BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012783
(456 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YXL|A Chain A, Crystal Structure Of Ph0851
Length = 450
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 104/210 (49%), Gaps = 4/210 (1%)
Query: 215 NDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL 274
N + + L Y P W++ R LG E N S+R N+ K ++
Sbjct: 143 NPKNELEELEWKYLAPSWLIERVKGILGDETEDFFRSVNKRHEWISIRVNTLKANVE-EV 201
Query: 275 VMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 334
+ +L V S + +++K G N + EG VQ+E++ + V+DP+PG
Sbjct: 202 IGELEEDGVEVVRSERVPTILKIK-GPYNFDTSSAFNEGKIIVQEEASAVASIVLDPKPG 260
Query: 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 394
+++VD AAPGGKT ++A + +G +YA D++K R++ L + K + +++ + D
Sbjct: 261 ETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK-IVKPLVKDA 319
Query: 395 RTFADNSTVK-CDKVLLDAPCSGLGVLSKT 423
R + + DKVLLDAPC+ G + K
Sbjct: 320 RKAPEIIGEEVADKVLLDAPCTSSGTIGKN 349
>pdb|1SQF|A Chain A, The Crystal Structure Of E. Coli Fmu Binary Complex With
S- Adenosylmethionine At 2.1 A Resolution
pdb|1SQG|A Chain A, The Crystal Structure Of The E. Coli Fmu Apoenzyme At 1.65
A Resolution
Length = 429
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 130/280 (46%), Gaps = 36/280 (12%)
Query: 153 ILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKL 212
++ +G Y+++ +PP+A + E V A RP L+NG+LR+
Sbjct: 80 LIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQLKGLINGVLRQF-------------- 125
Query: 213 EGNDRAQARALATI------YSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANS 265
R Q LA Y HP W+++R K Y Q ++I + NN P LR N
Sbjct: 126 ---QRQQEELLAEFNASDARYLHPSWLLKRLQKAYPEQWQSI--VEANNQRPPMWLRINR 180
Query: 266 RKGVTRADLVM--QLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAG 323
+ L + + + PH + +R++T G ++G VQD SA
Sbjct: 181 THHSRDSWLALLDEAGMKGFPHA---DYPDAVRLETPAPVHALPGF-EDGWVTVQDASAQ 236
Query: 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV 383
+ + PQ G+ I+D CAAPGGKT ++ ++ + V A+DI++ RL + + K +
Sbjct: 237 GCMTWLAPQNGEHILDLCAAPGGKTTHILE-VAPEAQVVAVDIDEQRLSRVYDNLKRLGM 295
Query: 384 NSVIRTIHADLRTFAD-NSTVKCDKVLLDAPCSGLGVLSK 422
+ ++ D R + + D++LLDAPCS GV+ +
Sbjct: 296 KATVK--QGDGRYPSQWCGEQQFDRILLDAPCSATGVIRR 333
>pdb|3M6U|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6U|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6V|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
pdb|3M6V|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
Length = 464
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 94/196 (47%), Gaps = 13/196 (6%)
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA-DLVMQLNLLKVP--HE 286
P + R + LG+E L ++ LR N+ K A + L +P E
Sbjct: 3 PKAFLSRMAELLGEEFPAFLKALTEGKRTYGLRVNTLKLPPEAFQRISPWPLRPIPWCQE 62
Query: 287 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 346
+ +E + G AGL +Q+ SA V ++DP+PG+ ++D AAPGG
Sbjct: 63 GFYYPEE---ARPGPHPFFYAGLYY-----IQEPSAQAVGVLLDPKPGERVLDLAAAPGG 114
Query: 347 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 406
KT ++A+ + G+GL+ A +++ R+R L E + + + + A R A+
Sbjct: 115 KTTHLAARMGGKGLLLANEVDGKRVRGLLEN--VERWGAPLAVTQAPPRALAEAFGTYFH 172
Query: 407 KVLLDAPCSGLGVLSK 422
+VLLDAPCSG G+ K
Sbjct: 173 RVLLDAPCSGEGMFRK 188
>pdb|3M6W|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212 In Complex
With S-Adenosyl-L- Methionine
