
gi|315171200|gb|EFU15217.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX1342]
gi|315577118|gb|EFU89309.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0630]
gi|323479050|gb|ADX78489.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis 62]
gi|327536239|gb|AEA95073.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis OG1RF]
gi|402352021|gb|EJU86886.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis 599]
gi|402352398|gb|EJU87249.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV116]
gi|402354668|gb|EJU89471.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV103]
gi|402359241|gb|EJU93883.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV129]
gi|402360079|gb|EJU94688.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV25]
gi|402363792|gb|EJU98250.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV31]
gi|402370986|gb|EJV05165.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV37]
gi|402371527|gb|EJV05684.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV62]
gi|402374178|gb|EJV08214.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV41]
gi|402381574|gb|EJV15277.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV63]
gi|402383112|gb|EJV16729.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV65]
gi|402387976|gb|EJV21428.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV68]
gi|402389889|gb|EJV23264.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV72]
gi|402394127|gb|EJV27323.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV73]
gi|402396200|gb|EJV29271.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV81]
gi|402398874|gb|EJV31787.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV85]
gi|402403411|gb|EJV36085.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis ERV93]
gi|402405242|gb|EJV37840.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis R508]
gi|429513088|gb|ELA02681.1| ribosomal RNA small subunit methyltransferase [Enterococcus
faecalis OG1X]
gi|429517220|gb|ELA06687.1| ribosomal RNA small subunit methyltransferase [Enterococcus
faecalis M7]
Length = 459
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 112/401 (27%), Positives = 196/401 (48%), Gaps = 45/401 (11%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ + R+ GGA+++LL NEM +L ++D RL T++V
Sbjct: 14 RYVALETIERVDKGGAYSNLLL--------NEM--------MTKSELSEKDGRLFTELVY 57
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI + L++ + K ++ + +L + Y+++ LD +P +AV++E V +
Sbjct: 58 GTISRKLLLEYYLTPFV---KKPQKVDNWVKNLLILSLYQLLYLDKVPDHAVINEAVEIG 114
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGN-DRAQARALATIYSHPVWMVRRWT 238
K PG G VNG+LR + N + L + DR LAT S P W+ +
Sbjct: 115 KRRGNPGIGKFVNGVLRAF---QRNGAPSLAAISDPVDR-----LATEISMPRWLTEKLL 166
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVK 298
LG+EE +L + S R N+R ++R + + +L + + S + +
Sbjct: 167 AQLGEEETRQLGLSLFEKSHASGRVNTR-FISREEALEELQETGIAAKESQLSPYGVVAE 225
Query: 299 TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 358
G + + L G +QDES+ LV + +P ++D CAAPGGKT ++A+ L +
Sbjct: 226 KGY--LAGSELFINGCLTIQDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAE 283
Query: 359 --GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAPCS 415
G V ++DI+ +++++NE A+ V V++ D R A+ + D++L+DAPCS
Sbjct: 284 AGGRVTSLDIHAHKIKLINENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAPCS 343
Query: 416 GLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
GLG++ R ++Y KT+ Q+L + + +L
Sbjct: 344 GLGLM----------RRKPDIKYHKTANDFQNLPKIQLEIL 374
>gi|301642897|gb|ADK87997.1| At3est62-like protein [Arabidopsis halleri]
gi|301642899|gb|ADK87998.1| At3est62-like protein [Arabidopsis halleri]
gi|301642905|gb|ADK88001.1| At3est62-like protein [Arabidopsis halleri]
gi|301642907|gb|ADK88002.1| At3est62-like protein [Arabidopsis halleri]
gi|301642909|gb|ADK88003.1| At3est62-like protein [Arabidopsis halleri]
gi|301642911|gb|ADK88004.1| At3est62-like protein [Arabidopsis halleri]
gi|301642913|gb|ADK88005.1| At3est62-like protein [Arabidopsis halleri]
gi|301642915|gb|ADK88006.1| At3est62-like protein [Arabidopsis halleri]
gi|301642917|gb|ADK88007.1| At3est62-like protein [Arabidopsis halleri]
gi|301642935|gb|ADK88016.1| At3est62-like protein [Arabidopsis halleri]
gi|301642937|gb|ADK88017.1| At3est62-like protein [Arabidopsis halleri]
gi|301642939|gb|ADK88018.1| At3est62-like protein [Arabidopsis halleri]
gi|301642941|gb|ADK88019.1| At3est62-like protein [Arabidopsis halleri]
Length = 69
Score = 120 bits (302), Expect = 1e-24, Method: Composition-based stats.
Identities = 51/68 (75%), Positives = 64/68 (94%)
Query: 304 VIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYA 363
V+QAGLLKEG+C+VQDESAGL+V+VV PQPG+ I+D CAAPGGKTL+MASCL GQG++YA
Sbjct: 2 VVQAGLLKEGICSVQDESAGLIVSVVKPQPGERIMDACAAPGGKTLFMASCLKGQGMIYA 61
Query: 364 IDINKGRL 371
+D+N+GRL
Sbjct: 62 MDVNEGRL 69
>gi|307276657|ref|ZP_07557775.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX2134]
gi|306506767|gb|EFM75919.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX2134]
Length = 459
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 112/401 (27%), Positives = 196/401 (48%), Gaps = 45/401 (11%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ + R+ GGA+++LL NEM +L ++D RL T++V
Sbjct: 14 RYVALETIERVDKGGAYSNLLL--------NEM--------MTKSELSEKDGRLFTELVY 57
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI + L++ + K ++ + +L + Y+++ LD +P +AV++E V +
Sbjct: 58 GTISRKLLLEYYLTPFV---KKPQKVDNWVKNLLILSLYQLLYLDKVPDHAVINEAVEIG 114
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGN-DRAQARALATIYSHPVWMVRRWT 238
K PG G VNG+LR + N + L + DR LAT S P W+ +
Sbjct: 115 KRRGNPGIGKFVNGVLRAF---QRNGAPSLAAISDPVDR-----LATEISMPRWLTEKLL 166
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVK 298
LG+EE +L + S R N+R ++R + + +L + + S + +
Sbjct: 167 AQLGEEETRQLGLSLFEKSHASGRVNTR-FISREEALEELQETGIAAKESQLSPYGVVAE 225
Query: 299 TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 358
G + + L G +QDES+ LV + +P ++D CAAPGGKT ++A+ L +
Sbjct: 226 KGY--LAGSELFINGCLTIQDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAE 283
Query: 359 --GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAPCS 415
G V ++DI+ +++++NE A+ V V++ D R A+ + D++L+DAPCS
Sbjct: 284 AGGRVTSLDIHAHKIKLINENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAPCS 343
Query: 416 GLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
GLG++ R ++Y KT+ Q+L + + +L
Sbjct: 344 GLGLM----------RRKPDIKYHKTANDFQNLPKIQLEIL 374
>gi|110004340|emb|CAK98678.1| putative ribosomal rna small subunit methyltransferase protein
[Spiroplasma citri]
Length = 423
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 165/315 (52%), Gaps = 21/315 (6%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MP 167
D+D L+ IV GT++ + YL+++ +KT ++ LL + Y+ LD +P
Sbjct: 37 DQDKTLIYRIVYGTLKNKLYLEYIANQFIESKKTNQKLQILLW----MSIYQFRFLDRIP 92
Query: 168 PYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIY 227
YA+V+E V ++K ++ P +N L+K+ KD E N + + L+ Y
Sbjct: 93 NYAIVNEAVNISK-SVSPKYAGFINTTLKKIFDSKD------EIFEINIADETKKLSIKY 145
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHEL 287
S P + ++ A ++M+ + + P S R N+ K ++R +L+ + + + L
Sbjct: 146 SFPSSLYLILRNEYSEDIARQVMIDSLTIPKLSFRVNTLK-ISRDELLSKYS----NYNL 200
Query: 288 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 347
+ L + V + V+ + + K+GL +QDE + + ++DPQ ++D C+APGGK
Sbjct: 201 TKSLVSSVGV-IADKPVVNSEMFKKGLIFIQDEMSMRIAEILDPQETDRVLDMCSAPGGK 259
Query: 348 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 407
+++ ++ +G++ A DI++ ++ ++ A + ++ + D R NS ++ DK
Sbjct: 260 ATHLSQIINNKGIIDAYDISEKKINLIKMNASRLGITNIYPHL-LDARKI--NSEIQYDK 316
Query: 408 VLLDAPCSGLGVLSK 422
+L DAPCSGLGV+ +
Sbjct: 317 ILCDAPCSGLGVIKR 331
>gi|257417249|ref|ZP_05594243.1| fmu family protein [Enterococcus faecalis ARO1/DG]
gi|307292139|ref|ZP_07572005.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0411]
gi|422696070|ref|ZP_16754047.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX4244]
gi|257159077|gb|EEU89037.1| fmu family protein [Enterococcus faecalis ARO1/DG]
gi|306496792|gb|EFM66343.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0411]
gi|315146584|gb|EFT90600.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX4244]
Length = 459
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 112/401 (27%), Positives = 196/401 (48%), Gaps = 45/401 (11%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ + R+ GGA+++LL NEM +L ++D RL T++V
Sbjct: 14 RYVALETIERVDKGGAYSNLLL--------NEM--------MTKSELSEKDGRLFTELVY 57
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI + L++ + K ++ + +L + Y+++ LD +P +AV++E V +
Sbjct: 58 GTISRKLLLEYYLTPFV---KKPQKVDNWVRNLLILSLYQLLYLDKVPDHAVINEAVEIG 114
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGN-DRAQARALATIYSHPVWMVRRWT 238
K PG G VNG+LR + N + L + DR LAT S P W+ +
Sbjct: 115 KRRGNPGIGKFVNGVLRAF---QRNGAPSLAAISDPVDR-----LATEISMPRWLTEKLL 166
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVK 298
LG+EE +L + S R N+R ++R + + +L + + S + +
Sbjct: 167 AQLGEEETRQLGLSLFEKSHASGRVNTR-FISREEALEELQETGIAAKESQLSPYGVVAE 225
Query: 299 TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 358
G + + L G +QDES+ LV + +P ++D CAAPGGKT ++A+ L +
Sbjct: 226 KGY--LAGSELFINGCLTIQDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAE 283
Query: 359 --GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAPCS 415
G V ++DI+ +++++NE A+ V V++ D R A+ + D++L+DAPCS
Sbjct: 284 AGGRVTSLDIHAHKIKLINENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAPCS 343
Query: 416 GLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
GLG++ R ++Y KT+ Q+L + + +L
Sbjct: 344 GLGLM----------RRKPDIKYHKTANDFQNLPKIQLEIL 374
>gi|153809822|ref|ZP_01962490.1| hypothetical protein RUMOBE_00203 [Ruminococcus obeum ATCC 29174]
gi|149834000|gb|EDM89080.1| ribosomal RNA small subunit methyltransferase B [Ruminococcus obeum
ATCC 29174]
Length = 450
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 161/320 (50%), Gaps = 31/320 (9%)
Query: 114 LVTDIVGGTIRWRRYLDHLICLLCHDEKTFSS-----MEPLLLQILRIGFYEIVKLD-MP 167
+T + GT+ +R +D++I +FS M+P + +ILR Y++ +D +P
Sbjct: 46 FITRVCEGTLEYRILIDYII-------DSFSKIPVDKMKPPIREILRSAVYQLKFMDRVP 98
Query: 168 PYAVVDENVRLAKVALRPGAGNL---VNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
AV +E V+LA+ + G NL VNG+LR + + + L P E N R L+
Sbjct: 99 DSAVCNEAVKLAQ---KKGFYNLKPFVNGVLRTVA--RQMDELEYPPREEN---LVRYLS 150
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQ-LNLLKV 283
YS P +V RW G+E K++ + ++R R + D + + L V
Sbjct: 151 VRYSMPEELVERWLADYGEETTEKMLADFLEEKPVTVRC--RTYLNSVDKICESLKNQGV 208
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
E + +L R+ +G +++ +G VQD S+ LV + +PQ G ++D CAA
Sbjct: 209 KVEQAPYLPYAKRI-SGYNHILALDAFIQGKMVVQDVSSMLVAEIANPQKGDYVIDMCAA 267
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV-IRTIHADLRTFADNST 402
PGGK+L++ + G G V A DI++ ++ ++ E + ++NS+ ++ D F S
Sbjct: 268 PGGKSLHIGDKMEGFGTVDARDISQYKVNLIEEN--IQRLNSINVQAKVQDATIFDVESE 325
Query: 403 VKCDKVLLDAPCSGLGVLSK 422
K D VL D PCSG GV+ K
Sbjct: 326 CKADIVLADVPCSGYGVIGK 345
>gi|14521110|ref|NP_126585.1| sun protein (fmu protein) [Pyrococcus abyssi GE5]
gi|5458327|emb|CAB49816.1| Sun/NOL1/NOP nucleolar protein [Pyrococcus abyssi GE5]
gi|380741676|tpe|CCE70310.1| TPA: sun protein (fmu protein) [Pyrococcus abyssi GE5]
Length = 450
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/296 (28%), Positives = 149/296 (50%), Gaps = 12/296 (4%)
Query: 124 RWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVAL 183
+WR +D ++ + K ++ L +LRIG +E+ + P D VR+ K
Sbjct: 59 KWRAKIDFILNSVLRGSKV-EDLDLYLANLLRIGTFEMKFKGVNPAIATDSVVRVVKEKF 117
Query: 184 RPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQ 243
N ILR++ K N L KL+ DR + L+ +SHP W V LG
Sbjct: 118 DLTKAKFANAILREVE--KFNVEKALRKLKEKDRIEW--LSVRFSHPRWYVEYIIDMLGY 173
Query: 244 EEAIKLMVWNNSDPSFSLRANSRKG-VTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQ 302
+EA++L++ N + +R N+ K + + ++ N ++V +D+ ++V +
Sbjct: 174 DEAVRLLLSNLRPQRYYVRVNTLKADIDKVRRYLEENGVRVA---LTPVDDVLKVLDYEK 230
Query: 303 NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVY 362
V + ++G +QD ++ V V++P+PG+ ++D AAPG KT + A+ + +G +
Sbjct: 231 PVTRLEWHRKGYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIV 290
Query: 363 AIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLG 418
A+D + RL + E K V +V + +HAD ++F D +K++LDAPCS G
Sbjct: 291 AVDYSYDRLMKMKERMKRLGVKNV-KLVHADGQSFIDREGF--EKIILDAPCSSSG 343
>gi|229547453|ref|ZP_04436178.1| RNA methyltransferase [Enterococcus faecalis TX1322]
gi|229307485|gb|EEN73472.1| RNA methyltransferase [Enterococcus faecalis TX1322]
Length = 459
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 112/401 (27%), Positives = 196/401 (48%), Gaps = 45/401 (11%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ + R+ GGA+++LL NEM +L ++D RL T++V
Sbjct: 14 RYVALETIERVDKGGAYSNLLL--------NEM--------MTKSELSEKDGRLFTELVY 57
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI + L++ + K ++ + +L + Y+++ LD +P +AV++E V +
Sbjct: 58 GTISRKLLLEYYLTPFV---KKPQKVDNWVKNLLILSLYQLLYLDKVPDHAVINEAVEIG 114
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGN-DRAQARALATIYSHPVWMVRRWT 238
K PG G VNG+LR + N + L + DR LAT S P W+ +
Sbjct: 115 KRRGNPGIGKFVNGVLRAF---QRNGAPSLAAISDPVDR-----LATEISMPRWLTEKLL 166
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVK 298
LG+EE +L + S R N+R ++R + + +L + + S + +
Sbjct: 167 AQLGEEETRQLGLSLFEKSHASGRVNTR-FISREEALEELQETGIAAKESQLSPYGVVAE 225
Query: 299 TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 358
G + + L G +QDES+ LV + +P ++D CAAPGGKT ++A+ L +
Sbjct: 226 KGY--LAGSELFINGCLTIQDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAE 283
Query: 359 --GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAPCS 415
G V ++DI+ +++++NE A+ V V++ D R A+ + D++L+DAPCS
Sbjct: 284 AGGRVTSLDIHAHKIKLINENAQRLNVADVVQAEKLDARQVAEEFPAETFDRILVDAPCS 343
Query: 416 GLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
GLG++ R ++Y KT+ Q+L + + +L
Sbjct: 344 GLGLM----------RRKPDIKYHKTANDFQNLPKIQLEIL 374
>gi|300861499|ref|ZP_07107583.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TUSoD Ef11]
gi|422740058|ref|ZP_16795215.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX2141]
gi|428768232|ref|YP_007154343.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis str. Symbioflor 1]
gi|295114431|emb|CBL33068.1| ribosomal RNA small subunit methyltransferase RsmB [Enterococcus
sp. 7L76]
gi|300848960|gb|EFK76713.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TUSoD Ef11]
gi|315144147|gb|EFT88163.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX2141]
gi|427186405|emb|CCO73629.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis str. Symbioflor 1]
Length = 459
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 112/401 (27%), Positives = 196/401 (48%), Gaps = 45/401 (11%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ + R+ GGA+++LL NEM +L ++D RL T++V
Sbjct: 14 RYVALETIERVDKGGAYSNLLL--------NEM--------MTKSELSEKDGRLFTELVY 57
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI + L++ + K ++ + +L + Y+++ LD +P +AV++E V +
Sbjct: 58 GTISRKLLLEYYLTPFV---KKPQKVDNWVKNLLILSLYQLLYLDKVPDHAVINEAVEIG 114
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGN-DRAQARALATIYSHPVWMVRRWT 238
K PG G VNG+LR + N + L + DR LAT S P W+ +
Sbjct: 115 KRRGNPGIGKFVNGVLRAF---QRNGAPSLAAISDPVDR-----LATEISMPRWLTEKLL 166
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVK 298
LG+EE +L + S R N+R ++R + + +L + + S + +
Sbjct: 167 AQLGEEETRQLGLSLFEKSHASGRVNTR-FISREEALEELQETGIAAKESQLSPYGVVAE 225
Query: 299 TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 358
G + + L G +QDES+ LV + +P ++D CAAPGGKT ++A+ L +
Sbjct: 226 KGY--LAGSELFINGCLTIQDESSMLVAPAMQIEPHHCVLDACAAPGGKTTHIATFLEAE 283
Query: 359 --GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAPCS 415
G V ++DI+ +++++NE A+ V V++ D R A+ + D++L+DAPCS
Sbjct: 284 AGGRVTSLDIHAHKIKLINENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAPCS 343
Query: 416 GLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
GLG++ R ++Y KT+ Q+L + + +L
Sbjct: 344 GLGLM----------RRKPDIKYHKTANDFQNLPKIQLEIL 374
>gi|256960468|ref|ZP_05564639.1| fmu [Enterococcus faecalis Merz96]
gi|293385126|ref|ZP_06630952.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis R712]
gi|293389099|ref|ZP_06633571.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis S613]
gi|312906690|ref|ZP_07765690.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis DAPTO 512]
gi|312910848|ref|ZP_07769684.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis DAPTO 516]
gi|256950964|gb|EEU67596.1| fmu [Enterococcus faecalis Merz96]
gi|291077603|gb|EFE14967.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis R712]
gi|291081567|gb|EFE18530.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis S613]
gi|310627338|gb|EFQ10621.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis DAPTO 512]
gi|311288871|gb|EFQ67427.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis DAPTO 516]
Length = 459
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 112/401 (27%), Positives = 196/401 (48%), Gaps = 45/401 (11%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ + R+ GGA+++LL NEM +L ++D RL T++V
Sbjct: 14 RYVALETIERVDKGGAYSNLLL--------NEM--------MTKSELSEKDGRLFTELVY 57
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI + L++ + K ++ + +L + Y+++ LD +P +AV++E V +
Sbjct: 58 GTISRKLLLEYYLTPFV---KKPQRVDNWVKNLLILSLYQLLYLDKVPDHAVINEAVEIG 114
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGN-DRAQARALATIYSHPVWMVRRWT 238
K PG G VNG+LR + N + L + DR LAT S P W+ +
Sbjct: 115 KRRGNPGIGKFVNGVLRAF---QRNGAPSLAAISDPVDR-----LATEISMPRWLTEKLL 166
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVK 298
LG+EE +L + S R N+R ++R + + +L + + S + +
Sbjct: 167 AQLGEEETRQLGLSLFEKSHASGRVNTR-FISREEALEELQETGIAAKESQLSPYGVVAE 225
Query: 299 TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 358
G + + L G +QDES+ LV + +P ++D CAAPGGKT ++A+ L +
Sbjct: 226 KGY--LAGSELFINGCLTIQDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAE 283
Query: 359 --GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAPCS 415
G V ++DI+ +++++NE A+ V V++ D R A+ + D++L+DAPCS
Sbjct: 284 AGGRVTSLDIHAHKIKLINENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAPCS 343
Query: 416 GLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
GLG++ R ++Y KT+ Q+L + + +L
Sbjct: 344 GLGLM----------RRKPDIKYHKTANDFQNLPKIQLEIL 374
>gi|373106183|ref|ZP_09520486.1| ribosomal RNA small subunit methyltransferase B [Stomatobaculum
longum]
gi|371652558|gb|EHO17966.1| ribosomal RNA small subunit methyltransferase B [Stomatobaculum
longum]
Length = 447
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/319 (29%), Positives = 158/319 (49%), Gaps = 20/319 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+ + + L +V G++ + LD LI + F ++P++ ILR+ Y+++ L
Sbjct: 38 MPEEERALTERLVHGSVEYLPQLDRLIA--ARSKTPFRKLKPVIRCILRLSLYQLLYLSR 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +AVV+E V+L + G VN ++R+ V +D +L+G+ + A
Sbjct: 96 IPAHAVVNEAVKLTERRGLFGLKGFVNAMVRRFVRERDEIRA---ELDGS-----QDFAL 147
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA--DLVMQLNLLKV 283
Y+ P W+ R+T G+EE+ K+ +LR N R G A L +
Sbjct: 148 RYALPPWLAERFTAQFGREESEKIAARFLEPAPLTLRLN-RTGFIAAGEPAAATEGLTQS 206
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
P+ D FI + GL I+ L EG+ VQD S+ L V P+PG+ ++D CAA
Sbjct: 207 PY----APDSFI-AEEGLTEPIRQQL-AEGMFFVQDLSSSLAVQAAQPKPGERVLDLCAA 260
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403
PGGK+L A C+ G+G + + D++ ++ + E + +R + +D F +
Sbjct: 261 PGGKSLAAADCMRGEGSIVSADLSPQKVERMRENVARTGFSGCVRPLQSDAGVFRPDWEE 320
Query: 404 KCDKVLLDAPCSGLGVLSK 422
D V+ D PCSGLGVLS+
Sbjct: 321 AFDLVIADLPCSGLGVLSR 339
>gi|299143974|ref|ZP_07037054.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus sp.
oral taxon 386 str. F0131]
gi|298518459|gb|EFI42198.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus sp.
oral taxon 386 str. F0131]
Length = 440
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 161/317 (50%), Gaps = 12/317 (3%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+D RD L+ +I G ++ + L+H++ + + + +L IL++G Y+I
Sbjct: 34 IDKRDYNLIVNITTGVVQNKLLLEHIVS--KYSKIKIKKIHRTILTILQMGIYQIFFTSR 91
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ---ARA 222
+P Y++++E+V LAK+ G+ VNG+LR +L+D ++ + ND + A
Sbjct: 92 IPDYSIINESVNLAKIFGNQGSAGFVNGLLRN--ILRDKENIEKSEFWLNDVKETDYAEY 149
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
L+ YSHP + V + G++ +L+ NN F++R N+ K + DL +L
Sbjct: 150 LSIYYSHPKFYVDLILEEKGKDFTKELLKCNNVQAPFTIRVNTLK-CSVEDLAGKLKKRG 208
Query: 283 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
E + + + VK ++++ + L KEG +QDE++ LV ++D C+
Sbjct: 209 FDTEKTKYSKNALIVKNP-ESILDSFLFKEGYFYIQDEASMLVSEFTKFNEKAKVLDLCS 267
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402
APGGK+ +A L+ + + DI+ ++ ++ E + + + I+ + D +
Sbjct: 268 APGGKSFNIA-MLNRDASIISCDISNKKISLIRENMERLGIKN-IKILKNDATIYNKTFY 325
Query: 403 VKCDKVLLDAPCSGLGV 419
D V++DAPCSGLG+
Sbjct: 326 NLFDNVIVDAPCSGLGL 342
>gi|256847372|ref|ZP_05552818.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
coleohominis 101-4-CHN]
gi|256716036|gb|EEU31011.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
coleohominis 101-4-CHN]
Length = 447
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 103/354 (29%), Positives = 173/354 (48%), Gaps = 30/354 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDH-LICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
L + D RLVT +V G ++ + L++ L L+ D ++ +L + FY+ +D
Sbjct: 40 LKEVDKRLVTTLVYGVLQHKLTLEYWLTPLVKRDPDSWVKT------LLMLSFYQYQFMD 93
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A DE +++AK PG V G+L L+ + PL + R L+
Sbjct: 94 RIPEWAATDEAIKIAKWRGNPGIRKFVTGVLHSF--LRQGPADPLEIADSIKR-----LS 146
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
I S P W+VR GQE+ KL+ N SLR N+ + T + + L ++
Sbjct: 147 IIGSIPEWLVRCLLHQYGQEQVEKLVRQINEPSRVSLRVNTAR-TTVQEAIQTLANEQID 205
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
+ S + + V++G NV+ + G+ +QDESA L V + + + ++D CAAP
Sbjct: 206 VQQSKVAQDGLVVQSG--NVLTSAAFANGMVTIQDESAMLAVEALQLRGDERVLDACAAP 263
Query: 345 GGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403
GGKT +A+ L G V A+DI++ ++R++ + + V + + D R D T
Sbjct: 264 GGKTGQIAAALDPAMGQVDALDIHQHKVRLIRKNMERLGVANRVVARQLDARQVDDYFTD 323
Query: 404 KC-DKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
+ DK+L+DAPCSG+G++ + +RY KTS L E + +L
Sbjct: 324 ESFDKILVDAPCSGIGLIRRK----------PEIRYDKTSSTSSRLHEIQGTIL 367
>gi|29377578|ref|NP_816732.1| Sun protein [Enterococcus faecalis V583]
gi|227554542|ref|ZP_03984589.1| RNA methyltransferase [Enterococcus faecalis HH22]
gi|257417966|ref|ZP_05594960.1| SUN protein [Enterococcus faecalis T11]
gi|422713873|ref|ZP_16770621.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0309A]
gi|422718502|ref|ZP_16775155.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0309B]
gi|29345045|gb|AAO82802.1| Sun protein [Enterococcus faecalis V583]
gi|227176340|gb|EEI57312.1| RNA methyltransferase [Enterococcus faecalis HH22]
gi|257159794|gb|EEU89754.1| SUN protein [Enterococcus faecalis T11]
gi|315573270|gb|EFU85461.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0309B]
gi|315581156|gb|EFU93347.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0309A]
Length = 459
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 112/401 (27%), Positives = 196/401 (48%), Gaps = 45/401 (11%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ + R+ GGA+++LL NEM +L ++D RL T++V
Sbjct: 14 RYVALETIERVDKGGAYSNLLL--------NEM--------MTKSELSEKDGRLFTELVY 57
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI + L++ + K ++ + +L + Y+++ LD +P +AV++E V +
Sbjct: 58 GTISRKLLLEYYLTPFV---KKPQKVDNWVKNLLILSLYQLLYLDKVPDHAVINEAVEIG 114
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGN-DRAQARALATIYSHPVWMVRRWT 238
K PG G VNG+LR + N + L + DR LAT S P W+ +
Sbjct: 115 KRRGNPGIGKFVNGVLRAF---QRNGAPSLAAISDPVDR-----LATEISMPRWLTEKLL 166
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVK 298
LG+EE +L + S R N+R ++R + + +L + + S + +
Sbjct: 167 AQLGEEETRQLGLSLFEKSHASGRVNTR-FISREEALEELQETGIAAKESQLSPYGVVAE 225
Query: 299 TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 358
G + + L G +QDES+ LV + +P ++D CAAPGGKT ++A+ L +
Sbjct: 226 KGY--LAGSELFINGCLTIQDESSMLVAPSMQIEPHHRVLDACAAPGGKTTHIATFLEAE 283
Query: 359 --GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAPCS 415
G V ++DI+ +++++NE A+ V V++ D R A+ + D++L+DAPCS
Sbjct: 284 AGGRVTSLDIHAHKIKLINENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAPCS 343
Query: 416 GLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
GLG++ R ++Y KT+ Q+L + + +L
Sbjct: 344 GLGLM----------RRKPDIKYHKTANDFQNLPKIQLEIL 374
>gi|256843396|ref|ZP_05548884.1| ribosomal small subunit methyltransferase B [Lactobacillus
crispatus 125-2-CHN]
gi|256614816|gb|EEU20017.1| ribosomal small subunit methyltransferase B [Lactobacillus
crispatus 125-2-CHN]
Length = 453
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 118/407 (28%), Positives = 196/407 (48%), Gaps = 61/407 (14%)
Query: 61 RAVSAVRLMRIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIV 119
RAVS L+++ G+++++ LN K S +L D L T+IV
Sbjct: 20 RAVSLETLIKVLDQGSYSNISLNNSLKHS-----------------NLSIADQNLATNIV 62
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRL 178
GTI++R +L++ + L + T ++PLLL + Y+++ LD +P AV+DE +L
Sbjct: 63 YGTIQYRLFLEYQLKGLVRTKLTEKYIKPLLL----MSLYQLIFLDKVPDRAVLDEANKL 118
Query: 179 AK-VALRPGAG-NLVNGILRKL-----VLLKDNNSLPLPKLEGNDRAQARALATIYSHPV 231
AK R AG L NGILR +L +NN + + L+ S P
Sbjct: 119 AKQYGKRHSAGFRLANGILRSFTRRGVILPAENNPV-------------KYLSVKESVPE 165
Query: 232 WMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV-PHELSLH 290
W+V+ G ++A ++ N S+R + K + + QL P L
Sbjct: 166 WLVQYLIDNWGLDKAKSVLNSINEPAKNSVRIS--KLADKEQVFAQLERDNYQPQWSKLS 223
Query: 291 LDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLY 350
D+ I G+ ++ L +EG +QDE+A LVV D + + ++D C+APGGKT+
Sbjct: 224 SDDVILSHGGIS---ESDLFEEGKLTIQDEAASLVVEAFDFEQDEHVLDACSAPGGKTVQ 280
Query: 351 MASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCDKVL 409
+A + G V A+DI+ +LR++ + A+ V + ++T D R + + + K+L
Sbjct: 281 IAESIVN-GDVTALDIHDKKLRLVRDNAQRMHVANKVKTKACDARKATEIFAAGEFTKIL 339
Query: 410 LDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
+DAPCSGLG+L R +RY K +Q+L + + +L
Sbjct: 340 VDAPCSGLGLL----------RRKPEIRYTKRQQDLQNLQKIQLAIL 376
>gi|148544395|ref|YP_001271765.1| sun protein [Lactobacillus reuteri DSM 20016]
gi|184153759|ref|YP_001842100.1| rRNA methylase [Lactobacillus reuteri JCM 1112]
gi|227363180|ref|ZP_03847314.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus reuteri
MM2-3]
gi|325682715|ref|ZP_08162231.1| RNA methyltransferase Sun [Lactobacillus reuteri MM4-1A]
gi|148531429|gb|ABQ83428.1| sun protein [Lactobacillus reuteri DSM 20016]
gi|183225103|dbj|BAG25620.1| rRNA methylase [Lactobacillus reuteri JCM 1112]
gi|227071786|gb|EEI10075.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus reuteri
MM2-3]
gi|324977065|gb|EGC14016.1| RNA methyltransferase Sun [Lactobacillus reuteri MM4-1A]
Length = 449
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 102/343 (29%), Positives = 169/343 (49%), Gaps = 37/343 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D+D RL T+I+ G ++ + L++ + ++ ++P + +L Y+ L+
Sbjct: 41 LADKDRRLATNIIYGVLQHKLTLEYWLNGFIQGKR----LDPWVKTLLLSALYQYHYLER 96
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +AV DE++ +AK PG V G+L ++ LP L + R L+
Sbjct: 97 VPDWAVTDESIEIAKRRGNPGIRKFVTGVLHAIL------RKGLPDLRQINERDLR-LSI 149
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQ-LNLLKVP 284
S P W+V T G+E+ K++ N +R N+ K T V Q L+ +
Sbjct: 150 ENSVPRWLVNELTGEYGEEDTEKILQSINEPAHQVIRVNTAK--TDLPTVKQTLDAAGIE 207
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
++ + + G +I + L K G +QDESA L V + +PG ++D CAAP
Sbjct: 208 YQEGQVAQNALVITKG--EIISSDLFKNGEITIQDESAMLAVESMHIEPGDKVLDACAAP 265
Query: 345 GGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA-DLRT----FA 398
GGKT+ +A L+ + G V A+DI++ ++R++ + A+ V + T HA D R F
Sbjct: 266 GGKTVQIAETLADEDGHVDALDIHQHKVRLIEKNARRLGVEKRV-TAHALDAREVDQLFD 324
Query: 399 DNSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKT 441
D S DK+L+DAPCSG+G+L + +RY KT
Sbjct: 325 DES---FDKILVDAPCSGIGLLRRK----------PEIRYTKT 354
>gi|417937843|ref|ZP_12581143.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
infantis SK970]
gi|343392107|gb|EGV04680.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
infantis SK970]
Length = 438
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 101/316 (31%), Positives = 159/316 (50%), Gaps = 27/316 (8%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D LVT++V GT+ + L+ + D S L +L + Y++ LD +P +
Sbjct: 43 DKGLVTELVYGTVARKLTLEWYLSHFIEDRDKLDSW---LYVLLLMSVYQLQYLDKLPDH 99
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
AVV+E V +AK+ + G+ LVN +LR++ L++ LP ++ R R + YS
Sbjct: 100 AVVNEAVEIAKLR-KKGSEKLVNAVLRRI--LREG----LPDIDSIKRKNKRD-SIAYSL 151
Query: 230 PVWMVRRWTKYLGQE--EAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHEL 287
PVW++ + + G+E +AI + + S + SRK + L +LL P L
Sbjct: 152 PVWLISKLKEEYGEERAQAIFESLLQRNKASIRVTDLSRKEEIKTLLGASDSLLS-PAGL 210
Query: 288 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 347
F L EGL +QDES+ LV +D Q + I+D CAAPGGK
Sbjct: 211 VKEQGHFA----------SHDLFSEGLITIQDESSQLVAPTLDLQGPEQILDACAAPGGK 260
Query: 348 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCD 406
T +MAS L+ G V A+D+ +L ++ E A+ V ++T D R + + D
Sbjct: 261 TAHMASYLT-TGQVTALDLYDHKLTLIQENAERLGVADRVKTQKLDARKVHEFFGKDQFD 319
Query: 407 KVLLDAPCSGLGVLSK 422
K+L+DAPCSG+G+L +
Sbjct: 320 KILVDAPCSGIGLLRR 335
>gi|313665137|ref|YP_004047008.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma leachii
PG50]
gi|312949207|gb|ADR23803.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma leachii
PG50]
Length = 423
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/320 (28%), Positives = 165/320 (51%), Gaps = 23/320 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K+L+ +D V ++V G I + +LD+L+ L +KT ++ +LL I Y+++ L
Sbjct: 31 KNLNQQDKDFVFNLVHGVISNKIHLDYLLAKLIDVKKTSIDLQIILL----ISLYQMIYL 86
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
+ +P YA+V+E+V L K + A N +N IL K + KD LE N + L
Sbjct: 87 NSIPNYAIVNESVNLIKTTSQKQA-NFINAILNKFLRFKD------KYLEINLANKDLEL 139
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
++S + K ++ +++V N P +R N+ K +T L + + +
Sbjct: 140 CILHSFSYELYLMLIKQYDKDIVNQIVVNNQQIPKLYIRINTLK-ITSDQLFNKYKDIYL 198
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
+ +++ D I KT +I + L K G +QD+++ LV +++P ++D C+A
Sbjct: 199 LEKTNVN-DCLIANKT----IINSDLYKNGFITIQDKASILVSQILNPSLNAKVLDICSA 253
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV-IRTIHADLRTFADNST 402
PGGK +++ L G + A +IN+ +++++ E ++++N + I I+ D R
Sbjct: 254 PGGKLTHLSMILKNTGNIIANEINESKIKLIREN--INRLNCLNISVINMDARKIKQKQ- 310
Query: 403 VKCDKVLLDAPCSGLGVLSK 422
+ D +LLDAPCSG GV +
Sbjct: 311 -EFDYILLDAPCSGFGVFKR 329
>gi|418637495|ref|ZP_13199814.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
lugdunensis VCU139]
gi|374838741|gb|EHS02276.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
lugdunensis VCU139]
Length = 435
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/318 (29%), Positives = 160/318 (50%), Gaps = 20/318 (6%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
++DL D L T++V GTI+ + LD+ + + ++ + Q+L + Y+ V
Sbjct: 33 SQDLSAVDKGLYTELVYGTIKRKFTLDYYLRPFVQ-----TKIKGWVRQLLWMSIYQYVY 87
Query: 164 LD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
LD +P +A+++E V +AK P GN+VN ILR+++ LP ++ + R
Sbjct: 88 LDKVPNHAIINEAVEIAKHRGGPHNGNIVNAILRQIM------RSDLPNVDDITDEKKR- 140
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
++ YS P W+V W + G + ++ + ++RAN K D++ L +
Sbjct: 141 MSIAYSLPKWIVDHWVTHYGLAQTHRIGQALLTPTETTVRANIVKASIN-DIIDALE--Q 197
Query: 283 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
+ ++ D + + VI+A KEGL ++QD+S+ V + + Q ++D C+
Sbjct: 198 DGYTVTKDSDILSCLHIQGRPVIEARAFKEGLISIQDKSSMFVAQLANLQAHDKVLDACS 257
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402
APGGK MA L+ G V A DI+ ++ ++ K +N+V HA T
Sbjct: 258 APGGKACQMAEILAPTGSVDATDIHAHKINLIKYNIKKLGLNNV----HAFQHDATQPYT 313
Query: 403 VKCDKVLLDAPCSGLGVL 420
DK+L+DAPCSGLGVL
Sbjct: 314 EMYDKILVDAPCSGLGVL 331
>gi|293402263|ref|ZP_06646401.1| ribosomal RNA small subunit methyltransferase B
[Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291304370|gb|EFE45621.1| ribosomal RNA small subunit methyltransferase B
[Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 415
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 97/329 (29%), Positives = 157/329 (47%), Gaps = 41/329 (12%)
Query: 105 KDLD---DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
K+LD +D L+T IV GT++ R +C ++ + +L + Y++
Sbjct: 27 KELDKAEHKDKGLITTIVYGTLQNYR-----LCRYQWEDMVQKLPKEETAVLLDMSAYQL 81
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+D +P YA+++E V +AK G LVN +L K V+ + LP D Q
Sbjct: 82 FYMDKLPAYAIINEAVEIAKKHGGKKQGALVNAVLHK-VMQRGQRELP------KDALQK 134
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
A+ T SHP W+++ W G EE + + +N + +RK R +NL
Sbjct: 135 LAIKT--SHPDWLIKMWKAQYG-EETCRAICESNME--------TRKQCAR------VNL 177
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGL-------LKEGLCAVQDESAGLVVAVVDPQP 333
+++ E L D V +V G +G+ ++QDE++ LV VDPQP
Sbjct: 178 MRMSREELLAQDNQFTVGQLASSVYYQGTSLAHTSWYVDGMLSIQDEASQLVAYCVDPQP 237
Query: 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD 393
+ I+D CAAPG K+ +MA + +G + DI++ R+ ++ + A Q++S I I D
Sbjct: 238 KERILDVCAAPGTKSTHMAELMQDEGEIICGDIHEHRVELIQQGADRLQLHS-IHPIVMD 296
Query: 394 LRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
D+VL D PCSG GVL++
Sbjct: 297 ATELHGLQEASFDRVLCDVPCSGYGVLAR 325
>gi|417003276|ref|ZP_11942347.1| putative ribosomal RNA small subunit methyltransferase B
[Anaerococcus prevotii ACS-065-V-Col13]
gi|325478752|gb|EGC81863.1| putative ribosomal RNA small subunit methyltransferase B
[Anaerococcus prevotii ACS-065-V-Col13]
Length = 426
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/329 (28%), Positives = 151/329 (45%), Gaps = 46/329 (13%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYA 170
+L +T ++ G + + YLD++I L + + +L IL IG Y I L+ YA
Sbjct: 34 NLSYITKVIYGVLENKIYLDYMIDKLS--KVKLRKIHKNVLLILEIGIYNIHFLETKDYA 91
Query: 171 VVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHP 230
VD+ V L K + AG VN ILR + N + K++ +D ++L+ YS P
Sbjct: 92 TVDKLVDLTKKKNKRSAG-FVNAILRNFI----RNEKEISKIKISD--DLKSLSVRYSMP 144
Query: 231 VWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK-------------GVTRADLVMQ 277
+ + G + + + + N + S+R N+ K G T D +
Sbjct: 145 YDITKYIFDNYGMDYTKEFLRYANKESKLSIRVNTTKINVKSLKKDLESIGYTVKDSNIS 204
Query: 278 LNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 337
N L V + GL + L K GL +Q E++ V V++P+ +I
Sbjct: 205 KNALIVDNP------------NGL---VSTDLFKNGLFTIQQEASMKTVEVLNPRHNSNI 249
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV----IRTIHAD 393
+D CAAPG KT Y+A G + A DI+ +L ++ + +N + I + D
Sbjct: 250 LDICAAPGTKTTYIAEYTENTGKILANDISFNKLDLI-----MENINRLGLRNIELTNFD 304
Query: 394 LRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
R + D K D +L+DAPCSGLGV+++
Sbjct: 305 ARVYKDEYKEKFDYILVDAPCSGLGVMAR 333
>gi|317472520|ref|ZP_07931840.1| ribosomal RNA small subunit methyltransferase B [Anaerostipes sp.
3_2_56FAA]
gi|316899997|gb|EFV21991.1| ribosomal RNA small subunit methyltransferase B [Anaerostipes sp.
3_2_56FAA]
Length = 448
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/316 (29%), Positives = 153/316 (48%), Gaps = 11/316 (3%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-M 166
+ +D T + GT+ R +D++I L ++ M+PL+ +LR+G +I+ +D +
Sbjct: 37 EKKDRAFFTRLCQGTLERRLTIDYVIDLYSKTKE--RKMKPLVRSLLRMGACQILFMDHI 94
Query: 167 PPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI 226
P A +E V+LAK VNG+LR + + +P P ++ + L+
Sbjct: 95 PDSAACNECVKLAKKRGFSKLSGFVNGVLR--TISRQKQEIPFP---DRNKDFVKYLSVA 149
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHE 286
S P W++R + + +EE + +V + +P + + +R +L+ L E
Sbjct: 150 CSMPEWIIRHFLRSYSEEET-ETIVSSFLEPKKTTVSWMESSGSREELIASLEKDGAKVE 208
Query: 287 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 346
L E +R+ + + + +EG VQDES+ L DP+ GQ I+D C+APGG
Sbjct: 209 DGKLLPEALRI-SHYDFLRRLTSFREGRFIVQDESSMLAGKAADPKEGQKILDMCSAPGG 267
Query: 347 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 406
K LY A L G G V A D+ + + +L E + + IRT D R + D
Sbjct: 268 KALYAADKLHGTGQVLARDLTEYKEELLKENIERVGFEN-IRTQIWDARIPDERLAESMD 326
Query: 407 KVLLDAPCSGLGVLSK 422
VL D PCSGLG++ K
Sbjct: 327 VVLCDVPCSGLGIMGK 342
>gi|257420431|ref|ZP_05597421.1| SUN protein [Enterococcus faecalis X98]
gi|422708017|ref|ZP_16765551.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0043]
gi|257162255|gb|EEU92215.1| SUN protein [Enterococcus faecalis X98]
gi|315154707|gb|EFT98723.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0043]
Length = 459
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 112/401 (27%), Positives = 196/401 (48%), Gaps = 45/401 (11%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ + R+ GGA+++LL NEM +L ++D RL T++V
Sbjct: 14 RYVALETIERVDKGGAYSNLLL--------NEM--------MTKSELSEKDGRLFTELVY 57
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI + L++ + K ++ + +L + Y+++ LD +P +AV++E V +
Sbjct: 58 GTISRKLLLEYYLTPFV---KKPQKVDNWVKNLLILSLYQLLYLDKVPDHAVINEAVEIG 114
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGN-DRAQARALATIYSHPVWMVRRWT 238
K PG G VNG+LR + N + L + DR LAT S P W+ +
Sbjct: 115 KRRGNPGIGKFVNGVLRAF---QRNGAPSLAAISDPVDR-----LATEISMPRWLTEKLL 166
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVK 298
LG+EE +L + S R N+R ++R + + +L + + S + +
Sbjct: 167 VQLGEEETRQLGLSLFEKSHASGRVNTR-FISREEALEELQETGIAAKESQLSPYGVVAE 225
Query: 299 TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 358
G + + L G +QDES+ LV + +P ++D CAAPGGKT ++A+ L +
Sbjct: 226 KGY--LAGSELFINGCLTIQDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAE 283
Query: 359 --GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAPCS 415
G V ++DI+ +++++NE A+ V V++ D R A+ + D++L+DAPCS
Sbjct: 284 AGGRVTSLDIHAHKIKLINENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAPCS 343
Query: 416 GLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
GLG++ R ++Y KT+ Q+L + + +L
Sbjct: 344 GLGLM----------RRKPDIKYHKTANDFQNLPKIQLEIL 374
>gi|19703658|ref|NP_603220.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gi|19713776|gb|AAL94519.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
Length = 435
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 152/321 (47%), Gaps = 20/321 (6%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F+T +++ ++ +T+I G IR +++LD++I ++ T + + +LRI Y+I
Sbjct: 28 FKTLNVNSKEKAFITEIFYGVIRNKKFLDYII-----EKNTKEIKKEWIRNLLRISIYQI 82
Query: 162 VKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
+D VV E LAK +NG LR + KD L L KL +
Sbjct: 83 TFMDSDDKGVVWEGTELAKKKYGIPISKFINGTLRNYLRNKD---LELKKL-----YDEK 134
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
+YS P W K G + + P S+R N K ++ + L
Sbjct: 135 NYEVLYSIPKWFYDILEKQYGDNNLKQAITSLKKIPYLSVRVNKLK---YSEEEFEEFLK 191
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
+ ++ +D V +GL +I + K G QD S+ L +D P + ++D C
Sbjct: 192 ERDIQIIKKIDTVYYVNSGL--IINSEEFKTGKIIAQDASSYLAAKNLDAMPNELVLDIC 249
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401
AAPGGKT +A + G + AIDI++ ++++++ K +++ +++ I D R +
Sbjct: 250 AAPGGKTAVLAENMKNMGEIIAIDIHQHKIKLIDTNMKKLRID-IVKAIVMDARN-VNKQ 307
Query: 402 TVKCDKVLLDAPCSGLGVLSK 422
K DK+L+D PCSG GV+ K
Sbjct: 308 GRKFDKILVDVPCSGYGVIRK 328
>gi|384083013|ref|ZP_09994188.1| 16S rRNA methyltransferase B [gamma proteobacterium HIMB30]
Length = 438
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 98/338 (28%), Positives = 158/338 (46%), Gaps = 30/338 (8%)
Query: 91 NEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLL 150
N+ ++ L TK+L D +L+ I G R +LD + L +K + + +L
Sbjct: 18 NQQSNLDALLRKHTKNLSPSDKKLLQSICYGICREWFHLDEIEAHLL--DKPLKARDQIL 75
Query: 151 LQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLP 210
I+R G YE+ + +AVV E V + A RP A L+N +LR+ + K
Sbjct: 76 SAIVRCGVYELGWMGSKEHAVVSEYVDVTLAAGRPWARGLINAVLRQFIRKKSE-----L 130
Query: 211 KLEGNDRAQARALATIYSHPVWMVR----RWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
K+E + + T+++HP W++ W Y Q ++V NN P +LR N R
Sbjct: 131 KMERHSKQ------TLWNHPTWLIDTIQDSWPDYWEQ-----ILVENNVHPPMTLRVN-R 178
Query: 267 KGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVV 326
R + L + H S + +R+ + V EGL +VQDES+
Sbjct: 179 TKTDRDTYIKSLESQGI-HAESGSSPDSVRLSEPMA-VQSLDGFAEGLVSVQDESSQWAS 236
Query: 327 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRL-RILNETAKLHQVNS 385
++DPQP + I+D CAAPGGKT ++ Q + A+D+++ RL RI +L
Sbjct: 237 IILDPQPNERILDACAAPGGKTCHLLEIADAQ--ITALDVSEQRLSRIKENLVRLGLRAD 294
Query: 386 VIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKT 423
+I + + ++ D D +LLD PCS GV+ +
Sbjct: 295 LIAADASHMGSWWDQKPF--DAILLDLPCSATGVIRRN 330
>gi|417936745|ref|ZP_12580052.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
infantis X]
gi|343400261|gb|EGV12781.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
infantis X]
Length = 437
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 99/319 (31%), Positives = 160/319 (50%), Gaps = 33/319 (10%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D LVT++V GT+ + L+ + D S L +L + Y++ LD +P +
Sbjct: 42 DKGLVTELVYGTVARKLTLEWYLSHFIEDRDKLDSW---LYVLLLMSVYQLQYLDKLPDH 98
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
AVV+E V LAK+ + G+ LVN +LR++ L++ LP + R R + YS
Sbjct: 99 AVVNEAVELAKLR-KKGSEKLVNAVLRRI--LREG----LPDITSIKRKNKRD-SIAYSL 150
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLV--MQLNLLKVPHEL 287
PVW+V + + G+E A + SL ++ + DL ++ L +
Sbjct: 151 PVWLVSKLKEEYGEERAQAIFE--------SLLQRNKASIRVTDLTRKEEIKALLDASDS 202
Query: 288 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 347
+L ++ + + L EGL +QDES+ LV +D Q + ++D CAAPGGK
Sbjct: 203 ALSASGLVKEQGHFAGL---DLFSEGLITIQDESSQLVAPTLDLQGEEQVLDACAAPGGK 259
Query: 348 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADNSTV 403
T +MAS L+ G V A+D+ +L ++ E A+ V ++T D R F N
Sbjct: 260 TAHMASYLT-TGQVTALDLYDHKLTLIQENAQRLGVADRVQTQKLDARKVHEFFGKN--- 315
Query: 404 KCDKVLLDAPCSGLGVLSK 422
+ DK+L+DAPCSG+G+L +
Sbjct: 316 QFDKILVDAPCSGIGLLRR 334
>gi|260588062|ref|ZP_05853975.1| ribosomal RNA small subunit methyltransferase B [Blautia hansenii
DSM 20583]
gi|260541589|gb|EEX22158.1| ribosomal RNA small subunit methyltransferase B [Blautia hansenii
DSM 20583]
Length = 454
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 100/346 (28%), Positives = 174/346 (50%), Gaps = 23/346 (6%)
Query: 81 LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDE 140
+NK+G+ S V R+ + + L+ ++ +T + GT+ ++ LD++ L +
Sbjct: 18 INKEGQHSH-----LVIRSTLEKYQYLEKQERAFLTRVCEGTLEYKLRLDYI--LDQYSS 70
Query: 141 KTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNL---VNGILR 196
M+P++ +ILR Y+++ +D +P AV DE V+LA+ + G NL VNG+LR
Sbjct: 71 VPVEKMKPVIREILRSSVYQLLYMDNVPDSAVCDEAVKLAR---KKGFYNLTGFVNGVLR 127
Query: 197 KLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSD 256
K+ ++ S+ P+ + L+ +YS P W+V ++ G E+ K++ ++
Sbjct: 128 KVA--REYGSIHFPEKD----QPVEYLSVLYSMPKWLVEKFLGEYGFEKTEKMLEAFLTE 181
Query: 257 PSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCA 316
++R V + ++ L KV E + +++ +K + + G
Sbjct: 182 KPTTIRIRQHL-VDKGAVLDSLKRQKVTVEPAPYVENAYYIK-DYDYLPALEAFRMGNIQ 239
Query: 317 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNE 376
VQD S+ LV V DP+ G ++D CAAPGGKTL +A L G G + A DI++ + ++ E
Sbjct: 240 VQDVSSMLVGEVADPKEGDYVIDLCAAPGGKTLCIADKLKGTGRIDARDISRTKTDLIRE 299
Query: 377 TAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
A +V+ T D S K D ++ D PCSGLGV+ K
Sbjct: 300 NAIRQNFLNVVVT-EKDATQLDSESFEKADILIADVPCSGLGVIGK 344
>gi|392388960|ref|YP_005907369.1| Sun family protein [Mycoplasma leachii 99/014/6]
gi|339276605|emb|CBV67184.1| Sun family protein [Mycoplasma leachii 99/014/6]
Length = 424
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/320 (28%), Positives = 165/320 (51%), Gaps = 23/320 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K+L+ +D V ++V G I + +LD+L+ L +KT ++ +LL I Y+++ L
Sbjct: 32 KNLNQQDKDFVFNLVHGVISNKIHLDYLLAKLIDVKKTSIDLQIILL----ISLYQMIYL 87
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
+ +P YA+V+E+V L K + A N +N IL K + KD LE N + L
Sbjct: 88 NSIPNYAIVNESVNLIKTTSQKQA-NFINAILNKFLRFKD------KYLEINLANKDLEL 140
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
++S + K ++ +++V N P +R N+ K +T L + + +
Sbjct: 141 CILHSFSYELYLMLIKQYDKDIVNQIVVNNQQIPKLYIRINTLK-ITSDQLFNKYKDIYL 199
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
+ +++ D I KT +I + L K G +QD+++ LV +++P ++D C+A
Sbjct: 200 LEKTNVN-DCLIANKT----IINSDLYKNGFITIQDKASILVSQILNPSLNAKVLDICSA 254
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV-IRTIHADLRTFADNST 402
PGGK +++ L G + A +IN+ +++++ E ++++N + I I+ D R
Sbjct: 255 PGGKLTHLSMILKNTGNIIANEINESKIKLIREN--INRLNCLNISVINMDARKIKQKQ- 311
Query: 403 VKCDKVLLDAPCSGLGVLSK 422
+ D +LLDAPCSG GV +
Sbjct: 312 -EFDYILLDAPCSGFGVFKR 330
>gi|312622710|ref|YP_004024323.1| sun protein [Caldicellulosiruptor kronotskyensis 2002]
gi|312203177|gb|ADQ46504.1| sun protein [Caldicellulosiruptor kronotskyensis 2002]
Length = 431
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/324 (27%), Positives = 158/324 (48%), Gaps = 16/324 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F K +++D L ++V G +R++ +D+ I + + +L ILR+ YE+
Sbjct: 29 FHQKLKNEKDRALFVELVHGVLRYKNLIDYYINFVAKK----GVKDKRILNILRVATYEL 84
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+ L+ +P YA V+E +A + P VN ILR ++ K+ L +++ D
Sbjct: 85 LFLEKIPEYATVNEACEIAS-KINPHLKAFVNAILRNIIRNKNQIEESLERIK--DVNYK 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
L+ S+P +++ + G E+ IK++ + N+ P S++ N++K L +L
Sbjct: 142 SYLSIKLSYPRFLIDYLEESYGLEKTIKILEFLNTKPPQSIKINTKKTNVNT-LTQELEK 200
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAV--VDPQPGQSIV 338
+E++ +E + + G N+ + L K+G QD ++ LVV D + + ++
Sbjct: 201 NGFKYEINSRNNEIVLILKG--NIKETELYKKGYFYFQDLASSLVVKSNQEDFERAKKVL 258
Query: 339 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398
D CAAPGGKT A + G V A DIN+ +L IL E +++I D F
Sbjct: 259 DLCAAPGGKTFNCAEVID--GFVVACDINEHKLDILRENILRLGFDNII-VAKNDAEVFN 315
Query: 399 DNSTVKCDKVLLDAPCSGLGVLSK 422
+ K D V+ D PC+G G + K
Sbjct: 316 PDFAEKFDIVIADLPCTGFGAIRK 339
>gi|419766946|ref|ZP_14293120.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
mitis SK579]
gi|383353590|gb|EID31196.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
mitis SK579]
Length = 437
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 100/317 (31%), Positives = 157/317 (49%), Gaps = 29/317 (9%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D LVT+IV GT+ + L+ + D S L +L + Y++ LD +P +
Sbjct: 42 DKGLVTEIVYGTVARKLTLEWYLSHFIEDRDQLDSW---LYVLLLMSAYQLRYLDKIPDH 98
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
AVV+E V LAKV + G+ LVN +LR++ L++ P + R R + YS
Sbjct: 99 AVVNEAVELAKVR-KKGSEKLVNAVLRRI--LREG----WPDIASIKRKNKRD-SIAYSL 150
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSL 289
PVW+V + + G+E A + S +R + VT ++ L + SL
Sbjct: 151 PVWLVSKLKEEYGEERAQAIF------ESLLVRNKASIRVTDLSRKEEIQALLEASDSSL 204
Query: 290 HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 349
+ ++ + L EG +QDES+ LV +D Q + ++D CAAPGGKT
Sbjct: 205 SVSGLVKEQGHFAG---HDLFAEGAITIQDESSQLVAPTLDLQGDEQVLDACAAPGGKTA 261
Query: 350 YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADNSTVKC 405
++AS L+ G V A+D+ +L ++ E A+ V ++T D R F NS
Sbjct: 262 HIASYLT-TGQVTALDLYDHKLDLIQENAQRLGVAERVQTQKLDARKVHELFGQNS---F 317
Query: 406 DKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG+G+L +
Sbjct: 318 DKILVDAPCSGIGLLRR 334
>gi|301642895|gb|ADK87996.1| At3est62-like protein [Arabidopsis halleri]
gi|301642901|gb|ADK87999.1| At3est62-like protein [Arabidopsis halleri]
gi|301642903|gb|ADK88000.1| At3est62-like protein [Arabidopsis halleri]
gi|301642919|gb|ADK88008.1| At3est62-like protein [Arabidopsis halleri]
gi|301642921|gb|ADK88009.1| At3est62-like protein [Arabidopsis halleri]
gi|301642923|gb|ADK88010.1| At3est62-like protein [Arabidopsis halleri]
gi|301642925|gb|ADK88011.1| At3est62-like protein [Arabidopsis halleri]
gi|301642927|gb|ADK88012.1| At3est62-like protein [Arabidopsis halleri]
gi|301642929|gb|ADK88013.1| At3est62-like protein [Arabidopsis halleri]
gi|301642931|gb|ADK88014.1| At3est62-like protein [Arabidopsis halleri]
gi|301642933|gb|ADK88015.1| At3est62-like protein [Arabidopsis halleri]
Length = 69
Score = 119 bits (298), Expect = 3e-24, Method: Composition-based stats.
Identities = 50/68 (73%), Positives = 63/68 (92%)
Query: 304 VIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYA 363
V+QAGLLKEG+C+VQDESAGL+V+VV PQPG+ I+D CAAPGGKTL+MASCL G G++YA
Sbjct: 2 VVQAGLLKEGICSVQDESAGLIVSVVKPQPGERIMDACAAPGGKTLFMASCLKGHGMIYA 61
Query: 364 IDINKGRL 371
+D+N+GRL
Sbjct: 62 MDVNEGRL 69
>gi|256384049|gb|ACU78619.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma
mycoides subsp. capri str. GM12]
gi|256384881|gb|ACU79450.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma
mycoides subsp. capri str. GM12]
gi|296455325|gb|ADH21560.1| ribosomal RNA small subunit methyltransferase B [synthetic
Mycoplasma mycoides JCVI-syn1.0]
Length = 419
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/323 (27%), Positives = 163/323 (50%), Gaps = 29/323 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K+L+ +D V ++V G I + +LD+L+ L +KT ++ +LL I Y+++ L
Sbjct: 31 KNLNQQDKDFVFNLVHGVISNKIHLDYLLGKLIDVKKTSIDLQIILL----ISLYQMIYL 86
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
+ +P YA+V+E++ L K + A N +N IL K + KD LE N + L
Sbjct: 87 NSIPNYAIVNESINLIKTTSQKQA-NFINAILNKFLRFKD------KYLEINLDNKDLEL 139
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
++S + K +E +++V N+ P +R N+ K +T L +
Sbjct: 140 CILHSFSYELYLMLIKQYDKEIVNQIVVNNHQIPKLYIRVNTLK-ITSDQLFNKYK---- 194
Query: 284 PHELSLHLDEFIRVKTGL---QNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
++L E VK L + +I + L K G +QD+++ LV +++P ++D
Sbjct: 195 ----DIYLLEKTNVKDCLIANKTIINSDLYKNGFITIQDKASILVSQILNPSLNTKVLDM 250
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV-IRTIHADLRTFAD 399
C+APGGK +++ L G + +IN+ +++++ E ++++N + I I+ D R
Sbjct: 251 CSAPGGKLTHLSMILKNTGNIVGNEINESKIKLIKEN--INRLNCLNISVINMDARKIKQ 308
Query: 400 NSTVKCDKVLLDAPCSGLGVLSK 422
+ D +LLDAPCSG GV +
Sbjct: 309 KQ--EFDYILLDAPCSGFGVFKR 329
>gi|425736791|ref|ZP_18855067.1| 16S rRNA methyltransferase B [Staphylococcus massiliensis S46]
gi|425483263|gb|EKU50415.1| 16S rRNA methyltransferase B [Staphylococcus massiliensis S46]
Length = 434
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 88/317 (27%), Positives = 159/317 (50%), Gaps = 24/317 (7%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D L T++V GT+ R LD+ + + ++ + Q+L + Y+ V L+
Sbjct: 35 LSSSDRGLYTELVYGTLARRYALDYFL-----KPHVNTRIKRWVRQLLWMSIYQYVYLNK 89
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLV--LLKDNNSLPLPKLEGNDRAQARAL 223
+P +A+++E V +AK GN+VN ILR L+ L + + PK + +
Sbjct: 90 IPNHAIINEAVEIAKARGGRHQGNVVNAILRSLMNHELASFDEIKDPK---------KRI 140
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
+ YS P+W++ WT + G ++ + ++R N + +T ++ QL
Sbjct: 141 SIEYSIPLWIIEHWTTHHGLDQTRDIAKAMLQSAPQTVRVNETR-ITPSEAKAQLETEGY 199
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
E L E + V + ++ +GL K G ++QD+S+ V V+ P+ G +I+D C+A
Sbjct: 200 QVETCDELPECLHVSG--KPIMTSGLFKAGKVSIQDKSSMFVANVLQPETGDAILDTCSA 257
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403
PGGK ++ L+ G V A D++ +++++ K + ++ H + + N T
Sbjct: 258 PGGKACHIGEKLNQTGHVLASDVHAHKMKLIEHNVKKLGLKNIEAIQHDATQPY--NQTF 315
Query: 404 KCDKVLLDAPCSGLGVL 420
DK+L+DAPCSGLGV+
Sbjct: 316 --DKILVDAPCSGLGVM 330
>gi|331703221|ref|YP_004399908.1| Sun family protein [Mycoplasma mycoides subsp. capri LC str. 95010]
gi|328801776|emb|CBW53929.1| Sun family protein [Mycoplasma mycoides subsp. capri LC str. 95010]
Length = 423
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 90/320 (28%), Positives = 165/320 (51%), Gaps = 23/320 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K+L+ +D V ++V G I + +LD+L+ L +KT ++ +LL I Y+++ L
Sbjct: 31 KNLNQQDKDFVFNLVHGVISNKIHLDYLLAKLIDVKKTSIDLQIILL----ISLYQMIYL 86
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
+ +P YA+V+E+V L K + A N +N IL K + KD LE N + L
Sbjct: 87 NSIPNYAIVNESVNLIKTTSQKQA-NFINAILNKFLRFKD------KYLEINLDNKDLEL 139
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
++S + K +E +++V N+ P +R N+ K +T L + + +
Sbjct: 140 CILHSFSYELYLMLIKQYDKEIVNQIVVNNHQIPKLYIRVNTLK-ITSDQLFNKYKDVYL 198
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
+ +++ D I KT +I + L K G +QD+++ LV +++P ++D C+A
Sbjct: 199 LEKTNVN-DCLIANKT----IINSDLYKNGFITIQDKASILVSQILNPSLNTKVLDMCSA 253
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV-IRTIHADLRTFADNST 402
PGGK +++ L G + A +IN+ +++++ E ++++N + I + D R
Sbjct: 254 PGGKLTHLSMILKNTGNIVANEINESKIKLIKEN--INRLNCLNISLTNMDARKIKQKQ- 310
Query: 403 VKCDKVLLDAPCSGLGVLSK 422
+ D +LLDAPCSG GV +
Sbjct: 311 -EFDYILLDAPCSGFGVFKR 329
>gi|365902831|ref|ZP_09440654.1| 16S rRNA methyltransferase B [Lactobacillus malefermentans KCTC
3548]
Length = 447
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 105/361 (29%), Positives = 168/361 (46%), Gaps = 49/361 (13%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D+ L+T IV G ++ R LD + K +EP + ++L ++ + LD +P
Sbjct: 41 DVNLLTTIVYGVVQHRLTLDFYLAPFL---KNPDKVEPWVRELLYTALFQELYLDRIPKR 97
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA----LAT 225
A+ +E + +AK G V G+L ++ D LP D A + L
Sbjct: 98 AIFNETIEIAKQRGHEGIRRFVTGVLHQM----DRTGLP-------DVATIKDPIERLVV 146
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
YS P W + G+E+A+ ++ N + S+R N+ + ++ D V +L
Sbjct: 147 TYSVPKWFINALIDQRGEEKALSILSKINQPANQSIRVNTVE-LSLDDAVRRLT------ 199
Query: 286 ELSLHLDEFIRVKTGL----QNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
E + E I TGL Q Q+ L K G +QDESA L + ++D C
Sbjct: 200 EEGFEVRESIVSGTGLVVSGQPANQSTLFKNGQVTIQDESAMLPAESMQLDDQMWVLDAC 259
Query: 342 AAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---- 395
AAPGGKT +A+ LS + G V A+DI+ +++++N+ AK V I + D R
Sbjct: 260 AAPGGKTTQIATYLSPEKGGKVTALDIHPHKIKLINQNAKRLHVQDQIEAVQLDARKVDE 319
Query: 396 TFADNSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLL 455
F D + D++L+DAPCSGLG++ R +RY K+ QHL + + +
Sbjct: 320 KFDDET---FDRILVDAPCSGLGLI----------RRKPEIRYEKSLSDSQHLQKVQLDI 366
Query: 456 L 456
L
Sbjct: 367 L 367
>gi|317059336|ref|ZP_07923821.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 3_1_5R]
gi|313685012|gb|EFS21847.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 3_1_5R]
Length = 440
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 87/326 (26%), Positives = 154/326 (47%), Gaps = 21/326 (6%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F K + +T++ G IR + YLD++I +K + L Q+ R+ FY+I
Sbjct: 28 FHRKVFKKGEKNFITEVFYGVIRNKIYLDYMIS-----QKVKEVKKDWLQQLFRLSFYQI 82
Query: 162 VKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
+ V+ E V LAK VNG+LR N + E N + + R
Sbjct: 83 RFMKSDDKGVIWEGVELAKKKYGVSVSRFVNGVLR-------NFQRSFIEEEENLKREGR 135
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
++S+P W + K E I+++ P S+R N K + L
Sbjct: 136 E-EVLFSYPKWFFEQ-IKKESPERYIEILKSLKRTPLLSVRVNLLKYSCEE---FEEYLR 190
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
K E+ ++ +K G N++ + +EG VQD ++ L + +PG+ ++D C
Sbjct: 191 KEEIEIIKKVETVYYMKAG--NLLNSSEFQEGKIIVQDAASYLAAKNLGAKPGEIVLDTC 248
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401
+APGGKT +A + +G + ++DI+ +++++ E K + ++++ + D R +
Sbjct: 249 SAPGGKTSVLAEAMKNEGQILSLDIHTHKIKLIQENCKKLGI-TIVQAVKLDARHLSLQG 307
Query: 402 TVKCDKVLLDAPCSGLGVLSKTCVGI 427
K D++L+DAPCSG GVL+K G+
Sbjct: 308 K-KFDRILVDAPCSGYGVLAKKPEGL 332
>gi|315917987|ref|ZP_07914227.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium gonidiaformans
ATCC 25563]
gi|313691862|gb|EFS28697.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium gonidiaformans
ATCC 25563]
Length = 440
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 87/326 (26%), Positives = 153/326 (46%), Gaps = 21/326 (6%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F K + +T++ G IR + YLD++I +K + L Q+ R+ FY+I
Sbjct: 28 FHRKVFKKGEKNFITEVFYGVIRNKIYLDYMIS-----QKVKEVKKDWLQQLFRLSFYQI 82
Query: 162 VKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
+ V+ E V LAK VNG+LR N + E N + + R
Sbjct: 83 RFMKSDDKGVIWEGVELAKKKYGVSVSRFVNGVLR-------NFQRSFIEEEENLKREGR 135
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
++S+P W + K E I+++ P S+R N K + L
Sbjct: 136 E-EVLFSYPKWFFEQ-IKKESPERYIEILKSLKRTPLLSVRVNLLKYSCEE---FEEYLR 190
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
K E+ ++ K G N++ + +EG VQD ++ L + +PG+ ++D C
Sbjct: 191 KEEIEIIKKVETIYYTKAG--NLLNSSEFQEGKIIVQDAASYLAAKNLGAKPGEIVLDTC 248
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401
+APGGKT +A + +G + ++DI+ +++++ E K + ++++ + D R +
Sbjct: 249 SAPGGKTSVLAEAMKNEGQILSLDIHTHKIKLIQENCKKLGI-TIVQAVKLDARHLSLQG 307