Length = 464
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 94/196 (47%), Gaps = 13/196 (6%)
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA-DLVMQLNLLKVP--HE 286
P + R + LG+E L ++ LR N+ K A + L +P E
Sbjct: 3 PKAFLSRMAELLGEEFPAFLKALTEGKRTYGLRVNTLKLPPEAFQRISPWPLRPIPWCQE 62
Query: 287 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 346
+ +E + G AGL +Q+ SA V ++DP+PG+ ++D AAPGG
Sbjct: 63 GFYYPEE---ARPGPHPFFYAGLYY-----IQEPSAQAVGVLLDPKPGERVLDLAAAPGG 114
Query: 347 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 406
KT ++A+ + G+GL+ A +++ R+R L E + + + + A R A+
Sbjct: 115 KTTHLAARMGGKGLLLANEVDGKRVRGLLEN--VERWGAPLAVTQAPPRALAEAFGTYFH 172
Query: 407 KVLLDAPCSGLGVLSK 422
+VLLDAPCSG G+ K
Sbjct: 173 RVLLDAPCSGEGMFRK 188
>pdb|3M6X|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212
Length = 464
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 92/196 (46%), Gaps = 13/196 (6%)
Query: 230 PVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA-DLVMQLNLLKVP--HE 286
P + R + LG+E L ++ LR N+ K A + L +P E
Sbjct: 3 PKAFLSRXAELLGEEFPAFLKALTEGKRTYGLRVNTLKLPPEAFQRISPWPLRPIPWCQE 62
Query: 287 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 346
+ +E + G AGL +Q+ SA V ++DP+PG+ ++D AAPGG
Sbjct: 63 GFYYPEE---ARPGPHPFFYAGLYY-----IQEPSAQAVGVLLDPKPGERVLDLAAAPGG 114
Query: 347 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 406
KT ++A+ G+GL+ A +++ R+R L E + + + + A R A+
Sbjct: 115 KTTHLAARXGGKGLLLANEVDGKRVRGLLEN--VERWGAPLAVTQAPPRALAEAFGTYFH 172
Query: 407 KVLLDAPCSGLGVLSK 422
+VLLDAPCSG G K
Sbjct: 173 RVLLDAPCSGEGXFRK 188
>pdb|1IXK|A Chain A, Crystal Structure Analysis Of Methyltransferase Homolog
Protein From Pyrococcus Horikoshii
Length = 315
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 61/111 (54%), Gaps = 2/111 (1%)
Query: 313 GLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLR 372
GL +Q+ S+ +DP+PG+ + D AAPGGKT Y+A G++YA D+++ RLR
Sbjct: 98 GLIYIQEASSXYPPVALDPKPGEIVADXAAAPGGKTSYLAQLXRNDGVIYAFDVDENRLR 157
Query: 373 ILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKT 423
V +VI + L N V+ DK+LLDAPC+G G + K
Sbjct: 158 ETRLNLSRLGVLNVILFHSSSLHIGELN--VEFDKILLDAPCTGSGTIHKN 206
>pdb|3M4X|A Chain A, Structure Of A Ribosomal Methyltransferase
Length = 456
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 70/132 (53%), Gaps = 2/132 (1%)
Query: 309 LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINK 368
L + G Q+ SA +V +PG+ ++D CAAPGGK+ +A+ G+GL+ +I
Sbjct: 81 LHQAGYEYSQEPSAXIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQXKGKGLLVTNEIFP 140
Query: 369 GRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKTCVGIG 428
R +IL+E + V++ I T HA S D++++DAPCSG G K I
Sbjct: 141 KRAKILSENIERWGVSNAIVTNHAPAELVPHFSGF-FDRIVVDAPCSGEGXFRKDPNAIK 199
Query: 429 DWRIWKSLRYCK 440
+W +S YC+
Sbjct: 200 EWTE-ESPLYCQ 210
>pdb|3A4T|A Chain A, Crystal Structure Of Atrm4 From M.Jannaschii With
Sinefungin
pdb|3A4T|B Chain B, Crystal Structure Of Atrm4 From M.Jannaschii With
Sinefungin
pdb|3AJD|A Chain A, Crystal Structure Of Atrm4
Length = 274
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 65/108 (60%), Gaps = 6/108 (5%)
Query: 313 GLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLR 372
G Q S+ + V++P+ I+D CAAPGGKT ++A + +G + A++I+K R +
Sbjct: 63 GYYMPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTK 122