Query: 402 TVKCDKVLLDAPCSGLGVLSKTCVGI 427
K D++L+DAPCSG GVL+K G+
Sbjct: 308 K-KFDRILVDAPCSGYGVLAKKPEGL 332
>gi|259047043|ref|ZP_05737444.1| RNA methyltransferase Sun [Granulicatella adiacens ATCC 49175]
gi|259036093|gb|EEW37348.1| RNA methyltransferase Sun [Granulicatella adiacens ATCC 49175]
Length = 440
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 103/326 (31%), Positives = 159/326 (48%), Gaps = 30/326 (9%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD RD L+T++ GTI+ + LD + +K ME +L +LR+ Y++ LD
Sbjct: 35 LDVRDRGLLTELFYGTIQRKLTLDFYLKPFIEKQK---KMELWVLSLLRMTVYQMAYLDR 91
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGND-----RAQA 220
+P +A + E V++AK G VNG+LR + + G D + +
Sbjct: 92 VPDHAAIFEAVQIAKKRGHQGIAKFVNGVLRNV------------QRSGFDGVSSIKDER 139
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLR-ANSRKGVTRADLVMQLN 279
L+ +S P W+V + G E A ++ N P S R N V +++
Sbjct: 140 ERLSVEFSMPRWIVELLFEQYG-EVAREIFPSLNIAPHLSARIQNPEMSVEEVQTLLREE 198
Query: 280 LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 339
+ V E L I VK G +++ + K+G+ VQDES+ LV V Q G ++D
Sbjct: 199 GVMV-QESKLSPRAVI-VKEG--DLLGSKAFKDGIVTVQDESSSLVAQVGKLQHGDKVLD 254
Query: 340 CCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397
CAAPGGKT + AS L + GLV A+D+++ +LR +++ AK V I T D R
Sbjct: 255 TCAAPGGKTTHFASYLVAEEGGLVEALDLHENKLRKIHQNAKRLGVEDRIHTHALDARKV 314
Query: 398 AD-NSTVKCDKVLLDAPCSGLGVLSK 422
+ D V +DAPCSGLG++ +
Sbjct: 315 GELFEKESFDAVFVDAPCSGLGLMRR 340
>gi|451344182|ref|ZP_21913242.1| ribosomal RNA small subunit methyltransferase B [Eggerthia
catenaformis OT 569 = DSM 20559]
gi|449336896|gb|EMD16064.1| ribosomal RNA small subunit methyltransferase B [Eggerthia
catenaformis OT 569 = DSM 20559]
Length = 413
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 156/310 (50%), Gaps = 27/310 (8%)
Query: 115 VTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDE 174
VT +V GTI+ +L++ + HD ++ +L + YE + +P YA+ DE
Sbjct: 41 VTVMVYGTIQNLLFLEYQL----HDLIQGKHVKVYERSLLLVSLYEYYYMHVPEYAIADE 96
Query: 175 NVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMV 234
+V++AK + AG +N +LR + PLP +D + ++ T SHP+WMV
Sbjct: 97 SVKIAKKKGQRTAG-FINAVLRHAF----KSQKPLP----DDDIEKISVET--SHPLWMV 145
Query: 235 RRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEF 294
+ + K G EE ++ + N P+ + R N+ K +T+ + + K E L D
Sbjct: 146 KMFIKQYGLEETRRICLANLQIPNRTARVNTLK-ITKEQFLKDYSDFK---EGLLSEDAV 201
Query: 295 IRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASC 354
I + N+ K+G +QDES+ L ++P+ +++D C APG KT ++A+
Sbjct: 202 IYNQG---NIAHTEAFKKGFITIQDESSQLPAKFLNPRENSTVLDMCGAPGSKTAHLAAL 258
Query: 355 LSGQGLVYAIDINKGRLRILNET-AKLHQVNSVIRTIH-ADLRTFADNSTVKCDKVLLDA 412
++ G + D+ + ++ ++ + +L N+ TIH D + K D +LLD
Sbjct: 259 MNNTGHIDVYDLYEHKIELIKKNITRLGVTNT---TIHCGDSTLLNEQINKKYDYILLDG 315
Query: 413 PCSGLGVLSK 422
PCSGLGVL++
Sbjct: 316 PCSGLGVLAR 325
>gi|340750427|ref|ZP_08687271.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
mortiferum ATCC 9817]
gi|229420063|gb|EEO35110.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
mortiferum ATCC 9817]
Length = 433
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 88/326 (26%), Positives = 152/326 (46%), Gaps = 30/326 (9%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F+ +L ++ +T++ G IR + +LD+ I D++T + + + ILRI Y+I
Sbjct: 28 FKENNLSKKERGFITELFYGVIRNKIFLDYEI-----DKRTTTIKKDWIRNILRISMYQI 82
Query: 162 VKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
++ V+ E LAK G +NG+LR S E +
Sbjct: 83 SFMNSDDKGVIWEATELAKKKFSVPVGKFINGVLR---------SYQREWQEDVKELKES 133
Query: 222 ALATIY-SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK----GVTRADLVM 276
IY S+P W + G+EE + P S R N K +
Sbjct: 134 GKNYIYLSYPEWFYNKLVSEYGEEEGELFLQSLKKIPYISFRVNRLKYSCEEFEKLLEEK 193
Query: 277 QLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 336
+++++K +D V +G+ ++ + ++G VQD S+ L ++P+P +S
Sbjct: 194 KIDIIK-------KVDSVYYVDSGI--LLYSDEFRDGKIIVQDASSYLSARNLNPKPDES 244
Query: 337 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396
++D C+APGGKT + + +G + A+DI +L+++ E V+ ++RT+ D R
Sbjct: 245 VLDTCSAPGGKTAVLGELMENRGELLALDIYPHKLKLIEENCHKCGVD-IVRTVKMDARK 303
Query: 397 FADNSTVKCDKVLLDAPCSGLGVLSK 422
+ K DK+L+DAPCSG GVL K
Sbjct: 304 LKEQGK-KFDKILVDAPCSGYGVLRK 328
>gi|331082369|ref|ZP_08331495.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
bacterium 6_1_63FAA]
gi|330400855|gb|EGG80456.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
bacterium 6_1_63FAA]
Length = 454
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 103/347 (29%), Positives = 175/347 (50%), Gaps = 25/347 (7%)
Query: 81 LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDE 140
+NK+G+ S V R+ + + L+ ++ +T + GT+ ++ LD++ L +
Sbjct: 18 INKEGQHSH-----LVIRSTLEKYQYLEKQERAFLTRVCEGTLEYKLRLDYI--LDQYSS 70
Query: 141 KTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNL---VNGILR 196
M+P++ +ILR Y+++ +D +P AV DE V+LA+ + G NL VNG+LR
Sbjct: 71 VPVEKMKPVIREILRSSVYQLLYMDNVPDSAVCDEAVKLAR---KKGFYNLTGFVNGVLR 127
Query: 197 KLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSD 256
K+ +D +S+ P E N + L+ +YS P W+V ++ G E+ K++ +
Sbjct: 128 KVA--RDYSSIHFP--EKNQPIEY--LSVLYSMPKWLVEKFLAEYGFEKTEKMLEAFLKE 181
Query: 257 PSFSLRANSRKGVTRADLVMQ-LNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLC 315
++R R+ + D V+ L V E + + + +K + + G
Sbjct: 182 KPTTIRI--RQHLVDKDAVLDSLKRQNVTVEPAPYAENAYYIK-NYDYLPALEAFRMGNI 238
Query: 316 AVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN 375
VQD S+ LV V DP+ G ++D CAAPGGKTL +A L G G + A DI++ + ++
Sbjct: 239 QVQDVSSMLVGEVADPKEGDYVIDLCAAPGGKTLCIADKLKGTGRIDARDISRTKTDLIR 298
Query: 376 ETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
E A +V+ + D S K D ++ D PCSGLGV+ K
Sbjct: 299 ENAIRQNFLNVVVS-EKDATQLDSESFEKADILIADVPCSGLGVIGK 344
>gi|222151048|ref|YP_002560202.1| hypothetical protein MCCL_0799 [Macrococcus caseolyticus JCSC5402]
gi|222120171|dbj|BAH17506.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 434
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 96/364 (26%), Positives = 179/364 (49%), Gaps = 38/364 (10%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R+V+ L + GA+++LL + + GYVE D L+T++V
Sbjct: 6 RSVALEILDAVLTEGAYSNLLINEAI-----KKGYVEPV-----------DRALLTELVY 49
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GT++ + L+ ++++ + +++ + Y+ V LD +P +A+++E V +
Sbjct: 50 GTLQRKLTLEFYAAPYIK-----TNIKGWMRRLILMSIYQSVYLDKVPDHAIINEAVEIT 104
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL-EGNDRAQARALATIYSHPVWMVRRWT 238
K G N VN ILR PL L E D + ++AT S P+W+++ W
Sbjct: 105 KRRGSMGGANTVNAILRNF------QRNPLRDLSEIKDDLKRLSVAT--STPLWLIKHWN 156
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVK 298
+ G + +++ + P ++R N+ K +T D + +L E S + E + +
Sbjct: 157 THFGFDTTLEMAEEFLNYPDTTVRVNTTK-ITPEDAIKRLTEAGYTVEQSEIIPECLTID 215
Query: 299 TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 358
++Q L K G +VQD S+ LV V+DPQP ++I+D C+APGGK ++A ++
Sbjct: 216 G--PPIVQHELFKHGFLSVQDASSMLVANVLDPQPDETILDACSAPGGKACHIAEKMNRT 273
Query: 359 GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLG 418
G + + D++ ++ ++ + + +R IH + + D+VL+DAPCSG G
Sbjct: 274 GHIDSHDVHPHKIDLI----QYNITRLSLRNIHPSVHDATIPYDKQYDRVLVDAPCSGFG 329
Query: 419 VLSK 422
V+ +
Sbjct: 330 VMKR 333
>gi|206891137|ref|YP_002248173.1| Sun protein [Thermodesulfovibrio yellowstonii DSM 11347]
gi|206743075|gb|ACI22132.1| Sun protein [Thermodesulfovibrio yellowstonii DSM 11347]
Length = 441
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 97/347 (27%), Positives = 155/347 (44%), Gaps = 60/347 (17%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQI---LRIGFYEIVK 163
D D + +++ G +R Y+D L+ E + S E L + LR Y++V
Sbjct: 36 FDKADRAFLLEVIYGVLRNLYYIDWLL------EDFYKSREKLSMYTINNLRCAIYQLVF 89
Query: 164 LDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
+ +P YAV +E V + K G N+VN ILR L+ + + ++ + + L
Sbjct: 90 MHIPAYAVANETVNVEKSF--NGKPNVVNAILRNF--LRKYQADEIFRITEQMQTDNKNL 145
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
+ +YSHP W++ RW K E L+ NN P ++
Sbjct: 146 SVVYSHPEWLITRWLKRFQLNEVKALLKANNEKPPITIAVK------------------- 186
Query: 284 PHELSLHLDEFIR--VKTGLQNVIQAGLLKEG--------------LCAVQDESAGLVVA 327
P E + + F + K + +GL+ EG VQDE++ LV
Sbjct: 187 PEERQMIGEYFTQKGFKVSFSKHVASGLIIEGQGYEIRKTLKESPFFWIVQDEASQLVCF 246
Query: 328 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET---AKLHQVN 384
+++P G I+D CA+PGGKTL + + L +G + I+ NK RL L E K +
Sbjct: 247 LLEPFEGACILDACASPGGKTL-LTAALIKKGTIICIENNKKRLENLQENIARVKKFLPD 305
Query: 385 SVIRTIHAD-----LRTFADN---STVKCDKVLLDAPCSGLGVLSKT 423
I+ I AD L+ D+ +T K D+++LDAPCS GV+ +
Sbjct: 306 VEIQPILADICQISLKKHLDSLGFNTHKFDRIILDAPCSSTGVIRRN 352
>gi|377831247|ref|ZP_09814228.1| rRNA methylase [Lactobacillus mucosae LM1]
gi|377554925|gb|EHT16623.1| rRNA methylase [Lactobacillus mucosae LM1]
Length = 448
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 96/332 (28%), Positives = 166/332 (50%), Gaps = 32/332 (9%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
++ L + D RL T++V G ++ + L++ + +K S ++ LLL + Y+
Sbjct: 35 LKSSQLSEVDKRLATNLVYGVLQHKLTLEYWLAPFIKGKKIESWVKTLLL----MSIYQY 90
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRA 218
LD +P +AV +E++ LAK PG V G+L ++ L D N++ P
Sbjct: 91 RYLDRVPDWAVTNESIELAKQLGNPGTRRFVTGVLHAVLRQGLGDVNAIEDP-------- 142
Query: 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKG-VTRADLVMQ 277
+ + +S P W+V K GQ A + N SLR N K + +A +++
Sbjct: 143 -IKRRSVEFSLPQWLVDELIKQYGQPTADAIFKAVNEPARVSLRVNEVKTTIPQAIAILK 201
Query: 278 LNLLKV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 336
++V P +++ + VK+G +V+ +GL +QDESA L V + P
Sbjct: 202 EQGVEVVPSQVA---KAGLVVKSG--DVVNTDSFMQGLVTIQDESAMLAVESMTINPADQ 256
Query: 337 IVDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 394
++D CAAPGGKT+ +A+ L + G V A+DI+ +++++ + A+ V + D
Sbjct: 257 VLDACAAPGGKTVQIAAALDEKQGGSVTALDIHAHKIKLIEKNAQRLGVAERVHACQLDA 316
Query: 395 R----TFADNSTVKCDKVLLDAPCSGLGVLSK 422
R F D + DK+L+DAPCSG+G+L +
Sbjct: 317 RKVDEKFEDG---QFDKILVDAPCSGIGLLRR 345
>gi|225028095|ref|ZP_03717287.1| hypothetical protein EUBHAL_02365 [Eubacterium hallii DSM 3353]
gi|224954565|gb|EEG35774.1| ribosomal RNA small subunit methyltransferase B [Eubacterium hallii
DSM 3353]
Length = 466
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 101/318 (31%), Positives = 158/318 (49%), Gaps = 23/318 (7%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKT-FSSMEPLLLQILRIGFYEIVKLDMPPY 169
D T + G + YLD++ L H KT +PL+ +LR+G Y+I+ +D+
Sbjct: 58 DRAFYTRLCEGVTERKIYLDYI---LDHYSKTPMKKCKPLIRSLLRMGAYQILFMDVRDA 114
Query: 170 AVVDENVRLAKVALRPGAGNL---VNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI 226
A E V LAK + G G L VNG+LR LV K+N LP+P + + + ++ I
Sbjct: 115 AACSEAVSLAK---KRGFGRLSGFVNGVLRTLVREKEN--LPVP----DKKDDVKYVSII 165
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHE 286
YS P W+ + + G+E A K+ ++R N K T +L +L V E
Sbjct: 166 YSVPEWLSKLIIEQYGKESAEKIFASFLEARPLTIRTNLSK-TTPEELEKELEEAGVKVE 224
Query: 287 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 346
+L + + L + + ++G AVQDES+ L VA+ D G ++D CAAPGG
Sbjct: 225 KGNYLPYAFTI-SNLNYLGKIAAFRQGKFAVQDESSQLAVAIADINEGDFVLDVCAAPGG 283
Query: 347 KTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHADLRTFADNSTVKC 405
KT + A L G G V + D+ + + ++ E ++H N ++ A D S ++
Sbjct: 284 KTFHAADRLKGAGKVLSRDLTEYKTELIEENKDRMHYENVEVQQWDA---LEEDESLLES 340
Query: 406 DKVLL-DAPCSGLGVLSK 422
VLL D PCSGLG++ +
Sbjct: 341 VDVLLADLPCSGLGIMGR 358
>gi|338530020|ref|YP_004663354.1| ribosomal RNA small subunit methyltransferase B [Myxococcus fulvus
HW-1]
gi|337256116|gb|AEI62276.1| ribosomal RNA small subunit methyltransferase B [Myxococcus fulvus
HW-1]
Length = 438
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 102/316 (32%), Positives = 149/316 (47%), Gaps = 17/316 (5%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMP 167
D RD LVT++ G R + LD+ I ++ ++E +L LRIG Y+I +P
Sbjct: 36 DPRDAALVTELAYGATRRQLALDYAIARFA--DRKLDALEDKVLAALRIGAYQIFHTRVP 93
Query: 168 PYAVVDENVR-LAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI 226
A V E V+ L +V L AG N ILRKL L P + A L+
Sbjct: 94 ARAAVAETVQALKEVGLTRAAG-FTNAILRKLADLPAPPLPPASDV-------ALHLSVR 145
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHE 286
SHP W+V RW + G+E A ++V +N P+ +RAN+ K VTR L+ QL + V +
Sbjct: 146 ESHPQWLVERWLRQFGRERAEAMLVADNQAPAVVVRANTAK-VTRDALLTQLQEMGVDAK 204
Query: 287 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 346
+ I + + V EGL VQDE+A LV ++D CAAPGG
Sbjct: 205 ATTVSPVGITLPP-VGRVEDVYGYAEGLWQVQDEAAQLVGVYGAIPESARVLDACAAPGG 263
Query: 347 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 406
K+ + A V A+D++ +LR ++ AK + ++ D +
Sbjct: 264 KSCHQAQSHD----VVAVDLHAHKLRKIDAEAKRLGLQPRLKAYAHDAAEPFPEEWGEFH 319
Query: 407 KVLLDAPCSGLGVLSK 422
L+DAPCSGLG L +
Sbjct: 320 AFLVDAPCSGLGTLRR 335
>gi|242373505|ref|ZP_04819079.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
M23864:W1]
gi|242348868|gb|EES40470.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
M23864:W1]
Length = 435
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 102/354 (28%), Positives = 174/354 (49%), Gaps = 44/354 (12%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVKLD-MP 167
D L T++V GTI+ + LD+++ K F + ++ + Q+L + Y+ V LD +P
Sbjct: 40 DRNLYTELVYGTIKRKYTLDYIL-------KPFVKTKIKGWMRQLLWMSIYQYVYLDKVP 92
Query: 168 PYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIY 227
+A+++E V +AK GN+VNGILR ++ + LP+ + + R +A Y
Sbjct: 93 DHAIINEAVDIAKHRGGYHNGNVVNGILRSIMRSE------LPQFDEIKDDKKR-IAIKY 145
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN-SRKGVTRADLVMQLNLLKVPHE 286
S P W+V W + G E + ++R N SR V ++ KV +
Sbjct: 146 SIPKWIVDHWVTHHGIETTEAIAQSFLEPVKTTVRVNISRGSVDSIVAELEKEGFKVEKD 205
Query: 287 ----LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
LH+ TG Q +I + K+G +VQD+S+ +V +++ ++D C+
Sbjct: 206 EILPFCLHI-------TG-QPIINSRAFKDGYVSVQDKSSMMVAHIMNLGRNDVVLDACS 257
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402
APGGK +MA LS +G V A DI+ ++ ++N K +++++ H + T
Sbjct: 258 APGGKACHMAEILSPEGHVDATDIHTHKIDLINFNIKKLKLDNISAFQHDATEPY----T 313
Query: 403 VKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
DK+L+DAPCSGLGVL R ++Y ++ +Q L E + +L
Sbjct: 314 RTYDKILVDAPCSGLGVL----------RHKPEIKYTQSKESIQSLVELQLQIL 357
>gi|418965584|ref|ZP_13517349.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
constellatus subsp. constellatus SK53]
gi|423069088|ref|ZP_17057876.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
intermedius F0395]
gi|355365488|gb|EHG13211.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
intermedius F0395]
gi|383342076|gb|EID20315.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
constellatus subsp. constellatus SK53]
Length = 437
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 163/318 (51%), Gaps = 31/318 (9%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D RLVT+IV GT+ + L+ + + D + S L +L + Y++ LD +P +
Sbjct: 43 DKRLVTEIVYGTVARKMTLEWYLSHVVEDREKLDSW---LYILLLMSLYQLQYLDKIPTH 99
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
AVV+E V L+K A + G+ VN +LR+L L+D + N R + YS
Sbjct: 100 AVVNEAVELSK-ARKKGSEKFVNAVLRRL--LRDGVADIASIKRKNKRYSIQ-----YSL 151
Query: 230 PVWMVRRWTKYLGQEEAIKLM--VWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHEL 287
PVW+V+ + G++ A+ + ++ + S + SRK + L + +LL P L
Sbjct: 152 PVWLVKVIIEEYGEKRALAIFESLFLRNKASVRVADLSRKEELKQLLQAEDSLL-APSAL 210
Query: 288 SLHLDEFIRVKTGLQNVIQAG--LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ F AG L +EG+ +QDES+ LV +D Q + ++D C+APG
Sbjct: 211 VKNHGHF------------AGHALFEEGVITIQDESSQLVAPTLDLQGDEKVLDACSAPG 258
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETA-KLHQVNSVIRTIHADLRTFADNSTVK 404
GKT+++AS L+ G V A+D+ +L ++ E A +L + VI R F
Sbjct: 259 GKTMHIASYLT-TGQVTALDLYDHKLTLIEENAQRLGLADRVITKKLDARRVFETFGVDA 317
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG+G++ +
Sbjct: 318 FDKILVDAPCSGIGLIRR 335
>gi|238921411|ref|YP_002934926.1| ribosomal RNA small subunit methyltransferase B, putative
[Edwardsiella ictaluri 93-146]
gi|238870980|gb|ACR70691.1| ribosomal RNA small subunit methyltransferase B, putative
[Edwardsiella ictaluri 93-146]
Length = 430
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 94/321 (29%), Positives = 161/321 (50%), Gaps = 24/321 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ L ++D L+ ++ GT+R L+ ++ L K + + L +L +G Y++V
Sbjct: 35 QSLSEKDRALLQELCFGTLRVLPQLEWILQQLM--AKVLTGKQRTLHYLLMVGLYQLVYT 92
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ + +L L Q++ A
Sbjct: 93 RIPPHAALAETVDGATALKRPQLKGLINGVLRQFQ--RQQEALLL---------QSQQHA 141
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA--DLVMQLNLLK 282
+ + HP W+++R ++ E+ ++ NN P LR N R A L+ Q +
Sbjct: 142 SHWLHPSWLLKR-LQHAYPEQWPAIVEANNQRPPMWLRVNRRHHTRDAYLTLLQQAGIEA 200
Query: 283 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
V H+ + + IR+ Q V + + G VQD SA V ++DPQ + I+D C
Sbjct: 201 VAHD---YFPDAIRLLVA-QPVTRLPGFEHGWVTVQDASAQHSVDLLDPQDSEQILDLCC 256
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NS 401
APGGKT ++ + + V A+D+++ RL+ + E + Q ++ IR D RT + S
Sbjct: 257 APGGKTTHILEA-APKAHVLAVDVDETRLKRVRENLQRLQQHAEIRC--GDGRTPDEWAS 313
Query: 402 TVKCDKVLLDAPCSGLGVLSK 422
+ D++LLDAPCS GV+ +
Sbjct: 314 GRQFDRILLDAPCSATGVIRR 334
>gi|417940054|ref|ZP_12583342.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
oralis SK313]
gi|343388935|gb|EGV01520.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
oralis SK313]
Length = 437
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 103/321 (32%), Positives = 164/321 (51%), Gaps = 37/321 (11%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D LVT+IV GT+ + L+ + D ++ L +L + Y++ LD +P +
Sbjct: 42 DKGLVTEIVYGTVARKLTLEWYLSHFIEDR---DKLDNWLYILLLLSAYQLRYLDKIPNH 98
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
AVV+E V LAK A + G+ LVN +LR++ L++ P ++ R R + YS
Sbjct: 99 AVVNEAVELAK-ARKKGSEKLVNAVLRRI--LREG----WPDIDSIKRKNKRD-SIAYSL 150
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSL 289
PVW+V + + G+E A + SL ++ + DL + + V L
Sbjct: 151 PVWLVSKLKEEYGEERAQAIFK--------SLLVRNKASIRVVDLSRKEEIKAV-----L 197
Query: 290 HLDEFIRVKTGL--QNVIQAG--LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ TGL ++ AG L EG+ +QDES+ LV +DPQ + ++D CAAPG
Sbjct: 198 EATDSPLAATGLVKEHGHFAGHDLFAEGVITIQDESSQLVAPTLDPQGDEQVLDACAAPG 257
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADNS 401
GKT ++AS L+ G V A+D+ +L ++ E A+ V ++T D R F +S
Sbjct: 258 GKTAHIASYLTS-GKVTALDLYDHKLDLIQENAERLGVADRVQTQKLDARKVHEFFGRDS 316
Query: 402 TVKCDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG+G+L +
Sbjct: 317 ---FDKILVDAPCSGIGLLRR 334
>gi|227904234|ref|ZP_04022039.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus
acidophilus ATCC 4796]
gi|227867882|gb|EEJ75303.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus
acidophilus ATCC 4796]
Length = 446
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 117/396 (29%), Positives = 188/396 (47%), Gaps = 61/396 (15%)
Query: 61 RAVSAVRLMRIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIV 119
RA+S L+++ G+++++ LN K S DL D L T IV
Sbjct: 11 RAISLETLIKVLGNGSYSNISLNNSLKNS-----------------DLAIADQNLATRIV 53
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRL 178
GTI++R +L++ + L + T ++PLLL + Y+I+ LD +P A++DE +L
Sbjct: 54 YGTIQYRIFLEYQLNGLIKTKLTEKYIKPLLL----MSLYQIIFLDKVPNRAILDEANKL 109
Query: 179 AKVALRPGAGN--LVNGILRKL----VLLKDNNSLPLPKLEGNDRAQARALATIYSHPVW 232
AK + + +VNGILR V+L D N+ + L+ S P W
Sbjct: 110 AKKFGKHHSSGYRIVNGILRSFIRRGVILPDKNN------------EIEYLSIKESVPEW 157
Query: 233 MVRRWTKYLGQEEAIKLMVWNNSDPSFSLR----ANSRKGVTRADLVMQLNLLKVPHELS 288
+V+ G E+ ++ N S+R ++ +K D N P+ +
Sbjct: 158 LVKYLISNWGIEKTKSVLSSINEPAKNSVRISMFSDKKKVFEELD-----NEGFNPNWSN 212
Query: 289 LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAV--VDPQPGQSIVDCCAAPGG 346
L ++ + G V Q+ L K G +QDE+A LVV D + ++D C+APGG
Sbjct: 213 LSANDIVLDHGG---VSQSNLFKSGNLTIQDEAASLVVEAFDFDKDKPEHVLDACSAPGG 269
Query: 347 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF-ADNSTVKC 405
KT+ +A G V A+DI++ +LR++ E AK V+ ++T D R A +
Sbjct: 270 KTVQLAESFKN-GTVTALDIHEKKLRLVKENAKRMHVSDKVKTQACDAREAQARFDAGEF 328
Query: 406 DKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKT 441
K+L+DAPCSGLG+L + + R KSL+ K
Sbjct: 329 TKILVDAPCSGLGLLRRKP----EIRYTKSLKDLKN 360
>gi|11499905|ref|NP_071149.1| fmu and fmv protein [Archaeoglobus fulgidus DSM 4304]
gi|2648195|gb|AAB88932.1| fmu and fmv protein [Archaeoglobus fulgidus DSM 4304]
Length = 437
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 134/281 (47%), Gaps = 27/281 (9%)
Query: 141 KTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL 200
K F ++P +LRI YE+ + P D VR+A+ G +LVN +LRK+
Sbjct: 73 KKFDGLDPFTRNLLRIAVYEMKYKGVHPALATDSAVRIAR---ERGKASLVNAVLRKV-- 127
Query: 201 LKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFS 260
KL+ + + L+ Y HP W V+ + LG++ A+KLM N +P
Sbjct: 128 ---------EKLDIQAEGRLKELSLTYFHPEWFVKYAIELLGEDGALKLMKANLRNPPTY 178
Query: 261 LRANSRKG-VTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQD 319
+R N KG V ++ N + + LDE RVK ++ EG +QD
Sbjct: 179 VRVNELKGSVESVREYLEKNGVILEETF---LDEVFRVKGYEKHPASLDWHSEGKYVIQD 235
Query: 320 ESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK 379
++ V ++P PG ++D AAPG KT +MA + +G + A+D + R+R + +K
Sbjct: 236 LASCFVSHALNPSPGDVVIDLAAAPGMKTAHMAMLMQNEGRIVAVDNSPSRVRRMR--SK 293
Query: 380 LHQVNSVIRTIHADLRTFADNSTVKC--DKVLLDAPCSGLG 418
L Q+ ++ + L D +C DK L+DAPCS G
Sbjct: 294 LKQLG--VKNVEIKL---GDGCVFECEADKALVDAPCSSTG 329
>gi|373452533|ref|ZP_09544446.1| ribosomal RNA small subunit methyltransferase B [Eubacterium sp.
3_1_31]
gi|371966402|gb|EHO83892.1| ribosomal RNA small subunit methyltransferase B [Eubacterium sp.