Query: 373 ILNETA-KLHQVNSVIRTIHADLRTFAD---NSTVKCDKVLLDAPCSG 416
L ++ +N++I I+AD+R + D + + DK+LLDAPCSG
Sbjct: 123 ALKSNINRMGVLNTII--INADMRKYKDYLLKNEIFFDKILLDAPCSG 168
>pdb|2FRX|A Chain A, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|B Chain B, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|C Chain C, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|D Chain D, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
Length = 479
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 3/120 (2%)
Query: 313 GLCAVQDESAGLVVAVV--DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGR 370
GL +Q+ S+ L VA + D Q + D AAPG KT +++ + +G + A + + R
Sbjct: 95 GLFYIQEASSXLPVAALFADGNAPQRVXDVAAAPGSKTTQISARXNNEGAILANEFSASR 154
Query: 371 LRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKTCVGIGDW 430
+++L+ +++V T H D R F D +LLDAPCSG GV+ K + +W
Sbjct: 155 VKVLHANISRCGISNVALT-HFDGRVFGAAVPEXFDAILLDAPCSGEGVVRKDPDALKNW 213
>pdb|2B9E|A Chain A, Human Nsun5 Protein
Length = 309
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 6/162 (3%)
Query: 266 RKGVT---RADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESA 322
R+G + RA + L LK H L L + V ++ + L + G +QD ++
Sbjct: 32 RQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRAS 91
Query: 323 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ 382
L ++DP PG ++D CAAPG KT ++A+ L QG ++A D++ RL +
Sbjct: 92 CLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG 151
Query: 383 VNSVIRTIHADLRTF--ADNSTVKCDKVLLDAPCSGLGVLSK 422
V S D +D + +LLD CSG G+ S+
Sbjct: 152 V-SCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSR 192
>pdb|4FP9|A Chain A, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|C Chain C, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|D Chain D, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|F Chain F, Human Mterf4-Nsun4 Protein Complex
Length = 360
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 319 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA 378
D ++ L V + QPG ++D CAAPGGKTL + + L A D++ R+ L +
Sbjct: 135 DAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLA-ANDLSPSRIARLQKIL 193
Query: 379 KLHQVNSV-----IRTIHADLRTFADNSTVKCDKVLLDAPCS 415
+ + +R D R + + D+VL+D PC+
Sbjct: 194 HSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDRVLVDVPCT 235
>pdb|4FZV|A Chain A, Crystal Structure Of The Human Mterf4:nsun4:sam Ternary
Complex
Length = 359
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 319 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA 378
D ++ L V + QPG ++D CAAPGGKTL + + L A D++ R+ L +
Sbjct: 134 DAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLA-ANDLSPSRIARLQKIL 192
Query: 379 KLHQVNSV-----IRTIHADLRTFADNSTVKCDKVLLDAPCS 415
+ + +R D R + + D+VL+D PC+
Sbjct: 193 HSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDRVLVDVPCT 234
>pdb|3LHD|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
Length = 253
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 9/152 (5%)
Query: 269 VTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVI-------QAGLLKEGLCAVQDES 321
V++ D L +LK+ + + E I+ G + I +K G V +
Sbjct: 22 VSKRDFHTDLGILKLEEIIGRNFGEAIKSHKGHEFKILRPRIVDYLDKMKRGPQIVHPKD 81
Query: 322 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH 381
A L+VA PG IV+ G TL++A+ + +G V + +I + ++ E K
Sbjct: 82 AALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWA 141