3_1_31]
Length = 415
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 97/334 (29%), Positives = 157/334 (47%), Gaps = 51/334 (15%)
Query: 105 KDLD---DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDE-----KTFSSMEPLLLQILRI 156
K+LD +D L+T IV GT++ R LC + + E +L L +
Sbjct: 27 KELDKAEQKDKGLITTIVYGTLQNYR--------LCRYQWEDLVQKLPKAETAVL--LDM 76
Query: 157 GFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGN 215
Y++ +D +P YA+++E V +AK G LVN +L K ++ + LP
Sbjct: 77 SAYQLFYMDKLPAYAIINEAVEIAKKHGGKKQGALVNAVLHK-IMQRGQRELP------K 129
Query: 216 DRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLV 275
D Q A+ T SHP W++ W G EE + + +N + +RK R
Sbjct: 130 DTLQKLAIKT--SHPDWLINMWKAQYG-EETCRAICESNME--------TRKQCAR---- 174
Query: 276 MQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGL-------LKEGLCAVQDESAGLVVAV 328
+NL+++ E L D +V G ++G+ ++QDE++ LV
Sbjct: 175 --VNLMRMSREEFLAQDNSFTAGQLASSVYYQGTSLAHTSWYEDGMLSIQDEASQLVAYC 232
Query: 329 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 388
VDPQP + I+D CAAPG K+ +MA + +G + DI++ R+ ++ + A Q++S I
Sbjct: 233 VDPQPKERILDVCAAPGTKSTHMAELMQDEGEIICGDIHEHRVELIQQGADRLQLHS-IH 291
Query: 389 TIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
+ D D+VL D PCSG GVL++
Sbjct: 292 PVVMDATKLQGLQEASFDRVLCDVPCSGYGVLAR 325
>gi|377809773|ref|YP_005004994.1| ribosomal RNA small subunit methyltransferase B [Pediococcus
claussenii ATCC BAA-344]
gi|361056514|gb|AEV95318.1| ribosomal RNA small subunit methyltransferase B [Pediococcus
claussenii ATCC BAA-344]
Length = 422
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 162/337 (48%), Gaps = 49/337 (14%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
DL D RL+T++V G ++ + LD+ + K ++ + +LR Y++ LD
Sbjct: 11 DLKVEDKRLITELVYGVLQNQLTLDYYLSPFL---KKPQKLQNWVRNLLRTAVYQMKYLD 67
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A+++E+ +AK G +V G+LR + +P + R L+
Sbjct: 68 RIPEFAILNESTEIAKKRGHDGIRRMVTGVLRSI------ERQGIPNVAAVSDPIER-LS 120
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANS--------RKGVTRADLVM 276
YS W++++ LGQ++ + ++ N+ S+R N+ KG+ + +
Sbjct: 121 VEYSVKKWIIKQLINELGQKKTVSILKSINTPSKLSIRVNTVLSTTEKVTKGLEKEGFSV 180
Query: 277 Q--------LNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAV 328
+ L L +VP+ LS ++ L ++G QDESA LV V
Sbjct: 181 ERSQVGSEGLILERVPYSLS-----------------RSELFQKGDIIAQDESAMLVAEV 223
Query: 329 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 388
+D + G ++D CAAPGGKT +A + G V A DI+ RL ++ + A+ Q++ I
Sbjct: 224 MDVKDGMKVLDACAAPGGKTTQIAEYVGQNGKVVAWDIHDHRLDLIKKNARRMQLSDRIE 283
Query: 389 TIHADLRTF---ADNSTVKCDKVLLDAPCSGLGVLSK 422
D DN+T D++L+DAPCSG+G+L +
Sbjct: 284 VEKQDASIVDDQYDNNTF--DRILVDAPCSGIGLLRR 318
>gi|304440678|ref|ZP_07400562.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus
duerdenii ATCC BAA-1640]
gi|304370865|gb|EFM24487.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus
duerdenii ATCC BAA-1640]
Length = 425
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 91/319 (28%), Positives = 157/319 (49%), Gaps = 28/319 (8%)
Query: 110 RDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPP 168
++ L+ +I G++R + YLD+LI + + F + + IL + Y+ + LD +P
Sbjct: 38 ENIALLRNITTGSLRNKTYLDYLIK--KNSKIRFKKIHEDIRIILEMSLYQYIFLDGIPD 95
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
Y +VDE V+L K G+ VNG+LR + KD L+G D R YS
Sbjct: 96 YTIVDEAVKLTKKVSHKGSVGFVNGLLRNFMRTKDFE----VDLKGKDYYLTR-----YS 146
Query: 229 HPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELS 288
P K +++ +++ NN+D +F++RAN K +TR +L+ L +
Sbjct: 147 VPEKYFDYLEKNYSKDKLEEILKLNNTDDNFTIRANFTK-LTRDELIKSLGV-------K 198
Query: 289 LHLDEFIRVKTGL-----QNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
++ + + K+G+ +++ + K G VQD + L+ +++P+ ++D CA
Sbjct: 199 YNVRKDMLTKSGIIVEDPKDIFKTDEFKNGKFYVQDSGSILISELLNPKEDSLVLDMCAN 258
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403
PGGKT ++ L+ G V A DI K + + +L N I T D + +
Sbjct: 259 PGGKTTHLLEILNKTGRVVAWDI-KDMVELRENAKRLGLSNLEIET--RDATIYDEKYNE 315
Query: 404 KCDKVLLDAPCSGLGVLSK 422
K D VLLDAPCS +G++ +
Sbjct: 316 KFDYVLLDAPCSAIGLIRR 334
>gi|242398901|ref|YP_002994325.1| TRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, fused to N-
terminal NusB regulator domain [Thermococcus sibiricus
MM 739]
gi|242265294|gb|ACS89976.1| TRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, fused to N-
terminal NusB regulator domain [Thermococcus sibiricus
MM 739]
Length = 450
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 101/360 (28%), Positives = 167/360 (46%), Gaps = 29/360 (8%)
Query: 68 LMRIQFGGAFADLLN--KKGKGSGDNEMGYVERTLG-FRTKDLDDRDLRLVTDIVGGTIR 124
+I F AD+L+ ++ + S N + ERT R KD +R L + +
Sbjct: 4 FYKINFHELIADILSLIEERELSSKNAL---ERTFKRVRGKD-RERARGLAHAYIFEIEK 59
Query: 125 WRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALR 184
W+R +D + + K ++P L +LRIG +E+ + P D VR K
Sbjct: 60 WKRKIDFIGNSVLKGIKI-EELDPYLANLLRIGIFEMKFKGVVPAIATDSIVRAVKDKYD 118
Query: 185 PGAGNLVNGILRKLVLLKDNNSLPLPK-LEG-NDRAQARALATIYSHPVWMVRRWTKYLG 242
+N +LR D S + K LE +R + L+ +SHP W V LG
Sbjct: 119 LSRAKFINAVLR------DVESFDVGKALEALRERDKIEYLSIKFSHPRWYVEYVIDLLG 172
Query: 243 QEEAIKLMVWNNSDPSFSLRANSRKGV--TRADLVMQ--LNLLKVPHELSLHLDEFIRVK 298
EE ++L++ NN + +R N K + +D + + + + + P +D+ ++V
Sbjct: 173 YEEGLRLLLSNNKPQRYYIRVNPLKTDIDSLSDYLEEHGVRVTRTP------VDDILKVL 226
Query: 299 TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 358
+ KEG +QD ++ V V+ P+ G+ ++D AAPG KT ++A +
Sbjct: 227 EYKTPITHLEGYKEGYFVIQDLASAYVAHVLSPEKGERVLDLAAAPGSKTFHVAQLMENT 286
Query: 359 GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLG 418
G + A+D + RLR + K+ V +V + +HAD F D K DK++LDAPCS G
Sbjct: 287 GEIIAVDYSLERLRKMETKMKILGVKNV-KLVHADGMKFKDMR--KFDKIILDAPCSSSG 343
>gi|445059863|ref|YP_007385267.1| 16S rRNA methyltransferase B [Staphylococcus warneri SG1]
gi|443425920|gb|AGC90823.1| 16S rRNA methyltransferase B [Staphylococcus warneri SG1]
Length = 435
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 96/359 (26%), Positives = 179/359 (49%), Gaps = 40/359 (11%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEI 161
T ++ D D L T++V GT++ + LD + K F + ++ + ++L + Y+
Sbjct: 33 TYEISDLDKGLFTELVYGTVKRKYTLDFYL-------KPFLKTKIKGWVRELLWMSIYQY 85
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
V LD +P +A+++E V +AK GN+VNGILR ++ + LP + +D+
Sbjct: 86 VYLDKVPDHAIINEAVEIAKEEGGYYTGNVVNGILRNIM----RSELPDVQDIQDDK--- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
+ +A YS P W+V W + G E+ + + ++RAN +G + D++ L
Sbjct: 139 KRIAIQYSLPKWLVDHWVTHYGLEQTEAIAQSFLEPVATTVRANITRG-SIDDIISALE- 196
Query: 281 LKVPHELSLHLDEFIR--VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 338
+ D+ + + + ++ + K+GL ++QD+S+ V ++D S++
Sbjct: 197 ---KESYIVDRDDVLPFCLHISGKPIVNSRAFKDGLVSIQDKSSMFVAHIMDLNRNDSVL 253
Query: 339 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN-ETAKLHQVNSVIRTIHADLRTF 397
D C+APGGK ++A LS +G V A DI+ ++++++ KL ++ I A
Sbjct: 254 DACSAPGGKACHIAEILSPEGHVDATDIHDHKIKLIDFNIRKLR-----LKNIEAYQHDA 308
Query: 398 ADNSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
+ + DK+L+DAPCSG GVL R ++Y ++ +Q L E + +L
Sbjct: 309 TEPYVTQYDKILVDAPCSGFGVL----------RHKPEIKYTQSKNSIQSLVELQLQIL 357
>gi|58337594|ref|YP_194179.1| rRNA methylase [Lactobacillus acidophilus NCFM]
gi|58254911|gb|AAV43148.1| rRNA methylase [Lactobacillus acidophilus NCFM]
Length = 455
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 117/396 (29%), Positives = 188/396 (47%), Gaps = 61/396 (15%)
Query: 61 RAVSAVRLMRIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIV 119
RA+S L+++ G+++++ LN K S DL D L T IV
Sbjct: 20 RAISLETLIKVLGNGSYSNISLNNSLKNS-----------------DLAIADQNLATRIV 62
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRL 178
GTI++R +L++ + L + T ++PLLL + Y+I+ LD +P A++DE +L
Sbjct: 63 YGTIQYRIFLEYQLNGLIKTKLTEKYIKPLLL----MSLYQIIFLDKVPNRAILDEANKL 118
Query: 179 AKVALRPGAGN--LVNGILRKL----VLLKDNNSLPLPKLEGNDRAQARALATIYSHPVW 232
AK + + +VNGILR V+L D N+ + L+ S P W
Sbjct: 119 AKKFGKHHSSGYRIVNGILRSFIRRGVILPDKNN------------EIEYLSIKESVPEW 166
Query: 233 MVRRWTKYLGQEEAIKLMVWNNSDPSFSLR----ANSRKGVTRADLVMQLNLLKVPHELS 288
+V+ G E+ ++ N S+R ++ +K D N P+ +
Sbjct: 167 LVKYLISNWGIEKTKSVLSSINEPAKNSVRISMFSDKKKVFEELD-----NEGFNPNWSN 221
Query: 289 LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAV--VDPQPGQSIVDCCAAPGG 346
L ++ + G V Q+ L K G +QDE+A LVV D + ++D C+APGG
Sbjct: 222 LSANDIVLDHGG---VSQSNLFKSGNLTIQDEAASLVVEAFDFDKDKPEHVLDACSAPGG 278
Query: 347 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF-ADNSTVKC 405
KT+ +A G V A+DI++ +LR++ E AK V+ ++T D R A +
Sbjct: 279 KTVQLAESFKN-GTVTALDIHEKKLRLVKENAKRMHVSDKVKTQACDAREAQARFDAGEF 337
Query: 406 DKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKT 441
K+L+DAPCSGLG+L + + R KSL+ K
Sbjct: 338 TKILVDAPCSGLGLLRRKP----EIRYTKSLKDLKN 369
>gi|366085800|ref|ZP_09452285.1| 16S rRNA methyltransferase B [Lactobacillus zeae KCTC 3804]
Length = 446
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 110/368 (29%), Positives = 175/368 (47%), Gaps = 56/368 (15%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD RD L+T+IV G I+ + LD+L+ + + ++P + +L+ Y++ LD
Sbjct: 37 LDSRDAGLLTNIVYGVIQHQLTLDYLLKPFVKNRQ----LDPWVRCLLQTAVYQLQYLDK 92
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKL--VLLKDNNSLPLPKLEGNDRAQARAL 223
+P AV ++ +AK G V G+LR+ D ++P P LE L
Sbjct: 93 VPARAVFFDSTEIAKQLGHQGIAKFVTGVLRQAQRTGFPDPATIPDP-LE--------RL 143
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
A S P+W+V++ + LG + ++ N S+R N+ K A LLK+
Sbjct: 144 AVTSSTPLWLVKKLQEQLGATKTASILAAINQPAHASIRVNTTKTTPDA-------LLKI 196
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLK------EGLCAVQDESAGLVVAVVDPQPGQSI 337
L E GL + G L G +QDES+ LV +D QPG ++
Sbjct: 197 LQPSFPELRESPLTPIGL--IAPGGHLAGTPEFAAGDYTMQDESSMLVAPSLDIQPGDAV 254
Query: 338 VDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETA-KLHQVNSV------IR 388
+D CAAPGGKT ++A L G V A+D++ ++R++ + A +L V+ V R
Sbjct: 255 LDACAAPGGKTTHIAQYLDPDQGGHVTALDLHANKIRLIQQNANRLGLVDRVSARMLDAR 314
Query: 389 TIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHL 448
+ A TFA S DK+L+DAPCSGLG++ R ++Y K + +HL
Sbjct: 315 QVDA---TFAPES---FDKILVDAPCSGLGLI----------RRKPEIKYTKQADDPRHL 358
Query: 449 CETKYLLL 456
+ + +L
Sbjct: 359 QQIQLAIL 366
>gi|313890028|ref|ZP_07823664.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pseudoporcinus SPIN 20026]
gi|416852116|ref|ZP_11909261.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pseudoporcinus LQ 940-04]
gi|313121619|gb|EFR44722.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pseudoporcinus SPIN 20026]
gi|356739605|gb|EHI64837.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pseudoporcinus LQ 940-04]
Length = 440
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 93/324 (28%), Positives = 167/324 (51%), Gaps = 33/324 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
+ D+D L+T+IV GTI + L+ + D + ++ + +L + Y+++ L+
Sbjct: 40 VQDKDKGLITEIVYGTIAKKITLEWYLSHYVEDRE---KLDKWVYYLLMLSLYQMLYLEK 96
Query: 166 MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A+V++ V +AK + GA +N ILR++ + LP L+ R R +
Sbjct: 97 IPSHAIVNDAVDIAKNRGYKRGAEKYINAILRQVSVGN------LPSLDSIKRKNKR-YS 149
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLM--VWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
YS P+W+V++ + G + AI +M + +S S + + R R L Q + L
Sbjct: 150 IAYSVPIWLVKKLCEQFGDDRAIAIMESLSFHSKASIRVTNSQRFDEVRDYLEAQTSAL- 208
Query: 283 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
P L+ F +EGL +QDE++ LV + + ++++D C+
Sbjct: 209 APTALTKTTGHFA----------SHAYFQEGLITIQDETSQLVAPTLAIKGDENVLDACS 258
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR----TFA 398
APGGKT ++AS L+ G + A+DI++ +L ++ + A+ V I T D R FA
Sbjct: 259 APGGKTCHLASYLT-TGKITALDIHEHKLTLVRQNAERLGVLDKIETRALDARKVHEVFA 317
Query: 399 DNSTVKCDKVLLDAPCSGLGVLSK 422
++S DK+L+DAPCSG+G++ +
Sbjct: 318 NDS---FDKILVDAPCSGIGLIRR 338
>gi|270293272|ref|ZP_06199483.1| sun protein [Streptococcus sp. M143]
gi|270279251|gb|EFA25097.1| sun protein [Streptococcus sp. M143]
Length = 437
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 109/332 (32%), Positives = 167/332 (50%), Gaps = 59/332 (17%)
Query: 111 DLRLVTDIVGGTI------RWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
D LVT+IV GT+ W YL H I + ++ L +L + Y++ L
Sbjct: 42 DKGLVTEIVYGTVARKLTLEW--YLSHFI-------EDRDKLDNWLYILLLLSAYQLRYL 92
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
D +P +AVV+E V LAK A + G+ LVN +LR++ L++ P ++ R R
Sbjct: 93 DKVPNHAVVNEAVELAK-ARKKGSEKLVNAVLRRI--LREG----WPDIDSIKRKNKRD- 144
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAI----KLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
+ YS PVW+V + + G+E A L+V N + S + SRK +A L +
Sbjct: 145 SIAYSLPVWLVSKLKEEYGEERAQAIFDSLLVRNKA--SIRVTDLSRKEEIKAVLEASDS 202
Query: 280 LLKVPHELSLHLDEFIRVKTGLQNVIQAG------LLKEGLCAVQDESAGLVVAVVDPQP 333
LL V +GL V + G L EG +QDES+ LV +D Q
Sbjct: 203 LLAV---------------SGL--VKEQGHFAGHDLFAEGAITIQDESSQLVAPTLDLQG 245
Query: 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD 393
+ ++D CAAPGGKT ++AS L+ G+V A+D+ +L ++ E A+ V ++T D
Sbjct: 246 DEQVLDACAAPGGKTAHIASYLTS-GMVTALDLYDHKLDLIQENAQRLGVADRVQTQKLD 304
Query: 394 LR---TFADNSTVKCDKVLLDAPCSGLGVLSK 422
R F + + DK+L+DAPCSG+G+L +
Sbjct: 305 ARKVHEFFEKDSF--DKILVDAPCSGIGLLRR 334
>gi|161507728|ref|YP_001577689.1| rRNA methylase [Lactobacillus helveticus DPC 4571]
gi|260101420|ref|ZP_05751657.1| RNA methyltransferase Sun [Lactobacillus helveticus DSM 20075]
gi|160348717|gb|ABX27391.1| rRNA methylase [Lactobacillus helveticus DPC 4571]
gi|260084760|gb|EEW68880.1| RNA methyltransferase Sun [Lactobacillus helveticus DSM 20075]
Length = 454
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 111/373 (29%), Positives = 187/373 (50%), Gaps = 50/373 (13%)
Query: 61 RAVSAVRLMRIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIV 119
RA+S L+++ G+++++ LN K S DL D L T IV
Sbjct: 20 RAISLETLIKVLQNGSYSNISLNNSLKHS-----------------DLSIADQNLATRIV 62
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRL 178
GTI++R +L++ + L + T ++PLLL + Y+I+ LD +P AV+DE +L
Sbjct: 63 YGTIQYRLFLEYQLTGLLKTKITEKYLKPLLL----MSLYQIIFLDKVPNRAVLDEANKL 118
Query: 179 AKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRR 236
AK + + +VNGILR + + LP +++ + L+ S P W+V+
Sbjct: 119 AKQFGKHHSSGYRVVNGILRAFI----RRGVILP----DEKDTIKYLSIKESVPEWLVKY 170
Query: 237 WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK----VPHELSLHLD 292
G ++A ++ N DP+ NS + + AD + LK P +L L+
Sbjct: 171 LIDNWGMQKAQSVLSSIN-DPA----KNSVRISSLADRNKVFDQLKKEGYQPEWSNLSLN 225
Query: 293 EFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS--IVDCCAAPGGKTLY 350
+ + G+ ++ L ++G +QDE+A LVV D Q+ ++D C+APGGKT+
Sbjct: 226 DAVLSHGGIS---ESDLFEQGKLIIQDEAASLVVEAFDFDQNQTEHVLDACSAPGGKTVQ 282
Query: 351 MASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCDKVL 409
+A + G V A+DI++ +LR++ E A+ V + T D R + + K+L
Sbjct: 283 IAENIHGD--VTALDIHEKKLRLVKENARRMHVLDKVTTKACDARKAHEIFKAGEFTKIL 340
Query: 410 LDAPCSGLGVLSK 422
+DAPCSGLG+L +
Sbjct: 341 VDAPCSGLGLLRR 353
>gi|418976154|ref|ZP_13524040.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
mitis SK575]
gi|383351828|gb|EID29591.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
mitis SK575]
Length = 437
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 100/317 (31%), Positives = 158/317 (49%), Gaps = 29/317 (9%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D LVT+IV GT+ + L+ + D S L +L + Y++ LD +P +
Sbjct: 42 DKGLVTEIVYGTVARKLTLEWYLSHFIEDRDQLDSW---LYVLLLMSAYQLRYLDKIPDH 98
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
AVV+E V LAKV + G+ LVN +LR++ L++ P ++ R R + YS
Sbjct: 99 AVVNEAVELAKVR-KKGSEKLVNAVLRRI--LREG----WPDIDNIKRKNKRD-SIAYSL 150
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSL 289
PVW+V R + G+E A + S +R + VT D ++ L + SL
Sbjct: 151 PVWLVARLKEEYGEERAQAIF------ESLLVRNKASIRVTDIDRKEEIQALLEASDSSL 204
Query: 290 HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 349
++ + L +G +QDES+ LV +D Q + ++D CAAPGGKT
Sbjct: 205 SPSGLVKEQGHFAG---HDLFADGAITIQDESSQLVAPTLDLQGDEQVLDACAAPGGKTA 261
Query: 350 YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADNSTVKC 405
++AS L+ G V A+D+ +L ++ E A+ V ++T D R F +S
Sbjct: 262 HIASYLT-IGQVTALDLYDHKLDLIQENAQRLGVADRVQTQKLDARKVHEFFGQDS---F 317
Query: 406 DKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG+G+L +
Sbjct: 318 DKILVDAPCSGIGLLRR 334
>gi|239626556|ref|ZP_04669587.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239516702|gb|EEQ56568.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 447
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 149/325 (45%), Gaps = 35/325 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD D +T + GT+ + +DH+I + M+PL+ +LR+ Y+I+ +D
Sbjct: 44 LDKSDRAFITRVTEGTLEYLLQIDHIIN--KYSRTKTDKMKPLIRNLLRMSVYQILYMDR 101
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P AV +E V+LA G VNG+LR + K + P L
Sbjct: 102 VPDSAVCNEAVKLAVKRRFTGLKGFVNGVLRTISREKASLVFDSPSLA------------ 149
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL-------VMQL 278
YS P WM W K G +A + D +R N + + A L VM
Sbjct: 150 -YSIPQWMYDMWEKEYGSAKAEMIAASFLEDRPTWVRCNLSRALREAILKSLDSQGVMVK 208
Query: 279 NLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 338
L +P L++ +++ QN G VQD ++ V + DP+ G I+
Sbjct: 209 ELDCLPSVLAISGYDYMEGLECFQN---------GWIQVQDATSAFVGELADPKEGDYII 259
Query: 339 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET-AKLHQVNSVIRTIHADLRTF 397
D CAAPGGK+L++A + G G+V A D++ + ++ E A+ N I+ + D
Sbjct: 260 DVCAAPGGKSLHLADKMKGTGMVEARDLSYQKTALIEENVARSGAAN--IKAVVWDALVP 317
Query: 398 ADNSTVKCDKVLLDAPCSGLGVLSK 422
+++ K D V+ D PCSGLG++ K
Sbjct: 318 DEDAREKADIVIADLPCSGLGIIGK 342
>gi|322388304|ref|ZP_08061908.1| RNA methyltransferase Sun [Streptococcus infantis ATCC 700779]
gi|419842399|ref|ZP_14365747.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
infantis ATCC 700779]
gi|321140976|gb|EFX36477.1| RNA methyltransferase Sun [Streptococcus infantis ATCC 700779]
gi|385703876|gb|EIG40978.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
infantis ATCC 700779]
Length = 437
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 100/320 (31%), Positives = 162/320 (50%), Gaps = 35/320 (10%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D LVT++V GT+ + L+ + D S L +L + Y++ LD +P +
Sbjct: 42 DKGLVTELVYGTVARKLTLEWYLSHFIEDRDKLDSW---LYILLLMSVYQLEYLDKLPDH 98
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
AVV+E+V +AK+ + G+ LVN +LR++ L++ LP + R R + YS
Sbjct: 99 AVVNESVEIAKLR-KKGSEKLVNAVLRRI--LREG----LPDIASIKRKNKRD-SIAYSL 150
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSL 289
PVW+V + + G+E A + SL ++ + DL + + K+ L
Sbjct: 151 PVWLVSKLKEEYGEERAQAIFE--------SLLQRNKASIRVTDLSRKEEIKKM-----L 197
Query: 290 HLDEFIRVKTGLQNVIQAG------LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
+ +GL V + G L EGL +QDES+ LV +D Q + ++D CAA
Sbjct: 198 DASDSALSASGL--VKEQGHFAGHDLFSEGLITIQDESSQLVTPTLDLQGEEQVLDACAA 255
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NST 402
PGGKT +MAS L+ G V A+D+ +L ++ E A+ V ++T D R +
Sbjct: 256 PGGKTAHMASYLT-TGQVTALDLYDHKLTLIQENAERLGVADRVQTQKLDARKVHEFFGK 314
Query: 403 VKCDKVLLDAPCSGLGVLSK 422
+ DK+L+DAPCSG+G+L +
Sbjct: 315 DQFDKILVDAPCSGIGLLRR 334
>gi|229162801|ref|ZP_04290758.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
R309803]
gi|228620683|gb|EEK77552.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
R309803]
Length = 360
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 133/259 (51%), Gaps = 14/259 (5%)
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL-EGNDRAQARALA 224
+P A + E V +AK G +VNG+LR + +P + E D + A+A
Sbjct: 7 VPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSI------QREGVPSVDEIKDPVERLAIA 60
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
T SHPVW+V+ W E A K+ N P + R N K VT + + L +
Sbjct: 61 T--SHPVWLVQEWASEYDLETAGKMCEINMLPPVPTARVNVDK-VTVEEAIELLASEGIE 117
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
+ D+ I+++ G NV K+G ++QDES+ LV ++P G ++D CAAP
Sbjct: 118 AKRGDLSDDAIQIERG--NVAHTDAFKKGFLSIQDESSMLVARALEPNEGDVVLDSCAAP 175
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-STV 403
GGKT ++A L G G V ++D++ ++R++ + A + +V T D R ++ +
Sbjct: 176 GGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQADRLGLENV-ETKALDARKVQEHFANE 234
Query: 404 KCDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG GV+ +
Sbjct: 235 TFDKILVDAPCSGFGVIRR 253
>gi|307710617|ref|ZP_07647051.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
mitis SK564]
gi|307618662|gb|EFN97804.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
mitis SK564]
Length = 437
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 100/317 (31%), Positives = 158/317 (49%), Gaps = 29/317 (9%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D LVT+IV GT+ + L+ + D S L +L + Y++ LD +P +
Sbjct: 42 DKGLVTEIVYGTVARKLTLEWYLSHFIEDRDQLDSW---LYVLLLMSAYQLRYLDKIPDH 98
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
AVV+E V LAKV + G+ LVN +LR++ L++ P ++ R R + YS
Sbjct: 99 AVVNEAVELAKVR-KKGSEKLVNAVLRRI--LREG----WPDIDNIKRKNKRD-SIAYSL 150
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSL 289
PVW+V R + G+E A + S +R + VT D ++ L + SL
Sbjct: 151 PVWLVARLKEEYGEERAQAIF------ESLLVRNKASIRVTDIDRKEEIQALLEASDSSL 204
Query: 290 HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 349
++ + L +G +QDES+ LV +D Q + ++D CAAPGGKT
Sbjct: 205 SPSGLVKEQGHFAG---HDLFADGAITIQDESSQLVAPTLDLQGDEQVLDACAAPGGKTA 261
Query: 350 YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADNSTVKC 405
++AS L+ G V A+D+ +L ++ E A+ V ++T D R F +S
Sbjct: 262 HIASYLT-IGQVTALDLYDHKLDLIQENAQRLGVADRVQTQKLDARKVHEFFGQDS---F 317
Query: 406 DKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG+G+L +
Sbjct: 318 DKILVDAPCSGIGLLRR 334
>gi|294638022|ref|ZP_06716282.1| ribosomal RNA small subunit methyltransferase B [Edwardsiella tarda
ATCC 23685]
gi|451967545|ref|ZP_21920784.1| 16S rRNA methyltransferase RsmB [Edwardsiella tarda NBRC 105688]
gi|291088814|gb|EFE21375.1| ribosomal RNA small subunit methyltransferase B [Edwardsiella tarda
ATCC 23685]
gi|451313644|dbj|GAC66146.1| 16S rRNA methyltransferase RsmB [Edwardsiella tarda NBRC 105688]
Length = 430
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 159/322 (49%), Gaps = 24/322 (7%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
+ L ++D L+ ++ GT+R L+ ++ L K + + L +L +G Y++V
Sbjct: 34 AQSLSEKDRALLQELCFGTLRVLPQLEWILQQLM--AKALTGKQRPLHYLLMVGLYQLVY 91
Query: 164 LDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
+PP+A + E V A RP L+NG+LR+ + +L L Q++
Sbjct: 92 TRIPPHAALAETVDGATALKRPQLKGLINGVLRQFQ--RQQEALLL---------QSQQH 140
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA--DLVMQLNLL 281
A+ + HP W+++R ++ E+ ++ NN P LR N R A L+ Q +
Sbjct: 141 ASHWLHPSWLLKR-LQHAYPEQWPAIVEANNQRPPMWLRVNRRHHTRDAYLTLLQQAGIE 199
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
V H+ H + IR+ Q V + + G VQD SA V ++DP G+ I+D C
Sbjct: 200 AVAHD---HFPDAIRLLVA-QPVTRLPGFEHGWVTVQDASAQHCVDLLDPHDGEQILDLC 255
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF-ADN 400
APGGKT ++ + + V A+D ++ RL+ + E + Q + +R D RT A
Sbjct: 256 CAPGGKTTHILEA-APKAQVLAVDADEQRLKRVRENLQRLQQQAEVRC--GDGRTPDAWA 312
Query: 401 STVKCDKVLLDAPCSGLGVLSK 422
+ + D++LLDAPCS GV+ +
Sbjct: 313 NGRQFDRILLDAPCSATGVIRR 334
>gi|424779926|ref|ZP_18206812.1| Ribosomal RNA small subunit methyltransferase B [Catellicoccus
marimammalium M35/04/3]
gi|422843465|gb|EKU27902.1| Ribosomal RNA small subunit methyltransferase B [Catellicoccus
marimammalium M35/04/3]
Length = 452
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 117/398 (29%), Positives = 192/398 (48%), Gaps = 64/398 (16%)
Query: 38 TKKRAKVSP----SRRTQNLNLEVSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEM 93
+KK KVSP + R Q L + L+R++ A+++L+ KK K
Sbjct: 2 SKKERKVSPELEKTVRYQALEI------------LLRVRKNQAYSNLMIKKAK------- 42
Query: 94 GYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQI 153
++++D L+ ++V GTI R L++++ +K ++ + ++
Sbjct: 43 -------------VEEKDRALLAELVYGTISRRYTLEYILSPFIQGKK----VQDWVQEL 85
Query: 154 LRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLP 210
L + Y+++ LD +P +AVVDE+V++AK PG G VNG+LR L+ LKD ++ P
Sbjct: 86 LLLALYQLLFLDRVPNHAVVDESVKIAKEKGNPGIGKFVNGVLRNLLRSDLKDPRAIQDP 145
Query: 211 KLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVT 270
L+ +YS P +V G++EA L+ + S R R+
Sbjct: 146 ---------IERLSIMYSVPKDLVSLIVDQYGKKEAEDLLASLLTPSHASARLTKRED-D 195
Query: 271 RADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVD 330
R D + L + S + I TG ++ + KEG +QDES+ LV +
Sbjct: 196 REDCLETLKKEGFSVKESPVSPDGIIAATG--HLAGSKAFKEGRITIQDESSMLVAPALQ 253
Query: 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIR 388
+P ++D CAAPGGKT ++AS L G V A+DI++ + ++ ETA V +
Sbjct: 254 VEPQHQVLDACAAPGGKTGHIASYLDATQGGKVTALDIHQHKCELIEETAARLHVTDRVT 313
Query: 389 TIHADLR----TFADNSTVKCDKVLLDAPCSGLGVLSK 422
D R TFA S D++L+DAPCSGLG++ +
Sbjct: 314 AQTLDARKVGDTFAKES---FDRILVDAPCSGLGLMRR 348
>gi|385840289|ref|YP_005863613.1| 16S ribosomal RNA m(5)C 967 methyltransferase [Lactobacillus
salivarius CECT 5713]
gi|300214410|gb|ADJ78826.1| 16S ribosomal RNA m(5)C 967 methyltransferase [Lactobacillus
salivarius CECT 5713]
Length = 445
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 160/315 (50%), Gaps = 18/315 (5%)
Query: 110 RDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPP 168
+D +L+T IV G I+ + L++ + K + ++ + ++L + Y++V LD +P
Sbjct: 40 KDTKLLTTIVYGVIQHKLTLEYWLEPFI---KKANKLQLWVKELLLVSLYQMVYLDKIPD 96
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
AV +E++ +AK+ G V G+L + N L ND +L+ S
Sbjct: 97 RAVFNESIEIAKIKGHTGIRKFVTGVLHSI----RRNGLREVNEIDND---ITSLSIGTS 149
Query: 229 HPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL-NLLKVPHEL 287
P W+V K LG + ++ N+ P S+R N+ K V + LV +L N E
Sbjct: 150 TPEWLVEELIKELGITKVESILDTINTSPKHSVRINTHK-VNKQILVNELKNDGYTIRES 208
Query: 288 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 347
+ D I V G + ++ + G +QDESA L V +D Q ++D CAAPGGK
Sbjct: 209 EVTPDALI-VDGGF--LPKSSEFRNGKMIIQDESAMLAVESMDIQKDDIVLDACAAPGGK 265
Query: 348 TLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR-TFADNSTVKC 405
T +A L G+G V+A+DI+K +++++ E A + S + D R + + K
Sbjct: 266 TTQIAEKLMKGEGKVWALDIHKHKVKLIEENANKLGLISKVSAKQLDARKAITEFDSEKF 325
Query: 406 DKVLLDAPCSGLGVL 420
DK+L+DAPCSGLG++
Sbjct: 326 DKILVDAPCSGLGLM 340
>gi|392428262|ref|YP_006469273.1| rRNA methylase [Streptococcus intermedius JTH08]
gi|419777713|ref|ZP_14303623.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
intermedius SK54]
gi|383844737|gb|EID82149.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
intermedius SK54]
gi|391757408|dbj|BAM23025.1| rRNA methylase [Streptococcus intermedius JTH08]
Length = 437
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 102/324 (31%), Positives = 161/324 (49%), Gaps = 35/324 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D LVT+IV GT+ + L+ + + D + S +LL + Y+I LD
Sbjct: 39 LSSADQALVTEIVYGTVARKMTLEWYLSHVIKDREKLDSWVYILL---LLSLYQIHYLDK 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +AVV+E LAK A + G+ VN +LR L L+D + + G R R +
Sbjct: 96 IPAHAVVNEAAELAK-ARKKGSEKFVNAVLRGL--LRDG----VADIAGIKRKNKR-YSV 147
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
YS PVW+V+ + G+ A+ + S LR ++ + DL K
Sbjct: 148 QYSLPVWLVKVLIEEYGETRALAIF------ESLFLR--NKASIRVVDL-------KCKE 192
Query: 286 ELS--LHLDEFIRVKTGL----QNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 339
EL L ++ + T L + L ++G +QDES+ LV ++D Q + ++D
Sbjct: 193 ELKERLQAEDSLLAPTALVKSHDHFASHYLFEKGAITIQDESSQLVAPIMDVQGDEKVLD 252
Query: 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 399
C+APGGKT ++AS L+ G V A+D+ +LR++ E AK V + T D R +
Sbjct: 253 ACSAPGGKTTHIASYLT-TGQVIALDLYDHKLRLIEENAKRLDVADRVITKKLDARRVFE 311
Query: 400 NSTVKC-DKVLLDAPCSGLGVLSK 422
V DK+L+DAPCSG+G++ +
Sbjct: 312 TFGVDAFDKILVDAPCSGIGLIRR 335
>gi|419783366|ref|ZP_14309154.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
oralis SK610]
gi|383182250|gb|EIC74808.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
oralis SK610]
Length = 437
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 104/323 (32%), Positives = 162/323 (50%), Gaps = 41/323 (12%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D LVT+IV GT+ + L+ + D ++ L +L + Y++ LD +P +
Sbjct: 42 DKGLVTEIVYGTVARKLTLEWYLSHFIQDR---DKLDNWLYILLLLSAYQLRYLDKIPNH 98
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
AVV+E V LAK A + G+ LVN +LR++ L++ P ++ R R + YS
Sbjct: 99 AVVNEAVELAK-ARKKGSEKLVNAVLRRI--LREG----WPDIDSIKRKNKRD-SIAYSL 150
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSL 289
PVW+V + + G+E A + SL ++ + ADL + + V L
Sbjct: 151 PVWLVSKLKEEYGEERAQAIFK--------SLLVRNKASIRVADLSRKEEIKAV-----L 197
Query: 290 HLDEFIRVKTGLQNVIQAG------LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
+ TGL V + G L EG +QDES+ LV +D Q + ++D CAA
Sbjct: 198 EATDSPLAATGL--VKEQGHFAGHDLFAEGAITIQDESSQLVAPTLDLQGDEQVLDACAA 255
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FAD 399
PGGKT +MAS L+ G V A+D+ +L ++ E A+ V ++T D R F
Sbjct: 256 PGGKTAHMASYLTS-GKVTALDLYDHKLDLIQENAERLGVADQVQTQKLDARKVHEFFGR 314
Query: 400 NSTVKCDKVLLDAPCSGLGVLSK 422
+S DK+L+DAPCSG+G+L +
Sbjct: 315 DS---FDKILVDAPCSGIGLLRR 334
>gi|357053205|ref|ZP_09114305.1| ribosomal RNA small subunit methyltransferase B [Clostridium
clostridioforme 2_1_49FAA]
gi|355385972|gb|EHG33016.1| ribosomal RNA small subunit methyltransferase B [Clostridium
clostridioforme 2_1_49FAA]
Length = 455
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/315 (29%), Positives = 145/315 (46%), Gaps = 23/315 (7%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D +T V GT+ + +D +I + + M+P + +LR+ Y+I+ +D +P
Sbjct: 47 DRSFITRAVEGTLEYLIQIDEVINR--YSKTKIYKMKPFIRSLLRMSVYQILYMDRVPDS 104
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
AV +E V+LA G VNG+LR + K+ + P L YS
Sbjct: 105 AVCNEAVKLAVKRHFSGLKGFVNGVLRTISREKEKLTFDTPSLR-------------YSI 151
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHEL-- 287
P WM W K G+E+A K+ D +R N + RAD L LK L
Sbjct: 152 PEWMYAMWEKEFGKEKAGKIAASFLEDKPTWVRCN----LHRADRERILASLKAQGTLVR 207
Query: 288 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 347
L E + G + ++G VQD ++ V + P+ G I+D CAAPGGK
Sbjct: 208 ELPFMESMIAIDGYDYLEGLDAFRKGWIQVQDVTSAFVGEIASPEKGSYIIDVCAAPGGK 267
Query: 348 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 407
+L++A L G G+V A D+ + ++ E V + ++T+ D ++ K D
Sbjct: 268 SLHLADKLRGTGMVEARDLTYQKTALIEENMARCGVTN-MKTLVWDALEPDPSAAGKADI 326
Query: 408 VLLDAPCSGLGVLSK 422
V+ D PCSGLG++ +
Sbjct: 327 VIADLPCSGLGIIGR 341
>gi|325261900|ref|ZP_08128638.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
D5]
gi|324033354|gb|EGB94631.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
D5]
Length = 451
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 156/320 (48%), Gaps = 20/320 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
LD ++ +T + GT+ LD+++ M+P++ ILR Y++ +D
Sbjct: 39 LDKKERAFITRVTEGTLEHLMELDYILGQFSK--VKVKKMKPVIRNILRSAVYQLKYMDS 96
Query: 166 MPPYAVVDENVRLAKVALRPGAGNL---VNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
+P AV +E V+LA ++ G G+L VNG+LR + D P L A
Sbjct: 97 VPDSAVCNEAVKLA---VKKGFGSLRGFVNGVLRNVARGLDTVEYPKDALA--------A 145
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
L+ YS P W++++W +E ++ + ++R N + + +L +L
Sbjct: 146 LSVRYSMPEWILKKWLTEYDRETVETMLADFQKEKPVTIRCNINRCLPE-ELEARLESEG 204
Query: 283 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
V L+L R+ TG + +EGL AVQD S+ LV + DP+ G I+D CA
Sbjct: 205 VKAVRHLYLPYAYRI-TGYDYLGDMESFREGLFAVQDVSSMLVGEIADPKQGDYIIDVCA 263
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402
APGGK++++A LSG G V A D+ + + ++ + Q+ + I + D S
Sbjct: 264 APGGKSIHLADRLSGTGHVDARDLTEYKTSLIRDNIDRMQMKN-ISAVQMDASVLDAASV 322
Query: 403 VKCDKVLLDAPCSGLGVLSK 422
K D V+ D PCSGLGVL +
Sbjct: 323 EKADIVIADLPCSGLGVLGR 342
>gi|418008220|ref|ZP_12648088.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
casei UW4]
gi|410547164|gb|EKQ21402.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
casei UW4]
Length = 446
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 110/372 (29%), Positives = 172/372 (46%), Gaps = 36/372 (9%)
Query: 94 GYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLL 151
GY TL + L RD L+T+IV G I+ + LD + K ++ +
Sbjct: 22 GYSNLTLDHVINSHKLTPRDAGLLTNIVYGVIQHQLTLDFYLAPFIKGRK----LDNWIR 77
Query: 152 QILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLP 210
+L Y++ LD +P AV ++ +AK G V G+LR P P
Sbjct: 78 CLLDTAVYQLQYLDKVPARAVFFDSTEIAKKLGHQGIAKFVTGVLRN----AQRTGFPDP 133
Query: 211 KLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVT 270
+ + L+ S PVW+V + T LG+ + ++ N+ SLR N+ K +T
Sbjct: 134 AAIAD---PVKRLSIESSTPVWLVEKLTAQLGEPKTRAILNVINAPAHASLRVNTTK-IT 189
Query: 271 RADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVD 330
A L+ L + P L + G + +K G +QDES+ LV +D
Sbjct: 190 AAALLASLQP-EFPDLKESPLTPVGLIAPGGHLAGTSAFVK-GEYTMQDESSMLVAPSLD 247
Query: 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIR 388
QPG +++D CAAPGGKT ++A L + G V A+D++ ++R++N+ AK + I
Sbjct: 248 IQPGDAVLDACAAPGGKTTHIAQYLDPKQGGQVTALDLHANKVRLINKNAKRLGLTDRIH 307
Query: 389 TIHADLR----TFADNSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFL 444
D R TF+ NS DK+L+DAPCSGLG++ R ++Y KT
Sbjct: 308 AQVLDARKVATTFSANS---FDKILVDAPCSGLGLI----------RRKPEIKYTKTPED 354
Query: 445 MQHLCETKYLLL 456
HL + + +L
Sbjct: 355 PAHLQQIQLAIL 366
>gi|417788134|ref|ZP_12435817.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
salivarius NIAS840]
gi|417810422|ref|ZP_12457101.1| 16S rRNA m(5)C methyltransferase [Lactobacillus salivarius GJ-24]
gi|418961222|ref|ZP_13513109.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus salivarius
SMXD51]
gi|334308311|gb|EGL99297.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
salivarius NIAS840]
gi|335349218|gb|EGM50718.1| 16S rRNA m(5)C methyltransferase [Lactobacillus salivarius GJ-24]
gi|380344889|gb|EIA33235.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus salivarius
SMXD51]
Length = 445
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 98/321 (30%), Positives = 164/321 (51%), Gaps = 18/321 (5%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L +D +L+T IV G I+ + L++ + K + ++ + ++L + Y++V LD
Sbjct: 36 NLSVKDTKLLTTIVYGVIQHKLTLEYWLEPFI---KKANRLQLWVKELLLVSLYQMVYLD 92
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P AV +E++ +AK+ G V G+L + N L ND + L+
Sbjct: 93 KIPDRAVFNESIEIAKIKGHTGIRKFVTGVLHSI----RRNGLREVNEIDNDITR---LS 145
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL-NLLKV 283
S P W+V K LG + ++ N+ P S+R N+ K V + LV +L N
Sbjct: 146 IGTSTPEWLVEELIKELGITKVESILDTINTSPKHSVRINTHK-VNKQILVNELKNDGYT 204
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
E + D I V G + ++ + G +QDESA L V +D Q ++D CAA
Sbjct: 205 IRESEVTPDALI-VDGGF--LPKSSEFRNGKMIIQDESAMLAVESMDIQEDDIVLDACAA 261
Query: 344 PGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR-TFADNS 401
PGGKT +A L +G+G V+A+DI+K +++++ E A + S + D R +
Sbjct: 262 PGGKTTQIAEKLMTGEGKVWALDIHKHKVKLIEENANKLGLISKVSAKQLDARKAITEFD 321
Query: 402 TVKCDKVLLDAPCSGLGVLSK 422
+ K DK+L+DAPCSGLG++ +
Sbjct: 322 SEKFDKILVDAPCSGLGLMRR 342
>gi|239636304|ref|ZP_04677306.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
warneri L37603]
gi|239597659|gb|EEQ80154.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
warneri L37603]
Length = 435
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/358 (25%), Positives = 182/358 (50%), Gaps = 38/358 (10%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEI 161
T ++ D D L T++V GT++ + LD + K F + ++ + ++L + Y+
Sbjct: 33 TYEISDLDKGLFTELVYGTVKRKYTLDFYL-------KPFLKTKIKGWVRELLWMSIYQY 85
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
V LD +P +A+++E V +AK GN+VNGILR ++ + LP K +D+
Sbjct: 86 VYLDKVPNHAIINEAVEIAKEEGGYYTGNVVNGILRTIM----RSELPDVKDIQDDK--- 138
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
+ +A YS P W+V W + G E+ + + ++RAN +TR + ++
Sbjct: 139 KRIAIQYSLPKWLVDHWVTHYGLEQTEAIAQSFLEPVATTVRAN----ITRGSIDNIISA 194
Query: 281 LKVPHELSLHLDEFIR--VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 338
L+ ++ D+ + + + ++ + K+GL ++QD+S+ V ++ S++
Sbjct: 195 LE-KENYTVERDDVLPFCLHISGKPIVNSRAFKDGLVSIQDKSSMFVAHIMGLNRDDSVL 253
Query: 339 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398
D C+APGGK ++A LS +G V A DI+ ++++++ + ++ ++ H + +
Sbjct: 254 DACSAPGGKACHIAEILSPEGHVDATDIHDHKIKLIDFNIRKLRLKNIKAYQHDATKPYN 313
Query: 399 DNSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
+ + DK+L+DAPCSG GVL R ++Y ++ +Q L E + +L
Sbjct: 314 N----QYDKILVDAPCSGFGVL----------RHKPEIKYTQSKNSIQSLVELQLQIL 357
>gi|116073315|ref|ZP_01470577.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp.