Query: 382 QVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 413
+ + D+ + V D V+LD P
Sbjct: 142 GFDDRVTIKLKDIYEGIEEENV--DHVILDLP 171
>pdb|3MB5|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Methionine
Length = 255
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 9/152 (5%)
Query: 269 VTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVI-------QAGLLKEGLCAVQDES 321
V++ D L +LK+ + + E I+ G + I +K G V +
Sbjct: 22 VSKRDFHTDLGILKLEEIIGRNFGEAIKSHKGHEFKILRPRIVDYLDKMKRGPQIVHPKD 81
Query: 322 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH 381
A L+VA PG IV+ G TL++A+ + +G V + +I + ++ E K
Sbjct: 82 AALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWA 141
Query: 382 QVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 413
+ + D+ + V D V+LD P
Sbjct: 142 GFDDRVTIKLKDIYEGIEEENV--DHVILDLP 171
>pdb|3TMA|A Chain A, Crystal Structure Of Trmn From Thermus Thermophilus
Length = 354
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 328 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVI 387
+ D +PG ++D G L AS L VYA D+++ RL + E A L S I
Sbjct: 198 LADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAA-LASGLSWI 256
Query: 388 RTIHADLRTFADNSTVKCDKVLLDAP 413
R + AD R + D++L + P
Sbjct: 257 RFLRADARHL-PRFFPEVDRILANPP 281
>pdb|2B25|A Chain A, Human Putative Trna(1-Methyladenosine)methyltransferase
pdb|2B25|B Chain B, Human Putative Trna(1-Methyladenosine)methyltransferase
Length = 336
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 52/114 (45%), Gaps = 11/114 (9%)
Query: 309 LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAI---- 364
L+K G + ++++++D PG ++++ + GG +L+++ + QG V +
Sbjct: 81 LMKRGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRK 140
Query: 365 ---DINKGRLRILNETAKLHQVNSV---IRTIHADLR-TFADNSTVKCDKVLLD 411
D+ K + ++ KL V + IH D+ D ++ D V LD
Sbjct: 141 DHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALD 194
>pdb|1EIZ|A Chain A, Ftsj Rna Methyltransferase Complexed With S-
Adenosylmethionine
pdb|1EJ0|A Chain A, Ftsj Rna Methyltransferase Complexed With S-
Adenosylmethionine, Mercury Derivative
Length = 180
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDI 366
+PG ++VD AAPGG + Y+ + + G+G + A D+
Sbjct: 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDL 55
>pdb|1EYV|A Chain A, The Crystal Structure Of Nusb From Mycobacterium
Tuberculosis
pdb|1EYV|B Chain B, The Crystal Structure Of Nusb From Mycobacterium
Tuberculosis
Length = 156
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 153 ILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLL 201
ILR+ +E++ D+P VVDE V+LAK + VNG+L +++L+
Sbjct: 92 ILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSPGFVNGVLGQVMLV 141
>pdb|1TZT|A Chain A, T. Maritima Nusb, P21
pdb|1TZT|B Chain B, T. Maritima Nusb, P21
pdb|1TZU|A Chain A, T. Maritima Nusb, P212121
pdb|1TZV|A Chain A, T. Maritima Nusb, P3121, Form 1
pdb|1TZW|A Chain A, T. Maritima Nusb, P3121, Form 2
pdb|1TZX|A Chain A, T. Maritima Nusb, P3221
pdb|1TZX|B Chain B, T. Maritima Nusb, P3221
Length = 142
Score = 32.3 bits (72), Expect = 0.54, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 153 ILRIGFYEIV-KLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKL 198
+LR+ YE++ + D+P +DE + +AK +G VNGIL ++
Sbjct: 84 VLRLATYELLFEKDIPIEVTIDEAIEIAKRYGTENSGKFVNGILDRI 130
>pdb|1F8F|A Chain A, Crystal Structure Of Benzyl Alcohol Dehydrogenase From
Acinetobacter Calcoaceticus
Length = 371
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 11/131 (8%)
Query: 315 CAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRIL 374
C +Q AG + + P S V A G + +A+ + G ++ A+DI + RL +
Sbjct: 173 CGIQ-TGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELA 231
Query: 375 NETAKLHQVNS-------VIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKTCVGI 427
+ H +NS I+ I FA ST + +L LG+L K V +
Sbjct: 232 KQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSPE--ILKQGVDALGILGKIAV-V 288
Query: 428 GDWRIWKSLRY 438
G ++ + ++
Sbjct: 289 GAPQLGTTAQF 299
>pdb|2VGL|A Chain A, Ap2 Clathrin Adaptor Core
pdb|2XA7|A Chain A, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 621
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 245 EAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIR--VKTGLQ 302
EAI L++ ++S+P+ +RA ++ G L L + +L EF VKT ++
Sbjct: 312 EAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIE 371
Query: 303 NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 338
VI A L E +V+ + L+ A+ D Q IV
Sbjct: 372 TVINA-LKTERDVSVRQRAVDLLYAMCDRSNAQQIV 406
>pdb|2JKR|A Chain A, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|L Chain L, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|A Chain A, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|L Chain L, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
Length = 623
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 245 EAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIR--VKTGLQ 302
EAI L++ ++S+P+ +RA ++ G L L + +L EF VKT ++
Sbjct: 312 EAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIE 371
Query: 303 NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIV 338
VI A L E +V+ + L+ A+ D Q IV
Sbjct: 372 TVINA-LKTERDVSVRQRAVDLLYAMCDRSNAQQIV 406
>pdb|3IMQ|A Chain A, Crystal Structure Of The Nusb101-S10(Delta Loop) Complex
pdb|3IMQ|B Chain B, Crystal Structure Of The Nusb101-S10(Delta Loop) Complex
pdb|3IMQ|C Chain C, Crystal Structure Of The Nusb101-S10(Delta Loop) Complex
Length = 141
Score = 32.0 bits (71), Expect = 0.77, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 153 ILRIGFYEIVKLDMPPYAV-VDENVRLAKVALRPGAGNLVNGILRK 197
+LRI YE+ K PY V ++E + LAK + VNG+L K
Sbjct: 86 VLRIALYELSKRSDVPYKVAINEAIELAKSFGAENSHKFVNGVLDK 131
>pdb|2PWY|A Chain A, Crystal Structure Of A M1a58 Trna Methyltransferase
pdb|2PWY|B Chain B, Crystal Structure Of A M1a58 Trna Methyltransferase
Length = 258
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 9/98 (9%)
Query: 283 VPHELSLHLDE--FIRVKTGLQNVIQAGLLKEGLCAVQ-------DESAGLVVAVVDPQP 333
VPHE L +R G + + L+E L ++ + A +V ++D P
Sbjct: 37 VPHEALLEAGPGGVVRTHLGEELSVHRPTLEEYLLHMKRSATPTYPKDASAMVTLLDLAP 96
Query: 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRL 371
G +++ GG TL++A + +GLV + + L
Sbjct: 97 GMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHL 134
>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
pdb|1ZMW|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
Length = 327
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 347 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 406
KTLY+ + G V+ + GR++ AK Q+ S ++ H + F + +K +
Sbjct: 86 KTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQYCH---QKFIVHRDLKAE 142