RS9916]
gi|116068620|gb|EAU74372.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp.
RS9916]
Length = 456
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 108/340 (31%), Positives = 162/340 (47%), Gaps = 33/340 (9%)
Query: 96 VERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILR 155
+ER L R + L D LVT++ G IR RR+LD + L + P L +L
Sbjct: 46 LERAL--RGQQLSGPDRGLVTELAYGAIRQRRWLDGWLDRL--GKVPARKQPPRLRWLLH 101
Query: 156 IGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNL---VNGILRKLVLLKD-NNSLPLP 210
+G Y+++ ++ +P A V+ +V LAK R G L VNG+LR + ++ L LP
Sbjct: 102 VGLYQLLCMERIPAAAAVNTSVELAK---RHGLNRLAPVVNGLLRGALRAQEAGEQLTLP 158
Query: 211 KLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVT 270
+D A LA S P W ++ ++ G E+A ++ N PS LR N +
Sbjct: 159 ----DD--PALRLALQQSLPDWFCQQLQQWCGPEQAERVAQACNQVPSLDLRVNRLRSTP 212
Query: 271 RADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKE------GLCAVQDESAGL 324
A + + L + GLQ + G L++ G VQD +A
Sbjct: 213 EA-------VKAALEDAGLTVVAIPECPDGLQVLSHGGDLRQWPGYDDGHWCVQDRAAQW 265
Query: 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 384
V ++ PQPG ++D CAAPGGK ++A + QG V+AID + GRL+ + A N
Sbjct: 266 VAPLLAPQPGDRVLDACAAPGGKATHLAELMGDQGEVWAIDRSAGRLQRVAANAARLGTN 325
Query: 385 SV--IRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
+ + ADL T ++LLDAPCSGLG L++
Sbjct: 326 CLQAMAADAADLLTLKPEWKGSFQRILLDAPCSGLGTLAR 365
>gi|167747881|ref|ZP_02420008.1| hypothetical protein ANACAC_02610 [Anaerostipes caccae DSM 14662]
gi|167652703|gb|EDR96832.1| ribosomal RNA small subunit methyltransferase B [Anaerostipes
caccae DSM 14662]
Length = 448
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 152/316 (48%), Gaps = 11/316 (3%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-M 166
+ +D T + GT+ R +D++I L + + M+PL+ +LR+G +I+ +D +
Sbjct: 37 EKKDRAFFTRLCQGTLERRLTIDYVIDL--YSKTKVRKMKPLVRSLLRMGACQILFMDHI 94
Query: 167 PPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI 226
P A +E V+LAK VNG+LR + + +P P ++ + L+
Sbjct: 95 PDSAACNECVKLAKKRGFSKLSGFVNGVLR--TISRQKQEIPFP---DRNKDFEKYLSVA 149
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHE 286
S P W++R + + + E + +V + +P + + +R +L+ L E
Sbjct: 150 CSMPEWIIRHFLRSYSEAET-ETIVSSFLEPKKTTVSWMESSGSREELIASLEKDGAKVE 208
Query: 287 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 346
L E +R+ + + + +EG VQDES+ L DP+ GQ I+D C+APGG
Sbjct: 209 DGKLLPEALRI-SHYDFLRRLTSFREGRFIVQDESSMLAGKAADPKEGQKILDMCSAPGG 267
Query: 347 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 406
K LY A L G G V A D+ + + +L E + + IRT D R + D
Sbjct: 268 KALYAADKLHGTGQVLARDLTEYKEELLKENIERVGFEN-IRTQIWDARIPDERLAESMD 326
Query: 407 KVLLDAPCSGLGVLSK 422
VL D PCSGLG++ K
Sbjct: 327 VVLCDVPCSGLGIMGK 342
>gi|328957299|ref|YP_004374685.1| ribosomal RNA small subunit methyltransferase B [Carnobacterium sp.
17-4]
gi|328673623|gb|AEB29669.1| ribosomal RNA small subunit methyltransferase B [Carnobacterium sp.
17-4]
Length = 458
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/320 (28%), Positives = 158/320 (49%), Gaps = 25/320 (7%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D RL+T++V G ++ + LD + +++K ++ + +LR+ Y+++ LD +P +
Sbjct: 51 DARLLTELVYGVLQRKLTLDFYLSPFLNEDK---KIDIWVRNLLRLSIYQMIYLDKIPVH 107
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
A++ E V +AK G +NG+LR D N P +E R L+ S
Sbjct: 108 AILFEAVEVAKKKGHVGISKFINGVLRN----ADRNGFP--SVEKIADPIER-LSIELSM 160
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSL 289
P W+V ++T +G EE KL LR + + L+ E
Sbjct: 161 PRWLVEKFTADIGLEETKKL-------GESLLRPSHSSARVNEKFLTVEEALEAMEEEGF 213
Query: 290 HLDEFIRVKTGL----QNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
+ E + G+ + + L + G +QDES+ LV + +P ++D CAAPG
Sbjct: 214 DVRESVISPVGIVSDGGHFASSPLFQSGQLTIQDESSQLVAPALQLEPHHQVLDACAAPG 273
Query: 346 GKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF-ADNST 402
GKT ++AS LS + G V A+D+++ ++ ++ E AK V V+ + D R + S
Sbjct: 274 GKTTHIASYLSAEEGGKVTALDLHEHKVALITENAKRMHVEDVVTAMKLDARNVDQEFSD 333
Query: 403 VKCDKVLLDAPCSGLGVLSK 422
+ D++L+DAPCSGLG++ +
Sbjct: 334 EQFDRILVDAPCSGLGLMRR 353
>gi|403514778|ref|YP_006655598.1| 16S rRNA methyltransferase B [Lactobacillus helveticus R0052]
gi|403080216|gb|AFR21794.1| 16S rRNA methyltransferase B [Lactobacillus helveticus R0052]
Length = 442
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 111/373 (29%), Positives = 186/373 (49%), Gaps = 50/373 (13%)
Query: 61 RAVSAVRLMRIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIV 119
RA+S L+++ G+++++ LN K S DL D L T IV
Sbjct: 8 RAISLETLIKVLQNGSYSNISLNNSLKHS-----------------DLSIADQNLATRIV 50
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRL 178
GTI++R ++++ + L + T ++PLLL + Y+I+ LD +P AV+DE +L
Sbjct: 51 YGTIQYRLFVEYQLTGLLKTKITEKYLKPLLL----MSLYQIIFLDKVPNRAVLDEANKL 106
Query: 179 AKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRR 236
AK + + +VNGILR + + LP +++ + L+ S P W+V+
Sbjct: 107 AKQFGKHHSSGYRVVNGILRAFI----RRGVILP----DEKDTTKYLSIKESVPEWLVKY 158
Query: 237 WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK----VPHELSLHLD 292
G ++A ++ N DP+ NS + + AD + LK P +L L+
Sbjct: 159 LIDNWGMQKAQSVLSSIN-DPA----KNSVRISSLADRNKVFDQLKKEGYQPEWSNLSLN 213
Query: 293 EFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS--IVDCCAAPGGKTLY 350
+ + G+ + L ++G +QDE+A LVV D Q+ ++D C+APGGKT+
Sbjct: 214 DAVLNHGGIS---ENDLFEQGKLTIQDEAASLVVEAFDFDQNQTEHVLDACSAPGGKTVQ 270
Query: 351 MASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCDKVL 409
+A + G V A+DI++ +LR++ E A+ V + T D R + K K+L
Sbjct: 271 IAENIHGD--VTALDIHEKKLRLVKENARRMHVLDKVTTKACDARKAHEIFKAGKFTKIL 328
Query: 410 LDAPCSGLGVLSK 422
+DAPCSGLG+L +
Sbjct: 329 VDAPCSGLGLLRR 341
>gi|315651135|ref|ZP_07904167.1| rRNA (cytosine-5-)-methyltransferase [Lachnoanaerobaculum saburreum
DSM 3986]
gi|315486600|gb|EFU76950.1| rRNA (cytosine-5-)-methyltransferase [Lachnoanaerobaculum saburreum
DSM 3986]
Length = 444
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/316 (27%), Positives = 156/316 (49%), Gaps = 29/316 (9%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSS---MEPLLLQILRIGFYEIVKLD-M 166
D + +V G + +R LD +I K ++ ++P++ +ILR+ Y+I+ +D +
Sbjct: 42 DRGFFSKVVHGVVEYRLQLDFII-------KKYNGGKRIKPVIREILRMAIYQILYMDRV 94
Query: 167 PPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI 226
P A+++E V L K+ VNGILRK+ K+ S D R
Sbjct: 95 PDRAIINEAVNLVKLRRLTALTGFVNGILRKISSEKETVSF--------DNIGIR----- 141
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHE 286
YS P +++ + G+ L + P S+R N+ K D+V +L + E
Sbjct: 142 YSMPEFLLDIIKENTGKYFDKTLEYFLEGRP-VSIRVNTSKSKV-TDVVKELEESNIRAE 199
Query: 287 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 346
S D + ++ G V ++K G C + D S+ ++ ++ P + ++D CAAPGG
Sbjct: 200 RSSLNDAVLYIR-GFDKVDDISVIKSGKCYITDVSSSMIAELIIPDNIKKVLDVCAAPGG 258
Query: 347 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 406
K+ +A + + L+Y+ DI++ ++ ++ E AK+ ++I + AD R F + + D
Sbjct: 259 KSFLLADKIDNEALIYSCDISENKVNLITENAKVQGFKNIIPLV-ADARVF-NERFAESD 316
Query: 407 KVLLDAPCSGLGVLSK 422
V+ D PCSG+G++ K
Sbjct: 317 LVVADLPCSGIGIIGK 332
>gi|223043738|ref|ZP_03613781.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
capitis SK14]
gi|417907062|ref|ZP_12550838.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
capitis VCU116]
gi|222442835|gb|EEE48937.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
capitis SK14]
gi|341596693|gb|EGS39284.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
capitis VCU116]
Length = 435
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/321 (28%), Positives = 167/321 (52%), Gaps = 36/321 (11%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF--SSMEPLLLQILRIGFYEIVKLD- 165
D D L T++V GTI+ + LD+++ K F + ++ + Q+L + Y+ V LD
Sbjct: 38 DVDRNLFTELVYGTIKRKYTLDYIL-------KPFVKTKIKGWVRQLLWMSIYQYVYLDK 90
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +A+++E V +AK GN+VNGILR ++ + LP + +D+ + +A
Sbjct: 91 VPDHAIINEAVDIAKQRGGHHNGNIVNGILRSMM----RSELPHFQEIKDDK---KRIAL 143
Query: 226 IYSHPVWMVRRWTKYLG----QEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
YS P W+V W + G +E A L+ + ++RAN +G + D++ +L
Sbjct: 144 EYSLPKWLVNHWVTHYGLVTTEEIAQSLL----APVKTTVRANISRG-SVDDIINKLE-- 196
Query: 282 KVPHELSLHLDEFIR--VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 339
++ D+ + + Q ++ + K+G ++QD+S+ +V ++ ++D
Sbjct: 197 --NEGFNVEKDDILPFCLHVSGQTIVNSRAFKDGYVSIQDKSSMMVAHIMKLGRDDKVLD 254
Query: 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 399
C+APGGK +MA LS +G + A DI+ ++ ++ K ++++ IHA +
Sbjct: 255 ACSAPGGKACHMAEILSPEGQIDATDIHSHKIDLIKHNIKKLKLDN----IHAFQHDATE 310
Query: 400 NSTVKCDKVLLDAPCSGLGVL 420
DK+L+DAPCSGLGVL
Sbjct: 311 PYDGLYDKILVDAPCSGLGVL 331
>gi|385813567|ref|YP_005849960.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus helveticus
H10]
gi|323466286|gb|ADX69973.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus helveticus
H10]
Length = 448
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 186/373 (49%), Gaps = 50/373 (13%)
Query: 61 RAVSAVRLMRIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIV 119
RA+S L+++ G+++++ LN K S DL D L T IV
Sbjct: 14 RAISLETLIKVLQNGSYSNISLNNSLKHS-----------------DLSIADQNLATRIV 56
Query: 120 GGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRL 178
GTI++R + ++ + L + T ++PLLL + Y+I+ LD +P AV+DE +L
Sbjct: 57 YGTIQYRLFFEYQLTGLLKTKITEKYLKPLLL----MSLYQIIFLDKVPNRAVLDEANKL 112
Query: 179 AKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRR 236
AK + + +VNGILR + + LP +++ + L+ S P W+V+
Sbjct: 113 AKQFGKHHSSGYRVVNGILRAFI----RRGVILP----DEKDTIKYLSIKESVPEWLVKY 164
Query: 237 WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK----VPHELSLHLD 292
G ++A ++ N DP+ NS + + AD + LK P +L L+
Sbjct: 165 LIDNWGMQKAQSVLSSIN-DPA----KNSVRISSLADRNKVFDQLKKEGYQPEWSNLSLN 219
Query: 293 EFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS--IVDCCAAPGGKTLY 350
+ + G+ ++ L ++G +QDE+A LVV D Q+ ++D C+APGGKT+
Sbjct: 220 DAVLSHGGIS---ESDLFEQGKLTIQDEAASLVVEAFDFDQNQTEHVLDACSAPGGKTVQ 276
Query: 351 MASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCDKVL 409
+A + G V A+DI++ +LR++ E A+ V + T D R + + K+L
Sbjct: 277 IAENIHGD--VTALDIHEKKLRLVKENARRMHVLDKVTTKACDARKAHEIFKAGEFTKIL 334
Query: 410 LDAPCSGLGVLSK 422
+DAPCSGLG+L +
Sbjct: 335 VDAPCSGLGLLRR 347
>gi|385260165|ref|ZP_10038314.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp.
SK140]
gi|385192085|gb|EIF39495.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp.
SK140]
Length = 437
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 161/318 (50%), Gaps = 31/318 (9%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D LVT++V GT+ + L+ I D S L +L + Y++ LD +P +
Sbjct: 42 DKGLVTELVYGTVARKLTLEWYISHFIEDRDKLDSW---LYVLLLMSVYQLQYLDKIPDH 98
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
AVV+E V +AK A + G+ LVN +LR++ L++ LP++ R R + YS
Sbjct: 99 AVVNEAVEIAK-ARKKGSEKLVNAVLRRI--LREG----LPEIASIKRKNKRD-SIAYSL 150
Query: 230 PVWMVRRWTKYLGQE--EAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHEL 287
PVW++ + + G+E +AI + + S + SRK + L +LL P L
Sbjct: 151 PVWLISKLKEEYGEERAQAIFESLLQRNKASIRVTDLSRKEQIKTLLGASDSLLS-PAGL 209
Query: 288 SLHLDEFIRVKTGLQNVIQAG--LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
F AG L EG +QDES+ LV ++ Q + ++D CAAPG
Sbjct: 210 VKEQGHF------------AGHDLFAEGAITIQDESSQLVAPTLELQGDEQVLDACAAPG 257
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVK 404
GKT +MAS L+ G V A+D+ +L ++ E A+ V + ++T D R + +
Sbjct: 258 GKTAHMASYLT-TGQVTALDLYDHKLTLIQENAERLGVANRVQTQKLDARKVHEFFGKDQ 316
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG+G+L +
Sbjct: 317 FDKILVDAPCSGIGLLRR 334
>gi|306829015|ref|ZP_07462206.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
mitis ATCC 6249]
gi|304428820|gb|EFM31909.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
mitis ATCC 6249]
Length = 437
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 104/328 (31%), Positives = 163/328 (49%), Gaps = 51/328 (15%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D LVT+IV GT+ + L+ + D ++ L +L + Y++ LD +P +
Sbjct: 42 DKGLVTEIVYGTVARKLTLEWYLSHFIQDR---DKLDNWLYVLLLMSAYQVRFLDKVPDH 98
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
AVV+E V +AK A + G+ LVN +LR++ L++ P E R R + YS
Sbjct: 99 AVVNEAVEIAK-ARKKGSEKLVNAVLRRI--LREG----WPDFETIKRKNKRD-SIAYSL 150
Query: 230 PVWMVRRWTKYLGQEEAI----KLMVWNNSDPSFSLRANSRKGVTRADLVMQLN------ 279
PVW+V + + G+E A L+V N + S + SRK +A V++ N
Sbjct: 151 PVWLVSKLKEEYGEERAQAIFESLLVRNKA--SIRVTDLSRKEEIKA--VLEANDSPLAA 206
Query: 280 --LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 337
L+K + H L EG +QDES+ LV +D Q + +
Sbjct: 207 SGLVKEQGHFAGH-----------------DLFSEGAITIQDESSQLVAPTLDLQGDEQV 249
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR-- 395
+D CAAPGGKT++MAS L+ G V A+D+ +L ++ E A+ V ++T D R
Sbjct: 250 LDACAAPGGKTVHMASYLTS-GKVTALDLYDHKLDLIQENAQRLGVADRVQTQKLDARKV 308
Query: 396 -TFADNSTVKCDKVLLDAPCSGLGVLSK 422
F + + DK+L+DAPCSG+G+L +
Sbjct: 309 HEFFEKDSF--DKILVDAPCSGIGLLRR 334
>gi|91204618|emb|CAJ70846.1| conserved hypothetical protein [Candidatus Kuenenia
stuttgartiensis]
Length = 462
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 106/354 (29%), Positives = 159/354 (44%), Gaps = 44/354 (12%)
Query: 110 RDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPY 169
RD L+ ++V G R R LD ++ +EP LL LR+G Y+++ LD P+
Sbjct: 37 RDKHLLLELVNGITRHRLSLDTILSFFSKIPP--QKIEPWLLYALRLGIYQMIFLDKIPH 94
Query: 170 -AVVDENVRLAKVALR-PGAGNLVNGILR--------------------KLVLLKDN--N 205
A V+ +V L K +R P A N ILR KL+ K+N
Sbjct: 95 SAAVNTSVELVKNLIRRPDAARFANAILRAVDRTIKNKYSVNHKNVNQQKLLYKKENVWC 154
Query: 206 SLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANS 265
P +A YSHP W+++RW G ++ I++ NN P+ SLR N
Sbjct: 155 EFSEPIFPDPGENLTSYIAKNYSHPEWLIKRWLTRYGIDKTIEICKANNHIPTLSLRINH 214
Query: 266 RKGVTR--ADLVMQLNLL-KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESA 322
K A L+ Q +L +V +L +++ + V GL +VQD ++
Sbjct: 215 NKTSINEFASLLEQNGILARVIDNNALIINKSV--------VSDIPGFSNGLFSVQDITS 266
Query: 323 ---GLVVAVVDPQPGQ-SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA 378
G + P G +++D CAAPGGKT ++A + +G +YA+DI+ RL + E
Sbjct: 267 MKVGTFLIAETPTAGAITLLDMCAAPGGKTTHIAEIIQNKGSIYALDISLKRLHRVKENC 326
Query: 379 KLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWRI 432
+ + + I I D K D+VL D PCS GVLS+ WRI
Sbjct: 327 QRLGIKN-ITIICCDASEGKIPFRGKFDRVLADVPCSNTGVLSRRVE--ARWRI 377
>gi|419778102|ref|ZP_14304004.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
oralis SK10]
gi|383187855|gb|EIC80299.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
oralis SK10]
Length = 437
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 107/329 (32%), Positives = 163/329 (49%), Gaps = 53/329 (16%)
Query: 111 DLRLVTDIVGGTI------RWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
D LVT+IV GT+ W YL H I + ++ L +L + Y++ L
Sbjct: 42 DKGLVTEIVYGTVARKLTLEW--YLSHFI-------QDRDKLDNWLYILLLLSAYQLRYL 92
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
D +P +AVV+E V LAK A + G+ LVN +LR+ +L +D P ++ R R
Sbjct: 93 DKIPNHAVVNEAVDLAK-ARKKGSEKLVNAVLRR-ILRED-----WPDIDSIKRKNKRD- 144
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
+ YS PVW+V + + G+E+A + SL ++ + DL + + V
Sbjct: 145 SIAYSLPVWLVSKLKEEYGEEQAQAIFE--------SLLVRNKASIRVTDLSRKEEIKAV 196
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAG------LLKEGLCAVQDESAGLVVAVVDPQPGQSI 337
L + TGL V + G L EG +QDES+ LV +D Q + +
Sbjct: 197 -----LEATDSPLAATGL--VKEQGHFAGHDLFAEGAITIQDESSQLVAPTLDLQGDEQV 249
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT- 396
+D CAAPGGKT +MAS L+ G V A+D+ +L ++ E A+ V ++T D R
Sbjct: 250 LDACAAPGGKTAHMASYLTS-GKVTALDLYDHKLDLIQENAERLGVADRVQTQKLDARKV 308
Query: 397 ---FADNSTVKCDKVLLDAPCSGLGVLSK 422
F +S DK+L+DAPCSG+G+L +
Sbjct: 309 HEFFGRDS---FDKILVDAPCSGIGLLRR 334
>gi|390630530|ref|ZP_10258511.1| RNA methyltransferase [Weissella confusa LBAE C39-2]
gi|390484266|emb|CCF30859.1| RNA methyltransferase [Weissella confusa LBAE C39-2]
Length = 458
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 95/339 (28%), Positives = 166/339 (48%), Gaps = 47/339 (13%)
Query: 103 RTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIV 162
+ +LD+RD+ L+T +V G I+ R L++ + K ++P + ++L + +++
Sbjct: 43 KQAELDERDVHLMTTMVYGVIQRRMTLEYWLKPFV---KKPEKLDPWVRELLYVSLFQMK 99
Query: 163 KLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
LD +P +A+ DE + +AK G V G+L + DR R
Sbjct: 100 FLDKVPNHAIFDEAINIAKRRGHDGVRKFVTGVLHAI-----------------DREGVR 142
Query: 222 ALATIY----------SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN-SRKGVT 270
+ I S P W++ + T+ LG E+A ++ + N P+ S R N + V
Sbjct: 143 SFDEITDKVERLSVEASLPTWLINQLTEELGWEKASRIAMAINDAPAQSARVNLAVTTVA 202
Query: 271 RADLVMQLNLLKV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVV 329
A +++ V P +++ + + + G +V + K+GL +QDESA L+ +
Sbjct: 203 DATKILEEEGFTVTPSKVT---PDALLLAGG--HVASSQAFKDGLVTLQDESAMLMAPSL 257
Query: 330 DPQPGQSIVDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVI 387
D QP ++D AAPGGKT +A+ L+ G V A+DI+ ++ ++N+ A+ V I
Sbjct: 258 DIQPDDQVLDAAAAPGGKTTQIATYLNAAEGGHVEALDIHDHKVGLINQNAERLHVADRI 317
Query: 388 RTIHADLR----TFADNSTVKCDKVLLDAPCSGLGVLSK 422
D R FAD + D++L+DAPCSG G+L +
Sbjct: 318 NARTLDARKVDEAFADG---QFDRILVDAPCSGFGLLRR 353
>gi|108760453|ref|YP_629658.1| ribosomal RNA small subunit methyltransferase B [Myxococcus xanthus
DK 1622]
gi|108464333|gb|ABF89518.1| ribosomal RNA small subunit methyltransferase B [Myxococcus xanthus
DK 1622]
Length = 438
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 103/317 (32%), Positives = 153/317 (48%), Gaps = 19/317 (5%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMP 167
D RD LVT++ G R + LD+ I ++ ++E +L LRIG Y+I +P
Sbjct: 36 DPRDAALVTELTYGATRRQLALDYAITRFA--DRKLDALEDKVLAALRIGAYQIFHTRVP 93
Query: 168 PYAVVDENVR-LAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI 226
A V E V+ L +V L AG N ILRKL L P + A L+
Sbjct: 94 ARAAVAETVQALKEVGLTRAAG-FTNAILRKLAALPAPPLPPASDV-------ALHLSVR 145
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHE 286
SHP W+V RW + G+E A ++V +N P+ +RAN+ K VTR L+ QL + V +
Sbjct: 146 ESHPQWLVERWLRQFGRERAEAMLVADNQAPAVVVRANTAK-VTRDALLAQLQEMGVDAK 204
Query: 287 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLV-VAVVDPQPGQSIVDCCAAPG 345
+ I + + + V EGL VQDE+A LV V P+ + ++D CAAPG
Sbjct: 205 ATTVSPVGITLPS-VGRVEDVYGYAEGLWQVQDEAAQLVGVYGAIPETAR-VLDACAAPG 262
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405
GK+ + A V A+D++ +LR + A+ + ++ D +
Sbjct: 263 GKSCHQAQSHD----VVAVDLHAHKLRKIEAEARRLGLQPRLKAYAHDAAEPFPEEWGEF 318
Query: 406 DKVLLDAPCSGLGVLSK 422
L+DAPCSGLG L +
Sbjct: 319 HAFLVDAPCSGLGTLRR 335
>gi|90961592|ref|YP_535508.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus salivarius
UCC118]
gi|301299300|ref|ZP_07205586.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
salivarius ACS-116-V-Col5a]
gi|90820786|gb|ABD99425.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus salivarius
UCC118]
gi|300853144|gb|EFK80742.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
salivarius ACS-116-V-Col5a]
Length = 445
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 97/317 (30%), Positives = 161/317 (50%), Gaps = 18/317 (5%)
Query: 110 RDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPP 168
+D +L+T IV G I+ + L++ + K + ++ + ++L + Y++V LD +P
Sbjct: 40 KDTKLLTTIVYGVIQHKLTLEYWLEPFI---KKANKLQLWVKELLLVSLYQMVYLDKIPD 96
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
AV +E++ +AK+ G V G+L + N L ND + L+ S
Sbjct: 97 RAVFNESIEIAKIKGHTGIRKFVTGVLHSI----RRNGLREVNEIDNDITR---LSIGTS 149
Query: 229 HPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL-NLLKVPHEL 287
P W+V K LG + ++ N+ P S+R N+ K V + LV +L N E
Sbjct: 150 TPEWLVEELIKELGITKVESILDTINTSPKHSVRINTHK-VNKQILVNELKNDGYTIRES 208
Query: 288 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 347
+ D I V G + ++ + G +QDESA L V +D Q ++D CAAPGGK
Sbjct: 209 EVTPDALI-VDGGF--LPKSSEFRNGKMIIQDESAMLAVESMDIQKDDIVLDACAAPGGK 265
Query: 348 TLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR-TFADNSTVKC 405
T +A L G+G V+A+DI+K +++++ E A + S + D R + + K
Sbjct: 266 TTQIAEKLMKGEGKVWALDIHKHKVKLIEENANKLGLISKVSAKQLDARKAITEFDSEKF 325
Query: 406 DKVLLDAPCSGLGVLSK 422
DK+L+DAPCSGLG++ +
Sbjct: 326 DKILVDAPCSGLGLMRR 342
>gi|226226029|ref|YP_002760135.1| putative rRNA methyltransferase [Gemmatimonas aurantiaca T-27]
gi|226089220|dbj|BAH37665.1| putative rRNA methyltransferase [Gemmatimonas aurantiaca T-27]
Length = 428
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 99/338 (29%), Positives = 154/338 (45%), Gaps = 34/338 (10%)
Query: 96 VERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILR 155
++++ RT LD RD R V ++V G +R R LD ++ S ++ +L ILR
Sbjct: 7 LDQSFERRTPTLDARDRRWVQELVWGVLRHRERLDAILATRIR--GGLSVLDDGVLDILR 64
Query: 156 IGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEG 214
+G Y+++ +D +PPYA + ++V K GAG LVN +LR++ + LP
Sbjct: 65 LGTYQLLSMDSVPPYAAIGQSVEAVKRKHGIGAGKLVNAVLRRIDRERATIEPALPADPV 124
Query: 215 NDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL 274
+ ALA +SHP W+V RW G E +L+ NN+ +R + + A+
Sbjct: 125 D------ALALQHSHPSWVVGRWVSQFGIAETAQLLALNNTPAPVVVRPHGVQADALAES 178
Query: 275 VMQLNLLK-----VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVV 329
+ Q ++ VP L + TG + + + G VQD +A LV
Sbjct: 179 LTQSDVSTRRVPLVPESLEI---------TGPVALTEVDAFRRGQFYVQDPAATLVAQYA 229
Query: 330 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRL-RILNETAKL----HQVN 384
G + D CAAPG K L MA LV A D ++ R+ R+ + +L N
Sbjct: 230 HVPEGSVVADLCAAPGSKALEMARRAR---LVIAADRSESRVDRMRSGFDRLGIDTTSSN 286
Query: 385 SVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
+ T+ AD S D VL+D PC+G G +
Sbjct: 287 RAMVTLVADA---TQPSIDPVDAVLVDVPCTGTGTFRR 321
>gi|423070880|ref|ZP_17059656.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
intermedius F0413]
gi|355364974|gb|EHG12701.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
intermedius F0413]
Length = 437
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 102/324 (31%), Positives = 158/324 (48%), Gaps = 35/324 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D LVT+IV GT+ + L+ + + D + S +LL + Y+I LD
Sbjct: 39 LSSADQALVTEIVYGTVARKMTLEWYLSHVIKDREKLDSWVYILL---LLSLYQIHYLDK 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +AVV+E V LAK A + G+ VN +LR L L+D + N R +
Sbjct: 96 IPAHAVVNEAVELAK-ARKKGSEKFVNAVLRGL--LRDGVADIASIKRKNKRYSVQ---- 148
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
YS PVW+V+ + G+ A+ + S LR + V LK
Sbjct: 149 -YSLPVWLVKVLIEEYGETRALAIF------ESLFLRNKASIRVVD---------LKCKE 192
Query: 286 ELS--LHLDEFIRVKTGL----QNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 339
EL L ++ + T L + L ++G +QDES+ LV ++D Q + ++D
Sbjct: 193 ELKERLQAEDSLLAPTALVKSHGHFASHYLFEKGAITIQDESSQLVAPIMDVQGDEKVLD 252
Query: 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 399
C+APGGKT ++AS L+ G V A+D+ +LR++ E AK V + T D R +
Sbjct: 253 ACSAPGGKTTHIASYLT-TGQVIALDLYDHKLRLIEENAKRLDVADRVITKKLDARRVFE 311
Query: 400 NSTVKC-DKVLLDAPCSGLGVLSK 422
V DK+L+DAPCSG+G++ +
Sbjct: 312 TFGVDAFDKILVDAPCSGIGLIRR 335
>gi|313885233|ref|ZP_07818985.1| ribosomal RNA small subunit methyltransferase B [Eremococcus
coleocola ACS-139-V-Col8]
gi|312619924|gb|EFR31361.1| ribosomal RNA small subunit methyltransferase B [Eremococcus
coleocola ACS-139-V-Col8]
Length = 456
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 96/349 (27%), Positives = 165/349 (47%), Gaps = 27/349 (7%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D LV +V G I+ R LD+ + +K ++ + +LR+ Y+ + LD +P +
Sbjct: 50 DTNLVVKLVYGVIQRRYSLDYFLAPFIKGKK----VDDWVASLLRLSIYQFIYLDRIPDH 105
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
AV + V +AK+ G G VNG+LR D L L KLE +ALA YS
Sbjct: 106 AVFSQAVEMAKLIGHAGLGGFVNGVLRNFQRRAD---LDLNKLENP----LQALAVKYSI 158
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSL 289
W+++ + + + L+ +P S R + G+ QL+ + + S
Sbjct: 159 APWIIKELQHQISEADLEALLGSLLEEPYVSARI-VKSGLNSQAAREQLSEEGLTSQASP 217
Query: 290 HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 349
+R ++G N + + L ++G +QDES+ LV ++ Q G +++D CAAPGGK
Sbjct: 218 ISPVGLRFESG--NPVHSSLFQQGALTIQDESSQLVASLGKLQAGMTVLDACAAPGGKAT 275
Query: 350 YMASCLS--GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 407
++A L G G + A+DI+ +L +++ + ++ + D F D+
Sbjct: 276 HIAQILRDLGGGKLQALDISSAKLTKVDDHLQRLGLSQFVSLQVEDASKFIPTDGKLYDR 335
Query: 408 VLLDAPCSGLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
+ LDAPCSGLG++ + ++Y K + +Q L E + LL
Sbjct: 336 IYLDAPCSGLGLMRRK----------PEIKYSKQANHIQALAEIQAELL 374
>gi|336053902|ref|YP_004562189.1| rRNA methylase [Lactobacillus kefiranofaciens ZW3]
gi|333957279|gb|AEG40087.1| rRNA methylase [Lactobacillus kefiranofaciens ZW3]
Length = 441
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 103/367 (28%), Positives = 182/367 (49%), Gaps = 39/367 (10%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
RA+S L+R+ G+++++ S +N + + +L D L T IV
Sbjct: 8 RAISLETLIRVLADGSYSNI-------SLNNSLQHSSLSLT---------DQNLATRIVY 51
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI++R +L++ + L + T ++PLLL + Y+I+ LD +P AV+DE +LA
Sbjct: 52 GTIQYRLFLEYQLKGLVRTKITEKYLKPLLL----MSLYQIIFLDKVPNRAVLDEANKLA 107
Query: 180 KVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRW 237
K R + ++NGILR + + LP + + + R L+ S P W+V +
Sbjct: 108 KQFGRHHSSGYRIINGILRSFI----RRGVILP----DKKDRIRYLSIKESVPEWLVNYF 159
Query: 238 TKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRV 297
G ++ ++ N S+R +S + ++ + + P +L + +
Sbjct: 160 INNFGIKKTESVLTSINQPAKNSVRISSLVDSKQVFAKLKADGYE-PQWSNLSTHDVVLN 218
Query: 298 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVD-PQPGQSIVDCCAAPGGKTLYMASCLS 356
G+ Q+ L K+G +QDE+A LVV + Q ++D C+APGGKT+ +A +
Sbjct: 219 HGGIS---QSDLFKQGKLTIQDEAASLVVEAFNFDQEADHVLDACSAPGGKTVQIAENIK 275
Query: 357 GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCDKVLLDAPCS 415
G V A+DI++ +L ++ E A+ V ++T D R + + K+L+DAPCS
Sbjct: 276 GD--VIALDIHEKKLNLVRENARRMHVEDRVKTKACDARKAPEIFKPGEFSKILVDAPCS 333
Query: 416 GLGVLSK 422
GLG+L +
Sbjct: 334 GLGLLRR 340
>gi|421894377|ref|ZP_16324866.1| ribosomal RNA small subunit methyltransferase B [Pediococcus
pentosaceus IE-3]
gi|385272681|emb|CCG90238.1| ribosomal RNA small subunit methyltransferase B [Pediococcus
pentosaceus IE-3]
Length = 444
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 98/346 (28%), Positives = 172/346 (49%), Gaps = 21/346 (6%)
Query: 79 DLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH 138
D+L K +GS N ++ ++ L D D L+T+IV G ++ R LD +
Sbjct: 14 DILEKIDEGSFSN----IQLNQDIKSSSLIDIDKNLLTEIVYGVLQHRLTLDFYLA---- 65
Query: 139 DEKTFSSMEP-LLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILR 196
D M P ++ +LR +++ LD +P +A+ +E++ +AK+ G +V G+LR
Sbjct: 66 DYIRKPEMTPRWVINLLRTAVFQMEFLDRVPDFAIFNESIEIAKLRGNDGIRKMVTGVLR 125
Query: 197 KLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSD 256
+ N P + R L+T YS W+V + LG+E+ I ++ N
Sbjct: 126 SY---QRNGK---PSFDSIKNPVER-LSTQYSVAPWIVDQMLYELGEEKCISILKSINQP 178
Query: 257 PSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCA 316
++R N R T AD++ L ++ D +R+ G ++ +G
Sbjct: 179 SHLAVRIN-RWNKTHADIIKDLEYEYTVTTSAIAKDG-LRLSRG-ASISDTRSYIDGDLT 235
Query: 317 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNE 376
VQDESA LV + + GQ ++D CAAPGGKT +A+ + G V DI + R++++ +
Sbjct: 236 VQDESAMLVAETMHLEKGQKVLDACAAPGGKTTQIAAMIGETGEVTGWDIYQKRVQLIQD 295
Query: 377 TAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422
A+ +++V +T D F ++ D++L+DAPCSG+G++ +
Sbjct: 296 NAQRMHLDNV-KTEVQDAIAFREDLDESFDRILVDAPCSGIGLMRR 340
>gi|306821088|ref|ZP_07454704.1| sun family protein [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|402311004|ref|ZP_10829959.1| ribosomal RNA small subunit methyltransferase B [Eubacterium sp.