Query: 407 KVLLDA 412
+LLDA
Sbjct: 143 NLLLDA 148
>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
pdb|1ZMU|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
Length = 327
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 347 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 406
KTLY+ + G V+ + GR++ AK Q+ S ++ H + F + +K +
Sbjct: 86 KTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQYCH---QKFIVHRDLKAE 142
Query: 407 KVLLDA 412
+LLDA
Sbjct: 143 NLLLDA 148
>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
pdb|1ZMV|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
Length = 327
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 347 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 406
KTLY+ + G V+ + GR++ AK Q+ S ++ H + F + +K +
Sbjct: 86 KTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQYCH---QKFIVHRDLKAE 142
Query: 407 KVLLDA 412
+LLDA
Sbjct: 143 NLLLDA 148
>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|B Chain B, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|C Chain C, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|D Chain D, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|E Chain E, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|F Chain F, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
Length = 327
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 347 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 406
KTLY+ + G V+ + GR++ AK Q+ S ++ H + F + +K +
Sbjct: 86 KTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQYCH---QKFIVHRDLKAE 142
Query: 407 KVLLDA 412
+LLDA
Sbjct: 143 NLLLDA 148
>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
pdb|2R0I|B Chain B, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
Length = 327
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 347 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 406
KTLY+ + G V+ + GR++ AK Q+ S ++ H + F + +K +
Sbjct: 86 KTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQYCH---QKFIVHRDLKAE 142
Query: 407 KVLLDA 412
+LLDA
Sbjct: 143 NLLLDA 148
>pdb|3D3B|A Chain A, Structural And Functional Analysis Of The E. Coli Nusb-s10
Transcription Antitermination Complex.
pdb|3D3C|A Chain A, Structural And Functional Analysis Of The E. Coli Nusb-S10
Transcription Antitermination Complex.
pdb|3D3C|B Chain B, Structural And Functional Analysis Of The E. Coli Nusb-S10
Transcription Antitermination Complex.
pdb|3D3C|C Chain C, Structural And Functional Analysis Of The E. Coli Nusb-S10
Transcription Antitermination Complex
Length = 141
Score = 31.6 bits (70), Expect = 0.98, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 153 ILRIGFYEIVKLDMPPYAV-VDENVRLAKVALRPGAGNLVNGILRK 197
+LRI YE+ K PY V ++E + LAK + VNG+L K
Sbjct: 86 VLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 131
>pdb|1EY1|A Chain A, Solution Structure Of Escherichia Coli Nusb
Length = 139
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 153 ILRIGFYEIVKLDMPPYAV-VDENVRLAKVALRPGAGNLVNGILRK 197
+LRI YE+ K PY V ++E + LAK + VNG+L K
Sbjct: 84 VLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK 129
>pdb|1MHP|H Chain H, Crystal Structure Of A Chimeric Alpha1 Integrin I-Domain
In Complex With The Fab Fragment Of A Humanized
Neutralizing Antibody
pdb|1MHP|X Chain X, Crystal Structure Of A Chimeric Alpha1 Integrin I-Domain