AS15]
gi|304550781|gb|EFM38756.1| sun family protein [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|400366126|gb|EJP19162.1| ribosomal RNA small subunit methyltransferase B [Eubacterium sp.
AS15]
Length = 436
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/325 (27%), Positives = 167/325 (51%), Gaps = 19/325 (5%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F L D + +T + G + +LD+ I + + +FS + IL + +E+
Sbjct: 29 FTKSKLKDEEKNFITYLSYGVLGNIYFLDYFI--RKYSDISFSKISNKAKVILEMALFEL 86
Query: 162 VKLDMPP-YAVVDENVRLAK-VALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGND-RA 218
+ ++ YA V+E+V L K V R A N VN +LRK+ +N L + +D +
Sbjct: 87 IFMNSSQNYATVNESVALCKKVDFR--AKNFVNAVLRKI---SSSNPSNLRNYKFDDIKD 141
Query: 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL 278
++ L+ +S ++ R + G + A +LM+ + P +R N + + D
Sbjct: 142 KSERLSVKFSISKYISDRLIENYGFDFAYELMLSMSKTPEIFIRGN----LIKTDFNTFK 197
Query: 279 NLL---KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
NLL K+ +E+ + +K L+N+ + ++GL ++QD S+ L V + Q
Sbjct: 198 NLLDENKLCYEIIDEKNMIFSLK-NLKNIANLNIYRDGLISIQDYSSMLCVIASGVKENQ 256
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
+++D CAAPGGK+++M+ + +G + ++DI++ +L++L+E K ++ +I T D
Sbjct: 257 TVLDICAAPGGKSIFMSQIMKNKGSILSMDISENKLKLLDEQCKRLGID-IITTKVNDAT 315
Query: 396 TFADNSTVKCDKVLLDAPCSGLGVL 420
+ ++ K D VL D PCSG+G+L
Sbjct: 316 IYDESYKEKFDVVLADVPCSGIGIL 340
>gi|422698512|ref|ZP_16756404.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX1346]
gi|315172961|gb|EFU16978.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX1346]
Length = 459
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 111/401 (27%), Positives = 195/401 (48%), Gaps = 45/401 (11%)
Query: 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 120
R V+ + R+ GGA+++LL NEM +L ++D RL T++V
Sbjct: 14 RYVALETIERVDKGGAYSNLLL--------NEM--------MTKSELSEKDGRLFTELVY 57
Query: 121 GTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLA 179
GTI + L++ + K ++ + +L + Y+++ LD +P +AV++E V +
Sbjct: 58 GTISRKLLLEYYLTPFV---KKPQRVDNWVKNLLILSLYQLLYLDKVPDHAVINEAVEIG 114
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGN-DRAQARALATIYSHPVWMVRRWT 238
K G G VNG+LR + N + L + DR LAT S P W+ +
Sbjct: 115 KRRGNTGIGKFVNGVLRAF---QRNGAPSLAAISDPVDR-----LATEISMPRWLTEKLL 166
Query: 239 KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVK 298
LG+EE +L + S R N+R ++R + + +L + + S + +
Sbjct: 167 AQLGEEETRQLGLSLFEKSHASGRVNTR-FISREEALEELQETGIAAKESQLSPYGVVAE 225
Query: 299 TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 358
G + + L G +QDES+ LV + +P ++D CAAPGGKT ++A+ L +
Sbjct: 226 KGY--LAGSELFINGCLTIQDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAE 283
Query: 359 --GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKVLLDAPCS 415
G V ++DI+ +++++NE A+ V V++ D R A+ + D++L+DAPCS
Sbjct: 284 AGGRVTSLDIHAHKIKLINENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAPCS 343
Query: 416 GLGVLSKTCVGIGDWRIWKSLRYCKTSFLMQHLCETKYLLL 456
GLG++ R ++Y KT+ Q+L + + +L
Sbjct: 344 GLGLM----------RRKPDIKYHKTANDFQNLPKIQLEIL 374
>gi|291522862|emb|CBK81155.1| ribosomal RNA small subunit methyltransferase RsmB [Coprococcus
catus GD/7]
Length = 455
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/322 (28%), Positives = 148/322 (45%), Gaps = 22/322 (6%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSS-----MEPLLLQILRIGFYEI 161
LD RD ++ + GT+ + +LD +I + FSS ++ + ILR+ Y+I
Sbjct: 39 LDKRDRAFISRLFRGTLEYEIFLDGVI-------RQFSSVRLNKIKTPIKAILRMSVYQI 91
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
+K+D +P A DE V+L + VNG+LR + K+ P P ++ A
Sbjct: 92 LKMDHIPDAAACDEAVKLTRKRGLKNLSGFVNGVLRNISRNKEVIHYPDP-----EKTPA 146
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
L+ YS P W+ W + G E ++ D ++R + + ++
Sbjct: 147 AYLSMRYSVPEWLAEMWLRDYGFEMTAEMGQAMLDDQKTTVRVRDSQNMAAVKEALRSEG 206
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
L + E L E + + +G + G +G QDESA L G+SI+D
Sbjct: 207 LHI--EEGCMLPEALHL-SGYDYLGNVGPFADGRITAQDESAMLAAVAAGIAGGESIIDV 263
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
CAAPGGK+++MA L G G V A D+ + ++ + E K + +V + D F
Sbjct: 264 CAAPGGKSMHMADILKGSGQVSARDLTEAKVLKIQENLKRTGLKNVSAEVK-DALVFYPE 322
Query: 401 STVKCDKVLLDAPCSGLGVLSK 422
K D V+ D PCSGLGV+ +
Sbjct: 323 DAQKADIVMADLPCSGLGVMGR 344
>gi|227890677|ref|ZP_04008482.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus salivarius ATCC
11741]
gi|227867615|gb|EEJ75036.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus salivarius ATCC
11741]
Length = 445
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 163/321 (50%), Gaps = 18/321 (5%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L +D +L+T IV G I+ + L++ + K + ++ + ++L + Y++V LD
Sbjct: 36 NLSVKDTKLLTTIVYGVIQHKLTLEYWLEPFI---KKANRLQLWVKELLLVSLYQMVYLD 92
Query: 166 -MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P AV +E++ +AK+ G V G+L + N L ND + L+
Sbjct: 93 KIPDRAVFNESIEIAKIKGHTGIRKFVTGVLHSI----RRNGLREVNEIDNDITR---LS 145
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQL-NLLKV 283
S P W+V K LG + ++ N+ P S+R N+ K V + LV +L N
Sbjct: 146 IGTSTPKWLVEELIKELGITKVESILDTINTSPKHSVRINTYK-VNKQILVNELKNDGYT 204
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
E + D I V G + ++ + G +QDESA L V +D Q ++D CAA
Sbjct: 205 IRESEVTPDALI-VDGGF--LPKSSEFRNGKMIIQDESAMLAVESMDIQKDDIVLDACAA 261
Query: 344 PGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR-TFADNS 401
PGGKT +A L G+G V+A+DI+K +++++ E A + S I D R +
Sbjct: 262 PGGKTTQIAEKLMKGEGKVWALDIHKHKVKLIEENANKLGLISKISAKQLDARKAITEFD 321
Query: 402 TVKCDKVLLDAPCSGLGVLSK 422
+ K DK+L+DAPCSGLG++ +
Sbjct: 322 SEKFDKILVDAPCSGLGLMRR 342
>gi|300361951|ref|ZP_07058128.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
gasseri JV-V03]
gi|300354570|gb|EFJ70441.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
gasseri JV-V03]
Length = 438
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 160/326 (49%), Gaps = 34/326 (10%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD 165
+L D L T IV GTI+++ +L++ + L + + PLLL + Y+ L+
Sbjct: 34 ELKPADKALATRIVYGTIQYKIFLEYQLKPLIKTKLRDKFLMPLLL----MSAYQYFFLE 89
Query: 166 -MPPYAVVDENVRLAKVALRPGAGN--LVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
+P A+ DE +LAK + +G+ LVNGILR L + LP +
Sbjct: 90 KVPANAIFDEANKLAKKFSKKNSGSYKLVNGILR--ALERQGKVLP------SSDNLVDY 141
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKG-------VTRADLV 275
L+ S P W+V + G+++ +++V +N + S+R + KG R D
Sbjct: 142 LSIKESFPKWLVEYLLDHFGEDQTKEILVRSNQPAANSIRMAAVKGKFEEIKTALRKDGF 201
Query: 276 MQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
H L+L K G V Q L K+G +QD +A L V + +
Sbjct: 202 DFKESCLTRHNLNLS-------KGG---VAQTSLFKDGKITIQDAAASLAVDAFNFTGNE 251
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
++D C+APGGKT+ +A L+ G V A+DI++ +LR++ AK V+ ++T D R
Sbjct: 252 QVLDACSAPGGKTVQIAEKLTN-GSVIALDIHENKLRLVKNAAKRLHVSDKVKTKALDAR 310
Query: 396 TFADNSTV-KCDKVLLDAPCSGLGVL 420
+ T + DK+L+DAPCSGLG++
Sbjct: 311 KAQEYFTAGQFDKILVDAPCSGLGLI 336
>gi|148240114|ref|YP_001225501.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
WH 7803]
gi|147848653|emb|CAK24204.1| Ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
WH 7803]
Length = 447
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 105/368 (28%), Positives = 169/368 (45%), Gaps = 41/368 (11%)
Query: 65 AVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIR 124
A+ ++ GA+AD+ +ER L R L D L T++ G IR
Sbjct: 19 ALEVLEAVAAGAYADV--------------ALERAL--RQHPLQAADRGLATELAYGAIR 62
Query: 125 WRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVAL 183
WR++LD + L + P L +L +G Y++++++ +P A V+ V LAK
Sbjct: 63 WRQWLDAWLDKL--GKVPARKQPPRLRWLLHLGLYQVLRMERIPAAAAVNTTVELAKRGK 120
Query: 184 RPGAGNLVNGILRKLVLLKD-NNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLG 242
+VNG+LR + ++ + L P A ALA S P+W + ++ G
Sbjct: 121 LARLAPVVNGLLRAALRAREAGDGLVQPT------DPALALAQNQSLPLWFTQDLLRWCG 174
Query: 243 QEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQ 302
+A ++ N P LR N R + A++ +L E S+ GLQ
Sbjct: 175 PAQAAQVAQACNQVPPLDLRIN-RLRSSPAEMAARLA------ECSMPTAAIPGCPDGLQ 227
Query: 303 NVIQAGLLK------EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLS 356
+ AG L+ EG VQD +A V ++ +PGQ ++D CAAPGGK ++A +
Sbjct: 228 VLHSAGDLRQWPGYEEGHWCVQDRAAQWVAPLLAVEPGQRVLDACAAPGGKATHLAELMG 287
Query: 357 GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC--DKVLLDAPC 414
QG V+A+D + GRL+ + A + + + + D++LLDAPC
Sbjct: 288 DQGEVWAVDRSGGRLQRVAANAARLGCGCINALAADAAQLLEERPQWRASFDRILLDAPC 347
Query: 415 SGLGVLSK 422
SGLG L++
Sbjct: 348 SGLGTLAR 355
>gi|365925225|ref|ZP_09447988.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus mali KCTC 3596
= DSM 20444]
gi|420266577|ref|ZP_14769035.1| 16S rRNA methyltransferase [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|394425157|gb|EJE98173.1| 16S rRNA methyltransferase [Lactobacillus mali KCTC 3596 = DSM
20444]
Length = 443
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/314 (28%), Positives = 164/314 (52%), Gaps = 17/314 (5%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D L+T IV G ++ L+ + +K M+ + Q+L + Y++ LD +P +
Sbjct: 43 DANLLTIIVYGVLQNLLLLEFWLEPFVKGKK----MDDWVKQLLLMSLYQLKFLDKVPNH 98
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
AV++E +++AK G V G+L ++ +++ + + N+R L+ +YS
Sbjct: 99 AVLNEAIKIAKSKGHDGTRKFVTGVLHAILRKGVHDAASIE--DENER-----LSIVYSV 151
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSL 289
PVW+V K +G ++ + ++ N P ++R N K + D+ +L E S
Sbjct: 152 PVWIVEELKKQVGYDKTVAILNSLNKAPKQAIRVNESKA-SIEDVKTELTREGFKVENSQ 210
Query: 290 HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 349
+ V+ G +V L +EG +QDESAGLVV ++ + ++D CAAPGGKT+
Sbjct: 211 VAAGSLIVEKG--HVSSTRLFEEGKIMLQDESAGLVVEAMNLNGDEQVLDACAAPGGKTM 268
Query: 350 YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC-DKV 408
+A L G V A+DI+K +++++ E A+ + +I D R ++ + +++
Sbjct: 269 QIADYLR-TGTVTALDIHKHKVKLIKENARKCGFEEKVNSIQLDARKLNEHFEPESFNQI 327
Query: 409 LLDAPCSGLGVLSK 422
L+DAPCSG+G++ +
Sbjct: 328 LVDAPCSGIGLMRR 341
>gi|331004329|ref|ZP_08327804.1| hypothetical protein HMPREF0491_02666 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330411395|gb|EGG90810.1| hypothetical protein HMPREF0491_02666 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 444
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/305 (29%), Positives = 156/305 (51%), Gaps = 23/305 (7%)
Query: 119 VGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVR 177
V G I +R LD++I + ++ ++P++ +ILR+ Y+++ +D +P AV++E V
Sbjct: 50 VHGVIEYRLQLDYIIKKYNNGKR----IKPVIREILRMSIYQMLYMDRVPDRAVINEAVN 105
Query: 178 LAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRW 237
L K+ PG VNGILRK+ KD K+ +D L+ YS P ++
Sbjct: 106 LVKLRRLPGLTGFVNGILRKISGEKD-------KIVFDD------LSIKYSMPEPVLNII 152
Query: 238 TKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRV 297
G L + P S+R N+ K + D++ +L + ++S +L+ I
Sbjct: 153 KDNTGDYFEETLDYFLKIKP-VSIRVNTSKSSVK-DIIKELEDENIRVDIS-NLNTDILY 209
Query: 298 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSG 357
+G V + ++K G + D S+ ++ +++ + + VD CAAPGGK+ +A L
Sbjct: 210 ISGFDKVDEISVIKSGKAYITDASSSMISKLIETKNIKKCVDVCAAPGGKSFLLADKLLK 269
Query: 358 QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGL 417
+Y+ DI+ ++ I+ E A + ++I I AD R+F D + D VL D PCSG+
Sbjct: 270 DTKIYSCDISDNKVNIIKENANIQGFENIIPMI-ADARSF-DEKFLDADIVLADLPCSGI 327
Query: 418 GVLSK 422
G++ K
Sbjct: 328 GIIGK 332
>gi|422853157|ref|ZP_16899821.1| RNA methyltransferase Sun [Streptococcus sanguinis SK160]
gi|325697709|gb|EGD39594.1| RNA methyltransferase Sun [Streptococcus sanguinis SK160]
Length = 438
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 100/326 (30%), Positives = 159/326 (48%), Gaps = 39/326 (11%)
Query: 107 LDDRDLRLVTDIVGGTI------RWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYE 160
L+ D LVT++V GT+ W YL HLI + ++ L +L + Y+
Sbjct: 39 LNQADKGLVTELVYGTVARKITLEW--YLSHLI-------EDRDKLDNWLYILLMLSLYQ 89
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
++ LD +P +AVV E V +AK+ R G+ N +LR++ + E R
Sbjct: 90 MLYLDKIPQHAVVHEAVEIAKIRKR-GSEKFANALLRRI------EREGVADFETIKRKN 142
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLM--VWNNSDPSFSLRANSRKGVTRADLVMQ 277
R + YS PVW+V+ + G+E A+ + ++ S S + SRK R L +
Sbjct: 143 KR-YSIQYSLPVWLVKDLIEEYGEERALAIFASLFVRSKASIRVTDMSRKAELRQRLGAE 201
Query: 278 LNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 337
+LL P L F G Q L + G +QDES+ LV +D + + I
Sbjct: 202 DSLLS-PSALFKKQGHF----AGHQ------LFESGAITIQDESSQLVAPTLDIEGEEQI 250
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD-LRT 396
+D C+APGGKT++MAS L+ G + A+D+ +L ++ E A+ + I T D +
Sbjct: 251 LDACSAPGGKTVHMASYLTN-GHITALDLYDHKLELVEENAERLGLADKITTKKLDATKV 309
Query: 397 FADNSTVKCDKVLLDAPCSGLGVLSK 422
F DK+L+DAPCSG+G++ +
Sbjct: 310 FETFGPDAFDKILVDAPCSGIGLIRR 335
>gi|89092289|ref|ZP_01165243.1| Fmu, rRNA SAM-dependent methyltransferase [Neptuniibacter
caesariensis]
gi|89083377|gb|EAR62595.1| Fmu, rRNA SAM-dependent methyltransferase [Oceanospirillum sp.
MED92]
Length = 432
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 167/344 (48%), Gaps = 33/344 (9%)
Query: 84 KGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTF 143
+ KGS + + +ER D+D L+ ++ GT+R+ L+ ++ LL + +
Sbjct: 18 QNKGSLNTKYPAIERRCA-------DKDRGLLRELCYGTLRYYPQLNRVLQLLQNRPFKY 70
Query: 144 SSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKD 203
++ L + +G Y+I +P +A + E V K +PGA L+N ILR+ +D
Sbjct: 71 KDIDVRALAL--VGLYQIQHTRIPAHAAIHETVEACKELNKPGAAKLLNAILRRFQREQD 128
Query: 204 NNSLPLPKLEGNDRAQARALATIYSHPVWMVRR----WTKYLGQEEAIKLMVWNNSDPSF 259
+ + +L+G D + +Y+H WM+ + W + ++ NN
Sbjct: 129 DIT---SELKGED-------SYLYNHSEWMIAKLKNNWPDHWQ-----AILEANNEQAPL 173
Query: 260 SLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQD 319
+LR N R+ ++R + QLN + + + ++ D+ +R+ + NV + G +VQD
Sbjct: 174 TLRVN-RRSISREEFQQQLNPV-IDSDPTVFSDQGLRLAESV-NVESLPGYQVGAFSVQD 230
Query: 320 ESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK 379
E+A L ++D +P Q ++D CAAPGGK ++ V A+++ R + E K
Sbjct: 231 EAAQLSADLLDLKPQQRVLDACAAPGGKLCHILESEPKLASVEAVELEAKRAERIEENLK 290
Query: 380 LHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKT 423
++ + + A +++ D D++LLDAPCS GV+ +
Sbjct: 291 RLRLKATLHIGDASEQSWWDGDLY--DRILLDAPCSATGVIRRN 332
>gi|424787226|ref|ZP_18213994.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
intermedius BA1]
gi|422113989|gb|EKU17707.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
intermedius BA1]
Length = 437
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 102/324 (31%), Positives = 160/324 (49%), Gaps = 35/324 (10%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D LVT+IV GT+ + L+ + + D + S +LL + Y+I LD
Sbjct: 39 LSSADQALVTEIVYGTVARKMTLEWYLSHVIKDREKLDSWVYILL---LLSLYQIQYLDK 95
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALAT 225
+P +AVV+E V LAK A + G+ VN +LR L L+D + N R +
Sbjct: 96 IPAHAVVNEAVELAK-ARKKGSEKFVNAVLRGL--LRDGVADIASIKRKNKRYSVQ---- 148
Query: 226 IYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPH 285
YS PVW+V+ + G+ A+ + S LR ++ + DL K
Sbjct: 149 -YSLPVWLVKVLIEEYGETRALAIF------ESLFLR--NKASIRVVDL-------KCKE 192
Query: 286 ELS--LHLDEFIRVKTGL----QNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 339
EL L ++ + T L + L ++G +QDES+ LV ++D Q + ++D
Sbjct: 193 ELKERLQAEDSLLAPTALVKSHGHFASHYLFEKGAITIQDESSQLVAPIMDVQGDEKVLD 252
Query: 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 399
C+APGGKT ++AS L+ G V A+D+ +LR++ E AK V + T D R +
Sbjct: 253 ACSAPGGKTTHIASYLT-TGQVIALDLYDHKLRLIEENAKRLGVADRVITKKLDARRVFE 311
Query: 400 NSTVKC-DKVLLDAPCSGLGVLSK 422
V DK+L+DAPCSG+G++ +
Sbjct: 312 TFGVDAFDKILVDAPCSGIGLIRR 335
>gi|291536615|emb|CBL09727.1| ribosomal RNA small subunit methyltransferase RsmB [Roseburia
intestinalis M50/1]
gi|291541043|emb|CBL14154.1| ribosomal RNA small subunit methyltransferase RsmB [Roseburia
intestinalis XB6B4]
Length = 446
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/323 (26%), Positives = 155/323 (47%), Gaps = 26/323 (8%)
Query: 114 LVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVV 172
+T +V GTI+ LD++I + ++ ILR+G Y+I +D +P A
Sbjct: 46 FLTRLVEGTIQHMIELDYVIDQFSKVKVKKMKP--VIRNILRMGVYQIQYMDSVPDSAAC 103
Query: 173 DENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVW 232
+E V+LA+ + VNG+LR + +++ S+ P E + AL+ YS P W
Sbjct: 104 NEAVKLARKSGFSTLSGFVNGVLRNIA--RNSGSIRYPDEE---KEPVLALSVRYSMPEW 158
Query: 233 MVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK-------------GVTRADLVMQLN 279
+V W G E+ ++ + + ++R N K GVT L +L+
Sbjct: 159 IVEEWLNAYGMEQTKAILDAFSKEAPITIRTNVTKITPDALKEQLKAEGVTVQTL-EELS 217
Query: 280 LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 339
+P+ + H + +G +++ ++GL VQD S+ +V P+ G ++D
Sbjct: 218 YAGLPYTDAYH---YAFAISGFDHLMALPSFQDGLFYVQDISSMMVAEAAAPEKGAHVID 274
Query: 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 399
CAAPGGK++++A L G G V + D+ + ++ E +Q+ ++ + D +
Sbjct: 275 VCAAPGGKSIHLAEMLDGTGSVESRDLTGYKTGLIEENISRYQIKNMTTKVW-DATVPDE 333
Query: 400 NSTVKCDKVLLDAPCSGLGVLSK 422
++ D ++ D PCSGLGVL K
Sbjct: 334 SAEDTADVLVADLPCSGLGVLRK 356
>gi|389856110|ref|YP_006358353.1| sun protein [Streptococcus suis ST1]
gi|353739828|gb|AER20835.1| sun protein [Streptococcus suis ST1]
Length = 437
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 99/319 (31%), Positives = 154/319 (48%), Gaps = 26/319 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDM 166
L +D LVT+++ GT+ + L+ + D + + LL + + KL
Sbjct: 40 LSAQDKGLVTELIYGTVSRKITLEWYLAHFIEDREKLDTWVYYLLMLSLYQLLYLDKL-- 97
Query: 167 PPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI 226
P +AVV+E V +AK +PG VN ILRK+ ++LP P + + + + L+
Sbjct: 98 PTHAVVNEAVNIAK--RKPGTDKFVNAILRKI----SQSTLPNP---ADIKRKNKRLSVQ 148
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHE 286
YS PVW+V+ G E A K+ + S+R + V R + E
Sbjct: 149 YSVPVWLVQTLIAEYGDERAEKVFQSLHDRNKASVRVTDGQQVER-----------LADE 197
Query: 287 LSLHLDEFIRVKTGLQNVIQAG--LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
L + V + AG KEGL +QDE++ LV +D Q + I+D CAAP
Sbjct: 198 LGAQHSQLSPVGLVKSHGHFAGTDYFKEGLITIQDETSQLVAPTLDIQGDEIILDACAAP 257
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL-RTFADNSTV 403
GGKT +MAS L+ G VYA+D+ +L ++ E A+ + I T D R +
Sbjct: 258 GGKTCHMASYLT-DGKVYALDLYDHKLNLIEENARRLGLEDKIETKGLDASRVHEEFGPD 316
Query: 404 KCDKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG+G++ +
Sbjct: 317 TFDKILVDAPCSGIGLIRR 335
>gi|445380240|ref|ZP_21427012.1| 16S rRNA methyltransferase B [Streptococcus thermophilus MTCC 5460]
gi|445393658|ref|ZP_21428748.1| 16S rRNA methyltransferase B [Streptococcus thermophilus MTCC 5461]
gi|444749125|gb|ELW74051.1| 16S rRNA methyltransferase B [Streptococcus thermophilus MTCC 5461]
gi|444749203|gb|ELW74121.1| 16S rRNA methyltransferase B [Streptococcus thermophilus MTCC 5460]
Length = 440
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 113/359 (31%), Positives = 177/359 (49%), Gaps = 44/359 (12%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D+D LVT+IV GT+ + L+ ++ + D +E + +L + Y++ LD
Sbjct: 40 LTDKDKALVTEIVYGTVSRKITLEWILAHVIEDR---DKLEAWVYDLLLLSLYQLAYLDK 96
Query: 166 MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +AVV++ V +AK + GA LVN +LRKL +S PLP R R +
Sbjct: 97 IPSHAVVNDAVSIAKNRGNKKGAEKLVNAVLRKL------SSQPLPDPSKIKRVNKR-YS 149
Query: 225 TIYSHPVWMVRRWTKYLGQEEAI----KLMVWNN-----SDPSFSLRANSRKGVTRADLV 275
YS PVW+V++ + G+E A+ L V N +D S G R+DL
Sbjct: 150 VQYSLPVWLVKKLIEQYGEERALAIFQSLFVRNKASVRVTDVSRMEEIAEATGAERSDL- 208
Query: 276 MQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
+ L+K + D F KEGL +QDE++ LV + Q +
Sbjct: 209 SPVGLVKSSGYFA-GTDYF----------------KEGLLTIQDETSQLVAPTLAIQGME 251
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
I+D CAAPGGKT++MAS L+ G V A+D+ +L ++ E A+ + ++T D R
Sbjct: 252 EILDACAAPGGKTVHMASYLTS-GHVTALDLYDHKLALIKENAQRLGLADKVKTQKLDAR 310
Query: 396 TFAD-NSTVKCDKVLLDAPCSGLGVLSKT--CVGIGDWRIWKSLRYCKTSFLMQHLCET 451
T DK+L+DAPCSG+G++ + D + +KSL+ + L +C+T
Sbjct: 311 QVHQVFPTASFDKILVDAPCSGIGLIRRKPDIKYNKDLQDFKSLKSVQLDIL-SSVCQT 368
>gi|194476557|ref|YP_002048736.1| Sun protein (Fmu protein) [Paulinella chromatophora]
gi|171191564|gb|ACB42526.1| Sun protein (Fmu protein) [Paulinella chromatophora]
Length = 451
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 159/327 (48%), Gaps = 17/327 (5%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQ-ILRIGFYEIVKLD-MPP 168
D L T+I G+IR R LD L H K ++ +P LL+ +L +G Y+++ ++ +P
Sbjct: 57 DRGLATEIAYGSIRRRLTLD---TYLSHLGKVLANKQPPLLRWLLHVGLYQLLFVERVPS 113
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
A ++ V LAK + +VNGILR + + + ++ +A I+S
Sbjct: 114 AAAINTTVELAKKSSLATLAPVVNGILRTAHRFQQSGKAFVTLSNSSNNLEA-----IHS 168
Query: 229 HPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELS 288
P W+ + GQ V +N P LR N +RA ++ L L + +
Sbjct: 169 LPNWLTNNLLSWRGQMGLEAFAVTSNDSPPIDLRINPLN-TSRAQVLHALIKLGIKAQPL 227
Query: 289 LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKT 348
L + I + L N+ K G +QD +A + ++DP PG ++D C+APGGK+
Sbjct: 228 PGLSQGIAILGRLGNLQILPGFKLGHWCIQDRAAQWISPLLDPHPGHRVLDVCSAPGGKS 287
Query: 349 LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---NSTVKC 405
++A + G ++A+D +K RL+ + AK + + I T+ AD T +D
Sbjct: 288 THIAELMGDVGEIWALDSSKVRLQKVVLNAKRLGLQT-IHTLVADGITISDLKPEWKGTF 346
Query: 406 DKVLLDAPCSGLGVLSKTCVGIGDWRI 432
D++L+DAPCSGLG L + WRI
Sbjct: 347 DRILIDAPCSGLGTLVRHSD--ARWRI 371
>gi|392329767|ref|ZP_10274383.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus canis FSL
Z3-227]
gi|391419639|gb|EIQ82450.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus canis FSL
Z3-227]
Length = 440
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 162/330 (49%), Gaps = 41/330 (12%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K + +D L+T+IV GTI + L+ + D ++ + +L I Y++V L
Sbjct: 38 KAVSAKDKALLTEIVYGTIARKMSLEWYLAHYIQDR---DKLDKWVYYLLMISLYQLVYL 94
Query: 165 D-MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARA 222
D +P +AVV++ V +AK + GA VN ILR++ S PLP + R Q +
Sbjct: 95 DRLPAHAVVNDAVTIAKNRGNKKGAEKFVNAILRQVT------SQPLPDMATIKR-QNKY 147
Query: 223 LATIYSHPVWMVRRWTKYLGQEEAIKLM--VWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
+ YS PVW+V++ G A+ +M ++ + S + ++++ + L + +L
Sbjct: 148 YSIKYSLPVWLVKKLRDQFGTARAVAIMESLFVRNKASIRVVDSTKREMIGHALGAEFSL 207
Query: 281 LKVPHELSLHLDEFIRVKTGLQ----NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQS 336
L TGL + + G +QDES+ LV + + ++
Sbjct: 208 LS---------------STGLTKPSGHFAASDYFTNGDITIQDESSQLVAPTLSIEGEET 252
Query: 337 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL-- 394
I+D C+APGGKT +MAS L+ G + A+D+ +L ++ E A+ V I T D
Sbjct: 253 ILDACSAPGGKTAHMASYLT-TGKIIALDLYDHKLDLVKENARRLGVADKIETKKLDARG 311
Query: 395 --RTFADNSTVKCDKVLLDAPCSGLGVLSK 422
R F +S DK+L+DAPCSG+G++ +
Sbjct: 312 VHRYFEKDS---FDKILVDAPCSGIGLIRR 338
>gi|422007064|ref|ZP_16354051.1| 16S rRNA methyltransferase B [Providencia rettgeri Dmel1]
gi|414097910|gb|EKT59562.1| 16S rRNA methyltransferase B [Providencia rettgeri Dmel1]
Length = 427
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 159/323 (49%), Gaps = 28/323 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
++++D+D L+ +I G +R+ L+ I L EK + + L ++ +G Y+++
Sbjct: 34 RNINDKDKALLQEICFGVLRYLPKLEWFISQLM--EKPLTGKQRTLHYLIMVGIYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A +P L+NG+LR + L + N+ +Q
Sbjct: 92 RIPPHAALAETVNGAVALKKPQLKGLINGVLRSF----QRQQVQLEERITNNTSQ----- 142
Query: 225 TIYSHPVWMVRR-WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
Y HP W+++R T Y ++I + NN P LR NS+ LNLL+
Sbjct: 143 --YLHPSWLLKRLQTAYPDDWQSI--IEANNQRPPMWLRVNSQHHTA----TQYLNLLEQ 194
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLL---KEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
E++ HL L L ++G VQD SA +++PQ G++I+D
Sbjct: 195 -SEITAHLHSSHPNAIRLDEPTAVSRLPGFEDGWSTVQDISAQGCAELLEPQNGENILDL 253
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET-AKLHQVNSVIRTIHADLRTFAD 399
CAAPGGKT ++ L+ + V A+DI++ RL+ + E +L Q VI+ T+A
Sbjct: 254 CAAPGGKTTHILE-LAPKANVIAVDIDESRLKRVKENLIRLKQHAVVIQGDGTQPETWAQ 312
Query: 400 NSTVKCDKVLLDAPCSGLGVLSK 422
+ D++LLDAPCS GV+ +
Sbjct: 313 GQ--QFDRILLDAPCSATGVIRR 333
>gi|307708280|ref|ZP_07644747.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
mitis NCTC 12261]
gi|307615726|gb|EFN94932.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
mitis NCTC 12261]
Length = 437
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 160/326 (49%), Gaps = 29/326 (8%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
F+ L D LVT++V GT+ + L+ + D S L +L + Y++
Sbjct: 33 FKGSQLSAADKGLVTELVYGTVARKLTLEWYLSHFIEDRDQLDSW---LYVLLLMSAYQL 89
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
LD +P +AVV+E V LAKV + G+ LVN +LR++ L++ P + R
Sbjct: 90 RYLDKIPDHAVVNEAVELAKVR-KKGSEKLVNAVLRRI--LREG----WPDIASIKRKNK 142
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R + YS PVW+V + + G+E A + S +R + VT ++ +
Sbjct: 143 RD-SIAYSLPVWLVAKLKEEYGEERAQAIF------ESLLVRNKASIRVTDLGRKEEIQV 195
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
L + L + ++ + L EG +QDES+ LV +D Q G+ ++D
Sbjct: 196 LLEASDSPLSVFGLVKEQGHFAG---HDLFSEGAITIQDESSQLVAPTLDLQGGEQVLDA 252
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT---- 396
CAAPGGKT ++AS L+ G V A+D+ +L ++ E A+ V ++ D R
Sbjct: 253 CAAPGGKTAHIASYLT-TGQVTALDLYDHKLDLIQENAQRLGVADRVQMQKLDARKVHEF 311
Query: 397 FADNSTVKCDKVLLDAPCSGLGVLSK 422
F +S DK+L+DAPCSG+G+L +
Sbjct: 312 FGQDS---FDKILVDAPCSGIGLLRR 334
>gi|240147074|ref|ZP_04745675.1| ribosomal RNA small subunit methyltransferase B [Roseburia
intestinalis L1-82]
gi|257200759|gb|EEU99043.1| ribosomal RNA small subunit methyltransferase B [Roseburia
intestinalis L1-82]
Length = 446
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/323 (26%), Positives = 155/323 (47%), Gaps = 26/323 (8%)
Query: 114 LVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVV 172
+T +V GTI+ LD++I + ++ ILR+G Y+I +D +P A
Sbjct: 46 FLTRLVEGTIQHMIELDYVIDQFSKVKVKKMKP--VIRNILRMGVYQIQYMDSVPDSAAC 103
Query: 173 DENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVW 232
+E V+LA+ + VNG+LR + +++ S+ P E + AL+ YS P W
Sbjct: 104 NEAVKLARKSGFSTLSGFVNGVLRNIA--RNSGSIRYPDEE---KEPVLALSVRYSMPEW 158
Query: 233 MVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRK-------------GVTRADLVMQLN 279
+V W G E+ ++ + + ++R N K GVT L +L+
Sbjct: 159 IVEEWLNAYGMEQTKAILDAFSKETPITIRTNVTKITPDALKEQLKAEGVTVQTL-EELS 217
Query: 280 LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 339
+P+ + H + +G +++ ++GL VQD S+ +V P+ G ++D
Sbjct: 218 YAGLPYTDAYH---YAFAISGFDHLMALPSFQDGLFYVQDISSMMVAEAAAPEKGAHVID 274
Query: 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 399
CAAPGGK++++A L G G V + D+ + ++ E +Q+ ++ + D +
Sbjct: 275 VCAAPGGKSIHLAEMLDGTGSVESRDLTGYKTGLIEENISRYQIKNMTTKVW-DATVPDE 333
Query: 400 NSTVKCDKVLLDAPCSGLGVLSK 422
++ D ++ D PCSGLGVL K
Sbjct: 334 SAEDTADVLVADLPCSGLGVLRK 356
>gi|418005334|ref|ZP_12645329.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
casei UW1]
gi|410547263|gb|EKQ21500.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
casei UW1]
Length = 446
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 112/382 (29%), Positives = 174/382 (45%), Gaps = 56/382 (14%)