In Complex With The Fab Fragment Of A Humanized
Neutralizing Antibody
Length = 219
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 42/102 (41%), Gaps = 26/102 (25%)
Query: 320 ESAGLVVAVVDPQPGQSIVDCCAAPG---------------GKTLYMASCLSGQGLVYAI 364
ES G +V QPG S+ CAA G GK L + +SG G Y +
Sbjct: 6 ESGGGLV-----QPGGSLRLSCAASGFTFSRYTMSWVRQAPGKGLEWVATISGGGHTYYL 60
Query: 365 DINKGRLRILNETAK---LHQVNSV---IRTIHADLRTFADN 400
D KGR I + +K Q+NS+ ++ R F D
Sbjct: 61 DSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCTRGFGDG 102
>pdb|3A27|A Chain A, Crystal Structure Of M. Jannaschii Tyw2 In Complex With
Adomet
Length = 272
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 394
+ +VD A G T+ +A S LVYAI+ N L E KL+++N+VI +
Sbjct: 121 EVVVDMFAGIGYFTIPLAK-YSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPIL---- 175
Query: 395 RTFADNSTVK----CDKVLLDAPCSGLGVLSKTCVGIGD 429
ADN V+ D+V++ L KT + D
Sbjct: 176 ---ADNRDVELKDVADRVIMGYVHKTHKFLDKTFEFLKD 211
>pdb|3EOT|H Chain H, Crystal Structure Of Lac031, An Engineered Anti-Vla1 Fab
Length = 226
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 42/102 (41%), Gaps = 26/102 (25%)
Query: 320 ESAGLVVAVVDPQPGQSIVDCCAAPG---------------GKTLYMASCLSGQGLVYAI 364
ES G +V QPG S+ CAA G GK L + +SG G Y +
Sbjct: 6 ESGGGLV-----QPGGSLRLSCAASGFTFSRYTMSWVRQAPGKGLEWVATISGGGHTYYL 60
Query: 365 DINKGRLRILNETAK---LHQVNSV---IRTIHADLRTFADN 400
D KGR I + +K Q+NS+ ++ R F D
Sbjct: 61 DSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCTRGFGDG 102
>pdb|2ZZN|A Chain A, The Complex Structure Of Atrm5 And Trnacys
pdb|2ZZN|B Chain B, The Complex Structure Of Atrm5 And Trnacys
pdb|3AY0|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii Trm5 In
Complex With Adenosine
pdb|3AY0|B Chain B, Crystal Structure Of Methanocaldococcus Jannaschii Trm5 In
Complex With Adenosine
Length = 336
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 337 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396
+VD A G + +C + + +YAIDIN + +L + KL+++ I I +D+R
Sbjct: 199 VVDMFAGVGP---FSIACKNAKK-IYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVRE 254
Query: 397 FADNSTVKCDKVLLDAP 413
VK ++V+++ P
Sbjct: 255 V----DVKGNRVIMNLP 267
>pdb|1T2J|A Chain A, Crystal Structure Of A Human Vh Domain
Length = 116
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 22/79 (27%)
Query: 317 VQDESAGLVVAVVDPQPGQSIVDCCAAPG---------------GKTLYMASCLSGQG-L 360
+Q+ GLV QPG S+ CAA G GK L S +SG G
Sbjct: 4 LQESGGGLV------QPGGSLRLSCAASGFTFSNSAMSWVRQAPGKGLEWVSSISGSGGN 57
Query: 361 VYAIDINKGRLRILNETAK 379
Y+ D KGR I + AK
Sbjct: 58 TYSADSVKGRFTISRDNAK 76
>pdb|2ZZM|A Chain A, The Complex Structure Of Atrm5 And Trnaleu
Length = 336
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 337 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396
+VD A G + +C + + +YAIDIN + +L + KL+++ I I +D+R
Sbjct: 199 VVDMFAGVGP---FSIACKNAKK-IYAIDINPHAIELLXKNIKLNKLEHKIIPILSDVRE 254
Query: 397 FADNSTVKCDKVLLDAP 413
VK ++V+++ P
Sbjct: 255 V----DVKGNRVIMNLP 267
>pdb|3ENH|C Chain C, Crystal Structure Of Cgi121BUD32KAE1 COMPLEX
pdb|3ENH|D Chain D, Crystal Structure Of Cgi121BUD32KAE1 COMPLEX
pdb|2K8Y|A Chain A, Solution Nmr Structure Of Cgi121 From Methanococcus
Jannaschii. Northeast Structural Genomics Consortium
Target Mj0187
Length = 150