Query: 94 GYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLL 151
GY TL + L RD L+T+IV G I+ + LD + K ++ +
Sbjct: 22 GYSNLTLDHVINSHKLTPRDAGLLTNIVYGVIQHQLTLDFYLAPFIKGRK----LDNWIR 77
Query: 152 QILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLP 210
+L Y++ LD +P AV ++ +AK G V G+LR P P
Sbjct: 78 CLLYTAVYQLQYLDKVPARAVFFDSTEIAKKLGHQGIAKFVTGVLRN----AQRTGFPDP 133
Query: 211 KLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVT 270
+ + L+ S PVW+V + T +LG+ + ++ N SLR N+ K +T
Sbjct: 134 AAIAD---PVKRLSIESSTPVWLVEKLTAHLGEPKTRAILNVINVPAHASLRVNTTK-IT 189
Query: 271 RADLVMQLNLLKVPHELSLHLDEFIRVK----TGLQNVIQAGLLK------EGLCAVQDE 320
A L+ L EF +K T + + +G L +G +QDE
Sbjct: 190 PAALLASLK------------PEFPDLKESPLTPIGLIAPSGHLAGTSAFVKGEYTMQDE 237
Query: 321 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETA 378
S+ LV +D QPG ++D CAAPGGKT ++A L + G V A+D++ ++R++N+ A
Sbjct: 238 SSMLVAPSLDIQPGDVVLDACAAPGGKTTHIAQYLDPKQGGQVTALDLHANKVRLINKNA 297
Query: 379 KLHQVNSVIRTIHADLR----TFADNSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWK 434
K + I D R TF+ NS DK+L+DAPCSGLG++ R
Sbjct: 298 KRLGLTDRIHAQVLDARKVATTFSANS---FDKILVDAPCSGLGLI----------RRKP 344
Query: 435 SLRYCKTSFLMQHLCETKYLLL 456
++Y KT HL + + +L
Sbjct: 345 EIKYTKTPEDPAHLQQIQLAIL 366
>gi|386087028|ref|YP_006002902.1| Ribosomal RNA small subunit methyltransferase B [Streptococcus
thermophilus ND03]
gi|386345111|ref|YP_006041275.1| RNA-binding protein [Streptococcus thermophilus JIM 8232]
gi|387910138|ref|YP_006340444.1| RNA-binding protein [Streptococcus thermophilus MN-ZLW-002]
gi|312278741|gb|ADQ63398.1| Ribosomal RNA small subunit methyltransferase B [Streptococcus
thermophilus ND03]
gi|339278572|emb|CCC20320.1| RNA-binding protein [Streptococcus thermophilus JIM 8232]
gi|387575073|gb|AFJ83779.1| RNA-binding protein [Streptococcus thermophilus MN-ZLW-002]
Length = 440
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 113/359 (31%), Positives = 177/359 (49%), Gaps = 44/359 (12%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D+D LVT+IV GT+ + L+ ++ + D +E + +L + Y++ LD
Sbjct: 40 LTDKDKALVTEIVYGTVARKITLEWILAHVIEDR---DKLEAWVYDLLLLSLYQLAYLDK 96
Query: 166 MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +AVV++ V +AK + GA LVN +LRKL +S PLP R R +
Sbjct: 97 IPSHAVVNDAVSIAKNRGNKKGAEKLVNAVLRKL------SSQPLPDPSKIKRVNKR-YS 149
Query: 225 TIYSHPVWMVRRWTKYLGQEEAI----KLMVWNN-----SDPSFSLRANSRKGVTRADLV 275
YS PVW+V++ + G+E A+ L V N +D S G R+DL
Sbjct: 150 VQYSLPVWLVKKLIEQYGEERALAIFQSLFVRNKASVRVTDVSRMEEIAEATGAERSDL- 208
Query: 276 MQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
+ L+K + D F KEGL +QDE++ LV + Q +
Sbjct: 209 SPVGLVKSSGYFA-GTDYF----------------KEGLLTIQDETSQLVAPTLAIQGME 251
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
I+D CAAPGGKT++MAS L+ G V A+D+ +L ++ E A+ + ++T D R
Sbjct: 252 EILDACAAPGGKTVHMASYLTS-GHVTALDLYDHKLALIKENAQRLGLADKVKTQKLDAR 310
Query: 396 TFAD-NSTVKCDKVLLDAPCSGLGVLSKT--CVGIGDWRIWKSLRYCKTSFLMQHLCET 451
T DK+L+DAPCSG+G++ + D + +KSL+ + L +C+T
Sbjct: 311 QVHQVFPTASFDKILVDAPCSGIGLIRRKPDIKYNKDLQDFKSLKSVQLDIL-SSVCQT 368
>gi|116628135|ref|YP_820754.1| RNA-binding protein [Streptococcus thermophilus LMD-9]
gi|116101412|gb|ABJ66558.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus thermophilus
LMD-9]
Length = 442
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 113/359 (31%), Positives = 177/359 (49%), Gaps = 44/359 (12%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D+D LVT+IV GT+ + L+ ++ + D +E + +L + Y++ LD
Sbjct: 42 LTDKDKALVTEIVYGTVARKITLEWILAHVIEDR---DKLEAWVYDLLLLSLYQLAYLDK 98
Query: 166 MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +AVV++ V +AK + GA LVN +LRKL +S PLP R R +
Sbjct: 99 IPSHAVVNDAVSIAKNRGNKKGAEKLVNAVLRKL------SSQPLPDPSKIKRVNKR-YS 151
Query: 225 TIYSHPVWMVRRWTKYLGQEEAI----KLMVWNN-----SDPSFSLRANSRKGVTRADLV 275
YS PVW+V++ + G+E A+ L V N +D S G R+DL
Sbjct: 152 VQYSLPVWLVKKLIEQYGEERALAIFQSLFVRNKASVRVTDVSRMEEIAEATGAERSDL- 210
Query: 276 MQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
+ L+K + D F KEGL +QDE++ LV + Q +
Sbjct: 211 SPVGLVKSSGYFA-GTDYF----------------KEGLLTIQDETSQLVAPTLAIQGME 253
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
I+D CAAPGGKT++MAS L+ G V A+D+ +L ++ E A+ + ++T D R
Sbjct: 254 EILDACAAPGGKTVHMASYLTS-GHVTALDLYDHKLALIKENAQRLGLADKVKTQKLDAR 312
Query: 396 TFAD-NSTVKCDKVLLDAPCSGLGVLSKT--CVGIGDWRIWKSLRYCKTSFLMQHLCET 451
T DK+L+DAPCSG+G++ + D + +KSL+ + L +C+T
Sbjct: 313 QVHQVFPTASFDKILVDAPCSGIGLIRRKPDIKYNKDLQDFKSLKSVQLDIL-SSVCQT 370
>gi|383817278|ref|ZP_09972655.1| 16S rRNA methyltransferase B [Serratia sp. M24T3]
gi|383293898|gb|EIC82255.1| 16S rRNA methyltransferase B [Serratia sp. M24T3]
Length = 429
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 162/321 (50%), Gaps = 24/321 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K + D+D L+ ++ GT+R L+ CL K + + L +L +G Y+++
Sbjct: 34 KSIADKDKALLQELCFGTLRVLPELE--WCLQQLMAKPLTGKQRTLHYLLMVGLYQMLHT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A++ E V A RP L+NG+LR+ + L +++ ND
Sbjct: 92 RIPPHAILAETVEGAVALKRPQLKGLINGVLRQF---QRQQVDLLQRMQNND-------- 140
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
+ Y HP W+++R K E+ +++ NN P LR N + A L + L++
Sbjct: 141 SRYLHPSWLLKR-IKNAYPEQWQQILDANNQRPPMWLRVNRQHHTRDAYLAL---LIEAG 196
Query: 285 HELSLHLD--EFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
E H D + +R++T V +G VQD SA V ++DPQ G++I+D C
Sbjct: 197 IEAHPHPDYADALRLETPC-GVTSLPGFDQGWVTVQDASAQGSVDLLDPQDGEAILDLCC 255
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402
APGGKT ++ + + V A+D++K RL+ ++E + +++ ++ D R +T
Sbjct: 256 APGGKTTHILEA-APKAHVLAVDVDKQRLQRVHENLQRLGLHAEVK--QGDGREPHVWAT 312
Query: 403 VKC-DKVLLDAPCSGLGVLSK 422
K DK+LLDAPCS GV+ +
Sbjct: 313 GKVFDKILLDAPCSATGVIRR 333
>gi|309798767|ref|ZP_07693031.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
infantis SK1302]
gi|308117584|gb|EFO54996.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
infantis SK1302]
Length = 437
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 101/322 (31%), Positives = 159/322 (49%), Gaps = 39/322 (12%)
Query: 111 DLRLVTDIVGGTI------RWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
D LVT++V GT+ W YL H I + ++ L +L + Y++ L
Sbjct: 42 DKGLVTELVYGTVARKLTLEW--YLSHFI-------EDRDKLDNWLYVLLLMSVYQLQYL 92
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
D +P +AVV+E V +AK + + G+ LVN +LR++ L++ LP + R R
Sbjct: 93 DKLPDHAVVNEAVEIAK-SRKKGSEKLVNAVLRRI--LREG----LPDIAVIKRKNKRD- 144
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
+ YS PVW+V + + G+E A + SL ++ + DL + + +
Sbjct: 145 SIAYSLPVWLVSKLKEEYGEERAQAIFE--------SLLKRNKASIRVTDLSRKEEIKAL 196
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
HL VK + L EGL +QDES+ LV ++ Q + ++D CAA
Sbjct: 197 LGASDSHLSPAGLVKEQ-GHFASHDLFSEGLITIQDESSQLVAPTLELQGDEQVLDACAA 255
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TFADN 400
PGGKT +MAS L+ G V A+D +L ++ E A+ V ++T D R F N
Sbjct: 256 PGGKTAHMASYLT-TGQVTALDFYDHKLTLIQENAQRLGVADRVQTQKLDARKVHEFFGN 314
Query: 401 STVKCDKVLLDAPCSGLGVLSK 422
+ DK+L+DAPCSG+G+L +
Sbjct: 315 D--QFDKILVDAPCSGIGLLRR 334
>gi|414597017|ref|ZP_11446588.1| Putative rRNA methylase [Leuconostoc citreum LBAE E16]
gi|390482131|emb|CCF28649.1| Putative rRNA methylase [Leuconostoc citreum LBAE E16]
Length = 437
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/324 (28%), Positives = 160/324 (49%), Gaps = 28/324 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L+D D RL+T +V G I+ R D+ + +K +EP + ++L +++ LD
Sbjct: 28 LNDSDKRLLTTLVYGVIQHRLTFDYWLTPFIKQKK----IEPWVRELLYTALFQLQYLDK 83
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQARAL 223
+P +A+ +E++ +AK G V IL + L D N++ P + L
Sbjct: 84 IPQHAIFNESIEVAKTLGHIGTAKFVTAILHNISRQGLPDINAIQNP---------IQRL 134
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR----KGVTRADLVMQLN 279
+ S PVW++ K G+ + +++ N P+ ++R N+ + V +A L
Sbjct: 135 SVEASLPVWLIETLVKQNGEAKTRQIIGSINDAPAQAIRVNTALSTDEAVEQALLDEHFT 194
Query: 280 LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGL-VVAVVDPQPGQSIV 338
+K S D V G +V + ++GL +QDESA L V A+ ++++
Sbjct: 195 FVK-----SKVADHAYVVTGG--HVAGSKAYQDGLLTLQDESAMLPVEALQITTQVKTVL 247
Query: 339 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398
D AAPGGKT +A ++ + A+DI+ ++R++ AK +V+ I D R A
Sbjct: 248 DAAAAPGGKTTQIAQYIADDATIIALDIHAHKIRLIEANAKRLRVSDKITAQVLDARQTA 307
Query: 399 DNSTVKCDKVLLDAPCSGLGVLSK 422
+ T K D++L+DAPCSG G+L +
Sbjct: 308 NQLTTKFDRILVDAPCSGFGLLRR 331
>gi|170016869|ref|YP_001727788.1| putative rRNA methylase [Leuconostoc citreum KM20]
gi|169803726|gb|ACA82344.1| Putative rRNA methylase [Leuconostoc citreum KM20]
Length = 450
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/324 (28%), Positives = 160/324 (49%), Gaps = 28/324 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L+D D RL+T +V G I+ R D+ + +K +EP + ++L +++ LD
Sbjct: 41 LNDSDKRLLTTLVYGVIQHRLTFDYWLTPFIKQKK----IEPWVRELLYTALFQLQYLDK 96
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQARAL 223
+P +A+ +E++ +AK G V IL + L D N++ P + L
Sbjct: 97 IPQHAIFNESIEVAKTLGHIGTAKFVTAILHNISRQGLPDINAIQNP---------IQRL 147
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR----KGVTRADLVMQLN 279
+ S PVW++ K G+ + +++ N P+ ++R N+ + V +A L
Sbjct: 148 SVEASLPVWLIETLVKQNGEAKTRQIIGSINDAPAQAIRVNTALSTDEAVEQALLDEHFT 207
Query: 280 LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGL-VVAVVDPQPGQSIV 338
+K S D V G +V + ++GL +QDESA L V A+ ++++
Sbjct: 208 FVK-----SKVADHAYVVTGG--HVAGSKAYQDGLLTLQDESAMLPVEALQITTQVKTVL 260
Query: 339 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398
D AAPGGKT +A ++ + A+DI+ ++R++ AK +V+ I D R A
Sbjct: 261 DAAAAPGGKTTQIAQYIADDATIIALDIHAHKIRLIEANAKRLRVSDKITAQVLDARQTA 320
Query: 399 DNSTVKCDKVLLDAPCSGLGVLSK 422
+ T K D++L+DAPCSG G+L +
Sbjct: 321 NQLTTKFDRILVDAPCSGFGLLRR 344
>gi|191638611|ref|YP_001987777.1| RRNA methylase () [Lactobacillus casei BL23]
gi|385820326|ref|YP_005856713.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
casei LC2W]
gi|385823520|ref|YP_005859862.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
casei BD-II]
gi|190712913|emb|CAQ66919.1| RRNA methylase (Putative) [Lactobacillus casei BL23]
gi|327382653|gb|AEA54129.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
casei LC2W]
gi|327385847|gb|AEA57321.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
casei BD-II]
Length = 446
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 113/382 (29%), Positives = 173/382 (45%), Gaps = 56/382 (14%)
Query: 94 GYVERTLG--FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLL 151
GY TL + L RD L+T+IV G I+ + LD + K ++ +
Sbjct: 22 GYSNLTLDHVINSHKLTPRDAGLLTNIVYGVIQHQLTLDFYLAPFIKGRK----LDNWIR 77
Query: 152 QILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLP 210
+L I Y++ LD +P AV ++ +AK G V G+LR P P
Sbjct: 78 CLLDIAVYQLQYLDKVPARAVFFDSTEIAKKLGHQGIAKFVTGVLRN----AQRTGFPDP 133
Query: 211 KLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVT 270
+ + L+ S PVW+V + T LG+ + ++ N SLR N+ K +T
Sbjct: 134 AAIAD---PVKRLSIESSTPVWLVEKLTAQLGEPKTRAILNVINVPAHASLRVNTTK-IT 189
Query: 271 RADLVMQLNLLKVPHELSLHLDEFIRVK----TGLQNVIQAGLLK------EGLCAVQDE 320
A L+ L EF +K T + + +G L +G +QDE
Sbjct: 190 PAALLASLK------------PEFPDLKESPLTPIGLIAPSGHLAGTSAFVKGEYTMQDE 237
Query: 321 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETA 378
S+ LV +D QPG ++D CAAPGGKT ++A L + G V A+D++ ++R++N+ A
Sbjct: 238 SSMLVAPSLDIQPGDVVLDACAAPGGKTTHIAQYLDPKQGGQVTALDLHANKVRLINKNA 297
Query: 379 KLHQVNSVIRTIHADLR----TFADNSTVKCDKVLLDAPCSGLGVLSKTCVGIGDWRIWK 434
K + I D R TF NS DK+L+DAPCSGLG++ R
Sbjct: 298 KRLGLTDRIHAQVLDARKVATTFPANS---FDKILVDAPCSGLGLI----------RRKP 344
Query: 435 SLRYCKTSFLMQHLCETKYLLL 456
++Y KT HL + + +L
Sbjct: 345 EIKYTKTPEDPAHLQQIQLAIL 366
>gi|55821413|ref|YP_139855.1| RNA-binding protein [Streptococcus thermophilus LMG 18311]
gi|55823338|ref|YP_141779.1| RNA-binding protein [Streptococcus thermophilus CNRZ1066]
gi|55737398|gb|AAV61040.1| RNA-binding protein [Streptococcus thermophilus LMG 18311]
gi|55739323|gb|AAV62964.1| RNA-binding protein [Streptococcus thermophilus CNRZ1066]
Length = 443
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 113/359 (31%), Positives = 177/359 (49%), Gaps = 44/359 (12%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D+D LVT+IV GT+ + L+ ++ + D +E + +L + Y++ LD
Sbjct: 43 LTDKDKALVTEIVYGTVARKITLEWILAHVIEDR---DKLEAWVYDLLLLSLYQLAYLDK 99
Query: 166 MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +AVV++ V +AK + GA LVN +LRKL +S PLP R R +
Sbjct: 100 IPSHAVVNDAVSIAKNRGNKKGAEKLVNAVLRKL------SSQPLPDPSKIKRVNKR-YS 152
Query: 225 TIYSHPVWMVRRWTKYLGQEEAI----KLMVWNN-----SDPSFSLRANSRKGVTRADLV 275
YS PVW+V++ + G+E A+ L V N +D S G R+DL
Sbjct: 153 VQYSLPVWLVKKLIEQYGEERALAIFQSLFVRNKASVRVTDVSRMEEIAEATGAERSDL- 211
Query: 276 MQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
+ L+K + D F KEGL +QDE++ LV + Q +
Sbjct: 212 SPVGLVKSSGYFA-GTDYF----------------KEGLLTIQDETSQLVAPTLAIQGME 254
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
I+D CAAPGGKT++MAS L+ G V A+D+ +L ++ E A+ + ++T D R
Sbjct: 255 EILDACAAPGGKTVHMASYLTS-GHVTALDLYDHKLALIKENAQRLGLADKVKTQKLDAR 313
Query: 396 TFAD-NSTVKCDKVLLDAPCSGLGVLSKT--CVGIGDWRIWKSLRYCKTSFLMQHLCET 451
T DK+L+DAPCSG+G++ + D + +KSL+ + L +C+T
Sbjct: 314 QVHQVFPTASFDKILVDAPCSGIGLIRRKPDIKYNKDLQDFKSLKSVQLDIL-SSVCQT 371
>gi|268593572|ref|ZP_06127793.1| ribosomal RNA small subunit methyltransferase B [Providencia
rettgeri DSM 1131]
gi|291310849|gb|EFE51302.1| ribosomal RNA small subunit methyltransferase B [Providencia
rettgeri DSM 1131]
Length = 427
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 162/324 (50%), Gaps = 30/324 (9%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
++++D+D L+ +I G +R+ L+ I L EK + + L ++ +G Y+++
Sbjct: 34 RNINDKDKALLQEICFGVLRYLPKLEWFISQLM--EKPLTGKQRTLHYLIMVGIYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A +P L+NG+LR + L + N+ +Q
Sbjct: 92 RIPPHAALAETVDGAVALKKPQLKGLINGVLRSF----QRQQVQLEERIANNTSQ----- 142
Query: 225 TIYSHPVWMVRR-WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
Y HP W+++R T Y E+ ++ NN P LR NS+ LNLL+
Sbjct: 143 --YLHPSWLLKRLQTAY--PEDWQSIIEANNQRPPMWLRVNSQHHTA----AQYLNLLEQ 194
Query: 284 PHELSLHLD----EFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVD 339
E++ HL IR+ V + ++G VQD SA +++PQ G+SI+D
Sbjct: 195 -SEITAHLHPSHPNAIRLDEPTA-VSRLPGFEDGWSTVQDVSAQGCAELLEPQNGESILD 252
Query: 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET-AKLHQVNSVIRTIHADLRTFA 398
CAAPGGKT ++ L+ + V A+DI++ RL+ + E +L Q VI+ +A
Sbjct: 253 LCAAPGGKTTHILE-LAPRANVIAVDIDEYRLKRVKENLIRLKQHAVVIQGDGTQPEKWA 311
Query: 399 DNSTVKCDKVLLDAPCSGLGVLSK 422
+ + D++LLDAPCS GV+ +
Sbjct: 312 KDQ--QFDRILLDAPCSATGVIRR 333
>gi|160939810|ref|ZP_02087157.1| hypothetical protein CLOBOL_04701 [Clostridium bolteae ATCC
BAA-613]
gi|158437244|gb|EDP15009.1| hypothetical protein CLOBOL_04701 [Clostridium bolteae ATCC
BAA-613]
Length = 455
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/317 (28%), Positives = 148/317 (46%), Gaps = 27/317 (8%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D +T V GT+ + +D +I + + + M+P + +LR+ Y+I+ +D +P
Sbjct: 47 DRSFITRAVEGTLEYLIQIDEVINR--YSKTKINKMKPFIRSLLRMSVYQILYMDRVPDS 104
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
AV +E V++A G VNG+LR + K+N + P L YS
Sbjct: 105 AVCNEAVKMAVKRHFSGLKGFVNGVLRTISREKENLTFDTPSLR-------------YSI 151
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP----H 285
P WM W K G+E+A K+ D +R N + RAD L LK
Sbjct: 152 PEWMYAMWEKEFGKEKAEKIAASFLEDKPTWVRCN----LHRADRESILASLKAQGTSVR 207
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
EL ++ I + G + ++G VQD ++ V + P+ I+D CAAPG
Sbjct: 208 ELPF-MESMIAID-GYDYLEGLDAFRKGWIQVQDVTSAFVGEIASPEKDSYIIDVCAAPG 265
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405
GK+L++A L G G+V A D+ + ++ E V + ++T+ D ++ K
Sbjct: 266 GKSLHLADKLEGTGMVEARDLTYQKTALIEENMARCGVTN-MKTLVWDALETDLSAMAKA 324
Query: 406 DKVLLDAPCSGLGVLSK 422
D V+ D PCSGLG++ +
Sbjct: 325 DIVIADLPCSGLGIIGR 341
>gi|78484536|ref|YP_390461.1| sun protein [Thiomicrospira crunogena XCL-2]
gi|78362822|gb|ABB40787.1| Ribosomal RNA small subunit methyltransferase B [Thiomicrospira
crunogena XCL-2]
Length = 436
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 94/318 (29%), Positives = 152/318 (47%), Gaps = 22/318 (6%)
Query: 108 DDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMP 167
D R+ ++V GT+RW+ L+ + L +K + + + Q++ +G Y+I+ +D P
Sbjct: 36 DRRERAFTQNLVLGTLRWQERLEAIRSHLL--KKPLKAKDEDVNQLILLGLYQILYMDTP 93
Query: 168 PYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIY 227
+A V E V L K +P A L+NG+LR L+D +S+ E D+ A Y
Sbjct: 94 EHAAVSETVNLTKSLKKPWARGLINGVLR--TFLRDKDSI----CEEVDKKPAYR----Y 143
Query: 228 SHPVWMVRRW-TKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHE 286
SHP W + Y E I + NN +LR N A L + L+ V +
Sbjct: 144 SHPQWFTKTIRNAYPDHWEQI--LSANNEPAPLTLRVNPLYQTREAFLAL-LSDQAVEAD 200
Query: 287 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 346
+ + I +K L ++ Q EG +VQD +A ++ PQP + I+D CAAPGG
Sbjct: 201 IHPKAPQGIVLKNSL-DITQLPTYDEGGFSVQDAAAQQAAYLLAPQPNEFILDACAAPGG 259
Query: 347 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--STVK 404
KT ++ Q V+A++ R+ L+E + + I A + D ++
Sbjct: 260 KTTHLLELSDNQAKVFALEKEPERIERLSENLYRLALTAEIEVGDA---SQPDQWWPEIQ 316
Query: 405 CDKVLLDAPCSGLGVLSK 422
DK+LLDAPCS G++ +
Sbjct: 317 FDKILLDAPCSATGIIRR 334
>gi|222153508|ref|YP_002562685.1| ribosomal RNA small subunit methyltransferase [Streptococcus uberis
0140J]
gi|222114321|emb|CAR43000.1| putative ribosomal RNA small subunit methyltransferase
[Streptococcus uberis 0140J]
Length = 440
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 98/326 (30%), Positives = 169/326 (51%), Gaps = 37/326 (11%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L+ +D L+T+IV GT+ + L+ + + D + ++ + +L I Y+++ LD
Sbjct: 40 LNAKDKALITEIVYGTVSRKLTLEWHLSHVIEDR---NRLDKWVYYLLMISLYQLLYLDK 96
Query: 166 MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A+V++ V +AK GA VN +LR+L N+ LP P L + + + +
Sbjct: 97 VPQHAIVNDAVNIAKNRGNNRGAEKFVNAVLRQLT----NHPLPDPSL---IKRKNKRYS 149
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
+YS P W+V + G+E A+K+M + + SLR V+ L+ +++
Sbjct: 150 ILYSIPTWLVIKLIDQFGEERALKIMESLSLNSKISLR------------VINLDKMEII 197
Query: 285 HELSLHLDEFIRVKTGL--QNVIQA--GLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
E +L + + GL +N A + G +QDES+ LV + Q ++D
Sbjct: 198 KE-ALDAEMSLLSPCGLTKENGYMALHDFFQRGDITIQDESSQLVAPTLAIQENDIVLDA 256
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR----T 396
C+APGGKT +MAS L G V A+DI++ +L ++ E A+ ++ I T D R
Sbjct: 257 CSAPGGKTSHMASYLKT-GKVVALDIHEHKLDLVRENAERLGLSEKIETRLLDARQVHEV 315
Query: 397 FADNSTVKCDKVLLDAPCSGLGVLSK 422
F +S DK+L+DAPCSG+G++ +
Sbjct: 316 FGPDS---FDKILVDAPCSGIGLIRR 338
>gi|94994842|ref|YP_602940.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
MGAS10750]
gi|94548350|gb|ABF38396.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
MGAS10750]
Length = 440
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 161/329 (48%), Gaps = 37/329 (11%)
Query: 104 TKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
+K L +D L+T+IV GT+ + L+ L H K ++ + +L + Y+++
Sbjct: 37 SKALSAKDRALLTEIVYGTVSRKISLE---WYLAHYVKDRDKLDKWVYYLLMLSLYQLIY 93
Query: 164 LD-MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
LD +P +A+V++ V +AK + GA VN ILR+ S PLP +E R + +
Sbjct: 94 LDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAILRQFT------SHPLPDMETIKR-RNK 146
Query: 222 ALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLL 281
+ YS PVW+V++ G + A+ +M S +R+ + VT L L
Sbjct: 147 YYSVKYSLPVWLVKKLEDQFGSDRAVAIM------ESLFMRSKASTRVTDP-----LKLE 195
Query: 282 KVPHELSLHLDEFIRVKTGLQ----NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 337
+V +L + + TGL + + G +QDES+ LV ++ I
Sbjct: 196 EVAE--ALDAERSLLSATGLTKASGHFAASDYFTNGDITIQDESSQLVAPTLNIDGDDII 253
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT- 396
+D C+APGGKT ++AS L G V A+D+ +L ++ E A V I T D R
Sbjct: 254 LDACSAPGGKTSHIASYLK-TGKVIALDLYDHKLELVKENANRLGVADNIETRKLDAREV 312
Query: 397 ---FADNSTVKCDKVLLDAPCSGLGVLSK 422
F +S DK+L+DAPCSG+G++ +
Sbjct: 313 HRHFEKDS---FDKILVDAPCSGIGLIRR 338
>gi|417916450|ref|ZP_12560029.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
mitis bv. 2 str. SK95]
gi|342829657|gb|EGU64006.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
mitis bv. 2 str. SK95]
Length = 437
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 109/332 (32%), Positives = 165/332 (49%), Gaps = 59/332 (17%)
Query: 111 DLRLVTDIVGGTI------RWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
D LVT+IV GT+ W YL H I + ++ L +L + Y++ L
Sbjct: 42 DKGLVTEIVYGTVARKLTLEW--YLSHFI-------EDRDKLDNWLYILLLLSAYQLRYL 92
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
D +P +AVV+E V +AKV + G+ LVN +LR++ L++ P ++ R R
Sbjct: 93 DKVPNHAVVNEAVEIAKVR-KKGSEKLVNAVLRRI--LREG----WPDIDSIKRKNKRD- 144
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAI----KLMVWNNSDPSFSLRANSRKGVTRADLVMQLN 279
+ YS PVW+V + + G+E A L+V N + S + SRK +A L +
Sbjct: 145 SIAYSLPVWLVSKLKEEYGEERAQAIFESLLVRNKA--SIRVTDLSRKEEIKALLEATDS 202
Query: 280 LLKVPHELSLHLDEFIRVKTGLQNVIQAG------LLKEGLCAVQDESAGLVVAVVDPQP 333
LL TGL V + G L EG +QDES+ LV + Q
Sbjct: 203 LLAT---------------TGL--VKEQGHFAGHDLFAEGAITIQDESSQLVAPTLRLQG 245
Query: 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD 393
+ ++D CAAPGGKT++MAS L+ G V A+D+ +L ++ E A+ V ++T D
Sbjct: 246 DEQVLDACAAPGGKTVHMASYLTS-GKVTALDLYDHKLDLIQENAQRLGVADRVQTQKLD 304
Query: 394 LR---TFADNSTVKCDKVLLDAPCSGLGVLSK 422
R F D + DK+L+DAPCSG+G+L +
Sbjct: 305 ARKVHEFFDRDSF--DKILVDAPCSGIGLLRR 334
>gi|417922932|ref|ZP_12566415.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
mitis SK569]
gi|342837462|gb|EGU71647.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
mitis SK569]
Length = 437
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 99/317 (31%), Positives = 156/317 (49%), Gaps = 29/317 (9%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D LVT+IV GT+ + L+ + D S L +L + Y++ LD +P +
Sbjct: 42 DKGLVTEIVYGTVARKLTLEWYLSHFIEDRDQLDSW---LYVLLLMSAYQLRYLDKIPDH 98
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
AVV+E V LAKV + G+ LVN +LR++ L++ P + R R + YS
Sbjct: 99 AVVNEAVELAKVR-KKGSEKLVNAVLRRI--LREG----WPDITSIKRKNKRD-SIAYSL 150
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSL 289
PVW+V + + G+E A + S +R + VT ++ L + SL
Sbjct: 151 PVWLVAKLKEEYGEERAQAIF------ESLLVRNKASIRVTDLSRKEEIQALLEASDSSL 204
Query: 290 HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 349
++ + L +G +QDES+ LV +D Q + ++D CAAPGGKT
Sbjct: 205 SPSGLVKEQGHFAG---HDLFADGAITIQDESSQLVAPTLDLQGNEKVLDACAAPGGKTA 261
Query: 350 YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT----FADNSTVKC 405
++AS L+ G V A+D+ +L ++ E A+ V ++T D R F NS
Sbjct: 262 HIASYLT-TGQVTALDLYDHKLDLIQENAQRLGVADRVQTQKLDARKVHEFFGQNS---F 317
Query: 406 DKVLLDAPCSGLGVLSK 422
DK+L+DAPCSG+G+L +
Sbjct: 318 DKILVDAPCSGIGLLRR 334
>gi|315612653|ref|ZP_07887565.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
sanguinis ATCC 49296]
gi|315315240|gb|EFU63280.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
sanguinis ATCC 49296]
Length = 437
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 116/382 (30%), Positives = 182/382 (47%), Gaps = 65/382 (17%)
Query: 56 EVSPHRAVSAVRLMRIQFGGAFADL-LNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRL 114
+V R+++ L + A++++ LNK KGS L + D L
Sbjct: 3 KVETARSLALAVLEDVFINQAYSNIALNKHLKGS-----------------QLSEADKSL 45
Query: 115 VTDIVGGTI------RWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MP 167
VT+IV GT+ W YL H I + ++ L +L + Y++ LD +P
Sbjct: 46 VTEIVYGTVARKLTLEW--YLSHFI-------EDRDKLDNWLYILLLLSAYQLRYLDKIP 96
Query: 168 PYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIY 227
+AVV+E V LAK + G+ LVN +LR++ L++ S ++ R R + Y
Sbjct: 97 NHAVVNEAVELAK-ERKKGSEKLVNAVLRRI--LREGWS----DIDSIKRKNKRD-SIAY 148
Query: 228 SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHEL 287
S PVW+V + + G+E A + SL ++ + ADL + + V
Sbjct: 149 SLPVWLVSKLKEEYGEERAQAIFK--------SLLVRNKASIRVADLSRKEEIKAV---- 196
Query: 288 SLHLDEFIRVKTGLQNVIQAG------LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
L + TGL V + G L EG +QDES+ LV +D Q + ++D C
Sbjct: 197 -LEATDSPLAATGL--VKEQGHFAGHDLFAEGAITIQDESSQLVAPTLDLQGDEQVLDAC 253
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-N 400
AAPGGKT +MAS L+ G V A+D+ +L ++ E A+ V ++T D R +
Sbjct: 254 AAPGGKTAHMASYLTS-GKVTALDLYDHKLDLIQENAERLGVADRVQTQKLDARKVHEFF 312
Query: 401 STVKCDKVLLDAPCSGLGVLSK 422
S DK+L+DAPCSG+G+L +
Sbjct: 313 SRDSFDKILVDAPCSGIGLLRR 334
>gi|419720367|ref|ZP_14247603.1| ribosomal RNA small subunit methyltransferase B
[Lachnoanaerobaculum saburreum F0468]
gi|383303467|gb|EIC94916.1| ribosomal RNA small subunit methyltransferase B
[Lachnoanaerobaculum saburreum F0468]
Length = 444
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 87/320 (27%), Positives = 156/320 (48%), Gaps = 37/320 (11%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSS---MEPLLLQILRIGFYEIVKLD-M 166
D + +V G + +R LD +I K ++ ++P++ +ILR+ Y+++ +D +
Sbjct: 42 DRGFFSKVVHGVVEYRLQLDFII-------KKYNGGKRIKPVIREILRMAIYQMLYMDRV 94
Query: 167 PPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI 226
P A+++E V L K+ VNGILRK+ K+ S D R
Sbjct: 95 PDRAIINEAVNLVKLRRLTALTGFVNGILRKISSEKETVSF--------DDISIR----- 141
Query: 227 YSHPVWMV----RRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
YS P +++ KY + L + P S+R N+ K D+V +L
Sbjct: 142 YSMPEFLLDIIKENTDKYFDK----TLEYFLEGRP-VSIRVNTSKSKV-TDVVKELEESN 195
Query: 283 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
+ E S D + ++ G V ++K G C + D S+ ++ ++ P + ++D CA
Sbjct: 196 IRVERSSLNDTVLYIR-GFDKVDDISVIKSGKCYITDVSSSMIAELIIPDNIKKVLDVCA 254
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402
APGGK+ +A + + L+Y+ DI++ ++ ++ E AK+ ++I + AD R F D
Sbjct: 255 APGGKSFLLADKIDNEALIYSCDISENKVNLITENAKVQGFKNIIPLV-ADARVF-DERF 312
Query: 403 VKCDKVLLDAPCSGLGVLSK 422
+ D V+ D PCSG+G++ K
Sbjct: 313 AESDLVVADLPCSGIGIIGK 332
>gi|386743663|ref|YP_006216842.1| 16S rRNA methyltransferase B [Providencia stuartii MRSN 2154]
gi|384480356|gb|AFH94151.1| 16S rRNA methyltransferase B [Providencia stuartii MRSN 2154]
Length = 428
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 92/320 (28%), Positives = 157/320 (49%), Gaps = 22/320 (6%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K+++++D L+ +I G +R+ L+ + L EK + + L ++ +G Y+++
Sbjct: 34 KNINEKDKSLLQEICFGVLRYLPKLEWFVAQLM--EKPLTGKQRTLHYLIMVGIYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR L + N+ +Q
Sbjct: 92 RIPPHAALAETVNGAVALKRPQLKGLINGVLRSF----QRQQTQLEERNTNNSSQ----- 142
Query: 225 TIYSHPVWMVRR-WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
Y HP W+++R Y + + I + NN P LR NS+ T L ++
Sbjct: 143 --YLHPSWLLKRLQNAYPDKWQTI--IDANNQRPPMWLRVNSQHH-TAEQYQKYLEENEI 197
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
EL H I++ +V + +EG VQD SA +++PQ ++I+D CAA
Sbjct: 198 ASELHPHHPCAIKLSEPT-SVTRLPGFEEGWATVQDVSAQGCAELLEPQNHETILDLCAA 256
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNET-AKLHQVNSVIRTIHADLRTFADNST 402