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 15/76 (19%)
Query: 130 DHLICLLCHDEKTFSSMEPLLLQILRIGFYEIV--KLDMPPYAVVDENVRLAKVALR-PG 186
D +CL+C DE+TF + YE++ ++D + ++ RL + + G
Sbjct: 83 DGNVCLICEDEETFRKI------------YELIGGEIDDSVLEINEDKERLIREIFKIRG 130
Query: 187 AGNLVNGILRKLVLLK 202
GN+V +L K+ L++
Sbjct: 131 FGNVVERVLEKIALIE 146
>pdb|1YB2|A Chain A, Structure Of A Putative Methyltransferase From
Thermoplasma Acidophilum
Length = 275
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRL-RILNETAKLHQVNSVIRTI 390
+PG I++ G + Y+ L+G+G + ++ ++ L + + ++ + + +V RT
Sbjct: 109 RPGXDILEVGVGSGNXSSYILYALNGKGTLTVVERDEDNLKKAXDNLSEFYDIGNV-RTS 167
Query: 391 HADLRTFADNSTVKCDKVLLDAP 413
+D+ F S D V+ D P
Sbjct: 168 RSDIADFI--SDQXYDAVIADIP 188
>pdb|2B2X|H Chain H, Vla1 Rdeltah I-Domain Complexed With A Quadruple Mutant Of
The Aqc2 Fab
pdb|2B2X|I Chain I, Vla1 Rdeltah I-Domain Complexed With A Quadruple Mutant Of
The Aqc2 Fab
Length = 226
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 26/102 (25%)
Query: 320 ESAGLVVAVVDPQPGQSIVDCCAAPG---------------GKTLYMASCLSGQGLVYAI 364
ES G +V QPG S+ CAA G GK L + +SG G Y +
Sbjct: 6 ESGGGLV-----QPGGSLRLSCAASGFTFSRYTMSWVRQAPGKGLEWVAVISGGGHTYYL 60
Query: 365 DINKGRLRILNETAK---LHQVNSV---IRTIHADLRTFADN 400
D +GR I + +K Q+NS+ ++ R F D
Sbjct: 61 DSVEGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCTRGFGDG 102
>pdb|2YX1|A Chain A, Crystal Structure Of M.Jannaschii Trna M1g37
Methyltransferase
pdb|2YX1|B Chain B, Crystal Structure Of M.Jannaschii Trna M1g37
Methyltransferase
Length = 336
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 337 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396
+VD A G + +C + + +YAIDIN + +L + KL+++ I I +D+R
Sbjct: 199 VVDXFAGVGP---FSIACKNAKK-IYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVRE 254
Query: 397 FADNSTVKCDKVLLDAP 413
VK ++V+ + P
Sbjct: 255 V----DVKGNRVIXNLP 267
>pdb|1ZMY|A Chain A, Cabbcii-10 Vhh Framework With Cdr Loops Of Cablys3 Grafted
On It And In Complex With Hen Egg White Lysozyme
Length = 142
Score = 28.9 bits (63), Expect = 6.1, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK 379
APGG+ +A+ G G+ Y D KGR I + AK
Sbjct: 40 APGGEREAVAAINMGGGITYYADSVKGRFTISRDNAK 76
>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
pdb|2YXE|B Chain B, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
Length = 215
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 10/102 (9%)
Query: 266 RKGVTRADLVMQLNLLKVPHE--LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAG 323
R+G ++ V+ LLKVP E L HL E+ V T L+ I G + + A+ G
Sbjct: 16 REGYIKSKRVID-ALLKVPREEFLPEHLKEYAYVDTPLE--IGYG---QTISAIH--MVG 67
Query: 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAID 365
++ ++D +PG +++ G A + GLV +I+
Sbjct: 68 MMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIE 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,425,876
Number of Sequences: 62578
Number of extensions: 491878
Number of successful extensions: 1337
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1296
Number of HSP's gapped (non-prelim): 45
length of query: 456
length of database: 14,973,337
effective HSP length: 102
effective length of query: 354
effective length of database: 8,590,381
effective search space: 3040994874
effective search space used: 3040994874
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)