PGGKT ++ L+ + V A+DI++ RL+ + E +L Q +VI+ +A+
Sbjct: 257 PGGKTTHILE-LAPKAHVVAVDIDEHRLKRVKENLQRLQQQAAVIQGDGTKPEEWANGQL 315
Query: 403 VKCDKVLLDAPCSGLGVLSK 422
D++LLDAPCS GV+ +
Sbjct: 316 F--DRILLDAPCSATGVIRR 333
>gi|421276664|ref|ZP_15727485.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
mitis SPAR10]
gi|395876870|gb|EJG87942.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
mitis SPAR10]
Length = 437
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 96/314 (30%), Positives = 155/314 (49%), Gaps = 23/314 (7%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D LVT++V GT+ + L+ + D S L +L + Y++ LD +P +
Sbjct: 42 DKGLVTELVYGTVARKLTLEWYLSHFIEDRDKLDSW---LYVLLLMSVYQLQYLDKLPDH 98
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
AVV+E V +AK+ + G+ LVN +LR++ L++ LP R R + YS
Sbjct: 99 AVVNEAVEIAKLR-KKGSEKLVNAVLRRI--LREG----LPDTASIKRKNKRD-SIAYSL 150
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSL 289
PVW+V + + G+E A + S R + VT L ++ L + +L
Sbjct: 151 PVWLVSKLKEEYGEERAQAIF------ESLLQRNKASIRVTDLSLKEEIKALLDASDSAL 204
Query: 290 HLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTL 349
++ + L EG +QDES+ LV +D Q + ++D CAAPGGKT
Sbjct: 205 SASGLVKEQGHFAG---HDLFAEGAITIQDESSQLVAPTLDLQGEEQVLDACAAPGGKTA 261
Query: 350 YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCDKV 408
+MAS L+ G V A+D+ +L ++ E A+ V ++T D R + + DK+
Sbjct: 262 HMASYLT-TGQVTALDLYDHKLTLIQENAQRLGVADRVQTQKLDARKVHEFFGKDQFDKI 320
Query: 409 LLDAPCSGLGVLSK 422
L+DAPCSG+G+L +
Sbjct: 321 LVDAPCSGIGLLRR 334
>gi|422851005|ref|ZP_16897675.1| RNA methyltransferase Sun [Streptococcus sanguinis SK150]
gi|325695223|gb|EGD37124.1| RNA methyltransferase Sun [Streptococcus sanguinis SK150]
Length = 438
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 100/326 (30%), Positives = 159/326 (48%), Gaps = 39/326 (11%)
Query: 107 LDDRDLRLVTDIVGGTI------RWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYE 160
L+ D LVT++V GT+ W YL HLI + ++ L +L + Y+
Sbjct: 39 LNQADKGLVTELVYGTVARKITLEW--YLSHLI-------EDRDKLDNWLYILLMLSLYQ 89
Query: 161 IVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
++ LD +P +AVV E V +AK+ R G+ N +LR++ + E R
Sbjct: 90 MLYLDKIPQHAVVHEAVEIAKIRKR-GSEKFANALLRRI------EREGVADFETIKRKN 142
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLM--VWNNSDPSFSLRANSRKGVTRADLVMQ 277
R + YS PVW+V+ + G+E A+ + ++ S S + SRK R L +
Sbjct: 143 KR-YSIQYSLPVWLVKDLIEEYGEERALAIFASLFVRSKASIRVTDMSRKAELRQLLGAE 201
Query: 278 LNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 337
+LL P L F G Q L + G +QDES+ LV +D + + I
Sbjct: 202 DSLLS-PSALFKKQGHF----AGHQ------LFESGAITIQDESSQLVAPTLDIEGEEQI 250
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD-LRT 396
+D C+APGGKT++MAS L+ G + A+D+ +L ++ E A+ + I T D +
Sbjct: 251 LDACSAPGGKTVHMASYLTN-GHITALDLYDHKLELVEENAERLGLADKITTKKLDATKV 309
Query: 397 FADNSTVKCDKVLLDAPCSGLGVLSK 422
F DK+L+DAPCSG+G++ +
Sbjct: 310 FETFGPDAFDKILVDAPCSGIGLIRR 335
>gi|402312254|ref|ZP_10831183.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
bacterium ICM7]
gi|400370313|gb|EJP23301.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
bacterium ICM7]
Length = 446
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 93/320 (29%), Positives = 163/320 (50%), Gaps = 37/320 (11%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSS---MEPLLLQILRIGFYEIVKLD-M 166
D + +V G + +R LD +I K ++S ++P++ +ILR+ Y+++ +D +
Sbjct: 44 DRGFFSKVVHGVVEYRLQLDDII-------KKYNSGKRVKPVIREILRMSVYQMLYMDRV 96
Query: 167 PPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI 226
P AV++E V L K+ G VNGILRK+ S +L+ +D L+
Sbjct: 97 PDRAVINEAVNLVKIKRLQGLTGFVNGILRKI-------SSEKEELKFDD------LSIR 143
Query: 227 YSHP---VWMVRRWT-KYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLK 282
YS P + ++R T KY E ++ + N S+R N+ K + D++ +L
Sbjct: 144 YSMPELILNIIRDNTGKYFN--ETLEYFLKNGP---LSVRVNTSKS-SVEDVIKELEAKN 197
Query: 283 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
+ + S L+ I TG V ++K G C + D S+ ++ V+ + + VD CA
Sbjct: 198 IKVKRS-GLNSDILYITGFDRVDDIEVIKSGKCYITDTSSSMISKVLGVRDIKKCVDVCA 256
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402
APGGK+ +A L +Y+ D+++ ++ ++ E AK+ +++I T+ AD R F D
Sbjct: 257 APGGKSFLLADKLDKSLKIYSCDVSENKVELIRENAKVQGFSNIIPTV-ADARIF-DERF 314
Query: 403 VKCDKVLLDAPCSGLGVLSK 422
D +L D PCSG+G++ K
Sbjct: 315 SDADLILADLPCSGIGIIGK 334
>gi|359781164|ref|ZP_09284389.1| 16S rRNA methyltransferase B [Pseudomonas psychrotolerans L19]
gi|359371224|gb|EHK71790.1| 16S rRNA methyltransferase B [Pseudomonas psychrotolerans L19]
Length = 433
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 101/323 (31%), Positives = 153/323 (47%), Gaps = 30/323 (9%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDM 166
+D RD L D+ GT RW+ L L L +K F + + L +L IG Y++ +
Sbjct: 32 VDPRDRALAQDLAFGTARWQPRLSLLAEKLM--DKPFKAGDRDLEALLLIGLYQLFHTRI 89
Query: 167 PPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI 226
P +A + E V + A L+N +LR+ ++ +SL LP LE + A+
Sbjct: 90 PAHAAIGETVGCVDNLKKSSAKGLLNAVLRRAQ--REYDSL-LPALEHDPAAR------- 139
Query: 227 YSHPVWMVR----RWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKG--VTRADLVMQLNL 280
+HP W+ + RW + Q EAI NN P LR N R+G + +
Sbjct: 140 LAHPRWLQKALKARWPE---QWEAIATA--NNLHPPLILRVNRRQGGRDAYLADLAAAGI 194
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+P S + IR+ Q+V G +VQDE+A L +++ PGQ ++D
Sbjct: 195 EAMPCAFSA---DGIRLLQP-QDVTALPGFAAGRLSVQDEAAQLAAELLELAPGQRVLDA 250
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD- 399
CAAPGGKT ++ G V A+D + GRL + + L ++ RT+ AD R AD
Sbjct: 251 CAAPGGKTCHLLEREPGLAEVVALDADAGRLERVEQN--LARLGLTARTLAADGRAVADW 308
Query: 400 NSTVKCDKVLLDAPCSGLGVLSK 422
++LLDAPCS GV+ +
Sbjct: 309 WDGTPFQRILLDAPCSATGVIRR 331
>gi|20093735|ref|NP_613582.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
gi|19886632|gb|AAM01512.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
Length = 449
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 89/282 (31%), Positives = 135/282 (47%), Gaps = 20/282 (7%)
Query: 144 SSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNL-VNGILRKLVLLK 202
S + PL ++ + E++ P V D R AK G + V+G++ L
Sbjct: 70 SELPPLERALVMVAANEVLYEGKHPAPVTDSATRAAKEL---GLNHRRVHGVVADL---- 122
Query: 203 DNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSF-SL 261
+ P P+ E DR L Y HP W V ++ L ++E +LM +N P + +
Sbjct: 123 EEYERPEPEDE-IDR-----LCLEYHHPRWFVEKFGALLDEDELKELMEVHNEPPEYYTF 176
Query: 262 RANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQ-NVIQAGLLKEGLCAVQDE 320
R N+ D++ + E ++D IRVK G + + +EG QDE
Sbjct: 177 RVNT-TAADVEDVLREFEEHGFEVERGEYVDYCIRVKKGQPLRLEELECWREGHIVPQDE 235
Query: 321 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKL 380
+A LV +++PQPG+ I D CAAPGGKT ++A + + A+D+++ RLR L A+
Sbjct: 236 AAALVTEILNPQPGERIADLCAAPGGKTTHIAQLTEDEAEILAVDVSRVRLRRLERFAE- 294
Query: 381 HQVNSVIRTIHADLRTFADNSTV--KCDKVLLDAPCSGLGVL 420
V I + AD+R N K D+VLLD PCS LG L
Sbjct: 295 RMVFENIEVLRADVRRLGRNPRYVGKFDRVLLDPPCSSLGTL 336
>gi|332638217|ref|ZP_08417080.1| 16S rRNA methyltransferase B [Weissella cibaria KACC 11862]
Length = 457
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 168/339 (49%), Gaps = 47/339 (13%)
Query: 103 RTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIV 162
+ +LD+RD+ L+T +V G I+ R L++ + K ++ + ++L I +++
Sbjct: 43 KQAELDERDVHLMTTMVYGVIQRRMTLEYWLTPFV---KKPEKLDAWVRELLYISLFQMK 99
Query: 163 KLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQAR 221
LD +P +A+ DE + +AK G V G+L + DR R
Sbjct: 100 FLDKVPTHAIFDEAINIAKRRGHDGVRKFVTGVLHAI-----------------DREGVR 142
Query: 222 ALATIY----------SHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN-SRKGVT 270
+ I S P W++ + T LG E+A ++ + N P+ S R N + V
Sbjct: 143 SFDEITDKVERLSIEASLPEWLINQLTTELGWEKASRIAMAINDAPAQSARVNLAVTTVA 202
Query: 271 RADLVMQLNLLKV-PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVV 329
A +++ V P +++ + + + G +V + K+GL +QDESA L+ +
Sbjct: 203 EATDILEAEGFTVTPSKVT---PDALLLSGG--HVASSQAFKDGLVTLQDESAMLMAPSL 257
Query: 330 DPQPGQSIVDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETA-KLHQVNSV 386
D P ++D AAPGGKT +A+ L+ G+V A+DI+ ++ ++N+ A +LH + V
Sbjct: 258 DIHPDMQVLDAAAAPGGKTTQIATYLNATEGGIVEALDIHDHKVGLINQNAERLHVADRV 317
Query: 387 -IRTIHADL--RTFADNSTVKCDKVLLDAPCSGLGVLSK 422
RT+ A FAD + D++L+DAPCSG G+L +
Sbjct: 318 HARTLDARKVDEAFADE---QFDRILVDAPCSGFGLLRR 353
>gi|374307505|ref|YP_005053936.1| ribosomal RNA small subunit methyltransferase B [Filifactor alocis
ATCC 35896]
gi|291166482|gb|EFE28528.1| ribosomal RNA small subunit methyltransferase B [Filifactor alocis
ATCC 35896]
Length = 440
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 96/318 (30%), Positives = 159/318 (50%), Gaps = 14/318 (4%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L DRD T++V GT+ ++LD++I + + S E +L IL + Y+I +D
Sbjct: 35 LIDRDRVFYTELVYGTLENIKFLDYVIDKFSNVKVDKLSKE--VLTILEVSLYQIHYMDG 92
Query: 166 MPPYAVVDENVRLAKVALRPG-AGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+ +AVV+E V LAKV + VNGILR + L++ N+ + G R L+
Sbjct: 93 VQNFAVVNEMVNLAKVVWHNARIPSFVNGILRNI--LRNPNAFDILLPPGKKR-----LS 145
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
YS W+ E+A ++ + P+ LR N K VT L +L L V
Sbjct: 146 IEYSVSEWISELLINQYSLEKAEDILYALSQHPAIYLRVNMNK-VTTDRLKEKLCSLGVD 204
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
E + D ++ K + + +G +QD S+ + + P+ G+ I+D CAAP
Sbjct: 205 TEKVVGFDNILQTK-HFNGIEKNEYFLKGYFTIQDISSVCCIKALSPKTGEKILDICAAP 263
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404
GGKT +A + +G+V++ D +L +++++AK +++ I D F +N
Sbjct: 264 GGKTTAIAEIIGEKGIVFSNDKGVNKLNLISQSAKRLCLDN-IELSDIDACEFQENWKEM 322
Query: 405 CDKVLLDAPCSGLGVLSK 422
D+VL+D PCSGLGV+ +
Sbjct: 323 FDRVLVDVPCSGLGVIRR 340
>gi|306825761|ref|ZP_07459100.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp.
oral taxon 071 str. 73H25AP]
gi|304432122|gb|EFM35099.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp.
oral taxon 071 str. 73H25AP]
Length = 437
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 106/329 (32%), Positives = 161/329 (48%), Gaps = 53/329 (16%)
Query: 111 DLRLVTDIVGGTI------RWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
D LVT+IV GT+ W YL H I + ++ L +L + Y++ L
Sbjct: 42 DKGLVTEIVYGTVARKLTLEW--YLSHFI-------EDRDKLDNWLYVLLLMSVYQVRFL 92
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
D +P +AVV+E V LAKV + G+ LVN +LR++ L++ P + R R
Sbjct: 93 DKVPDHAVVNEAVELAKVR-KQGSEKLVNAVLRRI--LREG----WPDIATIKRKNKRD- 144
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
+ YS PVW+V + + G+E A + SL ++ + DL + + V
Sbjct: 145 SIAYSLPVWLVSKLKEEYGEERAQAIFK--------SLLVRNKASIRVTDLSRKEEIKAV 196
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAG------LLKEGLCAVQDESAGLVVAVVDPQPGQSI 337
L + TGL V + G L EG +QDES+ LV +D Q + +
Sbjct: 197 -----LEATDSPLAATGL--VKEQGHFAGHDLFAEGAITIQDESSQLVAPTLDLQGDEQV 249
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT- 396
+D CAAPGGKT +MAS L+ G V A+D+ +L ++ E A+ V ++T D R
Sbjct: 250 LDACAAPGGKTAHMASYLTS-GKVTALDLYDHKLDLIQENAQRLSVADRVQTQKLDARKV 308
Query: 397 ---FADNSTVKCDKVLLDAPCSGLGVLSK 422
F +S DK+L+DAPCSG+G+L +
Sbjct: 309 HEFFGRDS---FDKILVDAPCSGIGLLRR 334
>gi|228476962|ref|ZP_04061600.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
salivarius SK126]
gi|228250981|gb|EEK10152.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
salivarius SK126]
Length = 440
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 103/328 (31%), Positives = 168/328 (51%), Gaps = 41/328 (12%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D+D LVT+IV GT+ + L+ ++ + D +EP + +L + Y++ LD
Sbjct: 40 LTDKDKALVTEIVYGTVAHKITLEWILAHVIEDR---DKLEPWVYDLLLLSLYQLAYLDK 96
Query: 166 MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +AVV++ V +AK + GA LVN +LRKL +S PLP R R +
Sbjct: 97 IPAHAVVNDAVAIAKNRGNKKGAEKLVNAVLRKL------SSQPLPDPSQIKRVNKR-YS 149
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
YS PVW+V++ G++ A+ + S +R + VT A + ++
Sbjct: 150 VQYSLPVWLVKKLIDQYGEDRALAIF------QSLFVRNKASVRVTDASRLEEI------ 197
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLL------KEGLCAVQDESAGLVVAVVDPQPGQSIV 338
E + + + GL V +G KEGL +QDE++ LV + Q + I+
Sbjct: 198 -EEATGAERSVLSPVGL--VKSSGYFAGTDYFKEGLLTIQDETSQLVAPTLGIQGEEEIL 254
Query: 339 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL---- 394
D CAAPGGKT++MAS L+ G V A+D+ +L ++ E A+ + ++T D
Sbjct: 255 DACAAPGGKTVHMASYLTS-GHVTALDLYDHKLALIEENAQRLGLADKVKTQKLDASQVH 313
Query: 395 RTFADNSTVKCDKVLLDAPCSGLGVLSK 422
+ F +S DK+L+DAPCSG+G++ +
Sbjct: 314 QVFPADS---FDKILVDAPCSGIGLIRR 338
>gi|307132808|ref|YP_003884824.1| ribosomal RNA small subunit methyltransferase B [Dickeya dadantii
3937]
gi|306530337|gb|ADN00268.1| Ribosomal RNA small subunit methyltransferase B [Dickeya dadantii
3937]
Length = 431
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 159/323 (49%), Gaps = 28/323 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLD-HLICLLCHDEKTFSSMEPLLLQILRIGFYEIVK 163
+D+ ++D L+ +I G +R LD HL L+ K + + +L +L +G Y+++
Sbjct: 34 RDISEKDRGLLQEICFGVLRVLPQLDWHLRQLMA---KPLTGKQKVLHYLLMVGLYQLIH 90
Query: 164 LDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
+PP+A + E V A RP L+NG+LR+ +D +L+ N AR
Sbjct: 91 TRIPPHAALAETVNGAVALKRPQLKGLINGVLRQFQRQQDELQQ---RLQNNP---AR-- 142
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA---DLVMQLNL 280
Y+HP W+++R K Q+ +++ NN P LR N R+ TRA L+ + +
Sbjct: 143 ---YAHPDWLLQRLKKAYPQQWE-RIVEANNQHPPMWLRVN-RQHHTRAAYLALLQEKEI 197
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
PH + IR+ T V Q ++G VQD SA + + PQ + I+D
Sbjct: 198 TAYPHAF---YPDAIRLGTPC-AVNQLPGFEQGWVTVQDASAQGCIHWLAPQDHEEILDL 253
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
CAAPGGKT ++ + V A+D+++ RL+ + E L ++ D RT +
Sbjct: 254 CAAPGGKTTHILEA-APHAHVLAVDVDEQRLKRVREN--LQRLGQHAEVKCGDGRTPTEW 310
Query: 401 STVKC-DKVLLDAPCSGLGVLSK 422
K D++LLDAPCS GV+ +
Sbjct: 311 CGDKLFDRILLDAPCSATGVIRR 333
>gi|304384751|ref|ZP_07367097.1| ribosomal RNA small subunit methyltransferase B [Pediococcus
acidilactici DSM 20284]
gi|304328945|gb|EFL96165.1| ribosomal RNA small subunit methyltransferase B [Pediococcus
acidilactici DSM 20284]
Length = 444
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 92/319 (28%), Positives = 158/319 (49%), Gaps = 17/319 (5%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLD-HLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
DL + D L+T++V G ++ R +D +L L E+T ++ +LR +++ L
Sbjct: 37 DLSEVDKHLLTELVYGVLQHRLTIDFYLANFLQRPEQT----PRWVINLLRTAIFQMEFL 92
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
D +P +A+ +E + +AK G +V G+LR + +P L + L
Sbjct: 93 DRVPTFAIFNETIEIAKRRGSDGVRKMVTGVLRSYQRQGTPSLDSIPDL-------TQRL 145
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
AT YS W+V + LG+ + K++ N S+R N + T A + Q +
Sbjct: 146 ATEYSVASWIVDQLLYELGENKCRKILDSINRPAHLSVRINPIQRSTAA--IRQSLSEEY 203
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
+ SL + +R++ G + Q+ + G QDESA LV + GQ ++D CAA
Sbjct: 204 DVQESLLATDGLRLQNG-PGLAQSASFQAGEVIAQDESAMLVGETMQLATGQKVLDACAA 262
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403
PGGKT +A + G V A DI + R R++ + A+ + +++ +H D T
Sbjct: 263 PGGKTTQLAQKVGPDGQVIAWDIYESRTRLIQQNARRMHLTNIVTEVH-DATTPCPELKE 321
Query: 404 KCDKVLLDAPCSGLGVLSK 422
+ D++L+DAPCSG+G+L +
Sbjct: 322 EFDRILVDAPCSGIGLLRR 340
>gi|427392427|ref|ZP_18886432.1| ribosomal RNA small subunit methyltransferase B [Alloiococcus
otitis ATCC 51267]
gi|425731388|gb|EKU94206.1| ribosomal RNA small subunit methyltransferase B [Alloiococcus
otitis ATCC 51267]
Length = 463
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 102/342 (29%), Positives = 160/342 (46%), Gaps = 25/342 (7%)
Query: 90 DNEMGYVERTLGFRTKDLD--DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSME 147
D E GY + R ++ D L+T +V G ++ + LD + K ++
Sbjct: 22 DQEAGYANLEVNARLDKMNASQEDKNLMTALVYGVLQHQYLLDFYLEPYIKKPK---KLQ 78
Query: 148 PLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS 206
+ Q+LR+ Y++V LD +P YA ++E V+ AK G LVNG+LR L+ +
Sbjct: 79 AWVRQVLRLAVYQLVFLDHIPDYAAINEAVQYAKKRGHKGVSGLVNGVLRNF--LRHDLR 136
Query: 207 LPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR 266
P + DR + YS P W+V + GQ+ AI + N SLR N
Sbjct: 137 NPKDLADPVDR-----IRVSYSLPKWLVDKLITQYGQKTAIDMAASYNKPAKLSLRVNLD 191
Query: 267 KGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVV 326
K V+R + QL + S + V GL L + G +QDESA LV
Sbjct: 192 K-VSREEACTQLEASGYQVQKSDLAPCGLIVAGGLPT--SHPLYQAGAIRIQDESAMLVG 248
Query: 327 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVN 384
+D + + D CA PGGK+ ++AS L + G +YA DI +L ++ ++ +
Sbjct: 249 LALDLKSHYKVADLCAGPGGKSGHIASYLKAEAGGQLYASDIYDHKLDLIEDSLESQGYA 308
Query: 385 SVIRTIHADLR----TFADNSTVKCDKVLLDAPCSGLGVLSK 422
S+ + D R + DN D++L+DAPCSG+G+L +
Sbjct: 309 SLAQVKKLDGRIAGQVYPDNY---FDRILIDAPCSGMGLLRR 347
>gi|366089306|ref|ZP_09455779.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus acidipiscis
KCTC 13900]
Length = 448
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 102/348 (29%), Positives = 169/348 (48%), Gaps = 34/348 (9%)
Query: 91 NEMGYVERTLGFRTKDLDD---------RDLRLVTDIVGGTIRWRRYLDHLICLLCHDEK 141
N++ +E+ + K +D RD+ L T++V GTI+ + LD + K
Sbjct: 15 NDLTRIEKENSYSNKVVDQTVAAGKLVGRDINLYTNLVYGTIQNKLTLDFFLKPFL---K 71
Query: 142 TFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL 200
++ + ++LRI Y++ LD +P +A+ +E + +AK G V G+L +
Sbjct: 72 KPKKLDLWVKELLRISVYQLGYLDRIPEHAIFNEAIEIAKQMGHEGTRRFVTGVLHAV-- 129
Query: 201 LKDNNSLPLPKL-EGNDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSF 259
+ LPK+ E D + ++ T S P W+V R L ++ L+ P+
Sbjct: 130 ----SRQGLPKISEIKDPVEKLSVQT--STPRWLVDRLLIELDPKKVSSLLQSTLKTPAQ 183
Query: 260 SLRANSRKGVTRADLVMQL----NLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLC 315
S+R N++ ++ V Q+ P +S + + V+ G + Q+ K G
Sbjct: 184 SVRVNNK--ISDPKEVQQILKSEGFDVSPSRVSPAV---LLVQGGF--IPQSRAYKAGQV 236
Query: 316 AVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN 375
VQDESA L V ++ QP ++D CAAPGGKT +A L+ G V A+DI+K +LR++
Sbjct: 237 TVQDESASLSVESMNIQPDDQVLDMCAAPGGKTTQIAEHLNDNGHVEALDIHKNKLRLIQ 296
Query: 376 ETAKLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSGLGVLSK 422
++ + T D R + S DKVL+DAPCSGLG+L +
Sbjct: 297 RNVDRMHLSESVTTRALDARKSPEKYSRETFDKVLVDAPCSGLGLLRR 344
>gi|418069023|ref|ZP_12706303.1| tRNA and rRNA cytosine-C5-methylase [Pediococcus acidilactici
MA18/5M]
gi|357537756|gb|EHJ21779.1| tRNA and rRNA cytosine-C5-methylase [Pediococcus acidilactici
MA18/5M]
Length = 444
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 92/319 (28%), Positives = 158/319 (49%), Gaps = 17/319 (5%)
Query: 106 DLDDRDLRLVTDIVGGTIRWRRYLD-HLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
DL + D L+T++V G ++ R +D +L L E+T ++ +LR +++ L
Sbjct: 37 DLSEVDKHLLTELVYGVLQHRLTIDFYLANFLQRPEQT----PRWVINLLRTAIFQMEFL 92
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
D +P +A+ +E + +AK G +V G+LR + +P L + L
Sbjct: 93 DRVPTFAIFNETIEIAKRRGSDGVRKMVTGVLRSYQRQGTPSLDSIPDL-------TQRL 145
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
AT YS W+V + LG+ + K++ N S+R N + T A + Q +
Sbjct: 146 ATEYSVASWIVDQLLYELGENKCRKILDSINRPAHLSVRMNPIQRSTAA--IRQSLSEEY 203
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
+ SL + +R++ G + Q+ + G QDESA LV + GQ ++D CAA
Sbjct: 204 DVQESLLATDGLRLQNG-PGLAQSASFQAGEVIAQDESAMLVGETMQLATGQKVLDACAA 262
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403
PGGKT +A + G V A DI + R R++ + A+ + +++ +H D T
Sbjct: 263 PGGKTTQLAQKVGPDGQVIAWDIYESRTRLIQQNAQRMHLTNIVTEVH-DATTPCPELKE 321
Query: 404 KCDKVLLDAPCSGLGVLSK 422
+ D++L+DAPCSG+G+L +
Sbjct: 322 EFDRILVDAPCSGIGLLRR 340
>gi|421878284|ref|ZP_16309766.1| Putative rRNA methylase [Leuconostoc citreum LBAE C11]
gi|390447898|emb|CCF25886.1| Putative rRNA methylase [Leuconostoc citreum LBAE C11]
Length = 450
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 90/324 (27%), Positives = 160/324 (49%), Gaps = 28/324 (8%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L+D D RL+T +V G I+ R D+ + +K +EP + ++L +++ LD
Sbjct: 41 LNDSDKRLLTTLVYGVIQHRLTFDYWLTPFIKQKK----IEPWVRELLYTALFQLQYLDK 96
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL--LKDNNSLPLPKLEGNDRAQARAL 223
+P +A+ +E++ +AK G V IL + L D N++ P + L
Sbjct: 97 IPQHAIFNESIEVAKTLGHIGTAKFVTAILHNISRQGLPDINAIQNP---------IQRL 147
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSR----KGVTRADLVMQLN 279
+ S PVW++ + G+ + +++ N P+ ++R N+ + V +A L
Sbjct: 148 SVEASLPVWLIETLVEQNGEAKTRQIIGSINDAPAQAIRVNTALSTDEAVEQALLDEHFT 207
Query: 280 LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGL-VVAVVDPQPGQSIV 338
+K + + V TG +V + ++GL +QDESA L V A+ ++++
Sbjct: 208 FVKSK------VADHAYVVTG-GHVAGSKAYQDGLLTLQDESAMLPVEALQITTQVKTVL 260
Query: 339 DCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398
D AAPGGKT +A ++ + A+DI+ ++R++ AK V+ I D R A
Sbjct: 261 DAAAAPGGKTTQIAQYIADDATITALDIHAHKIRLIEANAKRLHVSDKITAQVLDARQTA 320
Query: 399 DNSTVKCDKVLLDAPCSGLGVLSK 422
+ T K D++L+DAPCSG G+L +
Sbjct: 321 NQLTTKFDRILVDAPCSGFGLLRR 344
>gi|184155726|ref|YP_001844066.1| rRNA methylase [Lactobacillus fermentum IFO 3956]
gi|183227070|dbj|BAG27586.1| rRNA methylase [Lactobacillus fermentum IFO 3956]
Length = 448
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 106/376 (28%), Positives = 177/376 (47%), Gaps = 47/376 (12%)
Query: 56 EVSPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLV 115
+++ RA++ L +++ GA+++L + SG L D RLV
Sbjct: 7 QLTGARAIALATLDKVRTSGAYSNLQLNQALESGQ----------------LSGADRRLV 50
Query: 116 TDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDE 174
T +V GT++ +R LD+ + +K + P + +L + ++ LD +P +A DE
Sbjct: 51 TALVYGTLQHQRTLDYWLSPFIAGKK----VRPWVKTLLLMALFQYQYLDRVPNFAATDE 106
Query: 175 NVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMV 234
+ +AK PG V G+L ++ N + K+E D Q LA S P W+V
Sbjct: 107 AIEIAKRRGNPGVRRFVTGVLHAIL---RNGVADVEKIE--DPKQ--RLAIQASLPDWLV 159
Query: 235 RRWTKYLG--QEEAIKLMVWNNSDPSFSLRANSRKGVTRA--DLVMQLNLLKVPHELSLH 290
G Q EA+ ++ N SLR N K L+ + P E++
Sbjct: 160 DELVAQYGLAQTEALAKVI--NEPARISLRVNRAKATVEEAQALLRSAGVETKPSEVA-- 215
Query: 291 LDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLY 350
+ V G V++ K G+ +QDESA L V + + ++D CAAPGGKT+
Sbjct: 216 -QNGLVVTKGA--VLKTAAFKNGVVTIQDESAMLAVESMHLTGHERVLDACAAPGGKTVQ 272
Query: 351 MASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR----TFADNSTVKCD 406
+A L+ G VYA+DI++ ++ ++ + A+ V+ + D R FAD D
Sbjct: 273 IAETLT-DGEVYALDIHRHKVGLIEKNAQRMGVDDRVFACQLDARQVGQEFADQF---FD 328
Query: 407 KVLLDAPCSGLGVLSK 422
++L+DAPCSG+G+L +
Sbjct: 329 QILVDAPCSGMGLLRR 344
>gi|335029198|ref|ZP_08522710.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
infantis SK1076]
gi|334269599|gb|EGL88016.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
infantis SK1076]
Length = 437
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 99/316 (31%), Positives = 157/316 (49%), Gaps = 27/316 (8%)
Query: 111 DLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPY 169
D LVT+IV GT+ + L+ + D S L +L + Y++ LD +P +
Sbjct: 42 DKGLVTEIVYGTVTRKLILEWYVSHFIEDRDKLDSW---LYVLLLMSVYQLQYLDKLPDH 98
Query: 170 AVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSH 229
AVV E V +AK + + G+ LVN +LR++ L++ LP + R R + YS
Sbjct: 99 AVVHEAVEIAK-SRKKGSEKLVNAVLRRI--LREG----LPDIANIKRKNKRD-SIAYSL 150
Query: 230 PVWMVRRWTKYLGQE--EAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHEL 287
PVW++ + + G+E +AI + + S + RK +A L +LL P L
Sbjct: 151 PVWLISKLKEEYGEERAQAIFESLLQRNKASIRVTDLGRKDEIKALLGASDSLL-APTGL 209
Query: 288 SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGK 347
F L EG +QDES+ LV +D + + ++D CAAPGGK
Sbjct: 210 VKEQGHFA----------SHDLFAEGAITIQDESSQLVAPTLDLRGDEQVLDACAAPGGK 259
Query: 348 TLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCD 406
T +MAS L+ G V A+D+ +L ++ E A+ V + ++T D R + + D
Sbjct: 260 TAHMASYLT-TGQVTALDLYDHKLTLIKENAERLGVANRVQTQKLDARKVHEFFGKDQFD 318
Query: 407 KVLLDAPCSGLGVLSK 422
K+L+DAPCSG+G+L +
Sbjct: 319 KILVDAPCSGIGLLRR 334
>gi|42560767|ref|NP_975218.1| Sun family protein [Mycoplasma mycoides subsp. mycoides SC str.
PG1]
gi|42492263|emb|CAE76860.1| Sun family protein [Mycoplasma mycoides subsp. mycoides SC str.
PG1]
Length = 432
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 88/320 (27%), Positives = 163/320 (50%), Gaps = 23/320 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
KDL+ + + ++V G I + +LD+L+ L +KT ++ +LL I Y+++ L
Sbjct: 40 KDLNQQTKDFIFNLVHGVISNKIHLDYLLTKLIDVKKTSIDLQIILL----ISLYQMIYL 95
Query: 165 D-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARAL 223
+ +P YA+V+E+V L K + A N +N IL K + KD LE N + L
Sbjct: 96 NSIPNYAIVNESVNLIKTTSQKQA-NFINAILNKFLRFKD------TYLEINLDNKDLEL 148
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
++S + K ++ +++V N+ P +R N+ K +T L + + +
Sbjct: 149 CILHSFSYELYLMLIKQYDKDIVNQIVVNNHQIPKLYIRLNTLK-ITSDQLFNKYKDIYL 207
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
+ +++ D I KT +I + L K G +QD+++ LV +++P ++D C+A
Sbjct: 208 LKKTNVN-DCLIANKT----IINSNLYKNGFITIQDKASILVSQILNPSLNTKVLDMCSA 262
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV-IRTIHADLRTFADNST 402
PGGK +++ L G + +IN+ +++++ E ++++N + I + D R
Sbjct: 263 PGGKLTHLSMILKNTGNIIGNEINESKIKLIKEN--INRLNCLNISLTNMDARKIKQKE- 319
Query: 403 VKCDKVLLDAPCSGLGVLSK 422
+ D VLLDAPCSG GV +
Sbjct: 320 -EFDYVLLDAPCSGFGVFKR 338
>gi|398792545|ref|ZP_10553139.1| ribosomal RNA small subunit methyltransferase RsmB [Pantoea sp.
YR343]
gi|398212923|gb|EJM99524.1| ribosomal RNA small subunit methyltransferase RsmB [Pantoea sp.
YR343]
Length = 428
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 165/321 (51%), Gaps = 25/321 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K L D+D L+ ++ G +R L+ LI L E+T + + +L +L +G Y+++
Sbjct: 34 KTLSDKDSALLQELCFGVMRTLPQLEALIGKLM--ERTLTGKQRVLHYLLMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A + E V A+V R L+NG+LR+ L+ +L +G+ R
Sbjct: 92 RVPAHAALAETVAGAEVLKRTALKGLLNGVLRQF--LRQQEALLAEVDQGSQR------- 142
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
Y HP W+++R + E+ +++ NN P LR N + A L LL+
Sbjct: 143 --YWHPGWLLKR-LQAAWPEQWQQIVEANNQRPPMWLRVNRQHHSRDA----WLALLQAE 195
Query: 285 HELSLHLD--EFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
+++ D + +R+++ V Q +G VQD SA +++P+ G+SI+D CA
Sbjct: 196 EKVAFPGDAQDALRLESP-APVSQLPGFDQGWVTVQDLSAQRCALLLEPKDGESILDLCA 254
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-S 401
APGGKT ++ ++ Q V A+D++ RL ++E + + + +R D RT AD
Sbjct: 255 APGGKTTHILE-IAPQAKVLAVDVDPQRLLRVHENLQRLGMQAEVR--QGDGRTPADWCG 311
Query: 402 TVKCDKVLLDAPCSGLGVLSK 422
++ D++LLDAPCS GV+ +
Sbjct: 312 DMQFDRILLDAPCSATGVIRR 332
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,862,653,297
Number of Sequences: 23463169
Number of extensions: 284746200
Number of successful extensions: 673649
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5541
Number of HSP's successfully gapped in prelim test: 2772
Number of HSP's that attempted gapping in prelim test: 654267
Number of HSP's gapped (non-prelim): 9050
length of query: 456
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 310
effective length of database: 8,933,572,693
effective search space: 2769407534830
effective search space used: 2769407534830
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 79 (35.0 bits)